HHsearch alignment for GI: 254780434 and conserved domain: cd02811
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.76 E-value=3.5e-16 Score=128.84 Aligned_cols=263 Identities=21% Similarity=0.306 Sum_probs=155.7
Q ss_pred CCCCCCCEEEECCEECCCCEEECC---CCCCC----HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 788963116888733599748534---68886----77988874036752410200136878998862688425554100
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAA---GYDKN----AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAa---G~dk~----~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362)
T Consensus 36 d~~~iDlst~~lG~~l~~P~~I~AMTGG~~~~~~iN~~LA~aA~~~gi~m-~vGSq~~---------------------- 92 (326)
T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAM-GVGSQRA---------------------- 92 (326)
T ss_pred CHHHCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EECCHHH----------------------
T ss_conf 86446265358973247875887555797556588999999999819977-8342288----------------------
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCCCCCHHH
Q ss_conf 00247777788999876410001210001104542467887765554206755269830333653----22110000234
Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNT----PGLRSLQKKKN 187 (362)
Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt----~g~~~~~~~~~ 187 (362)
T Consensus 93 --al~~~~~~~sf~vvR~~~p~~~l~aNiga~~l~~~~~~~~~~ai~~l~--AdaL~iHlN~~QE~~~peGDr~f~---- 164 (326)
T cd02811 93 --ALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIE--ADALAIHLNPLQEAVQPEGDRDFR---- 164 (326)
T ss_pred --HHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHCC--CCEEEEECCHHHHCCCCCCCCCHH----
T ss_conf --753921665678998758876278635803304568999999998557--885786446065400789898777----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3211112244455655312688517865-----05777748889999987644982999806655532345775446322
Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDG 262 (362)
Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~G 262 (362)
T Consensus 165 --~~~~~I------~~l~~~~~vPVIvKeVG~Gis~--------eda~~l~~~Gv~~IdVSghGGT-nf~~IE~~R~~d~ 227 (326)
T cd02811 165 --GWLERI------EELVKALSVPVIVKEVGFGISR--------ETAKRLADAGVKAIDVAGAGGT-SWARVENYRAKDS 227 (326)
T ss_pred --HHHHHH------HHHHHHCCCCEEEEECCCCCCH--------HHHHHHHHCCCCEEEECCCCCC-CHHHHHHHCCCCC
T ss_conf --899999------9999847998588524789999--------9999999679999997899997-5366531015673
Q ss_pred CC-CCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC---CCH----HHHHHHH
Q ss_conf 11-3564542---46899999997408974899967889999999999839997545278770---697----8999999
Q gi|254780434|r 263 GL-SGSPLFL---KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY---EGI----SLPKRII 331 (362)
Q Consensus 263 Gl-SG~~i~~---~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp----~~~~~I~ 331 (362)
T Consensus 228 ~~~~~~~l~dwGi~T~~sL~e~~~~-~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~ 306 (326)
T cd02811 228 DQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQII 306 (326)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 1337889886285569999999973-899819986887877999999995553365279999998548999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHH
Q ss_conf 9999999983899778961
Q gi|254780434|r 332 QGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 332 ~~L~~~l~~~G~~si~e~i 350 (362)
T Consensus 307 ~el~~~M~l~G~~~i~eLr 325 (326)
T cd02811 307 EELRTAMFLTGAKNLAELK 325 (326)
T ss_pred HHHHHHHHHHCCCCHHHHC
T ss_conf 9999999986899889974