HHsearch alignment for GI: 254780434 and conserved domain: cd04734

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.46  E-value=3e-11  Score=95.60  Aligned_cols=261  Identities=18%  Similarity=0.179  Sum_probs=151.5

Q ss_pred             EEEECCEECCCCEEECCC---CCCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf             168887335997485346---8886-------779888740367524102001368789988626884255541000024
Q gi|254780434|r   46 NTKVAGISLSNPLGMAAG---YDKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF  115 (362)
Q Consensus        46 ~~~~~Gl~~~nPiglAaG---~dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl  115 (362)
T Consensus         4 Pikig~~~lkNRiv~~pm~~~~~~~G~~~~~~~~~y~~rA~gG~GlIi~~~~~v~~~-~~~~~~~------------~~i   70 (343)
T cd04734           4 PLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPS-DSPAFGN------------LNA   70 (343)
T ss_pred             CEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCC------------CCC
T ss_conf             804899998883254546788688998999999999999678983799700676465-5689998------------766


Q ss_pred             CC----CCHHHHHHHHHHHHHCCCCCCEEE---------------------CC--------CCC----HHHHHHHHHHHH
Q ss_conf             77----777889998764100012100011---------------------04--------542----467887765554
Q gi|254780434|r  116 NN----AGYHTVFSRLSKIQPTSPIGINLG---------------------AN--------KDS----KDFILDYVSGIR  158 (362)
Q Consensus       116 ~N----~G~~~~~~~l~~~~~~~pi~vsI~---------------------~~--------~~s----~~~~~dy~~~~~  158 (362)
T Consensus        71 ~~d~~i~~~k~l~~~vH~~--G~~i~~QL~H~Gr~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~  148 (343)
T cd04734          71 SDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR  148 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999735--88189871157766676679986268888866567987944899999999999999999


Q ss_pred             HHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------
Q ss_conf             206-755269830---------333653--22110000234321111224445565531268851786505777------
Q gi|254780434|r  159 LFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL------  220 (362)
Q Consensus       159 ~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~------  220 (362)
T Consensus       149 ~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~---~vg~~f~i~~Ris~~~~~~~g~  225 (343)
T cd04734         149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRA---AVGPDFIVGIRISGDEDTEGGL  225 (343)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCC
T ss_conf             9997399889844577746998469855899676798889998999999999999---8198776158867623568989


Q ss_pred             CHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
Q ss_conf             7488899999876449-829998066555323457754463221135645424689999999740897489996788999
Q gi|254780434|r  221 SEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST  299 (362)
Q Consensus       221 ~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~  299 (362)
T Consensus       226 ~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~----~p~~~~~--~g~~~~~a~~ik~~~--~~pvi~~G~i~~~  297 (343)
T cd04734         226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHV----VPSMGMP--PGPFLPLAARIKQAV--DLPVFHAGRIRDP  297 (343)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHC----CCCCCCC--CCCCHHHHHHHHHHC--CCCEEEECCCCCH
T ss_conf             9899999999999669976899656754332221100----6876677--643488999999972--9859997998999


Q ss_pred             HHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf             9999999839-997545278770697899999999
Q gi|254780434|r  300 KDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG  333 (362)
Q Consensus       300 ~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~  333 (362)
T Consensus       298 ~~ae~~l~~g~~D~V~~gR~~lad-Pd~v~k~~~G  331 (343)
T cd04734         298 AEAEQALAAGHADMVGMTRAHIAD-PHLVAKAREG  331 (343)
T ss_pred             HHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHCC
T ss_conf             999999987996216978999978-1199999768