HHsearch alignment for GI: 254780434 and conserved domain: cd04736
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.57 E-value=3e-11 Score=95.66 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=163.5
Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEECC-C----CCCCHH--HHHHHHHCCCCEEEC--CCC
Q ss_conf 78899999999-62011104-6788963116888733599748534-6----888677--988874036752410--200
Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA-G----YDKNAE--VPIELLKLGFGFVEI--GTV 87 (362)
Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa-G----~dk~~~--~~~~l~~~G~G~v~~--kti 87 (362)
T Consensus 26 e~t~~~N~~af~~~~l~PrvL~dv~~~d~st~llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~ 105 (361)
T cd04736 26 EKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNM 105 (361)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 59999999999847576622358878997631588405785478763577660888429999999987987896799999
Q ss_pred CCCCC-CCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEE----CCCC-------------CHH
Q ss_conf 13687-899886268842555410000247777-7889998764100012100011----0454-------------246
Q gi|254780434|r 88 TPHPQ-AGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLG----ANKD-------------SKD 148 (362)
Q Consensus 88 t~~p~-~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~----~~~~-------------s~~ 148 (362)
T Consensus 106 s~EeVa~~~~g~~wfQLY~----------~~r~~~~~li~RA~~aG~~-alvlTvD~pv~G~Rerd~rngf~~P~~~~~~ 174 (361)
T cd04736 106 SIEDVARQADGDLWFQLYV----------VHRELAELLVKRALAAGYT-TLVLTTDVAVNGYRERDLRNGFAIPFRYTPR 174 (361)
T ss_pred CHHHHHHHCCCCEEEEEEE----------CCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 9999986259984799887----------2879999999999985998-6899507888788835432256788655677
Q ss_pred HHHHHH----HHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCH
Q ss_conf 788776----5554206755269830333653221100002343211112244455655312688517865--0577774
Q gi|254780434|r 149 FILDYV----SGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSE 222 (362)
Q Consensus 149 ~~~dy~----~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~ 222 (362)
T Consensus 175 ~~~~~~~~P~w~~~~~~~g~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tW~di~wlr~~w~~plilKGI~~~---- 247 (361)
T cd04736 175 VLLDGILHPRWLLRFLRNGMP-QLANFASDDAIDVE--VQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTA---- 247 (361)
T ss_pred HHHHHCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCH--HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCH----
T ss_conf 887751593889976502773-10234677777705--78899884368899999999999866997455214899----
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
T Consensus 248 ----eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------a~~~id~Lp~I~~av~--~~V~~DgGIRrG~DV 304 (361)
T cd04736 248 ----EDAKRCIELGADGVILSNH----------GGRQLDD-------AIAPIEALAEIVAATY--KPVLIDSGIRRGSDI 304 (361)
T ss_pred ----HHHHHHHHCCCCEEEECCC----------CCCCCCC-------CCCHHHHHHHHHHHHC--CEEEEECCCCCHHHH
T ss_conf ----9999998769999997588----------6333577-------7414777999999719--949994898878999
Q ss_pred HHHHHCCCCEEEECHHHHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99998399975452787706----97----89999999999999983899778961
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
T Consensus 305 ~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~ 360 (361)
T cd04736 305 VKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99997799989877899998771109999999999999999999985899867769