RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2
[Candidatus Liberibacter asiaticus str. psy62]
         (362 letters)



>gnl|CDD|179992 PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Reviewed.
          Length = 344

 Score =  450 bits (1161), Expect = e-127
 Identities = 163/347 (46%), Positives = 228/347 (65%), Gaps = 13/347 (3%)

Query: 4   ILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFF-------PVHSDPRLNTKVAGISLSN 56
           + + LA   L  LDPE AH L+I ALK    +           ++DPRL   V G++  N
Sbjct: 1   MYYPLARPLLFKLDPETAHELTIRALKRASRTPLLSLLRQRLTYTDPRLPVTVMGLTFPN 60

Query: 57  PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116
           P+G+AAG+DKN E    L  LGFGFVE+GTVTP PQ GNP+PR+FRL +D A+IN++GFN
Sbjct: 61  PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 120

Query: 117 NAGYHTVFSRLSKIQPTSPIGINLGANKDS--KDFILDYVSGIRLFFTIASYFTINISSP 174
           N G   +  RL K     P+GIN+G NKD+  +D + DY+  +   +  A YFT+NISSP
Sbjct: 121 NDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSP 180

Query: 175 NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLS 234
           NTPGLR LQ  + L+ LL  + + + E       +VP+ +KI+PDLS+EELDDIA   L 
Sbjct: 181 NTPGLRDLQYGEALDELLAALKEAQAE----LHGYVPLLVKIAPDLSDEELDDIADLALE 236

Query: 235 HKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294
           H ++G+I +NTTLSR G++   N ++ GGLSG PLF +ST  + ++ + +G ++ IIG G
Sbjct: 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVG 296

Query: 295 GISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKE 341
           GI S +DA +KI AGA+L+Q+YS +IYEG  L K I++GL+  L ++
Sbjct: 297 GIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRD 343


>gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase.
          Length = 409

 Score =  336 bits (864), Expect = 4e-93
 Identities = 158/340 (46%), Positives = 206/340 (60%), Gaps = 25/340 (7%)

Query: 16  LDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELL 75
           LDPE AH L+I A   GL+          L  +V G + SNP+G+AAG+DKNAE    LL
Sbjct: 45  LDPETAHSLAISAAARGLVPREKRPDPSVLGVEVWGRTFSNPIGLAAGFDKNAEAVEGLL 104

Query: 76  KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRL------SK 129
            LGFGFVEIG+VTP PQ GNP+PRVFRL ++ AIIN+ GFN+ G   V  RL       K
Sbjct: 105 GLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGKRK 164

Query: 130 IQPTS------------------PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINI 171
           +  TS                   +G+NLG NK S+D   DYV G+R     A Y  IN+
Sbjct: 165 LDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINV 224

Query: 172 SSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVE 231
           SSPNTPGLR LQ +K L+ LL  V+  R+E +       P+ +KI+PDLS+E+L+DIA  
Sbjct: 225 SSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAV 284

Query: 232 VLSHKVEGIIVSNTTLSRKGVQCSDNHEQD-GGLSGSPLFLKSTIALAKIRQRVGPKIAI 290
            L+  ++G+I+SNTT+SR        H  + GGLSG PLF  ST  L ++ +    KI +
Sbjct: 285 ALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPL 344

Query: 291 IGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330
           +G GG+SS +DA  KI AGA+L+QLY+A  YEG +L  RI
Sbjct: 345 VGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRI 384


>gnl|CDD|130108 TIGR01036, pyrD_sub2, dihydroorotate dehydrogenase, subfamily 2.
           The subfamilies 1 and 2 share extensive homology,
           particularly toward the C-terminus. This subfamily has a
           longer N-terminal region.
          Length = 335

 Score =  320 bits (823), Expect = 2e-88
 Identities = 151/332 (45%), Positives = 210/332 (63%), Gaps = 10/332 (3%)

Query: 11  RGLTHLDPEIAHHLSIVALKSGLLSFF------PVHSDPRLNTKVAGISLSNPLGMAAGY 64
           + L  LDPE AH L+   L+ G  + F         +   L   V G+   NPLG+AAG+
Sbjct: 6   KLLFLLDPESAHELTFQFLRLGTGTPFLALLRSLFGASDPLEVTVLGLKFPNPLGLAAGF 65

Query: 65  DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124
           DK+ E    L  +GFGF+EIGTVTP PQ GNPRPR+FRL +D A+IN++GFNN G   + 
Sbjct: 66  DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLV 125

Query: 125 SRLSKIQPTSPIGINLGANKD--SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSL 182
            RL + +   PIGIN+G NKD  S+D   DY + +R    +A Y  +N+SSPNTPGLR L
Sbjct: 126 ERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDL 185

Query: 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIV 242
           Q K  L  LL  V Q  E++ ++    VP+ +KI+PDL+E +L+DIA  ++   ++G+I 
Sbjct: 186 QYKAELRDLLTAVKQ--EQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIA 243

Query: 243 SNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302
           +NTT+SR  VQ   N ++ GGLSG PL  KST  + ++   +  ++ IIG GGISS +DA
Sbjct: 244 TNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDA 303

Query: 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334
           L+KI AGA+L+Q+YS  IY G  L K I++ +
Sbjct: 304 LEKIRAGASLLQIYSGFIYWGPPLVKEIVKEI 335


>gnl|CDD|180909 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed.
          Length = 301

 Score = 93.3 bits (233), Expect = 9e-20
 Identities = 86/343 (25%), Positives = 136/343 (39%), Gaps = 81/343 (23%)

Query: 44  RLNTKVAGISLSNPLGMAAG-----------YDKNAEVPIELLKLGFGFVEIGTVTPHPQ 92
           RL+ ++ G+ L NP+  A+G           YD N          G G +   + T  P+
Sbjct: 1   RLSVELPGLKLKNPVMPASGTFGFGGEYARFYDLN----------GLGAIVTKSTTLEPR 50

Query: 93  AGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGAN---KDSKDF 149
            GNP PR+        ++N +G  N G         ++         + AN      +++
Sbjct: 51  EGNPTPRIAET--PGGMLNAIGLQNPGVDAFIEE--ELPWLEEFDTPIIANVAGSTEEEY 106

Query: 150 I--------LDYVSGIRLFFTIASYFTINISSPN--TPGLRSLQKKKNLERLLIHVMQTR 199
                       V  I L          NIS PN    G+      +    ++       
Sbjct: 107 AEVAEKLSKAPNVDAIEL----------NISCPNVKHGGMAFGTDPELAYEVV------- 149

Query: 200 EEEKIKTGKFVPIFLKISP---DLSEEELDDIAVEVLSHKVEGIIVSNTTL-------SR 249
             + +K    VP+ +K++P   D+ E     IA        +G+ + NT         +R
Sbjct: 150 --KAVKEVVKVPVIVKLTPNVTDIVE-----IAKAAEEAGADGLSLINTLKGMAIDIKTR 202

Query: 250 KGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ-RVGPKIAIIGTGGISSTKDALDKIMA 308
           K +    N    GGLSG  +     IAL  + Q      I IIG GGISS +DA++ IMA
Sbjct: 203 KPIL--ANVT--GGLSGPAIK---PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMA 255

Query: 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
           GA+ +Q+ +A  +       +II+GL  +L+K    + E I G
Sbjct: 256 GASAVQVGTA-NFYDPYAFPKIIEGLEAYLDKYGIKSIEEIVG 297


>gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily
           1) family protein.  This family includes subfamily 1
           dihydroorotate dehydrogenases while excluding the
           closely related subfamily 2 (TIGR01036). This family
           also includes a number of uncharacterized proteins and a
           domain of dihydropyrimidine dehydrogenase. The
           uncharacterized proteins might all be dihydroorotate
           dehydrogenase.
          Length = 300

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 40/322 (12%)

Query: 45  LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRL 103
           L  ++ GI   NPL +A+G      E    + + G G V   ++   P+ G   P +   
Sbjct: 1   LEVELFGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVET 60

Query: 104 TKDRAIINKLGFNNAGYHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFF 161
                ++N +G  N G       L  +  +  +P+  ++      ++F  +    +    
Sbjct: 61  PC--GMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASV-YGSSVEEFA-EVAEKLEKAP 116

Query: 162 TIASYFTINISSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD 219
                + +N+S P+    G+   Q  +    ++         + +K    VP+F K+SP+
Sbjct: 117 PYVDAYELNLSCPHVKGGGIAIGQDPELSADVV---------KAVKDKTDVPVFAKLSPN 167

Query: 220 LSEEELDDIAVEVLSHKVEGIIVSNTTL-------SRKGVQCSDNHEQDGGLSG---SPL 269
           +++  + +IA        +G+ + NT         + K +  +    + GGLSG    P+
Sbjct: 168 VTD--ITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILAN----KTGGLSGPAIKPI 221

Query: 270 FLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKR 329
            L+    + K+       I IIG GGI+S +DAL+ +MAGA+ +Q+ +A+ Y G    K+
Sbjct: 222 ALRMVYDVYKMVD-----IPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG-FAFKK 275

Query: 330 IIQGLSDFLNKENEVNFENIRG 351
           II+GL  FL  E   + E + G
Sbjct: 276 IIEGLIAFLKAEGFTSIEELIG 297


>gnl|CDD|179435 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.
          Length = 310

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 6/93 (6%)

Query: 262 GGLSGSPLFLKSTIALAKIR---QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318
           GG+ G   ++K T ALA +R   QR+ P I IIGTGG+ + +DA + I+ GA+++Q+ +A
Sbjct: 216 GGIGGD--YIKPT-ALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTA 272

Query: 319 MIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
           +  EG ++ +R+ + L   + ++   + E+ RG
Sbjct: 273 LHKEGPAVFERLTKELKAIMAEKGYQSLEDFRG 305



 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 19/144 (13%)

Query: 44  RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFR 102
             +T++AG    N L  AAG Y    E   E+     G     + T  P+ GNP PR   
Sbjct: 1   STSTQIAGFKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYAD 60

Query: 103 LTKDRAIINKLGFNNAG---YHTVFSRLSKIQPTSPIGINL-GANKDSKDFILDYVSGIR 158
                  IN +G  N G   Y      L K  P  P  +++ G + +    IL  +    
Sbjct: 61  TP--LGSINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQ--- 115

Query: 159 LFFTIASYFT----INISSPNTPG 178
                AS F     +N+S PN PG
Sbjct: 116 -----ASDFNGLVELNLSCPNVPG 134


>gnl|CDD|178112 PLN02495, PLN02495, oxidoreductase, acting on the CH-CH group of
           donors.
          Length = 385

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)

Query: 210 VPIFLKISPDLSEEELDDI---AVEVLSHKVEGIIVSNTTLSRKGVQ--------CSDNH 258
           VP++ K++P+++     DI   A   L    EG+   NT +S  G+         C + +
Sbjct: 183 VPVWAKMTPNIT-----DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGY 237

Query: 259 EQDGGLSGS---PLFLKSTIALAKIRQRVGPK-IAIIGTGGISSTKDALDKIMAGANLIQ 314
              GG S     P+ L   +A+AK+ +   P+  ++ G GG+ +  DA + I+ GA+ +Q
Sbjct: 238 STPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQ 297

Query: 315 LYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEY 356
           + + ++  G  L K +   L DF+ K N  + E+ RG+   Y
Sbjct: 298 VCTGVMMHGYPLVKNLCAELQDFMKKHNFSSIEDFRGASLPY 339


>gnl|CDD|181033 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
          Length = 334

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 46/164 (28%)

Query: 210 VPIFLKISPDLSE-----EELD----------------DIAVEVLSHKVEGIIVSNTTLS 248
           +P+ +K+SP  S      + LD                DI +E L       +V    LS
Sbjct: 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLE------VVPGLVLS 219

Query: 249 RKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308
                       +  L   PL     IA+     RVG  +A   T G+   +D +  ++A
Sbjct: 220 TP---------AELRL---PL---RWIAIL--SGRVGADLAA--TTGVHDAEDVIKMLLA 260

Query: 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352
           GA+++ + SA++  G      I++GL D++ +    + +  RGS
Sbjct: 261 GADVVMIASALLRHGPDYIGTILRGLEDWMERHGYESLQQFRGS 304


>gnl|CDD|181383 PRK08318, PRK08318, dihydropyrimidine dehydrogenase subunit B;
           Validated.
          Length = 420

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 13/97 (13%)

Query: 262 GGLSGS---PLFLKSTIALAKIRQ-RVGPKIA---IIGTGGISSTKDALDKIMAGANLIQ 314
           GG  G    P      IAL  + +    P+     I G GGI + +DA + I+ GA  +Q
Sbjct: 227 GGYCGPAVKP------IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280

Query: 315 LYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRG 351
           + +A +  G  + + +I GLS +++++   + E++ G
Sbjct: 281 VCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVG 317


>gnl|CDD|179050 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.
          Length = 221

 Score = 37.1 bits (87), Expect = 0.008
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)

Query: 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSD 336
           +R+ VGP++ +  +GGI + +DAL  I AGA  +         G S    I++GL  
Sbjct: 172 MRETVGPRVGVKASGGIRTLEDALAMIEAGATRL---------GTSAGVAILKGLEK 219


>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
          Length = 381

 Score = 33.5 bits (77), Expect = 0.10
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 238 EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297
           +GI+VSN      G Q       DG LS       S  AL  I   V   I I+   GI 
Sbjct: 268 DGIVVSN----HGGRQL------DGVLS-------SARALPAIADAVKGDITILADSGIR 310

Query: 298 STKDALDKIMAGANLIQLYSAMIY 321
           +  D +  I  GA+ + L  A +Y
Sbjct: 311 NGLDVVRMIALGADTVLLGRAFVY 334


>gnl|CDD|161723 TIGR00126, deoC, deoxyribose-phosphate aldolase.
           Deoxyribose-phosphate aldolase is involved in the
           catabolism of nucleotides and deoxyriibonucleotides. The
           catalytic process is as follows: 2-deoxy-D-ribose
           5-phosphate = D-glyceraldehyde 3-phosphate +
           acetaldehyde. It is found in both gram-postive and
           gram-negative bacteria.
          Length = 211

 Score = 32.8 bits (75), Expect = 0.15
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLI 313
           +R  VG  I +  +GG+ + +DA+  I AGA+ I
Sbjct: 168 MRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI 201


>gnl|CDD|179108 PRK00748, PRK00748,
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase; Validated.
          Length = 233

 Score = 30.0 bits (69), Expect = 1.0
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 28/107 (26%)

Query: 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKI 280
           S    +D+A       V+ II   T +SR           DG LSG      +  A  ++
Sbjct: 144 SGVTAEDLAKRFEDAGVKAIIY--TDISR-----------DGTLSGP-----NVEATREL 185

Query: 281 RQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI----YEG 323
              V   I +I +GG+SS    LD I A   L  +   ++    YEG
Sbjct: 186 AAAVP--IPVIASGGVSS----LDDIKALKGLGAVEGVIVGRALYEG 226


>gnl|CDD|161817 TIGR00321, dhys, deoxyhypusine synthase.  This family of apparent
           orthologs has an unusual UPGMA difference tree, in which
           the members from the archaea M. jannaschii and P.
           horikoshii cluster with the known eukaryotic
           deoxyhypusine synthases. Separated by a fairly deep
           branch, although still strongly related, is a small
           cluster of proteins from Methanobacterium
           thermoautotrophicum and Archeoglobus fulgidus, the
           latter of which has two.
          Length = 301

 Score = 28.5 bits (64), Expect = 2.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 17/61 (27%)

Query: 223 EELDDIAVEVLSHKVEGIIV----------SNTTLSRKG----VQCSDNHEQDGGLSGSP 268
            +L+DI     + +  G+I+           N  L R+G    VQ + +  QDG LSG+P
Sbjct: 209 RKLNDIVF---NSERTGVIILGGGLPKHFILNACLLREGADYAVQITTDQPQDGSLSGAP 265

Query: 269 L 269
           L
Sbjct: 266 L 266


>gnl|CDD|180081 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
           Provisional.
          Length = 352

 Score = 28.6 bits (65), Expect = 2.9
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLP 327
            +L + R  + P + II +GGI +  D    +  GA+ +         G++ P
Sbjct: 250 QSLLEARS-LLPDLPIIASGGIRNGLDIAKALALGADAV---------GMAGP 292


>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
          Length = 463

 Score = 27.4 bits (61), Expect = 5.4
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 160 FFT-IASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP 218
           FF  +    ++ I  P T     +Q +KN+ R+L  ++Q R          +   ++   
Sbjct: 196 FFKLVLGTLSLPIDLPGTNYRSGVQARKNIVRMLRQLIQERRASGETHTDMLGYLMRKEG 255

Query: 219 D---LSEEELDDIAVEVLSHKVEGIIVSNTTL 247
           +   L++EE+ D  + +L    E   VS T++
Sbjct: 256 NRYKLTDEEIIDQIITILYSGYE--TVSTTSM 285


>gnl|CDD|183866 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
          Length = 244

 Score = 27.3 bits (61), Expect = 5.5
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 268 PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY------ 321
           P+ ++  I   ++R  VG K  ++G G + S +DA D + AGA+ + + +A I       
Sbjct: 169 PVSVERNIK--RVRNLVGNKYLVVGFG-LDSPEDARDALSAGADGVVVGTAFIEELEKNG 225

Query: 322 --EGISLPKRIIQGLSD 336
               ++L K+I   L +
Sbjct: 226 VESALNLLKKIRGALDE 242


>gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
          Length = 765

 Score = 27.2 bits (61), Expect = 6.0
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 279 KIRQRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQL 315
           +IR   G  IA I  G IS        I AG A+L  L
Sbjct: 681 RIRNEAG--IATIAVGAISEADHVNSIIAAGRADLCAL 716


>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
          Length = 393

 Score = 27.2 bits (60), Expect = 6.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 276 ALAKIR--QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQL 315
            LAKI      G   AI+G G +S+T+  LDK  AG +L +L
Sbjct: 272 VLAKIAAYANAGVDPAIMGIGPVSATRRCLDK--AGWSLAEL 311


>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6. 
          Length = 200

 Score = 27.2 bits (61), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 216 ISPDLSEEELDDIA----VEVLSHKVEGIIV--SNTTLSRKG 251
            SPDLS+E  + I+    VEV    + G I   S   ++ KG
Sbjct: 113 ASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKG 154


>gnl|CDD|162224 TIGR01143, murF,
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase.  This family consists of the strictly bacterial
           MurF gene of peptidoglycan biosynthesis. This enzyme is
           almost always
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
           few species, MurE adds lysine rather than
           diaminopimelate. This enzyme acts on the product from
           MurE activity, and so is also subfamily rather than
           equivalog. Staphylococcus aureus is an example of
           species in this MurF protein would differ.
          Length = 417

 Score = 27.2 bits (61), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 275 IALAKIRQRVGPKIAIIGTGGISSTKDAL 303
           +A AK  +  G  I I G+ G ++TK+ L
Sbjct: 64  LASAKRAKFSGKVIGITGSSGKTTTKEML 92


>gnl|CDD|162403 TIGR01531, glyc_debranch, glycogen debranching enzymye.  glycogen
           debranching enzyme possesses two different catalytic
           activities; oligo-1,4-->1,4-glucantransferase (EC
           2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
           directed mutagenesis studies in S. cerevisiae indicate
           that the transferase and glucosidase activities are
           independent and located in different regions of the
           polypeptide chain. Proteins in this model belong to the
           larger alpha-amylase family. The model covers eukaryotic
           proteins with a seed composed of human, nematode and
           yeast sequences. Yeast seed sequence is well
           characterized. The model is quite rigorous; either query
           sequence yields large bit score or it fails to hit the
           model altogether. There doesn't appear to be any middle
           ground.
          Length = 1464

 Score = 27.1 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 118 AGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYF 167
            G   + S L KI+P + +G  L  N     ++LDY+S  RL     SY 
Sbjct: 884 CGLQGLVSVLRKIRPKNDLGHPLCNNLRDGHWMLDYISS-RL----NSYS 928


>gnl|CDD|178686 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
           Provisional.
          Length = 452

 Score = 27.0 bits (60), Expect = 7.3
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 163 IASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGK 208
           I    ++ I  P T   RSLQ KK + +L+  +++ +        +
Sbjct: 181 IKGLMSLPIKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEE 226


>gnl|CDD|177992 PLN02363, PLN02363, phosphoribosylanthranilate isomerase.
          Length = 256

 Score = 27.1 bits (60), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 295 GISSTKDALDKIMAGANLI 313
           GI+S +DA   + AGA+ I
Sbjct: 53  GITSARDAAMAVEAGADFI 71


>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
          Length = 368

 Score = 26.9 bits (60), Expect = 7.6
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 233 LSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP-------LFLKSTIALAKIRQRVG 285
           LS  V  +  ++T      +  SD    DG    +P       L  + T   A+I    G
Sbjct: 152 LSAMVAALADADTL-----IILSD---IDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAG 203

Query: 286 PKIAIIGTGGISSTKDALDKIMA 308
              + +GTGG+ +   A    M+
Sbjct: 204 GAGSNVGTGGMRTKIQAAKIAMS 226


>gnl|CDD|162088 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing),
           C-terminal domain or B subunit.  This protein of purine
           de novo biosynthesis is well-conserved. However, it
           appears to split into two separate polypeptide chains in
           most of the Archaea. This C-terminal region would be the
           larger subunit.
          Length = 311

 Score = 26.9 bits (60), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 276 ALAKIRQRVGPKIAIIG-TGGISST 299
           A+ +IR++VG    II  +GG+ S+
Sbjct: 6   AVEEIREQVGDAKVIIALSGGVDSS 30


>gnl|CDD|184343 PRK13813, PRK13813, orotidine 5'-phosphate decarboxylase;
           Provisional.
          Length = 215

 Score = 26.9 bits (60), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLI 313
           +  IR R+G ++ II  G  +    A D I AGA+ +
Sbjct: 153 VRYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYV 189


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,982,473
Number of extensions: 399115
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 935
Number of HSP's successfully gapped: 45
Length of query: 362
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 267
Effective length of database: 3,941,713
Effective search space: 1052437371
Effective search space used: 1052437371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)