HHsearch alignment for GI: 254780434 and conserved domain: cd04738
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=0 Score=695.02 Aligned_cols=321 Identities=54% Similarity=0.836 Sum_probs=301.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCC
Q ss_conf 999750896788999999996201110---46788963116888733599748534688867798887403675241020
Q gi|254780434|r 10 LRGLTHLDPEIAHHLSIVALKSGLLSF---FPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGT 86 (362)
Q Consensus 10 ~~~l~~~~pe~ah~~~~~~~~~~~~~~---~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~kt 86 (362)
T Consensus 1 rp~l~~l~pE~aH~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~Gl~f~nPiGlAAGfDKn~~~~~~~~~lGfGfvevGT 80 (327)
T cd04738 1 RPLLFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAEAIDALLALGFGFVEVGT 80 (327)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 98011499799999999999850647640103689966556888755699586545889885899999966986799714
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 0136878998862688425554100002477777889998764100-01210001104542--46788776555420675
Q gi|254780434|r 87 VTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGIRLFFTI 163 (362)
Q Consensus 87 it~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~ 163 (362)
T Consensus 81 VT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~ 160 (327)
T cd04738 81 VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY 160 (327)
T ss_pred CCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 36888889999857974675401100458717699999999840456871799985047882676899999999985355
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 52698303336532211000023432111122444556553126885178650577774888999998764498299980
Q gi|254780434|r 164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS 243 (362)
Q Consensus 164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~ 243 (362)
T Consensus 161 aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~----~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~t 236 (327)
T cd04738 161 ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 778999546889845100268899999999999999853----7788669981799766789999999997399789995
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 66555323457754463221135645424689999999740897489996788999999999983999754527877069
Q gi|254780434|r 244 NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 244 NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
T Consensus 237 NTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy~G 316 (327)
T cd04738 237 NTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEG 316 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 88555421245655566686364067899999999999974999819998897999999999986996998768989319
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999999999
Q gi|254780434|r 324 ISLPKRIIQGL 334 (362)
Q Consensus 324 p~~~~~I~~~L 334 (362)
T Consensus 317 P~li~~I~~~L 327 (327)
T cd04738 317 PGLVKRIKREL 327 (327)
T ss_pred CHHHHHHHHHC
T ss_conf 06999998219