HHsearch results for GI: 254780435 and protein with PDBid: 1yqs_A
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=98.93 E-value=6.1e-08 Score=66.54 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=75.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH--------------------
Q ss_conf 399830752698999999998513577778766035178772003664434510123467--------------------
Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD-------------------- 105 (336)
Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~-------------------- 105 (336)
+.|.++++||+||.+|+.+++..+++|+++||++|. +..... ...+.+|++
T Consensus 53 t~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~--~ylp~~-------~~~~~iTi~~LL~HtSGl~~~~~~~~~~~ 123 (349)
T 1yqs_A 53 TTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVN--TYLPGL-------LPDDRITVRQVMSHRSGLYDYTNDMFAQT 123 (349)
T ss_dssp CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHSTTC-------SSCTTCBHHHHHTTCSCCCCTHHHHTSSH
T ss_pred CCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCC-------CCCCCCCHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 999979630479999999999999879999888210--028876-------88886659998216478987655310220
Q ss_pred ---------------HHHHHHHHH----------H-HHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECC
Q ss_conf ---------------776767774----------2-358999997---64011178999999999-98709835344123
Q gi|254780435|r 106 ---------------NALKLLIVK----------S-ANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNA 155 (336)
Q Consensus 106 ---------------dll~~~li~----------S-~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~ 155 (336)
|++....-. + +|-....|+ |.+.| +.|-+.|.++ .+-|||++|.|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtG--~~~~~~~~e~i~~PLGm~~t~~~~~ 201 (349)
T 1yqs_A 124 VPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG--HSVATEYQNRIFTPLNLTDTFYVHP 201 (349)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTTTTCTTCBCCTT
T ss_pred CCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 44300002344788999999875044579995677643352310221321049--9789999998664329987788896
Q ss_pred C---------CC----------------------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5---------76----------------------4622225699999998987631
Q gi|254780435|r 156 H---------GV----------------------VQHGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 156 ~---------Gl----------------------~~~~~~tTa~Dla~l~~~~~~~ 180 (336)
. |. ...+-++|++||++..+.++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dl~~~~~~l~~g 257 (349)
T 1yqs_A 202 DTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSG 257 (349)
T ss_dssp CCCCCSSBCCCEECCSSTTCCCEECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 02123212124223556787231353346543466764106899999999998669