HHsearch alignment for GI: 254780434 and conserved domain: cd04724

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.20  E-value=0.00026  Score=48.84  Aligned_cols=209  Identities=22%  Similarity=0.282  Sum_probs=111.5

Q ss_pred             ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf             5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r   60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS  134 (362)
Q Consensus        60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~  134 (362)
T Consensus         6 ~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aD--GpvIq-~A~~~aL~~--g---~~~~~~~~~~~~~r~~~~~   77 (242)
T cd04724           6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVAD--GPVIQ-AASERALAN--G---VTLKDVLELVKEIRKKNTI   77 (242)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--C---CCHHHHHHHHHHHHHCCCC
T ss_conf             73778997999999999997699999978998887765--89999-999999976--9---9499999999998734798


Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r  135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL  214 (362)
Q Consensus       135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v  214 (362)
T Consensus        78 pivlM~Y~N~i~~~G~e~F~~~~~~~G--v~Gvii----pDLP~-------ee~~~~~~~~~----------~~~i~~I~  134 (242)
T cd04724          78 PIVLMGYYNPILQYGLERFLRDAKEAG--VDGLII----PDLPP-------EEAEEFREAAK----------EYGLDLIF  134 (242)
T ss_pred             CEEEEEECHHHHHHCHHHHHHHHHHCC--CCEEEE----CCCCH-------HHHHHHHHHHH----------HCCCEEEE
T ss_conf             889998445766528999999999759--975870----69995-------78468999998----------65983889


Q ss_pred             ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r  215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG  294 (362)
Q Consensus       215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G  294 (362)
T Consensus       135 lvsPtt~~~ri~~i~~~-----s~gfiY~vs~---~GvT--------G--~~~~~~~~~~~~i~~ik~~t--~~Pv-~vG  193 (242)
T cd04724         135 LVAPTTPDERIKKIAEL-----ASGFIYYVSR---TGVT--------G--ARTELPDDLKELIKRIRKYT--DLPI-AVG  193 (242)
T ss_pred             EECCCCCHHHHHHHHHH-----CCCEEEEEEC---CCCC--------C--CCCCCHHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf             96898878999999974-----7984999857---7777--------8--77556499999999998716--8974-874


Q ss_pred             -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             -889999999999839997545278770
Q gi|254780434|r  295 -GISSTKDALDKIMAGANLIQLYSAMIY  321 (362)
Q Consensus       295 -GI~s~~Da~e~l~aGAs~VQi~Tali~  321 (362)
T Consensus       194 FGI~~~e~v~~~~~~-aDGvIVGSa~V~  220 (242)
T cd04724         194 FGISTPEQAAEVAKY-ADGVIVGSALVK  220 (242)
T ss_pred             CCCCCHHHHHHHHHH-CCEEEECHHHHH
T ss_conf             387999999999965-999998789999