HHsearch alignment for GI: 254780434 and conserved domain: cd04741
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=0 Score=515.89 Aligned_cols=278 Identities=25% Similarity=0.310 Sum_probs=242.0
Q ss_pred EEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 68887335997485346-88867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 47 TKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 47 ~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
T Consensus 1 vt~~Gl~~~NPi~~AaG~~~~~~e~~~~l~~~G~G~v~~kTit~~p~~GNp~PR~~r~~--~~~iN~~G~~n~G~~~~~~ 78 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFP--LGSINSLGLPNLGLDYYLE 78 (294)
T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCCHHHHHH
T ss_conf 90689828997887458999999999999976960999284387677799998488555--1466644478848899999
Q ss_pred HHHHHH-----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 876410-----0012100011045424678877655542067552698303336532211000-0234321111224445
Q gi|254780434|r 126 RLSKIQ-----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQTR 199 (362)
Q Consensus 126 ~l~~~~-----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~~ 199 (362)
T Consensus 79 ~l~~~~~~~~~~~~pvi~si~g~--~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~~v~~-- 154 (294)
T cd04741 79 YIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA-- 154 (294)
T ss_pred HHHHHHHHCCCCCCCEEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH--
T ss_conf 99998654655587089989998--36799999999865225564799970378988731001399999999999984--
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC------CCCCCCCCCCCCCCCCCCH
Q ss_conf 565531268851786505777748889999987644--98299980665553234------5775446322113564542
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSH--KVEGIIVSNTTLSRKGV------QCSDNHEQDGGLSGSPLFL 271 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~--g~dGiv~~NT~~~~~~~------~~~~~~~~~GGlSG~~i~~ 271 (362)
T Consensus 155 -------~~~~Pv~vKlsP~~~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p 227 (294)
T cd04741 155 -------AYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHP 227 (294)
T ss_pred -------CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf -------1578559972898887899999999865788747999880367763335776564334556666667852158
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 468999999974089748999678899999999998399975452787706978999999999999
Q gi|254780434|r 272 KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDF 337 (362)
Q Consensus 272 ~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~ 337 (362)
T Consensus 228 ~al~~v~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~el 293 (294)
T cd04741 228 LALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDI 293 (294)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999997499987999899799999999998399799997999970929999999879965