HHsearch results for GI: 254780435 and protein with PDBid: 2iwb_A

>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=99.19  E-value=1.3e-09  Score=76.71  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=115.3

Q ss_pred             CEEEEEECCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHH
Q ss_conf             5689999789629776439---9830752698999999998513577778766035178772003664434-51012346
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENYP---DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTL  104 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn~---~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv  104 (336)
                      -+++++|..||+++. -|.   .++++|+|+-|++|++.+||   +|.++.++.+...      ++..... .....+++
T Consensus        24 G~~v~~d~~tg~~~~-~n~~~~~~~y~PGStfK~~t~~aaLe---~g~~~~~~~~~~~------~~~~~~~~~~~g~~~l   93 (246)
T 2iwb_A           24 GSFVLYNEREQAYSI-YNEPESKQRYSPNSTYKIYLALMAFD---QNLLSLNHTEQQW------DKHQYPFKEWNQDQNL   93 (246)
T ss_dssp             EEEEEEETTTTEEEE-ESHHHHTBCBCCGGGGHHHHHHHHHH---TTSSBTTBCCBCC------CCCCCSSGGGSSCBCH
T ss_pred             EEEEEEECCCCCEEE-ECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCC------CCCCCCCCCCCCCCCH
T ss_conf             469999789996760-58889668779963699999999998---4997885434169------9866178988997077


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf             7776767774235899999764011178999999999987098353441235-7646222256999999989876312--
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH-GVVQHGHYTTARDMAILSWRIKTDF--  181 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~-Gl~~~~~~tTa~Dla~l~~~~~~~~--  181 (336)
                      ++.    |..|+|.+..-|++.+|      .+.|.+.++.+|+.+.....+. ++...+-..|+.+|+.+...+...-  
T Consensus        94 ~~A----l~~S~N~~~~~la~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~iTPlqma~~~~~ian~g~~  163 (246)
T 2iwb_A           94 NSS----MKYSVNWYYENLNKHLR------QDEVKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMH  163 (246)
T ss_dssp             HHH----HHTTCHHHHHHHHTTSC------HHHHHHHHHHHTCTTCCCCSCSSTTSSSSCCBCHHHHHHHHHHHHTTCSS
T ss_pred             HHH----HHCCCHHHHHHHHHHCC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             884----22456299999998728------60789999982899998898764222687525699999999999838967


Q ss_pred             --HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH--EEEEEEEECCEEEEEEEE
Q ss_conf             --331101230200017447860145656689711533212411200--023456428868999983
Q gi|254780435|r  182 --PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF--NIVASAIQGDQSLIAVIL  244 (336)
Q Consensus       182 --p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~--~lv~~a~~~g~~li~Vvl  244 (336)
                        |+..+....      .......    ..+...-+.|||.+.....  -||+.+..++.+++++|+
T Consensus       164 ~~p~~~~~~~~------~~~~~~~----~~~~~~~ktgTg~~~~~~~~aWFvGf~p~~~p~~~~~v~  220 (246)
T 2iwb_A          164 FDNKAIEKVEN------SMTLKQK----DTYKYVGKTGTGIVNHKEANGWFVGYVETKDNTYYFATH  220 (246)
T ss_dssp             SCHHHHHHHHH------HTEEEEC----SSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE
T ss_pred             CCCHHHHHHHH------HHHHHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf             88325567777------7777654----234432110104468988788999999889995999999