HHsearch alignment for GI: 254780434 and conserved domain: cd04738

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00  E-value=0  Score=695.02  Aligned_cols=321  Identities=54%  Similarity=0.836  Sum_probs=301.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCC
Q ss_conf             999750896788999999996201110---46788963116888733599748534688867798887403675241020
Q gi|254780434|r   10 LRGLTHLDPEIAHHLSIVALKSGLLSF---FPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGT   86 (362)
Q Consensus        10 ~~~l~~~~pe~ah~~~~~~~~~~~~~~---~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~kt   86 (362)
T Consensus         1 rp~l~~l~pE~aH~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~Gl~f~nPiGlAAGfDKn~~~~~~~~~lGfGfvevGT   80 (327)
T cd04738           1 RPLLFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAEAIDALLALGFGFVEVGT   80 (327)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             98011499799999999999850647640103689966556888755699586545889885899999966986799714


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf             0136878998862688425554100002477777889998764100-01210001104542--46788776555420675
Q gi|254780434|r   87 VTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGIRLFFTI  163 (362)
Q Consensus        87 it~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~  163 (362)
T Consensus        81 VT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~  160 (327)
T cd04738          81 VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY  160 (327)
T ss_pred             CCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             36888889999857974675401100458717699999999840456871799985047882676899999999985355


Q ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             52698303336532211000023432111122444556553126885178650577774888999998764498299980
Q gi|254780434|r  164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS  243 (362)
Q Consensus       164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~  243 (362)
T Consensus       161 aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~----~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~t  236 (327)
T cd04738         161 ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT  236 (327)
T ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             778999546889845100268899999999999999853----7788669981799766789999999997399789995


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             66555323457754463221135645424689999999740897489996788999999999983999754527877069
Q gi|254780434|r  244 NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG  323 (362)
Q Consensus       244 NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G  323 (362)
T Consensus       237 NTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy~G  316 (327)
T cd04738         237 NTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEG  316 (327)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             88555421245655566686364067899999999999974999819998897999999999986996998768989319


Q ss_pred             HHHHHHHHHHH
Q ss_conf             78999999999
Q gi|254780434|r  324 ISLPKRIIQGL  334 (362)
Q Consensus       324 p~~~~~I~~~L  334 (362)
T Consensus       317 P~li~~I~~~L  327 (327)
T cd04738         317 PGLVKRIKREL  327 (327)
T ss_pred             CHHHHHHHHHC
T ss_conf             06999998219