HHsearch alignment for GI: 254780434 and conserved domain: cd02812
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.02 E-value=8e-05 Score=52.30 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 77774888999998764498299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 218 PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 218 Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
T Consensus 130 ~~~~~~~~~ayAlaae~lg~~~i-----------------YLE---gSGa~---v~~e~V~~vk~~l~-~~~LivGGGIr 185 (219)
T cd02812 130 TDLKPEDAAAYALAAEYLGMPIV-----------------YLE---YSGAY---GPPEVVRAVKKVLG-DTPLIVGGGIR 185 (219)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEE-----------------EEE---CCCCC---CCHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 79998999999999998299389-----------------995---68997---99999999998467-97099928979
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 9999999998399975452787706978999999
Q gi|254780434|r 298 STKDALDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 298 s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
T Consensus 186 s~e~a~~~~~AgAD~IVvGn~-iee~~~~~l~~v 218 (219)
T cd02812 186 SGEQAKEMAEAGADTIVVGNI-VEEDPNAALETV 218 (219)
T ss_pred CHHHHHHHHHCCCCEEEECCC-EEECHHHHHHHH
T ss_conf 999999999869999998872-240689997643