HHsearch results for GI: 254780435 and protein with PDBid: 3equ_A
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=98.50 E-value=2.6e-05 Score=50.48 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=120.4
Q ss_pred CCCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECH
Q ss_conf 4785689999789629776439---------------------9830752698999999998513577778766035178
Q gi|254780435|r 26 NKLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 (336)
Q Consensus 26 ~~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~ 84 (336)
...-++++||..||+||.--.. ...++|+|+.|.+|++.+++ .|.++.+..+....
T Consensus 221 ~~~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~---~g~~~~~~~~~~~~ 297 (542)
T 3equ_A 221 AKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALD---AGKTDLNERLNTQP 297 (542)
T ss_dssp CSEEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHH---HTSSCTTCEEECCC
T ss_pred CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH---CCCEECCEECCCCC
T ss_conf 556348985067783676426776662212356631124344407677842666899999985---69630330114577
Q ss_pred HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CEEECC---CCCC
Q ss_conf 772003664-43451012346777676777423589999976401117899999999998709835-344123---5764
Q gi|254780435|r 85 NASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNA---HGVV 159 (336)
Q Consensus 85 ~~~~~~~s~-~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~-T~f~n~---~Gl~ 159 (336)
.. .++.. ..-.....+++++. +..|.|....-|++.+| .+.|-+.++++|+.. |-+.=| .|..
T Consensus 298 ~~--~~~~~~~~~~~~G~~~l~~a----l~~S~N~~~~~l~~~~g------~~~~~~~~~~fG~g~~t~idlp~e~~~~~ 365 (542)
T 3equ_A 298 YK--IGPSPVRDTHVYPSLDVRGI----MQKSSNVGTSKLSARFG------AEEMYDFYHELGIGVRMHSGFPGETAGLL 365 (542)
T ss_dssp EE--ETTEEECCSSCCSEEEHHHH----HHHTCHHHHHHHHTTSC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC
T ss_pred CC--CCCCCCCCCCCCCCCCHHHH----HHCCCEEHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 53--44321123367784248998----54174515457888729------58899999974998656899875434543
Q ss_pred ----------------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEE----------------EE---C
Q ss_conf ----------------62222569999999898763123311012302000-174478----------------60---1
Q gi|254780435|r 160 ----------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKY----------------PN---T 203 (336)
Q Consensus 160 ----------------~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~----------------~N---~ 203 (336)
..+...|+-.|+.....+..+ ..+..-.-.+... ..+... .+ +
T Consensus 366 ~~~~~~~~~~~~~~~~Gqg~~~Tplq~a~~~a~iaN~-G~~~~p~~v~~i~~~~~~~~~~~~~a~~i~~~l~~Vv~~~GT 444 (542)
T 3equ_A 366 RNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHD-GVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGT 444 (542)
T ss_dssp CCGGGCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT-TEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSS
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEEEEC-CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEECCCCC
T ss_conf 4433467311223204776568889985552325208-789987654420278775324477899999899863727981
Q ss_pred CCCCCCCCC-EEEEEEECCHHH--------H--HEEEEEEEEC-CEEEEEEEECCCCH------HHHHHHHHHHHHHHHH
Q ss_conf 456566897-115332124112--------0--0023456428-86899998378986------6789999999999985
Q gi|254780435|r 204 NWAVGTFLG-ADGMKTGFTCAS--------G--FNIVASAIQG-DQSLIAVILGALDR------NTRNKVSASLLSMGFY 265 (336)
Q Consensus 204 N~ll~~~~g-v~G~KTG~t~~A--------G--~~lv~~a~~~-g~~li~Vvlg~~~~------~~r~~~~~~Ll~~~f~ 265 (336)
-... ..+| -.++|||+.... . .-|++.+-.+ .+-.++|++..+.. ..-..-.+++++..++
T Consensus 445 g~~a-~~~g~~vaGKTGTAq~~~~g~~~~~~~~awFvGy~P~~~p~~av~V~v~~~~~~g~~G~~~AaPi~~~i~~~~l~ 523 (542)
T 3equ_A 445 GTAG-AVDGFDVGAKTGTARKFVNGRYADNKHVATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLN 523 (542)
T ss_dssp CGGG-CCTTSCCEEEEEEC-----------CCEEEEEEEESSSSCCEEEEEEEESCCSSCCCHHHHTHHHHHHHHHHHHH
T ss_pred EEEC-CCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8720-579954899920001567885578984699999988799859999999428989875678999999999999999
Q ss_pred HC
Q ss_conf 14
Q gi|254780435|r 266 NK 267 (336)
Q Consensus 266 ~f 267 (336)
-+
T Consensus 524 ~~ 525 (542)
T 3equ_A 524 IL 525 (542)
T ss_dssp HT
T ss_pred HC
T ss_conf 76