HHsearch alignment for GI: 254780434 and conserved domain: cd02929

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=91.86  E-value=0.75  Score=25.54  Aligned_cols=98  Identities=17%  Similarity=0.254  Sum_probs=56.2

Q ss_pred             CCCHHHHH-------HHHHHHHHCCCCEEEEE--CCC--CCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             77748889-------99998764498299980--665--55323457754463221-13564542468999999974089
Q gi|254780434|r  219 DLSEEELD-------DIAVEVLSHKVEGIIVS--NTT--LSRKGVQCSDNHEQDGG-LSGSPLFLKSTIALAKIRQRVGP  286 (362)
Q Consensus       219 d~~~~~i~-------~ia~~a~~~g~dGiv~~--NT~--~~~~~~~~~~~~~~~GG-lSG~~i~~~al~~i~~i~~~~~~  286 (362)
T Consensus       139 ~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR--~Rf~~Eii~aVr~~vg~  216 (370)
T cd02929         139 EMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENR--ARFWRETLEDTKDAVGD  216 (370)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHCC
T ss_conf             6899999999999999999999859898997711355999734774578777468988999--89999999999997199


Q ss_pred             CEEEE---------EECCCCCHHHHHHHHH---CCCCEEEECHH
Q ss_conf             74899---------9678899999999998---39997545278
Q gi|254780434|r  287 KIAII---------GTGGISSTKDALDKIM---AGANLIQLYSA  318 (362)
Q Consensus       287 ~i~II---------g~GGI~s~~Da~e~l~---aGAs~VQi~Ta  318 (362)
T Consensus       217 df~i~~R~s~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~vs~g  260 (370)
T cd02929         217 DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVG  260 (370)
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             87599998941256889998889999999997365797998855