HHsearch alignment for GI: 254780434 and conserved domain: cd04724
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.20 E-value=0.00026 Score=48.84 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=111.5
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
T Consensus 6 ~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aD--GpvIq-~A~~~aL~~--g---~~~~~~~~~~~~~r~~~~~ 77 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVAD--GPVIQ-AASERALAN--G---VTLKDVLELVKEIRKKNTI 77 (242)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--C---CCHHHHHHHHHHHHHCCCC
T ss_conf 73778997999999999997699999978998887765--89999-999999976--9---9499999999998734798
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
T Consensus 78 pivlM~Y~N~i~~~G~e~F~~~~~~~G--v~Gvii----pDLP~-------ee~~~~~~~~~----------~~~i~~I~ 134 (242)
T cd04724 78 PIVLMGYYNPILQYGLERFLRDAKEAG--VDGLII----PDLPP-------EEAEEFREAAK----------EYGLDLIF 134 (242)
T ss_pred CEEEEEECHHHHHHCHHHHHHHHHHCC--CCEEEE----CCCCH-------HHHHHHHHHHH----------HCCCEEEE
T ss_conf 889998445766528999999999759--975870----69995-------78468999998----------65983889
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
T Consensus 135 lvsPtt~~~ri~~i~~~-----s~gfiY~vs~---~GvT--------G--~~~~~~~~~~~~i~~ik~~t--~~Pv-~vG 193 (242)
T cd04724 135 LVAPTTPDERIKKIAEL-----ASGFIYYVSR---TGVT--------G--ARTELPDDLKELIKRIRKYT--DLPI-AVG 193 (242)
T ss_pred EECCCCCHHHHHHHHHH-----CCCEEEEEEC---CCCC--------C--CCCCCHHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf 96898878999999974-----7984999857---7777--------8--77556499999999998716--8974-874
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
T Consensus 194 FGI~~~e~v~~~~~~-aDGvIVGSa~V~ 220 (242)
T cd04724 194 FGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred CCCCCHHHHHHHHHH-CCEEEECHHHHH
T ss_conf 387999999999965-999998789999