HHsearch alignment for GI: 254780435 and conserved domain: pfam00905
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=98.71 E-value=3e-06 Score=57.53 Aligned_cols=136 Identities=18% Similarity=0.099 Sum_probs=85.4
Q ss_pred EEEEEECCCCEEEEEECC-----------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC
Q ss_conf 689999789629776439-----------------983075269899999999851357777876603517877200366
Q gi|254780435|r 30 YYTLLDTNTGHVIAENYP-----------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn~-----------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s 92 (336)
T Consensus 2 a~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe---~g~~~~~~~~~~~~~~~-~~~~ 77 (296)
T pfam00905 2 SAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALD---NGILKPEETFDDWPGLP-VGGY 77 (296)
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCC-CCCC
T ss_conf 5999989999299998689889787664222187668658848999999999998---79988761114776434-7993
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-EEECC---CCC-CC----
Q ss_conf 44---34510123467776767774235899999764011178999999999987098353-44123---576-46----
Q gi|254780435|r 93 NS---TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT-HFMNA---HGV-VQ---- 160 (336)
Q Consensus 93 ~~---~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T-~f~n~---~Gl-~~---- 160 (336)
T Consensus 78 ~~~n~~~~~~G~~tl~~----al~~S~N~~~~~l~~~lg------~~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~ 147 (296)
T pfam00905 78 TIKDWNQDGSGTITLRE----ALEYSSNWYFQQLALKLG------KDKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRG 147 (296)
T ss_pred CEECCCCCCCCCCCHHH----HHHHCCCHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22468999887554999----998509677899999708------47899999971888776888864435667775543
Q ss_pred ---------CCCCCCHHHHHHHHHHHHH
Q ss_conf ---------2222569999999898763
Q gi|254780435|r 161 ---------HGHYTTARDMAILSWRIKT 179 (336)
Q Consensus 161 ---------~~~~tTa~Dla~l~~~~~~ 179 (336)
T Consensus 148 ~~~~~~~G~G~~~vTplq~a~aya~iAN 175 (296)
T pfam00905 148 DGATTAWGQGSLTITPLQQAQAYATIAN 175 (296)
T ss_pred CHHHEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 1010101067662269999999999871