HHsearch results for GI: 254780435 and protein with PDBid: 1w79_A
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A*
Probab=99.52 E-value=2.8e-12 Score=92.94 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 46777676777423589999976401------11789999999999870983--53441235764622225699999998
Q gi|254780435|r 103 TLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMAILS 174 (336)
Q Consensus 103 tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336)
++.++++.|+-.|.|-.|..|...++ |+.+.-...|.+..+++|+. +.++.|-+|| ...|..||++|..+.
T Consensus 286 pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~~~~~~~~~l~~~gi~~~~~~l~DGSGL-Sr~nriSp~~l~~lL 364 (489)
T 1w79_A 286 ELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGL-SRGNLVTADTVVDLL 364 (489)
T ss_dssp EHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTCCCTTCBCSCSSSC-STTCBBCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCHHHHHHHH
T ss_conf 8999999998636659999999999997448997789999999999865898567477058878-866665999999999
Q ss_pred HHHHHHHHHHHCCCCEEECCCCC-------EEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEEC
Q ss_conf 98763123311012302000174-------478601456566-8971153321241120002345642-88689999837
Q gi|254780435|r 175 WRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILG 245 (336)
Q Consensus 175 ~~~~~~~p~~~~~~~~~~~~~~~-------~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg 245 (336)
.++. +.|.+..+... +...| .|+. |++... -.|..-.|||+... -.+|++.... +|+ ++.+++-
T Consensus 365 ~~~~-~~~~~~~~~~s--LPiaG~~~~~vdGTL~--~R~~~~~~~g~v~aKTGTL~~-V~sLaGyv~~~~G~-l~Fsi~~ 437 (489)
T 1w79_A 365 GQAG-SAPWAQTWSAS--LPVAGESDPFVGGTLA--NRMRGTAAEGVVEAKTGTMSG-VSALSGYVPGPEGE-LAFSIVN 437 (489)
T ss_dssp HHHH-TSTTHHHHHHH--SCBTTCSSHHHHGGGT--TSSTTSTTTTTCEEECCEETT-EEEEEEEECCTTCC-EEEEEEE
T ss_pred HHHH-HCCCHHHHHHH--CCCCCCCCCCCCCCHH--HHCCCCCCCCEEEEEEEEECC-CEEEEEEEECCCCC-EEEEEEE
T ss_conf 9988-59317899973--8857887777787556--642478767849999850069-47838999969998-9999997