HHsearch alignment for GI: 254780434 and conserved domain: pfam03060
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.24 E-value=2.5e-10 Score=89.37 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=68.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
T Consensus 138 ~~v~~~v~---s----~~~A~~a~~~G~D~iV~qG~--------------eAGGH~G~~~~~~~~~L~~~v~~~~--~iP 194 (330)
T pfam03060 138 TKVIPTVS---S----AKEARKAEAAGADAVVAQGP--------------EAGGHRGTEVGTGTFLLVPTVVDAV--DIP 194 (330)
T ss_pred CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf 98999818---9----99999999819998999667--------------6677788877730777789999871--697
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 999678899999999998399975452787706
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
T Consensus 195 vIaAGGI~dg~~iaaalalGA~gV~mGTrFlat 227 (330)
T pfam03060 195 VIAAGGIADGRGIAAALALGAEGVQIGTRFLAT 227 (330)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCEEEEC
T ss_conf 785266289999999996799899971300115