HHsearch alignment for GI: 254780434 and conserved domain: cd02930
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.46 E-value=2.2e-11 Score=96.47 Aligned_cols=263 Identities=16% Similarity=0.110 Sum_probs=154.0
Q ss_pred EEEECCEECCCCEEECCC---CC---C----CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 168887335997485346---88---8----6779888740367524102001368789988626884255541000024
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---YD---K----NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~d---k----~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
T Consensus 4 P~kig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~-~g~~~~~~~~i~~d~-~i----- 76 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNE-AGKLGPGGPVLNSPR-QA----- 76 (353)
T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC-CCCCCCCCCCCCCHH-HH-----
T ss_conf 83289999788678557463436799786999999999976786348976289880-417699976327999-99-----
Q ss_pred CCCCHHHHHHHHHHHH---------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC-CCCCEE
Q ss_conf 7777788999876410---------------0012100011045--------42----467887765554206-755269
Q gi|254780434|r 116 NNAGYHTVFSRLSKIQ---------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF-TIASYF 167 (362)
Q Consensus 116 ~N~G~~~~~~~l~~~~---------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~-~~aD~i 167 (362)
T Consensus 77 --~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgV 154 (353)
T cd02930 77 --AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGV 154 (353)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf --999999999997699799973147866689888189877788899988659999999999999999999998299989
Q ss_pred EEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC------CCHHHHHHHHH
Q ss_conf 830---------333653--2211000023432111122444556553126885178650577------77488899999
Q gi|254780434|r 168 TIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD------LSEEELDDIAV 230 (362)
Q Consensus 168 EiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd------~~~~~i~~ia~ 230 (362)
T Consensus 155 EIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~---~vg~d~~v~~Ris~~d~~~~G~~~~e~~~~~~ 231 (353)
T cd02930 155 EIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA---AVGEDFIIIYRLSMLDLVEGGSTWEEVVALAK 231 (353)
T ss_pred EECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 962567614877338754788574579878887999999999999---70998749997360126899989999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC-
Q ss_conf 8764498299980665553234577544632211356454246899999997408974899967889999999999839-
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG- 309 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG- 309 (362)
T Consensus 232 ~l~~~GvD~i~vs~G--~~~-~~~~~~~-----~~~p--~g~~~~~a~~ir~~~--~~Pvi~~G~i~~p~~ae~~l~~g~ 299 (353)
T cd02930 232 ALEAAGADILNTGIG--WHE-ARVPTIA-----TSVP--RGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHHHCCCCEEEECCC--CCC-CCCCCCC-----CCCC--CHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 999819999996377--444-6687533-----4577--236699999988754--834896599798999999998799
Q ss_pred CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 997545278770697899999999
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
T Consensus 300 aD~V~~gR~liad-Pdl~~K~~~G 322 (353)
T cd02930 300 ADMVSMARPFLAD-PDFVAKAAAG 322 (353)
T ss_pred CCHHHHHHHHHHC-CHHHHHHHCC
T ss_conf 6247840998769-3699999818