HHsearch alignment for GI: 254780434 and conserved domain: cd02940
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=0 Score=497.23 Aligned_cols=274 Identities=23% Similarity=0.353 Sum_probs=228.0
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCC-CCCCCCCCCCEEEEECCCCCEEECCCCC----
Q ss_conf 31168887335997485346-88867798887403675241020013-6878998862688425554100002477----
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTP-HPQAGNPRPRVFRLTKDRAIINKLGFNN---- 117 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~-~p~~GNp~PR~~r~~~~~~iiN~~Gl~N---- 117 (362)
T Consensus 1 dL~t~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~--~~~~g~~n~~~~ 78 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSG--RGQIGFNNIELI 78 (299)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCH--HHHCCCCCCHHH
T ss_conf 998788999889986878778998999999999879888991568988788899998789887662--552133784012
Q ss_pred --CCHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCC-----CCHH
Q ss_conf --777889998764100---012100011045424678877655542067-55269830333653221100-----0023
Q gi|254780434|r 118 --AGYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSL-----QKKK 186 (362)
Q Consensus 118 --~G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~-----~~~~ 186 (362)
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~~-~---~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~ 154 (299)
T cd02940 79 SEKPLEYWLKEIRELKKDFPDKILIASIMCEY-N---KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPE 154 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-C---HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH
T ss_conf 12029999999999875279973798851789-8---7899999999987188889982678898761234555244999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CC
Q ss_conf 4321111224445565531268851786505777748889999987644982999806655532345775--------44
Q gi|254780434|r 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD--------NH 258 (362)
Q Consensus 187 ~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~--------~~ 258 (362)
T Consensus 155 ~l~~i~~~v~---------~~~~~Pi~vKLsP~~~--~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~ 223 (299)
T cd02940 155 LVEEICRWVR---------EAVKIPVIAKLTPNIT--DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGK 223 (299)
T ss_pred HHHHHHHHHH---------HHCCCCEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999998---------6247864896288715--4999999999859989999766677565442235666564567
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 6322113564542468999999974089748999678899999999998399975452787706978999999999
Q gi|254780434|r 259 EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 259 ~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
T Consensus 224 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~gL 299 (299)
T cd02940 224 TTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 7778455878899999999999996489977899899599999999998499899998999980989999997219