HHsearch results for GI: 254780435 and protein with PDBid: 3lo7_A
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=98.54 E-value=7.7e-06 Score=53.74 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=86.0
Q ss_pred CCEEEEEECCCCEEEEEEC------------------------------------CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8568999978962977643------------------------------------9983075269899999999851357
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY------------------------------------PDHPWNPASLTKLMTAYVVFSFLKE 71 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn------------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~ 71 (336)
.-++++||..||+||.=-+ ....+||+|+-|++|+..+|+ +
T Consensus 151 ~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~~pl~Nra~~~~y~PGStfK~~t~aaaLe---~ 227 (483)
T 3lo7_A 151 KGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALA---A 227 (483)
T ss_dssp CEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTTCTTSCTTTSCCBCCGGGGHHHHHHHHHH---T
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH---C
T ss_conf 2799999789992999960688882101367741127999873146433101404412537988489999999998---0
Q ss_pred CCCCCCCEEEECHHHHHCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 77787660351787720036644--------3451012346777676777423589999976401117899999999998
Q gi|254780435|r 72 KKAMLTTPITISKNASEYPPSNS--------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 (336)
Q Consensus 72 g~~~ld~~v~vs~~~~~~~~s~~--------~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~ 143 (336)
|....++... .. ....+++.. .......+++++ .+..|.|-+..-++..+| .+.+.+.++
T Consensus 228 G~~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~----Al~~S~N~~f~~l~~~~G------~~~~~~~~~ 295 (483)
T 3lo7_A 228 GATETEQLTA-AP-TIPLPGSTAQLENYGGAPCGDEPTVSLRE----AFVKSCNTAFVQLGIRTG------ADALRSMAR 295 (483)
T ss_dssp TCCTTCEEEC-CS-BCCC-------BCC---CCSSSSEEEHHH----HHHTTCHHHHHHHHHHHC------HHHHHHHHH
T ss_pred CCCCEEEEEC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHCCHHHHHHHHHHC------CHHHHHHHH
T ss_conf 9852000103-68-61136864211100254468987343999----998604258889999839------403433577
Q ss_pred HCCCCCCEEECCCCCCC-------------------CCCCCCHHHHHHHHHHHHHH
Q ss_conf 70983534412357646-------------------22225699999998987631
Q gi|254780435|r 144 NLGLSATHFMNAHGVVQ-------------------HGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 144 ~lG~~~T~f~n~~Gl~~-------------------~~~~tTa~Dla~l~~~~~~~ 180 (336)
.+|+.......+-++.. .+...|+-.||.+...+..+
T Consensus 296 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANg 351 (483)
T 3lo7_A 296 AFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANG 351 (483)
T ss_dssp HTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 60899855677644443445653334543220110455446778877766654259