HHsearch alignment for GI: 254780434 and conserved domain: pfam09370
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.54 E-value=0.41 Score=27.28 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=95.2
Q ss_pred CCEE-ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC--CCCCHHHHHHHHHHHHH
Q ss_conf 9748-53468886779888740367524102001368789988626884255541000024--77777889998764100
Q gi|254780434|r 56 NPLG-MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF--NNAGYHTVFSRLSKIQP 132 (362)
Q Consensus 56 nPig-lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl--~N~G~~~~~~~l~~~~~ 132 (362)
T Consensus 15 ~pIigagaGtGls---AK~ae~gGaDlIi~ynsGr-----------fRm~G~gSlagllpygdaN~iv~ema~Evlpvv~ 80 (268)
T pfam09370 15 EPIIGAGAGTGLS---AKCEEAGGADLILIYNSGR-----------YRMAGRGSLAGLLPYGNANEIVLEMAREVLPVVK 80 (268)
T ss_pred CCEEEEECCCCHH---HHHHHHCCCCEEEEECCCH-----------HHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9669973251165---7899857986998615403-----------4435883131201356576999999988875535
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCC--HHHHH--HHHHHHHHHHHHHHHHC
Q ss_conf 0121000110454246788776555420675526983033365322--110000--23432--11112244455655312
Q gi|254780434|r 133 TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG--LRSLQK--KKNLE--RLLIHVMQTREEEKIKT 206 (362)
Q Consensus 133 ~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g--~~~~~~--~~~l~--~~l~~v~~~~~~~~~~~ 206 (362)
T Consensus 81 ~tPViaGv~~tDP~~~-~~~~L~~l~~~G--fs-GV~Nf--PTvglidG~fR~~LEetGmgy~~EVEmIr~A~~------ 148 (268)
T pfam09370 81 HTPVLAGVCGTDPFRD-MDRFLDELKEMG--FA-GVQNF--PTVGLIDGEFRQNLEETGMGYDLEVEMIRLAHE------ 148 (268)
T ss_pred CCCEEEECCCCCCCCC-HHHHHHHHHHHC--CC-CEEEC--CCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHH------
T ss_conf 8875876158897452-999999999719--77-44438--822033518887788808867999999999997------
Q ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHH---HHH
Q ss_conf 68851786505777-748889999987644982999806655532345775446322113564---54246899---999
Q gi|254780434|r 207 GKFVPIFLKISPDL-SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP---LFLKSTIA---LAK 279 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~-~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~---i~~~al~~---i~~ 279 (362)
T Consensus 149 -~dl---~T~-~yvf~~e~a~~----Ma~AGaDiIv~H-------------~GlT~gG~iG~~~a~sl~~a~~~~~~i~~ 206 (268)
T pfam09370 149 -KGL---LTT-PYVFNVEEARA----MAEAGADIIVAH-------------MGLTTGGTIGADTALSLDDCVELINAIAR 206 (268)
T ss_pred -CCC---CCC-CEECCHHHHHH----HHHCCCCEEEEC-------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -798---333-13268999999----997499899976-------------77677767467776789999999999999
Q ss_pred HHHHCCCCEEEEEEC-CCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 997408974899967-8899999999998399975452787706
Q gi|254780434|r 280 IRQRVGPKIAIIGTG-GISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 280 i~~~~~~~i~IIg~G-GI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
T Consensus 207 aa~~v~~diIvLchGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~E 250 (268)
T pfam09370 207 AARSVNPDVIVLCHGGPIATPEDAQYVLDRTPGCHGFYGASSME 250 (268)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf 99985998699951788899899999997397776676330366