HHsearch alignment for GI: 254780434 and conserved domain: cd04728
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.48 E-value=6.2e-05 Score=53.07 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=120.2
Q ss_pred EECCEECCCCEEECCCCCCCHH-HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHH
Q ss_conf 8887335997485346888677-988874036752410200136878998862688425554100002477777889998
Q gi|254780434|r 48 KVAGISLSNPLGMAAGYDKNAE-VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSR 126 (362)
Q Consensus 48 ~~~Gl~~~nPiglAaG~dk~~~-~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~ 126 (362)
T Consensus 2 ~Igg~~f~SRLilGTgky~s~~~~~~ai~aSgaeiv---TVAlR-----------R----------~~~~~~~~~~~l~~ 57 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKYPSPAIMKEAIEASGAEIV---TVALR-----------R----------VNIGDPGGESFLDL 57 (248)
T ss_pred EECCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------E----------CCCCCCCCHHHHHH
T ss_conf 789988774337864899999999999999689769---99986-----------3----------05788885268987
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410001210001104542467887765554206755269830-33365322110000234321111224445565531
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
T Consensus 58 i~~~~--~~~LPNTAGc~ta~EAvr-~A~laRE~~-~t~~IKLEVi~D~~-----------~LlPD~~eTl~Aae~Lv~~ 122 (248)
T cd04728 58 LDKSG--YTLLPNTAGCRTAEEAVR-TARLAREAL-GTDWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKE 122 (248)
T ss_pred HHHCC--CEECCCCCCCCCHHHHHH-HHHHHHHHH-CCCEEEEEEECCCC-----------CCCCCHHHHHHHHHHHHHC
T ss_conf 52338--668765401167999999-999999984-89869999817976-----------7798868999999999988
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
T Consensus 123 G---F~Vl----pY~~~D--~v~akrLe~~Gc~avMP---------lgsPI-G------Sg~Gl~n--~~~l~~i~e~~- 174 (248)
T cd04728 123 G---FTVL----PYCTDD--PVLAKRLEDAGCAAVMP---------LGSPI-G------SGQGLLN--PYNLRIIIERA- 174 (248)
T ss_pred C---CEEE----EECCCC--HHHHHHHHHCCCEEEEE---------CCCCC-C------CCCCCCC--HHHHHHHHHHC-
T ss_conf 9---9897----867889--99999999749534520---------45643-4------7988799--99999999847-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CHH
Q ss_conf 9748999678899999999998399975452787706-978
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-GIS 325 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-Gp~ 325 (362)
T Consensus 175 -~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTAIA~A~dPv 214 (248)
T cd04728 175 -DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPV 214 (248)
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf -9988984799975678999872655334546877169989