HHsearch alignment for GI: 254780435 and conserved domain: TIGR03423
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=98.71 E-value=1.4e-05 Score=53.49 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCEEEEEECCCCEEEEEEC---------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8568999978962977643---------------------------------9983075269899999999851357777
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY---------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn---------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~ 74 (336)
T Consensus 248 ~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~i 324 (592)
T TIGR03423 248 RGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGVI 324 (592)
T ss_pred CEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCCC
T ss_conf 3569999668884899961788770230378798899987439665421201122446872689999999997---5999
Q ss_pred CCCCEEEECHHHHHCCCCCCC--CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 876603517877200366443--4510-123467776767774235899999764011178999999999987098353
Q gi|254780435|r 75 MLTTPITISKNASEYPPSNST--FKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 (336)
Q Consensus 75 ~ld~~v~vs~~~~~~~~s~~~--l~~g-~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T 150 (336)
T Consensus 325 ~~~~~~~~~g-~~~~~~~~i~d~~~~~~g~lt~~~~----l~~SsNvg~~~ia~~lg------~~~~~~~~~~fGfg~~ 392 (592)
T TIGR03423 325 TPDTRINCPG-YFQLGGRRFRCWKRGGHGRVDLRKA----IEESCDVYFYQLALRLG------IDKIAEYAKKFGFGQK 392 (592)
T ss_pred CCCCEEECCC-CCCCCCCCCCCCCCCCCCEECHHHH----HHEEECHHHHHHHHHCC------HHHHHHHHHHCCCCCC
T ss_conf 9985896078-3025985230478888630145544----10383399978988618------7889999984678877