Query         gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 336
No_of_seqs    171 out of 2246
Neff          6.8 
Searched_HMMs 23785
Date          Mon May 30 11:40:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780435.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ita_A D-alanyl-D-alanine carb 100.0       0       0  566.6  28.1  316   19-334     4-330 (352)
  2 3hun_A Penicillin-binding prot 100.0       0       0  570.6  24.2  254   24-277    66-347 (453)
  3 1z6f_A Penicillin-binding prot 100.0       0       0  565.1  26.5  316   19-334     8-334 (363)
  4 3a3j_A PBP5; penicillin bindin 100.0       0       0  556.0  26.7  312   21-334     2-324 (344)
  5 1xp4_A D-alanyl-D-alanine carb 100.0       0       0  552.0  27.2  315   19-334     5-351 (379)
  6 3mfd_A D-alanyl-D-alanine carb 100.0       0       0  543.4  24.5  250   21-279     2-255 (334)
  7 1tvf_A PBP4, penicillin bindin 100.0       0       0  535.1  25.6  252   26-277    32-311 (369)
  8 1es5_A DD-transpeptidase; peni 100.0       0       0  504.5  22.9  240   22-265     2-261 (262)
  9 2bcf_A Probable D-alanyl-D-ala 100.0       0       0  499.8  22.7  251   19-276    10-269 (276)
 10 1w7f_A Beta-lactamase; hydrola 100.0 2.7E-39 1.1E-43  257.6  16.9  209   30-247    62-279 (307)
 11 2cc1_A Beta-lactamase, penicil 100.0 2.5E-39 1.1E-43  257.7  12.3  227   30-263    19-253 (262)
 12 2qpn_A Beta-lactamase GES-1; A 100.0 1.5E-38 6.2E-43  253.1  14.2  212   30-248    40-260 (287)
 13 3dw0_A Class A carbapenemase K 100.0   1E-37 4.2E-42  248.0  16.7  229   30-265    45-289 (294)
 14 1m40_A TEM-1, beta-lactamase T 100.0 5.2E-37 2.2E-41  243.7  18.9  211   28-245    17-238 (263)
 15 3m6b_A Beta-lactamase, penicil 100.0 2.2E-38 9.2E-43  252.1  11.7  214   28-247    15-239 (265)
 16 2j9o_A TLL2115 protein; penici 100.0 2.7E-36 1.1E-40  239.3  18.2  232   30-268    37-272 (298)
 17 1n9b_A Penicillinase, beta-lac 100.0 1.8E-36 7.6E-41  240.4  14.3  236   26-268    15-264 (265)
 18 2wk0_A Beta-lactamase; hydrola 100.0 1.4E-35 5.7E-40  235.0  17.1  228   30-266    20-262 (265)
 19 2p74_A Beta-lactamase CTX-M-9A 100.0 2.6E-35 1.1E-39  233.3  17.9  209   30-245    21-238 (263)
 20 3c5a_A Class A carbapenemase K 100.0 7.5E-36 3.1E-40  236.6  14.8  210   30-246    20-239 (264)
 21 1o7e_A L2 beta lactamase; hydr 100.0 2.5E-35 1.1E-39  233.4  13.3  231   30-264    32-275 (276)
 22 3p09_A Beta-lactamase; structu 100.0 5.5E-36 2.3E-40  237.4   9.8  236   27-266    36-287 (290)
 23 1bue_A Protein (imipenem-hydro 100.0 8.1E-35 3.4E-39  230.3  13.4  210   30-245    20-239 (265)
 24 1hzo_A Beta-lactamase; mixed a 100.0   1E-33 4.4E-38  223.5  17.9  230   30-266    22-266 (271)
 25 1g6a_A Beta-lactamase PSE-4; c 100.0   2E-32 8.4E-37  215.7  20.2  238   26-270    19-269 (271)
 26 1bsg_A Beta lactamase, penicil 100.0 5.3E-33 2.2E-37  219.3  16.0  212   30-248    19-243 (266)
 27 3lez_A Beta-lactamase; antibio 100.0 6.9E-33 2.9E-37  218.6  15.1  212   27-247    13-235 (260)
 28 1e25_A Extended-spectrum beta- 100.0 7.6E-33 3.2E-37  218.3  13.2  234   28-268    18-277 (282)
 29 3cjm_A Putative beta-lactamase 100.0 9.2E-32 3.9E-36  211.7  18.1  219   30-269    53-281 (282)
 30 1ghp_A Beta-lactamase, penicil 100.0 7.8E-31 3.3E-35  206.0  15.7  232   26-267    11-258 (258)
 31 1alq_A CP254 beta-lactamase; h 100.0 6.6E-29 2.8E-33  194.3  12.2  191   30-230    61-261 (266)
 32 2wuq_A BLAB, beta-lactamase re  99.9 4.8E-23   2E-27  158.6  15.6  208   29-245    22-282 (318)
 33 3a3d_A PBP4, penicillin-bindin  99.7 6.1E-15 2.5E-19  109.2  20.9  141  101-244   270-421 (453)
 34 1w5d_A Penicillin-binding prot  99.6 9.1E-14 3.8E-18  102.0  17.8  140  100-246   284-440 (462)
 35 2ex2_A Penicillin-binding prot  99.6   3E-13 1.3E-17   98.9  16.7  142  101-245   273-426 (458)
 36 1w79_A D-alanyl-D-alanine carb  99.5 2.8E-12 1.2E-16   92.9  18.2  135  103-245   286-437 (489)
 37 3hbr_A OXA-48; class D beta-la  99.3 9.9E-11 4.2E-15   83.6  16.0  185   30-245    43-239 (265)
 38 2iwb_A Methicillin resistance   99.2 1.3E-09 5.5E-14   76.7  15.1  186   29-244    24-220 (246)
 39 1k38_A Penicillinase, beta-lac  99.2 2.8E-09 1.2E-13   74.7  16.6  207   29-267    21-239 (254)
 40 1nrf_A Regulatory protein BLAR  99.2 1.3E-09 5.4E-14   76.7  14.8  183   30-244    36-231 (262)
 41 1zkj_A CMY-10, extended-spectr  99.1 1.8E-08 7.4E-13   69.8  16.6  137   36-179    34-241 (359)
 42 2ffy_A Beta-lactamase; AMPC, d  99.1 2.2E-08 9.1E-13   69.3  16.7  135   37-180    31-237 (358)
 43 2wzx_A Beta-lactamase; inhibit  99.0 3.3E-08 1.4E-12   68.2  16.8  135   36-180    33-242 (371)
 44 3i7j_A Beta-lactamase MB2281C;  99.0 3.2E-09 1.3E-13   74.4  11.5  140   29-179    15-165 (280)
 45 1k55_A Beta lactamase OXA-10;   99.0 3.7E-08 1.5E-12   67.9  16.4  185   29-245    19-219 (246)
 46 3g4p_A Beta-lactamase OXA-24;   99.0 4.2E-08 1.8E-12   67.5  16.6  188   29-244    22-218 (244)
 47 2qmi_A PBP related beta-lactam  99.0 6.7E-09 2.8E-13   72.4  12.4  136   36-180    27-254 (447)
 48 3isg_A Penicillinase, beta-lac  99.0 5.6E-08 2.4E-12   66.8  16.6  190   29-244    17-223 (251)
 49 1xkz_A Regulatory protein BLAR  99.0 6.8E-08 2.9E-12   66.3  16.4  189   29-244    31-227 (255)
 50 2drw_A DAA, D-amino acid amida  99.0 3.2E-07 1.3E-11   62.2  19.1  132   46-179    51-261 (363)
 51 1yqs_A D-alanyl-D-alanine carb  98.9 6.1E-08 2.6E-12   66.5  14.8  124   46-180    53-257 (349)
 52 1ei5_A D-aminopeptidase, DAP;   98.9 1.1E-07 4.6E-12   65.0  15.1  220   29-266    23-332 (520)
 53 1ci9_A ESTB, protein (carboxyl  98.9 3.1E-08 1.3E-12   68.3  11.0   46   36-81     43-101 (392)
 54 3ozh_A Beta-lactamase/D-alanin  98.8   3E-07 1.3E-11   62.3  14.7  128   46-179    53-245 (351)
 55 3hlc_A Transesterase, LOVD; al  98.7   1E-07 4.3E-12   65.2  10.3  151   27-180    48-308 (432)
 56 2qz6_A Beta-lactamase; psychro  98.7 1.5E-07 6.2E-12   64.2  10.7  136   36-180    29-237 (358)
 57 2dcf_A 6-aminohexanoate-dimer   98.7 1.7E-07   7E-12   63.9   9.7  140   29-179    83-285 (392)
 58 3lo7_A PBPA, penicillin-bindin  98.5 7.7E-06 3.2E-10   53.7  15.5  138   28-180   151-351 (483)
 59 2wad_A Penicillin-binding prot  98.5 4.8E-05   2E-09   48.9  19.1  143   29-179   343-537 (680)
 60 1qme_A Penicillin-binding prot  98.5   2E-05 8.4E-10   51.2  16.8  136   29-179   241-422 (702)
 61 3equ_A PBP-2, penicillin-bindi  98.5 2.6E-05 1.1E-09   50.5  17.3  225   26-267   221-525 (542)
 62 2v2f_F Penicillin binding prot  98.5 1.2E-05 4.9E-10   52.6  14.9  138   29-179    66-229 (390)
 63 3oc2_A Penicillin-binding prot  98.5 2.4E-05   1E-09   50.7  16.4  141   27-180   230-413 (564)
 64 3fwm_A Penicillin-binding prot  98.3   9E-05 3.8E-09   47.2  16.6  202   29-248   419-674 (751)
 65 1vqq_A Saupbp2A, penicillin-bi  97.8 0.00092 3.9E-08   41.1  13.0  140   27-179   321-518 (646)
 66 2olv_A Penicillin-binding prot  96.8  0.0021 8.6E-08   39.0   5.4  138   30-178   303-458 (669)
 67 2bg1_A PBP1B, penicillin-bindi  96.7   0.025 1.1E-06   32.3  10.8  138   29-179   125-279 (494)
 68 2jch_A Penicillin-binding prot  95.0    0.17   7E-06   27.3  10.1  138   29-179   351-505 (720)
 69 1mki_A Probable glutaminase YB  55.7     9.1 0.00038   16.8   4.8   40   31-70     53-92  (330)
 70 1u60_A Probable glutaminase YB  47.8      12 0.00051   16.0   4.5   40   31-70     42-81  (310)
 71 2pby_A Glutaminase; secsg, rik  47.0      12 0.00052   15.9   4.9   40   31-70     41-80  (308)
 72 3czd_A Glutaminase kidney isof  40.1      16 0.00067   15.3   4.4   40   31-70     44-83  (315)
 73 2a3m_A COG3005: nitrate/TMAO r  37.9      11 0.00048   16.1   1.6   49    1-50      1-49  (130)
 74 3ih8_A Salt-tolerant glutamina  37.4      18 0.00074   15.0   4.7   40   31-70     40-79  (456)
 75 2f2f_C CDT C, cytolethal diste  34.0      17 0.00071   15.1   2.0   14    1-14      1-14  (186)
 76 1xub_A Phenazine biosynthesis   29.9       5 0.00021   18.3  -1.3   37  113-155    34-71  (298)
 77 1ksh_B Retinal ROD rhodopsin-s  27.2      26  0.0011   14.0   3.2   21   30-50     21-41  (152)

No 1  
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=100.00  E-value=0  Score=566.61  Aligned_cols=316  Identities=31%  Similarity=0.356  Sum_probs=267.1

Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCCC
Q ss_conf             3578754478568999978962977643998307526989999999985135777787660351787720------0366
Q gi|254780435|r   19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPS   92 (336)
Q Consensus        19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~s   92 (336)
                      ....+|.+.|++|+|||++||+|||+||+|+++||||+|||||+|+++|+++.|+++||++|++|++++.      .++|
T Consensus         4 ~~~~~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~~e~i~~~~~~l~~~v~vs~~a~~~~~~~~~~~s   83 (352)
T 3ita_A            4 QTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSS   83 (352)
T ss_dssp             -CCCCCCCCSSEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGSTTTCGGGTTSS
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC
T ss_conf             88889973215999999999979632590998622899999999999998763899978669946999851044556873


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             44345101234677767677742358999997640111789999999999870983534412357646222256999999
Q gi|254780435|r   93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI  172 (336)
Q Consensus        93 ~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~  172 (336)
                      .++|++|+++|++|||++||++|+||||++|||+++||+++||++||++|++|||+||||.|||||++++|||||+||++
T Consensus        84 ~~~l~~g~~~tv~dLL~~~li~SaNdAA~aLA~~i~Gs~~~Fv~~MN~kAkelG~~~T~f~np~Gl~~~~~~tta~Dla~  163 (352)
T 3ita_A           84 VMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMAL  163 (352)
T ss_dssp             CCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCTTCBCCCSSCCCCTTCBBCHHHHHH
T ss_pred             EEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             35413899999999999988751529999998752899999999999999984899821557777787556346999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCC-CCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHH
Q ss_conf             98987631233110123020001744786014565668-97115332124112000234564288689999837898667
Q gi|254780435|r  173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT  251 (336)
Q Consensus       173 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~-~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~  251 (336)
                      |++++++++|++..+++.+.+.+.++.+.|+|++|+.+ ++++|+|||||++||+||+++++|||+|+|+||||+++...
T Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~n~ll~~~~~~i~G~KTG~t~~aG~~lv~~a~~~g~~~i~Vvlg~~~~~~  243 (352)
T 3ita_A          164 LGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRI  243 (352)
T ss_dssp             HHHHHHHHCHHHHGGGGCCEEEETTEEEECCCGGGGCSSCEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred             HHHHHHHCCCCEEEEEEEEEEECCCEECCCCCCHHCCCCCEEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCHHH
T ss_conf             99997336821077500678704861136767001167827556998874147860899998599069999967998778


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             89999999999985145320234554552---01455542346-543202113455432332113444454426811200
Q gi|254780435|r  252 RNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT  327 (336)
Q Consensus       252 r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~  327 (336)
                      ||.++++|+||+|++|....++.+.....   .+.+....++. ...++..............+.........+|+++++
T Consensus       244 r~~d~~~Ll~~~f~~~~~~~~~~~~~~~~~~~V~~g~~~~v~l~~~~~~~~~lpk~~~~~~~~~i~~~~~~l~APVkkG~  323 (352)
T 3ita_A          244 RFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQ  323 (352)
T ss_dssp             HHHHHHHHHHHHHHHEEEECSSCTTCCSEEEEEESBSSSEEEEECGGGCCEEEETTCGGGEEEEEEESSSSEESCBCTTC
T ss_pred             HHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEECCCCCC
T ss_conf             89999999999975348865301444443104753765389999788779999889756628999987883440568998


Q ss_pred             ECCCEEC
Q ss_conf             0133010
Q gi|254780435|r  328 LLKNKIT  334 (336)
Q Consensus       328 ~~~~~i~  334 (336)
                      .+|+...
T Consensus       324 ~VG~l~v  330 (352)
T 3ita_A          324 VVGTIDF  330 (352)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
T ss_conf             9999999


No 2  
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=100.00  E-value=0  Score=570.60  Aligned_cols=254  Identities=27%  Similarity=0.415  Sum_probs=239.0

Q ss_pred             CCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCC
Q ss_conf             544785689999789629776439983075269899999999851357777876603517877200----3664434510
Q gi|254780435|r   24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKG   99 (336)
Q Consensus        24 ~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g   99 (336)
                      +...+++|||||++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++..    ++|+++|++|
T Consensus        66 ~~~~a~sail~da~tG~iLy~KN~d~~~~pASlTKlMTa~l~le~i~~g~l~ld~~vtis~~a~~~~~~~~~S~~~l~~G  145 (453)
T 3hun_A           66 SAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPG  145 (453)
T ss_dssp             CGGGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTCCCCCCCTT
T ss_pred             CCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCC
T ss_conf             54457617999989994933578498858449999999999999986379882125668999998525888762145289


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCC
Q ss_conf             1234677767677742358999997640111789999999999870983534412357646--------------22225
Q gi|254780435|r  100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYT  165 (336)
Q Consensus       100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~t  165 (336)
                      +++|++|||++||++|+||||++|||+++||+++||++||++|++|||+||||.||||||+              ++|+|
T Consensus       146 ~~~tv~dLL~~lli~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~Np~GL~~~~~~~~~~~~~~~~~~~~t  225 (453)
T 3hun_A          146 QVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVT  225 (453)
T ss_dssp             CEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCTTCBCSSSSCSCHHHHGGGSCGGGTTCCCCBB
T ss_pred             CEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             79889999987677442799999999818989999999999999838988766678888764444345544433343051


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC----CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEE
Q ss_conf             6999999989876312331101230200017447860145656----689711533212411200023456428868999
Q gi|254780435|r  166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA  241 (336)
Q Consensus       166 Ta~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~----~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~  241 (336)
                      ||+||++|+++++++||+++++++...++++..++.|+|++|.    .|+|+||+|||||++||+|||++++|||||+|+
T Consensus       226 TA~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~n~N~~l~~~~~~~~gvdGlKTG~T~~AG~~lv~sa~r~g~~lI~  305 (453)
T 3hun_A          226 TARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQ  305 (453)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEE
T ss_conf             09999999999876373012101475000276564011235556656777742202112035755399999999989999


Q ss_pred             EEECCCC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9837898------66789999999999985145320234554
Q gi|254780435|r  242 VILGALD------RNTRNKVSASLLSMGFYNKTDRKKINYII  277 (336)
Q Consensus       242 Vvlg~~~------~~~r~~~~~~Ll~~~f~~f~~~~~~~~~~  277 (336)
                      ||||+++      ...|+.++++||||||++|+...+..++.
T Consensus       306 Vvlga~~~~~~~~~~~R~~d~~~Lldy~f~~f~~~~l~~kg~  347 (453)
T 3hun_A          306 VIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE  347 (453)
T ss_dssp             EEEEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
T ss_conf             996989866544488899999999999885126999854997


No 3  
>1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A
Probab=100.00  E-value=0  Score=565.13  Aligned_cols=316  Identities=27%  Similarity=0.338  Sum_probs=268.2

Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCCC
Q ss_conf             3578754478568999978962977643998307526989999999985135777787660351787720------0366
Q gi|254780435|r   19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPS   92 (336)
Q Consensus        19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~s   92 (336)
                      ..+.+|.+.|++|||||++||+|||+||+|+++||||+|||||+|+++|++++|+++|+++|++|++++.      .++|
T Consensus         8 ~~p~~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~~ASlTKlMTa~v~le~i~~g~l~~~~~v~vs~~a~~~~~~~~~~~s   87 (363)
T 1z6f_A            8 MIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS   87 (363)
T ss_dssp             CCCCCCCCSEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEECCGGGCGGGCGGGTTSC
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC
T ss_conf             68998976520999999999989000690998186899999999999999873999856569833899852366335875


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             44345101234677767677742358999997640111789999999999870983534412357646222256999999
Q gi|254780435|r   93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI  172 (336)
Q Consensus        93 ~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~  172 (336)
                      +++|++|+++|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++++|+|||+||++
T Consensus        88 ~~~l~~ge~~tv~dLl~~lli~SaNdAA~aLAe~~~Gs~~~Fv~~MN~kA~elG~~~T~f~np~Gl~~~~~~tta~Dla~  167 (363)
T 1z6f_A           88 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL  167 (363)
T ss_dssp             CCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCCSSSCCCCTTCBBCHHHHHH
T ss_pred             CCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf             11345898999999999987656439999999863899999999999999996056650443688872467377899998


Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHH
Q ss_conf             9898763123311012302000174478601456566-897115332124112000234564288689999837898667
Q gi|254780435|r  173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT  251 (336)
Q Consensus       173 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~  251 (336)
                      |++++++++|++..+++.+++++.+..+.|+|.+|.. ++|++|+|||||++||+||+++++|+|+|+|+||||+++...
T Consensus       168 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~G~KTG~t~~AG~~lv~~a~~~g~~~i~Vvlg~~~~~~  247 (363)
T 1z6f_A          168 IGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG  247 (363)
T ss_dssp             HHHHHHHHCHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCSTT
T ss_pred             HHHHHHCCCCCCEEEEEEEEEECCCCEEECCCHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCHHH
T ss_conf             89998458862002456776503784111463344355777606999887135864577899689638999989998567


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             899999999999851453202345545520---145554234-6543202113455432332113444454426811200
Q gi|254780435|r  252 RNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT  327 (336)
Q Consensus       252 r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~  327 (336)
                      ||.++++|++|+|++|....++.+......   ..+....++ ....++..............+.........+|+++++
T Consensus       248 r~~d~~~L~~~~f~~~~~~~~~~~~~~v~~~~V~~g~~~~v~l~~~~~~~~~lpk~~~~~~~~~~~~~~~~l~APvkkG~  327 (363)
T 1z6f_A          248 REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQ  327 (363)
T ss_dssp             TTHHHHHHHHHHHHHEEEEEEECTTSCSEEEECBSBSSSEEEEECSSCEEEEEETTCGGGCEEEEEESSSSCBSCBCTTC
T ss_pred             HHHHHHHHHHHHHHHEEEEEEECCCCCCCCCEEECCCCCEECCCCCCCEEEEEECCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf             79999999999986408996302687211004651444300000367669998888645637999987875204568999


Q ss_pred             ECCCEEC
Q ss_conf             0133010
Q gi|254780435|r  328 LLKNKIT  334 (336)
Q Consensus       328 ~~~~~i~  334 (336)
                      .+|+...
T Consensus       328 ~VG~v~i  334 (363)
T 1z6f_A          328 VVGTINF  334 (363)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
T ss_conf             9999999


No 4  
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}
Probab=100.00  E-value=0  Score=556.02  Aligned_cols=312  Identities=28%  Similarity=0.352  Sum_probs=262.8

Q ss_pred             CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH---CCCCCCCCC
Q ss_conf             78754478568999978962977643998307526989999999985135777787660351787720---036644345
Q gi|254780435|r   21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFK   97 (336)
Q Consensus        21 ~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~---~~~s~~~l~   97 (336)
                      ..+|.+.|++||+||++||+|||+||+|+++||||+|||||+|++++++++|+++||++|++|+.++.   .++|+++|+
T Consensus         2 ~~pP~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~~~~~~~~~~s~~~l~   81 (344)
T 3a3j_A            2 VTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLD   81 (344)
T ss_dssp             CCCCCCCSSEEEEEETTTCCEEEEESTTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTTTCGGGCTTSCCCCCC
T ss_pred             CCCCCCCCCEEEEEECCCCCEEHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCEEEEC
T ss_conf             89985561399999999996902069098885399999999999999997499986788996499985058987325334


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             10123467776767774235899999764011178999999999987098353441235764622225699999998987
Q gi|254780435|r   98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI  177 (336)
Q Consensus        98 ~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~  177 (336)
                      +|+++|++|||++||++||||||++|||+++||+++||++||++|++|||+||||.|||||++++|+|||+|||+|++++
T Consensus        82 ~ge~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~np~Gl~~~~~~ttA~Dla~l~~~~  161 (344)
T 3a3j_A           82 LNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI  161 (344)
T ss_dssp             TTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCSSSSCCCCTTCBBCHHHHHHHHHHH
T ss_pred             CCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHH
T ss_conf             89768899998777651388099999988089899999999999998388535887453235888766599999999998


Q ss_pred             HHHHHHHHCCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEECCCCHHHHHHH
Q ss_conf             631233110123020001744786014565-66897115332124112000234564-2886899998378986678999
Q gi|254780435|r  178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKV  255 (336)
Q Consensus       178 ~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg~~~~~~r~~~  255 (336)
                      ++++|.+..+++.+.+.+.+..+.|+|.++ +.+.|++|+|||||++||+|+++++. ++|+++|+||||+++...||.|
T Consensus       162 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~KTG~t~~ag~~~~~~a~~~~~~~ii~Vvlg~~~~~~r~~d  241 (344)
T 3a3j_A          162 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVE  241 (344)
T ss_dssp             HHHCHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEECTTCCEEEEEEEEESSHHHHHHH
T ss_pred             HCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHH
T ss_conf             54874114565588776511321355531346776744236554003677259998505860899999779982058999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCEE--ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             999999998514532023455455---201455542346-543202--11345543233211344445442681120001
Q gi|254780435|r  256 SASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPN-ISEEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKITLL  329 (336)
Q Consensus       256 ~~~Ll~~~f~~f~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~  329 (336)
                      +++|++|+|++|+..+++.+....   ..+......+.. ...++.  .+............  .......+|+++++.+
T Consensus       242 ~~~L~~~~f~~y~~~~l~~~g~~i~~~~v~~g~~~~v~l~~~~d~~~~vpk~~~~~i~~~i~--~~~~~l~APVkkG~~V  319 (344)
T 3a3j_A          242 SKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKARYE--LADKNLQAPLAKGQVI  319 (344)
T ss_dssp             HHHHHHHHHHHEEEEEEECTTCEEEEEEEESSSSSEEEEECSSCEEEEEETTCTTTCEEEEE--ESSSSEESCBCTTCEE
T ss_pred             HHHHHHHHHHHCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE--ECCCCCCCCCCCCCEE
T ss_conf             99999998853479996048973218888458533799997577799998998664599999--7788652677879899


Q ss_pred             CCEEC
Q ss_conf             33010
Q gi|254780435|r  330 KNKIT  334 (336)
Q Consensus       330 ~~~i~  334 (336)
                      |....
T Consensus       320 G~l~v  324 (344)
T 3a3j_A          320 GKVVY  324 (344)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99999


No 5  
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Probab=100.00  E-value=0  Score=552.00  Aligned_cols=315  Identities=23%  Similarity=0.282  Sum_probs=262.6

Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC----CCCC
Q ss_conf             357875447856899997896297764399830752698999999998513577778766035178772003----6644
Q gi|254780435|r   19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNS   94 (336)
Q Consensus        19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~----~s~~   94 (336)
                      ..+..+.+.|++|||+|++||+|||+||+|+++||||+|||||+|+++|+++.|+++||++|++|+++....    +|.+
T Consensus         5 a~a~~~~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~le~i~~g~i~l~~~v~vs~~~~~~~~~~~~s~~   84 (379)
T 1xp4_A            5 AVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNI   84 (379)
T ss_dssp             -----CCCSBSSEEEEETTTTEEEEEESCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCHHHHHTTTSCCSSCC
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC
T ss_conf             43789974445899999999979145590998878899999999999999876999988479945899863278653101


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------------C
Q ss_conf             34510123467776767774235899999764011178999999999987098353441235764--------------6
Q gi|254780435|r   95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q  160 (336)
Q Consensus        95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------------~  160 (336)
                      + .+|+++|++|||++||++|+||||++|||+++||+++||++||++|++|||++|||.|||||+              +
T Consensus        85 ~-~~G~~~tv~dLl~~lli~S~NdAA~aLA~~i~Gs~~~Fv~~MN~kA~elGm~~T~f~np~GL~~~~~~~~~~~~~~~d  163 (379)
T 1xp4_A           85 P-MEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD  163 (379)
T ss_dssp             C-CTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCCSCBCCCSSCCCGGGTTTCSCTTCCTT
T ss_pred             C-CCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             0-278616799999999886378899999998268399999999999998099644662689987655555567777755


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC----CCCCEEEEEEECCHHHHHEEEEEEEECC
Q ss_conf             222256999999989876312331101230200017447860145656----6897115332124112000234564288
Q gi|254780435|r  161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGD  236 (336)
Q Consensus       161 ~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~----~~~gv~G~KTG~t~~AG~~lv~~a~~~g  236 (336)
                      ++|+|||+||++|+++++++||+++++++.++++++++++.|+|+++.    .|+|++|+|||||+.||+||+++++|||
T Consensus       164 ~~~~sTA~Dla~l~~~~~~~~p~~~~~~~~~~~t~~~~~~~n~N~~l~~~~~~~~gv~G~KTG~T~~AG~~lv~~a~~~g  243 (379)
T 1xp4_A          164 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKG  243 (379)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCGGGHHHHTCSEEEETTEEEECSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf             02266699999999999874835420243014888144455303345687311467421797210014453678898689


Q ss_pred             EEEEEEEECCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCCCCC-CCCCCEEECCCCCCCC
Q ss_conf             68999983789866----789999999999985145320234554552-----0145554234-6543202113455432
Q gi|254780435|r  237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDF-----YQQNLSNEVP-NISEEVCTTQKEIINY  306 (336)
Q Consensus       237 ~~li~Vvlg~~~~~----~r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~v~~~~~~~~~~  306 (336)
                      ||+|+||||+++.+    .||.++++|+||+|++|+...+..+.....     ++......+. ....++..........
T Consensus       244 ~~~i~Vvlg~~~~~~~~~~R~~d~~~Ll~~~f~~~~~~~i~~~~~~~~~~~i~v~~g~~~~v~~~~~~~~~~~~~~~~~~  323 (379)
T 1xp4_A          244 MRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQS  323 (379)
T ss_dssp             EEEEEEEEEECCBTTBTTHHHHHHHHHHHHHHHHEEEEEEECTTCCSSSCBCCBSSSSCSCCBEECSSCEEEEEESSCSS
T ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf             08999997898777634455689999999998635375402489870220477607831179898067779995579755


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCEEC
Q ss_conf             3321134444544268112000133010
Q gi|254780435|r  307 NTQMKEAKDKESHFIDFEKITLLKNKIT  334 (336)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~ki~~~~~~i~  334 (336)
                      ..............+|+++++.+|+...
T Consensus       324 ~~~~~~~~~~~~l~APi~kG~~vG~l~~  351 (379)
T 1xp4_A          324 SQSVQFTPDSKAIPAPLEAGTVVGHLTY  351 (379)
T ss_dssp             CCCCCCCCBSSSBCSCBCTTSEEEEEEC
T ss_pred             CEEEEEEECCCCEECCCCCCCEEEEEEE
T ss_conf             4279999778746315068989999999


No 6  
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}
Probab=100.00  E-value=0  Score=543.36  Aligned_cols=250  Identities=26%  Similarity=0.280  Sum_probs=233.4

Q ss_pred             CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCH
Q ss_conf             78754478568999978962977643998307526989999999985135777787660351787720036644345101
Q gi|254780435|r   21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS  100 (336)
Q Consensus        21 ~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~  100 (336)
                      .+++.+.|++|||||++||+|||+||+|+++||||+|||||+|+++|++     +||++|+||++++..++|+++|++|+
T Consensus         2 ~~~~~i~A~saiv~D~~tG~iL~~kn~~~~~~pASlTKlmT~~v~le~~-----~l~~~v~vs~~a~~~~~s~~~l~~g~   76 (334)
T 3mfd_A            2 NAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESG-----KMDQTVTVSANAVRTEGSAIYLTEGQ   76 (334)
T ss_dssp             --CCCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHHTT-----CTTSEEECCHHHHHCCSSCCCCCTTC
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCEEEECHHHHCCCCCEEEECCCC
T ss_conf             9886763549999999999890206909989568899999999999588-----99986998899943799535354898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf             234677767677742358999997640111789999999999870983534412357646-2222569999999898763
Q gi|254780435|r  101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-~~~~tTa~Dla~l~~~~~~  179 (336)
                      ++|++|||++||++|+||||++|||+++||+++||++||++|++|||++|||.|||||++ ++|+|||+||++|++++++
T Consensus        77 ~~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~n~~GL~~~~~~~sTa~Dla~l~~~~~~  156 (334)
T 3mfd_A           77 KVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAMK  156 (334)
T ss_dssp             EEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTTCBCSSSSCCSCSSSCBBCHHHHHHHHHHHTT
T ss_pred             EEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             76099999999876357799999987269789999999999999588576014675675866777569999999986405


Q ss_pred             HHHHHHCCCCEEECCCCC--EEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHHHHH
Q ss_conf             123311012302000174--478601456566-89711533212411200023456428868999983789866789999
Q gi|254780435|r  180 DFPQYMHYFQIKGLEIKG--KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS  256 (336)
Q Consensus       180 ~~p~~~~~~~~~~~~~~~--~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~  256 (336)
                       +|+|.++++++.+++++  ..+.|+|+||+. |+|++|+|||||++|||||+++++|||+|+|+||||+++   ||.|+
T Consensus       157 -~p~~~~i~~~~~~~~~~~~~~~~N~N~lL~~~~~~~~G~KTG~T~~AG~~lv~~a~~~g~~li~Vvlg~~~---~~~d~  232 (334)
T 3mfd_A          157 -LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPN---DWDDH  232 (334)
T ss_dssp             -SHHHHHHHTCSEEECSSSSCEEECCCHHHHTTCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEESCTT---HHHHH
T ss_pred             -CHHHHHHCCEEEEECCCCCCEEECCCCHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC---CHHHH
T ss_conf             -72244214168997267552213347400204776252485257888841789999999899999927886---27799


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999998514532023455455
Q gi|254780435|r  257 ASLLSMGFYNKTDRKKINYIIKD  279 (336)
Q Consensus       257 ~~Ll~~~f~~f~~~~~~~~~~~~  279 (336)
                      ++|++|+|++|....+..++..+
T Consensus       233 ~~Ll~~~f~~~~~~~l~~~g~i~  255 (334)
T 3mfd_A          233 MKMFNYVFEHYQTYLIAKKGDIP  255 (334)
T ss_dssp             HHHHHHHHHHEEEEEEECSEECG
T ss_pred             HHHHHHHHHHCEEEEECCCCCCC
T ss_conf             99999998626799820389733


No 7  
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=100.00  E-value=0  Score=535.13  Aligned_cols=252  Identities=27%  Similarity=0.411  Sum_probs=233.9

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCCHH
Q ss_conf             4785689999789629776439983075269899999999851357777876603517877200----366443451012
Q gi|254780435|r   26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGST  101 (336)
Q Consensus        26 ~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g~~  101 (336)
                      ...+.++++|++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++..    ++|+++|++|++
T Consensus        32 ~~~~~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~  111 (369)
T 1tvf_A           32 AYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQV  111 (369)
T ss_dssp             GGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCE
T ss_pred             CCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCE
T ss_conf             56863699997899294267809982878999999999999988638988344713579999734587776124438979


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCCCH
Q ss_conf             34677767677742358999997640111789999999999870983534412357646--------------2222569
Q gi|254780435|r  102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTA  167 (336)
Q Consensus       102 ~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~tTa  167 (336)
                      +|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++              .+|+|||
T Consensus       112 ~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA  191 (369)
T 1tvf_A          112 WTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA  191 (369)
T ss_dssp             EEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCH
T ss_pred             EEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCH
T ss_conf             75999999876447778999999870477799999999999984889875667888877544434543343334304029


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC----CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEE
Q ss_conf             9999998987631233110123020001744786014565----668971153321241120002345642886899998
Q gi|254780435|r  168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI  243 (336)
Q Consensus       168 ~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll----~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vv  243 (336)
                      +||++|+++++++||+++++++...++++..++.|+|+++    ..|+|++|+|||||++||+||+++++|||||+|+||
T Consensus       192 ~Dla~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VV  271 (369)
T 1tvf_A          192 RDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVI  271 (369)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf             99999998876348211000227510027511131020115665566773103124536787279999999998999999


Q ss_pred             ECCCCHH------HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3789866------789999999999985145320234554
Q gi|254780435|r  244 LGALDRN------TRNKVSASLLSMGFYNKTDRKKINYII  277 (336)
Q Consensus       244 lg~~~~~------~r~~~~~~Ll~~~f~~f~~~~~~~~~~  277 (336)
                      ||+++..      .||.++++||||+|++|+...++.++.
T Consensus       272 lg~~~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~kg~  311 (369)
T 1tvf_A          272 MGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE  311 (369)
T ss_dssp             EEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
T ss_conf             5899865542478899999999999986266999744997


No 8  
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A
Probab=100.00  E-value=0  Score=504.48  Aligned_cols=240  Identities=25%  Similarity=0.344  Sum_probs=223.5

Q ss_pred             CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH----HHCCCCCCCCC
Q ss_conf             87544785689999789629776439983075269899999999851357777876603517877----20036644345
Q gi|254780435|r   22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFK   97 (336)
Q Consensus        22 ~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~----~~~~~s~~~l~   97 (336)
                      .+|.+.+++|||+|++||+|||+||+|+++||||+|||||+|++++   +|+++||++|+|++.+    ...++|.++|+
T Consensus         2 ~~P~i~a~~aiv~d~~tG~vL~~kn~~~~~~pASlTKlmTa~~~l~---~~~l~ld~~vti~~~~~~~~~~~~~s~~~l~   78 (262)
T 1es5_A            2 TKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLA---QSNLNLDAKVTIQKAYSDYVVANNASQAHLI   78 (262)
T ss_dssp             -CCCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHT---CTTCCTTCEEECCHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCCCCEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHH---HCCCCCCCEEEEEHHHHHHHHCCCCCEEEEC
T ss_conf             9997465189999999995911269099887788999999999998---0899988789984767667640787256225


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf             10123467776767774235899999764011------178999999999987098353441235764622225699999
Q gi|254780435|r   98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA  171 (336)
Q Consensus        98 ~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~G------s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla  171 (336)
                      +|+++||+|||++||+.|+||||++|||++||      +.++||++||++|++|||++|||.||+||++++|+|||+||+
T Consensus        79 ~G~~~tv~dLl~~~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~~lGm~~T~f~n~~Gl~~~~n~sTa~Dla  158 (262)
T 1es5_A           79 VGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLT  158 (262)
T ss_dssp             TTCEEEHHHHHHHHHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHTTCSSCBCSSSSCCSCTTCBBCHHHHH
T ss_pred             CCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99897799999999986156999999985389863212099999999999998378655430467654457758999999


Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCC----------EEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEE
Q ss_conf             99898763123311012302000174----------47860145656689711533212411200023456428868999
Q gi|254780435|r  172 ILSWRIKTDFPQYMHYFQIKGLEIKG----------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA  241 (336)
Q Consensus       172 ~l~~~~~~~~p~~~~~~~~~~~~~~~----------~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~  241 (336)
                      +|++++++ +|.+.++++++.+++..          .+|.|+|+||+.|+|++|+|||||++||+|||+++++||||+|+
T Consensus       159 ~l~~~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~n~N~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~li~  237 (262)
T 1es5_A          159 KIASSAMK-NSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIG  237 (262)
T ss_dssp             HHHHHHTT-SHHHHHHHTCSEECCEEECTTSCEEECCCEECSCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHCC-CCHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEE
T ss_conf             99998512-62155552310277610113687543100004352215689935999546636675799999989979999


Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             983789866789999999999985
Q gi|254780435|r  242 VILGALDRNTRNKVSASLLSMGFY  265 (336)
Q Consensus       242 Vvlg~~~~~~r~~~~~~Ll~~~f~  265 (336)
                      ||||+++.+.||.|+++|+||||.
T Consensus       238 Vvlg~~~~~~r~~d~~~Lld~gFa  261 (262)
T 1es5_A          238 TVLASTSIPARESDATKIMNYGFA  261 (262)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             996989912899999999986614


No 9  
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=499.78  Aligned_cols=251  Identities=22%  Similarity=0.231  Sum_probs=227.8

Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCC
Q ss_conf             35787544785689999789629776439983075269899999999851357777876603517877200366443451
Q gi|254780435|r   19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK   98 (336)
Q Consensus        19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~   98 (336)
                      .....|.+.|++|||+|++||+|||+||+|+++||||+|||||+|+++|++     ++++.++++......+++.++|++
T Consensus        10 ~~~~~P~i~A~saiv~D~~tG~iL~~kn~d~~~~pASlTKlMTa~v~le~~-----~~~~~v~~~~~~~~~~~s~~~l~~   84 (276)
T 2bcf_A           10 GSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDEL-----DLNSTVVADVADTQAECNCVGVKP   84 (276)
T ss_dssp             TCCCCCCCSCSEEEEEETTTCEEEEEESTTCCBCCGGGHHHHHHHHHHHHC-----CTTCEEECCTGGGCCSSCCCCCCT
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHHCEEEEECC
T ss_conf             889999976408999999999890004929982738999999999999834-----789869974455442210343269


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC--CCCCCHHHHHHHHHH
Q ss_conf             012346777676777423589999976401117899999999998709835344123576462--222569999999898
Q gi|254780435|r   99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYTTARDMAILSWR  176 (336)
Q Consensus        99 g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~--~~~tTa~Dla~l~~~  176 (336)
                      |+++|++|||++||+.|+||||++|||++||+ ++||++||++|++|||++|||.||+||+++  +|+|||+||++|+++
T Consensus        85 G~~~tv~dLl~~~lv~S~NdAA~aLA~~~gg~-~~Fv~~MN~~A~~lGm~~T~F~np~Gl~~~~~~~~sTA~Dla~l~~~  163 (276)
T 2bcf_A           85 GRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQ-DVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA  163 (276)
T ss_dssp             TCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTCTTCBCSSSSSSCBTTBSCBBCHHHHHHHHHH
T ss_pred             CCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             98999999998898862377999988875697-57999999999984977566067877999875554689999999999


Q ss_pred             HHHHHHHHHCCCCEEECCCC----CEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCC---CH
Q ss_conf             76312331101230200017----447860145656689711533212411200023456428868999983789---86
Q gi|254780435|r  177 IKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---DR  249 (336)
Q Consensus       177 ~~~~~p~~~~~~~~~~~~~~----~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~---~~  249 (336)
                      +++ +|+|.++++++++.+.    ...+.|+|+||+.|+|++|+|||||++||+||+++++|||+|+|+||||+.   +.
T Consensus       164 ~~~-~p~~~~i~~~~~~~~~~~~~~~~~~n~n~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~lI~vVlg~~~~~~~  242 (276)
T 2bcf_A          164 AMA-NPVFAQIIAEPSAMFPSDDGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGG  242 (276)
T ss_dssp             HHH-SHHHHHHHHCSEEEECCC--CEEEECCCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCCTTC
T ss_pred             HHH-CCHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCCH
T ss_conf             986-8066643435789993566731255534024407882440363024788579999999997999999788777871


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             678999999999998514532023455
Q gi|254780435|r  250 NTRNKVSASLLSMGFYNKTDRKKINYI  276 (336)
Q Consensus       250 ~~r~~~~~~Ll~~~f~~f~~~~~~~~~  276 (336)
                      ..||.|+++|+||||..++...+...+
T Consensus       243 ~~r~~d~~~Lld~gF~~~~~~~v~~~g  269 (276)
T 2bcf_A          243 PTYWDQAATLFDWGFALNPQASVGSLG  269 (276)
T ss_dssp             CCHHHHHHHHHHHHHHSCTTCCSEEC-
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             479999999999873458777146076


No 10 
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=100.00  E-value=2.7e-39  Score=257.59  Aligned_cols=209  Identities=16%  Similarity=0.038  Sum_probs=167.1

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ ++|+|+++||||++|+||++++|++++.|  .||++|+++++....+++.+++.+|+++|++||++
T Consensus        62 gv~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~~--~Ld~~v~i~~~~~~~~~~~~~~~~g~~~tv~~Ll~  138 (307)
T 1w7f_A           62 GIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKSIE--DLNQRITYTRDDLVNYNPITEKHVDTGMTLKELAD  138 (307)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHCCTG--GGGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH
T ss_conf             9999989999888-88899840327899999999999865767--76751466388750589740026898344999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67774235899999764011178999999999987098353441235764------622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||.+|++.+||.     +.||++++++|+.+|++.+..+..      +..|.+|++||+.+...+... +.
T Consensus       139 ~mi~~SdN~Aa~~L~~~lgg~-----~~~~~~~~~lg~~~t~l~~~~~~~~~~~~~~~~~~tt~~~~a~ll~~~~~~-~~  212 (307)
T 1w7f_A          139 ASLRYSDNTAQNLILKQIGGP-----ESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALE-DK  212 (307)
T ss_dssp             HHHHHCCHHHHHHHHHHTTHH-----HHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-SS
T ss_pred             HHHHCCCHHHHHHHHHHHCCH-----HHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CC
T ss_conf             998468459999999980883-----789999997595116357667665678888653434599999999987417-53


Q ss_pred             HHCCCCEEECCCCCEE--EEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC
Q ss_conf             1101230200017447--86014565668971153321241120002345642-8868999983789
Q gi|254780435|r  184 YMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL  247 (336)
Q Consensus       184 ~~~~~~~~~~~~~~~~--~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~  247 (336)
                      .....+.....+....  ..+..+........+|.|||+++.+|+|+++.+.. +|+++|+|||...
T Consensus       213 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~g~~~iivVl~~~  279 (307)
T 1w7f_A          213 LPSEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSR  279 (307)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEECSTTCEEEEEEEECSSSCCEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECC
T ss_conf             5889999999987524526654445689985689875265887067899998699988999999279


No 11 
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1
Probab=100.00  E-value=2.5e-39  Score=257.75  Aligned_cols=227  Identities=14%  Similarity=0.031  Sum_probs=177.7

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ +.|+|+++||||++|+|+++.+++++++|+++||+++++++.....+++.+++.+|+.+|++||++
T Consensus        19 gv~v~dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~   97 (262)
T 2cc1_A           19 GLYAANLQSGRRI-THRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAELCQ   97 (262)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGCCSSCHHHHTTTTSEEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCEECCCCCEEEHHHHHH
T ss_conf             9999999999888-889998498389999999999999755289986538997642303799740126898063999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6777423589999976401117899999999998709835344123576------4622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +||+.|+|+||++|+++++|     .+.||+.++++|+.+|+|.+.++.      ....|++||+||+.+.+++..+. .
T Consensus        98 ~mi~~SdN~Aa~~L~~~~~g-----~~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~sTa~d~~~l~~~l~~~~-~  171 (262)
T 2cc1_A           98 AALQRSDNTAANLLLKTIGG-----PAAVTAFARSVGDERTRLDRWEVELNSAIPGDPRDTSTPAALAVGYRAILAGD-A  171 (262)
T ss_dssp             HHHHSCCHHHHHHHHHHHTH-----HHHHHHHHHHTTCCSCCCCSCTTGGGGCCTTCCTTEECHHHHHHHHHHHHHSS-S
T ss_pred             HHHHHCCHHHHHHHHHHCCC-----CHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-C
T ss_conf             99873447999999998499-----54889999964466612576655556788998877644999999999997588-5


Q ss_pred             HHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEEC-CCCHHHHHHHHHHHHH
Q ss_conf             11012302000174478601456566897115332124112000234564-288689999837-8986678999999999
Q gi|254780435|r  184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG-ALDRNTRNKVSASLLS  261 (336)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg-~~~~~~r~~~~~~Ll~  261 (336)
                      +....+..-..+-.....+...-........|.|||+++.+++|.++.+. ++|+++|+|||. .+..+.++.++.+++.
T Consensus       172 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~g~v~~~~g~~~i~vv~~~~~~~~~~~~~~~~li~  251 (262)
T 2cc1_A          172 LSPPQRGLLEDWMRANQTSSMRAGLPEGWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPLIG  251 (262)
T ss_dssp             SCHHHHHHHHHHHHTCSCCSGGGGSCTTCEEEEEEEECSTTCEEEEEEEECTTSCEEEEEEEEEESSSCTTCCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             79899999999985273788544478886178886154888578999999289989999999689986605899999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780435|r  262 MG  263 (336)
Q Consensus       262 ~~  263 (336)
                      +.
T Consensus       252 ~i  253 (262)
T 2cc1_A          252 EL  253 (262)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 12 
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae}
Probab=100.00  E-value=1.5e-38  Score=253.11  Aligned_cols=212  Identities=12%  Similarity=-0.005  Sum_probs=166.3

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCC-CCCCCCCCHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036-64434510123467776
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNAL  108 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~-s~~~l~~g~~~tv~dll  108 (336)
                      +..++|.+||+++ ++|+|+++|+||++|+|+++++++++++|+++|+++|++++.....++ ....+.+|+++|++||+
T Consensus        40 gv~v~d~~tg~~~-~~n~d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~tl~~Ll  118 (287)
T 2qpn_A           40 GVAIVDPQGEIVA-GHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAA  118 (287)
T ss_dssp             EEEEECTTCCEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGCCSSCHHHHHHTTTTEEEHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCEEEECCCCEEEHHHHH
T ss_conf             9999989999489-876997425458999999999999876388776615750588852579750342589787899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC------CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7677742358999997640111789999999999870983534412------3576462222569999999898763123
Q gi|254780435|r  109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN------AHGVVQHGHYTTARDMAILSWRIKTDFP  182 (336)
Q Consensus       109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n------~~Gl~~~~~~tTa~Dla~l~~~~~~~~p  182 (336)
                      .+|++.|+|+||++|++++||..     .+|+.++++|++++++.+      +.+..+..|+|||+||+.+.+++.+. +
T Consensus       119 ~~mi~~SdN~Aa~~L~~~lgg~~-----~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tta~d~~~ll~~l~~~-~  192 (287)
T 2qpn_A          119 QAAVQLSDNGATNLLLREIGGPA-----AMTQYFRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYG-G  192 (287)
T ss_dssp             HHHHHHCCHHHHHHHHHHHTHHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-S
T ss_pred             HHHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C
T ss_conf             99999552699999999948955-----78999998263433136777655667889865640799999999998744-3


Q ss_pred             HHHCCCCEEECCCCCEEEEECCCCCC--CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC
Q ss_conf             31101230200017447860145656--6897115332124112000234564288689999837898
Q gi|254780435|r  183 QYMHYFQIKGLEIKGKKYPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD  248 (336)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~N~N~ll~--~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~  248 (336)
                      .+.+........+......+.|.+..  ......|.|||+++.+++|+++.++.+|+++|+|||...+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~~~~ii~Vl~~~~  260 (287)
T 2qpn_A          193 ALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAVYTTAP  260 (287)
T ss_dssp             SSCHHHHHHHHHHHHTCSSCTTSGGGGSCTTSEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECT
T ss_pred             CCCHHHHHHHHHHHHCCEECHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCEEEEEEEEECCC
T ss_conf             34789999999997368352223430489897689960536786559999999899569999992599


No 13 
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli}
Probab=100.00  E-value=1e-37  Score=248.04  Aligned_cols=229  Identities=16%  Similarity=0.039  Sum_probs=174.9

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ ++|+|+++||||++|+|+++++++++++|+++||++|+++++....+++.+++.+|+.++++||++
T Consensus        45 gv~v~Dl~tG~~~-~~n~d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v~i~~~~~~~~s~~~~~~~g~~~tv~dLl~  123 (294)
T 3dw0_A           45 GVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA  123 (294)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEECCCGGGCCSSCHHHHHTTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9999989999886-788997342255999999999999886499887836996478703799721035788667999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             677742358999997640111789999999999870983534412357------64622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------VVQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G------l~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||.+|+|+++|     .+.||++++++|++++++.+..+      ..+..|.+|++|++.+..++..+ +.
T Consensus       124 ~mi~~SdN~Aa~~L~~~lgg-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~t~~d~a~~l~~l~~~-~~  197 (294)
T 3dw0_A          124 AAVQYSDNAAANLLLKELGG-----PAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLG-SA  197 (294)
T ss_dssp             HHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-SS
T ss_pred             HHHHHCCHHHHHHHHHHHCC-----CCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CC
T ss_conf             99973759999999998677-----5169999998073332047887644588998754515599999999999838-75


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEEC-CEEEEEEEECCC---CH---HHHH
Q ss_conf             110123020001--744786014565668971153321241120-0023456428-868999983789---86---6789
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQG-DQSLIAVILGAL---DR---NTRN  253 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~-g~~li~Vvlg~~---~~---~~r~  253 (336)
                      ...........+  ......+.++......+..|.|||+++.+| +|.++.+..+ ++++++||+-..   +.   +.-.
T Consensus       198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~dvgiv~~~~~~~~iiaV~~~~~~~~~~~~~~li  277 (294)
T 3dw0_A          198 LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI  277 (294)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf             34678999999872575477511014889978998731367876488999999389987999999179999989999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999985
Q gi|254780435|r  254 KVSASLLSMGFY  265 (336)
Q Consensus       254 ~~~~~Ll~~~f~  265 (336)
                      .+..+++-.+|.
T Consensus       278 ~~iar~v~~~l~  289 (294)
T 3dw0_A          278 AAAARLALEGLG  289 (294)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999972


No 14 
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=100.00  E-value=5.2e-37  Score=243.68  Aligned_cols=211  Identities=17%  Similarity=0.072  Sum_probs=167.6

Q ss_pred             CC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             85-68999978962977643998307526989999999985135777787660351787720036644345101234677
Q gi|254780435|r   28 LP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN  106 (336)
Q Consensus        28 a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~d  106 (336)
                      ++ +++++|.+||++||++|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|+.+|++|
T Consensus        17 ~~~~~~v~D~~tg~~l~~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~~~   96 (263)
T 1m40_A           17 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRE   96 (263)
T ss_dssp             SEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGCTTTCEEHHH
T ss_pred             CEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCEEHHH
T ss_conf             85999999999997877788998544578999999999999865277787747998420023799730126898164999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             76767774235899999764011178999999999987098353441235764------622225699999998987631
Q gi|254780435|r  107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      |+.+|++.|+|+||.+|+++++|.     +.||+.++++|++++.+.++.+..      ...+.+||+||+++.+++.+.
T Consensus        97 ll~~mi~~SdN~Aa~~L~~~~gg~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ta~d~a~ll~~l~~~  171 (263)
T 1m40_A           97 LCSAAITMSDNTAANLLLTTIGGP-----KELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMATTLRKLLTG  171 (263)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHTSH-----HHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             999988628679999999984693-----489999998354666516887766689999876740899999999999838


Q ss_pred             HHHHHCCCCEEECCCCCEEEEECCCCCC---CCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEEC
Q ss_conf             2331101230200017447860145656---68971153321241120002345642886-89999837
Q gi|254780435|r  181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILG  245 (336)
Q Consensus       181 ~p~~~~~~~~~~~~~~~~~~~N~N~ll~---~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg  245 (336)
                       +.+.+.....-..+..... +.+.++.   ......|.|||++..+++|+++.+..+|+ ++++||+.
T Consensus       172 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~v~~KTG~~~~~~~~~~~iv~~~g~~~~ivvv~~  238 (263)
T 1m40_A          172 -ELLTLASRQQLIDWMEADK-VAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYT  238 (263)
T ss_dssp             -TTSCHHHHHHHHHHHHCCS-SCTTTGGGGCCTTCEEEEEEEECSTTCEEEEEEEESTTCCCEEEEEEE
T ss_pred             -CCCCHHHHHHHHHHHHCCE-ECCHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf             -8468888999998874481-360000123899964888316577887149999991997599999981


No 15 
>3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A
Probab=100.00  E-value=2.2e-38  Score=252.07  Aligned_cols=214  Identities=14%  Similarity=-0.003  Sum_probs=173.7

Q ss_pred             CCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             856-8999978962977643998307526989999999985135777787660351787720036644345101234677
Q gi|254780435|r   28 LPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN  106 (336)
Q Consensus        28 a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~d  106 (336)
                      ++- ..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+  ||+.+++++.....+++.+++.+|+.+|++|
T Consensus        15 ~~~~v~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~--ld~~v~~~~~~~~~~~~~~~~~~g~~~tv~~   91 (265)
T 3m6b_A           15 ARLGVYVPATGTTAAI-EYRADERFAFCSTFKAPLVAAVLHQNPLTH--LDKLITYTSDDIRSISPVAQQHVQTGMTIGQ   91 (265)
T ss_dssp             CEEEEEECCCSSCCCE-EESTTSCEECGGGGHHHHHHHHHHHSCGGG--GGCEECCCGGGCCSCCTTGGGCTTTCEEHHH
T ss_pred             CEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHH
T ss_conf             8699999999999889-989997388389999999999998577678--8842785499950689852025888514999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHH
Q ss_conf             7676777423589999976401117899999999998709835344123576462------2225699999998987631
Q gi|254780435|r  107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------GHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~------~~~tTa~Dla~l~~~~~~~  180 (336)
                      |+++||+.|+|+||++|++.+|| .+.|.++||++++++|+++|+|.+++|.+..      .+.+|++|++++.+++...
T Consensus        92 ll~~mi~~SdN~Aa~~L~~~~Gg-~~~~~~~~n~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~t~~~~a~~l~~l~~~  170 (265)
T 3m6b_A           92 LCDAAIRYSDGTAANLLLADLGG-PGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLG  170 (265)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHCS-TGGGHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999984338999999999689-68899999999997598643613677665544567641022599999999999737


Q ss_pred             H---HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC
Q ss_conf             2---33110123020001744786014565668971153321241120002345642-8868999983789
Q gi|254780435|r  181 F---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL  247 (336)
Q Consensus       181 ~---p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~  247 (336)
                      .   |...+..  ...........+.+.......+..|.|||+++.+++|.++.++. +|+++|++||...
T Consensus       171 ~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~KtG~~~~~~~~dvgiv~~~~g~~~iiaV~~~~  239 (265)
T 3m6b_A          171 NALPPDKRALL--TDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDR  239 (265)
T ss_dssp             SSSCHHHHHHH--HHHHHTCSSCTTTHHHHSCTTSEEEEEEEEETTTEEEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCCCHHHHHHH--HHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEECC
T ss_conf             65688899999--9997458877776445678885688876367877479999999599998999999579


No 16 
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=100.00  E-value=2.7e-36  Score=239.34  Aligned_cols=232  Identities=16%  Similarity=0.079  Sum_probs=174.0

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC-CCCCCCCCCCHHHHHHHHH
Q ss_conf             689999789629776439983075269899999999851357777876603517877200-3664434510123467776
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNAL  108 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~-~~s~~~l~~g~~~tv~dll  108 (336)
                      ++.++|.+||+++ +.|+|+++|+||++|+|+++.+++++++|+++||++|++++..... .++..++++|+.+|++||+
T Consensus        37 ~v~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~G~l~ld~~v~i~~~~~~~~~~~~~~~~~g~~~tl~~ll  115 (298)
T 2j9o_A           37 GLYFFNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMRPDLIAPEAGTLQYQKPNSQYAALEVA  115 (298)
T ss_dssp             EEEEEETTTCEEE-EEBTTSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEEECCGGGCCCSSCSGGGSCTTCEEEHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHCCCCCCCCEECCCCCEEEHHHHH
T ss_conf             9999989999889-988995132557999999999999987499896556687377605799752000699766899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             76777423589999976401117899999999998709835344123576462222569999999898763123311012
Q gi|254780435|r  109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF  188 (336)
Q Consensus       109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~~~~~~  188 (336)
                      .+|++.|+|+|+.+|++.+||     .+.||++++++|+++|+|.+|.|..+..+.+||+|++.+..++... +......
T Consensus       116 ~~mi~~SdN~Aa~~L~~~~g~-----~~~~n~~~~~~G~~~t~~~~~~~~~~~~~~~ta~d~~~ll~~l~~~-~~~~~~~  189 (298)
T 2j9o_A          116 ELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQG-EILSPRS  189 (298)
T ss_dssp             HHHHHSCCHHHHHHHHHHTTC-----HHHHHHHHHHTTCSSCBCCSCTTCTTCCSEECHHHHHHHHHHHHTT-CSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHH
T ss_conf             999985448899999999577-----4999999997699771522788765668867999999999999818-9789899


Q ss_pred             CEEECCC-CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf             3020001-74478601456566897115332124112000234564288689999837898--66789999999999985
Q gi|254780435|r  189 QIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFY  265 (336)
Q Consensus       189 ~~~~~~~-~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~--~~~r~~~~~~Ll~~~f~  265 (336)
                      +..-... ......+..+-........|.|||++..++.+......++|+++|+|||....  ......-...+-...|+
T Consensus       190 ~~~l~~~m~~~~~~~~i~~~lp~~~~v~~KtG~~~~~~~d~giv~~~~g~~yi~avl~~~~~~~~~~~~~i~~i~~~v~~  269 (298)
T 2j9o_A          190 RDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMVYQ  269 (298)
T ss_dssp             HHHHHHHHTSCSCCSSGGGGSCTTCEEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEECSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999708787630231899988987635612610589999947998899999947997618899999999999999


Q ss_pred             HCC
Q ss_conf             145
Q gi|254780435|r  266 NKT  268 (336)
Q Consensus       266 ~f~  268 (336)
                      .|.
T Consensus       270 ~f~  272 (298)
T 2j9o_A          270 AFE  272 (298)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             985


No 17 
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A*
Probab=100.00  E-value=1.8e-36  Score=240.37  Aligned_cols=236  Identities=16%  Similarity=0.016  Sum_probs=173.2

Q ss_pred             CCCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             4785-689999789629776439983075269899999999851357777876603517877200366443451012346
Q gi|254780435|r   26 NKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL  104 (336)
Q Consensus        26 ~~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv  104 (336)
                      ..++ +++++|+.||++|+++|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|..+|+
T Consensus        15 ~~g~vg~~v~D~~tG~~l~~~n~d~~~~~AS~~Kl~i~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~   94 (265)
T 1n9b_A           15 LSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTV   94 (265)
T ss_dssp             HTSEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGGTTTCEEH
T ss_pred             CCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCCCCCCEEEH
T ss_conf             59869999999999938667889985444889999999999998774898867179964677046897400367972679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-------ECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             777676777423589999976401117899999999998709835344-------1235764622225699999998987
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-------MNAHGVVQHGHYTTARDMAILSWRI  177 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-------~n~~Gl~~~~~~tTa~Dla~l~~~~  177 (336)
                      +||+.+|++.|+|+||.+|+++++|..     .||+.++++|.+.+++       .++.+ .+..+.+||+|++.+..++
T Consensus        95 ~~ll~~mi~~SdN~Aa~~L~~~igg~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ta~d~a~ll~~l  168 (265)
T 1n9b_A           95 GELCAAAITMSDNSAANLLLATVGGPA-----GLTAFLRQIGDNVTRLDRWETELNEALP-GDARDTTTPASMAATLRKL  168 (265)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCCSCBCCCCTTGGGCCCT-TCCTTEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             999987360497469999999956855-----8999999952476641677775567889-9643543799999999999


Q ss_pred             HHHHHHHHCCCCEEECC--CCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEECCCC---HHH
Q ss_conf             63123311012302000--1744786014565668971153321241120002345642886-89999837898---667
Q gi|254780435|r  178 KTDFPQYMHYFQIKGLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALD---RNT  251 (336)
Q Consensus       178 ~~~~p~~~~~~~~~~~~--~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg~~~---~~~  251 (336)
                      ..+. .+.......-..  .......+..+......+..|.|||+++.+++|+++.+..+|+ ++++||+...+   ...
T Consensus       169 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dv~iv~~~~~~~~iv~v~~~~~~~~~~~  247 (265)
T 1n9b_A          169 LTSQ-RLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAE  247 (265)
T ss_dssp             HHSS-SSCHHHHHHHHHHHHTCSSSHHHHHTTSCTTCEEEEEEEEETTTEEEEEEEEESTTCCCEEEEEEEESCCCCHHH
T ss_pred             HHCC-CCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHH
T ss_conf             7477-545889999999874575340000123888876899744278888028999997999589999994799889899


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             89999999999985145
Q gi|254780435|r  252 RNKVSASLLSMGFYNKT  268 (336)
Q Consensus       252 r~~~~~~Ll~~~f~~f~  268 (336)
                      +.+-...+-...+++|+
T Consensus       248 ~~~~i~~i~~~l~~~~~  264 (265)
T 1n9b_A          248 RNQQIAGIGAALIEHWQ  264 (265)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999966


No 18 
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A
Probab=100.00  E-value=1.4e-35  Score=235.02  Aligned_cols=228  Identities=14%  Similarity=0.014  Sum_probs=175.1

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ ++|+|+++||||++|+|++++++++++  +.+||+++++++.....+++.+++.+|+.+|++||+.
T Consensus        20 gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~--~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~~l~~   96 (265)
T 2wk0_A           20 GIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKS--IEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELAD   96 (265)
T ss_dssp             EEEEEETTTCCEE-EESTTCEEECGGGHHHHHHHHHHHHCC--TGGGGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEHHHHCCCCCCCCCCCCCCEEHHHHHH
T ss_conf             9999989999888-988996472388999999999999668--7775746997566531688742346898333999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6777423589999976401117899999999998709835344123576------4622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||.+|++++||     ...+|+.++++|+++|++.+..+.      .+..+++|++|++.+...+..+.+ 
T Consensus        97 ~mi~~SdN~Aa~~L~~~igg-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~l~~~~~-  170 (265)
T 2wk0_A           97 ASLRYSDNTAQNLILKQIGG-----PESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALEDK-  170 (265)
T ss_dssp             HHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHTSTT-
T ss_pred             HHHHHCCHHHHHHHHHHHCC-----CCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf             99986356999999998543-----316999999620445101345565567889974444579999999999960765-


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC-C-----HHHHHH
Q ss_conf             110123020001--744786014565668971153321241120002345642-8868999983789-8-----667899
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL-D-----RNTRNK  254 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~-~-----~~~r~~  254 (336)
                      ........-..+  ......+.++......+..|.|||+++.+++|+++.+.. +|+++|+|||... .     .+....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~~~giv~~~~g~~yiiaVl~~~~~~~~~~~~~~i~  250 (265)
T 2wk0_A          171 LPSEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYDDKLIA  250 (265)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECSSSCCEEEEEEEECSSTTCCCCTHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             68889999999985375574321245788866999461458770789999992899889999990799988789999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999851
Q gi|254780435|r  255 VSASLLSMGFYN  266 (336)
Q Consensus       255 ~~~~Ll~~~f~~  266 (336)
                      +..+++-.+|++
T Consensus       251 ~i~~~i~~~~~~  262 (265)
T 2wk0_A          251 EATKVVVKALNM  262 (265)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999866


No 19 
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ...
Probab=100.00  E-value=2.6e-35  Score=233.34  Aligned_cols=209  Identities=17%  Similarity=0.056  Sum_probs=164.9

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..|+|.+||+++ ++|+|+++||||++|+|+++++++++++|+++|+++|++++.....+++.++..+|..++++||+.
T Consensus        21 ~v~v~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ll~   99 (263)
T 2p74_A           21 GVALIDTADNTQV-LYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSA   99 (263)
T ss_dssp             EEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTGGGCEEECCGGGCCSCCTTGGGGTTSEEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9999999999889-988997075278999999999999876389997746996066602799841036798431999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67774235899999764011178999999999987098353441------235764622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM------NAHGVVQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~------n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      .|++.|+|+|+++|+++++|.     +.||+.++++|+.+|++.      ++....+..|.+||+|++++..++..+.+ 
T Consensus       100 ~mi~~SdN~Aa~~L~~~igg~-----~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~ll~~l~~~~~-  173 (263)
T 2p74_A          100 AALQYSDNTAMNKLIAQLGGP-----GGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHA-  173 (263)
T ss_dssp             HHHHHCCHHHHHHHHHHTTSH-----HHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS-
T ss_pred             HHHHHCCHHHHHHHHHHHCCC-----HHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf             998744479999999984884-----17999999769633873787644567889976663369999999999983887-


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEEC
Q ss_conf             110123020001--744786014565668971153321241120002345642886-89999837
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILG  245 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg  245 (336)
                      +.......-..+  ......+..+.........|.|||+++.+++|.++.+..+|+ ++++||+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dvgiv~~~g~~~~iv~v~~  238 (263)
T 2p74_A          174 LGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYF  238 (263)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEE
T ss_conf             88899999999985586665432333788887888405867875789999996999689999994


No 20 
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=100.00  E-value=7.5e-36  Score=236.61  Aligned_cols=210  Identities=15%  Similarity=0.036  Sum_probs=167.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+++|+++|++++.....+.+.+++.+|+.+|++||+.
T Consensus        20 gv~v~Dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~   98 (264)
T 3c5a_A           20 GVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA   98 (264)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTSTTCEECCCGGGCCSSCHHHHHTTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9999989999888-988997584288999999999998515306885651784276614799841105788718999997


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             677742358999997640111789999999999870983534412------35764622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN------AHGVVQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n------~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||++|+++++|.     +.+|+.++++|++++++.+      +.+..+..|++||+|++++.+++..+. .
T Consensus        99 ~mi~~SdN~Aa~~L~~~ig~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~~~ll~~l~~~~-~  172 (264)
T 3c5a_A           99 AAVQYSDNAAANLLLKELGGP-----AGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGS-A  172 (264)
T ss_dssp             HHHHSCCHHHHHHHHHHTTHH-----HHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSS-S
T ss_pred             HHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-C
T ss_conf             645069389999999995796-----0679999980142203567777556888886545135999999999997487-6


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEEC-CEEEEEEEECC
Q ss_conf             110123020001--744786014565668971153321241120-0023456428-86899998378
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQG-DQSLIAVILGA  246 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~-g~~li~Vvlg~  246 (336)
                      +....+..-..+  ......+..+......+..|.|||+++.+| +|.++.+.++ ++++|+||+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiivV~~~  239 (264)
T 3c5a_A          173 LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTR  239 (264)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECCGGGCEEEEEEEECTTSCCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf             7999999999997357105554454478886689987255888747899999808997899999936


No 21 
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Probab=100.00  E-value=2.5e-35  Score=233.41  Aligned_cols=231  Identities=19%  Similarity=0.106  Sum_probs=177.9

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|..||+++ ++|+|+++|+||++|+|+++++|+++++|+++||++|+++++....+++.+++.+|.++|++||+.
T Consensus        32 gv~~~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~  110 (276)
T 1o7e_A           32 GVTLLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCR  110 (276)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCCCCCCCCCCEEHHHHHH
T ss_conf             9999989999887-777997524349999999999999886489675633110475603689742136888310999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHH
Q ss_conf             677742358999997640111--789999999999870983534412357646222256999999989876312---331
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQY  184 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs--~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~---p~~  184 (336)
                      .|++.|+|+||++|+++++|.  ..+|++.|+.+...+++....+..... ....+.+|++|++.+.+++....   |..
T Consensus       111 ~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tt~~~~a~ll~~l~~~~~~~~~~  189 (276)
T 1o7e_A          111 ATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPELNSFAK-GDPRDTTTPAAMAATLQRVVLGEVLQPAS  189 (276)
T ss_dssp             HHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCCCCCTTGGGCCBT-TBCTTEECHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf             99985648999999999559168999999826401123454442347889-99778484999999999998388678789


Q ss_pred             HCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEE--EECCEEEEEEEE---CCCCHHHHH---HHH
Q ss_conf             101230200017447860145656689711533212411200023456--428868999983---789866789---999
Q gi|254780435|r  185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA--IQGDQSLIAVIL---GALDRNTRN---KVS  256 (336)
Q Consensus       185 ~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a--~~~g~~li~Vvl---g~~~~~~r~---~~~  256 (336)
                      ....  ...........+.++......+..+.|||+++.+++|.++..  .+||+++|+|||   +..+...|.   .+.
T Consensus       190 ~~~~--~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~d~giv~~~~~g~~~iiaV~~~~~~~~~~~~~~~ia~i  267 (276)
T 1o7e_A          190 RQQL--ADWLIDNETGDACLRAGLGKRWRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQAGAISYEQRASVLAQV  267 (276)
T ss_dssp             HHHH--HHHHHTCSSCTTTHHHHSCTTEEEEEEEEECSSSEEEEEEEEEETTSSCCEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHH--HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9999--99985683265422245787765767614257786356999996589967999999479999989999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254780435|r  257 ASLLSMGF  264 (336)
Q Consensus       257 ~~Ll~~~f  264 (336)
                      .++++++|
T Consensus       268 ~r~v~~~~  275 (276)
T 1o7e_A          268 GRIADRLI  275 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
T ss_conf             99999864


No 22 
>3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp}
Probab=100.00  E-value=5.5e-36  Score=237.45  Aligned_cols=236  Identities=13%  Similarity=0.038  Sum_probs=165.0

Q ss_pred             CCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCC--CCCCCCHHHH
Q ss_conf             785-6899997896297764399830752698999999998513577778766035178772003664--4345101234
Q gi|254780435|r   27 KLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMT  103 (336)
Q Consensus        27 ~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~--~~l~~g~~~t  103 (336)
                      .++ +..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+++|+++|++++.....+++.  ..+..|+.++
T Consensus        36 ~~~~gv~~~Dl~tG~~~-~~n~d~~~p~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~i~~~~~~~~~~~~~~~~~~~~~~~  114 (290)
T 3p09_A           36 DGKIGIYTLNTDDKTNI-KYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPITAKNVGKTLT  114 (290)
T ss_dssp             CSEEEEEEECC----CC-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEECCHHHHTTCCCCTTGGGCTTSEEE
T ss_pred             CCEEEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCEEECCCCEEH
T ss_conf             98399999989999889-88899750426799999999999986548977665168529995136887543434883656


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             677767677742358999997640111--789999999999870983534412357646222256999999989876312
Q gi|254780435|r  104 LDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF  181 (336)
Q Consensus       104 v~dll~~~li~S~Ndaa~aLAe~i~Gs--~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~  181 (336)
                      +++|+++ ++.|+|+||.+|+++++|.  .++|++.|+.++.++++..+.|.++.+. +..|+|||+||++|.+++.+. 
T Consensus       115 ~~~l~~~-~~~SdN~aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~-~~~n~tTa~dla~ll~~l~~~-  191 (290)
T 3p09_A          115 ISQLNYA-AILSDSPASNILVRELGGLQNLNKFIKKLGDNDTIITADEPEINYTQPH-SNINKTTPKAITKDIYKLAFG-  191 (290)
T ss_dssp             HHHHHHH-HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTT-BCTTEECHHHHHHHHHHHHHS-
T ss_pred             HHHHHHC-CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHC-
T ss_conf             9999750-4467829999999996385489999998397232126776322357899-755634899999999999718-


Q ss_pred             HHHHCCCCEEECCCCCEE--EEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEE-ECCEEEEEEEECCCCHHH------
Q ss_conf             331101230200017447--86014565668971153321241120-00234564-288689999837898667------
Q gi|254780435|r  182 PQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAI-QGDQSLIAVILGALDRNT------  251 (336)
Q Consensus       182 p~~~~~~~~~~~~~~~~~--~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~-~~g~~li~Vvlg~~~~~~------  251 (336)
                      +.+.+..+.....+....  ..+.++........+|.|||+++.+| +|.++.+. ++|+++|+|||.......      
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~g~~yii~V~~~~~~~~~~~~~~  271 (290)
T 3p09_A          192 NILDKKHKDIFIKYLQDNNTGANRIAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTNPNDKNAPSNE  271 (290)
T ss_dssp             SSSCHHHHHHHHHHHHHCCTTTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECTTCTTCCCCH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHH
T ss_conf             98898999999999843851322110148988779960356567875789999982899879999990689754759999


Q ss_pred             -HHHHHHHHHHHHHHH
Q ss_conf             -899999999999851
Q gi|254780435|r  252 -RNKVSASLLSMGFYN  266 (336)
Q Consensus       252 -r~~~~~~Ll~~~f~~  266 (336)
                       -..+..+++-..|++
T Consensus       272 ~~ia~i~~~v~~~~~~  287 (290)
T 3p09_A          272 EIIQQAAKLIANDLTN  287 (290)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999987


No 23 
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Probab=100.00  E-value=8.1e-35  Score=230.30  Aligned_cols=210  Identities=16%  Similarity=0.025  Sum_probs=163.9

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ ++|+|+++||||++|+|+++.+++++++|+++|++++++++.....+++.+++.+|+.+|++||+.
T Consensus        20 gv~v~Dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~i~~g~l~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~   98 (265)
T 1bue_A           20 GVYALDTGSGKSF-SYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAA   98 (265)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSSCTTCEECCTTSCCCSSCHHHHHTTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCCCHHHHHH
T ss_conf             9999999999888-889998587389999999999999876189886653897576603799731226897113999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67774235899999764011178999999999987098353441------235764622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM------NAHGVVQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~------n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||.+|+++++|+.+.|    ++.++++|++++.+.      ++.+..+..|++||+|++.+..++... +.
T Consensus        99 ~mi~~SdN~Aa~~l~~~~~g~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~a~ll~~l~~~-~~  173 (265)
T 1bue_A           99 AALQYSDNGATNIILERYIGGPEGM----TKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALG-NI  173 (265)
T ss_dssp             HHHHSCCHHHHHHHHHHTTCHHHHH----HHHHHHTTCSSCBCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS-SS
T ss_pred             HHHHHCCHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CC
T ss_conf             9998566799999999844856799----999998514432124664545589899865520699999999999847-86


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHH-EEEEEEE-ECCEEEEEEEEC
Q ss_conf             110123020001--7447860145656689711533212411200-0234564-288689999837
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGF-NIVASAI-QGDQSLIAVILG  245 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~-~lv~~a~-~~g~~li~Vvlg  245 (336)
                      +....+.....+  +.....+.++......+.+|.|||+++.+|. +.++.+. .+|+++|+|||.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiiaV~~  239 (265)
T 1bue_A          174 LSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYT  239 (265)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf             788899999999834755655322347888768997557777773689999985999889999994


No 24 
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=100.00  E-value=1e-33  Score=223.54  Aligned_cols=230  Identities=16%  Similarity=0.023  Sum_probs=172.0

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ +.|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|..+|++||+.
T Consensus        22 gv~v~d~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~i~~~~~~~~~~~~~~~~~~g~~~s~~~ll~  100 (271)
T 1hzo_A           22 GVALINTEDNSQI-TYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAELSA  100 (271)
T ss_dssp             EEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHSTTGGGCEECCCGGGCCSCCTTGGGCTTTCEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9999989999989-988997072388999999999999745389887855997599962578753346898510999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC------CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67774235899999764011178999999999987098353441235------764622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH------GVVQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~------Gl~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||++|+++++|.+     .||+.++++|+.++.+.+..      +..+..|.|||+|++.+..++....+ 
T Consensus       101 ~mi~~SdN~Aa~~L~~~~gg~~-----~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tTa~d~a~ll~~l~~~~~-  174 (271)
T 1hzo_A          101 ATLQYSDNTAMNKILDYLGGPA-----KVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTTSPIAMAKSLQALTLGDA-  174 (271)
T ss_dssp             HHHHTCCHHHHHHHHHHHTSHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS-
T ss_pred             HHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf             9998544499999999836907-----8999999936343314677654556789987674389999999999973886-


Q ss_pred             HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC---CHH---HHHH
Q ss_conf             110123020001--744786014565668971153321241120002345642-8868999983789---866---7899
Q gi|254780435|r  184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL---DRN---TRNK  254 (336)
Q Consensus       184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~---~~~---~r~~  254 (336)
                      +.......-..+  ......+.++.........|.|||+++.+++|.++.+.. +|+++|+||+...   +..   ....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~yiv~v~~~~~~~~~~~~~~~i~  254 (271)
T 1hzo_A          175 LGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDIIA  254 (271)
T ss_dssp             SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf             56678999999982776366333345786159999827877774799999993899989999995799999799999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999851
Q gi|254780435|r  255 VSASLLSMGFYN  266 (336)
Q Consensus       255 ~~~~Ll~~~f~~  266 (336)
                      +..+++--.|.+
T Consensus       255 ~ia~~v~~~~~~  266 (271)
T 1hzo_A          255 KAAEIVTKEISN  266 (271)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999985


No 25 
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A
Probab=100.00  E-value=2e-32  Score=215.73  Aligned_cols=238  Identities=16%  Similarity=0.021  Sum_probs=178.0

Q ss_pred             CCCCEEE-EEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             4785689-999789629776439983075269899999999851357777876603517877200366443451012346
Q gi|254780435|r   26 NKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL  104 (336)
Q Consensus        26 ~~a~~~i-~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv  104 (336)
                      ..++.++ ++|.+||+++ +.|+|+++||||++|+|+++.+++++++|+++|++.+++.......+++.+++.+|+.+++
T Consensus        19 ~~~~~gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~a~l~~~~~g~l~~~~~~~~~~~~~~~~s~~~~~~~g~~~t~   97 (271)
T 1g6a_A           19 LSARIGVSVLDTQNGEYW-DYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITL   97 (271)
T ss_dssp             TTCEEEEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCGGGCCSSCTTGGGCTTSEEEH
T ss_pred             CCCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEH
T ss_conf             598299999989999888-9899974842899999999999999863998867527864899605998401268972469


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHH
Q ss_conf             777676777423589999976401117899999999998709835344123576------46222256999999989876
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIK  178 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~  178 (336)
                      +||+.+|++.|+|+|+.+|+++++|     .+.+|+.++++|++++++.+..+.      .+..+++|++|++.+...+.
T Consensus        98 ~~ll~~~l~~SdN~A~~~L~~~lg~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~l~  172 (271)
T 1g6a_A           98 DDACFATMTTSDNTAANIILSAVGG-----PKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKAIASTLNKFL  172 (271)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCC-----CHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999887744837999999998479-----54899999983744332267776555788997333406999999999998


Q ss_pred             HHHHHHHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECC-EEEEEEEEC---CCCHHHH
Q ss_conf             31233110123020001--74478601456566897115332124112000234564288-689999837---8986678
Q gi|254780435|r  179 TDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILG---ALDRNTR  252 (336)
Q Consensus       179 ~~~p~~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g-~~li~Vvlg---~~~~~~r  252 (336)
                      ...+ +.+.....-..+  ......+..+......+..|.|||+++.+++|.++.+..++ ++++++|+-   ..+...+
T Consensus       173 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~~~giv~~~~~~~yviaV~~~~~~~~~~~~  251 (271)
T 1g6a_A          173 FGSA-LSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLAQTQASMEER  251 (271)
T ss_dssp             HSSS-SCHHHHHHHHHHHHTCSSCTTTGGGGCCTTCEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEESCCCCHHHH
T ss_pred             HCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHH
T ss_conf             3774-336789999999852610665443447888759998241588877899999968998899999936999998999


Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             999999999998514532
Q gi|254780435|r  253 NKVSASLLSMGFYNKTDR  270 (336)
Q Consensus       253 ~~~~~~Ll~~~f~~f~~~  270 (336)
                      .+-...+-...|+.|..+
T Consensus       252 ~~~i~~is~~i~~~~~~~  269 (271)
T 1g6a_A          252 NDAIVKIGHSIFDVYTSQ  269 (271)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999863


No 26 
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1
Probab=100.00  E-value=5.3e-33  Score=219.26  Aligned_cols=212  Identities=16%  Similarity=0.048  Sum_probs=166.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC----CCCCCCCCCHHHHHH
Q ss_conf             6899997896297764399830752698999999998513577778766035178772003----664434510123467
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLD  105 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~----~s~~~l~~g~~~tv~  105 (336)
                      +..++|.+||+++ ++|+|+++||||++|||+++++|++++.|+++||+++++++.....+    .+...+..|+++|++
T Consensus        19 gv~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~   97 (266)
T 1bsg_A           19 GVYAYDTGSGRTV-AYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGAPETGKPQNLANGMTVE   97 (266)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEECCCHHHHHHHTCCTTTTSHHHHHHCEEHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             9999989999889-988998052389999999999999987289986767996167722467755421010689831399


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC------CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             7767677742358999997640111789999999999870983534412357------6462222569999999898763
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------VVQHGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G------l~~~~~~tTa~Dla~l~~~~~~  179 (336)
                      |||.+|++.|+|+||++|+++++|.     +.+|+.++++|+..+++.+..+      .....|++||+|++++..++.+
T Consensus        98 ~ll~~mi~~SdN~Aa~~L~~~~g~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tta~d~a~ll~~~~~  172 (266)
T 1bsg_A           98 ELCEVSITASDNCAANLMLRELGGP-----AAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVL  172 (266)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHTST-----HHHHHHHHHTTCSSCCCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             9999999986699999999983793-----68999999960565303576665567888876662579999999999965


Q ss_pred             HHHHHHCCCCEEECCCCCEEEEECCC--CCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCCC
Q ss_conf             12331101230200017447860145--65668971153321241120002345642-88689999837898
Q gi|254780435|r  180 DFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALD  248 (336)
Q Consensus       180 ~~p~~~~~~~~~~~~~~~~~~~N~N~--ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~~  248 (336)
                      + +.+....+.....+......+.|.  .........|.|||++..+++|.++.+.. +|+++|+|||...+
T Consensus       173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~~ii~V~~~~~  243 (266)
T 1bsg_A          173 G-DALNPRDRRLLTSWLLANTTSGDRFRAGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKT  243 (266)
T ss_dssp             S-SSSCHHHHHHHHHHHHTCCSCTTTHHHHSCTTSEEEEEEEECSTTCEEEEEEEECTTSCCEEEEEEEECS
T ss_pred             C-CCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCC
T ss_conf             8-7348889999999985686466534444788877998862057773579999991899889999990699


No 27 
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis}
Probab=100.00  E-value=6.9e-33  Score=218.56  Aligned_cols=212  Identities=13%  Similarity=0.000  Sum_probs=156.5

Q ss_pred             CCCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             7856-899997896297764399830752698999999998513577778766035178772003664434510123467
Q gi|254780435|r   27 KLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD  105 (336)
Q Consensus        27 ~a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~  105 (336)
                      .++. ..++|++||+++ ++|+|+++||||++|+|+++.+++...  +..||+.++++......+++...+.+|+.+|++
T Consensus        13 ~~~~gv~v~dl~tG~~~-~~n~~~~~~~AS~~Kl~~~~~~l~~~~--~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~   89 (260)
T 3lez_A           13 DVRLGVYAIDTGADKEI-SYRENERFAYTSTFKPLAVGAVLQTKS--DEELEETITYSEEDLVTYSPITEQHVDEGMTLV   89 (260)
T ss_dssp             TCEEEEEEEETTTTEEE-EESTTSEEECGGGGHHHHHHHHHHHCC--HHHHHSEECCCGGGCCSSCTTGGGCTTTCEEHH
T ss_pred             CCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEHHHCCCCCCCCCCCCCCCEEHH
T ss_conf             98699999989999888-888997073488999999999998566--688772699611011479974013689833399


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             77676777423589999976401117899999999998709835344123------576462222569999999898763
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA------HGVVQHGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~------~Gl~~~~~~tTa~Dla~l~~~~~~  179 (336)
                      |||++|++.|+|+||++|+++++|.     +.||+.++++|++++.+...      .+..+..|++||+|++.+.+++.+
T Consensus        90 dll~~mi~~SdN~Aa~~L~~~~g~~-----~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~  164 (260)
T 3lez_A           90 EIADAAIRYSDNTAGNLLLEAMGGP-----DELETILRDIGDETIEMDRYETELNEAKPGDIRDTSTAKAMATTLQQYVL  164 (260)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTTSH-----HHHHHHHHHTTCCSCBCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999988618679999999984794-----46899999805133203457654556678984344079999999999984


Q ss_pred             HHHHHHCCCCEEECCCCCEEEEECCCC--CCCCCCEEEEEEECCHHHHHEEEEEEEECCEE--EEEEEECCC
Q ss_conf             123311012302000174478601456--56689711533212411200023456428868--999983789
Q gi|254780435|r  180 DFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASAIQGDQS--LIAVILGAL  247 (336)
Q Consensus       180 ~~p~~~~~~~~~~~~~~~~~~~N~N~l--l~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~--li~Vvlg~~  247 (336)
                      . +.+.......-.........+.+.+  ........|.|||+++.+++|.++.+..+|.+  ++++|+...
T Consensus       165 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~dvgiv~~~~~~~~~iv~V~~~~  235 (260)
T 3lez_A          165 E-DVLDADRREVLTNMLINNTTGDALIRAGVPDGWTVGDKTGAGGYGTRNDIGIIWPEGDEEPIVIAIMSSR  235 (260)
T ss_dssp             S-SSSCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTTCCCEEEEEEEEC
T ss_pred             C-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC
T ss_conf             7-8788889999999874471254343344788977896105678787689999997899359999998168


No 28 
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1
Probab=100.00  E-value=7.6e-33  Score=218.28  Aligned_cols=234  Identities=11%  Similarity=0.059  Sum_probs=166.7

Q ss_pred             CCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC----CCCCCCCHHH
Q ss_conf             856-89999789629776439983075269899999999851357777876603517877200366----4434510123
Q gi|254780435|r   28 LPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTM  102 (336)
Q Consensus        28 a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s----~~~l~~g~~~  102 (336)
                      ++. ..+.|.++|+. +++|+|+++||||++|+|+++.+++++++|+++||+.|++++.....+++    ...+..|+.+
T Consensus        18 ~~~gv~v~~~~~~~~-~~~n~~~~~~~AS~~Kl~~a~~~l~~i~~g~l~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (282)
T 1e25_A           18 ATVGVAVWGPDDLEP-LLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSV   96 (282)
T ss_dssp             SEEEEEEECTTCSSC-EEESTTCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEEETTTSCCSSCCTHHHHSCSSEEEE
T ss_pred             CCEEEEEEECCCCEE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHEEECCCCEE
T ss_conf             959999998999818-9988998455489999999999999987599883100257688874168874200210799805


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHH
Q ss_conf             467776767774235899999764011178999999999987098353441235764------62222569999999898
Q gi|254780435|r  103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWR  176 (336)
Q Consensus       103 tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~  176 (336)
                      |++||+++|++.|+|+||.+|++.++|     .+.||+.++++|+++++|.++.|..      +.+|++||+||++|.++
T Consensus        97 t~~~Ll~~mi~~SdN~Aa~~L~~~lgg-----~~~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~Ta~d~~~ll~~  171 (282)
T 1e25_A           97 PVQQLLQYSVSHSDNVACDLLFELVGG-----PAALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWTSMKGAAEILKK  171 (282)
T ss_dssp             EHHHHHHHHHHHCCHHHHHHHHHHHTH-----HHHHHHHHHHTTCCSBCCCCCHHHHHHCTTGGGGSEECHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHCCHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             699999999995951999999998288-----468999999830343123466445565557874213319999999999


Q ss_pred             HHHHHHHHHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHE-----EEEEEE-ECCEEEEEEEECCC-
Q ss_conf             7631233110123020001--74478601456566897115332124112000-----234564-28868999983789-
Q gi|254780435|r  177 IKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN-----IVASAI-QGDQSLIAVILGAL-  247 (336)
Q Consensus       177 ~~~~~p~~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~-----lv~~a~-~~g~~li~Vvlg~~-  247 (336)
                      +..+ +.+..........+  ........++.........+.|||+....|..     .++.+. .+|++++++|+... 
T Consensus       172 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ktG~~~~~gg~~g~~~d~giv~~~~g~~~iiaV~~~~~  250 (282)
T 1e25_A          172 FEQK-TQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDS  250 (282)
T ss_dssp             HHTT-CSSCHHHHHHHHHHHHSCCSCTTSTTTTSCTTCCEEEEEEECCEETTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             HHHC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCC
T ss_conf             9848-866888999999998548644433123488887543214764546875348998999986999989999994599


Q ss_pred             --CHHHHH----HHHHHHHHHHHHHCC
Q ss_conf             --866789----999999999985145
Q gi|254780435|r  248 --DRNTRN----KVSASLLSMGFYNKT  268 (336)
Q Consensus       248 --~~~~r~----~~~~~Ll~~~f~~f~  268 (336)
                        +...+.    +-++.+++|.++...
T Consensus       251 ~~~~~~~~~~i~~i~~~~~~~~~~~~~  277 (282)
T 1e25_A          251 AESSRTNEAIIAQVAQTAYQFELKKLS  277 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             889889999999999999998865035


No 29 
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583}
Probab=100.00  E-value=9.2e-32  Score=211.70  Aligned_cols=219  Identities=14%  Similarity=0.079  Sum_probs=164.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC-CCCCCCCHHHHHHHHH
Q ss_conf             689999789629776439983075269899999999851357777876603517877200366-4434510123467776
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-NSTFKKGSTMTLDNAL  108 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s-~~~l~~g~~~tv~dll  108 (336)
                      +..++|.+||++ ++.|+|+++||||++|+|+++.+++++++|+++||++|++++.....+++ .+.+.+|+.+|++||+
T Consensus        53 ~v~~~dl~tg~~-~~~n~~~~~~~AS~~Kl~~~~~~l~~v~~G~l~l~~~v~~~~~~~~~~~~~~~~~~~g~~~sl~dLl  131 (282)
T 3cjm_A           53 GISYLDLETGEQ-RSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQ  131 (282)
T ss_dssp             EEEEEETTTCCE-EEESTTCCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCHHHHCCCSSCSGGGSCCSEEEHHHHH
T ss_pred             EEEEEECCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCCCEEECCCCEEEHHHHH
T ss_conf             999998999988-8888998422188899999999999997499887772686189961589862572589826699999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHH
Q ss_conf             7677742358999997640111789999999999870983534412357646222256999999989876312---3311
Q gi|254780435|r  109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQYM  185 (336)
Q Consensus       109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~---p~~~  185 (336)
                      ++||+.|+|+||++|++++||+..     +|++..++|+.++.+.       ..|.+|++|++.+..++..+.   |...
T Consensus       132 ~~mi~~SdN~Aan~L~~~lGg~~~-----~~~~~~~~g~~~~~~~-------~~~~~T~~d~~~ll~~l~~~~~~~~~~~  199 (282)
T 3cjm_A          132 EYAITYSDNIAKNMLYDTLGGDAK-----AKREMYQRYLHKTPSI-------EEPQFSSEDALVILQKLYTEKATKPDYQ  199 (282)
T ss_dssp             HHHHHTCCHHHHHHHHHHTTCHHH-----HHHHHHHHHTSCCCCS-------SSCEECHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHCCCHH-----HHHHHHHCCCCCCCCC-------CCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             999984126999999998298499-----9999997057668875-------5677789999999999974877886899


Q ss_pred             CCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHH-----HHHHHH
Q ss_conf             0123020001744786014565-6689711533212411200023456428868999983789866789-----999999
Q gi|254780435|r  186 HYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-----KVSASL  259 (336)
Q Consensus       186 ~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~-----~~~~~L  259 (336)
                      .+...     -..... .+++- +-.++..+.|||+++.+ +|.++....++ ++|+|||.....+.+.     +-++.+
T Consensus       200 ~l~~~-----l~~~~~-~~~l~~~lp~~~va~KtG~~~~~-~~d~giV~~~~-~yiiav~t~~~~~~~~~~~i~~is~~i  271 (282)
T 3cjm_A          200 AIYDS-----MKQSVF-HERMETPTTQGKVAHKIGSYDEF-IHDMGILETPH-PFALAIFTKGPDNAKSAAFIASVTDKL  271 (282)
T ss_dssp             HHHHH-----HHSCSC-CCTTCCTTTTTSEEEEEEEETTE-EEEEEEECSSS-CEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHCCCC-CCCHHCCCCCCCEEEEECCCCCC-EEEEEEEECCC-CEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             99999-----844778-73110258878068620265770-47899995799-889999947998078999999999999


Q ss_pred             HHHHHHHCCC
Q ss_conf             9999851453
Q gi|254780435|r  260 LSMGFYNKTD  269 (336)
Q Consensus       260 l~~~f~~f~~  269 (336)
                      ++|.+++|+.
T Consensus       272 y~~~~~~~~~  281 (282)
T 3cjm_A          272 WQLQVSEYPN  281 (282)
T ss_dssp             HHHHHHSCCC
T ss_pred             HHHHHHCCCC
T ss_conf             9977642799


No 30 
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Probab=99.97  E-value=7.8e-31  Score=206.02  Aligned_cols=232  Identities=14%  Similarity=0.039  Sum_probs=165.1

Q ss_pred             CCCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             4785-689999789629776439983075269899999999851357777876603517877200366443451012346
Q gi|254780435|r   26 NKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL  104 (336)
Q Consensus        26 ~~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv  104 (336)
                      ..++ +..++|++||+++ ++|+|+++||||++|+|+++.++++++.|+  ||+.++++......+++.....+|+.+++
T Consensus        11 ~~~~~gv~~~d~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~g~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T 1ghp_A           11 YNAHIGVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITL   87 (258)
T ss_dssp             TTCEEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHSCGGG--GGCEEEECGGGCCSSCTTGGGGTTEEEEH
T ss_pred             CCCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEHHHHCCCCCCEEECCCCCEEH
T ss_conf             098699999989999889-988997184689999999999999745689--98438974665227997423248982209


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC-------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             77767677742358999997640111789999999999870983534412-------35764622225699999998987
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-------AHGVVQHGHYTTARDMAILSWRI  177 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n-------~~Gl~~~~~~tTa~Dla~l~~~~  177 (336)
                      +|++++|++.|+|+||.+|+++++|.     +.||..++++|+.+|++.+       +.+ .+..|.+||+|++.+.+++
T Consensus        88 ~~ll~~mi~~SdN~aa~~l~~~l~~~-----~~~~~~~~~~~~~~t~l~~~~~~~~~~~~-~~~~~~tTa~d~a~ll~~l  161 (258)
T 1ghp_A           88 KALIEASMTYSDNTANNKIIKEIGGI-----KKVKQRLKELGDKVTNPVRYDIELQYYSP-KSKKDTSTPAAFGKTLNKL  161 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHTCH-----HHHHHHHHHTTCCSCBCCSCTTGGGCCCT-TCCTTEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCC-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             99999998616599999999981893-----78899999626143224776675568889-9855654899999999999


Q ss_pred             HHHHHHHHCCCCEEECCCCCEEEE--ECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEECCE--EEEEEEEC-CCC--H
Q ss_conf             631233110123020001744786--014565668971153321241120-002345642886--89999837-898--6
Q gi|254780435|r  178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQGDQ--SLIAVILG-ALD--R  249 (336)
Q Consensus       178 ~~~~p~~~~~~~~~~~~~~~~~~~--N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~g~--~li~Vvlg-~~~--~  249 (336)
                      ....+ +.+..+.....+-.....  +.++.........+.|||+++.+| ++.++.+...++  +++++|+. .++  .
T Consensus       162 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~~~vi~V~~~~~~~~~  240 (258)
T 1ghp_A          162 IANGK-LSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSD  240 (258)
T ss_dssp             TTSSS-SCHHHHHHHHHHHHHCGGGTTTHHHHSCTTSEEEEEEEECSSTTCEEEEEEEECTTCCSCEEEEEEEECSSTTC
T ss_pred             HHCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCH
T ss_conf             74886-42688999999985482140123434798875887774887765278999999899974899999917998686


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             678999999999998514
Q gi|254780435|r  250 NTRNKVSASLLSMGFYNK  267 (336)
Q Consensus       250 ~~r~~~~~~Ll~~~f~~f  267 (336)
                      ..|..-...+-...|+.|
T Consensus       241 ~~~~~li~~is~~~~~~f  258 (258)
T 1ghp_A          241 KPNDKLISETAKSVMKEF  258 (258)
T ss_dssp             CCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999739


No 31 
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=99.96  E-value=6.6e-29  Score=194.29  Aligned_cols=191  Identities=15%  Similarity=0.090  Sum_probs=147.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68999978962977643998307526989999999985135777787660351787720036644345101234677767
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK  109 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~  109 (336)
                      +..++|.+||+++ +.|+|+++||||++|+|+++.++++++.|+  ||+.++++++....+++.+...+|+.+|++||+.
T Consensus        61 gv~~~D~~tG~~~-~~n~d~~~~~ASt~Kl~~a~~~l~~v~~g~--ld~~v~i~~~~~~~~~~~~~~~~g~~~tl~dll~  137 (266)
T 1alq_A           61 GVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIE  137 (266)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHSSCGGG--TTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH
T ss_conf             9999999999888-888998353478999999999999720478--7751675388863369731046897235999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67774235899999764011178999999999987098353441235764------622225699999998987631233
Q gi|254780435|r  110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +|++.|+|+||++|++++||     .+.||++++++|+++|++.+..+..      +..|++||+||+++.+++... +.
T Consensus       138 ~mi~~SdN~Aa~~L~~~lGg-----~~~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~~-~~  211 (266)
T 1alq_A          138 ASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN-GK  211 (266)
T ss_dssp             HHHHHCCHHHHHHHHHHHTC-----HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTS-SS
T ss_pred             HHHHCCHHHHHHHHHHHHCC-----CHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CC
T ss_conf             87754879999999999776-----1689999997473227626777655567778744444999999999999857-87


Q ss_pred             HHCCCCEEECCCCCEEEEECCCCCCC-C-C-CEEEEEEECCHHHH-HEEEE
Q ss_conf             11012302000174478601456566-8-9-71153321241120-00234
Q gi|254780435|r  184 YMHYFQIKGLEIKGKKYPNTNWAVGT-F-L-GADGMKTGFTCASG-FNIVA  230 (336)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~N~N~ll~~-~-~-gv~G~KTG~t~~AG-~~lv~  230 (336)
                      +..-....-..+- ....+.|.+|.. . + ...|.|||++...| +|-++
T Consensus       212 ls~~~~~~l~~~m-~~~~~~~~~l~~~lP~~~~Va~KTGt~~~~G~~~D~a  261 (266)
T 1alq_A          212 LSKENKKFLLDLM-LNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVA  261 (266)
T ss_dssp             CCHHHHHHHHHHH-HTCGGGTTTHHHHSCTTCEEEEEEEECSSTTCEEEEE
T ss_pred             CCHHHHHHHHHHH-HCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             8999999999999-6396443005543999988999650577677621599


No 32 
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}
Probab=99.91  E-value=4.8e-23  Score=158.57  Aligned_cols=208  Identities=16%  Similarity=0.075  Sum_probs=147.4

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC--CCCCCCCHHHHHHH
Q ss_conf             5689999789629776439983075269899999999851357777876603517877200366--44345101234677
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS--NSTFKKGSTMTLDN  106 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s--~~~l~~g~~~tv~d  106 (336)
                      -+.+|+|.+||++| ..|+|+++||||++|+||++.+|+.+++|++++|+.|..+.......++  ......|..+++.+
T Consensus        22 ~~~~V~D~~tG~~l-a~n~d~~~~pgSt~K~~ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~~  100 (318)
T 2wuq_A           22 GSFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSRFRHPARVAVDD  100 (318)
T ss_dssp             EEEEEEETTTCCEE-EESTTCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCGGGGCSSCEEEEHHH
T ss_pred             EEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99999999899889-98899737379799999999999876549978754566403531379974013578887403999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC---------------------------
Q ss_conf             76767774235899999764011178999999999987098353441235764---------------------------
Q gi|254780435|r  107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------------------  159 (336)
Q Consensus       107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~---------------------------  159 (336)
                      ++..++..|.|+++..|++.++      .+.++..++++|+.++.+.+.-+..                           
T Consensus       101 ~~~~~~~~S~n~a~~~l~~~~g------~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (318)
T 2wuq_A          101 LLYLSTSVSDGTASDALFEITP------PAQVEQMVREWGFRDLTVRHSMRELSETPAERFESADAHLAHALAISAGTSG  174 (318)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHSC------HHHHHHHHHHTTCCSCCCCCCTTC----------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHCC------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHH
T ss_conf             9999998277226677887529------9987547887088764465666545666555555202456664236565767


Q ss_pred             ----------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE-E-CCCCC----EE--EE--ECCCCC---CCCCCEEEE
Q ss_conf             ----------62222569999999898763123311012302-0-00174----47--86--014565---668971153
Q gi|254780435|r  160 ----------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-G-LEIKG----KK--YP--NTNWAV---GTFLGADGM  216 (336)
Q Consensus       160 ----------~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~-~-~~~~~----~~--~~--N~N~ll---~~~~gv~G~  216 (336)
                                +.++.+|++|++.+..++..... ........ . .....    +.  ..  +...+.   .......+.
T Consensus       175 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~g~~~~~~~~~g~~vag  253 (318)
T 2wuq_A          175 RGHRVPQLDVARANTGTARAFVDLLEALWAPVL-TGPRPGRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWSS  253 (318)
T ss_dssp             --CCSGGGCTTTSCEECHHHHHHHHHHHHGGGC-CCC-------CCCHHHHHHHHHHHHTCCCCSSSHHHHCBTTEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf             899999998528830348999999975025654-5566543345679999999999987346488720134789988999


Q ss_pred             EEECCHHHHHEEEEEE-EECCEEEEEEEEC
Q ss_conf             3212411200023456-4288689999837
Q gi|254780435|r  217 KTGFTCASGFNIVASA-IQGDQSLIAVILG  245 (336)
Q Consensus       217 KTG~t~~AG~~lv~~a-~~~g~~li~Vvlg  245 (336)
                      |||+++.. ++.++.+ ..||++++++|+.
T Consensus       254 KTGT~~~~-~~~~~~~~~~d~~~~~v~V~~  282 (318)
T 2wuq_A          254 KTGTLLNL-RHEVGVVEHADGQVFAVAVLT  282 (318)
T ss_dssp             EEEEETTE-EEEEEEEEETTSCEEEEEEEE
T ss_pred             EEECCCCC-CEEEEEEECCCCCEEEEEEEE
T ss_conf             80257783-166999996898949999998


No 33 
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=99.71  E-value=6.1e-15  Score=109.22  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHH
Q ss_conf             2346777676777423589999976401-------11789999999999870983--53441235764622225699999
Q gi|254780435|r  101 TMTLDNALKLLIVKSANDIAVAIAESLC-------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMA  171 (336)
Q Consensus       101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~-------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla  171 (336)
                      +-++.+++..|+-.|.|-.|..|...++       ++.+.-...|.+..+++|+.  +.++.+.+|| ...|..||++|.
T Consensus       270 S~pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGL-Sr~N~it~~~l~  348 (453)
T 3a3d_A          270 SKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGIRFGNSILADGSGL-SRHNLVAPKTML  348 (453)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTTCCCTTCBCCCSSSC-CTTCBBCHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCCCCCHHHHH
T ss_conf             7209999999984597189999999998874589860778898888899972999765255277777-734431899999


Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEE
Q ss_conf             99898763123311012302000174478601456566-897115332124112000234564-28868999983
Q gi|254780435|r  172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVIL  244 (336)
Q Consensus       172 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvl  244 (336)
                      .+..++. +.|.+..+...--+.....++.++..+... -.|-.-.|||+.+.. .||++... ++|++++.++|
T Consensus       349 ~lL~~~~-~~~~~~~~~~sLpv~G~~Gtl~~r~~~~~~~~~g~v~aKTGtL~~v-~sLaGyi~~~~G~~~~fsi~  421 (453)
T 3a3d_A          349 SVLEYIA-KNEDKLHLMETFPIAGVDGTISGRGGLISPPLVKNVIAKTGSLKGV-YNLAGFMTNARGEKVAFVQF  421 (453)
T ss_dssp             HHHHHHH-HTHHHHCCGGGSCBTTTSGGGTTCGGGSSTTTTTTCEEEEEEETTE-EEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEEEECCCCCEEEEEEE
T ss_conf             9999987-5952789997388057777545656556777668499987263784-58799999699899999999


No 34 
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=99.61  E-value=9.1e-14  Score=102.03  Aligned_cols=140  Identities=19%  Similarity=0.243  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHH
Q ss_conf             12346777676777423589999976401------11789999999999870983--53441235764622225699999
Q gi|254780435|r  100 STMTLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMA  171 (336)
Q Consensus       100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla  171 (336)
                      +.-++.++++.|+-.|.|-.|.+|...++      |+.+.-.+.|.+..+++|+.  +.++.|-||| ...|..||++|+
T Consensus       284 ~S~pL~~lv~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~l~~~gi~~~~~~l~DGSGL-Sr~Nrisp~~l~  362 (462)
T 1w5d_A          284 RSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGI-SHIDAVSSDQLS  362 (462)
T ss_dssp             ECCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHGGGGTCCGGGCBCSCSSSC-CTTCBBCHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCCHHHHH
T ss_conf             2711999999998438729999999999997379986688999999999972788665277558878-755652999999


Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCC-------EEEEECCCCCC-CCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEE
Q ss_conf             99898763123311012302000174-------47860145656-6897115332124112000234564-288689999
Q gi|254780435|r  172 ILSWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAV  242 (336)
Q Consensus       172 ~l~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~N~N~ll~-~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~V  242 (336)
                      .+..++. +.|.+..+...  +...|       .++.|  ++-. .-.|..-.|||+.+. -.||++... ++|++++.+
T Consensus       363 ~lL~~~~-~~~~~~~~~~s--LPvaG~~~~~v~GTL~~--R~~~~~~~g~v~aKTGTL~~-v~aLaGyv~t~~G~~~~Fs  436 (462)
T 1w5d_A          363 QLLYDIQ-DQSWFSAYLNS--LPVAGNPDRMVGGTLRN--RMKGTPAQGKVRAKTGSLST-VSSLSGYAETKSGKKLVFS  436 (462)
T ss_dssp             HHHHHHT-TSTTHHHHHHH--SCBTTCSSHHHHGGGTT--SSTTSTTTTTEEEEEEEETT-EEEEEEEEECSSSCEEEEE
T ss_pred             HHHHHHH-HCCCHHHHHHH--CCCCCCCCCCCCCCHHH--HCCCCCCCCEEEEEEEEECC-CEEEEEEEECCCCCEEEEE
T ss_conf             9999988-59207899972--98478878776872565--42478767749999752389-4685899998998999999


Q ss_pred             EECC
Q ss_conf             8378
Q gi|254780435|r  243 ILGA  246 (336)
Q Consensus       243 vlg~  246 (336)
                      +|-.
T Consensus       437 i~~N  440 (462)
T 1w5d_A          437 ILLN  440 (462)
T ss_dssp             EEEE
T ss_pred             EEEC
T ss_conf             9957


No 35 
>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=99.57  E-value=3e-13  Score=98.86  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHH-HHHCCC--CCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             23467776767774235899999764011-------178999999999-987098--35344123576462222569999
Q gi|254780435|r  101 TMTLDNALKLLIVKSANDIAVAIAESLCK-------TEKKFVQHMNNT-SKNLGL--SATHFMNAHGVVQHGHYTTARDM  170 (336)
Q Consensus       101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~G-------s~~~Fv~~MN~~-a~~lG~--~~T~f~n~~Gl~~~~~~tTa~Dl  170 (336)
                      +-++.++++.|+..|.|-+|.+|...+|+       +.......+.+. ..++|+  .+..+.|.+|| ...|..||++|
T Consensus       273 S~pL~~l~~~m~~~SdN~~Ae~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dgSGL-Sr~n~~t~~~~  351 (458)
T 2ex2_A          273 SAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGL-SRHNLIAPATM  351 (458)
T ss_dssp             CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTSCCCCTTCBCCCSSSC-CTTCBBCHHHH
T ss_pred             CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC-CCCCCCCHHHH
T ss_conf             77799999998535827999999999988744898726679999999999860888655243047887-65565599999


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEEC
Q ss_conf             9998987631233110123020001744786014565-66897115332124112000234564-288689999837
Q gi|254780435|r  171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG  245 (336)
Q Consensus       171 a~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg  245 (336)
                      ..+..++. ..|.+..+...--......++.++..+- ....|..-.|||+.+. -.|+++... ++|++++.++|-
T Consensus       352 ~~~L~~~~-~~~~~~~~~~~lpi~g~~Gtl~~r~~~~~~~~~g~v~aKTGtl~~-v~~laGyv~~~~g~~~~fai~~  426 (458)
T 2ex2_A          352 MQVLQYIA-QHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSLQG-VYNLAGFITTASGQRMAFVQYL  426 (458)
T ss_dssp             HHHHHHHH-HTHHHHCCGGGSCBTTTSGGGTTCHHHHHTTCTTTEEEEEEEETT-EEEEEEEEECTTSCEEEEEEEE
T ss_pred             HHHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-CEEEEEEEECCCCCEEEEEEEE
T ss_conf             99999988-496247899738824676765665555668878869995553368-6798999997998999999996


No 36 
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A*
Probab=99.52  E-value=2.8e-12  Score=92.94  Aligned_cols=135  Identities=19%  Similarity=0.154  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             46777676777423589999976401------11789999999999870983--53441235764622225699999998
Q gi|254780435|r  103 TLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMAILS  174 (336)
Q Consensus       103 tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla~l~  174 (336)
                      ++.++++.|+-.|.|-.|..|...++      |+.+.-...|.+..+++|+.  +.++.|-+|| ...|..||++|..+.
T Consensus       286 pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~~~~~~~~~l~~~gi~~~~~~l~DGSGL-Sr~nriSp~~l~~lL  364 (489)
T 1w79_A          286 ELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGL-SRGNLVTADTVVDLL  364 (489)
T ss_dssp             EHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTCCCTTCBCSCSSSC-STTCBBCHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCHHHHHHHH
T ss_conf             8999999998636659999999999997448997789999999999865898567477058878-866665999999999


Q ss_pred             HHHHHHHHHHHCCCCEEECCCCC-------EEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEEC
Q ss_conf             98763123311012302000174-------478601456566-8971153321241120002345642-88689999837
Q gi|254780435|r  175 WRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILG  245 (336)
Q Consensus       175 ~~~~~~~p~~~~~~~~~~~~~~~-------~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg  245 (336)
                      .++. +.|.+..+...  +...|       .|+.  |++... -.|..-.|||+... -.+|++.... +|+ ++.+++-
T Consensus       365 ~~~~-~~~~~~~~~~s--LPiaG~~~~~vdGTL~--~R~~~~~~~g~v~aKTGTL~~-V~sLaGyv~~~~G~-l~Fsi~~  437 (489)
T 1w79_A          365 GQAG-SAPWAQTWSAS--LPVAGESDPFVGGTLA--NRMRGTAAEGVVEAKTGTMSG-VSALSGYVPGPEGE-LAFSIVN  437 (489)
T ss_dssp             HHHH-TSTTHHHHHHH--SCBTTCSSHHHHGGGT--TSSTTSTTTTTCEEECCEETT-EEEEEEEECCTTCC-EEEEEEE
T ss_pred             HHHH-HCCCHHHHHHH--CCCCCCCCCCCCCCHH--HHCCCCCCCCEEEEEEEEECC-CEEEEEEEECCCCC-EEEEEEE
T ss_conf             9988-59317899973--8857887777787556--642478767849999850069-47838999969998-9999997


No 37 
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=99.34  E-value=9.9e-11  Score=83.55  Aligned_cols=185  Identities=11%  Similarity=0.037  Sum_probs=116.5

Q ss_pred             EEEEEECCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC-CCHHHHHHH
Q ss_conf             689999789629776--43998307526989999999985135777787660351787720036644345-101234677
Q gi|254780435|r   30 YYTLLDTNTGHVIAE--NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-KGSTMTLDN  106 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~--kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~-~g~~~tv~d  106 (336)
                      +.+++|.++|+++..  .-+.++++|||+-|++|++.+||   .|.++.++.+...      ++..-... ....+++++
T Consensus        43 ~~vi~d~~~~~~~~~~~nRA~~~~~PgSTFKi~~a~aaLe---~G~i~~~~~~~~~------~g~~~~~~~~~~~~tl~~  113 (265)
T 3hbr_A           43 VVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALD---LGVVKDEHQVFKW------DGQTRDIATWNRDHNLIT  113 (265)
T ss_dssp             EEEEEETTTTEEEESCHHHHTCEECCGGGGHHHHHHHHHH---TTSSCCTTCCBCC------CSCCCSSGGGSSCBCHHH
T ss_pred             EEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEECC------CCCCCCCCCCCCCCCHHH
T ss_conf             8999988999577506656527889973389999999998---6985997704418------995655887589989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             767677742358999997640111789999999999870983534412357646-----222256999999989876312
Q gi|254780435|r  107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDF  181 (336)
Q Consensus       107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-----~~~~tTa~Dla~l~~~~~~~~  181 (336)
                          .|..|.|.+..-|++.+|      .+.|.+.++++|..+-..   .|..+     .+...|+.+|+.+...+..+-
T Consensus       114 ----Al~~S~N~~f~~l~~~iG------~~~~~~~~~~~G~G~~~~---~~~~~~~w~~g~l~iTPlq~a~~~~~ian~~  180 (265)
T 3hbr_A          114 ----AMKYSVVPVYQEFARQIG------EARMSKMLHAFDYGNEDI---SGNVDSFWLDGGIRISATEQISFLRKLYHNK  180 (265)
T ss_dssp             ----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCTTCCC----CCTTTHHHHSSCCEEHHHHHHHHHHHHTTC
T ss_pred             ----HHHHCCHHHHHHHHHHHC------CHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEECHHHHHHHHHHHHHCC
T ss_conf             ----999708099999977729------377899999869999888---9886644037970010899999999998399


Q ss_pred             HHHHCCCCEEECCC-CCEEEEECCCCCCCCCCEEEEEEECCHHHHHE---EEEEEEECCEEEEEEEEC
Q ss_conf             33110123020001-74478601456566897115332124112000---234564288689999837
Q gi|254780435|r  182 PQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN---IVASAIQGDQSLIAVILG  245 (336)
Q Consensus       182 p~~~~~~~~~~~~~-~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~---lv~~a~~~g~~li~Vvlg  245 (336)
                      ..+..    ..... ........     ...+..++|||+....+..   +|+.+..++.+++.+|+-
T Consensus       181 ~~~s~----~~~~~v~~~m~~~~-----~~g~~vaGKTGTa~~~~~~~~WfvG~~~~~~~~~~~av~i  239 (265)
T 3hbr_A          181 LHVSE----RSQRIVKQAMLTEA-----NGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNM  239 (265)
T ss_dssp             SSSCH----HHHHHHHHHTEEEE-----CSSCEEEEEEEEECSSSSCEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCCH----HHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf             68888----99999999988633-----1580578510355468998689999998799869999997


No 38 
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=99.19  E-value=1.3e-09  Score=76.71  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=115.3

Q ss_pred             CEEEEEECCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHH
Q ss_conf             5689999789629776439---9830752698999999998513577778766035178772003664434-51012346
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENYP---DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTL  104 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn~---~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv  104 (336)
                      -+++++|..||+++. -|.   .++++|+|+-|++|++.+||   +|.++.++.+...      ++..... .....+++
T Consensus        24 G~~v~~d~~tg~~~~-~n~~~~~~~y~PGStfK~~t~~aaLe---~g~~~~~~~~~~~------~~~~~~~~~~~g~~~l   93 (246)
T 2iwb_A           24 GSFVLYNEREQAYSI-YNEPESKQRYSPNSTYKIYLALMAFD---QNLLSLNHTEQQW------DKHQYPFKEWNQDQNL   93 (246)
T ss_dssp             EEEEEEETTTTEEEE-ESHHHHTBCBCCGGGGHHHHHHHHHH---TTSSBTTBCCBCC------CCCCCSSGGGSSCBCH
T ss_pred             EEEEEEECCCCCEEE-ECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCC------CCCCCCCCCCCCCCCH
T ss_conf             469999789996760-58889668779963699999999998---4997885434169------9866178988997077


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf             7776767774235899999764011178999999999987098353441235-7646222256999999989876312--
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH-GVVQHGHYTTARDMAILSWRIKTDF--  181 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~-Gl~~~~~~tTa~Dla~l~~~~~~~~--  181 (336)
                      ++.    |..|+|.+..-|++.+|      .+.|.+.++.+|+.+.....+. ++...+-..|+.+|+.+...+...-  
T Consensus        94 ~~A----l~~S~N~~~~~la~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~iTPlqma~~~~~ian~g~~  163 (246)
T 2iwb_A           94 NSS----MKYSVNWYYENLNKHLR------QDEVKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMH  163 (246)
T ss_dssp             HHH----HHTTCHHHHHHHHTTSC------HHHHHHHHHHHTCTTCCCCSCSSTTSSSSCCBCHHHHHHHHHHHHTTCSS
T ss_pred             HHH----HHCCCHHHHHHHHHHCC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             884----22456299999998728------60789999982899998898764222687525699999999999838967


Q ss_pred             --HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH--EEEEEEEECCEEEEEEEE
Q ss_conf             --331101230200017447860145656689711533212411200--023456428868999983
Q gi|254780435|r  182 --PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF--NIVASAIQGDQSLIAVIL  244 (336)
Q Consensus       182 --p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~--~lv~~a~~~g~~li~Vvl  244 (336)
                        |+..+....      .......    ..+...-+.|||.+.....  -||+.+..++.+++++|+
T Consensus       164 ~~p~~~~~~~~------~~~~~~~----~~~~~~~ktgTg~~~~~~~~aWFvGf~p~~~p~~~~~v~  220 (246)
T 2iwb_A          164 FDNKAIEKVEN------SMTLKQK----DTYKYVGKTGTGIVNHKEANGWFVGYVETKDNTYYFATH  220 (246)
T ss_dssp             SCHHHHHHHHH------HTEEEEC----SSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE
T ss_pred             CCCHHHHHHHH------HHHHHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf             88325567777------7777654----234432110104468988788999999889995999999


No 39 
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A*
Probab=99.18  E-value=2.8e-09  Score=74.73  Aligned_cols=207  Identities=11%  Similarity=0.006  Sum_probs=122.8

Q ss_pred             CEEEEEECCCCEEEEEEC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHH
Q ss_conf             568999978962977643----99830752698999999998513577778766035178772003664434-5101234
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY----PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMT  103 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn----~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~t  103 (336)
                      -+.+++|..||++++--+    +.++++|+|+-|++|++.+||   +|.++.++.+...      ++..... .....++
T Consensus        21 G~~vv~D~~tg~~~a~~~n~~~a~~~y~PGSTfK~~~~~aaLe---~G~i~~~~~~~~~------~~~~~~~~~~~g~~t   91 (254)
T 1k38_A           21 GTIVVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALD---AGAVRDEFQIFRW------DGVNRGFAGHNQDQD   91 (254)
T ss_dssp             EEEEEEECSSSSCCCEEESHHHHTCCBCCGGGGHHHHHHHHHH---HTSCCSTTCCBCC------CSCCCSCTTTSSCBC
T ss_pred             EEEEEEECCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCC------CCCCCCCCCCCCCCC
T ss_conf             8999998999857886149899668889972899999999998---4985432113468------987678888899979


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67776767774235899999764011178999999999987098353441235764--6222256999999989876312
Q gi|254780435|r  104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDF  181 (336)
Q Consensus       104 v~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--~~~~~tTa~Dla~l~~~~~~~~  181 (336)
                      +++.    |..|.|-...-|++.+|      .+.|.+.++.+|+.+.......+..  ..+-..|+.+|+.+...+..+-
T Consensus        92 l~~A----l~~S~N~~f~~la~~lG------~~~~~~~~~~~G~G~~~~~~~~~~~~~~g~~~itPlq~a~~~~~ian~g  161 (254)
T 1k38_A           92 LRSA----MRNSTVWVYELFAKEIG------DDKARRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRNE  161 (254)
T ss_dssp             HHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCC--CCTTTTSSCCBCHHHHHHHHHHHHTTC
T ss_pred             HHHH----HHHCCHHHHHHHHHHHC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999----99739399999999819------0889999998599999887653440017874375999999999997699


Q ss_pred             ----HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEE-CCCCHHHHHHHH
Q ss_conf             ----331101230200017447860145656689711533212411200023456428868999983-789866789999
Q gi|254780435|r  182 ----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVS  256 (336)
Q Consensus       182 ----p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvl-g~~~~~~r~~~~  256 (336)
                          |...+....    . -+.-.       ...+..++|||++...|+ ||+.+..++.++..+|+ ..+....-..-.
T Consensus       162 ~~~~~~~~~~~~~----~-~~~~~-------~~g~~vaGKTGTa~~~~W-FvG~~p~~~p~~~~av~i~~~~~~~~~~~a  228 (254)
T 1k38_A          162 LPFRVEHQRLVKD----L-MIVEA-------GRNWILRAKTGWEGRMGW-WVGWVEWPTGSVFFALNIDTPNRMDDLFKR  228 (254)
T ss_dssp             SSSCHHHHHHHHH----H-TEEEE-------ETTEEEEEEEEESSSEEE-EEEEEEETTEEEEEEEEEECTTGGGGTHHH
T ss_pred             EECCHHHHHHHHH----H-HHHHH-------HCCCEEEEEECCCCCCEE-EEEEEECCCCEEEEEEEEECCCCCCCHHHH
T ss_conf             4058006799999----9-98834-------259757776368986768-999998699869999999779997728999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999998514
Q gi|254780435|r  257 ASLLSMGFYNK  267 (336)
Q Consensus       257 ~~Ll~~~f~~f  267 (336)
                      ..+....|+..
T Consensus       229 ~~i~~~il~~l  239 (254)
T 1k38_A          229 EAIVRAILRSI  239 (254)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999984


No 40 
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=99.18  E-value=1.3e-09  Score=76.75  Aligned_cols=183  Identities=9%  Similarity=0.042  Sum_probs=116.9

Q ss_pred             EEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHHH
Q ss_conf             68999978962977643---99830752698999999998513577778766035178772003664434-510123467
Q gi|254780435|r   30 YYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTLD  105 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv~  105 (336)
                      +.+++|.+||+++. -|   +.++++|+|+-|++|+..+||   .|.++.++.+...      ++..... .....+++ 
T Consensus        36 ~~vv~d~~tg~~~~-~n~n~~~~~~~PGSTfK~~~~~aaLe---~g~~~~~~~~~~~------~~~~~~~~~~~g~~~l-  104 (262)
T 1nrf_A           36 GFVLFNSNRKKYTI-YNRKESTSRFAPASTYKVFSALLALE---SGIITKNDSHMTW------DGTQYPYKEWNQDQDL-  104 (262)
T ss_dssp             EEEEEETTTTEEEE-ECHHHHHSCBCCGGGGHHHHHHHHHH---HTSSCSSCCCBCC------CCCCCSSTTTSSCBCH-
T ss_pred             EEEEEECCCCCEEE-ECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEECC------CCCCCCCCCCCCCCCH-
T ss_conf             89999899997863-19899757789975289999999998---5999998745659------9850367888999799-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHH---
Q ss_conf             7767677742358999997640111789999999999870983534412357-646222256999999989876312---
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-VVQHGHYTTARDMAILSWRIKTDF---  181 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G-l~~~~~~tTa~Dla~l~~~~~~~~---  181 (336)
                         ...+..|.|-++.-|+..+|      .+.|.+.++.+|+.+.....|.. +.......|+..|+.+...+..+-   
T Consensus       105 ---~~Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G~~~  175 (262)
T 1nrf_A          105 ---FSAMSSSTTWYFQKLDRQIG------EDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDF  175 (262)
T ss_dssp             ---HHHHHHTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTTTCC
T ss_pred             ---HHHHHHCCCHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             ---99999757098852324258------578999999839999888986378747975523999999999995468877


Q ss_pred             -HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH----EEEEEEEECCEEEEEEEE
Q ss_conf             -331101230200017447860145656689711533212411200----023456428868999983
Q gi|254780435|r  182 -PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF----NIVASAIQGDQSLIAVIL  244 (336)
Q Consensus       182 -p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~----~lv~~a~~~g~~li~Vvl  244 (336)
                       |++.+....     ..+       ......+..++|||+....|.    -+|+.+..++.+++++|+
T Consensus       176 ~p~~~~~~~~-----~~~-------~~~~~~~~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~  231 (262)
T 1nrf_A          176 KQSNIETVKD-----SIR-------LEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVH  231 (262)
T ss_dssp             CHHHHHHHHH-----HHE-------EEEETTEEEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CHHHHHHHHH-----HHH-------HHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf             8899999987-----876-------6544123356640254368998628999999879985999999


No 41 
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes}
Probab=99.07  E-value=1.8e-08  Score=69.82  Aligned_cols=137  Identities=13%  Similarity=0.036  Sum_probs=83.9

Q ss_pred             CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH
Q ss_conf             7896297764------------3998307526989999999985135777787660351787720036644345101234
Q gi|254780435|r   36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT  103 (336)
Q Consensus        36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t  103 (336)
                      ..-|+++++.            +.|.++++||+||.+|+.+++..+++|+++||++|.-.  .....     ....+.+|
T Consensus        34 ~~~g~~~~~~~G~~d~~~~~~~t~~t~f~iaSiSK~~ta~~i~~lve~G~l~ldd~v~~y--lP~~~-----~~~~~~IT  106 (359)
T 1zkj_A           34 LKDGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASRH--APWLK-----GSAFDSIT  106 (359)
T ss_dssp             EETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGG--CGGGT-----TSGGGSSB
T ss_pred             EECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC-----CCCCCCEE
T ss_conf             999999998562021566998999998963237999999999999976997743322234--77654-----44456520


Q ss_pred             HHHHHHH---------------------HHHH-----------H-HHHHHHHHHHHHC-CCHHHHHHHHHH-HHHHCCCC
Q ss_conf             6777676---------------------7774-----------2-3589999976401-117899999999-99870983
Q gi|254780435|r  104 LDNALKL---------------------LIVK-----------S-ANDIAVAIAESLC-KTEKKFVQHMNN-TSKNLGLS  148 (336)
Q Consensus       104 v~dll~~---------------------~li~-----------S-~Ndaa~aLAe~i~-Gs~~~Fv~~MN~-~a~~lG~~  148 (336)
                      +++||.-                     .+..           . +|-.-..|++-+. -+-+.|-+.|++ -.+-|||+
T Consensus       107 i~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~lLg~iie~~tg~~~~~~l~~~i~~Plgm~  186 (359)
T 1zkj_A          107 MGELATYSAGGLPLQFPEEVDSSEKMRAYYRQWAPVYSPGSHRQYSNPSIGLFGHLAASSLKQPFAPLMEQTLLPGLGMH  186 (359)
T ss_dssp             HHHHHTTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHTTCS
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf             56554232499865676556768999999963887679894333066588999999998609988999999975425996


Q ss_pred             CCEEECCCCCC------------------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             53441235764------------------------62222569999999898763
Q gi|254780435|r  149 ATHFMNAHGVV------------------------QHGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       149 ~T~f~n~~Gl~------------------------~~~~~tTa~Dla~l~~~~~~  179 (336)
                      +|.|..+.-..                        ..+-++|++||++..+.++.
T Consensus       187 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~  241 (359)
T 1zkj_A          187 HTYVNVPKQAMASYAYGYSKEDKPIRVNPGMLADEAYGIKTSSADLLRFVKANIG  241 (359)
T ss_dssp             SCBSSCCGGGGGGBCCEECTTCCEECCCCCTTHHHHHCCEECHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             7576898366055010223679714526876677777601789999999999736


No 42 
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ...
Probab=99.06  E-value=2.2e-08  Score=69.29  Aligned_cols=135  Identities=19%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             CCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             896297764------------39983075269899999999851357777876603517877200366443451012346
Q gi|254780435|r   37 NTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL  104 (336)
Q Consensus        37 ~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv  104 (336)
                      ..|++++..            +.|..+++||+||.+|+.+++..+++|+++||++|.  +.....     .....+.+|+
T Consensus        31 ~~g~~~~~~~G~~~~~~~~~~t~~T~f~iaS~tK~~ta~~i~~lve~G~l~ld~pv~--~ylp~~-----~~~~~~~ITl  103 (358)
T 2ffy_A           31 YQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTT--KYWPEL-----TAKQWNGITL  103 (358)
T ss_dssp             ETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHCTTC-----CSGGGTTCBH
T ss_pred             ECCEEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHCCCC-----CCCCCCCCHH
T ss_conf             999999983864036669889999979632268999999999999769999878645--548543-----3343332329


Q ss_pred             HHHHH----------------------HHHHHH-----------HHHHHHHHHHH---HCCCHHHHHHHHHHH-HHHCCC
Q ss_conf             77767----------------------677742-----------35899999764---011178999999999-987098
Q gi|254780435|r  105 DNALK----------------------LLIVKS-----------ANDIAVAIAES---LCKTEKKFVQHMNNT-SKNLGL  147 (336)
Q Consensus       105 ~dll~----------------------~~li~S-----------~Ndaa~aLAe~---i~Gs~~~Fv~~MN~~-a~~lG~  147 (336)
                      ++||.                      .+.-..           +|-.-..|++-   +.|  ..|-+.+.++ .+-|||
T Consensus       104 r~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~lLg~iie~vtg--~~~~~~~~e~i~~PLgm  181 (358)
T 2ffy_A          104 LHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSG--LSFEQAMQTRVFQPLKL  181 (358)
T ss_dssp             HHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHTGGGT--SCHHHHHHHHTTTTTTC
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCC
T ss_conf             8873678799855565310006999998850887679993467550278898877763248--96777689986354698


Q ss_pred             CCCEEECCCCC-----------------------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             35344123576-----------------------4622225699999998987631
Q gi|254780435|r  148 SATHFMNAHGV-----------------------VQHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       148 ~~T~f~n~~Gl-----------------------~~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      ++|.|.-+.-.                       +..+-++|++||++..+.++..
T Consensus       182 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~D~ak~~~~~l~~  237 (358)
T 2ffy_A          182 NHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKP  237 (358)
T ss_dssp             TTCBSSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCG
T ss_pred             CCCCCCCCHHHHCCEEEEEECCCCEECCCCCCCCCCCCEECCHHHHHHHHHHHHCC
T ss_conf             65676798355056244321697031146534567774115899999999998489


No 43 
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A*
Probab=99.04  E-value=3.3e-08  Score=68.18  Aligned_cols=135  Identities=17%  Similarity=0.089  Sum_probs=83.7

Q ss_pred             CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH
Q ss_conf             7896297764------------3998307526989999999985135777787660351787720036644345101234
Q gi|254780435|r   36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT  103 (336)
Q Consensus        36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t  103 (336)
                      ...|++++..            +.|.++.+||+||.+|+++++..+++|+++||++|.-  .......     ...+.+|
T Consensus        33 ~~~g~~~~~~~G~~~~~~~~p~t~dT~f~iaSvTK~~ta~~i~~lve~G~l~lddpv~~--ylp~~~~-----~~~~~iT  105 (371)
T 2wzx_A           33 SLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQ--HWPALQG-----SRFDGIS  105 (371)
T ss_dssp             EETTEEEEEEEEBSCTTTCCBCCTTCEEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--GCGGGTT-----SGGGGCB
T ss_pred             EECCEEEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCC-----CCCCCCH
T ss_conf             99999999848750056698899999796304689999999999998699777786223--5873101-----4656204


Q ss_pred             HHHHHHHH-----------------------H------------HHHHHHHHHHHH---HHHCCCHHHHHHHHHHH-HHH
Q ss_conf             67776767-----------------------7------------742358999997---64011178999999999-987
Q gi|254780435|r  104 LDNALKLL-----------------------I------------VKSANDIAVAIA---ESLCKTEKKFVQHMNNT-SKN  144 (336)
Q Consensus       104 v~dll~~~-----------------------l------------i~S~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~  144 (336)
                      +++||.-.                       .            ..| |-.-..|+   |.+.|  +.|-+.|+++ .+-
T Consensus       106 i~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ys-n~~y~llg~iie~vtg--~~~~~~~~~~i~~P  182 (371)
T 2wzx_A          106 LLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYS-NPSIGLFGYLAARSLG--QPFERLMEQQVFPA  182 (371)
T ss_dssp             HHHHHTTCSSCCCSSCCTTCCSCHHHHHHHHHHCCCSSCTTSEECCC-HHHHHHHHHHHHHHHT--SCHHHHHHHTHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEC-CCHHHHHHHHHHHHCC--CCHHHHHHHHHCCC
T ss_conf             99885225799765566413456999999997478767999534434-6062898899998729--97777548875055


Q ss_pred             CCCCCCEEECCCCCC------------------------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             098353441235764------------------------622225699999998987631
Q gi|254780435|r  145 LGLSATHFMNAHGVV------------------------QHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       145 lG~~~T~f~n~~Gl~------------------------~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      |||++|.|.-+....                        ..+-++|++||++..+.++..
T Consensus       183 Lgm~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~~  242 (371)
T 2wzx_A          183 LGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHP  242 (371)
T ss_dssp             TTCSSEESSCCGGGGGGBCCCBCGGGCBCCCCCCTTHHHHHCCEEEHHHHHHHHHHHHCG
T ss_pred             CCCCCCCCCCCHHHHCCCEEEECCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHCC
T ss_conf             688665168974663252123304898434068766667560011799999999998389


No 44 
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis}
Probab=99.04  E-value=3.2e-09  Score=74.38  Aligned_cols=140  Identities=15%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE-----ECHHHHHCCC-----CCCCCCC
Q ss_conf             56899997896297764399830752698999999998513577778766035-----1787720036-----6443451
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-----ISKNASEYPP-----SNSTFKK   98 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~-----vs~~~~~~~~-----s~~~l~~   98 (336)
                      ..+.|+ ...|.+...-+.|.++++||+||.+|+.+++..+++|+++||+++.     +-.-.....|     .....+|
T Consensus        15 ~~~~v~-~~~~~~~~~gd~dt~f~iaS~tK~~ta~~i~~lve~G~l~Ld~pv~~~~iTlr~LLthtsGl~~~~~~~~~~P   93 (280)
T 3i7j_A           15 AAAAVI-GPAGVLATHGDTARVFALASVTKPLVARAAQVAVEEGVVNLDTPAGPPGSTVRHLLAHTSGLAMHSDQALARP   93 (280)
T ss_dssp             EEEEEE-ETTEEEEEESCTTSCEECGGGHHHHHHHHHHHHHHHTSSCTTSBCSSTTCBHHHHHTTCSCBCSSSSCBCSCT
T ss_pred             CCEEEE-CCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             644898-3997881138998889876059999999999999869988999788789879999548688875667621498


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             0123467776767774235899999764011178999999999-987098353441235764622225699999998987
Q gi|254780435|r   99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI  177 (336)
Q Consensus        99 g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~  177 (336)
                      |+++.-.++=+.++       . .+.|.+.|  +.|-+.|+++ .+-|||++|.|.........+-++|++|++++++.+
T Consensus        94 Gt~~~Ysn~~~~lL-------g-~ile~vtG--~~~~~~~~e~I~~PLGm~~t~~~~~p~~~~~G~~st~~D~~~~~~~l  163 (280)
T 3i7j_A           94 GTRRMYSNYGFTVL-------A-ESVQRESG--IEFGRYLTEAVCEPLGMVTTRLDGGPAAAGFGATSTVADLAVFAGDL  163 (280)
T ss_dssp             TTCCCCCHHHHHHH-------H-HHHHHHHT--SCHHHHHHHHTHHHHTCTTCEECSGGGGTTTCEEECHHHHHHHHHHH
T ss_pred             CCEEEECCHHHHHH-------H-HHHHHHCC--CCHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             96457775769999-------9-98874338--62788999999975289762415883314677433277999999998


Q ss_pred             HH
Q ss_conf             63
Q gi|254780435|r  178 KT  179 (336)
Q Consensus       178 ~~  179 (336)
                      +.
T Consensus       164 l~  165 (280)
T 3i7j_A          164 LR  165 (280)
T ss_dssp             HS
T ss_pred             HC
T ss_conf             48


No 45 
>1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ...
Probab=99.02  E-value=3.7e-08  Score=67.90  Aligned_cols=185  Identities=12%  Similarity=-0.009  Sum_probs=112.7

Q ss_pred             CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHH
Q ss_conf             568999978962977643---99830752698999999998513577778766035178772003664434-51012346
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTL  104 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv  104 (336)
                      -+.+++|.+||+++. .|   +.++++|+|+-|++|+..+||   +|.+..++.+...      +++.... .....+++
T Consensus        19 G~~v~~d~~tg~~~~-~~~~ra~~~~~PGStfKp~~~~aaLe---~G~i~~~~~~~~~------~g~~~~~~~~~g~~tl   88 (246)
T 1k55_A           19 GVFVLCKSSSKSCAT-NDLARASKEYLPASTFKIPNAIIGLE---TGVIKNEHQVFKW------DGKPRAMKQWERDLTL   88 (246)
T ss_dssp             EEEEEEESSTTSEEE-SCHHHHTCCBCCGGGGHHHHHHHHHH---TTSSCSTTCEECC------CSCCCSSGGGSSCEEH
T ss_pred             EEEEEEECCCCCEEE-ECHHHHHCCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCC------CCCCCCCCCCCCCCCH
T ss_conf             589999899996886-37667626879974389999999998---0899974455368------9956676777999799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf             777676777423589999976401117899999999998709835344123576--46222256999999989876312-
Q gi|254780435|r  105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDF-  181 (336)
Q Consensus       105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl--~~~~~~tTa~Dla~l~~~~~~~~-  181 (336)
                      ++    .|..|.|.+..-|++.+|      .+.+.+.++++|+.+.........  ...+-..|+..|+.....+...- 
T Consensus        89 ~~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~iangg~  158 (246)
T 1k55_A           89 RG----AIQVSAVPVFQQIAREVG------EVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKL  158 (246)
T ss_dssp             HH----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCSCTTTTTTTSSCCBCHHHHHHHHHHHHTTCS
T ss_pred             HH----HHHHCCCHHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             99----999748299999999839------89999999983999887888765344469865569999999999972998


Q ss_pred             ---HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHH------HEEEEEEEECCEEEEEEEEC
Q ss_conf             ---33110123020001744786014565668971153321241120------00234564288689999837
Q gi|254780435|r  182 ---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG------FNIVASAIQGDQSLIAVILG  245 (336)
Q Consensus       182 ---p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG------~~lv~~a~~~g~~li~Vvlg  245 (336)
                         |+.......     .-+.-       .......++|||+.....      .-||+.+..++.+++.+|+-
T Consensus       159 ~~sp~~~~~~~~-----~m~~~-------~~~g~~vagKTGTa~~g~~~~~~~aWFvGf~p~~~p~~~~av~i  219 (246)
T 1k55_A          159 SASKENQLIVKE-----ALVTE-------AAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNM  219 (246)
T ss_dssp             SSCHHHHHHHHH-----HTEEE-------EETTEEEEEEEEECCCCCSSSCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCHHHHHHHHH-----HHHHH-------HHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf             778899999999-----99987-------76642214445122205789985389999998799859999999


No 46 
>3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A*
Probab=99.02  E-value=4.2e-08  Score=67.54  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=110.3

Q ss_pred             CEEEEEECCCCEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC-CCHHHHHH
Q ss_conf             56899997896297764--3998307526989999999985135777787660351787720036644345-10123467
Q gi|254780435|r   29 PYYTLLDTNTGHVIAEN--YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-KGSTMTLD  105 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~k--n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~-~g~~~tv~  105 (336)
                      -+.+++|..+|+++...  .+.++++|+|+-|+++++.+||   +|.++.++.+.-+.       ...... ....++++
T Consensus        22 G~~v~~d~~~~~~~~~~~~ra~~~~~PGSTfK~~~~~aaLe---~G~~~~~~~~~~~g-------~~~~~~~~~g~~~l~   91 (244)
T 3g4p_A           22 GVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLE---NHKATTNEIFKWDG-------KKRTYPMWEKDMTLG   91 (244)
T ss_dssp             EEEEEEETTEEEEEESCGGGGGCCBCCGGGHHHHHHHHHHH---TTSCCSSCCBCCCS-------CCCSSGGGSSCBCHH
T ss_pred             EEEEEEECCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCC-------CCCCCCCCCCCCCHH
T ss_conf             38999978988664354001137879964799999999998---69999742234789-------650578878886999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             77676777423589999976401117899999999998709835344123576--4622225699999998987631233
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQ  183 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl--~~~~~~tTa~Dla~l~~~~~~~~p~  183 (336)
                      +    .|..|.|.+..-|+..+|      .+.+.+.++.+|+.+.........  -..+...|+.+|+.+...+..+-..
T Consensus        92 ~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~iTp~q~a~~~~~lan~g~~  161 (244)
T 3g4p_A           92 E----AMALSAVPVYQELARRTG------LELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLP  161 (244)
T ss_dssp             H----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCTTCCCTTCTTTHHHHSSCCBCHHHHHHHHHHHHTTCSS
T ss_pred             H----HHHHCCHHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCC
T ss_conf             9----999638599999998708------387899999789999889865556110787018699999999999709805


Q ss_pred             HHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH---EEEEEEEE-CCEEEEEEEE
Q ss_conf             1101230200017447860145656689711533212411200---02345642-8868999983
Q gi|254780435|r  184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF---NIVASAIQ-GDQSLIAVIL  244 (336)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~---~lv~~a~~-~g~~li~Vvl  244 (336)
                      +...+. +.....-+...       ..-+..++|||+....+.   -|++.+.. +++.++.|++
T Consensus       162 ~~~~~~-~~v~~~m~~~~-------~~g~~~aGKTGT~~~~~~~~~WFvG~~~~~~~~~~~~~v~  218 (244)
T 3g4p_A          162 FKLETQ-EEVKKMLLIKE-------VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLN  218 (244)
T ss_dssp             SCHHHH-HHHHHTTEEEE-------ETTEEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCHHHH-HHHHHHHHHHH-------HHCEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf             585589-99999999755-------4322237858711268998789999768698988999999


No 47 
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Probab=99.01  E-value=6.7e-09  Score=72.39  Aligned_cols=136  Identities=17%  Similarity=0.206  Sum_probs=81.3

Q ss_pred             CCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHH
Q ss_conf             7896297764-------------399830752698999999998513577778766035178772003664434510123
Q gi|254780435|r   36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM  102 (336)
Q Consensus        36 ~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~  102 (336)
                      ...|+++|++             +.|..+++||+||.+|+.+++..+++|+++||++|.-.  ....     ....++.+
T Consensus        27 ~~~g~~v~~~~~G~ad~~~~~p~~~dT~f~i~SvSK~fTa~~i~~Lve~G~l~lddpv~~y--lP~~-----~~~~~~~i   99 (447)
T 2qmi_A           27 IKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKF--VNIK-----LRPFGEPV   99 (447)
T ss_dssp             EETTEEEEEEEEEEEETTTTEECCSSCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGT--SSSC-----CCGGGCCC
T ss_pred             EECCEEEEEEEEEEECCCCCCCCCCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCHHHH--CCCC-----CCCCCCCC
T ss_conf             9999999998577504677998999997967008999999999999986999987808896--8522-----37888985


Q ss_pred             HHHHHHHHH-----------------------------------------HH-------HHHHHHHHHHHH---HH-CCC
Q ss_conf             467776767-----------------------------------------77-------423589999976---40-111
Q gi|254780435|r  103 TLDNALKLL-----------------------------------------IV-------KSANDIAVAIAE---SL-CKT  130 (336)
Q Consensus       103 tv~dll~~~-----------------------------------------li-------~S~Ndaa~aLAe---~i-~Gs  130 (336)
                      |+++||.-.                                         ++       .-+|..-..|++   .+ |.+
T Consensus       100 Ti~~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGt~~~Ysn~~y~lLg~iie~vtg~~  179 (447)
T 2qmi_A          100 TVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVS  179 (447)
T ss_dssp             BHHHHHTTCSSCCBCSHHHHHHHHHTTCSCCCCCCSHHHHHHHGGGGGGGCCSCTTSCCCCCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHCCC
T ss_conf             89997017679987665212231010222235556726789999975422356888611234557999999999984999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEECCCCC---------------------------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             7899999999998709835344123576---------------------------4622225699999998987631
Q gi|254780435|r  131 EKKFVQHMNNTSKNLGLSATHFMNAHGV---------------------------VQHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       131 ~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl---------------------------~~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      .+.|++  ..-.+-|||++|.|..+...                           +..+-+||++||++.++.++.+
T Consensus       180 ~~~~~~--~~I~~PLgm~~T~~~~~~~~~~~~~a~gy~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l~~  254 (447)
T 2qmi_A          180 YEEYIK--KKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIER  254 (447)
T ss_dssp             HHHHHH--HHTTTTTTCTTCBSSHHHHTTCSCBCCEEEECTTSCEEEECCCTTCCTTTCCEECHHHHHHHHHHHHTT
T ss_pred             HHHHHH--HHHHHHCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             999999--976511288663546873440454100021176565366677666665542007899999999999748


No 48 
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A*
Probab=99.00  E-value=5.6e-08  Score=66.77  Aligned_cols=190  Identities=13%  Similarity=0.031  Sum_probs=111.6

Q ss_pred             CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             568999978962977643---99830752698999999998513577778766035178772003664434510123467
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD  105 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~  105 (336)
                      -+.+++|..+|+++..-|   +.++++|+|+-|++|++.+||   +|.++.++.+.....      ...+-.....++++
T Consensus        17 g~~v~~d~~~~~~~~~~n~~~~~~~y~PGSTfK~~~~~aaLe---~g~i~~~~~~~~~~~------~~~~~~~~~~~tl~   87 (251)
T 3isg_A           17 GCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFD---AEIIDQKTIFKWDKT------PKGMEIWNSNHTPK   87 (251)
T ss_dssp             EEEEEEETTTCCEEEEECHHHHTCCBCCGGGHHHHHHHHHHH---TTSCCTTCCBCCCSS------CCSSGGGSSCBCHH
T ss_pred             CEEEEEECCCCCEECCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEEECCC------CCCCCCCCCCCCHH
T ss_conf             249999789898500308677467779953599999999998---599889955773265------66766779982989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------CCCCCCCHHHHHHHHHHH
Q ss_conf             776767774235899999764011178999999999987098353441235764--------622225699999998987
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------QHGHYTTARDMAILSWRI  177 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------~~~~~tTa~Dla~l~~~~  177 (336)
                      +.    |..|.|-...-|+..+|      .+.|.+.++.+|+.+-......+..        ..+-..|+..|+.+...+
T Consensus        88 ~A----l~~S~N~~~~~la~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~i  157 (251)
T 3isg_A           88 TW----MQFSVVWVSQEITQKIG------LNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKI  157 (251)
T ss_dssp             HH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCCC--CCCHHHHTTSSSSCCBCHHHHHHHHHHH
T ss_pred             HH----HHHCCHHHHHHHHHHCC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHHHHHH
T ss_conf             99----98715799999987638------313789999769999888886422235566311476014599999999999


Q ss_pred             HHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH-----EEEEEEEE-CCEEEEEEEE
Q ss_conf             6312331101230200017447860145656689711533212411200-----02345642-8868999983
Q gi|254780435|r  178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF-----NIVASAIQ-GDQSLIAVIL  244 (336)
Q Consensus       178 ~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~-----~lv~~a~~-~g~~li~Vvl  244 (336)
                      ..+-..+....... . .+........     .-+..++|||++...+.     -||+.+.. +++.++.|++
T Consensus       158 an~~~~~~~~~~~~-i-~~~m~~~~~~-----~g~~vaGKTGTa~~~~~~~~~~WFvGy~p~~~~~~~~~~v~  223 (251)
T 3isg_A          158 INHNLPVKNSAIEN-T-IENMYLQDLD-----NSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSA  223 (251)
T ss_dssp             HTTCSSSCHHHHHH-H-HHHTEEEECT-----TSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEE
T ss_pred             HCCCCCCCHHHHHH-H-HHHHHHHEEC-----CCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf             83993138589999-9-9997562332-----66421366377547899985399999987489988999999


No 49 
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A*
Probab=98.98  E-value=6.8e-08  Score=66.25  Aligned_cols=189  Identities=10%  Similarity=-0.020  Sum_probs=113.4

Q ss_pred             CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             568999978962977643---99830752698999999998513577778766035178772003664434510123467
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD  105 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~  105 (336)
                      -+.++||.++|+++. .|   +.++++|+|+-|+.|+..+||   +|.+..++.+......     ...+-.....++++
T Consensus        31 G~~v~~d~~~g~~~~-~n~~~~~~~y~PGStfK~~~~~aaLe---~G~i~~~~~~~~~~~~-----~~~~~~~~g~~~l~  101 (255)
T 1xkz_A           31 GSFVMYSMKKDKYYI-YNEKESRKRYSPNSTYKIYLAMFGLD---RHIINDENSRMSWNHK-----HYPFDAWNKEQDLN  101 (255)
T ss_dssp             EEEEEEETTTTEEEE-ESHHHHTSEECCGGGGHHHHHHHHHH---TTSSCSSCCCBCCCCC-----CCSSGGGSSCBCHH
T ss_pred             EEEEEEECCCCCEEC-CCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCEECCCCC-----CCCCCCCCCCCCHH
T ss_conf             269999899997652-18899658789954899999999998---6998887512259988-----70578778998999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7767677742358999997640111789999999999870983534412357-646222256999999989876312331
Q gi|254780435|r  106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-VVQHGHYTTARDMAILSWRIKTDFPQY  184 (336)
Q Consensus       106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G-l~~~~~~tTa~Dla~l~~~~~~~~p~~  184 (336)
                      +    .|..|.|-...-|+..+|      .+.|.+.++.+|+.+.....+.+ +-..+-..|+-.|+.+...+..+-..+
T Consensus       102 ~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~vTPlq~a~~~~~ian~g~~~  171 (255)
T 1xkz_A          102 T----AMQNSVNWYFERISDQIP------KNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHF  171 (255)
T ss_dssp             H----HHHTTCHHHHHHHHTTSC------HHHHHHHHHHHTCTTCCCTTSSSTTTTSSCCEEHHHHHHHHHHHHHCC-CS
T ss_pred             H----HHHHCCCHHHHHHHHHHC------CHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             9----999767499999887617------226899999808898874557544437975354999999999997099666


Q ss_pred             HCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH----EEEEEEEECCEEEEEEEE
Q ss_conf             101230200017447860145656689711533212411200----023456428868999983
Q gi|254780435|r  185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF----NIVASAIQGDQSLIAVIL  244 (336)
Q Consensus       185 ~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~----~lv~~a~~~g~~li~Vvl  244 (336)
                      ..    .....-...+..    ....-+-.++|||+....+.    -||+.+..++.+++++|+
T Consensus       172 s~----~~~~~~~~~m~~----~~~~G~~vagKTGTa~~~~~~~~~WFvGy~p~~~p~~~vav~  227 (255)
T 1xkz_A          172 SK----KAKNQLSSSLLI----KKNEKYELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATH  227 (255)
T ss_dssp             CH----HHHHHHHHHHEE----EECSSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE
T ss_pred             CH----HHHHHHHHHHHH----HHHCCCHHHCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf             88----899999999998----875585000201221418996518999999879985999999


No 50 
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A*
Probab=98.95  E-value=3.2e-07  Score=62.17  Aligned_cols=132  Identities=15%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC--HHHH-----------HCCC-----CCCCCCCCHHHHHHHH
Q ss_conf             39983075269899999999851357777876603517--8772-----------0036-----6443451012346777
Q gi|254780435|r   46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS--KNAS-----------EYPP-----SNSTFKKGSTMTLDNA  107 (336)
Q Consensus        46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs--~~~~-----------~~~~-----s~~~l~~g~~~tv~dl  107 (336)
                      ..|..+++||+||.+|+.+++..+++|+++||++|.-.  +-..           ...|     ..........++.+++
T Consensus        51 t~dT~f~i~SvtK~~ta~~v~~Lve~G~l~Ld~pv~~ylp~~~~~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~  130 (363)
T 2drw_A           51 TGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEI  130 (363)
T ss_dssp             CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHH
T ss_pred             CCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99997963037899999999999987998888870215876556788779996738569986544422244344689999


Q ss_pred             HHHHHHH----------H-HHHHHHHHH---HHHCC-CHHHHHHHHHHHHHHCCCCCCEEECCCCCC-------------
Q ss_conf             6767774----------2-358999997---64011-178999999999987098353441235764-------------
Q gi|254780435|r  108 LKLLIVK----------S-ANDIAVAIA---ESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVV-------------  159 (336)
Q Consensus       108 l~~~li~----------S-~Ndaa~aLA---e~i~G-s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~-------------  159 (336)
                      +..+.-.          + +|-.-..|+   |.+.| +.+.|++  ..-.+-|||++|.|..+...+             
T Consensus       131 ~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie~vtg~~~~~~~~--e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~  208 (363)
T 2drw_A          131 VDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLR--SRIFAPLGMKDTWVGTHETFPIEREARGYMHAAA  208 (363)
T ss_dssp             HHHHHHHSCCCCTTSSCCCCSHHHHHHHHHHHHHHTSCHHHHHH--HHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBT
T ss_pred             HHHHHHCCCCCCCCCEEEECCCCEECCCHHHHHHCCCCHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf             99885377667998413413552110105777653998999999--8754647986657678412444533310111455


Q ss_pred             ---------------------------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             ---------------------------------62222569999999898763
Q gi|254780435|r  160 ---------------------------------QHGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       160 ---------------------------------~~~~~tTa~Dla~l~~~~~~  179 (336)
                                                       ..+-+|||+||+++.+.++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~sta~Dla~~~~~l~~  261 (363)
T 2drw_A          209 DDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFD  261 (363)
T ss_dssp             TCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGGGTCEEECHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             55564323334566656633463212344566655211899999999999868


No 51 
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=98.93  E-value=6.1e-08  Score=66.54  Aligned_cols=124  Identities=17%  Similarity=0.236  Sum_probs=75.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH--------------------
Q ss_conf             399830752698999999998513577778766035178772003664434510123467--------------------
Q gi|254780435|r   46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD--------------------  105 (336)
Q Consensus        46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~--------------------  105 (336)
                      +.|.++++||+||.+|+.+++..+++|+++||++|.  +.....       ...+.+|++                    
T Consensus        53 t~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~--~ylp~~-------~~~~~iTi~~LL~HtSGl~~~~~~~~~~~  123 (349)
T 1yqs_A           53 TTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVN--TYLPGL-------LPDDRITVRQVMSHRSGLYDYTNDMFAQT  123 (349)
T ss_dssp             CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHSTTC-------SSCTTCBHHHHHTTCSCCCCTHHHHTSSH
T ss_pred             CCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCC-------CCCCCCCHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             999979630479999999999999879999888210--028876-------88886659998216478987655310220


Q ss_pred             ---------------HHHHHHHHH----------H-HHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECC
Q ss_conf             ---------------776767774----------2-358999997---64011178999999999-98709835344123
Q gi|254780435|r  106 ---------------NALKLLIVK----------S-ANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNA  155 (336)
Q Consensus       106 ---------------dll~~~li~----------S-~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~  155 (336)
                                     |++....-.          + +|-....|+   |.+.|  +.|-+.|.++ .+-|||++|.|..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtG--~~~~~~~~e~i~~PLGm~~t~~~~~  201 (349)
T 1yqs_A          124 VPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG--HSVATEYQNRIFTPLNLTDTFYVHP  201 (349)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTTTTCTTCBCCTT
T ss_pred             CCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             44300002344788999999875044579995677643352310221321049--9789999998664329987788896


Q ss_pred             C---------CC----------------------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5---------76----------------------4622225699999998987631
Q gi|254780435|r  156 H---------GV----------------------VQHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       156 ~---------Gl----------------------~~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      .         |.                      ...+-++|++||++..+.++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dl~~~~~~l~~g  257 (349)
T 1yqs_A          202 DTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSG  257 (349)
T ss_dssp             CCCCCSSBCCCEECCSSTTCCCEECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             02123212124223556787231353346543466764106899999999998669


No 52 
>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1
Probab=98.90  E-value=1.1e-07  Score=65.00  Aligned_cols=220  Identities=13%  Similarity=0.095  Sum_probs=107.7

Q ss_pred             CEEEEEECCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCC
Q ss_conf             56899997896297764-------------39983075269899999999851357777876603517877200366443
Q gi|254780435|r   29 PYYTLLDTNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST   95 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~   95 (336)
                      +.+.|.=...|+++|++             +.+.++++||+||.+|+.+++..+++|++ ||++|.-  ......     
T Consensus        23 PG~avaVv~~g~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvSK~fTa~~vl~Lve~G~l-Lddpv~~--ylP~~~-----   94 (520)
T 1ei5_A           23 PGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLDAVGEPEL-LDDALEA--YLDKFE-----   94 (520)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHHHTCSGGG-GHHHHHH--HTTTCC-----
T ss_pred             CCEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC-CCCHHHH--HCCCCC-----
T ss_conf             81899999999999998277750677998999986971708999999999999974994-5681788--684656-----


Q ss_pred             CCCCHHHHHHHHHHH------------------------------HHH-----------HH-HHHHHHHHH---HHHCC-
Q ss_conf             451012346777676------------------------------777-----------42-358999997---64011-
Q gi|254780435|r   96 FKKGSTMTLDNALKL------------------------------LIV-----------KS-ANDIAVAIA---ESLCK-  129 (336)
Q Consensus        96 l~~g~~~tv~dll~~------------------------------~li-----------~S-~Ndaa~aLA---e~i~G-  129 (336)
                         ++.+|+++||.-                              +--           .+ +|-.-..|+   |.+.| 
T Consensus        95 ---~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~YSN~gy~lLg~iiE~vtG~  171 (520)
T 1ei5_A           95 ---DERPAVRDLCNNQSGLRDYWALSVLCGADPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFRILADLIEAHTGR  171 (520)
T ss_dssp             ---SCCCCHHHHHTTCSCCCCHHHHHHHTTCCTTCCBCHHHHHHHHHTCCCCSSCTTSSCCCCHHHHHHHHHHHHHHHTS
T ss_pred             ---CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC
T ss_conf             ---68886899606877897543443223556201245355999986257776898966764751676766768877199


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEECCCCCC-------------------------CCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf             178999999999987098353441235764-------------------------62222569999999898763123--
Q gi|254780435|r  130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV-------------------------QHGHYTTARDMAILSWRIKTDFP--  182 (336)
Q Consensus       130 s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~-------------------------~~~~~tTa~Dla~l~~~~~~~~p--  182 (336)
                      +-+.|++.  .-.+-|||++|.|..+....                         +.+-++|+.||++..+.+.....  
T Consensus       172 s~~~~l~e--~I~~PLGM~~t~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gaggl~sT~~Dl~~~~~~l~~~~~~~  249 (520)
T 1ei5_A          172 TLVDILSE--RIFAPAGMKRAELISDTALFDECTGYEGDTVRGFLPATNRIQWMGDAGICASLNDMIAWEQFIDATRDDE  249 (520)
T ss_dssp             CHHHHHHH--HTHHHHTCTTCEECCBGGGCCSSCCEEEETTTEEEECCCCBBCCSSSCEEECHHHHHHHHHHHHHTTTCT
T ss_pred             CHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCC
T ss_conf             88895077--6415458855505887223344431004456774456775544577642407999999999976799998


Q ss_pred             --HHHCCCCEEECCCCCEEEEECCCCCCCCCCEE-EEEEECCHHHHH-EEEEEEEECCEEEEEEEECCCCHHHHHHHHHH
Q ss_conf             --31101230200017447860145656689711-533212411200-02345642886899998378986678999999
Q gi|254780435|r  183 --QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGF-NIVASAIQGDQSLIAVILGALDRNTRNKVSAS  258 (336)
Q Consensus       183 --~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~-G~KTG~t~~AG~-~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~~~  258 (336)
                        .+.++.....+..+...-+-.-..+..+.|.. -.++|.+  .|| |.+...-  ++++.+|||-..+. .-..-+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~YG~G~~~~~~~g~~~~~H~G~~--~G~~s~~~~~P--e~~l~ivvl~N~~~-~~~~~~~~  324 (520)
T 1ei5_A          250 SGLYRRLSGPQTFKDGVAAPYGFGLNLHETGGKRLTGHGGAL--RGWRCQRWHCA--DERLSTIAMFNFEG-GASEVAFK  324 (520)
T ss_dssp             TSHHHHHSSCCBCTTSCBCSEETTEEEEEETTEEEEEEEEEE--TTEEEEEEEEG--GGTEEEEEEESBSS-CHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCC--CCCEEEEEEEE--CCCEEEEEEEECCC-CHHHHHHH
T ss_conf             899986437721368997863635899814990799936837--88269999998--89989999993998-89999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999851
Q gi|254780435|r  259 LLSMGFYN  266 (336)
Q Consensus       259 Ll~~~f~~  266 (336)
                      +++..+..
T Consensus       325 i~~~~lg~  332 (520)
T 1ei5_A          325 LMNIALGV  332 (520)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHCCC
T ss_conf             99997299


No 53 
>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A*
Probab=98.85  E-value=3.1e-08  Score=68.33  Aligned_cols=46  Identities=24%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             CCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf             7896297764-------------399830752698999999998513577778766035
Q gi|254780435|r   36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT   81 (336)
Q Consensus        36 ~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~   81 (336)
                      ...|+++|++             +.|.++++||+||.+|+.+++..+++|+++||++|.
T Consensus        43 ~~~G~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvtK~~ta~~i~~Lve~G~l~ldd~v~  101 (392)
T 1ci9_A           43 ARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELALDAPVT  101 (392)
T ss_dssp             EETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSSCTTSBGG
T ss_pred             EECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999984765144559989999879713179999999999999779866777411


No 54 
>3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis}
Probab=98.81  E-value=3e-07  Score=62.30  Aligned_cols=128  Identities=23%  Similarity=0.302  Sum_probs=73.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHH---------------------
Q ss_conf             399830752698999999998513577778766035178772003664434-5101234---------------------
Q gi|254780435|r   46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMT---------------------  103 (336)
Q Consensus        46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~t---------------------  103 (336)
                      +.|.++++||+||.+|+.+++..+++|+++||++|.-  .....  ..... ...+.+|                     
T Consensus        53 ~~~t~f~i~SvsK~~Ta~~i~~lv~~G~l~ld~~v~~--ylP~~--~~~~~~~~~~~ITi~~LL~htSGl~~~~~~~~~~  128 (351)
T 3ozh_A           53 RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLKK--YAPKG--VNVPSYSAKQPIRLLHLASHTSGLPREQPGGPQK  128 (351)
T ss_dssp             CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTCBGGG--GSCTT--CCCCCSSTTCCCBHHHHHTTCSCCCSSCSSCCSS
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--CCCHH--HCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCHHH
T ss_conf             9999686300899999999999998699998887201--38222--0367767678627899565747998766534022


Q ss_pred             --------HHHHHHHHHH----------HHHHHHHH-HHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECCC----
Q ss_conf             --------6777676777----------42358999-997---64011178999999999-987098353441235----
Q gi|254780435|r  104 --------LDNALKLLIV----------KSANDIAV-AIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAH----  156 (336)
Q Consensus       104 --------v~dll~~~li----------~S~Ndaa~-aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~~----  156 (336)
                              .++++..+..          .+=++..+ .|+   |.+.|  +.|-+.|+++ .+-|||++|.|.-+.    
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~pgt~~~Ysn~~~~lLg~iie~vtg--~~~~~~~~~~I~~PLgm~~t~~~~~~~~~~  206 (351)
T 3ozh_A          129 RPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLLADALSRAAG--KPYAHLLRDKITAPLGMKNTTLTPTAEQCK  206 (351)
T ss_dssp             CCTTCCSCHHHHHHHHTTCCCCSCTTSEEECCHHHHHHHHHHHHHHHT--SCHHHHHHHHTHHHHTCTTCBSSCCHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_conf             001134468999999985887689885464334378999999999879--856563686526667996777469846732


Q ss_pred             ----CC------------CCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ----76------------462222569999999898763
Q gi|254780435|r  157 ----GV------------VQHGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       157 ----Gl------------~~~~~~tTa~Dla~l~~~~~~  179 (336)
                          |.            +..+-++|++||++..+.++.
T Consensus       207 ~~a~~~~~~~~~~~~~~~~agg~~st~~Dla~f~~~~l~  245 (351)
T 3ozh_A          207 RLMIGVGSSRCGNTVAAAGSGGIYSTPEDMQHWMQQFLA  245 (351)
T ss_dssp             TBCCCTTCCCCCCCGGGTTTTCCEECHHHHHHHHHTTSC
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             700045767778755556865542789999999999956


No 55 
>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A
Probab=98.73  E-value=1e-07  Score=65.19  Aligned_cols=151  Identities=17%  Similarity=0.191  Sum_probs=87.6

Q ss_pred             CCCEEEE-EECCCCEEEEEE------------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-HHH
Q ss_conf             7856899-997896297764------------------39983075269899999999851357777876603517-877
Q gi|254780435|r   27 KLPYYTL-LDTNTGHVIAEN------------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNA   86 (336)
Q Consensus        27 ~a~~~i~-~d~~tG~iL~~k------------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs-~~~   86 (336)
                      ..+.+++ +-...|+|+|++                  ..|..+.+||+||.+|+.+++..+++|+++||++|.-. ++-
T Consensus        48 ~iPG~~v~v~~~~G~vvy~~~~G~~~~~~~~~~~~~Pvt~dT~f~iaSiTK~~Ta~ai~~Lve~G~L~LddpV~~ylPef  127 (432)
T 3hlc_A           48 QIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLPDL  127 (432)
T ss_dssp             SCSEEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHHHHHTTSCCTTSBTTTTCHHH
T ss_pred             CCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHH
T ss_conf             99966999994699799987462144456654468999999979610237999999999999869988887031228044


Q ss_pred             HHC-------CCCCCCC-CCCHHHHHHHHHHHH------------------------------------HH-------HH
Q ss_conf             200-------3664434-510123467776767------------------------------------77-------42
Q gi|254780435|r   87 SEY-------PPSNSTF-KKGSTMTLDNALKLL------------------------------------IV-------KS  115 (336)
Q Consensus        87 ~~~-------~~s~~~l-~~g~~~tv~dll~~~------------------------------------li-------~S  115 (336)
                      ...       +.....+ ...+.+|+++||.-.                                    +.       .+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~ITlr~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~pg~~~~y  207 (432)
T 3hlc_A          128 SAMPVLEGFDDAGNARLRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRLAPPAVNDPGAEWIY  207 (432)
T ss_dssp             HTCCEEEEECTTCCEEEECCSSCCBHHHHHTTCSSCCCGGGCHHHHHHHHTTCCCC--------CSCSCBSSCTTSCCCC
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             05752236655555446555689869997189889976655714666543044342068899987508665699842774


Q ss_pred             HHHHHHHHH---HHH-CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------------------------------
Q ss_conf             358999997---640-11178999999999987098353441235764--------------------------------
Q gi|254780435|r  116 ANDIAVAIA---ESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------------------------  159 (336)
Q Consensus       116 ~Ndaa~aLA---e~i-~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------------------------------  159 (336)
                      .| .-..|+   |.+ +-+.+.|++.  +-.+-|||++|.|.-+....                                
T Consensus       208 ~~-~~~lLg~iiE~vtG~~~~~~l~e--~I~~PLGM~~T~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  284 (432)
T 3hlc_A          208 GT-NLDWAGKLVERATGLDLEQYLQE--NICAPLGITDMTFKLQQRPDMLARRADQTHRNSADGRLRYDDSVYFRADGEE  284 (432)
T ss_dssp             CT-HHHHHHHHHHHHHSSCHHHHHHH--HTHHHHTCCSEESCGGGCHHHHHHCCCEEEECTTTCCEEEECCGGGTCCCSS
T ss_pred             CC-CHHHHHHHHHHHHHCCCCCCCHH--EEECCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf             76-58876578876530221101032--0565678753140058303210111222221157884342354221345653


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             ---622225699999998987631
Q gi|254780435|r  160 ---QHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       160 ---~~~~~tTa~Dla~l~~~~~~~  180 (336)
                         ..+-+|||+||+++.+.++.+
T Consensus       285 ~~g~gGl~STa~Dlakf~~~ll~~  308 (432)
T 3hlc_A          285 CFGGQGVFSSPGSYMKVLHSLLKR  308 (432)
T ss_dssp             CCTTTCCEECHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             356775647799999999999843


No 56 
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens}
Probab=98.71  E-value=1.5e-07  Score=64.21  Aligned_cols=136  Identities=18%  Similarity=0.048  Sum_probs=82.7

Q ss_pred             CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH
Q ss_conf             7896297764------------3998307526989999999985135777787660351787720036644345101234
Q gi|254780435|r   36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT  103 (336)
Q Consensus        36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t  103 (336)
                      ...|+++++.            +.|..+++||+||.+|+.+++..+++|+++||++|.-  ......     -...+.+|
T Consensus        29 ~~~g~i~~~~~G~~d~~~~~~~~~dt~f~iaSisK~~ta~~i~~Lve~g~l~Ld~~v~~--ylp~~~-----~~~~~~IT  101 (358)
T 2qz6_A           29 IQNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKLKLSDPASQ--YLPALR-----GDKFDHIS  101 (358)
T ss_dssp             EETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--GCGGGT-----TSGGGSSB
T ss_pred             EECCEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCC-----CCCCCCEE
T ss_conf             99999999858760066698999999796154789999999999997599876670434--077442-----22457516


Q ss_pred             HHHHH----------------------HHHHHH----------H-HHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCC
Q ss_conf             67776----------------------767774----------2-358999997---64011178999999999-98709
Q gi|254780435|r  104 LDNAL----------------------KLLIVK----------S-ANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLG  146 (336)
Q Consensus       104 v~dll----------------------~~~li~----------S-~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG  146 (336)
                      +++||                      ..+.-.          + +|-.-..|+   |.+.|  ..|.+.|.++ .+-||
T Consensus       102 ir~LLshtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~iiE~~tg--~~~~~~~~e~i~~PLg  179 (358)
T 2qz6_A          102 LLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLAAQSLG--QPFEKLMEQTVLPKLG  179 (358)
T ss_dssp             HHHHHTTCSSCCCSSCC-----CHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHTTT--SCHHHHHHHTTTGGGT
T ss_pred             EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--CCHHHHHHHHHHCCCC
T ss_conf             73143554576533567677999999999973898779994446345388898899999859--6988989999745359


Q ss_pred             CCCCEEECCCC--------CC----------------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             83534412357--------64----------------622225699999998987631
Q gi|254780435|r  147 LSATHFMNAHG--------VV----------------QHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       147 ~~~T~f~n~~G--------l~----------------~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      |++|.|.-+.-        ..                ..+-++|++||++..+.++..
T Consensus       180 m~~t~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gg~~st~~Dl~~~~~~ll~~  237 (358)
T 2qz6_A          180 LKHTFISVPETQMSLYAQGYDKAGKPVRVSPGALDAEAYGIKTSTSDLIHYVEVNMHP  237 (358)
T ss_dssp             CSSEESSCCGGGGGGBCCCBCTTSCBCCCCCCTTHHHHTCCEECHHHHHHHHHHHHCG
T ss_pred             CCCCCCCCCHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             8564268984660662200114896555036655655464315899999999998589


No 57 
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A*
Probab=98.66  E-value=1.7e-07  Score=63.89  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             CEEEEEECCCCEEEEEE-----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH
Q ss_conf             56899997896297764-----3998307526989999999985135777787660351787720036644345101234
Q gi|254780435|r   29 PYYTLLDTNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT  103 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~k-----n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t  103 (336)
                      .+.+|+  .-|+|+||+     +++.++..+|+||-+|+.++...+++|++++|++|.  +......++     ..+.+|
T Consensus        83 ~a~lV~--~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~lig~lv~~G~l~ldd~v~--~ylPe~~~~-----~~~~iT  153 (392)
T 2dcf_A           83 DAFLVL--RGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVT--EYVPELAGS-----VYDGPS  153 (392)
T ss_dssp             EEEEEE--ETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGG--GTCGGGTTS-----TTSSCB
T ss_pred             CEEEEE--ECCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC--EECHHHCCC-----CCCCCC
T ss_conf             189999--99999999648999978826257679999999999999839655433300--203322145-----334454


Q ss_pred             HHHHHHHHH-------------------------------------------H-------HHHHHHHHHHH---HHHCCC
Q ss_conf             677767677-------------------------------------------7-------42358999997---640111
Q gi|254780435|r  104 LDNALKLLI-------------------------------------------V-------KSANDIAVAIA---ESLCKT  130 (336)
Q Consensus       104 v~dll~~~l-------------------------------------------i-------~S~Ndaa~aLA---e~i~Gs  130 (336)
                      +++||...-                                           .       .=.|-...+|+   |.+.| 
T Consensus       154 ir~LL~mtsGl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~f~Y~~~~~~llg~vle~~tG-  232 (392)
T 2dcf_A          154 VLQVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTG-  232 (392)
T ss_dssp             HHHHHTTCBCCSCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHC-
T ss_conf             9888544278876545355630456666654202123368799999875176679997599956878999999999979-


Q ss_pred             HHHHHHHHHHHH-HHCCCCCCEEE--CCCCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf             789999999999-87098353441--2357646--2222569999999898763
Q gi|254780435|r  131 EKKFVQHMNNTS-KNLGLSATHFM--NAHGVVQ--HGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       131 ~~~Fv~~MN~~a-~~lG~~~T~f~--n~~Gl~~--~~~~tTa~Dla~l~~~~~~  179 (336)
                       ..|.+.|.++. +.|||.++.+.  ++.|.+.  .+-.+|++|++++..-++.
T Consensus       233 -~~~~~~~~e~i~~plG~~~~~~~~~~~~g~~~~~~Gl~~t~rD~ar~g~l~l~  285 (392)
T 2dcf_A          233 -LRYVEALSTYLWAKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLD  285 (392)
T ss_dssp             -SCHHHHHHHHTGGGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             -98899889885165677655530237778743335676778899999999971


No 58 
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=98.54  E-value=7.7e-06  Score=53.74  Aligned_cols=138  Identities=17%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             CCEEEEEECCCCEEEEEEC------------------------------------CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             8568999978962977643------------------------------------9983075269899999999851357
Q gi|254780435|r   28 LPYYTLLDTNTGHVIAENY------------------------------------PDHPWNPASLTKLMTAYVVFSFLKE   71 (336)
Q Consensus        28 a~~~i~~d~~tG~iL~~kn------------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~   71 (336)
                      .-++++||..||+||.=-+                                    ....+||+|+-|++|+..+|+   +
T Consensus       151 ~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~~pl~Nra~~~~y~PGStfK~~t~aaaLe---~  227 (483)
T 3lo7_A          151 KGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALA---A  227 (483)
T ss_dssp             CEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTTCTTSCTTTSCCBCCGGGGHHHHHHHHHH---T
T ss_pred             CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH---C
T ss_conf             2799999789992999960688882101367741127999873146433101404412537988489999999998---0


Q ss_pred             CCCCCCCEEEECHHHHHCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             77787660351787720036644--------3451012346777676777423589999976401117899999999998
Q gi|254780435|r   72 KKAMLTTPITISKNASEYPPSNS--------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK  143 (336)
Q Consensus        72 g~~~ld~~v~vs~~~~~~~~s~~--------~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~  143 (336)
                      |....++... .. ....+++..        .......+++++    .+..|.|-+..-++..+|      .+.+.+.++
T Consensus       228 G~~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~----Al~~S~N~~f~~l~~~~G------~~~~~~~~~  295 (483)
T 3lo7_A          228 GATETEQLTA-AP-TIPLPGSTAQLENYGGAPCGDEPTVSLRE----AFVKSCNTAFVQLGIRTG------ADALRSMAR  295 (483)
T ss_dssp             TCCTTCEEEC-CS-BCCC-------BCC---CCSSSSEEEHHH----HHHTTCHHHHHHHHHHHC------HHHHHHHHH
T ss_pred             CCCCEEEEEC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHCCHHHHHHHHHHC------CHHHHHHHH
T ss_conf             9852000103-68-61136864211100254468987343999----998604258889999839------403433577


Q ss_pred             HCCCCCCEEECCCCCCC-------------------CCCCCCHHHHHHHHHHHHHH
Q ss_conf             70983534412357646-------------------22225699999998987631
Q gi|254780435|r  144 NLGLSATHFMNAHGVVQ-------------------HGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       144 ~lG~~~T~f~n~~Gl~~-------------------~~~~tTa~Dla~l~~~~~~~  180 (336)
                      .+|+.......+-++..                   .+...|+-.||.+...+..+
T Consensus       296 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANg  351 (483)
T 3lo7_A          296 AFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANG  351 (483)
T ss_dssp             HTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTT
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf             60899855677644443445653334543220110455446778877766654259


No 59 
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=98.52  E-value=4.8e-05  Score=48.91  Aligned_cols=143  Identities=17%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             CEEEEEECCCCEEEEEEC-----------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCC
Q ss_conf             568999978962977643-----------------998307526989999999985135777787660351787720036
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY-----------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP   91 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn-----------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~   91 (336)
                      -+++++|.+||+||.--+                 ....++|+|+-|.+|++.+||   +|.+++++.+.-...... +.
T Consensus       343 ~~~vv~dp~tG~IlAm~~~~~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~~aALe---~g~~~~~~~~~d~~~~~~-~~  418 (680)
T 2wad_A          343 VYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWE---NGVLSGNQTLTDQPIVFQ-GS  418 (680)
T ss_dssp             EEEEEECTTTCBEEEEEEEEECTTTCCEEECTTHHHHCCBCCGGGGHHHHHHHHHH---TTSCCSSCCEEECCBCBT-TS
T ss_pred             EEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCCCCC-CC
T ss_conf             69999966658044136763122100134544201111357875216788999997---089998735713784223-68


Q ss_pred             CCC--CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf             644--34510---1234677767677742358999997640111------------789999999999870983534412
Q gi|254780435|r   92 SNS--TFKKG---STMTLDNALKLLIVKSANDIAVAIAESLCKT------------EKKFVQHMNNTSKNLGLSATHFMN  154 (336)
Q Consensus        92 s~~--~l~~g---~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs------------~~~Fv~~MN~~a~~lG~~~T~f~n  154 (336)
                      ...  .-..|   ..+|+++.    |..|.|-.+.-+|+.++|.            .+.-++.+.+.++.+|+....-.+
T Consensus       419 ~~~~~~~~~~~~~g~itl~~A----l~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~  494 (680)
T 2wad_A          419 APIYSWYKLAYGSFPITAVEA----LEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGID  494 (680)
T ss_dssp             CCBCCTTTTTTCSEEECHHHH----HHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCS
T ss_pred             CCCCCCCCCCCCCCCCCHHHH----HHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             864210136778877205636----4507559999999875024454033304267876546889999970998656886


Q ss_pred             ----CCCC-CC-------------CCCCCCHHHHHHHHHHHHH
Q ss_conf             ----3576-46-------------2222569999999898763
Q gi|254780435|r  155 ----AHGV-VQ-------------HGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       155 ----~~Gl-~~-------------~~~~tTa~Dla~l~~~~~~  179 (336)
                          ..|+ |+             .+...|+-.||.....+..
T Consensus       495 lp~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~iaN  537 (680)
T 2wad_A          495 LPDESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIAN  537 (680)
T ss_dssp             SSCCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             6544567677523333223223577677899999999999975


No 60 
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=98.50  E-value=2e-05  Score=51.21  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=83.9

Q ss_pred             CEEEEEECCCCEEEEEE-------C---------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH
Q ss_conf             56899997896297764-------3---------------9983075269899999999851357777876603517877
Q gi|254780435|r   29 PYYTLLDTNTGHVIAEN-------Y---------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA   86 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~k-------n---------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~   86 (336)
                      -++++||..||+||.--       |               ....++|+|+-|++|+..+++   +|.+++++.+.-... 
T Consensus       241 g~~Vvmd~~TG~IlAmas~p~~d~n~~~~~~~~~~~~~~~~~~~~~PGStfK~~t~aaALe---~g~~~~~~~~~~~~~-  316 (702)
T 1qme_A          241 MTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAID---NNTFPGGEVFNSSEL-  316 (702)
T ss_dssp             EEEEEEETTTCBEEEEEEESCCCTTTCTTCCTTCCCCCTTTSCCBCCGGGGHHHHHHHHHH---TTCCCTTCEEECSCE-
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCC-
T ss_conf             3799997789908998325777755443456322202531011257752022998999997---697323302301340-


Q ss_pred             HHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-EEECC---
Q ss_conf             20036644-------34510123467776767774235899999764011178999999999987098353-44123---
Q gi|254780435|r   87 SEYPPSNS-------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT-HFMNA---  155 (336)
Q Consensus        87 ~~~~~s~~-------~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T-~f~n~---  155 (336)
                       ..++...       ....+-.+++++.    +..|.|-++..+++.+|      .+.+-+.++.+|+... .+.-|   
T Consensus       317 -~~~~~~~~~~~~~~~~~~~G~itl~~a----l~~S~N~~~~~l~~~lG------~~~~~~~~~~fG~g~~t~i~~~~e~  385 (702)
T 1qme_A          317 -KIADATIRDWDVNEGLTGGRMMTFSQG----FAHSSNVGMTLLEQKMG------DATWLDYLNRFKFGVPTRFGLTDEY  385 (702)
T ss_dssp             -EETTEEECCHHHHTTSCSCCEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTTTSCCCCSSSSCC
T ss_pred             -EECCCCCCCCCCCCCCCCCCEEEHHHH----CCCCCCHHHHHHHHHCC------CHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             -436852102446766778720013441----25233712566654258------4367889886078866688875345


Q ss_pred             CCC-CC------------CCCCCCHHHHHHHHHHHHH
Q ss_conf             576-46------------2222569999999898763
Q gi|254780435|r  156 HGV-VQ------------HGHYTTARDMAILSWRIKT  179 (336)
Q Consensus       156 ~Gl-~~------------~~~~tTa~Dla~l~~~~~~  179 (336)
                      .|. +.            .+...|+-+|+.....++.
T Consensus       386 ~g~~p~~~~~~~a~~~~Gq~~~vTPlqma~ayaaiAN  422 (702)
T 1qme_A          386 AGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIAN  422 (702)
T ss_dssp             CCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             7768765533333143079866799999999999971


No 61 
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=98.50  E-value=2.6e-05  Score=50.48  Aligned_cols=225  Identities=16%  Similarity=0.118  Sum_probs=120.4

Q ss_pred             CCCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECH
Q ss_conf             4785689999789629776439---------------------9830752698999999998513577778766035178
Q gi|254780435|r   26 NKLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK   84 (336)
Q Consensus        26 ~~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~   84 (336)
                      ...-++++||..||+||.--..                     ...++|+|+.|.+|++.+++   .|.++.+..+....
T Consensus       221 ~~~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~---~g~~~~~~~~~~~~  297 (542)
T 3equ_A          221 AKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALD---AGKTDLNERLNTQP  297 (542)
T ss_dssp             CSEEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHH---HTSSCTTCEEECCC
T ss_pred             CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH---CCCEECCEECCCCC
T ss_conf             556348985067783676426776662212356631124344407677842666899999985---69630330114577


Q ss_pred             HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CEEECC---CCCC
Q ss_conf             772003664-43451012346777676777423589999976401117899999999998709835-344123---5764
Q gi|254780435|r   85 NASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNA---HGVV  159 (336)
Q Consensus        85 ~~~~~~~s~-~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~-T~f~n~---~Gl~  159 (336)
                      ..  .++.. ..-.....+++++.    +..|.|....-|++.+|      .+.|-+.++++|+.. |-+.=|   .|..
T Consensus       298 ~~--~~~~~~~~~~~~G~~~l~~a----l~~S~N~~~~~l~~~~g------~~~~~~~~~~fG~g~~t~idlp~e~~~~~  365 (542)
T 3equ_A          298 YK--IGPSPVRDTHVYPSLDVRGI----MQKSSNVGTSKLSARFG------AEEMYDFYHELGIGVRMHSGFPGETAGLL  365 (542)
T ss_dssp             EE--ETTEEECCSSCCSEEEHHHH----HHHTCHHHHHHHHTTSC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC
T ss_pred             CC--CCCCCCCCCCCCCCCCHHHH----HHCCCEEHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             53--44321123367784248998----54174515457888729------58899999974998656899875434543


Q ss_pred             ----------------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEE----------------EE---C
Q ss_conf             ----------------62222569999999898763123311012302000-174478----------------60---1
Q gi|254780435|r  160 ----------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKY----------------PN---T  203 (336)
Q Consensus       160 ----------------~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~----------------~N---~  203 (336)
                                      ..+...|+-.|+.....+..+ ..+..-.-.+... ..+...                .+   +
T Consensus       366 ~~~~~~~~~~~~~~~~Gqg~~~Tplq~a~~~a~iaN~-G~~~~p~~v~~i~~~~~~~~~~~~~a~~i~~~l~~Vv~~~GT  444 (542)
T 3equ_A          366 RNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHD-GVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGT  444 (542)
T ss_dssp             CCGGGCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT-TEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSS
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEEEEC-CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEECCCCC
T ss_conf             4433467311223204776568889985552325208-789987654420278775324477899999899863727981


Q ss_pred             CCCCCCCCC-EEEEEEECCHHH--------H--HEEEEEEEEC-CEEEEEEEECCCCH------HHHHHHHHHHHHHHHH
Q ss_conf             456566897-115332124112--------0--0023456428-86899998378986------6789999999999985
Q gi|254780435|r  204 NWAVGTFLG-ADGMKTGFTCAS--------G--FNIVASAIQG-DQSLIAVILGALDR------NTRNKVSASLLSMGFY  265 (336)
Q Consensus       204 N~ll~~~~g-v~G~KTG~t~~A--------G--~~lv~~a~~~-g~~li~Vvlg~~~~------~~r~~~~~~Ll~~~f~  265 (336)
                      -... ..+| -.++|||+....        .  .-|++.+-.+ .+-.++|++..+..      ..-..-.+++++..++
T Consensus       445 g~~a-~~~g~~vaGKTGTAq~~~~g~~~~~~~~awFvGy~P~~~p~~av~V~v~~~~~~g~~G~~~AaPi~~~i~~~~l~  523 (542)
T 3equ_A          445 GTAG-AVDGFDVGAKTGTARKFVNGRYADNKHVATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLN  523 (542)
T ss_dssp             CGGG-CCTTSCCEEEEEEC-----------CCEEEEEEEESSSSCCEEEEEEEESCCSSCCCHHHHTHHHHHHHHHHHHH
T ss_pred             EEEC-CCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8720-579954899920001567885578984699999988799859999999428989875678999999999999999


Q ss_pred             HC
Q ss_conf             14
Q gi|254780435|r  266 NK  267 (336)
Q Consensus       266 ~f  267 (336)
                      -+
T Consensus       524 ~~  525 (542)
T 3equ_A          524 IL  525 (542)
T ss_dssp             HT
T ss_pred             HC
T ss_conf             76


No 62 
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=98.47  E-value=1.2e-05  Score=52.63  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=79.3

Q ss_pred             CEEEEEECCCCEEEEE-------EC--------CCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCEEEEC-HHHHHCCC
Q ss_conf             5689999789629776-------43--------998307526989999999-9851357777876603517-87720036
Q gi|254780435|r   29 PYYTLLDTNTGHVIAE-------NY--------PDHPWNPASLTKLMTAYV-VFSFLKEKKAMLTTPITIS-KNASEYPP   91 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~-------kn--------~~~~~~~AS~tKlmTa~~-~~~~i~~g~~~ld~~v~vs-~~~~~~~~   91 (336)
                      -++++||..||+||.-       .|        ....++|+|+-|.+|+|. ++|   +|.+..+..+... ......++
T Consensus        66 ~a~vv~d~~TG~IlA~vg~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~~aaale---~g~~~~~~~~~~~~~~~~~~~~  142 (390)
T 2v2f_F           66 VASTVVDVSNGKVIAQLGARHQASNVSFGTNQAVETNRDWGSAMKPITDYAPAIE---YGVYDSTATMVNDIPYNYPGTS  142 (390)
T ss_dssp             EEEEEEETTTTEEEEEECCCC-----CCCCCTTTCCCSCCGGGGHHHHTHHHHHH---TTSCSBTTCEEEESCEECTTSS
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCCCCCC
T ss_conf             8999998899949999967877767655643222056688741779999999997---6986664057526761015799


Q ss_pred             C---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC----CCC--CCC
Q ss_conf             6---4434510123467776767774235899999764011178999999999987098353441235----764--622
Q gi|254780435|r   92 S---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH----GVV--QHG  162 (336)
Q Consensus        92 s---~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~----Gl~--~~~  162 (336)
                      .   +..-...-.+++++.    |..|.|-.+.-|++.+|      .+.+-+.++.+|+..-......    ++.  ..+
T Consensus       143 ~~~~n~~~~~~G~vtl~~A----l~~S~N~~~~~l~~~~G------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  212 (390)
T 2v2f_F          143 TPVYNWDRAYFGNITLQYA----LQQSRNVTAVETLNKVG------LDRAKTFLNGLGIDYPSMHYANAISSNTTESNKQ  212 (390)
T ss_dssp             CEECCTTSCCCEEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHTTTCCCSSCCGGGGSCSCSSCCCTT
T ss_pred             CCCCCCCCCCCCCEEHHHH----HHHCCHHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             8743079985774229999----98633037889987539------2789999998299987644442223211105864


Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             22569999999898763
Q gi|254780435|r  163 HYTTARDMAILSWRIKT  179 (336)
Q Consensus       163 ~~tTa~Dla~l~~~~~~  179 (336)
                      .-.|+-+|+.....+..
T Consensus       213 ~~vtplqma~ayaaiaN  229 (390)
T 2v2f_F          213 YGASSEKMAAAYAAFAN  229 (390)
T ss_dssp             SSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHC
T ss_conf             04589999999999864


No 63 
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=98.47  E-value=2.4e-05  Score=50.72  Aligned_cols=141  Identities=15%  Similarity=0.165  Sum_probs=89.4

Q ss_pred             CCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH
Q ss_conf             785689999789629776439---------------------98307526989999999985135777787660351787
Q gi|254780435|r   27 KLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN   85 (336)
Q Consensus        27 ~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~   85 (336)
                      ...++++||..||+||.--+.                     ...++|+|+.|.+|+..+++   +|.++.++.+.....
T Consensus       230 ~~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle---~g~~~~~~~~~~~~~  306 (564)
T 3oc2_A          230 KAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALA---SGRWKPSDIVDVYPG  306 (564)
T ss_dssp             CCEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHH---TTSCCTTCEEECTTS
T ss_pred             CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCC
T ss_conf             50269997268883887237898664321246846777577618678863577899999997---797256426752786


Q ss_pred             HHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC----CC
Q ss_conf             720036--644345101234677767677742358999997640111789999999999870983534412-35----76
Q gi|254780435|r   86 ASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-AH----GV  158 (336)
Q Consensus        86 ~~~~~~--s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n-~~----Gl  158 (336)
                      ....+.  ..-.-.....++++++    +..|.|....-+++.++      .+.|.+.++.+|+....-.+ |.    .+
T Consensus       307 ~~~~g~~~~~~~~~~~g~~~l~~a----l~~S~Nv~f~~l~~~lg------~~~~~~~~~~fG~g~~~~id~p~~~~~~~  376 (564)
T 3oc2_A          307 TLQIGRYTIRDVSRNSRQLDLTGI----LIKSSNVGISKIAFDIG------AESIYSVMQQVGLGQDTGLGFPGERVGNL  376 (564)
T ss_dssp             EEEETTEEEECSCCCCSEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC
T ss_pred             CEECCCCEEECCCCCCCCHHHHHH----HHCCCCHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             253587102013234552021110----12166719999999875------89999999977998777999742215777


Q ss_pred             C---------------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             4---------------622225699999998987631
Q gi|254780435|r  159 V---------------QHGHYTTARDMAILSWRIKTD  180 (336)
Q Consensus       159 ~---------------~~~~~tTa~Dla~l~~~~~~~  180 (336)
                      +               ..+...|+-.||.....+..+
T Consensus       377 ~~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~iAN~  413 (564)
T 3oc2_A          377 PNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALAND  413 (564)
T ss_dssp             CCCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             7644322332002213887346799999988762279


No 64 
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A*
Probab=98.33  E-value=9e-05  Score=47.23  Aligned_cols=202  Identities=18%  Similarity=0.111  Sum_probs=108.6

Q ss_pred             CEEEEEECCCCEEEEEECC------------CCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCEEEECHHHHHCCCCCCC
Q ss_conf             5689999789629776439------------983075269899999999851357777-876603517877200366443
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENYP------------DHPWNPASLTKLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNST   95 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn~------------~~~~~~AS~tKlmTa~~~~~~i~~g~~-~ld~~v~vs~~~~~~~~s~~~   95 (336)
                      -+.+++|..||+||.=-+.            +.+++|+|+.|..+.+.++++   |.. ++++.+.-.+.....++...+
T Consensus       419 gA~Vv~Dp~TGeIlAmvGg~~~~~~~fNra~~a~r~pGSt~KP~~y~aAL~~---g~~~~~~t~~~D~p~~~~~~~g~~~  495 (751)
T 3fwm_A          419 TAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ---PKIYRLNTWIADAPIALRQPNGQVW  495 (751)
T ss_dssp             EEEEEEETTTCBEEEEECSSSCSSCSSCHHHHCCEECGGGGHHHHHHHHHTC---TTTCCTTCEEECSCCCEECSSSCEE
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHC---CCCCCCCEEECCCCEEEECCCCCCC
T ss_conf             5899986899978999644423445555000134455554541789999973---8874453374267637757998531


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCCCCCCCCCC
Q ss_conf             --------451012346777676777423589999976401117899999999998709835344-12357646222256
Q gi|254780435|r   96 --------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-MNAHGVVQHGHYTT  166 (336)
Q Consensus        96 --------l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-~n~~Gl~~~~~~tT  166 (336)
                              ....-.+++++.    +..|.|-++.-|+..+|      ++.+-+.++++|+..... ..|+-. -...-.|
T Consensus       496 ~p~n~d~~~~~~G~v~l~~A----L~~S~N~~~v~l~~~lG------~~~~~~~~~k~Gi~~~~~~~~ps~~-lG~~~vT  564 (751)
T 3fwm_A          496 SPQNDDRRYSESGRVMLVDA----LTRSMNVPTVNLGMALG------LPAVTETWIKLGVPKDQLHPVPAML-LGALNLT  564 (751)
T ss_dssp             CCCCTTSCCCTTSEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCCGGGCCCSGGGG-GTCCEEC
T ss_pred             CCCCCCCCCCCCCCEEHHHH----HHHHHHHHHHHHHHHHC------HHHHHHHHHHCCCCCCCCCCCCHHH-CCCCCCC
T ss_conf             78667766578762314334----34023599999988628------0899999998499855678980665-3886257


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEEEE----------------CCCCC-------------CCCCC-EEE
Q ss_conf             9999999898763123311012302000-17447860----------------14565-------------66897-115
Q gi|254780435|r  167 ARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKYPN----------------TNWAV-------------GTFLG-ADG  215 (336)
Q Consensus       167 a~Dla~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~~N----------------~N~ll-------------~~~~g-v~G  215 (336)
                      +-+||.....+..+ =.+.+-.-.+.+. ..+..+..                .+.+|             ...++ -.+
T Consensus       565 PlqmA~aYatiANg-G~~~~P~~I~~I~d~dG~vi~~~~~~~~~vis~~tA~~v~~~M~~VV~~GTg~~~~~~~~~~~vA  643 (751)
T 3fwm_A          565 PIEVAQAFQTIASG-GNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLA  643 (751)
T ss_dssp             HHHHHHHHHHHHTT-SEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTSTTHHHHHHSGGGCCE
T ss_pred             HHHHHHHHHHHHCC-CEEECCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEE
T ss_conf             88988899999749-85835689999998999887036897763689999999999999875556730011238997599


Q ss_pred             EEEECCHHHHH-EEEEEEEECCEEEEEEEECCCC
Q ss_conf             33212411200-0234564288689999837898
Q gi|254780435|r  216 MKTGFTCASGF-NIVASAIQGDQSLIAVILGALD  248 (336)
Q Consensus       216 ~KTG~t~~AG~-~lv~~a~~~g~~li~Vvlg~~~  248 (336)
                      +|||+|+...- -+|+.   +++-.++|.+|.++
T Consensus       644 GKTGTT~~~rDaWFvG~---tp~~~~~VWvG~Dd  674 (751)
T 3fwm_A          644 GKTGTTNNNVDTWFAGI---DGSTVTITWVGRDN  674 (751)
T ss_dssp             EEEEECGGGSEEEEEEE---CSSEEEEEEEECTT
T ss_pred             EECCCCCCCCEEEEEEC---CCCEEEEEEEECCC
T ss_conf             98863799705999985---89969999997789


No 65 
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=97.78  E-value=0.00092  Score=41.08  Aligned_cols=140  Identities=16%  Similarity=0.140  Sum_probs=88.0

Q ss_pred             CCCEEEEEECCCCEEEEEEC--------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             78568999978962977643--------------------------------9983075269899999999851357777
Q gi|254780435|r   27 KLPYYTLLDTNTGHVIAENY--------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA   74 (336)
Q Consensus        27 ~a~~~i~~d~~tG~iL~~kn--------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~   74 (336)
                      ...+++++|..||+||.--+                                ....++|+|+-|++|+..+|+   .|.+
T Consensus       321 ~~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i  397 (646)
T 1vqq_A          321 DYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTL  397 (646)
T ss_dssp             SSEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSS
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCC
T ss_conf             3352899824667067775057655442114653122122335621455555451113454201788999997---6997


Q ss_pred             CCCCEEEECHHHHHCC----CCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             8766035178772003----6644-3451-01234677767677742358999997640111789999999999870983
Q gi|254780435|r   75 MLTTPITISKNASEYP----PSNS-TFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS  148 (336)
Q Consensus        75 ~ld~~v~vs~~~~~~~----~s~~-~l~~-g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~  148 (336)
                      ++++.+..+...+..+    +... .... .-.+++++    .+..|+|....-||..++.      +.+-+.|+++|+-
T Consensus       398 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v~l~~----al~~S~N~~f~~la~~lg~------~~l~~~a~~fG~g  467 (646)
T 1vqq_A          398 DDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ----AIESSDNIFFARVALELGS------KKFEKGMKKLGVG  467 (646)
T ss_dssp             CTTCEEEECSSEECSSGGGTTCCEECSSCCCEEEEHHH----HHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTTT
T ss_pred             CCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHCCCC
T ss_conf             99987994784143467767643346678887232120----3057878999999987638------8999888763689


Q ss_pred             CCE-EE--C-CCCCCC---------------CC-CCCCHHHHHHHHHHHHH
Q ss_conf             534-41--2-357646---------------22-22569999999898763
Q gi|254780435|r  149 ATH-FM--N-AHGVVQ---------------HG-HYTTARDMAILSWRIKT  179 (336)
Q Consensus       149 ~T~-f~--n-~~Gl~~---------------~~-~~tTa~Dla~l~~~~~~  179 (336)
                      ... +.  . ..+++.               .+ -..|+-.||.+...++.
T Consensus       468 ~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v~vTPLqmA~ayaaiAN  518 (646)
T 1vqq_A          468 EDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALEN  518 (646)
T ss_dssp             SCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSCBBCHHHHHHHHHGGGT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             888866655434467766787522422046777512379999999999974


No 66 
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=96.75  E-value=0.0021  Score=38.96  Aligned_cols=138  Identities=21%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             EEEEEECCCCEEEEE------------ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC---CC
Q ss_conf             689999789629776------------439983075269899999999851357777876603517877200366---44
Q gi|254780435|r   30 YYTLLDTNTGHVIAE------------NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NS   94 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~------------kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s---~~   94 (336)
                      ++++||..||+||.=            .-...+++|+|+-|..+++.++.+  .+....+..+.-.. ....++.   +.
T Consensus       303 a~vv~d~~TG~IlAmvgg~~~~~~~~~~~~~~~r~pGStfKp~~~~aa~~e--~~~~~~~~~~~~~~-~~~~~~~~~~N~  379 (669)
T 2olv_A          303 GATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIE--NMKWATNHAIQDES-SYQVDGSTFRNY  379 (669)
T ss_dssp             EEEEEETTTCBEEEEESSTTCCTTTSCCTTSSCEECGGGGHHHHTHHHHHH--HHCCCTTBEEECCS-CEESSSCEECCS
T ss_pred             EEEEEECCCCCEEEEECCCCCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf             899997899918999627741000330545220456643331245444422--66432221134666-543467654368


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC---CCCCCCCCCCCHHHHH
Q ss_conf             3451012346777676777423589999976401117899999999998709835344123---5764622225699999
Q gi|254780435|r   95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA---HGVVQHGHYTTARDMA  171 (336)
Q Consensus        95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~---~Gl~~~~~~tTa~Dla  171 (336)
                      .-+-.-.+++++.    |..|.|-.++-++..++-  +.+++.+.+.++.+|+....-.+|   -|+  ...-.|+-+|+
T Consensus       380 ~~~~~G~vtl~~A----l~~S~N~~av~l~~~lg~--~~g~~~~~~~~~~~Gi~~~~~~~~~~~lg~--g~~~vtplqma  451 (669)
T 2olv_A          380 DTKSHGTVSIYDA----LRQSFNIPALKAWQSVKQ--NAGNDAPKKFAAKLGLNYEGDIGPSEVLGG--SASEFSPTQLA  451 (669)
T ss_dssp             SCSCCCEEEHHHH----HHTTCHHHHHHHHHHHHH--HTCTTHHHHHHHTTTCCCSSCCCHHHHTTC--TTCEECHHHHH
T ss_pred             CCCCCCCHHHHHH----HHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCHHHCCC--CCCCCCHHHHH
T ss_conf             8876675489999----874862899999999988--764789999999809995234674010357--63324688999


Q ss_pred             HHHHHHH
Q ss_conf             9989876
Q gi|254780435|r  172 ILSWRIK  178 (336)
Q Consensus       172 ~l~~~~~  178 (336)
                      .....+.
T Consensus       452 ~ayat~A  458 (669)
T 2olv_A          452 SAFAAIA  458 (669)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999986


No 67 
>2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B
Probab=96.72  E-value=0.025  Score=32.33  Aligned_cols=138  Identities=16%  Similarity=0.031  Sum_probs=76.1

Q ss_pred             CEEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCC
Q ss_conf             568999978962977643------------998307526989999-9999851357777876603517877200366443
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNST   95 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmT-a~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~   95 (336)
                      -++++||..||+||.=-.            .+.+++|+|+.|-++ ...++|   +|....++.+.-++... .++....
T Consensus       125 ~a~Vv~d~~TG~IlAmvgg~~y~~~~~Nra~~~~rqPGStfKP~v~yaaAle---~g~~~~~t~~~d~p~~~-~~~~~~~  200 (494)
T 2bg1_A          125 VGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAID---QGLMGSETILSNYPTNF-ANGNPIM  200 (494)
T ss_dssp             EEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHH---TTSCCTTCEEECSCCBC-TTSCBCC
T ss_pred             EEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCEE-CCCCCEE
T ss_conf             9999998999909999989899977656757088687223999999999997---69999755557887211-3667424


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCHHHHH
Q ss_conf             4---5101234677767677742358999997640111789999999999870983534412357646-22225699999
Q gi|254780435|r   96 F---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMA  171 (336)
Q Consensus        96 l---~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-~~~~tTa~Dla  171 (336)
                      .   .-.-.+++++    .|..|.|-.+.-+++.++-.--.+    -..++.+|...-.+..++ +.- ...-.|+-+|+
T Consensus       201 ~~~~~~~G~vtl~~----al~~S~Ni~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~s-~a~Gg~~~vTplqma  271 (494)
T 2bg1_A          201 YANSKGTGMMTLGE----ALNYSWNIPAYWTYRMLRENGVDV----KGYMEKMGYEIPEYGIES-LPMGGGIEVTVAQHT  271 (494)
T ss_dssp             BTTBCCCCEEEHHH----HHHHTCSHHHHHHHHHHHHTTCCH----HHHHHHTTCCCSCCCCTT-GGGTTTCCBCHHHHH
T ss_pred             CCCCCCCCEEEHHH----HHHHCCCHHHHHHHHHHCCCCHHH----HHHHHCCCCCCCCCCCCC-HHCCCCCCCCHHHHH
T ss_conf             46787874468999----986374618888898854442433----444413577887666221-001687554206888


Q ss_pred             HHHHHHHH
Q ss_conf             99898763
Q gi|254780435|r  172 ILSWRIKT  179 (336)
Q Consensus       172 ~l~~~~~~  179 (336)
                      .....+..
T Consensus       272 ~ayat~AN  279 (494)
T 2bg1_A          272 NGYQTLAN  279 (494)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
T ss_conf             99999972


No 68 
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=94.99  E-value=0.17  Score=27.33  Aligned_cols=138  Identities=17%  Similarity=0.031  Sum_probs=77.1

Q ss_pred             CEEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCC-
Q ss_conf             568999978962977643------------998307526989999-999985135777787660351787720036644-
Q gi|254780435|r   29 PYYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-   94 (336)
Q Consensus        29 ~~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmT-a~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~-   94 (336)
                      -++++||..||+||.=-.            .+.+++|+|.+|-.. ...++   ++|....++.+.-+.... .++... 
T Consensus       351 ~a~Vv~Dp~TG~IlAmvGg~~~~~~~~n~a~~a~rqpGSs~Kp~~~yaaAl---e~G~~~~~t~~~d~~~~~-~~~~~~~  426 (720)
T 2jch_A          351 VGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAI---DQGLMGSETILSNYPTNF-ANGNPIM  426 (720)
T ss_dssp             EEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHH---HTTSCCTTCEEECSCCBC-TTSCBCC
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH---HCCCCCCCEEEECCCCCC-CCCCCCC
T ss_conf             679999889997889842785001123220024444013220257799998---649999861773278333-4688531


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC-CCCCHHHHH
Q ss_conf             --34510123467776767774235899999764011178999999999987098353441235764622-225699999
Q gi|254780435|r   95 --TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMA  171 (336)
Q Consensus        95 --~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~-~~tTa~Dla  171 (336)
                        .-+-.-.+|+++.|    ..|.|-++.-+++.++..--.    .-..++.+|.....+..+ .+.-.+ .-.|+-+|+
T Consensus       427 ~~~~~~~G~vtl~~Al----~~S~Nv~a~~~~~~~~~~g~~----~~~~~~~~G~~~~~~~~~-slalGg~~~vTplqma  497 (720)
T 2jch_A          427 YANSKGTGMMTLGEAL----NYSWNIPAYWTYRMLRENGVD----VKGYMEKMGYEIPEYGIE-SLPMGGGIEVTVAQHT  497 (720)
T ss_dssp             BTTBCCCSEEEHHHHH----HHTCSHHHHHHHHHHHHTTCC----HHHHHHHTTCCCSCCCCT-TGGGTTTCCBCHHHHH
T ss_pred             CCCCCCCCCCCHHHHH----HHCCCHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCCC-CHHHHCCCCCCCHHHH
T ss_conf             4666678733288998----846774589999985011156----999999739986555653-3234122342003422


Q ss_pred             HHHHHHHH
Q ss_conf             99898763
Q gi|254780435|r  172 ILSWRIKT  179 (336)
Q Consensus       172 ~l~~~~~~  179 (336)
                      .....+..
T Consensus       498 ~aYat~AN  505 (720)
T 2jch_A          498 NGYQTLAN  505 (720)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
T ss_conf             13003114


No 69 
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A*
Probab=55.66  E-value=9.1  Score=16.75  Aligned_cols=40  Identities=10%  Similarity=0.010  Sum_probs=33.7

Q ss_pred             EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8999978962977643998307526989999999985135
Q gi|254780435|r   31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK   70 (336)
Q Consensus        31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~   70 (336)
                      +|.+=.-.|++...-+++.++++-|++|++|..++++..-
T Consensus        53 giai~t~dG~~~~~GD~~~~FsiQSisK~f~l~~al~~~G   92 (330)
T 1mki_A           53 GICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRG   92 (330)
T ss_dssp             EEEEECTTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf             8999937995896688588654799899999999999879


No 70 
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=47.83  E-value=12  Score=15.99  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8999978962977643998307526989999999985135
Q gi|254780435|r   31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK   70 (336)
Q Consensus        31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~   70 (336)
                      +|.+=...|++.-.-+.+.++++-|++|.++..++++.+-
T Consensus        42 giai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~G   81 (310)
T 1u60_A           42 AVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVG   81 (310)
T ss_dssp             EEEEEETTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf             9999946990896379898770899999999999997659


No 71 
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426}
Probab=46.97  E-value=12  Score=15.91  Aligned_cols=40  Identities=13%  Similarity=0.039  Sum_probs=32.8

Q ss_pred             EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8999978962977643998307526989999999985135
Q gi|254780435|r   31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK   70 (336)
Q Consensus        31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~   70 (336)
                      ++.+-.-.|+++..-+.+.++++-|++|..+..++++.+-
T Consensus        41 giai~t~dG~~~~~GD~~~~FsiqSisK~f~~~~al~~~G   80 (308)
T 2pby_A           41 SIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRG   80 (308)
T ss_dssp             EEEEEETTTEEEEEESTTCCEECTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf             8999937997895478888676899999999999999879


No 72 
>3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens}
Probab=40.14  E-value=16  Score=15.26  Aligned_cols=40  Identities=15%  Similarity=0.029  Sum_probs=32.9

Q ss_pred             EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8999978962977643998307526989999999985135
Q gi|254780435|r   31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK   70 (336)
Q Consensus        31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~   70 (336)
                      ++.+=...|++..--+.+.++++-|++|..+..++++.+-
T Consensus        44 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~lal~~~G   83 (315)
T 3czd_A           44 GVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLG   83 (315)
T ss_dssp             EEEEEETTSCEEEEESTTSCEECGGGGHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf             8999917995884578588633899999999999998768


No 73 
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=37.92  E-value=11  Score=16.14  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf             94899999999999850035787544785689999789629776439983
Q gi|254780435|r    1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP   50 (336)
Q Consensus         1 mk~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~   50 (336)
                      |||.++.+.++.+..+++....+.. .....+.++..-+.|.|....+..
T Consensus         1 mkk~l~~~~~~~~~~~~~~p~~~~~-~p~~~~~~~~~~~pV~F~H~~H~~   49 (130)
T 2a3m_A            1 MRKSLFAVMVLALVAAFALPVIAAE-APADGLKMENTKMPVIFNHSSHSS   49 (130)
T ss_dssp             -----------------------CC-CCCSCEEECSSSSCEEECGGGGTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCEECCHHHHCC
T ss_conf             9049999999999999998887633-876333335788986457789767


No 74 
>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=37.36  E-value=18  Score=15.00  Aligned_cols=40  Identities=20%  Similarity=0.062  Sum_probs=33.3

Q ss_pred             EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8999978962977643998307526989999999985135
Q gi|254780435|r   31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK   70 (336)
Q Consensus        31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~   70 (336)
                      +|.+=.-.|++...-+.+.++++-|++|.++..++++.+-
T Consensus        40 giai~t~dG~~~~~GD~~~~FsIQSiSKpf~~~lAl~~~G   79 (456)
T 3ih8_A           40 GIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRG   79 (456)
T ss_dssp             EEEEECSSSCEEEEESTTCCEECGGGGHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEECCCCCCCEECHHHHHHHHHHHHHHHHC
T ss_conf             8999925997895678899671003899999999999879


No 75 
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=34.03  E-value=17  Score=15.12  Aligned_cols=14  Identities=21%  Similarity=0.626  Sum_probs=8.2

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             94899999999999
Q gi|254780435|r    1 MRQFLVIIAMAMLS   14 (336)
Q Consensus         1 mk~~~~~~~~~~~~   14 (336)
                      |||+++++++.+++
T Consensus         1 mkK~~i~f~~~l~~   14 (186)
T 2f2f_C            1 MKKYLLSFLLSMIL   14 (186)
T ss_dssp             --------------
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             93248999999997


No 76 
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=29.94  E-value=5  Score=18.33  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf             74235899999-76401117899999999998709835344123
Q gi|254780435|r  113 VKSANDIAVAI-AESLCKTEKKFVQHMNNTSKNLGLSATHFMNA  155 (336)
Q Consensus       113 i~S~Ndaa~aL-Ae~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~  155 (336)
                      --+||.||+.+ ++.+.      -+.|.+-|+|+|+..|-|.-|
T Consensus        34 ~f~GNpaaVv~~~~~l~------~~~mq~IA~e~n~sET~Fv~~   71 (298)
T 1xub_A           34 PLEGNPVAVFFDADDLP------PAQMQRIAREMNLSESTFVLK   71 (298)
T ss_dssp             TTSSEEEEEECSGGGSC------HHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCCCCEEEEECCCCCC------HHHHHHHHHHHCCCEEEEEEC
T ss_conf             99986159996898999------999999999869966999855


No 77 
>1ksh_B Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase delta-subunit...; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B*
Probab=27.25  E-value=26  Score=13.96  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=15.7

Q ss_pred             EEEEEECCCCEEEEEECCCCC
Q ss_conf             689999789629776439983
Q gi|254780435|r   30 YYTLLDTNTGHVIAENYPDHP   50 (336)
Q Consensus        30 ~~i~~d~~tG~iL~~kn~~~~   50 (336)
                      .-.+=|++||+||++.+.+.-
T Consensus        21 ~~~iRDaeTG~vlwe~~~d~~   41 (152)
T 1ksh_B           21 WMNLRDAETGKILWQGTEDLS   41 (152)
T ss_dssp             EEEEEETTTTEEEEEECSCTT
T ss_pred             EEEEEECCCCEEEEEECCCCC
T ss_conf             888650776808986067877


Done!