Query gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 336 No_of_seqs 171 out of 2246 Neff 6.8 Searched_HMMs 23785 Date Mon May 30 11:40:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780435.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ita_A D-alanyl-D-alanine carb 100.0 0 0 566.6 28.1 316 19-334 4-330 (352) 2 3hun_A Penicillin-binding prot 100.0 0 0 570.6 24.2 254 24-277 66-347 (453) 3 1z6f_A Penicillin-binding prot 100.0 0 0 565.1 26.5 316 19-334 8-334 (363) 4 3a3j_A PBP5; penicillin bindin 100.0 0 0 556.0 26.7 312 21-334 2-324 (344) 5 1xp4_A D-alanyl-D-alanine carb 100.0 0 0 552.0 27.2 315 19-334 5-351 (379) 6 3mfd_A D-alanyl-D-alanine carb 100.0 0 0 543.4 24.5 250 21-279 2-255 (334) 7 1tvf_A PBP4, penicillin bindin 100.0 0 0 535.1 25.6 252 26-277 32-311 (369) 8 1es5_A DD-transpeptidase; peni 100.0 0 0 504.5 22.9 240 22-265 2-261 (262) 9 2bcf_A Probable D-alanyl-D-ala 100.0 0 0 499.8 22.7 251 19-276 10-269 (276) 10 1w7f_A Beta-lactamase; hydrola 100.0 2.7E-39 1.1E-43 257.6 16.9 209 30-247 62-279 (307) 11 2cc1_A Beta-lactamase, penicil 100.0 2.5E-39 1.1E-43 257.7 12.3 227 30-263 19-253 (262) 12 2qpn_A Beta-lactamase GES-1; A 100.0 1.5E-38 6.2E-43 253.1 14.2 212 30-248 40-260 (287) 13 3dw0_A Class A carbapenemase K 100.0 1E-37 4.2E-42 248.0 16.7 229 30-265 45-289 (294) 14 1m40_A TEM-1, beta-lactamase T 100.0 5.2E-37 2.2E-41 243.7 18.9 211 28-245 17-238 (263) 15 3m6b_A Beta-lactamase, penicil 100.0 2.2E-38 9.2E-43 252.1 11.7 214 28-247 15-239 (265) 16 2j9o_A TLL2115 protein; penici 100.0 2.7E-36 1.1E-40 239.3 18.2 232 30-268 37-272 (298) 17 1n9b_A Penicillinase, beta-lac 100.0 1.8E-36 7.6E-41 240.4 14.3 236 26-268 15-264 (265) 18 2wk0_A Beta-lactamase; hydrola 100.0 1.4E-35 5.7E-40 235.0 17.1 228 30-266 20-262 (265) 19 2p74_A Beta-lactamase CTX-M-9A 100.0 2.6E-35 1.1E-39 233.3 17.9 209 30-245 21-238 (263) 20 3c5a_A Class A carbapenemase K 100.0 7.5E-36 3.1E-40 236.6 14.8 210 30-246 20-239 (264) 21 1o7e_A L2 beta lactamase; hydr 100.0 2.5E-35 1.1E-39 233.4 13.3 231 30-264 32-275 (276) 22 3p09_A Beta-lactamase; structu 100.0 5.5E-36 2.3E-40 237.4 9.8 236 27-266 36-287 (290) 23 1bue_A Protein (imipenem-hydro 100.0 8.1E-35 3.4E-39 230.3 13.4 210 30-245 20-239 (265) 24 1hzo_A Beta-lactamase; mixed a 100.0 1E-33 4.4E-38 223.5 17.9 230 30-266 22-266 (271) 25 1g6a_A Beta-lactamase PSE-4; c 100.0 2E-32 8.4E-37 215.7 20.2 238 26-270 19-269 (271) 26 1bsg_A Beta lactamase, penicil 100.0 5.3E-33 2.2E-37 219.3 16.0 212 30-248 19-243 (266) 27 3lez_A Beta-lactamase; antibio 100.0 6.9E-33 2.9E-37 218.6 15.1 212 27-247 13-235 (260) 28 1e25_A Extended-spectrum beta- 100.0 7.6E-33 3.2E-37 218.3 13.2 234 28-268 18-277 (282) 29 3cjm_A Putative beta-lactamase 100.0 9.2E-32 3.9E-36 211.7 18.1 219 30-269 53-281 (282) 30 1ghp_A Beta-lactamase, penicil 100.0 7.8E-31 3.3E-35 206.0 15.7 232 26-267 11-258 (258) 31 1alq_A CP254 beta-lactamase; h 100.0 6.6E-29 2.8E-33 194.3 12.2 191 30-230 61-261 (266) 32 2wuq_A BLAB, beta-lactamase re 99.9 4.8E-23 2E-27 158.6 15.6 208 29-245 22-282 (318) 33 3a3d_A PBP4, penicillin-bindin 99.7 6.1E-15 2.5E-19 109.2 20.9 141 101-244 270-421 (453) 34 1w5d_A Penicillin-binding prot 99.6 9.1E-14 3.8E-18 102.0 17.8 140 100-246 284-440 (462) 35 2ex2_A Penicillin-binding prot 99.6 3E-13 1.3E-17 98.9 16.7 142 101-245 273-426 (458) 36 1w79_A D-alanyl-D-alanine carb 99.5 2.8E-12 1.2E-16 92.9 18.2 135 103-245 286-437 (489) 37 3hbr_A OXA-48; class D beta-la 99.3 9.9E-11 4.2E-15 83.6 16.0 185 30-245 43-239 (265) 38 2iwb_A Methicillin resistance 99.2 1.3E-09 5.5E-14 76.7 15.1 186 29-244 24-220 (246) 39 1k38_A Penicillinase, beta-lac 99.2 2.8E-09 1.2E-13 74.7 16.6 207 29-267 21-239 (254) 40 1nrf_A Regulatory protein BLAR 99.2 1.3E-09 5.4E-14 76.7 14.8 183 30-244 36-231 (262) 41 1zkj_A CMY-10, extended-spectr 99.1 1.8E-08 7.4E-13 69.8 16.6 137 36-179 34-241 (359) 42 2ffy_A Beta-lactamase; AMPC, d 99.1 2.2E-08 9.1E-13 69.3 16.7 135 37-180 31-237 (358) 43 2wzx_A Beta-lactamase; inhibit 99.0 3.3E-08 1.4E-12 68.2 16.8 135 36-180 33-242 (371) 44 3i7j_A Beta-lactamase MB2281C; 99.0 3.2E-09 1.3E-13 74.4 11.5 140 29-179 15-165 (280) 45 1k55_A Beta lactamase OXA-10; 99.0 3.7E-08 1.5E-12 67.9 16.4 185 29-245 19-219 (246) 46 3g4p_A Beta-lactamase OXA-24; 99.0 4.2E-08 1.8E-12 67.5 16.6 188 29-244 22-218 (244) 47 2qmi_A PBP related beta-lactam 99.0 6.7E-09 2.8E-13 72.4 12.4 136 36-180 27-254 (447) 48 3isg_A Penicillinase, beta-lac 99.0 5.6E-08 2.4E-12 66.8 16.6 190 29-244 17-223 (251) 49 1xkz_A Regulatory protein BLAR 99.0 6.8E-08 2.9E-12 66.3 16.4 189 29-244 31-227 (255) 50 2drw_A DAA, D-amino acid amida 99.0 3.2E-07 1.3E-11 62.2 19.1 132 46-179 51-261 (363) 51 1yqs_A D-alanyl-D-alanine carb 98.9 6.1E-08 2.6E-12 66.5 14.8 124 46-180 53-257 (349) 52 1ei5_A D-aminopeptidase, DAP; 98.9 1.1E-07 4.6E-12 65.0 15.1 220 29-266 23-332 (520) 53 1ci9_A ESTB, protein (carboxyl 98.9 3.1E-08 1.3E-12 68.3 11.0 46 36-81 43-101 (392) 54 3ozh_A Beta-lactamase/D-alanin 98.8 3E-07 1.3E-11 62.3 14.7 128 46-179 53-245 (351) 55 3hlc_A Transesterase, LOVD; al 98.7 1E-07 4.3E-12 65.2 10.3 151 27-180 48-308 (432) 56 2qz6_A Beta-lactamase; psychro 98.7 1.5E-07 6.2E-12 64.2 10.7 136 36-180 29-237 (358) 57 2dcf_A 6-aminohexanoate-dimer 98.7 1.7E-07 7E-12 63.9 9.7 140 29-179 83-285 (392) 58 3lo7_A PBPA, penicillin-bindin 98.5 7.7E-06 3.2E-10 53.7 15.5 138 28-180 151-351 (483) 59 2wad_A Penicillin-binding prot 98.5 4.8E-05 2E-09 48.9 19.1 143 29-179 343-537 (680) 60 1qme_A Penicillin-binding prot 98.5 2E-05 8.4E-10 51.2 16.8 136 29-179 241-422 (702) 61 3equ_A PBP-2, penicillin-bindi 98.5 2.6E-05 1.1E-09 50.5 17.3 225 26-267 221-525 (542) 62 2v2f_F Penicillin binding prot 98.5 1.2E-05 4.9E-10 52.6 14.9 138 29-179 66-229 (390) 63 3oc2_A Penicillin-binding prot 98.5 2.4E-05 1E-09 50.7 16.4 141 27-180 230-413 (564) 64 3fwm_A Penicillin-binding prot 98.3 9E-05 3.8E-09 47.2 16.6 202 29-248 419-674 (751) 65 1vqq_A Saupbp2A, penicillin-bi 97.8 0.00092 3.9E-08 41.1 13.0 140 27-179 321-518 (646) 66 2olv_A Penicillin-binding prot 96.8 0.0021 8.6E-08 39.0 5.4 138 30-178 303-458 (669) 67 2bg1_A PBP1B, penicillin-bindi 96.7 0.025 1.1E-06 32.3 10.8 138 29-179 125-279 (494) 68 2jch_A Penicillin-binding prot 95.0 0.17 7E-06 27.3 10.1 138 29-179 351-505 (720) 69 1mki_A Probable glutaminase YB 55.7 9.1 0.00038 16.8 4.8 40 31-70 53-92 (330) 70 1u60_A Probable glutaminase YB 47.8 12 0.00051 16.0 4.5 40 31-70 42-81 (310) 71 2pby_A Glutaminase; secsg, rik 47.0 12 0.00052 15.9 4.9 40 31-70 41-80 (308) 72 3czd_A Glutaminase kidney isof 40.1 16 0.00067 15.3 4.4 40 31-70 44-83 (315) 73 2a3m_A COG3005: nitrate/TMAO r 37.9 11 0.00048 16.1 1.6 49 1-50 1-49 (130) 74 3ih8_A Salt-tolerant glutamina 37.4 18 0.00074 15.0 4.7 40 31-70 40-79 (456) 75 2f2f_C CDT C, cytolethal diste 34.0 17 0.00071 15.1 2.0 14 1-14 1-14 (186) 76 1xub_A Phenazine biosynthesis 29.9 5 0.00021 18.3 -1.3 37 113-155 34-71 (298) 77 1ksh_B Retinal ROD rhodopsin-s 27.2 26 0.0011 14.0 3.2 21 30-50 21-41 (152) No 1 >3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A* Probab=100.00 E-value=0 Score=566.61 Aligned_cols=316 Identities=31% Similarity=0.356 Sum_probs=267.1 Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCCC Q ss_conf 3578754478568999978962977643998307526989999999985135777787660351787720------0366 Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPS 92 (336) Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~s 92 (336) ....+|.+.|++|+|||++||+|||+||+|+++||||+|||||+|+++|+++.|+++||++|++|++++. .++| T Consensus 4 ~~~~~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~~e~i~~~~~~l~~~v~vs~~a~~~~~~~~~~~s 83 (352) T 3ita_A 4 QTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSS 83 (352) T ss_dssp -CCCCCCCCSSEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGSTTTCGGGTTSS T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC T ss_conf 88889973215999999999979632590998622899999999999998763899978669946999851044556873 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH Q ss_conf 44345101234677767677742358999997640111789999999999870983534412357646222256999999 Q gi|254780435|r 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 (336) Q Consensus 93 ~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~ 172 (336) .++|++|+++|++|||++||++|+||||++|||+++||+++||++||++|++|||+||||.|||||++++|||||+||++ T Consensus 84 ~~~l~~g~~~tv~dLL~~~li~SaNdAA~aLA~~i~Gs~~~Fv~~MN~kAkelG~~~T~f~np~Gl~~~~~~tta~Dla~ 163 (352) T 3ita_A 84 VMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMAL 163 (352) T ss_dssp CCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCTTCBCCCSSCCCCTTCBBCHHHHHH T ss_pred EEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 35413899999999999988751529999998752899999999999999984899821557777787556346999999 Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCC-CCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHH Q ss_conf 98987631233110123020001744786014565668-97115332124112000234564288689999837898667 Q gi|254780435|r 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 (336) Q Consensus 173 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~-~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~ 251 (336) |++++++++|++..+++.+.+.+.++.+.|+|++|+.+ ++++|+|||||++||+||+++++|||+|+|+||||+++... T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~n~ll~~~~~~i~G~KTG~t~~aG~~lv~~a~~~g~~~i~Vvlg~~~~~~ 243 (352) T 3ita_A 164 LGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRI 243 (352) T ss_dssp HHHHHHHHCHHHHGGGGCCEEEETTEEEECCCGGGGCSSCEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEESSHHH T ss_pred HHHHHHHCCCCEEEEEEEEEEECCCEECCCCCCHHCCCCCEEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCHHH T ss_conf 99997336821077500678704861136767001167827556998874147860899998599069999967998778 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 89999999999985145320234554552---01455542346-543202113455432332113444454426811200 Q gi|254780435|r 252 RNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 (336) Q Consensus 252 r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 327 (336) ||.++++|+||+|++|....++.+..... .+.+....++. ...++..............+.........+|+++++ T Consensus 244 r~~d~~~Ll~~~f~~~~~~~~~~~~~~~~~~~V~~g~~~~v~l~~~~~~~~~lpk~~~~~~~~~i~~~~~~l~APVkkG~ 323 (352) T 3ita_A 244 RFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQ 323 (352) T ss_dssp HHHHHHHHHHHHHHHEEEECSSCTTCCSEEEEEESBSSSEEEEECGGGCCEEEETTCGGGEEEEEEESSSSEESCBCTTC T ss_pred HHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEECCCCCC T ss_conf 89999999999975348865301444443104753765389999788779999889756628999987883440568998 Q ss_pred ECCCEEC Q ss_conf 0133010 Q gi|254780435|r 328 LLKNKIT 334 (336) Q Consensus 328 ~~~~~i~ 334 (336) .+|+... T Consensus 324 ~VG~l~v 330 (352) T 3ita_A 324 VVGTIDF 330 (352) T ss_dssp EEEEEEE T ss_pred EEEEEEE T ss_conf 9999999 No 2 >3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* Probab=100.00 E-value=0 Score=570.60 Aligned_cols=254 Identities=27% Similarity=0.415 Sum_probs=239.0 Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCC Q ss_conf 544785689999789629776439983075269899999999851357777876603517877200----3664434510 Q gi|254780435|r 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKG 99 (336) Q Consensus 24 ~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g 99 (336) +...+++|||||++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++.. ++|+++|++| T Consensus 66 ~~~~a~sail~da~tG~iLy~KN~d~~~~pASlTKlMTa~l~le~i~~g~l~ld~~vtis~~a~~~~~~~~~S~~~l~~G 145 (453) T 3hun_A 66 SAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPG 145 (453) T ss_dssp CGGGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTCCCCCCCTT T ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCC T ss_conf 54457617999989994933578498858449999999999999986379882125668999998525888762145289 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCC Q ss_conf 1234677767677742358999997640111789999999999870983534412357646--------------22225 Q gi|254780435|r 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYT 165 (336) Q Consensus 100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~t 165 (336) +++|++|||++||++|+||||++|||+++||+++||++||++|++|||+||||.||||||+ ++|+| T Consensus 146 ~~~tv~dLL~~lli~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~Np~GL~~~~~~~~~~~~~~~~~~~~t 225 (453) T 3hun_A 146 QVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVT 225 (453) T ss_dssp CEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCTTCBCSSSSCSCHHHHGGGSCGGGTTCCCCBB T ss_pred CEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 79889999987677442799999999818989999999999999838988766678888764444345544433343051 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC----CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEE Q ss_conf 6999999989876312331101230200017447860145656----689711533212411200023456428868999 Q gi|254780435|r 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 (336) Q Consensus 166 Ta~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~----~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~ 241 (336) ||+||++|+++++++||+++++++...++++..++.|+|++|. .|+|+||+|||||++||+|||++++|||||+|+ T Consensus 226 TA~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~n~N~~l~~~~~~~~gvdGlKTG~T~~AG~~lv~sa~r~g~~lI~ 305 (453) T 3hun_A 226 TARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQ 305 (453) T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEE T ss_pred HHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEE T ss_conf 09999999999876373012101475000276564011235556656777742202112035755399999999989999 Q ss_pred EEECCCC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 9837898------66789999999999985145320234554 Q gi|254780435|r 242 VILGALD------RNTRNKVSASLLSMGFYNKTDRKKINYII 277 (336) Q Consensus 242 Vvlg~~~------~~~r~~~~~~Ll~~~f~~f~~~~~~~~~~ 277 (336) ||||+++ ...|+.++++||||||++|+...+..++. T Consensus 306 Vvlga~~~~~~~~~~~R~~d~~~Lldy~f~~f~~~~l~~kg~ 347 (453) T 3hun_A 306 VIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE 347 (453) T ss_dssp EEEEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC T ss_conf 996989866544488899999999999885126999854997 No 3 >1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A Probab=100.00 E-value=0 Score=565.13 Aligned_cols=316 Identities=27% Similarity=0.338 Sum_probs=268.2 Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCCC Q ss_conf 3578754478568999978962977643998307526989999999985135777787660351787720------0366 Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPS 92 (336) Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~s 92 (336) ..+.+|.+.|++|||||++||+|||+||+|+++||||+|||||+|+++|++++|+++|+++|++|++++. .++| T Consensus 8 ~~p~~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~~ASlTKlMTa~v~le~i~~g~l~~~~~v~vs~~a~~~~~~~~~~~s 87 (363) T 1z6f_A 8 MIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS 87 (363) T ss_dssp CCCCCCCCSEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEECCGGGCGGGCGGGTTSC T ss_pred CCCCCCCCCCEEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC T ss_conf 68998976520999999999989000690998186899999999999999873999856569833899852366335875 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH Q ss_conf 44345101234677767677742358999997640111789999999999870983534412357646222256999999 Q gi|254780435|r 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 (336) Q Consensus 93 ~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~ 172 (336) +++|++|+++|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++++|+|||+||++ T Consensus 88 ~~~l~~ge~~tv~dLl~~lli~SaNdAA~aLAe~~~Gs~~~Fv~~MN~kA~elG~~~T~f~np~Gl~~~~~~tta~Dla~ 167 (363) T 1z6f_A 88 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 167 (363) T ss_dssp CCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCCSSSCCCCTTCBBCHHHHHH T ss_pred CCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH T ss_conf 11345898999999999987656439999999863899999999999999996056650443688872467377899998 Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHH Q ss_conf 9898763123311012302000174478601456566-897115332124112000234564288689999837898667 Q gi|254780435|r 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 (336) Q Consensus 173 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~ 251 (336) |++++++++|++..+++.+++++.+..+.|+|.+|.. ++|++|+|||||++||+||+++++|+|+|+|+||||+++... T Consensus 168 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~G~KTG~t~~AG~~lv~~a~~~g~~~i~Vvlg~~~~~~ 247 (363) T 1z6f_A 168 IGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG 247 (363) T ss_dssp HHHHHHHHCHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCSTT T ss_pred HHHHHHCCCCCCEEEEEEEEEECCCCEEECCCHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCHHH T ss_conf 89998458862002456776503784111463344355777606999887135864577899689638999989998567 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 899999999999851453202345545520---145554234-6543202113455432332113444454426811200 Q gi|254780435|r 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 (336) Q Consensus 252 r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 327 (336) ||.++++|++|+|++|....++.+...... ..+....++ ....++..............+.........+|+++++ T Consensus 248 r~~d~~~L~~~~f~~~~~~~~~~~~~~v~~~~V~~g~~~~v~l~~~~~~~~~lpk~~~~~~~~~~~~~~~~l~APvkkG~ 327 (363) T 1z6f_A 248 REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQ 327 (363) T ss_dssp TTHHHHHHHHHHHHHEEEEEEECTTSCSEEEECBSBSSSEEEEECSSCEEEEEETTCGGGCEEEEEESSSSCBSCBCTTC T ss_pred HHHHHHHHHHHHHHHEEEEEEECCCCCCCCCEEECCCCCEECCCCCCCEEEEEECCCCCCCEEEEEECCCCEECCCCCCC T ss_conf 79999999999986408996302687211004651444300000367669998888645637999987875204568999 Q ss_pred ECCCEEC Q ss_conf 0133010 Q gi|254780435|r 328 LLKNKIT 334 (336) Q Consensus 328 ~~~~~i~ 334 (336) .+|+... T Consensus 328 ~VG~v~i 334 (363) T 1z6f_A 328 VVGTINF 334 (363) T ss_dssp EEEEEEE T ss_pred EEEEEEE T ss_conf 9999999 No 4 >3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} Probab=100.00 E-value=0 Score=556.02 Aligned_cols=312 Identities=28% Similarity=0.352 Sum_probs=262.8 Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH---CCCCCCCCC Q ss_conf 78754478568999978962977643998307526989999999985135777787660351787720---036644345 Q gi|254780435|r 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFK 97 (336) Q Consensus 21 ~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~---~~~s~~~l~ 97 (336) ..+|.+.|++||+||++||+|||+||+|+++||||+|||||+|++++++++|+++||++|++|+.++. .++|+++|+ T Consensus 2 ~~pP~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~~~~~~~~~~s~~~l~ 81 (344) T 3a3j_A 2 VTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLD 81 (344) T ss_dssp CCCCCCCSSEEEEEETTTCCEEEEESTTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTTTCGGGCTTSCCCCCC T ss_pred CCCCCCCCCEEEEEECCCCCEEHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCEEEEC T ss_conf 89985561399999999996902069098885399999999999999997499986788996499985058987325334 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 10123467776767774235899999764011178999999999987098353441235764622225699999998987 Q gi|254780435|r 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 (336) Q Consensus 98 ~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~ 177 (336) +|+++|++|||++||++||||||++|||+++||+++||++||++|++|||+||||.|||||++++|+|||+|||+|++++ T Consensus 82 ~ge~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~np~Gl~~~~~~ttA~Dla~l~~~~ 161 (344) T 3a3j_A 82 LNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 161 (344) T ss_dssp TTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCSSSSCCCCTTCBBCHHHHHHHHHHH T ss_pred CCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHH T ss_conf 89768899998777651388099999988089899999999999998388535887453235888766599999999998 Q ss_pred HHHHHHHHCCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEECCCCHHHHHHH Q ss_conf 631233110123020001744786014565-66897115332124112000234564-2886899998378986678999 Q gi|254780435|r 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKV 255 (336) Q Consensus 178 ~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg~~~~~~r~~~ 255 (336) ++++|.+..+++.+.+.+.+..+.|+|.++ +.+.|++|+|||||++||+|+++++. ++|+++|+||||+++...||.| T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~KTG~t~~ag~~~~~~a~~~~~~~ii~Vvlg~~~~~~r~~d 241 (344) T 3a3j_A 162 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVE 241 (344) T ss_dssp HHHCHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEECTTCCEEEEEEEEESSHHHHHHH T ss_pred HCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHH T ss_conf 54874114565588776511321355531346776744236554003677259998505860899999779982058999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCEE--ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC Q ss_conf 999999998514532023455455---201455542346-543202--11345543233211344445442681120001 Q gi|254780435|r 256 SASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPN-ISEEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 (336) Q Consensus 256 ~~~Ll~~~f~~f~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~ 329 (336) +++|++|+|++|+..+++.+.... ..+......+.. ...++. .+............ .......+|+++++.+ T Consensus 242 ~~~L~~~~f~~y~~~~l~~~g~~i~~~~v~~g~~~~v~l~~~~d~~~~vpk~~~~~i~~~i~--~~~~~l~APVkkG~~V 319 (344) T 3a3j_A 242 SKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKARYE--LADKNLQAPLAKGQVI 319 (344) T ss_dssp HHHHHHHHHHHEEEEEEECTTCEEEEEEEESSSSSEEEEECSSCEEEEEETTCTTTCEEEEE--ESSSSEESCBCTTCEE T ss_pred HHHHHHHHHHHCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE--ECCCCCCCCCCCCCEE T ss_conf 99999998853479996048973218888458533799997577799998998664599999--7788652677879899 Q ss_pred CCEEC Q ss_conf 33010 Q gi|254780435|r 330 KNKIT 334 (336) Q Consensus 330 ~~~i~ 334 (336) |.... T Consensus 320 G~l~v 324 (344) T 3a3j_A 320 GKVVY 324 (344) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 99999 No 5 >1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1 Probab=100.00 E-value=0 Score=552.00 Aligned_cols=315 Identities=23% Similarity=0.282 Sum_probs=262.6 Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC----CCCC Q ss_conf 357875447856899997896297764399830752698999999998513577778766035178772003----6644 Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNS 94 (336) Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~----~s~~ 94 (336) ..+..+.+.|++|||+|++||+|||+||+|+++||||+|||||+|+++|+++.|+++||++|++|+++.... +|.+ T Consensus 5 a~a~~~~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~le~i~~g~i~l~~~v~vs~~~~~~~~~~~~s~~ 84 (379) T 1xp4_A 5 AVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNI 84 (379) T ss_dssp -----CCCSBSSEEEEETTTTEEEEEESCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCHHHHHTTTSCCSSCC T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCC T ss_conf 43789974445899999999979145590998878899999999999999876999988479945899863278653101 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------------C Q ss_conf 34510123467776767774235899999764011178999999999987098353441235764--------------6 Q gi|254780435|r 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q 160 (336) Q Consensus 95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------------~ 160 (336) + .+|+++|++|||++||++|+||||++|||+++||+++||++||++|++|||++|||.|||||+ + T Consensus 85 ~-~~G~~~tv~dLl~~lli~S~NdAA~aLA~~i~Gs~~~Fv~~MN~kA~elGm~~T~f~np~GL~~~~~~~~~~~~~~~d 163 (379) T 1xp4_A 85 P-MEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 163 (379) T ss_dssp C-CTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCCSCBCCCSSCCCGGGTTTCSCTTCCTT T ss_pred C-CCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 0-278616799999999886378899999998268399999999999998099644662689987655555567777755 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC----CCCCEEEEEEECCHHHHHEEEEEEEECC Q ss_conf 222256999999989876312331101230200017447860145656----6897115332124112000234564288 Q gi|254780435|r 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGD 236 (336) Q Consensus 161 ~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~----~~~gv~G~KTG~t~~AG~~lv~~a~~~g 236 (336) ++|+|||+||++|+++++++||+++++++.++++++++++.|+|+++. .|+|++|+|||||+.||+||+++++||| T Consensus 164 ~~~~sTA~Dla~l~~~~~~~~p~~~~~~~~~~~t~~~~~~~n~N~~l~~~~~~~~gv~G~KTG~T~~AG~~lv~~a~~~g 243 (379) T 1xp4_A 164 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKG 243 (379) T ss_dssp CCCEECHHHHHHHHHHHHHHCGGGHHHHTCSEEEETTEEEECSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC T ss_conf 02266699999999999874835420243014888144455303345687311467421797210014453678898689 Q ss_pred EEEEEEEECCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCCCCC-CCCCCEEECCCCCCCC Q ss_conf 68999983789866----789999999999985145320234554552-----0145554234-6543202113455432 Q gi|254780435|r 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDF-----YQQNLSNEVP-NISEEVCTTQKEIINY 306 (336) Q Consensus 237 ~~li~Vvlg~~~~~----~r~~~~~~Ll~~~f~~f~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~v~~~~~~~~~~ 306 (336) ||+|+||||+++.+ .||.++++|+||+|++|+...+..+..... ++......+. ....++.......... T Consensus 244 ~~~i~Vvlg~~~~~~~~~~R~~d~~~Ll~~~f~~~~~~~i~~~~~~~~~~~i~v~~g~~~~v~~~~~~~~~~~~~~~~~~ 323 (379) T 1xp4_A 244 MRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQS 323 (379) T ss_dssp EEEEEEEEEECCBTTBTTHHHHHHHHHHHHHHHHEEEEEEECTTCCSSSCBCCBSSSSCSCCBEECSSCEEEEEESSCSS T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC T ss_conf 08999997898777634455689999999998635375402489870220477607831179898067779995579755 Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCEEC Q ss_conf 3321134444544268112000133010 Q gi|254780435|r 307 NTQMKEAKDKESHFIDFEKITLLKNKIT 334 (336) Q Consensus 307 ~~~~~~~~~~~~~~~~~~ki~~~~~~i~ 334 (336) ..............+|+++++.+|+... T Consensus 324 ~~~~~~~~~~~~l~APi~kG~~vG~l~~ 351 (379) T 1xp4_A 324 SQSVQFTPDSKAIPAPLEAGTVVGHLTY 351 (379) T ss_dssp CCCCCCCCBSSSBCSCBCTTSEEEEEEC T ss_pred CEEEEEEECCCCEECCCCCCCEEEEEEE T ss_conf 4279999778746315068989999999 No 6 >3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis} Probab=100.00 E-value=0 Score=543.36 Aligned_cols=250 Identities=26% Similarity=0.280 Sum_probs=233.4 Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCH Q ss_conf 78754478568999978962977643998307526989999999985135777787660351787720036644345101 Q gi|254780435|r 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 (336) Q Consensus 21 ~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~ 100 (336) .+++.+.|++|||||++||+|||+||+|+++||||+|||||+|+++|++ +||++|+||++++..++|+++|++|+ T Consensus 2 ~~~~~i~A~saiv~D~~tG~iL~~kn~~~~~~pASlTKlmT~~v~le~~-----~l~~~v~vs~~a~~~~~s~~~l~~g~ 76 (334) T 3mfd_A 2 NAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESG-----KMDQTVTVSANAVRTEGSAIYLTEGQ 76 (334) T ss_dssp --CCCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHHTT-----CTTSEEECCHHHHHCCSSCCCCCTTC T ss_pred CCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCEEEECHHHHCCCCCEEEECCCC T ss_conf 9886763549999999999890206909989568899999999999588-----99986998899943799535354898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCHHHHHHHHHHHHH Q ss_conf 234677767677742358999997640111789999999999870983534412357646-2222569999999898763 Q gi|254780435|r 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKT 179 (336) Q Consensus 101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-~~~~tTa~Dla~l~~~~~~ 179 (336) ++|++|||++||++|+||||++|||+++||+++||++||++|++|||++|||.|||||++ ++|+|||+||++|++++++ T Consensus 77 ~~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~n~~GL~~~~~~~sTa~Dla~l~~~~~~ 156 (334) T 3mfd_A 77 KVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAMK 156 (334) T ss_dssp EEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTTCBCSSSSCCSCSSSCBBCHHHHHHHHHHHTT T ss_pred EEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 76099999999876357799999987269789999999999999588576014675675866777569999999986405 Q ss_pred HHHHHHCCCCEEECCCCC--EEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHHHHH Q ss_conf 123311012302000174--478601456566-89711533212411200023456428868999983789866789999 Q gi|254780435|r 180 DFPQYMHYFQIKGLEIKG--KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 (336) Q Consensus 180 ~~p~~~~~~~~~~~~~~~--~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~ 256 (336) +|+|.++++++.+++++ ..+.|+|+||+. |+|++|+|||||++|||||+++++|||+|+|+||||+++ ||.|+ T Consensus 157 -~p~~~~i~~~~~~~~~~~~~~~~N~N~lL~~~~~~~~G~KTG~T~~AG~~lv~~a~~~g~~li~Vvlg~~~---~~~d~ 232 (334) T 3mfd_A 157 -LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPN---DWDDH 232 (334) T ss_dssp -SHHHHHHHTCSEEECSSSSCEEECCCHHHHTTCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEESCTT---HHHHH T ss_pred -CHHHHHHCCEEEEECCCCCCEEECCCCHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC---CHHHH T ss_conf -72244214168997267552213347400204776252485257888841789999999899999927886---27799 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 99999998514532023455455 Q gi|254780435|r 257 ASLLSMGFYNKTDRKKINYIIKD 279 (336) Q Consensus 257 ~~Ll~~~f~~f~~~~~~~~~~~~ 279 (336) ++|++|+|++|....+..++..+ T Consensus 233 ~~Ll~~~f~~~~~~~l~~~g~i~ 255 (334) T 3mfd_A 233 MKMFNYVFEHYQTYLIAKKGDIP 255 (334) T ss_dssp HHHHHHHHHHEEEEEEECSEECG T ss_pred HHHHHHHHHHCEEEEECCCCCCC T ss_conf 99999998626799820389733 No 7 >1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Probab=100.00 E-value=0 Score=535.13 Aligned_cols=252 Identities=27% Similarity=0.411 Sum_probs=233.9 Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCCHH Q ss_conf 4785689999789629776439983075269899999999851357777876603517877200----366443451012 Q gi|254780435|r 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGST 101 (336) Q Consensus 26 ~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g~~ 101 (336) ...+.++++|++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++.. ++|+++|++|++ T Consensus 32 ~~~~~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~ 111 (369) T 1tvf_A 32 AYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQV 111 (369) T ss_dssp GGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCE T ss_pred CCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCE T ss_conf 56863699997899294267809982878999999999999988638988344713579999734587776124438979 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCCCH Q ss_conf 34677767677742358999997640111789999999999870983534412357646--------------2222569 Q gi|254780435|r 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTA 167 (336) Q Consensus 102 ~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~tTa 167 (336) +|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++ .+|+||| T Consensus 112 ~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA 191 (369) T 1tvf_A 112 WTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA 191 (369) T ss_dssp EEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCH T ss_pred EEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCH T ss_conf 75999999876447778999999870477799999999999984889875667888877544434543343334304029 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC----CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEE Q ss_conf 9999998987631233110123020001744786014565----668971153321241120002345642886899998 Q gi|254780435|r 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 (336) Q Consensus 168 ~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll----~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vv 243 (336) +||++|+++++++||+++++++...++++..++.|+|+++ ..|+|++|+|||||++||+||+++++|||||+|+|| T Consensus 192 ~Dla~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VV 271 (369) T 1tvf_A 192 RDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVI 271 (369) T ss_dssp HHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEE T ss_pred HHHHHHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEE T ss_conf 99999998876348211000227510027511131020115665566773103124536787279999999998999999 Q ss_pred ECCCCHH------HHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 3789866------789999999999985145320234554 Q gi|254780435|r 244 LGALDRN------TRNKVSASLLSMGFYNKTDRKKINYII 277 (336) Q Consensus 244 lg~~~~~------~r~~~~~~Ll~~~f~~f~~~~~~~~~~ 277 (336) ||+++.. .||.++++||||+|++|+...++.++. T Consensus 272 lg~~~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~kg~ 311 (369) T 1tvf_A 272 MGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE 311 (369) T ss_dssp EEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC T ss_conf 5899865542478899999999999986266999744997 No 8 >1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A Probab=100.00 E-value=0 Score=504.48 Aligned_cols=240 Identities=25% Similarity=0.344 Sum_probs=223.5 Q ss_pred CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH----HHCCCCCCCCC Q ss_conf 87544785689999789629776439983075269899999999851357777876603517877----20036644345 Q gi|254780435|r 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFK 97 (336) Q Consensus 22 ~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~----~~~~~s~~~l~ 97 (336) .+|.+.+++|||+|++||+|||+||+|+++||||+|||||+|++++ +|+++||++|+|++.+ ...++|.++|+ T Consensus 2 ~~P~i~a~~aiv~d~~tG~vL~~kn~~~~~~pASlTKlmTa~~~l~---~~~l~ld~~vti~~~~~~~~~~~~~s~~~l~ 78 (262) T 1es5_A 2 TKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLA---QSNLNLDAKVTIQKAYSDYVVANNASQAHLI 78 (262) T ss_dssp -CCCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHT---CTTCCTTCEEECCHHHHHHHHHTTCCCCCCC T ss_pred CCCCCCCCEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHH---HCCCCCCCEEEEEHHHHHHHHCCCCCEEEEC T ss_conf 9997465189999999995911269099887788999999999998---0899988789984767667640787256225 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHH Q ss_conf 10123467776767774235899999764011------178999999999987098353441235764622225699999 Q gi|254780435|r 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 (336) Q Consensus 98 ~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~G------s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla 171 (336) +|+++||+|||++||+.|+||||++|||++|| +.++||++||++|++|||++|||.||+||++++|+|||+||+ T Consensus 79 ~G~~~tv~dLl~~~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~~lGm~~T~f~n~~Gl~~~~n~sTa~Dla 158 (262) T 1es5_A 79 VGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLT 158 (262) T ss_dssp TTCEEEHHHHHHHHHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHTTCSSCBCSSSSCCSCTTCBBCHHHHH T ss_pred CCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 99897799999999986156999999985389863212099999999999998378655430467654457758999999 Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCC----------EEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEE Q ss_conf 99898763123311012302000174----------47860145656689711533212411200023456428868999 Q gi|254780435|r 172 ILSWRIKTDFPQYMHYFQIKGLEIKG----------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 (336) Q Consensus 172 ~l~~~~~~~~p~~~~~~~~~~~~~~~----------~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~ 241 (336) +|++++++ +|.+.++++++.+++.. .+|.|+|+||+.|+|++|+|||||++||+|||+++++||||+|+ T Consensus 159 ~l~~~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~n~N~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~li~ 237 (262) T 1es5_A 159 KIASSAMK-NSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIG 237 (262) T ss_dssp HHHHHHTT-SHHHHHHHTCSEECCEEECTTSCEEECCCEECSCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEE T ss_pred HHHHHHCC-CCHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEE T ss_conf 99998512-62155552310277610113687543100004352215689935999546636675799999989979999 Q ss_pred EEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 983789866789999999999985 Q gi|254780435|r 242 VILGALDRNTRNKVSASLLSMGFY 265 (336) Q Consensus 242 Vvlg~~~~~~r~~~~~~Ll~~~f~ 265 (336) ||||+++.+.||.|+++|+||||. T Consensus 238 Vvlg~~~~~~r~~d~~~Lld~gFa 261 (262) T 1es5_A 238 TVLASTSIPARESDATKIMNYGFA 261 (262) T ss_dssp EEEEESSHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCHHHHHHHHHHHHHHCC T ss_conf 996989912899999999986614 No 9 >2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis} Probab=100.00 E-value=0 Score=499.78 Aligned_cols=251 Identities=22% Similarity=0.231 Sum_probs=227.8 Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCC Q ss_conf 35787544785689999789629776439983075269899999999851357777876603517877200366443451 Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 (336) Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~ 98 (336) .....|.+.|++|||+|++||+|||+||+|+++||||+|||||+|+++|++ ++++.++++......+++.++|++ T Consensus 10 ~~~~~P~i~A~saiv~D~~tG~iL~~kn~d~~~~pASlTKlMTa~v~le~~-----~~~~~v~~~~~~~~~~~s~~~l~~ 84 (276) T 2bcf_A 10 GSVPIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDEL-----DLNSTVVADVADTQAECNCVGVKP 84 (276) T ss_dssp TCCCCCCCSCSEEEEEETTTCEEEEEESTTCCBCCGGGHHHHHHHHHHHHC-----CTTCEEECCTGGGCCSSCCCCCCT T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHHCEEEEECC T ss_conf 889999976408999999999890004929982738999999999999834-----789869974455442210343269 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC--CCCCCHHHHHHHHHH Q ss_conf 012346777676777423589999976401117899999999998709835344123576462--222569999999898 Q gi|254780435|r 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYTTARDMAILSWR 176 (336) Q Consensus 99 g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~--~~~tTa~Dla~l~~~ 176 (336) |+++|++|||++||+.|+||||++|||++||+ ++||++||++|++|||++|||.||+||+++ +|+|||+||++|+++ T Consensus 85 G~~~tv~dLl~~~lv~S~NdAA~aLA~~~gg~-~~Fv~~MN~~A~~lGm~~T~F~np~Gl~~~~~~~~sTA~Dla~l~~~ 163 (276) T 2bcf_A 85 GRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQ-DVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA 163 (276) T ss_dssp TCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTCTTCBCSSSSSSCBTTBSCBBCHHHHHHHHHH T ss_pred CCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 98999999998898862377999988875697-57999999999984977566067877999875554689999999999 Q ss_pred HHHHHHHHHCCCCEEECCCC----CEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCC---CH Q ss_conf 76312331101230200017----447860145656689711533212411200023456428868999983789---86 Q gi|254780435|r 177 IKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---DR 249 (336) Q Consensus 177 ~~~~~p~~~~~~~~~~~~~~----~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~---~~ 249 (336) +++ +|+|.++++++++.+. ...+.|+|+||+.|+|++|+|||||++||+||+++++|||+|+|+||||+. +. T Consensus 164 ~~~-~p~~~~i~~~~~~~~~~~~~~~~~~n~n~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~lI~vVlg~~~~~~~ 242 (276) T 2bcf_A 164 AMA-NPVFAQIIAEPSAMFPSDDGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGG 242 (276) T ss_dssp HHH-SHHHHHHHHCSEEEECCC--CEEEECCCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCCTTC T ss_pred HHH-CCHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCCH T ss_conf 986-8066643435789993566731255534024407882440363024788579999999997999999788777871 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 678999999999998514532023455 Q gi|254780435|r 250 NTRNKVSASLLSMGFYNKTDRKKINYI 276 (336) Q Consensus 250 ~~r~~~~~~Ll~~~f~~f~~~~~~~~~ 276 (336) ..||.|+++|+||||..++...+...+ T Consensus 243 ~~r~~d~~~Lld~gF~~~~~~~v~~~g 269 (276) T 2bcf_A 243 PTYWDQAATLFDWGFALNPQASVGSLG 269 (276) T ss_dssp CCHHHHHHHHHHHHHHSCTTCCSEEC- T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 479999999999873458777146076 No 10 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Probab=100.00 E-value=2.7e-39 Score=257.59 Aligned_cols=209 Identities=16% Similarity=0.038 Sum_probs=167.1 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ ++|+|+++||||++|+||++++|++++.| .||++|+++++....+++.+++.+|+++|++||++ T Consensus 62 gv~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~~--~Ld~~v~i~~~~~~~~~~~~~~~~g~~~tv~~Ll~ 138 (307) T 1w7f_A 62 GIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKSIE--DLNQRITYTRDDLVNYNPITEKHVDTGMTLKELAD 138 (307) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHCCTG--GGGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999989999888-88899840327899999999999865767--76751466388750589740026898344999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67774235899999764011178999999999987098353441235764------622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||.+|++.+||. +.||++++++|+.+|++.+..+.. +..|.+|++||+.+...+... +. T Consensus 139 ~mi~~SdN~Aa~~L~~~lgg~-----~~~~~~~~~lg~~~t~l~~~~~~~~~~~~~~~~~~tt~~~~a~ll~~~~~~-~~ 212 (307) T 1w7f_A 139 ASLRYSDNTAQNLILKQIGGP-----ESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALE-DK 212 (307) T ss_dssp HHHHHCCHHHHHHHHHHTTHH-----HHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-SS T ss_pred HHHHCCCHHHHHHHHHHHCCH-----HHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CC T ss_conf 998468459999999980883-----789999997595116357667665678888653434599999999987417-53 Q ss_pred HHCCCCEEECCCCCEE--EEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC Q ss_conf 1101230200017447--86014565668971153321241120002345642-8868999983789 Q gi|254780435|r 184 YMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL 247 (336) Q Consensus 184 ~~~~~~~~~~~~~~~~--~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~ 247 (336) .....+.....+.... ..+..+........+|.|||+++.+|+|+++.+.. +|+++|+|||... T Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~g~~~iivVl~~~ 279 (307) T 1w7f_A 213 LPSEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSR 279 (307) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEECSTTCEEEEEEEECSSSCCEEEEEEEEC T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECC T ss_conf 5889999999987524526654445689985689875265887067899998699988999999279 No 11 >2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1 Probab=100.00 E-value=2.5e-39 Score=257.75 Aligned_cols=227 Identities=14% Similarity=0.031 Sum_probs=177.7 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ +.|+|+++||||++|+|+++.+++++++|+++||+++++++.....+++.+++.+|+.+|++||++ T Consensus 19 gv~v~dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~ 97 (262) T 2cc1_A 19 GLYAANLQSGRRI-THRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAELCQ 97 (262) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGCCSSCHHHHTTTTSEEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCEECCCCCEEEHHHHHH T ss_conf 9999999999888-889998498389999999999999755289986538997642303799740126898063999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6777423589999976401117899999999998709835344123576------4622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +||+.|+|+||++|+++++| .+.||+.++++|+.+|+|.+.++. ....|++||+||+.+.+++..+. . T Consensus 98 ~mi~~SdN~Aa~~L~~~~~g-----~~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~sTa~d~~~l~~~l~~~~-~ 171 (262) T 2cc1_A 98 AALQRSDNTAANLLLKTIGG-----PAAVTAFARSVGDERTRLDRWEVELNSAIPGDPRDTSTPAALAVGYRAILAGD-A 171 (262) T ss_dssp HHHHSCCHHHHHHHHHHHTH-----HHHHHHHHHHTTCCSCCCCSCTTGGGGCCTTCCTTEECHHHHHHHHHHHHHSS-S T ss_pred HHHHHCCHHHHHHHHHHCCC-----CHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-C T ss_conf 99873447999999998499-----54889999964466612576655556788998877644999999999997588-5 Q ss_pred HHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEEC-CCCHHHHHHHHHHHHH Q ss_conf 11012302000174478601456566897115332124112000234564-288689999837-8986678999999999 Q gi|254780435|r 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG-ALDRNTRNKVSASLLS 261 (336) Q Consensus 184 ~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg-~~~~~~r~~~~~~Ll~ 261 (336) +....+..-..+-.....+...-........|.|||+++.+++|.++.+. ++|+++|+|||. .+..+.++.++.+++. T Consensus 172 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~g~v~~~~g~~~i~vv~~~~~~~~~~~~~~~~li~ 251 (262) T 2cc1_A 172 LSPPQRGLLEDWMRANQTSSMRAGLPEGWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPLIG 251 (262) T ss_dssp SCHHHHHHHHHHHHTCSCCSGGGGSCTTCEEEEEEEECSTTCEEEEEEEECTTSCEEEEEEEEEESSSCTTCCCCHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHH T ss_conf 79899999999985273788544478886178886154888578999999289989999999689986605899999999 Q ss_pred HH Q ss_conf 99 Q gi|254780435|r 262 MG 263 (336) Q Consensus 262 ~~ 263 (336) +. T Consensus 252 ~i 253 (262) T 2cc1_A 252 EL 253 (262) T ss_dssp HH T ss_pred HH T ss_conf 99 No 12 >2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} Probab=100.00 E-value=1.5e-38 Score=253.11 Aligned_cols=212 Identities=12% Similarity=-0.005 Sum_probs=166.3 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCC-CCCCCCCCHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036-64434510123467776 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNAL 108 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~-s~~~l~~g~~~tv~dll 108 (336) +..++|.+||+++ ++|+|+++|+||++|+|+++++++++++|+++|+++|++++.....++ ....+.+|+++|++||+ T Consensus 40 gv~v~d~~tg~~~-~~n~d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~tl~~Ll 118 (287) T 2qpn_A 40 GVAIVDPQGEIVA-GHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEAA 118 (287) T ss_dssp EEEEECTTCCEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGCCSSCHHHHHHTTTTEEEHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCEEEECCCCEEEHHHHH T ss_conf 9999989999489-876997425458999999999999876388776615750588852579750342589787899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC------CCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 7677742358999997640111789999999999870983534412------3576462222569999999898763123 Q gi|254780435|r 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN------AHGVVQHGHYTTARDMAILSWRIKTDFP 182 (336) Q Consensus 109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n------~~Gl~~~~~~tTa~Dla~l~~~~~~~~p 182 (336) .+|++.|+|+||++|++++||.. .+|+.++++|++++++.+ +.+..+..|+|||+||+.+.+++.+. + T Consensus 119 ~~mi~~SdN~Aa~~L~~~lgg~~-----~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tta~d~~~ll~~l~~~-~ 192 (287) T 2qpn_A 119 QAAVQLSDNGATNLLLREIGGPA-----AMTQYFRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYG-G 192 (287) T ss_dssp HHHHHHCCHHHHHHHHHHHTHHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-S T ss_pred HHHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C T ss_conf 99999552699999999948955-----78999998263433136777655667889865640799999999998744-3 Q ss_pred HHHCCCCEEECCCCCEEEEECCCCCC--CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC Q ss_conf 31101230200017447860145656--6897115332124112000234564288689999837898 Q gi|254780435|r 183 QYMHYFQIKGLEIKGKKYPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 (336) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~N~N~ll~--~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~ 248 (336) .+.+........+......+.|.+.. ......|.|||+++.+++|+++.++.+|+++|+|||...+ T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~~~~ii~Vl~~~~ 260 (287) T 2qpn_A 193 ALTSTSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAVYTTAP 260 (287) T ss_dssp SSCHHHHHHHHHHHHTCSSCTTSGGGGSCTTSEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECT T ss_pred CCCHHHHHHHHHHHHCCEECHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCEEEEEEEEECCC T ss_conf 34789999999997368352223430489897689960536786559999999899569999992599 No 13 >3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} Probab=100.00 E-value=1e-37 Score=248.04 Aligned_cols=229 Identities=16% Similarity=0.039 Sum_probs=174.9 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ ++|+|+++||||++|+|+++++++++++|+++||++|+++++....+++.+++.+|+.++++||++ T Consensus 45 gv~v~Dl~tG~~~-~~n~d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v~i~~~~~~~~s~~~~~~~g~~~tv~dLl~ 123 (294) T 3dw0_A 45 GVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA 123 (294) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEECCCGGGCCSSCHHHHHTTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999989999886-788997342255999999999999886499887836996478703799721035788667999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 677742358999997640111789999999999870983534412357------64622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------VVQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G------l~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||.+|+|+++| .+.||++++++|++++++.+..+ ..+..|.+|++|++.+..++..+ +. T Consensus 124 ~mi~~SdN~Aa~~L~~~lgg-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~t~~d~a~~l~~l~~~-~~ 197 (294) T 3dw0_A 124 AAVQYSDNAAANLLLKELGG-----PAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLG-SA 197 (294) T ss_dssp HHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-SS T ss_pred HHHHHCCHHHHHHHHHHHCC-----CCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CC T ss_conf 99973759999999998677-----5169999998073332047887644588998754515599999999999838-75 Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEEC-CEEEEEEEECCC---CH---HHHH Q ss_conf 110123020001--744786014565668971153321241120-0023456428-868999983789---86---6789 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQG-DQSLIAVILGAL---DR---NTRN 253 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~-g~~li~Vvlg~~---~~---~~r~ 253 (336) ...........+ ......+.++......+..|.|||+++.+| +|.++.+..+ ++++++||+-.. +. +.-. T Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~dvgiv~~~~~~~~iiaV~~~~~~~~~~~~~~li 277 (294) T 3dw0_A 198 LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 277 (294) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHH T ss_conf 34678999999872575477511014889978998731367876488999999389987999999179999989999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999985 Q gi|254780435|r 254 KVSASLLSMGFY 265 (336) Q Consensus 254 ~~~~~Ll~~~f~ 265 (336) .+..+++-.+|. T Consensus 278 ~~iar~v~~~l~ 289 (294) T 3dw0_A 278 AAAARLALEGLG 289 (294) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHHH T ss_conf 999999999972 No 14 >1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ... Probab=100.00 E-value=5.2e-37 Score=243.68 Aligned_cols=211 Identities=17% Similarity=0.072 Sum_probs=167.6 Q ss_pred CC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 85-68999978962977643998307526989999999985135777787660351787720036644345101234677 Q gi|254780435|r 28 LP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106 (336) Q Consensus 28 a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~d 106 (336) ++ +++++|.+||++||++|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|+.+|++| T Consensus 17 ~~~~~~v~D~~tg~~l~~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~~~ 96 (263) T 1m40_A 17 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRE 96 (263) T ss_dssp SEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGCTTTCEEHHH T ss_pred CEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCEEHHH T ss_conf 85999999999997877788998544578999999999999865277787747998420023799730126898164999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHH Q ss_conf 76767774235899999764011178999999999987098353441235764------622225699999998987631 Q gi|254780435|r 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~ 180 (336) |+.+|++.|+|+||.+|+++++|. +.||+.++++|++++.+.++.+.. ...+.+||+||+++.+++.+. T Consensus 97 ll~~mi~~SdN~Aa~~L~~~~gg~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ta~d~a~ll~~l~~~ 171 (263) T 1m40_A 97 LCSAAITMSDNTAANLLLTTIGGP-----KELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMATTLRKLLTG 171 (263) T ss_dssp HHHHHHHSCCHHHHHHHHHHHTSH-----HHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS T ss_pred HHHHHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 999988628679999999984693-----489999998354666516887766689999876740899999999999838 Q ss_pred HHHHHCCCCEEECCCCCEEEEECCCCCC---CCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEEC Q ss_conf 2331101230200017447860145656---68971153321241120002345642886-89999837 Q gi|254780435|r 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILG 245 (336) Q Consensus 181 ~p~~~~~~~~~~~~~~~~~~~N~N~ll~---~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg 245 (336) +.+.+.....-..+..... +.+.++. ......|.|||++..+++|+++.+..+|+ ++++||+. T Consensus 172 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~v~~KTG~~~~~~~~~~~iv~~~g~~~~ivvv~~ 238 (263) T 1m40_A 172 -ELLTLASRQQLIDWMEADK-VAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYT 238 (263) T ss_dssp -TTSCHHHHHHHHHHHHCCS-SCTTTGGGGCCTTCEEEEEEEECSTTCEEEEEEEESTTCCCEEEEEEE T ss_pred -CCCCHHHHHHHHHHHHCCE-ECCHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEEC T ss_conf -8468888999998874481-360000123899964888316577887149999991997599999981 No 15 >3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A Probab=100.00 E-value=2.2e-38 Score=252.07 Aligned_cols=214 Identities=14% Similarity=-0.003 Sum_probs=173.7 Q ss_pred CCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 856-8999978962977643998307526989999999985135777787660351787720036644345101234677 Q gi|254780435|r 28 LPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106 (336) Q Consensus 28 a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~d 106 (336) ++- ..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+ ||+.+++++.....+++.+++.+|+.+|++| T Consensus 15 ~~~~v~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~--ld~~v~~~~~~~~~~~~~~~~~~g~~~tv~~ 91 (265) T 3m6b_A 15 ARLGVYVPATGTTAAI-EYRADERFAFCSTFKAPLVAAVLHQNPLTH--LDKLITYTSDDIRSISPVAQQHVQTGMTIGQ 91 (265) T ss_dssp CEEEEEECCCSSCCCE-EESTTSCEECGGGGHHHHHHHHHHHSCGGG--GGCEECCCGGGCCSCCTTGGGCTTTCEEHHH T ss_pred CEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHH T ss_conf 8699999999999889-989997388389999999999998577678--8842785499950689852025888514999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHH Q ss_conf 7676777423589999976401117899999999998709835344123576462------2225699999998987631 Q gi|254780435|r 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------GHYTTARDMAILSWRIKTD 180 (336) Q Consensus 107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~------~~~tTa~Dla~l~~~~~~~ 180 (336) |+++||+.|+|+||++|++.+|| .+.|.++||++++++|+++|+|.+++|.+.. .+.+|++|++++.+++... T Consensus 92 ll~~mi~~SdN~Aa~~L~~~~Gg-~~~~~~~~n~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~t~~~~a~~l~~l~~~ 170 (265) T 3m6b_A 92 LCDAAIRYSDGTAANLLLADLGG-PGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLG 170 (265) T ss_dssp HHHHHHHSCCHHHHHHHHHHHCS-TGGGHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS T ss_pred HHHHHHHHCCHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 99999984338999999999689-68899999999997598643613677665544567641022599999999999737 Q ss_pred H---HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC Q ss_conf 2---33110123020001744786014565668971153321241120002345642-8868999983789 Q gi|254780435|r 181 F---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL 247 (336) Q Consensus 181 ~---p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~ 247 (336) . |...+.. ...........+.+.......+..|.|||+++.+++|.++.++. +|+++|++||... T Consensus 171 ~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~KtG~~~~~~~~dvgiv~~~~g~~~iiaV~~~~ 239 (265) T 3m6b_A 171 NALPPDKRALL--TDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDR 239 (265) T ss_dssp SSSCHHHHHHH--HHHHHTCSSCTTTHHHHSCTTSEEEEEEEEETTTEEEEEEEEECTTSCEEEEEEEEEC T ss_pred CCCCHHHHHHH--HHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEECC T ss_conf 65688899999--9997458877776445678885688876367877479999999599998999999579 No 16 >2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A* Probab=100.00 E-value=2.7e-36 Score=239.34 Aligned_cols=232 Identities=16% Similarity=0.079 Sum_probs=174.0 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC-CCCCCCCCCCHHHHHHHHH Q ss_conf 689999789629776439983075269899999999851357777876603517877200-3664434510123467776 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNAL 108 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~-~~s~~~l~~g~~~tv~dll 108 (336) ++.++|.+||+++ +.|+|+++|+||++|+|+++.+++++++|+++||++|++++..... .++..++++|+.+|++||+ T Consensus 37 ~v~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~G~l~ld~~v~i~~~~~~~~~~~~~~~~~g~~~tl~~ll 115 (298) T 2j9o_A 37 GLYFFNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMRPDLIAPEAGTLQYQKPNSQYAALEVA 115 (298) T ss_dssp EEEEEETTTCEEE-EEBTTSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEEECCGGGCCCSSCSGGGSCTTCEEEHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHCCCCCCCCEECCCCCEEEHHHHH T ss_conf 9999989999889-988995132557999999999999987499896556687377605799752000699766899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 76777423589999976401117899999999998709835344123576462222569999999898763123311012 Q gi|254780435|r 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 (336) Q Consensus 109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~~~~~~ 188 (336) .+|++.|+|+|+.+|++.+|| .+.||++++++|+++|+|.+|.|..+..+.+||+|++.+..++... +...... T Consensus 116 ~~mi~~SdN~Aa~~L~~~~g~-----~~~~n~~~~~~G~~~t~~~~~~~~~~~~~~~ta~d~~~ll~~l~~~-~~~~~~~ 189 (298) T 2j9o_A 116 ELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQG-EILSPRS 189 (298) T ss_dssp HHHHHSCCHHHHHHHHHHTTC-----HHHHHHHHHHTTCSSCBCCSCTTCTTCCSEECHHHHHHHHHHHHTT-CSSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHH T ss_conf 999985448899999999577-----4999999997699771522788765668867999999999999818-9789899 Q ss_pred CEEECCC-CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC--HHHHHHHHHHHHHHHHH Q ss_conf 3020001-74478601456566897115332124112000234564288689999837898--66789999999999985 Q gi|254780435|r 189 QIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFY 265 (336) Q Consensus 189 ~~~~~~~-~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~--~~~r~~~~~~Ll~~~f~ 265 (336) +..-... ......+..+-........|.|||++..++.+......++|+++|+|||.... ......-...+-...|+ T Consensus 190 ~~~l~~~m~~~~~~~~i~~~lp~~~~v~~KtG~~~~~~~d~giv~~~~g~~yi~avl~~~~~~~~~~~~~i~~i~~~v~~ 269 (298) T 2j9o_A 190 RDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMVYQ 269 (298) T ss_dssp HHHHHHHHTSCSCCSSGGGGSCTTCEEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEECSTTCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999708787630231899988987635612610589999947998899999947997618899999999999999 Q ss_pred HCC Q ss_conf 145 Q gi|254780435|r 266 NKT 268 (336) Q Consensus 266 ~f~ 268 (336) .|. T Consensus 270 ~f~ 272 (298) T 2j9o_A 270 AFE 272 (298) T ss_dssp HHH T ss_pred HHH T ss_conf 985 No 17 >1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A* Probab=100.00 E-value=1.8e-36 Score=240.37 Aligned_cols=236 Identities=16% Similarity=0.016 Sum_probs=173.2 Q ss_pred CCCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4785-689999789629776439983075269899999999851357777876603517877200366443451012346 Q gi|254780435|r 26 NKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 (336) Q Consensus 26 ~~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv 104 (336) ..++ +++++|+.||++|+++|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|..+|+ T Consensus 15 ~~g~vg~~v~D~~tG~~l~~~n~d~~~~~AS~~Kl~i~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~ 94 (265) T 1n9b_A 15 LSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTV 94 (265) T ss_dssp HTSEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGGTTTCEEH T ss_pred CCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCCCCCCEEEH T ss_conf 59869999999999938667889985444889999999999998774898867179964677046897400367972679 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-------ECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 777676777423589999976401117899999999998709835344-------1235764622225699999998987 Q gi|254780435|r 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-------MNAHGVVQHGHYTTARDMAILSWRI 177 (336) Q Consensus 105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-------~n~~Gl~~~~~~tTa~Dla~l~~~~ 177 (336) +||+.+|++.|+|+||.+|+++++|.. .||+.++++|.+.+++ .++.+ .+..+.+||+|++.+..++ T Consensus 95 ~~ll~~mi~~SdN~Aa~~L~~~igg~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ta~d~a~ll~~l 168 (265) T 1n9b_A 95 GELCAAAITMSDNSAANLLLATVGGPA-----GLTAFLRQIGDNVTRLDRWETELNEALP-GDARDTTTPASMAATLRKL 168 (265) T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCCSCBCCCCTTGGGCCCT-TCCTTEECHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH T ss_conf 999987360497469999999956855-----8999999952476641677775567889-9643543799999999999 Q ss_pred HHHHHHHHCCCCEEECC--CCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEECCCC---HHH Q ss_conf 63123311012302000--1744786014565668971153321241120002345642886-89999837898---667 Q gi|254780435|r 178 KTDFPQYMHYFQIKGLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALD---RNT 251 (336) Q Consensus 178 ~~~~p~~~~~~~~~~~~--~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg~~~---~~~ 251 (336) ..+. .+.......-.. .......+..+......+..|.|||+++.+++|+++.+..+|+ ++++||+...+ ... T Consensus 169 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dv~iv~~~~~~~~iv~v~~~~~~~~~~~ 247 (265) T 1n9b_A 169 LTSQ-RLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAE 247 (265) T ss_dssp HHSS-SSCHHHHHHHHHHHHTCSSSHHHHHTTSCTTCEEEEEEEEETTTEEEEEEEEESTTCCCEEEEEEEESCCCCHHH T ss_pred HHCC-CCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHH T ss_conf 7477-545889999999874575340000123888876899744278888028999997999589999994799889899 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 89999999999985145 Q gi|254780435|r 252 RNKVSASLLSMGFYNKT 268 (336) Q Consensus 252 r~~~~~~Ll~~~f~~f~ 268 (336) +.+-...+-...+++|+ T Consensus 248 ~~~~i~~i~~~l~~~~~ 264 (265) T 1n9b_A 248 RNQQIAGIGAALIEHWQ 264 (265) T ss_dssp HHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999966 No 18 >2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A Probab=100.00 E-value=1.4e-35 Score=235.02 Aligned_cols=228 Identities=14% Similarity=0.014 Sum_probs=175.1 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ ++|+|+++||||++|+|++++++++++ +.+||+++++++.....+++.+++.+|+.+|++||+. T Consensus 20 gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~--~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~~l~~ 96 (265) T 2wk0_A 20 GIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKS--IEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELAD 96 (265) T ss_dssp EEEEEETTTCCEE-EESTTCEEECGGGHHHHHHHHHHHHCC--TGGGGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEHHHHCCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999989999888-988996472388999999999999668--7775746997566531688742346898333999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6777423589999976401117899999999998709835344123576------4622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||.+|++++|| ...+|+.++++|+++|++.+..+. .+..+++|++|++.+...+..+.+ T Consensus 97 ~mi~~SdN~Aa~~L~~~igg-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~l~~~~~- 170 (265) T 2wk0_A 97 ASLRYSDNTAQNLILKQIGG-----PESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALEDK- 170 (265) T ss_dssp HHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHTSTT- T ss_pred HHHHHCCHHHHHHHHHHHCC-----CCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC- T ss_conf 99986356999999998543-----316999999620445101345565567889974444579999999999960765- Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC-C-----HHHHHH Q ss_conf 110123020001--744786014565668971153321241120002345642-8868999983789-8-----667899 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL-D-----RNTRNK 254 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~-~-----~~~r~~ 254 (336) ........-..+ ......+.++......+..|.|||+++.+++|+++.+.. +|+++|+|||... . .+.... T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~~~giv~~~~g~~yiiaVl~~~~~~~~~~~~~~i~ 250 (265) T 2wk0_A 171 LPSEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYDDKLIA 250 (265) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECSSSCCEEEEEEEECSSTTCCCCTHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHH T ss_conf 68889999999985375574321245788866999461458770789999992899889999990799988789999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999851 Q gi|254780435|r 255 VSASLLSMGFYN 266 (336) Q Consensus 255 ~~~~Ll~~~f~~ 266 (336) +..+++-.+|++ T Consensus 251 ~i~~~i~~~~~~ 262 (265) T 2wk0_A 251 EATKVVVKALNM 262 (265) T ss_dssp HHHHHHHHHC-- T ss_pred HHHHHHHHHHHH T ss_conf 999999999866 No 19 >2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ... Probab=100.00 E-value=2.6e-35 Score=233.34 Aligned_cols=209 Identities=17% Similarity=0.056 Sum_probs=164.9 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..|+|.+||+++ ++|+|+++||||++|+|+++++++++++|+++|+++|++++.....+++.++..+|..++++||+. T Consensus 21 ~v~v~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ll~ 99 (263) T 2p74_A 21 GVALIDTADNTQV-LYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSA 99 (263) T ss_dssp EEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTGGGCEEECCGGGCCSCCTTGGGGTTSEEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999999999889-988997075278999999999999876389997746996066602799841036798431999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67774235899999764011178999999999987098353441------235764622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM------NAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~------n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) .|++.|+|+|+++|+++++|. +.||+.++++|+.+|++. ++....+..|.+||+|++++..++..+.+ T Consensus 100 ~mi~~SdN~Aa~~L~~~igg~-----~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~ll~~l~~~~~- 173 (263) T 2p74_A 100 AALQYSDNTAMNKLIAQLGGP-----GGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHA- 173 (263) T ss_dssp HHHHHCCHHHHHHHHHHTTSH-----HHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS- T ss_pred HHHHHCCHHHHHHHHHHHCCC-----HHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC- T ss_conf 998744479999999984884-----17999999769633873787644567889976663369999999999983887- Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEEC Q ss_conf 110123020001--744786014565668971153321241120002345642886-89999837 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILG 245 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg 245 (336) +.......-..+ ......+..+.........|.|||+++.+++|.++.+..+|+ ++++||+. T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dvgiv~~~g~~~~iv~v~~ 238 (263) T 2p74_A 174 LGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYF 238 (263) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEE T ss_conf 88899999999985586665432333788887888405867875789999996999689999994 No 20 >3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A* Probab=100.00 E-value=7.5e-36 Score=236.61 Aligned_cols=210 Identities=15% Similarity=0.036 Sum_probs=167.2 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+++|+++|++++.....+.+.+++.+|+.+|++||+. T Consensus 20 gv~v~Dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~ 98 (264) T 3c5a_A 20 GVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA 98 (264) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTSTTCEECCCGGGCCSSCHHHHHTTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999989999888-988997584288999999999998515306885651784276614799841105788718999997 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 677742358999997640111789999999999870983534412------35764622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN------AHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n------~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||++|+++++|. +.+|+.++++|++++++.+ +.+..+..|++||+|++++.+++..+. . T Consensus 99 ~mi~~SdN~Aa~~L~~~ig~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~~~ll~~l~~~~-~ 172 (264) T 3c5a_A 99 AAVQYSDNAAANLLLKELGGP-----AGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGS-A 172 (264) T ss_dssp HHHHSCCHHHHHHHHHHTTHH-----HHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSS-S T ss_pred HHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-C T ss_conf 645069389999999995796-----0679999980142203567777556888886545135999999999997487-6 Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEEC-CEEEEEEEECC Q ss_conf 110123020001--744786014565668971153321241120-0023456428-86899998378 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQG-DQSLIAVILGA 246 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~-g~~li~Vvlg~ 246 (336) +....+..-..+ ......+..+......+..|.|||+++.+| +|.++.+.++ ++++|+||+.. T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiivV~~~ 239 (264) T 3c5a_A 173 LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTR 239 (264) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECCGGGCEEEEEEEECTTSCCEEEEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEC T ss_conf 7999999999997357105554454478886689987255888747899999808997899999936 No 21 >1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A Probab=100.00 E-value=2.5e-35 Score=233.41 Aligned_cols=231 Identities=19% Similarity=0.106 Sum_probs=177.9 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|..||+++ ++|+|+++|+||++|+|+++++|+++++|+++||++|+++++....+++.+++.+|.++|++||+. T Consensus 32 gv~~~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~ 110 (276) T 1o7e_A 32 GVTLLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCR 110 (276) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999989999887-777997524349999999999999886489675633110475603689742136888310999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHH Q ss_conf 677742358999997640111--789999999999870983534412357646222256999999989876312---331 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQY 184 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs--~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~---p~~ 184 (336) .|++.|+|+||++|+++++|. ..+|++.|+.+...+++....+..... ....+.+|++|++.+.+++.... |.. T Consensus 111 ~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tt~~~~a~ll~~l~~~~~~~~~~ 189 (276) T 1o7e_A 111 ATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPELNSFAK-GDPRDTTTPAAMAATLQRVVLGEVLQPAS 189 (276) T ss_dssp HHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCCCCCTTGGGCCBT-TBCTTEECHHHHHHHHHHHHTSSSSCHHH T ss_pred HHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCHHH T ss_conf 99985648999999999559168999999826401123454442347889-99778484999999999998388678789 Q ss_pred HCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEE--EECCEEEEEEEE---CCCCHHHHH---HHH Q ss_conf 101230200017447860145656689711533212411200023456--428868999983---789866789---999 Q gi|254780435|r 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA--IQGDQSLIAVIL---GALDRNTRN---KVS 256 (336) Q Consensus 185 ~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a--~~~g~~li~Vvl---g~~~~~~r~---~~~ 256 (336) .... ...........+.++......+..+.|||+++.+++|.++.. .+||+++|+||| +..+...|. .+. T Consensus 190 ~~~~--~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~d~giv~~~~~g~~~iiaV~~~~~~~~~~~~~~~ia~i 267 (276) T 1o7e_A 190 RQQL--ADWLIDNETGDACLRAGLGKRWRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQAGAISYEQRASVLAQV 267 (276) T ss_dssp HHHH--HHHHHTCSSCTTTHHHHSCTTEEEEEEEEECSSSEEEEEEEEEETTSSCCEEEEEEEECTTSCHHHHHHHHHHH T ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 9999--99985683265422245787765767614257786356999996589967999999479999989999999999 Q ss_pred HHHHHHHH Q ss_conf 99999998 Q gi|254780435|r 257 ASLLSMGF 264 (336) Q Consensus 257 ~~Ll~~~f 264 (336) .++++++| T Consensus 268 ~r~v~~~~ 275 (276) T 1o7e_A 268 GRIADRLI 275 (276) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999864 No 22 >3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp} Probab=100.00 E-value=5.5e-36 Score=237.45 Aligned_cols=236 Identities=13% Similarity=0.038 Sum_probs=165.0 Q ss_pred CCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCC--CCCCCCHHHH Q ss_conf 785-6899997896297764399830752698999999998513577778766035178772003664--4345101234 Q gi|254780435|r 27 KLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMT 103 (336) Q Consensus 27 ~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~--~~l~~g~~~t 103 (336) .++ +..++|.+||+++ ++|+|+++||||++|+|++++++++++.|+++|+++|++++.....+++. ..+..|+.++ T Consensus 36 ~~~~gv~~~Dl~tG~~~-~~n~d~~~p~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~i~~~~~~~~~~~~~~~~~~~~~~~ 114 (290) T 3p09_A 36 DGKIGIYTLNTDDKTNI-KYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPITAKNVGKTLT 114 (290) T ss_dssp CSEEEEEEECC----CC-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEECCHHHHTTCCCCTTGGGCTTSEEE T ss_pred CCEEEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCEEECCCCEEH T ss_conf 98399999989999889-88899750426799999999999986548977665168529995136887543434883656 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 677767677742358999997640111--789999999999870983534412357646222256999999989876312 Q gi|254780435|r 104 LDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 (336) Q Consensus 104 v~dll~~~li~S~Ndaa~aLAe~i~Gs--~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~ 181 (336) +++|+++ ++.|+|+||.+|+++++|. .++|++.|+.++.++++..+.|.++.+. +..|+|||+||++|.+++.+. T Consensus 115 ~~~l~~~-~~~SdN~aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~-~~~n~tTa~dla~ll~~l~~~- 191 (290) T 3p09_A 115 ISQLNYA-AILSDSPASNILVRELGGLQNLNKFIKKLGDNDTIITADEPEINYTQPH-SNINKTTPKAITKDIYKLAFG- 191 (290) T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTT-BCTTEECHHHHHHHHHHHHHS- T ss_pred HHHHHHC-CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHC- T ss_conf 9999750-4467829999999996385489999998397232126776322357899-755634899999999999718- Q ss_pred HHHHCCCCEEECCCCCEE--EEECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEE-ECCEEEEEEEECCCCHHH------ Q ss_conf 331101230200017447--86014565668971153321241120-00234564-288689999837898667------ Q gi|254780435|r 182 PQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAI-QGDQSLIAVILGALDRNT------ 251 (336) Q Consensus 182 p~~~~~~~~~~~~~~~~~--~~N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~-~~g~~li~Vvlg~~~~~~------ 251 (336) +.+.+..+.....+.... ..+.++........+|.|||+++.+| +|.++.+. ++|+++|+|||....... T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~g~~yii~V~~~~~~~~~~~~~~ 271 (290) T 3p09_A 192 NILDKKHKDIFIKYLQDNNTGANRIAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTNPNDKNAPSNE 271 (290) T ss_dssp SSSCHHHHHHHHHHHHHCCTTTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECTTCTTCCCCH T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHH T ss_conf 98898999999999843851322110148988779960356567875789999982899879999990689754759999 Q ss_pred -HHHHHHHHHHHHHHH Q ss_conf -899999999999851 Q gi|254780435|r 252 -RNKVSASLLSMGFYN 266 (336) Q Consensus 252 -r~~~~~~Ll~~~f~~ 266 (336) -..+..+++-..|++ T Consensus 272 ~~ia~i~~~v~~~~~~ 287 (290) T 3p09_A 272 EIIQQAAKLIANDLTN 287 (290) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999987 No 23 >1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A Probab=100.00 E-value=8.1e-35 Score=230.30 Aligned_cols=210 Identities=16% Similarity=0.025 Sum_probs=163.9 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ ++|+|+++||||++|+|+++.+++++++|+++|++++++++.....+++.+++.+|+.+|++||+. T Consensus 20 gv~v~Dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~i~~g~l~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll~ 98 (265) T 1bue_A 20 GVYALDTGSGKSF-SYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAA 98 (265) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSSCTTCEECCTTSCCCSSCHHHHHTTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCCCHHHHHH T ss_conf 9999999999888-889998587389999999999999876189886653897576603799731226897113999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67774235899999764011178999999999987098353441------235764622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM------NAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~------n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||.+|+++++|+.+.| ++.++++|++++.+. ++.+..+..|++||+|++.+..++... +. T Consensus 99 ~mi~~SdN~Aa~~l~~~~~g~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~a~ll~~l~~~-~~ 173 (265) T 1bue_A 99 AALQYSDNGATNIILERYIGGPEGM----TKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALG-NI 173 (265) T ss_dssp HHHHSCCHHHHHHHHHHTTCHHHHH----HHHHHHTTCSSCBCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS-SS T ss_pred HHHHHCCHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CC T ss_conf 9998566799999999844856799----999998514432124664545589899865520699999999999847-86 Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHH-EEEEEEE-ECCEEEEEEEEC Q ss_conf 110123020001--7447860145656689711533212411200-0234564-288689999837 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGF-NIVASAI-QGDQSLIAVILG 245 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~-~lv~~a~-~~g~~li~Vvlg 245 (336) +....+.....+ +.....+.++......+.+|.|||+++.+|. +.++.+. .+|+++|+|||. T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiiaV~~ 239 (265) T 1bue_A 174 LSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYT 239 (265) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEE T ss_conf 788899999999834755655322347888768997557777773689999985999889999994 No 24 >1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1 Probab=100.00 E-value=1e-33 Score=223.54 Aligned_cols=230 Identities=16% Similarity=0.023 Sum_probs=172.0 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ +.|+|+++||||++|+|+++.++++++.|+++||+++++++.....+++.+++.+|..+|++||+. T Consensus 22 gv~v~d~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~i~~~~~~~~~~~~~~~~~~g~~~s~~~ll~ 100 (271) T 1hzo_A 22 GVALINTEDNSQI-TYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAELSA 100 (271) T ss_dssp EEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHSTTGGGCEECCCGGGCCSCCTTGGGCTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999989999989-988997072388999999999999745389887855997599962578753346898510999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC------CCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67774235899999764011178999999999987098353441235------764622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH------GVVQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~------Gl~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||++|+++++|.+ .||+.++++|+.++.+.+.. +..+..|.|||+|++.+..++....+ T Consensus 101 ~mi~~SdN~Aa~~L~~~~gg~~-----~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tTa~d~a~ll~~l~~~~~- 174 (271) T 1hzo_A 101 ATLQYSDNTAMNKILDYLGGPA-----KVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTTSPIAMAKSLQALTLGDA- 174 (271) T ss_dssp HHHHTCCHHHHHHHHHHHTSHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS- T ss_pred HHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC- T ss_conf 9998544499999999836907-----8999999936343314677654556789987674389999999999973886- Q ss_pred HHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCC---CHH---HHHH Q ss_conf 110123020001--744786014565668971153321241120002345642-8868999983789---866---7899 Q gi|254780435|r 184 YMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL---DRN---TRNK 254 (336) Q Consensus 184 ~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~---~~~---~r~~ 254 (336) +.......-..+ ......+.++.........|.|||+++.+++|.++.+.. +|+++|+||+... +.. .... T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~yiv~v~~~~~~~~~~~~~~~i~ 254 (271) T 1hzo_A 175 LGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDIIA 254 (271) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHHH T ss_pred CCHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHH T ss_conf 56678999999982776366333345786159999827877774799999993899989999995799999799999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999851 Q gi|254780435|r 255 VSASLLSMGFYN 266 (336) Q Consensus 255 ~~~~Ll~~~f~~ 266 (336) +..+++--.|.+ T Consensus 255 ~ia~~v~~~~~~ 266 (271) T 1hzo_A 255 KAAEIVTKEISN 266 (271) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 25 >1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A Probab=100.00 E-value=2e-32 Score=215.73 Aligned_cols=238 Identities=16% Similarity=0.021 Sum_probs=178.0 Q ss_pred CCCCEEE-EEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4785689-999789629776439983075269899999999851357777876603517877200366443451012346 Q gi|254780435|r 26 NKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 (336) Q Consensus 26 ~~a~~~i-~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv 104 (336) ..++.++ ++|.+||+++ +.|+|+++||||++|+|+++.+++++++|+++|++.+++.......+++.+++.+|+.+++ T Consensus 19 ~~~~~gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~a~l~~~~~g~l~~~~~~~~~~~~~~~~s~~~~~~~g~~~t~ 97 (271) T 1g6a_A 19 LSARIGVSVLDTQNGEYW-DYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITL 97 (271) T ss_dssp TTCEEEEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCGGGCCSSCTTGGGCTTSEEEH T ss_pred CCCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEH T ss_conf 598299999989999888-9899974842899999999999999863998867527864899605998401268972469 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC------CCCCCCCCHHHHHHHHHHHH Q ss_conf 777676777423589999976401117899999999998709835344123576------46222256999999989876 Q gi|254780435|r 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIK 178 (336) Q Consensus 105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl------~~~~~~tTa~Dla~l~~~~~ 178 (336) +||+.+|++.|+|+|+.+|+++++| .+.+|+.++++|++++++.+..+. .+..+++|++|++.+...+. T Consensus 98 ~~ll~~~l~~SdN~A~~~L~~~lg~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~l~ 172 (271) T 1g6a_A 98 DDACFATMTTSDNTAANIILSAVGG-----PKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKAIASTLNKFL 172 (271) T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTTH-----HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCC-----CHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9999887744837999999998479-----54899999983744332267776555788997333406999999999998 Q ss_pred HHHHHHHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECC-EEEEEEEEC---CCCHHHH Q ss_conf 31233110123020001--74478601456566897115332124112000234564288-689999837---8986678 Q gi|254780435|r 179 TDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILG---ALDRNTR 252 (336) Q Consensus 179 ~~~p~~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g-~~li~Vvlg---~~~~~~r 252 (336) ...+ +.+.....-..+ ......+..+......+..|.|||+++.+++|.++.+..++ ++++++|+- ..+...+ T Consensus 173 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~~~giv~~~~~~~yviaV~~~~~~~~~~~~ 251 (271) T 1g6a_A 173 FGSA-LSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLAQTQASMEER 251 (271) T ss_dssp HSSS-SCHHHHHHHHHHHHTCSSCTTTGGGGCCTTCEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEESCCCCHHHH T ss_pred HCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHH T ss_conf 3774-336789999999852610665443447888759998241588877899999968998899999936999998999 Q ss_pred HHHHHHHHHHHHHHCCCC Q ss_conf 999999999998514532 Q gi|254780435|r 253 NKVSASLLSMGFYNKTDR 270 (336) Q Consensus 253 ~~~~~~Ll~~~f~~f~~~ 270 (336) .+-...+-...|+.|..+ T Consensus 252 ~~~i~~is~~i~~~~~~~ 269 (271) T 1g6a_A 252 NDAIVKIGHSIFDVYTSQ 269 (271) T ss_dssp HHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999863 No 26 >1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1 Probab=100.00 E-value=5.3e-33 Score=219.26 Aligned_cols=212 Identities=16% Similarity=0.048 Sum_probs=166.2 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC----CCCCCCCCCHHHHHH Q ss_conf 6899997896297764399830752698999999998513577778766035178772003----664434510123467 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLD 105 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~----~s~~~l~~g~~~tv~ 105 (336) +..++|.+||+++ ++|+|+++||||++|||+++++|++++.|+++||+++++++.....+ .+...+..|+++|++ T Consensus 19 gv~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 97 (266) T 1bsg_A 19 GVYAYDTGSGRTV-AYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGAPETGKPQNLANGMTVE 97 (266) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEECCCHHHHHHHTCCTTTTSHHHHHHCEEHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHH T ss_conf 9999989999889-988998052389999999999999987289986767996167722467755421010689831399 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC------CCCCCCCCCHHHHHHHHHHHHH Q ss_conf 7767677742358999997640111789999999999870983534412357------6462222569999999898763 Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------VVQHGHYTTARDMAILSWRIKT 179 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G------l~~~~~~tTa~Dla~l~~~~~~ 179 (336) |||.+|++.|+|+||++|+++++|. +.+|+.++++|+..+++.+..+ .....|++||+|++++..++.+ T Consensus 98 ~ll~~mi~~SdN~Aa~~L~~~~g~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tta~d~a~ll~~~~~ 172 (266) T 1bsg_A 98 ELCEVSITASDNCAANLMLRELGGP-----AAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVL 172 (266) T ss_dssp HHHHHHHHSCCHHHHHHHHHHHTST-----HHHHHHHHHTTCSSCCCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 9999999986699999999983793-----68999999960565303576665567888876662579999999999965 Q ss_pred HHHHHHCCCCEEECCCCCEEEEECCC--CCCCCCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEECCCC Q ss_conf 12331101230200017447860145--65668971153321241120002345642-88689999837898 Q gi|254780435|r 180 DFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALD 248 (336) Q Consensus 180 ~~p~~~~~~~~~~~~~~~~~~~N~N~--ll~~~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg~~~ 248 (336) + +.+....+.....+......+.|. .........|.|||++..+++|.++.+.. +|+++|+|||...+ T Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~~ii~V~~~~~ 243 (266) T 1bsg_A 173 G-DALNPRDRRLLTSWLLANTTSGDRFRAGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKT 243 (266) T ss_dssp S-SSSCHHHHHHHHHHHHTCCSCTTTHHHHSCTTSEEEEEEEECSTTCEEEEEEEECTTSCCEEEEEEEECS T ss_pred C-CCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCC T ss_conf 8-7348889999999985686466534444788877998862057773579999991899889999990699 No 27 >3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} Probab=100.00 E-value=6.9e-33 Score=218.56 Aligned_cols=212 Identities=13% Similarity=0.000 Sum_probs=156.5 Q ss_pred CCCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 7856-899997896297764399830752698999999998513577778766035178772003664434510123467 Q gi|254780435|r 27 KLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 (336) Q Consensus 27 ~a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~ 105 (336) .++. ..++|++||+++ ++|+|+++||||++|+|+++.+++... +..||+.++++......+++...+.+|+.+|++ T Consensus 13 ~~~~gv~v~dl~tG~~~-~~n~~~~~~~AS~~Kl~~~~~~l~~~~--~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 89 (260) T 3lez_A 13 DVRLGVYAIDTGADKEI-SYRENERFAYTSTFKPLAVGAVLQTKS--DEELEETITYSEEDLVTYSPITEQHVDEGMTLV 89 (260) T ss_dssp TCEEEEEEEETTTTEEE-EESTTSEEECGGGGHHHHHHHHHHHCC--HHHHHSEECCCGGGCCSSCTTGGGCTTTCEEHH T ss_pred CCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEHHHCCCCCCCCCCCCCCCEEHH T ss_conf 98699999989999888-888997073488999999999998566--688772699611011479974013689833399 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC------CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 77676777423589999976401117899999999998709835344123------576462222569999999898763 Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA------HGVVQHGHYTTARDMAILSWRIKT 179 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~------~Gl~~~~~~tTa~Dla~l~~~~~~ 179 (336) |||++|++.|+|+||++|+++++|. +.||+.++++|++++.+... .+..+..|++||+|++.+.+++.+ T Consensus 90 dll~~mi~~SdN~Aa~~L~~~~g~~-----~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~ 164 (260) T 3lez_A 90 EIADAAIRYSDNTAGNLLLEAMGGP-----DELETILRDIGDETIEMDRYETELNEAKPGDIRDTSTAKAMATTLQQYVL 164 (260) T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTSH-----HHHHHHHHHTTCCSCBCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCC-----HHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 9999988618679999999984794-----46899999805133203457654556678984344079999999999984 Q ss_pred HHHHHHCCCCEEECCCCCEEEEECCCC--CCCCCCEEEEEEECCHHHHHEEEEEEEECCEE--EEEEEECCC Q ss_conf 123311012302000174478601456--56689711533212411200023456428868--999983789 Q gi|254780435|r 180 DFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASAIQGDQS--LIAVILGAL 247 (336) Q Consensus 180 ~~p~~~~~~~~~~~~~~~~~~~N~N~l--l~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~--li~Vvlg~~ 247 (336) . +.+.......-.........+.+.+ ........|.|||+++.+++|.++.+..+|.+ ++++|+... T Consensus 165 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~dvgiv~~~~~~~~~iv~V~~~~ 235 (260) T 3lez_A 165 E-DVLDADRREVLTNMLINNTTGDALIRAGVPDGWTVGDKTGAGGYGTRNDIGIIWPEGDEEPIVIAIMSSR 235 (260) T ss_dssp S-SSSCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTTCCCEEEEEEEEC T ss_pred C-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC T ss_conf 7-8788889999999874471254343344788977896105678787689999997899359999998168 No 28 >1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1 Probab=100.00 E-value=7.6e-33 Score=218.28 Aligned_cols=234 Identities=11% Similarity=0.059 Sum_probs=166.7 Q ss_pred CCE-EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC----CCCCCCCHHH Q ss_conf 856-89999789629776439983075269899999999851357777876603517877200366----4434510123 Q gi|254780435|r 28 LPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTM 102 (336) Q Consensus 28 a~~-~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s----~~~l~~g~~~ 102 (336) ++. ..+.|.++|+. +++|+|+++||||++|+|+++.+++++++|+++||+.|++++.....+++ ...+..|+.+ T Consensus 18 ~~~gv~v~~~~~~~~-~~~n~~~~~~~AS~~Kl~~a~~~l~~i~~g~l~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (282) T 1e25_A 18 ATVGVAVWGPDDLEP-LLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSV 96 (282) T ss_dssp SEEEEEEECTTCSSC-EEESTTCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEEETTTSCCSSCCTHHHHSCSSEEEE T ss_pred CCEEEEEEECCCCEE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHEEECCCCEE T ss_conf 959999998999818-9988998455489999999999999987599883100257688874168874200210799805 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHH Q ss_conf 467776767774235899999764011178999999999987098353441235764------62222569999999898 Q gi|254780435|r 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWR 176 (336) Q Consensus 103 tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~ 176 (336) |++||+++|++.|+|+||.+|++.++| .+.||+.++++|+++++|.++.|.. +.+|++||+||++|.++ T Consensus 97 t~~~Ll~~mi~~SdN~Aa~~L~~~lgg-----~~~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~Ta~d~~~ll~~ 171 (282) T 1e25_A 97 PVQQLLQYSVSHSDNVACDLLFELVGG-----PAALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWTSMKGAAEILKK 171 (282) T ss_dssp EHHHHHHHHHHHCCHHHHHHHHHHHTH-----HHHHHHHHHHTTCCSBCCCCCHHHHHHCTTGGGGSEECHHHHHHHHHH T ss_pred EHHHHHHHHHHHCCHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 699999999995951999999998288-----468999999830343123466445565557874213319999999999 Q ss_pred HHHHHHHHHCCCCEEECCC--CCEEEEECCCCCCCCCCEEEEEEECCHHHHHE-----EEEEEE-ECCEEEEEEEECCC- Q ss_conf 7631233110123020001--74478601456566897115332124112000-----234564-28868999983789- Q gi|254780435|r 177 IKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN-----IVASAI-QGDQSLIAVILGAL- 247 (336) Q Consensus 177 ~~~~~p~~~~~~~~~~~~~--~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~-----lv~~a~-~~g~~li~Vvlg~~- 247 (336) +..+ +.+..........+ ........++.........+.|||+....|.. .++.+. .+|++++++|+... T Consensus 172 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ktG~~~~~gg~~g~~~d~giv~~~~g~~~iiaV~~~~~ 250 (282) T 1e25_A 172 FEQK-TQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDS 250 (282) T ss_dssp HHTT-CSSCHHHHHHHHHHHHSCCSCTTSTTTTSCTTCCEEEEEEECCEETTEEEEEEEEEEEECTTSCEEEEEEEEEEE T ss_pred HHHC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCC T ss_conf 9848-866888999999998548644433123488887543214764546875348998999986999989999994599 Q ss_pred --CHHHHH----HHHHHHHHHHHHHCC Q ss_conf --866789----999999999985145 Q gi|254780435|r 248 --DRNTRN----KVSASLLSMGFYNKT 268 (336) Q Consensus 248 --~~~~r~----~~~~~Ll~~~f~~f~ 268 (336) +...+. +-++.+++|.++... T Consensus 251 ~~~~~~~~~~i~~i~~~~~~~~~~~~~ 277 (282) T 1e25_A 251 AESSRTNEAIIAQVAQTAYQFELKKLS 277 (282) T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 889889999999999999998865035 No 29 >3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583} Probab=100.00 E-value=9.2e-32 Score=211.70 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=164.2 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC-CCCCCCCHHHHHHHHH Q ss_conf 689999789629776439983075269899999999851357777876603517877200366-4434510123467776 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-NSTFKKGSTMTLDNAL 108 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s-~~~l~~g~~~tv~dll 108 (336) +..++|.+||++ ++.|+|+++||||++|+|+++.+++++++|+++||++|++++.....+++ .+.+.+|+.+|++||+ T Consensus 53 ~v~~~dl~tg~~-~~~n~~~~~~~AS~~Kl~~~~~~l~~v~~G~l~l~~~v~~~~~~~~~~~~~~~~~~~g~~~sl~dLl 131 (282) T 3cjm_A 53 GISYLDLETGEQ-RSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQ 131 (282) T ss_dssp EEEEEETTTCCE-EEESTTCCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCHHHHCCCSSCSGGGSCCSEEEHHHHH T ss_pred EEEEEECCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCCCEEECCCCEEEHHHHH T ss_conf 999998999988-8888998422188899999999999997499887772686189961589862572589826699999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHH Q ss_conf 7677742358999997640111789999999999870983534412357646222256999999989876312---3311 Q gi|254780435|r 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQYM 185 (336) Q Consensus 109 ~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~---p~~~ 185 (336) ++||+.|+|+||++|++++||+.. +|++..++|+.++.+. ..|.+|++|++.+..++..+. |... T Consensus 132 ~~mi~~SdN~Aan~L~~~lGg~~~-----~~~~~~~~g~~~~~~~-------~~~~~T~~d~~~ll~~l~~~~~~~~~~~ 199 (282) T 3cjm_A 132 EYAITYSDNIAKNMLYDTLGGDAK-----AKREMYQRYLHKTPSI-------EEPQFSSEDALVILQKLYTEKATKPDYQ 199 (282) T ss_dssp HHHHHTCCHHHHHHHHHHTTCHHH-----HHHHHHHHHTSCCCCS-------SSCEECHHHHHHHHHHHHHHTTTCHHHH T ss_pred HHHHHHCCHHHHHHHHHHHCCCHH-----HHHHHHHCCCCCCCCC-------CCCCCCHHHHHHHHHHHHCCCCCCHHHH T ss_conf 999984126999999998298499-----9999997057668875-------5677789999999999974877886899 Q ss_pred CCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHH-----HHHHHH Q ss_conf 0123020001744786014565-6689711533212411200023456428868999983789866789-----999999 Q gi|254780435|r 186 HYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-----KVSASL 259 (336) Q Consensus 186 ~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~-----~~~~~L 259 (336) .+... -..... .+++- +-.++..+.|||+++.+ +|.++....++ ++|+|||.....+.+. +-++.+ T Consensus 200 ~l~~~-----l~~~~~-~~~l~~~lp~~~va~KtG~~~~~-~~d~giV~~~~-~yiiav~t~~~~~~~~~~~i~~is~~i 271 (282) T 3cjm_A 200 AIYDS-----MKQSVF-HERMETPTTQGKVAHKIGSYDEF-IHDMGILETPH-PFALAIFTKGPDNAKSAAFIASVTDKL 271 (282) T ss_dssp HHHHH-----HHSCSC-CCTTCCTTTTTSEEEEEEEETTE-EEEEEEECSSS-CEEEEEEEECSCHHHHHHHHHHHHHHH T ss_pred HHHHH-----HHCCCC-CCCHHCCCCCCCEEEEECCCCCC-EEEEEEEECCC-CEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 99999-----844778-73110258878068620265770-47899995799-889999947998078999999999999 Q ss_pred HHHHHHHCCC Q ss_conf 9999851453 Q gi|254780435|r 260 LSMGFYNKTD 269 (336) Q Consensus 260 l~~~f~~f~~ 269 (336) ++|.+++|+. T Consensus 272 y~~~~~~~~~ 281 (282) T 3cjm_A 272 WQLQVSEYPN 281 (282) T ss_dssp HHHHHHSCCC T ss_pred HHHHHHCCCC T ss_conf 9977642799 No 30 >1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A Probab=99.97 E-value=7.8e-31 Score=206.02 Aligned_cols=232 Identities=14% Similarity=0.039 Sum_probs=165.1 Q ss_pred CCCC-EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4785-689999789629776439983075269899999999851357777876603517877200366443451012346 Q gi|254780435|r 26 NKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 (336) Q Consensus 26 ~~a~-~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv 104 (336) ..++ +..++|++||+++ ++|+|+++||||++|+|+++.++++++.|+ ||+.++++......+++.....+|+.+++ T Consensus 11 ~~~~~gv~~~d~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~g~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (258) T 1ghp_A 11 YNAHIGVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITL 87 (258) T ss_dssp TTCEEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHSCGGG--GGCEEEECGGGCCSSCTTGGGGTTEEEEH T ss_pred CCCEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEHHHHCCCCCCEEECCCCCEEH T ss_conf 098699999989999889-988997184689999999999999745689--98438974665227997423248982209 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC-------CCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 77767677742358999997640111789999999999870983534412-------35764622225699999998987 Q gi|254780435|r 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-------AHGVVQHGHYTTARDMAILSWRI 177 (336) Q Consensus 105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n-------~~Gl~~~~~~tTa~Dla~l~~~~ 177 (336) +|++++|++.|+|+||.+|+++++|. +.||..++++|+.+|++.+ +.+ .+..|.+||+|++.+.+++ T Consensus 88 ~~ll~~mi~~SdN~aa~~l~~~l~~~-----~~~~~~~~~~~~~~t~l~~~~~~~~~~~~-~~~~~~tTa~d~a~ll~~l 161 (258) T 1ghp_A 88 KALIEASMTYSDNTANNKIIKEIGGI-----KKVKQRLKELGDKVTNPVRYDIELQYYSP-KSKKDTSTPAAFGKTLNKL 161 (258) T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCH-----HHHHHHHHHTTCCSCBCCSCTTGGGCCCT-TCCTTEECHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCC-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH T ss_conf 99999998616599999999981893-----78899999626143224776675568889-9855654899999999999 Q ss_pred HHHHHHHHCCCCEEECCCCCEEEE--ECCCCCCCCCCEEEEEEECCHHHH-HEEEEEEEECCE--EEEEEEEC-CCC--H Q ss_conf 631233110123020001744786--014565668971153321241120-002345642886--89999837-898--6 Q gi|254780435|r 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQGDQ--SLIAVILG-ALD--R 249 (336) Q Consensus 178 ~~~~p~~~~~~~~~~~~~~~~~~~--N~N~ll~~~~gv~G~KTG~t~~AG-~~lv~~a~~~g~--~li~Vvlg-~~~--~ 249 (336) ....+ +.+..+.....+-..... +.++.........+.|||+++.+| ++.++.+...++ +++++|+. .++ . T Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~~~vi~V~~~~~~~~~ 240 (258) T 1ghp_A 162 IANGK-LSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSD 240 (258) T ss_dssp TTSSS-SCHHHHHHHHHHHHHCGGGTTTHHHHSCTTSEEEEEEEECSSTTCEEEEEEEECTTCCSCEEEEEEEECSSTTC T ss_pred HHCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCH T ss_conf 74886-42688999999985482140123434798875887774887765278999999899974899999917998686 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 678999999999998514 Q gi|254780435|r 250 NTRNKVSASLLSMGFYNK 267 (336) Q Consensus 250 ~~r~~~~~~Ll~~~f~~f 267 (336) ..|..-...+-...|+.| T Consensus 241 ~~~~~li~~is~~~~~~f 258 (258) T 1ghp_A 241 KPNDKLISETAKSVMKEF 258 (258) T ss_dssp CCCHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999739 No 31 >1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1 Probab=99.96 E-value=6.6e-29 Score=194.29 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=147.2 Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644345101234677767 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~ 109 (336) +..++|.+||+++ +.|+|+++||||++|+|+++.++++++.|+ ||+.++++++....+++.+...+|+.+|++||+. T Consensus 61 gv~~~D~~tG~~~-~~n~d~~~~~ASt~Kl~~a~~~l~~v~~g~--ld~~v~i~~~~~~~~~~~~~~~~g~~~tl~dll~ 137 (266) T 1alq_A 61 GVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIE 137 (266) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHSSCGGG--TTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999999999888-888998353478999999999999720478--7751675388863369731046897235999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67774235899999764011178999999999987098353441235764------622225699999998987631233 Q gi|254780435|r 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 110 ~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) +|++.|+|+||++|++++|| .+.||++++++|+++|++.+..+.. +..|++||+||+++.+++... +. T Consensus 138 ~mi~~SdN~Aa~~L~~~lGg-----~~~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~~-~~ 211 (266) T 1alq_A 138 ASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN-GK 211 (266) T ss_dssp HHHHHCCHHHHHHHHHHHTC-----HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTS-SS T ss_pred HHHHCCHHHHHHHHHHHHCC-----CHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CC T ss_conf 87754879999999999776-----1689999997473227626777655567778744444999999999999857-87 Q ss_pred HHCCCCEEECCCCCEEEEECCCCCCC-C-C-CEEEEEEECCHHHH-HEEEE Q ss_conf 11012302000174478601456566-8-9-71153321241120-00234 Q gi|254780435|r 184 YMHYFQIKGLEIKGKKYPNTNWAVGT-F-L-GADGMKTGFTCASG-FNIVA 230 (336) Q Consensus 184 ~~~~~~~~~~~~~~~~~~N~N~ll~~-~-~-gv~G~KTG~t~~AG-~~lv~ 230 (336) +..-....-..+- ....+.|.+|.. . + ...|.|||++...| +|-++ T Consensus 212 ls~~~~~~l~~~m-~~~~~~~~~l~~~lP~~~~Va~KTGt~~~~G~~~D~a 261 (266) T 1alq_A 212 LSKENKKFLLDLM-LNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVA 261 (266) T ss_dssp CCHHHHHHHHHHH-HTCGGGTTTHHHHSCTTCEEEEEEEECSSTTCEEEEE T ss_pred CCHHHHHHHHHHH-HCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEE T ss_conf 8999999999999-6396443005543999988999650577677621599 No 32 >2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi} Probab=99.91 E-value=4.8e-23 Score=158.57 Aligned_cols=208 Identities=16% Similarity=0.075 Sum_probs=147.4 Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC--CCCCCCCHHHHHHH Q ss_conf 5689999789629776439983075269899999999851357777876603517877200366--44345101234677 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS--NSTFKKGSTMTLDN 106 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s--~~~l~~g~~~tv~d 106 (336) -+.+|+|.+||++| ..|+|+++||||++|+||++.+|+.+++|++++|+.|..+.......++ ......|..+++.+ T Consensus 22 ~~~~V~D~~tG~~l-a~n~d~~~~pgSt~K~~ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 100 (318) T 2wuq_A 22 GSFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSRFRHPARVAVDD 100 (318) T ss_dssp EEEEEEETTTCCEE-EESTTCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCGGGGCSSCEEEEHHH T ss_pred EEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 99999999899889-98899737379799999999999876549978754566403531379974013578887403999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------------------------- Q ss_conf 76767774235899999764011178999999999987098353441235764--------------------------- Q gi|254780435|r 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------------------- 159 (336) Q Consensus 107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------------------------- 159 (336) ++..++..|.|+++..|++.++ .+.++..++++|+.++.+.+.-+.. T Consensus 101 ~~~~~~~~S~n~a~~~l~~~~g------~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (318) T 2wuq_A 101 LLYLSTSVSDGTASDALFEITP------PAQVEQMVREWGFRDLTVRHSMRELSETPAERFESADAHLAHALAISAGTSG 174 (318) T ss_dssp HHHHHHHSCCHHHHHHHHHHSC------HHHHHHHHHHTTCCSCCCCCCTTC---------------------------- T ss_pred HHHHHHHHCCCHHHHHHHHHCC------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHH T ss_conf 9999998277226677887529------9987547887088764465666545666555555202456664236565767 Q ss_pred ----------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE-E-CCCCC----EE--EE--ECCCCC---CCCCCEEEE Q ss_conf ----------62222569999999898763123311012302-0-00174----47--86--014565---668971153 Q gi|254780435|r 160 ----------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-G-LEIKG----KK--YP--NTNWAV---GTFLGADGM 216 (336) Q Consensus 160 ----------~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~-~-~~~~~----~~--~~--N~N~ll---~~~~gv~G~ 216 (336) +.++.+|++|++.+..++..... ........ . ..... +. .. +...+. .......+. T Consensus 175 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~g~~~~~~~~~g~~vag 253 (318) T 2wuq_A 175 RGHRVPQLDVARANTGTARAFVDLLEALWAPVL-TGPRPGRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWSS 253 (318) T ss_dssp --CCSGGGCTTTSCEECHHHHHHHHHHHHGGGC-CCC-------CCCHHHHHHHHHHHHTCCCCSSSHHHHCBTTEEEEE T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE T ss_conf 899999998528830348999999975025654-5566543345679999999999987346488720134789988999 Q ss_pred EEECCHHHHHEEEEEE-EECCEEEEEEEEC Q ss_conf 3212411200023456-4288689999837 Q gi|254780435|r 217 KTGFTCASGFNIVASA-IQGDQSLIAVILG 245 (336) Q Consensus 217 KTG~t~~AG~~lv~~a-~~~g~~li~Vvlg 245 (336) |||+++.. ++.++.+ ..||++++++|+. T Consensus 254 KTGT~~~~-~~~~~~~~~~d~~~~~v~V~~ 282 (318) T 2wuq_A 254 KTGTLLNL-RHEVGVVEHADGQVFAVAVLT 282 (318) T ss_dssp EEEEETTE-EEEEEEEEETTSCEEEEEEEE T ss_pred EEECCCCC-CEEEEEEECCCCCEEEEEEEE T ss_conf 80257783-166999996898949999998 No 33 >3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* Probab=99.71 E-value=6.1e-15 Score=109.22 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=105.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHH Q ss_conf 2346777676777423589999976401-------11789999999999870983--53441235764622225699999 Q gi|254780435|r 101 TMTLDNALKLLIVKSANDIAVAIAESLC-------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMA 171 (336) Q Consensus 101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~-------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla 171 (336) +-++.+++..|+-.|.|-.|..|...++ ++.+.-...|.+..+++|+. +.++.+.+|| ...|..||++|. T Consensus 270 S~pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGL-Sr~N~it~~~l~ 348 (453) T 3a3d_A 270 SKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGIRFGNSILADGSGL-SRHNLVAPKTML 348 (453) T ss_dssp CCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTTCCCTTCBCCCSSSC-CTTCBBCHHHHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCCCCCHHHHH T ss_conf 7209999999984597189999999998874589860778898888899972999765255277777-734431899999 Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEE Q ss_conf 99898763123311012302000174478601456566-897115332124112000234564-28868999983 Q gi|254780435|r 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVIL 244 (336) Q Consensus 172 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvl 244 (336) .+..++. +.|.+..+...--+.....++.++..+... -.|-.-.|||+.+.. .||++... ++|++++.++| T Consensus 349 ~lL~~~~-~~~~~~~~~~sLpv~G~~Gtl~~r~~~~~~~~~g~v~aKTGtL~~v-~sLaGyi~~~~G~~~~fsi~ 421 (453) T 3a3d_A 349 SVLEYIA-KNEDKLHLMETFPIAGVDGTISGRGGLISPPLVKNVIAKTGSLKGV-YNLAGFMTNARGEKVAFVQF 421 (453) T ss_dssp HHHHHHH-HTHHHHCCGGGSCBTTTSGGGTTCGGGSSTTTTTTCEEEEEEETTE-EEEEEEEECTTSCEEEEEEE T ss_pred HHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEEEECCCCCEEEEEEE T ss_conf 9999987-5952789997388057777545656556777668499987263784-58799999699899999999 No 34 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* Probab=99.61 E-value=9.1e-14 Score=102.03 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=102.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHH Q ss_conf 12346777676777423589999976401------11789999999999870983--53441235764622225699999 Q gi|254780435|r 100 STMTLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMA 171 (336) Q Consensus 100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla 171 (336) +.-++.++++.|+-.|.|-.|.+|...++ |+.+.-.+.|.+..+++|+. +.++.|-||| ...|..||++|+ T Consensus 284 ~S~pL~~lv~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~l~~~gi~~~~~~l~DGSGL-Sr~Nrisp~~l~ 362 (462) T 1w5d_A 284 RSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGI-SHIDAVSSDQLS 362 (462) T ss_dssp ECCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHGGGGTCCGGGCBCSCSSSC-CTTCBBCHHHHH T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCCHHHHH T ss_conf 2711999999998438729999999999997379986688999999999972788665277558878-755652999999 Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCC-------EEEEECCCCCC-CCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEE Q ss_conf 99898763123311012302000174-------47860145656-6897115332124112000234564-288689999 Q gi|254780435|r 172 ILSWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAV 242 (336) Q Consensus 172 ~l~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~N~N~ll~-~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~V 242 (336) .+..++. +.|.+..+... +...| .++.| ++-. .-.|..-.|||+.+. -.||++... ++|++++.+ T Consensus 363 ~lL~~~~-~~~~~~~~~~s--LPvaG~~~~~v~GTL~~--R~~~~~~~g~v~aKTGTL~~-v~aLaGyv~t~~G~~~~Fs 436 (462) T 1w5d_A 363 QLLYDIQ-DQSWFSAYLNS--LPVAGNPDRMVGGTLRN--RMKGTPAQGKVRAKTGSLST-VSSLSGYAETKSGKKLVFS 436 (462) T ss_dssp HHHHHHT-TSTTHHHHHHH--SCBTTCSSHHHHGGGTT--SSTTSTTTTTEEEEEEEETT-EEEEEEEEECSSSCEEEEE T ss_pred HHHHHHH-HCCCHHHHHHH--CCCCCCCCCCCCCCHHH--HCCCCCCCCEEEEEEEEECC-CEEEEEEEECCCCCEEEEE T ss_conf 9999988-59207899972--98478878776872565--42478767749999752389-4685899998998999999 Q ss_pred EECC Q ss_conf 8378 Q gi|254780435|r 243 ILGA 246 (336) Q Consensus 243 vlg~ 246 (336) +|-. T Consensus 437 i~~N 440 (462) T 1w5d_A 437 ILLN 440 (462) T ss_dssp EEEE T ss_pred EEEC T ss_conf 9957 No 35 >2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* Probab=99.57 E-value=3e-13 Score=98.86 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=98.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHH-HHHCCC--CCCEEECCCCCCCCCCCCCHHHH Q ss_conf 23467776767774235899999764011-------178999999999-987098--35344123576462222569999 Q gi|254780435|r 101 TMTLDNALKLLIVKSANDIAVAIAESLCK-------TEKKFVQHMNNT-SKNLGL--SATHFMNAHGVVQHGHYTTARDM 170 (336) Q Consensus 101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~G-------s~~~Fv~~MN~~-a~~lG~--~~T~f~n~~Gl~~~~~~tTa~Dl 170 (336) +-++.++++.|+..|.|-+|.+|...+|+ +.......+.+. ..++|+ .+..+.|.+|| ...|..||++| T Consensus 273 S~pL~~l~~~m~~~SdN~~Ae~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dgSGL-Sr~n~~t~~~~ 351 (458) T 2ex2_A 273 SAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGL-SRHNLIAPATM 351 (458) T ss_dssp CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTSCCCCTTCBCCCSSSC-CTTCBBCHHHH T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC-CCCCCCCHHHH T ss_conf 77799999998535827999999999988744898726679999999999860888655243047887-65565599999 Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC-CCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEEC Q ss_conf 9998987631233110123020001744786014565-66897115332124112000234564-288689999837 Q gi|254780435|r 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG 245 (336) Q Consensus 171 a~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll-~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg 245 (336) ..+..++. ..|.+..+...--......++.++..+- ....|..-.|||+.+. -.|+++... ++|++++.++|- T Consensus 352 ~~~L~~~~-~~~~~~~~~~~lpi~g~~Gtl~~r~~~~~~~~~g~v~aKTGtl~~-v~~laGyv~~~~g~~~~fai~~ 426 (458) T 2ex2_A 352 MQVLQYIA-QHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSLQG-VYNLAGFITTASGQRMAFVQYL 426 (458) T ss_dssp HHHHHHHH-HTHHHHCCGGGSCBTTTSGGGTTCHHHHHTTCTTTEEEEEEEETT-EEEEEEEEECTTSCEEEEEEEE T ss_pred HHHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-CEEEEEEEECCCCCEEEEEEEE T ss_conf 99999988-496247899738824676765665555668878869995553368-6798999997998999999996 No 36 >1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A* Probab=99.52 E-value=2.8e-12 Score=92.94 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=96.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 46777676777423589999976401------11789999999999870983--53441235764622225699999998 Q gi|254780435|r 103 TLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTARDMAILS 174 (336) Q Consensus 103 tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336) ++.++++.|+-.|.|-.|..|...++ |+.+.-...|.+..+++|+. +.++.|-+|| ...|..||++|..+. T Consensus 286 pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~~~~~~~~~l~~~gi~~~~~~l~DGSGL-Sr~nriSp~~l~~lL 364 (489) T 1w79_A 286 ELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGL-SRGNLVTADTVVDLL 364 (489) T ss_dssp EHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTCCCTTCBCSCSSSC-STTCBBCHHHHHHHH T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCHHHHHHHH T ss_conf 8999999998636659999999999997448997789999999999865898567477058878-866665999999999 Q ss_pred HHHHHHHHHHHCCCCEEECCCCC-------EEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEE-CCEEEEEEEEC Q ss_conf 98763123311012302000174-------478601456566-8971153321241120002345642-88689999837 Q gi|254780435|r 175 WRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILG 245 (336) Q Consensus 175 ~~~~~~~p~~~~~~~~~~~~~~~-------~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~-~g~~li~Vvlg 245 (336) .++. +.|.+..+... +...| .|+. |++... -.|..-.|||+... -.+|++.... +|+ ++.+++- T Consensus 365 ~~~~-~~~~~~~~~~s--LPiaG~~~~~vdGTL~--~R~~~~~~~g~v~aKTGTL~~-V~sLaGyv~~~~G~-l~Fsi~~ 437 (489) T 1w79_A 365 GQAG-SAPWAQTWSAS--LPVAGESDPFVGGTLA--NRMRGTAAEGVVEAKTGTMSG-VSALSGYVPGPEGE-LAFSIVN 437 (489) T ss_dssp HHHH-TSTTHHHHHHH--SCBTTCSSHHHHGGGT--TSSTTSTTTTTCEEECCEETT-EEEEEEEECCTTCC-EEEEEEE T ss_pred HHHH-HCCCHHHHHHH--CCCCCCCCCCCCCCHH--HHCCCCCCCCEEEEEEEEECC-CEEEEEEEECCCCC-EEEEEEE T ss_conf 9988-59317899973--8857887777787556--642478767849999850069-47838999969998-9999997 No 37 >3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae} Probab=99.34 E-value=9.9e-11 Score=83.55 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=116.5 Q ss_pred EEEEEECCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC-CCHHHHHHH Q ss_conf 689999789629776--43998307526989999999985135777787660351787720036644345-101234677 Q gi|254780435|r 30 YYTLLDTNTGHVIAE--NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-KGSTMTLDN 106 (336) Q Consensus 30 ~~i~~d~~tG~iL~~--kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~-~g~~~tv~d 106 (336) +.+++|.++|+++.. .-+.++++|||+-|++|++.+|| .|.++.++.+... ++..-... ....+++++ T Consensus 43 ~~vi~d~~~~~~~~~~~nRA~~~~~PgSTFKi~~a~aaLe---~G~i~~~~~~~~~------~g~~~~~~~~~~~~tl~~ 113 (265) T 3hbr_A 43 VVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALD---LGVVKDEHQVFKW------DGQTRDIATWNRDHNLIT 113 (265) T ss_dssp EEEEEETTTTEEEESCHHHHTCEECCGGGGHHHHHHHHHH---TTSSCCTTCCBCC------CSCCCSSGGGSSCBCHHH T ss_pred EEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEECC------CCCCCCCCCCCCCCCHHH T ss_conf 8999988999577506656527889973389999999998---6985997704418------995655887589989999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHH Q ss_conf 767677742358999997640111789999999999870983534412357646-----222256999999989876312 Q gi|254780435|r 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDF 181 (336) Q Consensus 107 ll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-----~~~~tTa~Dla~l~~~~~~~~ 181 (336) .|..|.|.+..-|++.+| .+.|.+.++++|..+-.. .|..+ .+...|+.+|+.+...+..+- T Consensus 114 ----Al~~S~N~~f~~l~~~iG------~~~~~~~~~~~G~G~~~~---~~~~~~~w~~g~l~iTPlq~a~~~~~ian~~ 180 (265) T 3hbr_A 114 ----AMKYSVVPVYQEFARQIG------EARMSKMLHAFDYGNEDI---SGNVDSFWLDGGIRISATEQISFLRKLYHNK 180 (265) T ss_dssp ----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCTTCCC----CCTTTHHHHSSCCEEHHHHHHHHHHHHTTC T ss_pred ----HHHHCCHHHHHHHHHHHC------CHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCEEECHHHHHHHHHHHHHCC T ss_conf ----999708099999977729------377899999869999888---9886644037970010899999999998399 Q ss_pred HHHHCCCCEEECCC-CCEEEEECCCCCCCCCCEEEEEEECCHHHHHE---EEEEEEECCEEEEEEEEC Q ss_conf 33110123020001-74478601456566897115332124112000---234564288689999837 Q gi|254780435|r 182 PQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN---IVASAIQGDQSLIAVILG 245 (336) Q Consensus 182 p~~~~~~~~~~~~~-~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~---lv~~a~~~g~~li~Vvlg 245 (336) ..+.. ..... ........ ...+..++|||+....+.. +|+.+..++.+++.+|+- T Consensus 181 ~~~s~----~~~~~v~~~m~~~~-----~~g~~vaGKTGTa~~~~~~~~WfvG~~~~~~~~~~~av~i 239 (265) T 3hbr_A 181 LHVSE----RSQRIVKQAMLTEA-----NGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNM 239 (265) T ss_dssp SSSCH----HHHHHHHHHTEEEE-----CSSCEEEEEEEEECSSSSCEEEEEEEEECSSCEEEEEEEE T ss_pred CCCCH----HHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 68888----99999999988633-----1580578510355468998689999998799869999997 No 38 >2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A* Probab=99.19 E-value=1.3e-09 Score=76.71 Aligned_cols=186 Identities=11% Similarity=0.038 Sum_probs=115.3 Q ss_pred CEEEEEECCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHH Q ss_conf 5689999789629776439---9830752698999999998513577778766035178772003664434-51012346 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENYP---DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTL 104 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn~---~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv 104 (336) -+++++|..||+++. -|. .++++|+|+-|++|++.+|| +|.++.++.+... ++..... .....+++ T Consensus 24 G~~v~~d~~tg~~~~-~n~~~~~~~y~PGStfK~~t~~aaLe---~g~~~~~~~~~~~------~~~~~~~~~~~g~~~l 93 (246) T 2iwb_A 24 GSFVLYNEREQAYSI-YNEPESKQRYSPNSTYKIYLALMAFD---QNLLSLNHTEQQW------DKHQYPFKEWNQDQNL 93 (246) T ss_dssp EEEEEEETTTTEEEE-ESHHHHTBCBCCGGGGHHHHHHHHHH---TTSSBTTBCCBCC------CCCCCSSGGGSSCBCH T ss_pred EEEEEEECCCCCEEE-ECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCC------CCCCCCCCCCCCCCCH T ss_conf 469999789996760-58889668779963699999999998---4997885434169------9866178988997077 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHH-- Q ss_conf 7776767774235899999764011178999999999987098353441235-7646222256999999989876312-- Q gi|254780435|r 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH-GVVQHGHYTTARDMAILSWRIKTDF-- 181 (336) Q Consensus 105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~-Gl~~~~~~tTa~Dla~l~~~~~~~~-- 181 (336) ++. |..|+|.+..-|++.+| .+.|.+.++.+|+.+.....+. ++...+-..|+.+|+.+...+...- T Consensus 94 ~~A----l~~S~N~~~~~la~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~iTPlqma~~~~~ian~g~~ 163 (246) T 2iwb_A 94 NSS----MKYSVNWYYENLNKHLR------QDEVKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMH 163 (246) T ss_dssp HHH----HHTTCHHHHHHHHTTSC------HHHHHHHHHHHTCTTCCCCSCSSTTSSSSCCBCHHHHHHHHHHHHTTCSS T ss_pred HHH----HHCCCHHHHHHHHHHCC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 884----22456299999998728------60789999982899998898764222687525699999999999838967 Q ss_pred --HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH--EEEEEEEECCEEEEEEEE Q ss_conf --331101230200017447860145656689711533212411200--023456428868999983 Q gi|254780435|r 182 --PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF--NIVASAIQGDQSLIAVIL 244 (336) Q Consensus 182 --p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~--~lv~~a~~~g~~li~Vvl 244 (336) |+..+.... ....... ..+...-+.|||.+..... -||+.+..++.+++++|+ T Consensus 164 ~~p~~~~~~~~------~~~~~~~----~~~~~~~ktgTg~~~~~~~~aWFvGf~p~~~p~~~~~v~ 220 (246) T 2iwb_A 164 FDNKAIEKVEN------SMTLKQK----DTYKYVGKTGTGIVNHKEANGWFVGYVETKDNTYYFATH 220 (246) T ss_dssp SCHHHHHHHHH------HTEEEEC----SSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE T ss_pred CCCHHHHHHHH------HHHHHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 88325567777------7777654----234432110104468988788999999889995999999 No 39 >1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A* Probab=99.18 E-value=2.8e-09 Score=74.73 Aligned_cols=207 Identities=11% Similarity=0.006 Sum_probs=122.8 Q ss_pred CEEEEEECCCCEEEEEEC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHH Q ss_conf 568999978962977643----99830752698999999998513577778766035178772003664434-5101234 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY----PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMT 103 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn----~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~t 103 (336) -+.+++|..||++++--+ +.++++|+|+-|++|++.+|| +|.++.++.+... ++..... .....++ T Consensus 21 G~~vv~D~~tg~~~a~~~n~~~a~~~y~PGSTfK~~~~~aaLe---~G~i~~~~~~~~~------~~~~~~~~~~~g~~t 91 (254) T 1k38_A 21 GTIVVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALD---AGAVRDEFQIFRW------DGVNRGFAGHNQDQD 91 (254) T ss_dssp EEEEEEECSSSSCCCEEESHHHHTCCBCCGGGGHHHHHHHHHH---HTSCCSTTCCBCC------CSCCCSCTTTSSCBC T ss_pred EEEEEEECCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCC------CCCCCCCCCCCCCCC T ss_conf 8999998999857886149899668889972899999999998---4985432113468------987678888899979 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--CCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67776767774235899999764011178999999999987098353441235764--6222256999999989876312 Q gi|254780435|r 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDF 181 (336) Q Consensus 104 v~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--~~~~~tTa~Dla~l~~~~~~~~ 181 (336) +++. |..|.|-...-|++.+| .+.|.+.++.+|+.+.......+.. ..+-..|+.+|+.+...+..+- T Consensus 92 l~~A----l~~S~N~~f~~la~~lG------~~~~~~~~~~~G~G~~~~~~~~~~~~~~g~~~itPlq~a~~~~~ian~g 161 (254) T 1k38_A 92 LRSA----MRNSTVWVYELFAKEIG------DDKARRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRNE 161 (254) T ss_dssp HHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCC--CCTTTTSSCCBCHHHHHHHHHHHHTTC T ss_pred HHHH----HHHCCHHHHHHHHHHHC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 9999----99739399999999819------0889999998599999887653440017874375999999999997699 Q ss_pred ----HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEE-CCCCHHHHHHHH Q ss_conf ----331101230200017447860145656689711533212411200023456428868999983-789866789999 Q gi|254780435|r 182 ----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVS 256 (336) Q Consensus 182 ----p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvl-g~~~~~~r~~~~ 256 (336) |...+.... . -+.-. ...+..++|||++...|+ ||+.+..++.++..+|+ ..+....-..-. T Consensus 162 ~~~~~~~~~~~~~----~-~~~~~-------~~g~~vaGKTGTa~~~~W-FvG~~p~~~p~~~~av~i~~~~~~~~~~~a 228 (254) T 1k38_A 162 LPFRVEHQRLVKD----L-MIVEA-------GRNWILRAKTGWEGRMGW-WVGWVEWPTGSVFFALNIDTPNRMDDLFKR 228 (254) T ss_dssp SSSCHHHHHHHHH----H-TEEEE-------ETTEEEEEEEEESSSEEE-EEEEEEETTEEEEEEEEEECTTGGGGTHHH T ss_pred EECCHHHHHHHHH----H-HHHHH-------HCCCEEEEEECCCCCCEE-EEEEEECCCCEEEEEEEEECCCCCCCHHHH T ss_conf 4058006799999----9-98834-------259757776368986768-999998699869999999779997728999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998514 Q gi|254780435|r 257 ASLLSMGFYNK 267 (336) Q Consensus 257 ~~Ll~~~f~~f 267 (336) ..+....|+.. T Consensus 229 ~~i~~~il~~l 239 (254) T 1k38_A 229 EAIVRAILRSI 239 (254) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHC T ss_conf 99999999984 No 40 >1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1 Probab=99.18 E-value=1.3e-09 Score=76.75 Aligned_cols=183 Identities=9% Similarity=0.042 Sum_probs=116.9 Q ss_pred EEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHHH Q ss_conf 68999978962977643---99830752698999999998513577778766035178772003664434-510123467 Q gi|254780435|r 30 YYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTLD 105 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv~ 105 (336) +.+++|.+||+++. -| +.++++|+|+-|++|+..+|| .|.++.++.+... ++..... .....+++ T Consensus 36 ~~vv~d~~tg~~~~-~n~n~~~~~~~PGSTfK~~~~~aaLe---~g~~~~~~~~~~~------~~~~~~~~~~~g~~~l- 104 (262) T 1nrf_A 36 GFVLFNSNRKKYTI-YNRKESTSRFAPASTYKVFSALLALE---SGIITKNDSHMTW------DGTQYPYKEWNQDQDL- 104 (262) T ss_dssp EEEEEETTTTEEEE-ECHHHHHSCBCCGGGGHHHHHHHHHH---HTSSCSSCCCBCC------CCCCCSSTTTSSCBCH- T ss_pred EEEEEECCCCCEEE-ECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEECC------CCCCCCCCCCCCCCCH- T ss_conf 89999899997863-19899757789975289999999998---5999998745659------9850367888999799- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHH--- Q ss_conf 7767677742358999997640111789999999999870983534412357-646222256999999989876312--- Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-VVQHGHYTTARDMAILSWRIKTDF--- 181 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G-l~~~~~~tTa~Dla~l~~~~~~~~--- 181 (336) ...+..|.|-++.-|+..+| .+.|.+.++.+|+.+.....|.. +.......|+..|+.+...+..+- T Consensus 105 ---~~Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G~~~ 175 (262) T 1nrf_A 105 ---FSAMSSSTTWYFQKLDRQIG------EDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDF 175 (262) T ss_dssp ---HHHHHHTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTTTCC T ss_pred ---HHHHHHCCCHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCC T ss_conf ---99999757098852324258------578999999839999888986378747975523999999999995468877 Q ss_pred -HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH----EEEEEEEECCEEEEEEEE Q ss_conf -331101230200017447860145656689711533212411200----023456428868999983 Q gi|254780435|r 182 -PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF----NIVASAIQGDQSLIAVIL 244 (336) Q Consensus 182 -p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~----~lv~~a~~~g~~li~Vvl 244 (336) |++.+.... ..+ ......+..++|||+....|. -+|+.+..++.+++++|+ T Consensus 176 ~p~~~~~~~~-----~~~-------~~~~~~~~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~ 231 (262) T 1nrf_A 176 KQSNIETVKD-----SIR-------LEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVH 231 (262) T ss_dssp CHHHHHHHHH-----HHE-------EEEETTEEEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEE T ss_pred CHHHHHHHHH-----HHH-------HHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE T ss_conf 8899999987-----876-------6544123356640254368998628999999879985999999 No 41 >1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes} Probab=99.07 E-value=1.8e-08 Score=69.82 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=83.9 Q ss_pred CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH Q ss_conf 7896297764------------3998307526989999999985135777787660351787720036644345101234 Q gi|254780435|r 36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103 (336) Q Consensus 36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t 103 (336) ..-|+++++. +.|.++++||+||.+|+.+++..+++|+++||++|.-. ..... ....+.+| T Consensus 34 ~~~g~~~~~~~G~~d~~~~~~~t~~t~f~iaSiSK~~ta~~i~~lve~G~l~ldd~v~~y--lP~~~-----~~~~~~IT 106 (359) T 1zkj_A 34 LKDGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASRH--APWLK-----GSAFDSIT 106 (359) T ss_dssp EETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGG--CGGGT-----TSGGGSSB T ss_pred EECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC-----CCCCCCEE T ss_conf 999999998562021566998999998963237999999999999976997743322234--77654-----44456520 Q ss_pred HHHHHHH---------------------HHHH-----------H-HHHHHHHHHHHHC-CCHHHHHHHHHH-HHHHCCCC Q ss_conf 6777676---------------------7774-----------2-3589999976401-117899999999-99870983 Q gi|254780435|r 104 LDNALKL---------------------LIVK-----------S-ANDIAVAIAESLC-KTEKKFVQHMNN-TSKNLGLS 148 (336) Q Consensus 104 v~dll~~---------------------~li~-----------S-~Ndaa~aLAe~i~-Gs~~~Fv~~MN~-~a~~lG~~ 148 (336) +++||.- .+.. . +|-.-..|++-+. -+-+.|-+.|++ -.+-|||+ T Consensus 107 i~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~lLg~iie~~tg~~~~~~l~~~i~~Plgm~ 186 (359) T 1zkj_A 107 MGELATYSAGGLPLQFPEEVDSSEKMRAYYRQWAPVYSPGSHRQYSNPSIGLFGHLAASSLKQPFAPLMEQTLLPGLGMH 186 (359) T ss_dssp HHHHHTTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHTTCS T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC T ss_conf 56554232499865676556768999999963887679894333066588999999998609988999999975425996 Q ss_pred CCEEECCCCCC------------------------CCCCCCCHHHHHHHHHHHHH Q ss_conf 53441235764------------------------62222569999999898763 Q gi|254780435|r 149 ATHFMNAHGVV------------------------QHGHYTTARDMAILSWRIKT 179 (336) Q Consensus 149 ~T~f~n~~Gl~------------------------~~~~~tTa~Dla~l~~~~~~ 179 (336) +|.|..+.-.. ..+-++|++||++..+.++. T Consensus 187 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~ 241 (359) T 1zkj_A 187 HTYVNVPKQAMASYAYGYSKEDKPIRVNPGMLADEAYGIKTSSADLLRFVKANIG 241 (359) T ss_dssp SCBSSCCGGGGGGBCCEECTTCCEECCCCCTTHHHHHCCEECHHHHHHHHHHTTT T ss_pred CCCCCCCHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 7576898366055010223679714526876677777601789999999999736 No 42 >2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ... Probab=99.06 E-value=2.2e-08 Score=69.29 Aligned_cols=135 Identities=19% Similarity=0.061 Sum_probs=81.4 Q ss_pred CCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH Q ss_conf 896297764------------39983075269899999999851357777876603517877200366443451012346 Q gi|254780435|r 37 NTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 (336) Q Consensus 37 ~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv 104 (336) ..|++++.. +.|..+++||+||.+|+.+++..+++|+++||++|. +..... .....+.+|+ T Consensus 31 ~~g~~~~~~~G~~~~~~~~~~t~~T~f~iaS~tK~~ta~~i~~lve~G~l~ld~pv~--~ylp~~-----~~~~~~~ITl 103 (358) T 2ffy_A 31 YQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTT--KYWPEL-----TAKQWNGITL 103 (358) T ss_dssp ETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHCTTC-----CSGGGTTCBH T ss_pred ECCEEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHCCCC-----CCCCCCCCHH T ss_conf 999999983864036669889999979632268999999999999769999878645--548543-----3343332329 Q ss_pred HHHHH----------------------HHHHHH-----------HHHHHHHHHHH---HCCCHHHHHHHHHHH-HHHCCC Q ss_conf 77767----------------------677742-----------35899999764---011178999999999-987098 Q gi|254780435|r 105 DNALK----------------------LLIVKS-----------ANDIAVAIAES---LCKTEKKFVQHMNNT-SKNLGL 147 (336) Q Consensus 105 ~dll~----------------------~~li~S-----------~Ndaa~aLAe~---i~Gs~~~Fv~~MN~~-a~~lG~ 147 (336) ++||. .+.-.. +|-.-..|++- +.| ..|-+.+.++ .+-||| T Consensus 104 r~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~lLg~iie~vtg--~~~~~~~~e~i~~PLgm 181 (358) T 2ffy_A 104 LHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSG--LSFEQAMQTRVFQPLKL 181 (358) T ss_dssp HHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHTGGGT--SCHHHHHHHHTTTTTTC T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCC T ss_conf 8873678799855565310006999998850887679993467550278898877763248--96777689986354698 Q ss_pred CCCEEECCCCC-----------------------CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 35344123576-----------------------4622225699999998987631 Q gi|254780435|r 148 SATHFMNAHGV-----------------------VQHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 148 ~~T~f~n~~Gl-----------------------~~~~~~tTa~Dla~l~~~~~~~ 180 (336) ++|.|.-+.-. +..+-++|++||++..+.++.. T Consensus 182 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~D~ak~~~~~l~~ 237 (358) T 2ffy_A 182 NHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKP 237 (358) T ss_dssp TTCBSSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCG T ss_pred CCCCCCCCHHHHCCEEEEEECCCCEECCCCCCCCCCCCEECCHHHHHHHHHHHHCC T ss_conf 65676798355056244321697031146534567774115899999999998489 No 43 >2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* Probab=99.04 E-value=3.3e-08 Score=68.18 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=83.7 Q ss_pred CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH Q ss_conf 7896297764------------3998307526989999999985135777787660351787720036644345101234 Q gi|254780435|r 36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103 (336) Q Consensus 36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t 103 (336) ...|++++.. +.|.++.+||+||.+|+++++..+++|+++||++|.- ....... ...+.+| T Consensus 33 ~~~g~~~~~~~G~~~~~~~~p~t~dT~f~iaSvTK~~ta~~i~~lve~G~l~lddpv~~--ylp~~~~-----~~~~~iT 105 (371) T 2wzx_A 33 SLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQ--HWPALQG-----SRFDGIS 105 (371) T ss_dssp EETTEEEEEEEEBSCTTTCCBCCTTCEEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--GCGGGTT-----SGGGGCB T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCC-----CCCCCCH T ss_conf 99999999848750056698899999796304689999999999998699777786223--5873101-----4656204 Q ss_pred HHHHHHHH-----------------------H------------HHHHHHHHHHHH---HHHCCCHHHHHHHHHHH-HHH Q ss_conf 67776767-----------------------7------------742358999997---64011178999999999-987 Q gi|254780435|r 104 LDNALKLL-----------------------I------------VKSANDIAVAIA---ESLCKTEKKFVQHMNNT-SKN 144 (336) Q Consensus 104 v~dll~~~-----------------------l------------i~S~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~ 144 (336) +++||.-. . ..| |-.-..|+ |.+.| +.|-+.|+++ .+- T Consensus 106 i~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ys-n~~y~llg~iie~vtg--~~~~~~~~~~i~~P 182 (371) T 2wzx_A 106 LLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYS-NPSIGLFGYLAARSLG--QPFERLMEQQVFPA 182 (371) T ss_dssp HHHHHTTCSSCCCSSCCTTCCSCHHHHHHHHHHCCCSSCTTSEECCC-HHHHHHHHHHHHHHHT--SCHHHHHHHTHHHH T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEC-CCHHHHHHHHHHHHCC--CCHHHHHHHHHCCC T ss_conf 99885225799765566413456999999997478767999534434-6062898899998729--97777548875055 Q ss_pred CCCCCCEEECCCCCC------------------------CCCCCCCHHHHHHHHHHHHHH Q ss_conf 098353441235764------------------------622225699999998987631 Q gi|254780435|r 145 LGLSATHFMNAHGVV------------------------QHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 145 lG~~~T~f~n~~Gl~------------------------~~~~~tTa~Dla~l~~~~~~~ 180 (336) |||++|.|.-+.... ..+-++|++||++..+.++.. T Consensus 183 Lgm~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~~ 242 (371) T 2wzx_A 183 LGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHP 242 (371) T ss_dssp TTCSSEESSCCGGGGGGBCCCBCGGGCBCCCCCCTTHHHHHCCEEEHHHHHHHHHHHHCG T ss_pred CCCCCCCCCCCHHHHCCCEEEECCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHCC T ss_conf 688665168974663252123304898434068766667560011799999999998389 No 44 >3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Probab=99.04 E-value=3.2e-09 Score=74.38 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=88.4 Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE-----ECHHHHHCCC-----CCCCCCC Q ss_conf 56899997896297764399830752698999999998513577778766035-----1787720036-----6443451 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-----ISKNASEYPP-----SNSTFKK 98 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~-----vs~~~~~~~~-----s~~~l~~ 98 (336) ..+.|+ ...|.+...-+.|.++++||+||.+|+.+++..+++|+++||+++. +-.-.....| .....+| T Consensus 15 ~~~~v~-~~~~~~~~~gd~dt~f~iaS~tK~~ta~~i~~lve~G~l~Ld~pv~~~~iTlr~LLthtsGl~~~~~~~~~~P 93 (280) T 3i7j_A 15 AAAAVI-GPAGVLATHGDTARVFALASVTKPLVARAAQVAVEEGVVNLDTPAGPPGSTVRHLLAHTSGLAMHSDQALARP 93 (280) T ss_dssp EEEEEE-ETTEEEEEESCTTSCEECGGGHHHHHHHHHHHHHHHTSSCTTSBCSSTTCBHHHHHTTCSCBCSSSSCBCSCT T ss_pred CCEEEE-CCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC T ss_conf 644898-3997881138998889876059999999999999869988999788789879999548688875667621498 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 0123467776767774235899999764011178999999999-987098353441235764622225699999998987 Q gi|254780435|r 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 (336) Q Consensus 99 g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~ 177 (336) |+++.-.++=+.++ . .+.|.+.| +.|-+.|+++ .+-|||++|.|.........+-++|++|++++++.+ T Consensus 94 Gt~~~Ysn~~~~lL-------g-~ile~vtG--~~~~~~~~e~I~~PLGm~~t~~~~~p~~~~~G~~st~~D~~~~~~~l 163 (280) T 3i7j_A 94 GTRRMYSNYGFTVL-------A-ESVQRESG--IEFGRYLTEAVCEPLGMVTTRLDGGPAAAGFGATSTVADLAVFAGDL 163 (280) T ss_dssp TTCCCCCHHHHHHH-------H-HHHHHHHT--SCHHHHHHHHTHHHHTCTTCEECSGGGGTTTCEEECHHHHHHHHHHH T ss_pred CCEEEECCHHHHHH-------H-HHHHHHCC--CCHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHH T ss_conf 96457775769999-------9-98874338--62788999999975289762415883314677433277999999998 Q ss_pred HH Q ss_conf 63 Q gi|254780435|r 178 KT 179 (336) Q Consensus 178 ~~ 179 (336) +. T Consensus 164 l~ 165 (280) T 3i7j_A 164 LR 165 (280) T ss_dssp HS T ss_pred HC T ss_conf 48 No 45 >1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ... Probab=99.02 E-value=3.7e-08 Score=67.90 Aligned_cols=185 Identities=12% Similarity=-0.009 Sum_probs=112.7 Q ss_pred CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHHH Q ss_conf 568999978962977643---99830752698999999998513577778766035178772003664434-51012346 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTL 104 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~tv 104 (336) -+.+++|.+||+++. .| +.++++|+|+-|++|+..+|| +|.+..++.+... +++.... .....+++ T Consensus 19 G~~v~~d~~tg~~~~-~~~~ra~~~~~PGStfKp~~~~aaLe---~G~i~~~~~~~~~------~g~~~~~~~~~g~~tl 88 (246) T 1k55_A 19 GVFVLCKSSSKSCAT-NDLARASKEYLPASTFKIPNAIIGLE---TGVIKNEHQVFKW------DGKPRAMKQWERDLTL 88 (246) T ss_dssp EEEEEEESSTTSEEE-SCHHHHTCCBCCGGGGHHHHHHHHHH---TTSSCSTTCEECC------CSCCCSSGGGSSCEEH T ss_pred EEEEEEECCCCCEEE-ECHHHHHCCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCC------CCCCCCCCCCCCCCCH T ss_conf 589999899996886-37667626879974389999999998---0899974455368------9956676777999799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHH- Q ss_conf 777676777423589999976401117899999999998709835344123576--46222256999999989876312- Q gi|254780435|r 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDF- 181 (336) Q Consensus 105 ~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl--~~~~~~tTa~Dla~l~~~~~~~~- 181 (336) ++ .|..|.|.+..-|++.+| .+.+.+.++++|+.+......... ...+-..|+..|+.....+...- T Consensus 89 ~~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~iangg~ 158 (246) T 1k55_A 89 RG----AIQVSAVPVFQQIAREVG------EVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKL 158 (246) T ss_dssp HH----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCSCTTTTTTTSSCCBCHHHHHHHHHHHHTTCS T ss_pred HH----HHHHCCCHHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 99----999748299999999839------89999999983999887888765344469865569999999999972998 Q ss_pred ---HHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHH------HEEEEEEEECCEEEEEEEEC Q ss_conf ---33110123020001744786014565668971153321241120------00234564288689999837 Q gi|254780435|r 182 ---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG------FNIVASAIQGDQSLIAVILG 245 (336) Q Consensus 182 ---p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG------~~lv~~a~~~g~~li~Vvlg 245 (336) |+....... .-+.- .......++|||+..... .-||+.+..++.+++.+|+- T Consensus 159 ~~sp~~~~~~~~-----~m~~~-------~~~g~~vagKTGTa~~g~~~~~~~aWFvGf~p~~~p~~~~av~i 219 (246) T 1k55_A 159 SASKENQLIVKE-----ALVTE-------AAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNM 219 (246) T ss_dssp SSCHHHHHHHHH-----HTEEE-------EETTEEEEEEEEECCCCCSSSCEEEEEEEEEEETTEEEEEEEEE T ss_pred CCCHHHHHHHHH-----HHHHH-------HHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 778899999999-----99987-------76642214445122205789985389999998799859999999 No 46 >3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* Probab=99.02 E-value=4.2e-08 Score=67.54 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=110.3 Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC-CCHHHHHH Q ss_conf 56899997896297764--3998307526989999999985135777787660351787720036644345-10123467 Q gi|254780435|r 29 PYYTLLDTNTGHVIAEN--YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-KGSTMTLD 105 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~k--n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~-~g~~~tv~ 105 (336) -+.+++|..+|+++... .+.++++|+|+-|+++++.+|| +|.++.++.+.-+. ...... ....++++ T Consensus 22 G~~v~~d~~~~~~~~~~~~ra~~~~~PGSTfK~~~~~aaLe---~G~~~~~~~~~~~g-------~~~~~~~~~g~~~l~ 91 (244) T 3g4p_A 22 GVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLE---NHKATTNEIFKWDG-------KKRTYPMWEKDMTLG 91 (244) T ss_dssp EEEEEEETTEEEEEESCGGGGGCCBCCGGGHHHHHHHHHHH---TTSCCSSCCBCCCS-------CCCSSGGGSSCBCHH T ss_pred EEEEEEECCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCC-------CCCCCCCCCCCCCHH T ss_conf 38999978988664354001137879964799999999998---69999742234789-------650578878886999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 77676777423589999976401117899999999998709835344123576--4622225699999998987631233 Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQ 183 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl--~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336) + .|..|.|.+..-|+..+| .+.+.+.++.+|+.+......... -..+...|+.+|+.+...+..+-.. T Consensus 92 ~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~iTp~q~a~~~~~lan~g~~ 161 (244) T 3g4p_A 92 E----AMALSAVPVYQELARRTG------LELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLP 161 (244) T ss_dssp H----HHHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCTTCCCTTCTTTHHHHSSCCBCHHHHHHHHHHHHTTCSS T ss_pred H----HHHHCCHHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCC T ss_conf 9----999638599999998708------387899999789999889865556110787018699999999999709805 Q ss_pred HHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH---EEEEEEEE-CCEEEEEEEE Q ss_conf 1101230200017447860145656689711533212411200---02345642-8868999983 Q gi|254780435|r 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF---NIVASAIQ-GDQSLIAVIL 244 (336) Q Consensus 184 ~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~---~lv~~a~~-~g~~li~Vvl 244 (336) +...+. +.....-+... ..-+..++|||+....+. -|++.+.. +++.++.|++ T Consensus 162 ~~~~~~-~~v~~~m~~~~-------~~g~~~aGKTGT~~~~~~~~~WFvG~~~~~~~~~~~~~v~ 218 (244) T 3g4p_A 162 FKLETQ-EEVKKMLLIKE-------VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLN 218 (244) T ss_dssp SCHHHH-HHHHHTTEEEE-------ETTEEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEE T ss_pred CCHHHH-HHHHHHHHHHH-------HHCEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEE T ss_conf 585589-99999999755-------4322237858711268998789999768698988999999 No 47 >2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi} Probab=99.01 E-value=6.7e-09 Score=72.39 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=81.3 Q ss_pred CCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHH Q ss_conf 7896297764-------------399830752698999999998513577778766035178772003664434510123 Q gi|254780435|r 36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102 (336) Q Consensus 36 ~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~ 102 (336) ...|+++|++ +.|..+++||+||.+|+.+++..+++|+++||++|.-. .... ....++.+ T Consensus 27 ~~~g~~v~~~~~G~ad~~~~~p~~~dT~f~i~SvSK~fTa~~i~~Lve~G~l~lddpv~~y--lP~~-----~~~~~~~i 99 (447) T 2qmi_A 27 IKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKF--VNIK-----LRPFGEPV 99 (447) T ss_dssp EETTEEEEEEEEEEEETTTTEECCSSCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGT--SSSC-----CCGGGCCC T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCHHHH--CCCC-----CCCCCCCC T ss_conf 9999999998577504677998999997967008999999999999986999987808896--8522-----37888985 Q ss_pred HHHHHHHHH-----------------------------------------HH-------HHHHHHHHHHHH---HH-CCC Q ss_conf 467776767-----------------------------------------77-------423589999976---40-111 Q gi|254780435|r 103 TLDNALKLL-----------------------------------------IV-------KSANDIAVAIAE---SL-CKT 130 (336) Q Consensus 103 tv~dll~~~-----------------------------------------li-------~S~Ndaa~aLAe---~i-~Gs 130 (336) |+++||.-. ++ .-+|..-..|++ .+ |.+ T Consensus 100 Ti~~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGt~~~Ysn~~y~lLg~iie~vtg~~ 179 (447) T 2qmi_A 100 TVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVS 179 (447) T ss_dssp BHHHHHTTCSSCCBCSHHHHHHHHHTTCSCCCCCCSHHHHHHHGGGGGGGCCSCTTSCCCCCHHHHHHHHHHHHHHHSSC T ss_pred CHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHCCC T ss_conf 89997017679987665212231010222235556726789999975422356888611234557999999999984999 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCC---------------------------CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 7899999999998709835344123576---------------------------4622225699999998987631 Q gi|254780435|r 131 EKKFVQHMNNTSKNLGLSATHFMNAHGV---------------------------VQHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 131 ~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl---------------------------~~~~~~tTa~Dla~l~~~~~~~ 180 (336) .+.|++ ..-.+-|||++|.|..+... +..+-+||++||++.++.++.+ T Consensus 180 ~~~~~~--~~I~~PLgm~~T~~~~~~~~~~~~~a~gy~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l~~ 254 (447) T 2qmi_A 180 YEEYIK--KKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKYLKMYIER 254 (447) T ss_dssp HHHHHH--HHTTTTTTCTTCBSSHHHHTTCSCBCCEEEECTTSCEEEECCCTTCCTTTCCEECHHHHHHHHHHHHTT T ss_pred HHHHHH--HHHHHHCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 999999--976511288663546873440454100021176565366677666665542007899999999999748 No 48 >3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A* Probab=99.00 E-value=5.6e-08 Score=66.77 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=111.6 Q ss_pred CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 568999978962977643---99830752698999999998513577778766035178772003664434510123467 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~ 105 (336) -+.+++|..+|+++..-| +.++++|+|+-|++|++.+|| +|.++.++.+..... ...+-.....++++ T Consensus 17 g~~v~~d~~~~~~~~~~n~~~~~~~y~PGSTfK~~~~~aaLe---~g~i~~~~~~~~~~~------~~~~~~~~~~~tl~ 87 (251) T 3isg_A 17 GCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFD---AEIIDQKTIFKWDKT------PKGMEIWNSNHTPK 87 (251) T ss_dssp EEEEEEETTTCCEEEEECHHHHTCCBCCGGGHHHHHHHHHHH---TTSCCTTCCBCCCSS------CCSSGGGSSCBCHH T ss_pred CEEEEEECCCCCEECCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEEECCC------CCCCCCCCCCCCHH T ss_conf 249999789898500308677467779953599999999998---599889955773265------66766779982989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC--------CCCCCCCHHHHHHHHHHH Q ss_conf 776767774235899999764011178999999999987098353441235764--------622225699999998987 Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------QHGHYTTARDMAILSWRI 177 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~--------~~~~~tTa~Dla~l~~~~ 177 (336) +. |..|.|-...-|+..+| .+.|.+.++.+|+.+-......+.. ..+-..|+..|+.+...+ T Consensus 88 ~A----l~~S~N~~~~~la~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~i 157 (251) T 3isg_A 88 TW----MQFSVVWVSQEITQKIG------LNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKI 157 (251) T ss_dssp HH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTCTTCCCCCC--CCCHHHHTTSSSSCCBCHHHHHHHHHHH T ss_pred HH----HHHCCHHHHHHHHHHCC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHHHHHH T ss_conf 99----98715799999987638------313789999769999888886422235566311476014599999999999 Q ss_pred HHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH-----EEEEEEEE-CCEEEEEEEE Q ss_conf 6312331101230200017447860145656689711533212411200-----02345642-8868999983 Q gi|254780435|r 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF-----NIVASAIQ-GDQSLIAVIL 244 (336) Q Consensus 178 ~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~-----~lv~~a~~-~g~~li~Vvl 244 (336) ..+-..+....... . .+........ .-+..++|||++...+. -||+.+.. +++.++.|++ T Consensus 158 an~~~~~~~~~~~~-i-~~~m~~~~~~-----~g~~vaGKTGTa~~~~~~~~~~WFvGy~p~~~~~~~~~~v~ 223 (251) T 3isg_A 158 INHNLPVKNSAIEN-T-IENMYLQDLD-----NSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSA 223 (251) T ss_dssp HTTCSSSCHHHHHH-H-HHHTEEEECT-----TSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEE T ss_pred HCCCCCCCHHHHHH-H-HHHHHHHEEC-----CCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEE T ss_conf 83993138589999-9-9997562332-----66421366377547899985399999987489988999999 No 49 >1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A* Probab=98.98 E-value=6.8e-08 Score=66.25 Aligned_cols=189 Identities=10% Similarity=-0.020 Sum_probs=113.4 Q ss_pred CEEEEEECCCCEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 568999978962977643---99830752698999999998513577778766035178772003664434510123467 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY---PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn---~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~ 105 (336) -+.++||.++|+++. .| +.++++|+|+-|+.|+..+|| +|.+..++.+...... ...+-.....++++ T Consensus 31 G~~v~~d~~~g~~~~-~n~~~~~~~y~PGStfK~~~~~aaLe---~G~i~~~~~~~~~~~~-----~~~~~~~~g~~~l~ 101 (255) T 1xkz_A 31 GSFVMYSMKKDKYYI-YNEKESRKRYSPNSTYKIYLAMFGLD---RHIINDENSRMSWNHK-----HYPFDAWNKEQDLN 101 (255) T ss_dssp EEEEEEETTTTEEEE-ESHHHHTSEECCGGGGHHHHHHHHHH---TTSSCSSCCCBCCCCC-----CCSSGGGSSCBCHH T ss_pred EEEEEEECCCCCEEC-CCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCEECCCCC-----CCCCCCCCCCCCHH T ss_conf 269999899997652-18899658789954899999999998---6998887512259988-----70578778998999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 7767677742358999997640111789999999999870983534412357-646222256999999989876312331 Q gi|254780435|r 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-VVQHGHYTTARDMAILSWRIKTDFPQY 184 (336) Q Consensus 106 dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~G-l~~~~~~tTa~Dla~l~~~~~~~~p~~ 184 (336) + .|..|.|-...-|+..+| .+.|.+.++.+|+.+.....+.+ +-..+-..|+-.|+.+...+..+-..+ T Consensus 102 ~----Al~~S~N~~~~~l~~~lG------~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~vTPlq~a~~~~~ian~g~~~ 171 (255) T 1xkz_A 102 T----AMQNSVNWYFERISDQIP------KNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHF 171 (255) T ss_dssp H----HHHTTCHHHHHHHHTTSC------HHHHHHHHHHHTCTTCCCTTSSSTTTTSSCCEEHHHHHHHHHHHHHCC-CS T ss_pred H----HHHHCCCHHHHHHHHHHC------CHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCC T ss_conf 9----999767499999887617------226899999808898874557544437975354999999999997099666 Q ss_pred HCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH----EEEEEEEECCEEEEEEEE Q ss_conf 101230200017447860145656689711533212411200----023456428868999983 Q gi|254780435|r 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF----NIVASAIQGDQSLIAVIL 244 (336) Q Consensus 185 ~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~----~lv~~a~~~g~~li~Vvl 244 (336) .. .....-...+.. ....-+-.++|||+....+. -||+.+..++.+++++|+ T Consensus 172 s~----~~~~~~~~~m~~----~~~~G~~vagKTGTa~~~~~~~~~WFvGy~p~~~p~~~vav~ 227 (255) T 1xkz_A 172 SK----KAKNQLSSSLLI----KKNEKYELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATH 227 (255) T ss_dssp CH----HHHHHHHHHHEE----EECSSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE T ss_pred CH----HHHHHHHHHHHH----HHHCCCHHHCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 88----899999999998----875585000201221418996518999999879985999999 No 50 >2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A* Probab=98.95 E-value=3.2e-07 Score=62.17 Aligned_cols=132 Identities=15% Similarity=0.092 Sum_probs=79.9 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC--HHHH-----------HCCC-----CCCCCCCCHHHHHHHH Q ss_conf 39983075269899999999851357777876603517--8772-----------0036-----6443451012346777 Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS--KNAS-----------EYPP-----SNSTFKKGSTMTLDNA 107 (336) Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs--~~~~-----------~~~~-----s~~~l~~g~~~tv~dl 107 (336) ..|..+++||+||.+|+.+++..+++|+++||++|.-. +-.. ...| ..........++.+++ T Consensus 51 t~dT~f~i~SvtK~~ta~~v~~Lve~G~l~Ld~pv~~ylp~~~~~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~ 130 (363) T 2drw_A 51 TGDHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEI 130 (363) T ss_dssp CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHH T ss_pred CCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 99997963037899999999999987998888870215876556788779996738569986544422244344689999 Q ss_pred HHHHHHH----------H-HHHHHHHHH---HHHCC-CHHHHHHHHHHHHHHCCCCCCEEECCCCCC------------- Q ss_conf 6767774----------2-358999997---64011-178999999999987098353441235764------------- Q gi|254780435|r 108 LKLLIVK----------S-ANDIAVAIA---ESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------- 159 (336) Q Consensus 108 l~~~li~----------S-~Ndaa~aLA---e~i~G-s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------------- 159 (336) +..+.-. + +|-.-..|+ |.+.| +.+.|++ ..-.+-|||++|.|..+...+ T Consensus 131 ~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie~vtg~~~~~~~~--e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~ 208 (363) T 2drw_A 131 VDFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLR--SRIFAPLGMKDTWVGTHETFPIEREARGYMHAAA 208 (363) T ss_dssp HHHHHHHSCCCCTTSSCCCCSHHHHHHHHHHHHHHTSCHHHHHH--HHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBT T ss_pred HHHHHHCCCCCCCCCEEEECCCCEECCCHHHHHHCCCCHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCC T ss_conf 99885377667998413413552110105777653998999999--8754647986657678412444533310111455 Q ss_pred ---------------------------------CCCCCCCHHHHHHHHHHHHH Q ss_conf ---------------------------------62222569999999898763 Q gi|254780435|r 160 ---------------------------------QHGHYTTARDMAILSWRIKT 179 (336) Q Consensus 160 ---------------------------------~~~~~tTa~Dla~l~~~~~~ 179 (336) ..+-+|||+||+++.+.++. T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~sta~Dla~~~~~l~~ 261 (363) T 2drw_A 209 DDENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFD 261 (363) T ss_dssp TCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGGGTCEEECHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 55564323334566656633463212344566655211899999999999868 No 51 >1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A* Probab=98.93 E-value=6.1e-08 Score=66.54 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=75.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHH-------------------- Q ss_conf 399830752698999999998513577778766035178772003664434510123467-------------------- Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD-------------------- 105 (336) Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~-------------------- 105 (336) +.|.++++||+||.+|+.+++..+++|+++||++|. +..... ...+.+|++ T Consensus 53 t~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~--~ylp~~-------~~~~~iTi~~LL~HtSGl~~~~~~~~~~~ 123 (349) T 1yqs_A 53 TTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVN--TYLPGL-------LPDDRITVRQVMSHRSGLYDYTNDMFAQT 123 (349) T ss_dssp CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHSTTC-------SSCTTCBHHHHHTTCSCCCCTHHHHTSSH T ss_pred CCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCC-------CCCCCCCHHHHHHCCCCCCCCCCCCHHHH T ss_conf 999979630479999999999999879999888210--028876-------88886659998216478987655310220 Q ss_pred ---------------HHHHHHHHH----------H-HHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECC Q ss_conf ---------------776767774----------2-358999997---64011178999999999-98709835344123 Q gi|254780435|r 106 ---------------NALKLLIVK----------S-ANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNA 155 (336) Q Consensus 106 ---------------dll~~~li~----------S-~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~ 155 (336) |++....-. + +|-....|+ |.+.| +.|-+.|.++ .+-|||++|.|..+ T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtG--~~~~~~~~e~i~~PLGm~~t~~~~~ 201 (349) T 1yqs_A 124 VPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG--HSVATEYQNRIFTPLNLTDTFYVHP 201 (349) T ss_dssp HHHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTTTTCTTCBCCTT T ss_pred CCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 44300002344788999999875044579995677643352310221321049--9789999998664329987788896 Q ss_pred C---------CC----------------------CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5---------76----------------------4622225699999998987631 Q gi|254780435|r 156 H---------GV----------------------VQHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 156 ~---------Gl----------------------~~~~~~tTa~Dla~l~~~~~~~ 180 (336) . |. ...+-++|++||++..+.++.. T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dl~~~~~~l~~g 257 (349) T 1yqs_A 202 DTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSG 257 (349) T ss_dssp CCCCCSSBCCCEECCSSTTCCCEECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTT T ss_pred HHHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 02123212124223556787231353346543466764106899999999998669 No 52 >1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1 Probab=98.90 E-value=1.1e-07 Score=65.00 Aligned_cols=220 Identities=13% Similarity=0.095 Sum_probs=107.7 Q ss_pred CEEEEEECCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCC Q ss_conf 56899997896297764-------------39983075269899999999851357777876603517877200366443 Q gi|254780435|r 29 PYYTLLDTNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~ 95 (336) +.+.|.=...|+++|++ +.+.++++||+||.+|+.+++..+++|++ ||++|.- ...... T Consensus 23 PG~avaVv~~g~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvSK~fTa~~vl~Lve~G~l-Lddpv~~--ylP~~~----- 94 (520) T 1ei5_A 23 PGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLDAVGEPEL-LDDALEA--YLDKFE----- 94 (520) T ss_dssp SEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHHHTCSGGG-GHHHHHH--HTTTCC----- T ss_pred CCEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC-CCCHHHH--HCCCCC----- T ss_conf 81899999999999998277750677998999986971708999999999999974994-5681788--684656----- Q ss_pred CCCCHHHHHHHHHHH------------------------------HHH-----------HH-HHHHHHHHH---HHHCC- Q ss_conf 451012346777676------------------------------777-----------42-358999997---64011- Q gi|254780435|r 96 FKKGSTMTLDNALKL------------------------------LIV-----------KS-ANDIAVAIA---ESLCK- 129 (336) Q Consensus 96 l~~g~~~tv~dll~~------------------------------~li-----------~S-~Ndaa~aLA---e~i~G- 129 (336) ++.+|+++||.- +-- .+ +|-.-..|+ |.+.| T Consensus 95 ---~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~YSN~gy~lLg~iiE~vtG~ 171 (520) T 1ei5_A 95 ---DERPAVRDLCNNQSGLRDYWALSVLCGADPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFRILADLIEAHTGR 171 (520) T ss_dssp ---SCCCCHHHHHTTCSCCCCHHHHHHHTTCCTTCCBCHHHHHHHHHTCCCCSSCTTSSCCCCHHHHHHHHHHHHHHHTS T ss_pred ---CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC T ss_conf ---68886899606877897543443223556201245355999986257776898966764751676766768877199 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCC-------------------------CCCCCCCHHHHHHHHHHHHHHHH-- Q ss_conf 178999999999987098353441235764-------------------------62222569999999898763123-- Q gi|254780435|r 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV-------------------------QHGHYTTARDMAILSWRIKTDFP-- 182 (336) Q Consensus 130 s~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~-------------------------~~~~~tTa~Dla~l~~~~~~~~p-- 182 (336) +-+.|++. .-.+-|||++|.|..+.... +.+-++|+.||++..+.+..... T Consensus 172 s~~~~l~e--~I~~PLGM~~t~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gaggl~sT~~Dl~~~~~~l~~~~~~~ 249 (520) T 1ei5_A 172 TLVDILSE--RIFAPAGMKRAELISDTALFDECTGYEGDTVRGFLPATNRIQWMGDAGICASLNDMIAWEQFIDATRDDE 249 (520) T ss_dssp CHHHHHHH--HTHHHHTCTTCEECCBGGGCCSSCCEEEETTTEEEECCCCBBCCSSSCEEECHHHHHHHHHHHHHTTTCT T ss_pred CHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCC T ss_conf 88895077--6415458855505887223344431004456774456775544577642407999999999976799998 Q ss_pred --HHHCCCCEEECCCCCEEEEECCCCCCCCCCEE-EEEEECCHHHHH-EEEEEEEECCEEEEEEEECCCCHHHHHHHHHH Q ss_conf --31101230200017447860145656689711-533212411200-02345642886899998378986678999999 Q gi|254780435|r 183 --QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGF-NIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 (336) Q Consensus 183 --~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~-G~KTG~t~~AG~-~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~~~ 258 (336) .+.++.....+..+...-+-.-..+..+.|.. -.++|.+ .|| |.+...- ++++.+|||-..+. .-..-+.+ T Consensus 250 ~~~~~~~~~~~~~~~~~~~~YG~G~~~~~~~g~~~~~H~G~~--~G~~s~~~~~P--e~~l~ivvl~N~~~-~~~~~~~~ 324 (520) T 1ei5_A 250 SGLYRRLSGPQTFKDGVAAPYGFGLNLHETGGKRLTGHGGAL--RGWRCQRWHCA--DERLSTIAMFNFEG-GASEVAFK 324 (520) T ss_dssp TSHHHHHSSCCBCTTSCBCSEETTEEEEEETTEEEEEEEEEE--TTEEEEEEEEG--GGTEEEEEEESBSS-CHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCC--CCCEEEEEEEE--CCCEEEEEEEECCC-CHHHHHHH T ss_conf 899986437721368997863635899814990799936837--88269999998--89989999993998-89999999 Q ss_pred HHHHHHHH Q ss_conf 99999851 Q gi|254780435|r 259 LLSMGFYN 266 (336) Q Consensus 259 Ll~~~f~~ 266 (336) +++..+.. T Consensus 325 i~~~~lg~ 332 (520) T 1ei5_A 325 LMNIALGV 332 (520) T ss_dssp HHHHHHTC T ss_pred HHHHHCCC T ss_conf 99997299 No 53 >1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A* Probab=98.85 E-value=3.1e-08 Score=68.33 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=40.8 Q ss_pred CCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 7896297764-------------399830752698999999998513577778766035 Q gi|254780435|r 36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 (336) Q Consensus 36 ~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~ 81 (336) ...|+++|++ +.|.++++||+||.+|+.+++..+++|+++||++|. T Consensus 43 ~~~G~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvtK~~ta~~i~~Lve~G~l~ldd~v~ 101 (392) T 1ci9_A 43 ARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELALDAPVT 101 (392) T ss_dssp EETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSSCTTSBGG T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999999984765144559989999879713179999999999999779866777411 No 54 >3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis} Probab=98.81 E-value=3e-07 Score=62.30 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=73.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCC-CCCHHHH--------------------- Q ss_conf 399830752698999999998513577778766035178772003664434-5101234--------------------- Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMT--------------------- 103 (336) Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l-~~g~~~t--------------------- 103 (336) +.|.++++||+||.+|+.+++..+++|+++||++|.- ..... ..... ...+.+| T Consensus 53 ~~~t~f~i~SvsK~~Ta~~i~~lv~~G~l~ld~~v~~--ylP~~--~~~~~~~~~~~ITi~~LL~htSGl~~~~~~~~~~ 128 (351) T 3ozh_A 53 RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLKK--YAPKG--VNVPSYSAKQPIRLLHLASHTSGLPREQPGGPQK 128 (351) T ss_dssp CTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTCBGGG--GSCTT--CCCCCSSTTCCCBHHHHHTTCSCCCSSCSSCCSS T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--CCCHH--HCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCHHH T ss_conf 9999686300899999999999998699998887201--38222--0367767678627899565747998766534022 Q ss_pred --------HHHHHHHHHH----------HHHHHHHH-HHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECCC---- Q ss_conf --------6777676777----------42358999-997---64011178999999999-987098353441235---- Q gi|254780435|r 104 --------LDNALKLLIV----------KSANDIAV-AIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAH---- 156 (336) Q Consensus 104 --------v~dll~~~li----------~S~Ndaa~-aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~~---- 156 (336) .++++..+.. .+=++..+ .|+ |.+.| +.|-+.|+++ .+-|||++|.|.-+. T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~pgt~~~Ysn~~~~lLg~iie~vtg--~~~~~~~~~~I~~PLgm~~t~~~~~~~~~~ 206 (351) T 3ozh_A 129 RPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLLADALSRAAG--KPYAHLLRDKITAPLGMKNTTLTPTAEQCK 206 (351) T ss_dssp CCTTCCSCHHHHHHHHTTCCCCSCTTSEEECCHHHHHHHHHHHHHHHT--SCHHHHHHHHTHHHHTCTTCBSSCCHHHHT T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCCHHHHC T ss_conf 001134468999999985887689885464334378999999999879--856563686526667996777469846732 Q ss_pred ----CC------------CCCCCCCCHHHHHHHHHHHHH Q ss_conf ----76------------462222569999999898763 Q gi|254780435|r 157 ----GV------------VQHGHYTTARDMAILSWRIKT 179 (336) Q Consensus 157 ----Gl------------~~~~~~tTa~Dla~l~~~~~~ 179 (336) |. +..+-++|++||++..+.++. T Consensus 207 ~~a~~~~~~~~~~~~~~~~agg~~st~~Dla~f~~~~l~ 245 (351) T 3ozh_A 207 RLMIGVGSSRCGNTVAAAGSGGIYSTPEDMQHWMQQFLA 245 (351) T ss_dssp TBCCCTTCCCCCCCGGGTTTTCCEECHHHHHHHHHTTSC T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 700045767778755556865542789999999999956 No 55 >3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A Probab=98.73 E-value=1e-07 Score=65.19 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=87.6 Q ss_pred CCCEEEE-EECCCCEEEEEE------------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-HHH Q ss_conf 7856899-997896297764------------------39983075269899999999851357777876603517-877 Q gi|254780435|r 27 KLPYYTL-LDTNTGHVIAEN------------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNA 86 (336) Q Consensus 27 ~a~~~i~-~d~~tG~iL~~k------------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs-~~~ 86 (336) ..+.+++ +-...|+|+|++ ..|..+.+||+||.+|+.+++..+++|+++||++|.-. ++- T Consensus 48 ~iPG~~v~v~~~~G~vvy~~~~G~~~~~~~~~~~~~Pvt~dT~f~iaSiTK~~Ta~ai~~Lve~G~L~LddpV~~ylPef 127 (432) T 3hlc_A 48 QIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLPDL 127 (432) T ss_dssp SCSEEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHHHHHTTSCCTTSBTTTTCHHH T ss_pred CCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHH T ss_conf 99966999994699799987462144456654468999999979610237999999999999869988887031228044 Q ss_pred HHC-------CCCCCCC-CCCHHHHHHHHHHHH------------------------------------HH-------HH Q ss_conf 200-------3664434-510123467776767------------------------------------77-------42 Q gi|254780435|r 87 SEY-------PPSNSTF-KKGSTMTLDNALKLL------------------------------------IV-------KS 115 (336) Q Consensus 87 ~~~-------~~s~~~l-~~g~~~tv~dll~~~------------------------------------li-------~S 115 (336) ... +.....+ ...+.+|+++||.-. +. .+ T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~ITlr~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~pg~~~~y 207 (432) T 3hlc_A 128 SAMPVLEGFDDAGNARLRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRLAPPAVNDPGAEWIY 207 (432) T ss_dssp HTCCEEEEECTTCCEEEECCSSCCBHHHHHTTCSSCCCGGGCHHHHHHHHTTCCCC--------CSCSCBSSCTTSCCCC T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 05752236655555446555689869997189889976655714666543044342068899987508665699842774 Q ss_pred HHHHHHHHH---HHH-CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC-------------------------------- Q ss_conf 358999997---640-11178999999999987098353441235764-------------------------------- Q gi|254780435|r 116 ANDIAVAIA---ESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-------------------------------- 159 (336) Q Consensus 116 ~Ndaa~aLA---e~i-~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~-------------------------------- 159 (336) .| .-..|+ |.+ +-+.+.|++. +-.+-|||++|.|.-+.... T Consensus 208 ~~-~~~lLg~iiE~vtG~~~~~~l~e--~I~~PLGM~~T~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 284 (432) T 3hlc_A 208 GT-NLDWAGKLVERATGLDLEQYLQE--NICAPLGITDMTFKLQQRPDMLARRADQTHRNSADGRLRYDDSVYFRADGEE 284 (432) T ss_dssp CT-HHHHHHHHHHHHHSSCHHHHHHH--HTHHHHTCCSEESCGGGCHHHHHHCCCEEEECTTTCCEEEECCGGGTCCCSS T ss_pred CC-CHHHHHHHHHHHHHCCCCCCCHH--EEECCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC T ss_conf 76-58876578876530221101032--0565678753140058303210111222221157884342354221345653 Q ss_pred ---CCCCCCCHHHHHHHHHHHHHH Q ss_conf ---622225699999998987631 Q gi|254780435|r 160 ---QHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 160 ---~~~~~tTa~Dla~l~~~~~~~ 180 (336) ..+-+|||+||+++.+.++.+ T Consensus 285 ~~g~gGl~STa~Dlakf~~~ll~~ 308 (432) T 3hlc_A 285 CFGGQGVFSSPGSYMKVLHSLLKR 308 (432) T ss_dssp CCTTTCCEECHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 356775647799999999999843 No 56 >2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens} Probab=98.71 E-value=1.5e-07 Score=64.21 Aligned_cols=136 Identities=18% Similarity=0.048 Sum_probs=82.7 Q ss_pred CCCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH Q ss_conf 7896297764------------3998307526989999999985135777787660351787720036644345101234 Q gi|254780435|r 36 TNTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103 (336) Q Consensus 36 ~~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t 103 (336) ...|+++++. +.|..+++||+||.+|+.+++..+++|+++||++|.- ...... -...+.+| T Consensus 29 ~~~g~i~~~~~G~~d~~~~~~~~~dt~f~iaSisK~~ta~~i~~Lve~g~l~Ld~~v~~--ylp~~~-----~~~~~~IT 101 (358) T 2qz6_A 29 IQNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKLKLSDPASQ--YLPALR-----GDKFDHIS 101 (358) T ss_dssp EETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--GCGGGT-----TSGGGSSB T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCC-----CCCCCCEE T ss_conf 99999999858760066698999999796154789999999999997599876670434--077442-----22457516 Q ss_pred HHHHH----------------------HHHHHH----------H-HHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCC Q ss_conf 67776----------------------767774----------2-358999997---64011178999999999-98709 Q gi|254780435|r 104 LDNAL----------------------KLLIVK----------S-ANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLG 146 (336) Q Consensus 104 v~dll----------------------~~~li~----------S-~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG 146 (336) +++|| ..+.-. + +|-.-..|+ |.+.| ..|.+.|.++ .+-|| T Consensus 102 ir~LLshtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~iiE~~tg--~~~~~~~~e~i~~PLg 179 (358) T 2qz6_A 102 LLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLAAQSLG--QPFEKLMEQTVLPKLG 179 (358) T ss_dssp HHHHHTTCSSCCCSSCC-----CHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHTTT--SCHHHHHHHTTTGGGT T ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--CCHHHHHHHHHHCCCC T ss_conf 73143554576533567677999999999973898779994446345388898899999859--6988989999745359 Q ss_pred CCCCEEECCCC--------CC----------------CCCCCCCHHHHHHHHHHHHHH Q ss_conf 83534412357--------64----------------622225699999998987631 Q gi|254780435|r 147 LSATHFMNAHG--------VV----------------QHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 147 ~~~T~f~n~~G--------l~----------------~~~~~tTa~Dla~l~~~~~~~ 180 (336) |++|.|.-+.- .. ..+-++|++||++..+.++.. T Consensus 180 m~~t~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gg~~st~~Dl~~~~~~ll~~ 237 (358) T 2qz6_A 180 LKHTFISVPETQMSLYAQGYDKAGKPVRVSPGALDAEAYGIKTSTSDLIHYVEVNMHP 237 (358) T ss_dssp CSSEESSCCGGGGGGBCCCBCTTSCBCCCCCCTTHHHHTCCEECHHHHHHHHHHHHCG T ss_pred CCCCCCCCCHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 8564268984660662200114896555036655655464315899999999998589 No 57 >2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A* Probab=98.66 E-value=1.7e-07 Score=63.89 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=88.4 Q ss_pred CEEEEEECCCCEEEEEE-----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHH Q ss_conf 56899997896297764-----3998307526989999999985135777787660351787720036644345101234 Q gi|254780435|r 29 PYYTLLDTNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~k-----n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~t 103 (336) .+.+|+ .-|+|+||+ +++.++..+|+||-+|+.++...+++|++++|++|. +......++ ..+.+| T Consensus 83 ~a~lV~--~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~lig~lv~~G~l~ldd~v~--~ylPe~~~~-----~~~~iT 153 (392) T 2dcf_A 83 DAFLVL--RGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVT--EYVPELAGS-----VYDGPS 153 (392) T ss_dssp EEEEEE--ETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGG--GTCGGGTTS-----TTSSCB T ss_pred CEEEEE--ECCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC--EECHHHCCC-----CCCCCC T ss_conf 189999--99999999648999978826257679999999999999839655433300--203322145-----334454 Q ss_pred HHHHHHHHH-------------------------------------------H-------HHHHHHHHHHH---HHHCCC Q ss_conf 677767677-------------------------------------------7-------42358999997---640111 Q gi|254780435|r 104 LDNALKLLI-------------------------------------------V-------KSANDIAVAIA---ESLCKT 130 (336) Q Consensus 104 v~dll~~~l-------------------------------------------i-------~S~Ndaa~aLA---e~i~Gs 130 (336) +++||...- . .=.|-...+|+ |.+.| T Consensus 154 ir~LL~mtsGl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~f~Y~~~~~~llg~vle~~tG- 232 (392) T 2dcf_A 154 VLQVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTG- 232 (392) T ss_dssp HHHHHTTCBCCSCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHC- T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHC- T ss_conf 9888544278876545355630456666654202123368799999875176679997599956878999999999979- Q ss_pred HHHHHHHHHHHH-HHCCCCCCEEE--CCCCCCC--CCCCCCHHHHHHHHHHHHH Q ss_conf 789999999999-87098353441--2357646--2222569999999898763 Q gi|254780435|r 131 EKKFVQHMNNTS-KNLGLSATHFM--NAHGVVQ--HGHYTTARDMAILSWRIKT 179 (336) Q Consensus 131 ~~~Fv~~MN~~a-~~lG~~~T~f~--n~~Gl~~--~~~~tTa~Dla~l~~~~~~ 179 (336) ..|.+.|.++. +.|||.++.+. ++.|.+. .+-.+|++|++++..-++. T Consensus 233 -~~~~~~~~e~i~~plG~~~~~~~~~~~~g~~~~~~Gl~~t~rD~ar~g~l~l~ 285 (392) T 2dcf_A 233 -LRYVEALSTYLWAKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLD 285 (392) T ss_dssp -SCHHHHHHHHTGGGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHT T ss_pred -CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf -98899889885165677655530237778743335676778899999999971 No 58 >3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Probab=98.54 E-value=7.7e-06 Score=53.74 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=86.0 Q ss_pred CCEEEEEECCCCEEEEEEC------------------------------------CCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 8568999978962977643------------------------------------9983075269899999999851357 Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY------------------------------------PDHPWNPASLTKLMTAYVVFSFLKE 71 (336) Q Consensus 28 a~~~i~~d~~tG~iL~~kn------------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~ 71 (336) .-++++||..||+||.=-+ ....+||+|+-|++|+..+|+ + T Consensus 151 ~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~~pl~Nra~~~~y~PGStfK~~t~aaaLe---~ 227 (483) T 3lo7_A 151 KGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALA---A 227 (483) T ss_dssp CEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTTCTTSCTTTSCCBCCGGGGHHHHHHHHHH---T T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH---C T ss_conf 2799999789992999960688882101367741127999873146433101404412537988489999999998---0 Q ss_pred CCCCCCCEEEECHHHHHCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 77787660351787720036644--------3451012346777676777423589999976401117899999999998 Q gi|254780435|r 72 KKAMLTTPITISKNASEYPPSNS--------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 (336) Q Consensus 72 g~~~ld~~v~vs~~~~~~~~s~~--------~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~ 143 (336) |....++... .. ....+++.. .......+++++ .+..|.|-+..-++..+| .+.+.+.++ T Consensus 228 G~~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~----Al~~S~N~~f~~l~~~~G------~~~~~~~~~ 295 (483) T 3lo7_A 228 GATETEQLTA-AP-TIPLPGSTAQLENYGGAPCGDEPTVSLRE----AFVKSCNTAFVQLGIRTG------ADALRSMAR 295 (483) T ss_dssp TCCTTCEEEC-CS-BCCC-------BCC---CCSSSSEEEHHH----HHHTTCHHHHHHHHHHHC------HHHHHHHHH T ss_pred CCCCEEEEEC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHCCHHHHHHHHHHC------CHHHHHHHH T ss_conf 9852000103-68-61136864211100254468987343999----998604258889999839------403433577 Q ss_pred HCCCCCCEEECCCCCCC-------------------CCCCCCHHHHHHHHHHHHHH Q ss_conf 70983534412357646-------------------22225699999998987631 Q gi|254780435|r 144 NLGLSATHFMNAHGVVQ-------------------HGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 144 ~lG~~~T~f~n~~Gl~~-------------------~~~~tTa~Dla~l~~~~~~~ 180 (336) .+|+.......+-++.. .+...|+-.||.+...+..+ T Consensus 296 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANg 351 (483) T 3lo7_A 296 AFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANG 351 (483) T ss_dssp HTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTT T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCC T ss_conf 60899855677644443445653334543220110455446778877766654259 No 59 >2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A Probab=98.52 E-value=4.8e-05 Score=48.91 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=90.7 Q ss_pred CEEEEEECCCCEEEEEEC-----------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCC Q ss_conf 568999978962977643-----------------998307526989999999985135777787660351787720036 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY-----------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn-----------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~ 91 (336) -+++++|.+||+||.--+ ....++|+|+-|.+|++.+|| +|.+++++.+.-...... +. T Consensus 343 ~~~vv~dp~tG~IlAm~~~~~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~~aALe---~g~~~~~~~~~d~~~~~~-~~ 418 (680) T 2wad_A 343 VYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWE---NGVLSGNQTLTDQPIVFQ-GS 418 (680) T ss_dssp EEEEEECTTTCBEEEEEEEEECTTTCCEEECTTHHHHCCBCCGGGGHHHHHHHHHH---TTSCCSSCCEEECCBCBT-TS T ss_pred EEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCCCCC-CC T ss_conf 69999966658044136763122100134544201111357875216788999997---089998735713784223-68 Q ss_pred CCC--CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCCCCCCEEEC Q ss_conf 644--34510---1234677767677742358999997640111------------789999999999870983534412 Q gi|254780435|r 92 SNS--TFKKG---STMTLDNALKLLIVKSANDIAVAIAESLCKT------------EKKFVQHMNNTSKNLGLSATHFMN 154 (336) Q Consensus 92 s~~--~l~~g---~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs------------~~~Fv~~MN~~a~~lG~~~T~f~n 154 (336) ... .-..| ..+|+++. |..|.|-.+.-+|+.++|. .+.-++.+.+.++.+|+....-.+ T Consensus 419 ~~~~~~~~~~~~~g~itl~~A----l~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~ 494 (680) T 2wad_A 419 APIYSWYKLAYGSFPITAVEA----LEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGID 494 (680) T ss_dssp CCBCCTTTTTTCSEEECHHHH----HHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCS T ss_pred CCCCCCCCCCCCCCCCCHHHH----HHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 864210136778877205636----4507559999999875024454033304267876546889999970998656886 Q ss_pred ----CCCC-CC-------------CCCCCCHHHHHHHHHHHHH Q ss_conf ----3576-46-------------2222569999999898763 Q gi|254780435|r 155 ----AHGV-VQ-------------HGHYTTARDMAILSWRIKT 179 (336) Q Consensus 155 ----~~Gl-~~-------------~~~~tTa~Dla~l~~~~~~ 179 (336) ..|+ |+ .+...|+-.||.....+.. T Consensus 495 lp~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~iaN 537 (680) T 2wad_A 495 LPDESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIAN 537 (680) T ss_dssp SSCCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 6544567677523333223223577677899999999999975 No 60 >1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C* Probab=98.50 E-value=2e-05 Score=51.21 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=83.9 Q ss_pred CEEEEEECCCCEEEEEE-------C---------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH Q ss_conf 56899997896297764-------3---------------9983075269899999999851357777876603517877 Q gi|254780435|r 29 PYYTLLDTNTGHVIAEN-------Y---------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~k-------n---------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~ 86 (336) -++++||..||+||.-- | ....++|+|+-|++|+..+++ +|.+++++.+.-... T Consensus 241 g~~Vvmd~~TG~IlAmas~p~~d~n~~~~~~~~~~~~~~~~~~~~~PGStfK~~t~aaALe---~g~~~~~~~~~~~~~- 316 (702) T 1qme_A 241 MTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAID---NNTFPGGEVFNSSEL- 316 (702) T ss_dssp EEEEEEETTTCBEEEEEEESCCCTTTCTTCCTTCCCCCTTTSCCBCCGGGGHHHHHHHHHH---TTCCCTTCEEECSCE- T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCC- T ss_conf 3799997789908998325777755443456322202531011257752022998999997---697323302301340- Q ss_pred HHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-EEECC--- Q ss_conf 20036644-------34510123467776767774235899999764011178999999999987098353-44123--- Q gi|254780435|r 87 SEYPPSNS-------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT-HFMNA--- 155 (336) Q Consensus 87 ~~~~~s~~-------~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T-~f~n~--- 155 (336) ..++... ....+-.+++++. +..|.|-++..+++.+| .+.+-+.++.+|+... .+.-| T Consensus 317 -~~~~~~~~~~~~~~~~~~~G~itl~~a----l~~S~N~~~~~l~~~lG------~~~~~~~~~~fG~g~~t~i~~~~e~ 385 (702) T 1qme_A 317 -KIADATIRDWDVNEGLTGGRMMTFSQG----FAHSSNVGMTLLEQKMG------DATWLDYLNRFKFGVPTRFGLTDEY 385 (702) T ss_dssp -EETTEEECCHHHHTTSCSCCEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTTTSCCCCSSSSCC T ss_pred -EECCCCCCCCCCCCCCCCCCEEEHHHH----CCCCCCHHHHHHHHHCC------CHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf -436852102446766778720013441----25233712566654258------4367889886078866688875345 Q ss_pred CCC-CC------------CCCCCCHHHHHHHHHHHHH Q ss_conf 576-46------------2222569999999898763 Q gi|254780435|r 156 HGV-VQ------------HGHYTTARDMAILSWRIKT 179 (336) Q Consensus 156 ~Gl-~~------------~~~~tTa~Dla~l~~~~~~ 179 (336) .|. +. .+...|+-+|+.....++. T Consensus 386 ~g~~p~~~~~~~a~~~~Gq~~~vTPlqma~ayaaiAN 422 (702) T 1qme_A 386 AGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIAN 422 (702) T ss_dssp CCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHC T ss_conf 7768765533333143079866799999999999971 No 61 >3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A* Probab=98.50 E-value=2.6e-05 Score=50.48 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=120.4 Q ss_pred CCCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECH Q ss_conf 4785689999789629776439---------------------9830752698999999998513577778766035178 Q gi|254780435|r 26 NKLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 (336) Q Consensus 26 ~~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~ 84 (336) ...-++++||..||+||.--.. ...++|+|+.|.+|++.+++ .|.++.+..+.... T Consensus 221 ~~~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~---~g~~~~~~~~~~~~ 297 (542) T 3equ_A 221 AKAGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALD---AGKTDLNERLNTQP 297 (542) T ss_dssp CSEEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHH---HTSSCTTCEEECCC T ss_pred CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH---CCCEECCEECCCCC T ss_conf 556348985067783676426776662212356631124344407677842666899999985---69630330114577 Q ss_pred HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CEEECC---CCCC Q ss_conf 772003664-43451012346777676777423589999976401117899999999998709835-344123---5764 Q gi|254780435|r 85 NASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNA---HGVV 159 (336) Q Consensus 85 ~~~~~~~s~-~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~-T~f~n~---~Gl~ 159 (336) .. .++.. ..-.....+++++. +..|.|....-|++.+| .+.|-+.++++|+.. |-+.=| .|.. T Consensus 298 ~~--~~~~~~~~~~~~G~~~l~~a----l~~S~N~~~~~l~~~~g------~~~~~~~~~~fG~g~~t~idlp~e~~~~~ 365 (542) T 3equ_A 298 YK--IGPSPVRDTHVYPSLDVRGI----MQKSSNVGTSKLSARFG------AEEMYDFYHELGIGVRMHSGFPGETAGLL 365 (542) T ss_dssp EE--ETTEEECCSSCCSEEEHHHH----HHHTCHHHHHHHHTTSC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC T ss_pred CC--CCCCCCCCCCCCCCCCHHHH----HHCCCEEHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 53--44321123367784248998----54174515457888729------58899999974998656899875434543 Q ss_pred ----------------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEE----------------EE---C Q ss_conf ----------------62222569999999898763123311012302000-174478----------------60---1 Q gi|254780435|r 160 ----------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKY----------------PN---T 203 (336) Q Consensus 160 ----------------~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~----------------~N---~ 203 (336) ..+...|+-.|+.....+..+ ..+..-.-.+... ..+... .+ + T Consensus 366 ~~~~~~~~~~~~~~~~Gqg~~~Tplq~a~~~a~iaN~-G~~~~p~~v~~i~~~~~~~~~~~~~a~~i~~~l~~Vv~~~GT 444 (542) T 3equ_A 366 RNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHD-GVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGT 444 (542) T ss_dssp CCGGGCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT-TEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSS T ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEEEEC-CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEECCCCC T ss_conf 4433467311223204776568889985552325208-789987654420278775324477899999899863727981 Q ss_pred CCCCCCCCC-EEEEEEECCHHH--------H--HEEEEEEEEC-CEEEEEEEECCCCH------HHHHHHHHHHHHHHHH Q ss_conf 456566897-115332124112--------0--0023456428-86899998378986------6789999999999985 Q gi|254780435|r 204 NWAVGTFLG-ADGMKTGFTCAS--------G--FNIVASAIQG-DQSLIAVILGALDR------NTRNKVSASLLSMGFY 265 (336) Q Consensus 204 N~ll~~~~g-v~G~KTG~t~~A--------G--~~lv~~a~~~-g~~li~Vvlg~~~~------~~r~~~~~~Ll~~~f~ 265 (336) -... ..+| -.++|||+.... . .-|++.+-.+ .+-.++|++..+.. ..-..-.+++++..++ T Consensus 445 g~~a-~~~g~~vaGKTGTAq~~~~g~~~~~~~~awFvGy~P~~~p~~av~V~v~~~~~~g~~G~~~AaPi~~~i~~~~l~ 523 (542) T 3equ_A 445 GTAG-AVDGFDVGAKTGTARKFVNGRYADNKHVATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLN 523 (542) T ss_dssp CGGG-CCTTSCCEEEEEEC-----------CCEEEEEEEESSSSCCEEEEEEEESCCSSCCCHHHHTHHHHHHHHHHHHH T ss_pred EEEC-CCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 8720-579954899920001567885578984699999988799859999999428989875678999999999999999 Q ss_pred HC Q ss_conf 14 Q gi|254780435|r 266 NK 267 (336) Q Consensus 266 ~f 267 (336) -+ T Consensus 524 ~~ 525 (542) T 3equ_A 524 IL 525 (542) T ss_dssp HT T ss_pred HC T ss_conf 76 No 62 >2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B* Probab=98.47 E-value=1.2e-05 Score=52.63 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=79.3 Q ss_pred CEEEEEECCCCEEEEE-------EC--------CCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCEEEEC-HHHHHCCC Q ss_conf 5689999789629776-------43--------998307526989999999-9851357777876603517-87720036 Q gi|254780435|r 29 PYYTLLDTNTGHVIAE-------NY--------PDHPWNPASLTKLMTAYV-VFSFLKEKKAMLTTPITIS-KNASEYPP 91 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~-------kn--------~~~~~~~AS~tKlmTa~~-~~~~i~~g~~~ld~~v~vs-~~~~~~~~ 91 (336) -++++||..||+||.- .| ....++|+|+-|.+|+|. ++| +|.+..+..+... ......++ T Consensus 66 ~a~vv~d~~TG~IlA~vg~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~~aaale---~g~~~~~~~~~~~~~~~~~~~~ 142 (390) T 2v2f_F 66 VASTVVDVSNGKVIAQLGARHQASNVSFGTNQAVETNRDWGSAMKPITDYAPAIE---YGVYDSTATMVNDIPYNYPGTS 142 (390) T ss_dssp EEEEEEETTTTEEEEEECCCC-----CCCCCTTTCCCSCCGGGGHHHHTHHHHHH---TTSCSBTTCEEEESCEECTTSS T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCCCCCC T ss_conf 8999998899949999967877767655643222056688741779999999997---6986664057526761015799 Q ss_pred C---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC----CCC--CCC Q ss_conf 6---4434510123467776767774235899999764011178999999999987098353441235----764--622 Q gi|254780435|r 92 S---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH----GVV--QHG 162 (336) Q Consensus 92 s---~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~----Gl~--~~~ 162 (336) . +..-...-.+++++. |..|.|-.+.-|++.+| .+.+-+.++.+|+..-...... ++. ..+ T Consensus 143 ~~~~n~~~~~~G~vtl~~A----l~~S~N~~~~~l~~~~G------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 212 (390) T 2v2f_F 143 TPVYNWDRAYFGNITLQYA----LQQSRNVTAVETLNKVG------LDRAKTFLNGLGIDYPSMHYANAISSNTTESNKQ 212 (390) T ss_dssp CEECCTTSCCCEEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHTTTCCCSSCCGGGGSCSCSSCCCTT T ss_pred CCCCCCCCCCCCCEEHHHH----HHHCCHHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC T ss_conf 8743079985774229999----98633037889987539------2789999998299987644442223211105864 Q ss_pred CCCCHHHHHHHHHHHHH Q ss_conf 22569999999898763 Q gi|254780435|r 163 HYTTARDMAILSWRIKT 179 (336) Q Consensus 163 ~~tTa~Dla~l~~~~~~ 179 (336) .-.|+-+|+.....+.. T Consensus 213 ~~vtplqma~ayaaiaN 229 (390) T 2v2f_F 213 YGASSEKMAAAYAAFAN 229 (390) T ss_dssp SSCCHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHC T ss_conf 04589999999999864 No 63 >3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A* Probab=98.47 E-value=2.4e-05 Score=50.72 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=89.4 Q ss_pred CCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH Q ss_conf 785689999789629776439---------------------98307526989999999985135777787660351787 Q gi|254780435|r 27 KLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 (336) Q Consensus 27 ~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~ 85 (336) ...++++||..||+||.--+. ...++|+|+.|.+|+..+++ +|.++.++.+..... T Consensus 230 ~~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle---~g~~~~~~~~~~~~~ 306 (564) T 3oc2_A 230 KAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALA---SGRWKPSDIVDVYPG 306 (564) T ss_dssp CCEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHH---TTSCCTTCEEECTTS T ss_pred CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCC T ss_conf 50269997268883887237898664321246846777577618678863577899999997---797256426752786 Q ss_pred HHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC----CC Q ss_conf 720036--644345101234677767677742358999997640111789999999999870983534412-35----76 Q gi|254780435|r 86 ASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-AH----GV 158 (336) Q Consensus 86 ~~~~~~--s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n-~~----Gl 158 (336) ....+. ..-.-.....++++++ +..|.|....-+++.++ .+.|.+.++.+|+....-.+ |. .+ T Consensus 307 ~~~~g~~~~~~~~~~~g~~~l~~a----l~~S~Nv~f~~l~~~lg------~~~~~~~~~~fG~g~~~~id~p~~~~~~~ 376 (564) T 3oc2_A 307 TLQIGRYTIRDVSRNSRQLDLTGI----LIKSSNVGISKIAFDIG------AESIYSVMQQVGLGQDTGLGFPGERVGNL 376 (564) T ss_dssp EEEETTEEEECSCCCCSEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC T ss_pred CEECCCCEEECCCCCCCCHHHHHH----HHCCCCHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 253587102013234552021110----12166719999999875------89999999977998777999742215777 Q ss_pred C---------------CCCCCCCHHHHHHHHHHHHHH Q ss_conf 4---------------622225699999998987631 Q gi|254780435|r 159 V---------------QHGHYTTARDMAILSWRIKTD 180 (336) Q Consensus 159 ~---------------~~~~~tTa~Dla~l~~~~~~~ 180 (336) + ..+...|+-.||.....+..+ T Consensus 377 ~~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~iAN~ 413 (564) T 3oc2_A 377 PNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALAND 413 (564) T ss_dssp CCCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC T ss_conf 7644322332002213887346799999988762279 No 64 >3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* Probab=98.33 E-value=9e-05 Score=47.23 Aligned_cols=202 Identities=18% Similarity=0.111 Sum_probs=108.6 Q ss_pred CEEEEEECCCCEEEEEECC------------CCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCEEEECHHHHHCCCCCCC Q ss_conf 5689999789629776439------------983075269899999999851357777-876603517877200366443 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENYP------------DHPWNPASLTKLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNST 95 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn~------------~~~~~~AS~tKlmTa~~~~~~i~~g~~-~ld~~v~vs~~~~~~~~s~~~ 95 (336) -+.+++|..||+||.=-+. +.+++|+|+.|..+.+.++++ |.. ++++.+.-.+.....++...+ T Consensus 419 gA~Vv~Dp~TGeIlAmvGg~~~~~~~fNra~~a~r~pGSt~KP~~y~aAL~~---g~~~~~~t~~~D~p~~~~~~~g~~~ 495 (751) T 3fwm_A 419 TAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ---PKIYRLNTWIADAPIALRQPNGQVW 495 (751) T ss_dssp EEEEEEETTTCBEEEEECSSSCSSCSSCHHHHCCEECGGGGHHHHHHHHHTC---TTTCCTTCEEECSCCCEECSSSCEE T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHC---CCCCCCCEEECCCCEEEECCCCCCC T ss_conf 5899986899978999644423445555000134455554541789999973---8874453374267637757998531 Q ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCCCCCCCCCC Q ss_conf --------451012346777676777423589999976401117899999999998709835344-12357646222256 Q gi|254780435|r 96 --------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-MNAHGVVQHGHYTT 166 (336) Q Consensus 96 --------l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-~n~~Gl~~~~~~tT 166 (336) ....-.+++++. +..|.|-++.-|+..+| ++.+-+.++++|+..... ..|+-. -...-.| T Consensus 496 ~p~n~d~~~~~~G~v~l~~A----L~~S~N~~~v~l~~~lG------~~~~~~~~~k~Gi~~~~~~~~ps~~-lG~~~vT 564 (751) T 3fwm_A 496 SPQNDDRRYSESGRVMLVDA----LTRSMNVPTVNLGMALG------LPAVTETWIKLGVPKDQLHPVPAML-LGALNLT 564 (751) T ss_dssp CCCCTTSCCCTTSEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHHTCCGGGCCCSGGGG-GTCCEEC T ss_pred CCCCCCCCCCCCCCEEHHHH----HHHHHHHHHHHHHHHHC------HHHHHHHHHHCCCCCCCCCCCCHHH-CCCCCCC T ss_conf 78667766578762314334----34023599999988628------0899999998499855678980665-3886257 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEEEE----------------CCCCC-------------CCCCC-EEE Q ss_conf 9999999898763123311012302000-17447860----------------14565-------------66897-115 Q gi|254780435|r 167 ARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKYPN----------------TNWAV-------------GTFLG-ADG 215 (336) Q Consensus 167 a~Dla~l~~~~~~~~p~~~~~~~~~~~~-~~~~~~~N----------------~N~ll-------------~~~~g-v~G 215 (336) +-+||.....+..+ =.+.+-.-.+.+. ..+..+.. .+.+| ...++ -.+ T Consensus 565 PlqmA~aYatiANg-G~~~~P~~I~~I~d~dG~vi~~~~~~~~~vis~~tA~~v~~~M~~VV~~GTg~~~~~~~~~~~vA 643 (751) T 3fwm_A 565 PIEVAQAFQTIASG-GNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLA 643 (751) T ss_dssp HHHHHHHHHHHHTT-SEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTSTTHHHHHHSGGGCCE T ss_pred HHHHHHHHHHHHCC-CEEECCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEE T ss_conf 88988899999749-85835689999998999887036897763689999999999999875556730011238997599 Q ss_pred EEEECCHHHHH-EEEEEEEECCEEEEEEEECCCC Q ss_conf 33212411200-0234564288689999837898 Q gi|254780435|r 216 MKTGFTCASGF-NIVASAIQGDQSLIAVILGALD 248 (336) Q Consensus 216 ~KTG~t~~AG~-~lv~~a~~~g~~li~Vvlg~~~ 248 (336) +|||+|+...- -+|+. +++-.++|.+|.++ T Consensus 644 GKTGTT~~~rDaWFvG~---tp~~~~~VWvG~Dd 674 (751) T 3fwm_A 644 GKTGTTNNNVDTWFAGI---DGSTVTITWVGRDN 674 (751) T ss_dssp EEEEECGGGSEEEEEEE---CSSEEEEEEEECTT T ss_pred EECCCCCCCCEEEEEEC---CCCEEEEEEEECCC T ss_conf 98863799705999985---89969999997789 No 65 >1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Probab=97.78 E-value=0.00092 Score=41.08 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=88.0 Q ss_pred CCCEEEEEECCCCEEEEEEC--------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 78568999978962977643--------------------------------9983075269899999999851357777 Q gi|254780435|r 27 KLPYYTLLDTNTGHVIAENY--------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74 (336) Q Consensus 27 ~a~~~i~~d~~tG~iL~~kn--------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~ 74 (336) ...+++++|..||+||.--+ ....++|+|+-|++|+..+|+ .|.+ T Consensus 321 ~~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i 397 (646) T 1vqq_A 321 DYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTL 397 (646) T ss_dssp SSEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSS T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCC T ss_conf 3352899824667067775057655442114653122122335621455555451113454201788999997---6997 Q ss_pred CCCCEEEECHHHHHCC----CCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC Q ss_conf 8766035178772003----6644-3451-01234677767677742358999997640111789999999999870983 Q gi|254780435|r 75 MLTTPITISKNASEYP----PSNS-TFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 (336) Q Consensus 75 ~ld~~v~vs~~~~~~~----~s~~-~l~~-g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~ 148 (336) ++++.+..+...+..+ +... .... .-.+++++ .+..|+|....-||..++. +.+-+.|+++|+- T Consensus 398 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v~l~~----al~~S~N~~f~~la~~lg~------~~l~~~a~~fG~g 467 (646) T 1vqq_A 398 DDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ----AIESSDNIFFARVALELGS------KKFEKGMKKLGVG 467 (646) T ss_dssp CTTCEEEECSSEECSSGGGTTCCEECSSCCCEEEEHHH----HHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTTT T ss_pred CCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHCCCC T ss_conf 99987994784143467767643346678887232120----3057878999999987638------8999888763689 Q ss_pred CCE-EE--C-CCCCCC---------------CC-CCCCHHHHHHHHHHHHH Q ss_conf 534-41--2-357646---------------22-22569999999898763 Q gi|254780435|r 149 ATH-FM--N-AHGVVQ---------------HG-HYTTARDMAILSWRIKT 179 (336) Q Consensus 149 ~T~-f~--n-~~Gl~~---------------~~-~~tTa~Dla~l~~~~~~ 179 (336) ... +. . ..+++. .+ -..|+-.||.+...++. T Consensus 468 ~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v~vTPLqmA~ayaaiAN 518 (646) T 1vqq_A 468 EDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALEN 518 (646) T ss_dssp SCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSCBBCHHHHHHHHHGGGT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 888866655434467766787522422046777512379999999999974 No 66 >2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A* Probab=96.75 E-value=0.0021 Score=38.96 Aligned_cols=138 Identities=21% Similarity=0.104 Sum_probs=79.3 Q ss_pred EEEEEECCCCEEEEE------------ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC---CC Q ss_conf 689999789629776------------439983075269899999999851357777876603517877200366---44 Q gi|254780435|r 30 YYTLLDTNTGHVIAE------------NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NS 94 (336) Q Consensus 30 ~~i~~d~~tG~iL~~------------kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s---~~ 94 (336) ++++||..||+||.= .-...+++|+|+-|..+++.++.+ .+....+..+.-.. ....++. +. T Consensus 303 a~vv~d~~TG~IlAmvgg~~~~~~~~~~~~~~~r~pGStfKp~~~~aa~~e--~~~~~~~~~~~~~~-~~~~~~~~~~N~ 379 (669) T 2olv_A 303 GATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIE--NMKWATNHAIQDES-SYQVDGSTFRNY 379 (669) T ss_dssp EEEEEETTTCBEEEEESSTTCCTTTSCCTTSSCEECGGGGHHHHTHHHHHH--HHCCCTTBEEECCS-CEESSSCEECCS T ss_pred EEEEEECCCCCEEEEECCCCCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCCCCCC-CCCCCCCCCCCC T ss_conf 899997899918999627741000330545220456643331245444422--66432221134666-543467654368 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC---CCCCCCCCCCCHHHHH Q ss_conf 3451012346777676777423589999976401117899999999998709835344123---5764622225699999 Q gi|254780435|r 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA---HGVVQHGHYTTARDMA 171 (336) Q Consensus 95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~---~Gl~~~~~~tTa~Dla 171 (336) .-+-.-.+++++. |..|.|-.++-++..++- +.+++.+.+.++.+|+....-.+| -|+ ...-.|+-+|+ T Consensus 380 ~~~~~G~vtl~~A----l~~S~N~~av~l~~~lg~--~~g~~~~~~~~~~~Gi~~~~~~~~~~~lg~--g~~~vtplqma 451 (669) T 2olv_A 380 DTKSHGTVSIYDA----LRQSFNIPALKAWQSVKQ--NAGNDAPKKFAAKLGLNYEGDIGPSEVLGG--SASEFSPTQLA 451 (669) T ss_dssp SCSCCCEEEHHHH----HHTTCHHHHHHHHHHHHH--HTCTTHHHHHHHTTTCCCSSCCCHHHHTTC--TTCEECHHHHH T ss_pred CCCCCCCHHHHHH----HHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCHHHCCC--CCCCCCHHHHH T ss_conf 8876675489999----874862899999999988--764789999999809995234674010357--63324688999 Q ss_pred HHHHHHH Q ss_conf 9989876 Q gi|254780435|r 172 ILSWRIK 178 (336) Q Consensus 172 ~l~~~~~ 178 (336) .....+. T Consensus 452 ~ayat~A 458 (669) T 2olv_A 452 SAFAAIA 458 (669) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999986 No 67 >2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B Probab=96.72 E-value=0.025 Score=32.33 Aligned_cols=138 Identities=16% Similarity=0.031 Sum_probs=76.1 Q ss_pred CEEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCC Q ss_conf 568999978962977643------------998307526989999-9999851357777876603517877200366443 Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmT-a~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~ 95 (336) -++++||..||+||.=-. .+.+++|+|+.|-++ ...++| +|....++.+.-++... .++.... T Consensus 125 ~a~Vv~d~~TG~IlAmvgg~~y~~~~~Nra~~~~rqPGStfKP~v~yaaAle---~g~~~~~t~~~d~p~~~-~~~~~~~ 200 (494) T 2bg1_A 125 VGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAID---QGLMGSETILSNYPTNF-ANGNPIM 200 (494) T ss_dssp EEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHH---TTSCCTTCEEECSCCBC-TTSCBCC T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCEE-CCCCCEE T ss_conf 9999998999909999989899977656757088687223999999999997---69999755557887211-3667424 Q ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCHHHHH Q ss_conf 4---5101234677767677742358999997640111789999999999870983534412357646-22225699999 Q gi|254780435|r 96 F---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMA 171 (336) Q Consensus 96 l---~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~-~~~~tTa~Dla 171 (336) . .-.-.+++++ .|..|.|-.+.-+++.++-.--.+ -..++.+|...-.+..++ +.- ...-.|+-+|+ T Consensus 201 ~~~~~~~G~vtl~~----al~~S~Ni~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~s-~a~Gg~~~vTplqma 271 (494) T 2bg1_A 201 YANSKGTGMMTLGE----ALNYSWNIPAYWTYRMLRENGVDV----KGYMEKMGYEIPEYGIES-LPMGGGIEVTVAQHT 271 (494) T ss_dssp BTTBCCCCEEEHHH----HHHHTCSHHHHHHHHHHHHTTCCH----HHHHHHTTCCCSCCCCTT-GGGTTTCCBCHHHHH T ss_pred CCCCCCCCEEEHHH----HHHHCCCHHHHHHHHHHCCCCHHH----HHHHHCCCCCCCCCCCCC-HHCCCCCCCCHHHHH T ss_conf 46787874468999----986374618888898854442433----444413577887666221-001687554206888 Q ss_pred HHHHHHHH Q ss_conf 99898763 Q gi|254780435|r 172 ILSWRIKT 179 (336) Q Consensus 172 ~l~~~~~~ 179 (336) .....+.. T Consensus 272 ~ayat~AN 279 (494) T 2bg1_A 272 NGYQTLAN 279 (494) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 99999972 No 68 >2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A* Probab=94.99 E-value=0.17 Score=27.33 Aligned_cols=138 Identities=17% Similarity=0.031 Sum_probs=77.1 Q ss_pred CEEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCC- Q ss_conf 568999978962977643------------998307526989999-999985135777787660351787720036644- Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNS- 94 (336) Q Consensus 29 ~~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmT-a~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~- 94 (336) -++++||..||+||.=-. .+.+++|+|.+|-.. ...++ ++|....++.+.-+.... .++... T Consensus 351 ~a~Vv~Dp~TG~IlAmvGg~~~~~~~~n~a~~a~rqpGSs~Kp~~~yaaAl---e~G~~~~~t~~~d~~~~~-~~~~~~~ 426 (720) T 2jch_A 351 VGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAI---DQGLMGSETILSNYPTNF-ANGNPIM 426 (720) T ss_dssp EEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHH---HTTSCCTTCEEECSCCBC-TTSCBCC T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH---HCCCCCCCEEEECCCCCC-CCCCCCC T ss_conf 679999889997889842785001123220024444013220257799998---649999861773278333-4688531 Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC-CCCCHHHHH Q ss_conf --34510123467776767774235899999764011178999999999987098353441235764622-225699999 Q gi|254780435|r 95 --TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMA 171 (336) Q Consensus 95 --~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~-~~tTa~Dla 171 (336) .-+-.-.+|+++.| ..|.|-++.-+++.++..--. .-..++.+|.....+..+ .+.-.+ .-.|+-+|+ T Consensus 427 ~~~~~~~G~vtl~~Al----~~S~Nv~a~~~~~~~~~~g~~----~~~~~~~~G~~~~~~~~~-slalGg~~~vTplqma 497 (720) T 2jch_A 427 YANSKGTGMMTLGEAL----NYSWNIPAYWTYRMLRENGVD----VKGYMEKMGYEIPEYGIE-SLPMGGGIEVTVAQHT 497 (720) T ss_dssp BTTBCCCSEEEHHHHH----HHTCSHHHHHHHHHHHHTTCC----HHHHHHHTTCCCSCCCCT-TGGGTTTCCBCHHHHH T ss_pred CCCCCCCCCCCHHHHH----HHCCCHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCCC-CHHHHCCCCCCCHHHH T ss_conf 4666678733288998----846774589999985011156----999999739986555653-3234122342003422 Q ss_pred HHHHHHHH Q ss_conf 99898763 Q gi|254780435|r 172 ILSWRIKT 179 (336) Q Consensus 172 ~l~~~~~~ 179 (336) .....+.. T Consensus 498 ~aYat~AN 505 (720) T 2jch_A 498 NGYQTLAN 505 (720) T ss_dssp HHHHHHHT T ss_pred HHHHHHHC T ss_conf 13003114 No 69 >1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* Probab=55.66 E-value=9.1 Score=16.75 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=33.7 Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 8999978962977643998307526989999999985135 Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336) Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336) +|.+=.-.|++...-+++.++++-|++|++|..++++..- T Consensus 53 giai~t~dG~~~~~GD~~~~FsiQSisK~f~l~~al~~~G 92 (330) T 1mki_A 53 GICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRG 92 (330) T ss_dssp EEEEECTTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHC T ss_pred EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC T ss_conf 8999937995896688588654799899999999999879 No 70 >1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2 Probab=47.83 E-value=12 Score=15.99 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.9 Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 8999978962977643998307526989999999985135 Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336) Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336) +|.+=...|++.-.-+.+.++++-|++|.++..++++.+- T Consensus 42 giai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~G 81 (310) T 1u60_A 42 AVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVG 81 (310) T ss_dssp EEEEEETTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHC T ss_pred EEEEEECCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHC T ss_conf 9999946990896379898770899999999999997659 No 71 >2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426} Probab=46.97 E-value=12 Score=15.91 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=32.8 Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 8999978962977643998307526989999999985135 Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336) Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336) ++.+-.-.|+++..-+.+.++++-|++|..+..++++.+- T Consensus 41 giai~t~dG~~~~~GD~~~~FsiqSisK~f~~~~al~~~G 80 (308) T 2pby_A 41 SIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRG 80 (308) T ss_dssp EEEEEETTTEEEEEESTTCCEECTTHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC T ss_conf 8999937997895478888676899999999999999879 No 72 >3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens} Probab=40.14 E-value=16 Score=15.26 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=32.9 Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 8999978962977643998307526989999999985135 Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336) Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336) ++.+=...|++..--+.+.++++-|++|..+..++++.+- T Consensus 44 giai~t~dG~~~~~GD~~~~FsiqSisK~f~l~lal~~~G 83 (315) T 3czd_A 44 GVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLG 83 (315) T ss_dssp EEEEEETTSCEEEEESTTSCEECGGGGHHHHHHHHHHHHC T ss_pred EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC T ss_conf 8999917995884578588633899999999999998768 No 73 >2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* Probab=37.92 E-value=11 Score=16.14 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=26.2 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC Q ss_conf 94899999999999850035787544785689999789629776439983 Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50 (336) Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~ 50 (336) |||.++.+.++.+..+++....+.. .....+.++..-+.|.|....+.. T Consensus 1 mkk~l~~~~~~~~~~~~~~p~~~~~-~p~~~~~~~~~~~pV~F~H~~H~~ 49 (130) T 2a3m_A 1 MRKSLFAVMVLALVAAFALPVIAAE-APADGLKMENTKMPVIFNHSSHSS 49 (130) T ss_dssp -----------------------CC-CCCSCEEECSSSSCEEECGGGGTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCEECCHHHHCC T ss_conf 9049999999999999998887633-876333335788986457789767 No 74 >3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A Probab=37.36 E-value=18 Score=15.00 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=33.3 Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 8999978962977643998307526989999999985135 Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336) Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336) +|.+=.-.|++...-+.+.++++-|++|.++..++++.+- T Consensus 40 giai~t~dG~~~~~GD~~~~FsIQSiSKpf~~~lAl~~~G 79 (456) T 3ih8_A 40 GIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRG 79 (456) T ss_dssp EEEEECSSSCEEEEESTTCCEECGGGGHHHHHHHHHHHHH T ss_pred EEEEEECCCCEEECCCCCCCEECHHHHHHHHHHHHHHHHC T ss_conf 8999925997895678899671003899999999999879 No 75 >2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1 Probab=34.03 E-value=17 Score=15.12 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=8.2 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 94899999999999 Q gi|254780435|r 1 MRQFLVIIAMAMLS 14 (336) Q Consensus 1 mk~~~~~~~~~~~~ 14 (336) |||+++++++.+++ T Consensus 1 mkK~~i~f~~~l~~ 14 (186) T 2f2f_C 1 MKKYLLSFLLSMIL 14 (186) T ss_dssp -------------- T ss_pred CCHHHHHHHHHHHH T ss_conf 93248999999997 No 76 >1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Probab=29.94 E-value=5 Score=18.33 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.3 Q ss_pred HHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC Q ss_conf 74235899999-76401117899999999998709835344123 Q gi|254780435|r 113 VKSANDIAVAI-AESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 (336) Q Consensus 113 i~S~Ndaa~aL-Ae~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~ 155 (336) --+||.||+.+ ++.+. -+.|.+-|+|+|+..|-|.-| T Consensus 34 ~f~GNpaaVv~~~~~l~------~~~mq~IA~e~n~sET~Fv~~ 71 (298) T 1xub_A 34 PLEGNPVAVFFDADDLP------PAQMQRIAREMNLSESTFVLK 71 (298) T ss_dssp TTSSEEEEEECSGGGSC------HHHHHHHHHHHCSSCEEEEEC T ss_pred CCCCCCEEEEECCCCCC------HHHHHHHHHHHCCCEEEEEEC T ss_conf 99986159996898999------999999999869966999855 No 77 >1ksh_B Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase delta-subunit...; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* Probab=27.25 E-value=26 Score=13.96 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=15.7 Q ss_pred EEEEEECCCCEEEEEECCCCC Q ss_conf 689999789629776439983 Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHP 50 (336) Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~ 50 (336) .-.+=|++||+||++.+.+.- T Consensus 21 ~~~iRDaeTG~vlwe~~~d~~ 41 (152) T 1ksh_B 21 WMNLRDAETGKILWQGTEDLS 41 (152) T ss_dssp EEEEEETTTTEEEEEECSCTT T ss_pred EEEEEECCCCEEEEEECCCCC T ss_conf 888650776808986067877 Done!