BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2
[Candidatus Liberibacter asiaticus str. psy62]
(362 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 362
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM
Sbjct: 1 MLSILHKLALRGLTHLDPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGM 60
Query: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY
Sbjct: 61 AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY 120
Query: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR
Sbjct: 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180
Query: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI
Sbjct: 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
Query: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK
Sbjct: 241 IVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300
Query: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK
Sbjct: 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKK 360
Query: 361 EV 362
EV
Sbjct: 361 EV 362
>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 307
Score = 28.9 bits (63), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 339 NKENEVNFENIRGSYTEYWAKK 360
NK+N+++F+NI + T+YWA++
Sbjct: 6 NKKNDLSFQNIILTLTQYWAQQ 27
>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317
L + +++ ++ +R G +AI+ GGI + D I AG+ + + S
Sbjct: 322 LSAIMSVVEVAERAG--VAIVADGGIRFSGDIAKAIAAGSACVMIGS 366
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 328 KRIIQGLSDFLNKENEVNFENIRGSYTEY 356
KRI++ F+N + E N E +R Y E+
Sbjct: 494 KRIVENEESFINNDQEYNDETVR--YVEH 520
>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 345
Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
+LL H +E + + K +P +ISP EEL+DI E S + GI
Sbjct: 42 KLLRHFTHAELKEIVASAKLLP---EISP----EELEDIIDEFESQFIAGI 85
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 386
Score = 23.1 bits (48), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 51 GISLSNPLGMAAGYDKNAEVPI 72
GI +S PLG+ +N+ +P+
Sbjct: 187 GIIISMPLGILLALGRNSNIPV 208
>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 23.1 bits (48), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 120 YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF 161
+H F +L +I+P++ GI A K K ++VS + F+
Sbjct: 625 HHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVSTVENFY 666
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,415
Number of Sequences: 1233
Number of extensions: 10154
Number of successful extensions: 30
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 12
length of query: 362
length of database: 328,796
effective HSP length: 75
effective length of query: 287
effective length of database: 236,321
effective search space: 67824127
effective search space used: 67824127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)