HHsearch alignment for GI: 254780434 and conserved domain: cd02930

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.46  E-value=2.2e-11  Score=96.47  Aligned_cols=263  Identities=16%  Similarity=0.110  Sum_probs=154.0

Q ss_pred             EEEECCEECCCCEEECCC---CC---C----CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf             168887335997485346---88---8----6779888740367524102001368789988626884255541000024
Q gi|254780434|r   46 NTKVAGISLSNPLGMAAG---YD---K----NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF  115 (362)
Q Consensus        46 ~~~~~Gl~~~nPiglAaG---~d---k----~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl  115 (362)
T Consensus         4 P~kig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~-~g~~~~~~~~i~~d~-~i-----   76 (353)
T cd02930           4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNE-AGKLGPGGPVLNSPR-QA-----   76 (353)
T ss_pred             CCEECCEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC-CCCCCCCCCCCCCHH-HH-----
T ss_conf             83289999788678557463436799786999999999976786348976289880-417699976327999-99-----


Q ss_pred             CCCCHHHHHHHHHHHH---------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC-CCCCEE
Q ss_conf             7777788999876410---------------0012100011045--------42----467887765554206-755269
Q gi|254780434|r  116 NNAGYHTVFSRLSKIQ---------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF-TIASYF  167 (362)
Q Consensus       116 ~N~G~~~~~~~l~~~~---------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~-~~aD~i  167 (362)
T Consensus        77 --~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgV  154 (353)
T cd02930          77 --AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGV  154 (353)
T ss_pred             --HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             --999999999997699799973147866689888189877788899988659999999999999999999998299989


Q ss_pred             EEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC------CCHHHHHHHHH
Q ss_conf             830---------333653--2211000023432111122444556553126885178650577------77488899999
Q gi|254780434|r  168 TIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD------LSEEELDDIAV  230 (362)
Q Consensus       168 EiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd------~~~~~i~~ia~  230 (362)
T Consensus       155 EIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~---~vg~d~~v~~Ris~~d~~~~G~~~~e~~~~~~  231 (353)
T cd02930         155 EIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA---AVGEDFIIIYRLSMLDLVEGGSTWEEVVALAK  231 (353)
T ss_pred             EECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             962567614877338754788574579878887999999999999---70998749997360126899989999999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC-
Q ss_conf             8764498299980665553234577544632211356454246899999997408974899967889999999999839-
Q gi|254780434|r  231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG-  309 (362)
Q Consensus       231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG-  309 (362)
T Consensus       232 ~l~~~GvD~i~vs~G--~~~-~~~~~~~-----~~~p--~g~~~~~a~~ir~~~--~~Pvi~~G~i~~p~~ae~~l~~g~  299 (353)
T cd02930         232 ALEAAGADILNTGIG--WHE-ARVPTIA-----TSVP--RGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGD  299 (353)
T ss_pred             HHHHCCCCEEEECCC--CCC-CCCCCCC-----CCCC--CHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHCCC
T ss_conf             999819999996377--444-6687533-----4577--236699999988754--834896599798999999998799


Q ss_pred             CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf             997545278770697899999999
Q gi|254780434|r  310 ANLIQLYSAMIYEGISLPKRIIQG  333 (362)
Q Consensus       310 As~VQi~Tali~~Gp~~~~~I~~~  333 (362)
T Consensus       300 aD~V~~gR~liad-Pdl~~K~~~G  322 (353)
T cd02930         300 ADMVSMARPFLAD-PDFVAKAAAG  322 (353)
T ss_pred             CCHHHHHHHHHHC-CHHHHHHHCC
T ss_conf             6247840998769-3699999818