HHsearch alignment for GI: 254780434 and conserved domain: cd00452

>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.68  E-value=0.053  Score=33.29  Aligned_cols=156  Identities=16%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf             77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r   68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK  147 (362)
Q Consensus        68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~  147 (362)
T Consensus        19 ~~~~~al~~~Gi~~iEit-----------------------------l~t~~a~~~i~~l~~~~~~~~iGa---GTV~~~   66 (190)
T cd00452          19 LALAEALIEGGIRAIEIT-----------------------------LRTPGALEAIRALRKEFPEALIGA---GTVLTP   66 (190)
T ss_pred             HHHHHHHHHCCCCEEEEE-----------------------------CCCCHHHHHHHHHHHHCCCCEEEE---CCCCCH
T ss_conf             999999998699889996-----------------------------788029999999998689808965---234779


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf             67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r  148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD  227 (362)
Q Consensus       148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~  227 (362)
T Consensus        67 ~~~~------~a~~aGa~Fi----vsP~~~-------~----~v~~~a~----------~~~~~~iPGv~---Tp---sE  109 (190)
T cd00452          67 EQAD------AAIAAGAQFI----VSPGLD-------P----EVVKAAN----------RAGIPLLPGVA---TP---TE  109 (190)
T ss_pred             HHHH------HHHHCCCCEE----ECCCCC-------H----HHHHHHH----------HCCCCEECCCC---CH---HH
T ss_conf             9999------9998599899----737799-------9----9999999----------82996657879---99---99


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             99987644982999806655532345775446322113564542468999999974089748999678899999999998
Q gi|254780434|r  228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM  307 (362)
Q Consensus       228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~  307 (362)
T Consensus       110 -i~~A~~~G~~~vK~FPa------------~--~~---G-------~~~lkal~~pf-p~~~~~ptGGI~~-~N~~~yl~  162 (190)
T cd00452         110 -IMQALELGADIVKLFPA------------E--AV---G-------PAYIKALKGPF-PQVRFMPTGGVSL-DNAAEWLA  162 (190)
T ss_pred             -HHHHHHCCCCEEEECCC------------C--CC---C-------HHHHHHHHCCC-CCCCEEEECCCCH-HHHHHHHH
T ss_conf             -99999879998998955------------1--14---9-------99999985548-9993899679998-88999996


Q ss_pred             CCCCEEEECHHH
Q ss_conf             399975452787
Q gi|254780434|r  308 AGANLIQLYSAM  319 (362)
Q Consensus       308 aGAs~VQi~Tal  319 (362)
T Consensus       163 ~gv~avG~g~~l  174 (190)
T cd00452         163 AGVVAVGGGSLL  174 (190)
T ss_pred             CCCEEEEECHHC
T ss_conf             899899954125