HHsearch alignment for GI: 254780434 and conserved domain: cd02071
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.37 E-value=1.5 Score=23.57 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=47.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
T Consensus 31 i~lG~~~s~---eeiv~~A~~e~ad~IglSsL-------------------~g~h-~~~~~~l~~~L~e~G~~di~v~-v 86 (122)
T cd02071 31 IYTGLRQTP---EEIVEAAIQEDVDVIGLSSL-------------------SGGH-MTLFPEVIELLRELGAGDILVV-G 86 (122)
T ss_pred EECCCCCCH---HHHHHHHHHCCCCEEEEECC-------------------CCCH-HHHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 967998899---99999999739989999646-------------------5544-7899999999997699984699-9
Q ss_pred CCCCCHHHHHHHHHCCCCEE
Q ss_conf 78899999999998399975
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLI 313 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~V 313 (362)
T Consensus 87 GG~Ip~~d~~~l~~~Gv~~v 106 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEE
T ss_conf 45649899999997799889