HHsearch alignment for GI: 254780434 and conserved domain: cd04739

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00  E-value=0  Score=482.43  Aligned_cols=295  Identities=20%  Similarity=0.254  Sum_probs=240.7

Q ss_pred             CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCC------CCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf             31168887335997485346-888677988874036752410200136------87899886268842555410000247
Q gi|254780434|r   44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPH------PQAGNPRPRVFRLTKDRAIINKLGFN  116 (362)
Q Consensus        44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~------p~~GNp~PR~~r~~~~~~iiN~~Gl~  116 (362)
T Consensus         1 DLst~~~Gl~l~NPi~~ASg~~~~~~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~   80 (325)
T cd04739           1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY   80 (325)
T ss_pred             CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf             98579899967998885652568999999999985967999795674234567788898888998871121403321455


Q ss_pred             CCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCHHHHHHHHH
Q ss_conf             7777889998764100--012100011045424678877655542067552698303336532211-0000234321111
Q gi|254780434|r  117 NAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR-SLQKKKNLERLLI  193 (362)
Q Consensus       117 N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~-~~~~~~~l~~~l~  193 (362)
T Consensus        81 n~g~e~~l~~i~~~~~~~~~pvI~Si~g~--s~ee~~~~a~~~~~~g--ad~lElNls~~~~~~~~~~~~~~~~~~~iv~  156 (325)
T cd04739          81 NLGPEEYLELIRRAKRAVSIPVIASLNGV--SAGGWVDYARQIEEAG--ADALELNIYALPTDPDISGAEVEQRYLDILR  156 (325)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             75899999999998753598759871689--9899999999997649--9879996566788855442106889999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf             22444556553126885178650577774888999998764498299980665553234577544-63221135645424
Q gi|254780434|r  194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNH-EQDGGLSGSPLFLK  272 (362)
Q Consensus       194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~-~~~GGlSG~~i~~~  272 (362)
T Consensus       157 ~V---------k~~~~~Pv~vKLsP~~~--di~~ia~aa~~~GAdgi~liNT~~~~~-id~~~~~~~~~~~lSg~~~~~~  224 (325)
T cd04739         157 AV---------KSAVTIPVAVKLSPFFS--ALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRL  224 (325)
T ss_pred             HH---------HHCCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCEEECCCCCCCCCCCHH
T ss_conf             99---------86078866995399830--099999999975998899735766564-2167641536877457530068


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf             68999999974089748999678899999999998399975452787706978999999999999998389977896169
Q gi|254780434|r  273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS  352 (362)
Q Consensus       273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~  352 (362)
T Consensus       225 alr~v~~~~~~~--~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i~~~i~~eL~~~m~~~G~~si~e~~Gk  302 (325)
T cd04739         225 PLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS  302 (325)
T ss_pred             HHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf             899999996468--989888889598999999998098876143234641837999999999999998399979996273


Q ss_pred             CCHH
Q ss_conf             7526
Q gi|254780434|r  353 YTEY  356 (362)
Q Consensus       353 ~~~~  356 (362)
T Consensus       303 l~~~  306 (325)
T cd04739         303 MSQK  306 (325)
T ss_pred             CCCC
T ss_conf             4545