HHsearch alignment for GI: 254780434 and conserved domain: cd00408
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.30 E-value=0.071 Score=32.43 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=91.4
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCEEECCCCC
Q ss_conf 779888740367524102001368789988626884255541000024777778899987641-0001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vsI~~~~~s 146 (362)
T Consensus 21 ~~~i~~l~~~Gv~gi~v~G~tGE~---------~~L------------s~~Er~~l~~~~~~~~~~~~pvi~gv~~~s-- 77 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA---------PTL------------TDEERKEVIEAVVEAVAGRVPVIAGVGANS-- 77 (281)
T ss_pred HHHHHHHHHCCCCEEEECEECCCH---------HHC------------CHHHHHHHHHHHHHHCCCCCEEEEECCCCC--
T ss_conf 999999997699989968545243---------138------------999999999999998089850999578788--
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----C
Q ss_conf 46788776555420675526983033365322110000234321111224445565531268851786505777-----7
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-----S 221 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-----~ 221 (362)
T Consensus 78 ~~~~~~~a~~a~~~--Gad~i~v--~pP~y~~----~~~~~i~~~~~~i~~---------~~~~pi~iYn~P~~~g~~l~ 140 (281)
T cd00408 78 TREAIELARHAEEA--GADGVLV--VPPYYNK----PSQEGIVAHFKAVAD---------ASDLPVILYNIPGRTGVDLS 140 (281)
T ss_pred HHHHHHHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCCCCC
T ss_conf 99999999999975--9998998--7997778----999999999999985---------55997799727753167768
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
T Consensus 141 ~~~l~~L~----~--~~nv~giK~---------s~---------~------d~~~~~~~~~~~~~~~~v~~-G---~d~~ 186 (281)
T cd00408 141 PETIARLA----E--HPNIVGIKD---------SS---------G------DLDRLTRLIALLGPDFAVLS-G---DDDL 186 (281)
T ss_pred HHHHHHHH----C--CCCEEEEEC---------CC---------C------CHHHHHHHHHHCCCCCEEEC-C---CHHH
T ss_conf 99999984----8--999899984---------88---------9------99999999997599705626-9---6688
Q ss_pred HHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9999983999754527877069789999999
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
T Consensus 187 ~~~~l~~G~~G~i~~~~n~~--P~~~~~l~~ 215 (281)
T cd00408 187 LLPALALGADGAISGAANVA--PKLAVALYE 215 (281)
T ss_pred HHHHHHCCCCCEEECHHHCC--HHHHHHHHH
T ss_conf 99998728981440242316--999999999