HHsearch alignment for GI: 254780434 and conserved domain: pfam09370

>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.54  E-value=0.41  Score=27.28  Aligned_cols=219  Identities=15%  Similarity=0.147  Sum_probs=95.2

Q ss_pred             CCEE-ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC--CCCCHHHHHHHHHHHHH
Q ss_conf             9748-53468886779888740367524102001368789988626884255541000024--77777889998764100
Q gi|254780434|r   56 NPLG-MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF--NNAGYHTVFSRLSKIQP  132 (362)
Q Consensus        56 nPig-lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl--~N~G~~~~~~~l~~~~~  132 (362)
T Consensus        15 ~pIigagaGtGls---AK~ae~gGaDlIi~ynsGr-----------fRm~G~gSlagllpygdaN~iv~ema~Evlpvv~   80 (268)
T pfam09370        15 EPIIGAGAGTGLS---AKCEEAGGADLILIYNSGR-----------YRMAGRGSLAGLLPYGNANEIVLEMAREVLPVVK   80 (268)
T ss_pred             CCEEEEECCCCHH---HHHHHHCCCCEEEEECCCH-----------HHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9669973251165---7899857986998615403-----------4435883131201356576999999988875535


Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCC--HHHHH--HHHHHHHHHHHHHHHHC
Q ss_conf             0121000110454246788776555420675526983033365322--110000--23432--11112244455655312
Q gi|254780434|r  133 TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG--LRSLQK--KKNLE--RLLIHVMQTREEEKIKT  206 (362)
Q Consensus       133 ~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g--~~~~~~--~~~l~--~~l~~v~~~~~~~~~~~  206 (362)
T Consensus        81 ~tPViaGv~~tDP~~~-~~~~L~~l~~~G--fs-GV~Nf--PTvglidG~fR~~LEetGmgy~~EVEmIr~A~~------  148 (268)
T pfam09370        81 HTPVLAGVCGTDPFRD-MDRFLDELKEMG--FA-GVQNF--PTVGLIDGEFRQNLEETGMGYDLEVEMIRLAHE------  148 (268)
T ss_pred             CCCEEEECCCCCCCCC-HHHHHHHHHHHC--CC-CEEEC--CCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHH------
T ss_conf             8875876158897452-999999999719--77-44438--822033518887788808867999999999997------


Q ss_pred             CCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHH---HHH
Q ss_conf             68851786505777-748889999987644982999806655532345775446322113564---54246899---999
Q gi|254780434|r  207 GKFVPIFLKISPDL-SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP---LFLKSTIA---LAK  279 (362)
Q Consensus       207 ~~~~Pi~vKLsPd~-~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~---i~~~al~~---i~~  279 (362)
T Consensus       149 -~dl---~T~-~yvf~~e~a~~----Ma~AGaDiIv~H-------------~GlT~gG~iG~~~a~sl~~a~~~~~~i~~  206 (268)
T pfam09370       149 -KGL---LTT-PYVFNVEEARA----MAEAGADIIVAH-------------MGLTTGGTIGADTALSLDDCVELINAIAR  206 (268)
T ss_pred             -CCC---CCC-CEECCHHHHHH----HHHCCCCEEEEC-------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             -798---333-13268999999----997499899976-------------77677767467776789999999999999


Q ss_pred             HHHHCCCCEEEEEEC-CCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             997408974899967-8899999999998399975452787706
Q gi|254780434|r  280 IRQRVGPKIAIIGTG-GISSTKDALDKIMAGANLIQLYSAMIYE  322 (362)
Q Consensus       280 i~~~~~~~i~IIg~G-GI~s~~Da~e~l~aGAs~VQi~Tali~~  322 (362)
T Consensus       207 aa~~v~~diIvLchGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~E  250 (268)
T pfam09370       207 AARSVNPDVIVLCHGGPIATPEDAQYVLDRTPGCHGFYGASSME  250 (268)
T ss_pred             HHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf             99985998699951788899899999997397776676330366