HHsearch alignment for GI: 254780434 and conserved domain: cd00429

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.36  E-value=0.097  Score=31.52  Aligned_cols=199  Identities=20%  Similarity=0.252  Sum_probs=114.4

Q ss_pred             EECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             85346888677988874036752410200136878998862688425554100002477777889998764100012100
Q gi|254780434|r   59 GMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGI  138 (362)
Q Consensus        59 glAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~v  138 (362)
T Consensus         6 il~ad~~~l~~~i~~~~~~g~d~lHi------------------DimDG~Fvpn~t~g---~-~~v~~i~~~t-~~~~Dv   62 (211)
T cd00429           6 ILSADFANLGEELKRLEEAGADWIHI------------------DVMDGHFVPNLTFG---P-PVVKALRKHT-DLPLDV   62 (211)
T ss_pred             HHHCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCCC---H-HHHHHHHHHC-CCCEEE
T ss_conf             53179999999999999769998999------------------57579727866759---8-9999998757-997058


Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             01104542467887765554206755269830333653221100002343211112244455655312688517865057
Q gi|254780434|r  139 NLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP  218 (362)
Q Consensus       139 sI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP  218 (362)
T Consensus        63 HLMv~~P-----~~~i~~~~~~--g~d~I~~H~E~~-----------~~~~~~i~~ik~~--------g--~~~Glal~p  114 (211)
T cd00429          63 HLMVENP-----ERYIEAFAKA--GADIITFHAEAT-----------DHLHRTIQLIKEL--------G--MKAGVALNP  114 (211)
T ss_pred             EEEECCH-----HHHHHHHHHH--CCCEEEECCCCC-----------CCHHHHHHHHHHC--------C--CCCEEEECC
T ss_conf             9987188-----7769999970--998899864322-----------0899999999973--------9--872357548


Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCEEEEEECC
Q ss_conf             7774888999998764498299980665553234577544632211356454246899999997408---9748999678
Q gi|254780434|r  219 DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG---PKIAIIGTGG  295 (362)
Q Consensus       219 d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~---~~i~IIg~GG  295 (362)
T Consensus       115 ~T~~~~l~~~l~~-----~D~vliM-t-----------V--~-PGf~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGG  174 (211)
T cd00429         115 GTPVEVLEPYLDE-----VDLVLVM-S-----------V--N-PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG  174 (211)
T ss_pred             CCCHHHHHHHHHH-----HCEEEEE-E-----------E--C-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9998999999975-----1522798-7-----------4--6-8878875456799999999999986499859999678


Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf             89999999999839997545278770697899999
Q gi|254780434|r  296 ISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI  330 (362)
Q Consensus       296 I~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I  330 (362)
T Consensus       175 I~~-~~i~~l~~~Gad~~V~GS~-iF~~~d~~~~i  207 (211)
T cd00429         175 INL-ETIPLLAEAGADVLVAGSA-LFGSDDYAEAI  207 (211)
T ss_pred             CCH-HHHHHHHHCCCCEEEECHH-HHCCCCHHHHH
T ss_conf             598-9999999859999997937-75899999999