HHsearch alignment for GI: 254780434 and conserved domain: pfam03060

>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.24  E-value=2.5e-10  Score=89.37  Aligned_cols=90  Identities=17%  Similarity=0.304  Sum_probs=68.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r  210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA  289 (362)
Q Consensus       210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~  289 (362)
T Consensus       138 ~~v~~~v~---s----~~~A~~a~~~G~D~iV~qG~--------------eAGGH~G~~~~~~~~~L~~~v~~~~--~iP  194 (330)
T pfam03060       138 TKVIPTVS---S----AKEARKAEAAGADAVVAQGP--------------EAGGHRGTEVGTGTFLLVPTVVDAV--DIP  194 (330)
T ss_pred             CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf             98999818---9----99999999819998999667--------------6677788877730777789999871--697


Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             999678899999999998399975452787706
Q gi|254780434|r  290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE  322 (362)
Q Consensus       290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~  322 (362)
T Consensus       195 vIaAGGI~dg~~iaaalalGA~gV~mGTrFlat  227 (330)
T pfam03060       195 VIAAGGIADGRGIAAALALGAEGVQIGTRFLAT  227 (330)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEECCEEEEC
T ss_conf             785266289999999996799899971300115