BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] (336 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] gi|254040112|gb|ACT56908.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/336 (100%), Positives = 336/336 (100%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM Sbjct: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA Sbjct: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD Sbjct: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI Sbjct: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ Sbjct: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK Sbjct: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 >gi|315122117|ref|YP_004062606.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495519|gb|ADR52118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 282 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/270 (75%), Positives = 232/270 (85%), Gaps = 4/270 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL+ I +L I+PF +IAE N LPYYTLLD+NTGHVIAEN PD WNPASLTKLMTAY Sbjct: 11 FLIRITALILIGIYPFQAIAEENNLPYYTLLDSNTGHVIAENNPDKLWNPASLTKLMTAY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 VVFSFL++KK L TPITISKNASE PPSNSTFKKGS +TLDNALKLLIVKSANDIAVAI Sbjct: 71 VVFSFLEQKKITLETPITISKNASEQPPSNSTFKKGSILTLDNALKLLIVKSANDIAVAI 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AESLC TE++FV+HMN++++ LGL T FMN+HGVVQ+GHYTTARDM ILSWRIKT F Q Sbjct: 131 AESLCNTEEEFVKHMNDSAQTLGLLRTKFMNSHGVVQNGHYTTARDMTILSWRIKTHFSQ 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y HYFQIKGL+IK KKYPNTNWA+G FLGADGMKTGFTCASGFNIVASA QG++SLI V+ Sbjct: 191 YAHYFQIKGLKIKNKKYPNTNWAIGIFLGADGMKTGFTCASGFNIVASASQGNRSLITVV 250 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LGALDR++RN++S LLS GF D+K I Sbjct: 251 LGALDRDSRNQISEKLLSAGF----DKKNI 276 >gi|110635386|ref|YP_675594.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110286370|gb|ABG64429.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 382 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 188/291 (64%), Gaps = 7/291 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG V+A+ W PASLTKLMTAYVVF L+ + + +P+ IS+NA++ P Sbjct: 43 YVLVDVGTGRVLAQENAFQRWYPASLTKLMTAYVVFRELESGRLQINSPVRISQNAAKEP 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS + GS +TLDNALK+L+V SANDIA A+AES+ +E+ FV MN ++ LG++ + Sbjct: 103 PSKMGYSVGSVLTLDNALKILMVLSANDIATALAESVAGSEEAFVARMNAEAQRLGMTDS 162 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+NAHG+ +TTARD+AIL+ ++ FPQY YF I+G+ NTN+ +G F Sbjct: 163 HFINAHGLPGPSQFTTARDLAILARALRAQFPQYASYFSIEGIRNGKSVKENTNFLIGRF 222 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADGMKTG+ C+SGFN+VA+A +G+++L AV+LGA + R +++A LL+ GF +T Sbjct: 223 DGADGMKTGYICSSGFNLVATATRGERTLAAVVLGAQSQVQRAEIAADLLTRGF--ETQG 280 Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 I+ + ++ +V +I E+C+ + +MKE +D E I Sbjct: 281 LGAPSIVDLRPSEQVTEDVADIRPEICSEEA----VAKRMKE-RDDEGRLI 326 >gi|222087386|ref|YP_002545923.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221724834|gb|ACM27990.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 388 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/324 (39%), Positives = 194/324 (59%), Gaps = 7/324 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L ++ MA +++ FLS AE + L+D NTG V+ W PASLTKLMTAYV Sbjct: 12 LRLVPMAAAASML-FLSTAEVADANPHVLVDANTGRVLDHQEAFSKWYPASLTKLMTAYV 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L TP+ +SK AS P + FK G MTLDNALK+++VKSAND+A+A++ Sbjct: 71 TFRAIQSGQVSLDTPVVMSKLASAQPAAKMYFKPGQKMTLDNALKMMLVKSANDLAMAVS 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +++ FV MN + LG+ THF+N +G+ G YTTARD+A+LS ++ +FPQY Sbjct: 131 ETIGGSQQGFVARMNAEAARLGMLDTHFINPNGLPGQGQYTTARDLAVLSVALRREFPQY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF ++G K+ PN N +G + GADGMKTGF CA+GFN +ASA + ++LI+V+L Sbjct: 191 AGYFSLEGFTNGVKQVPNINMLIGRYDGADGMKTGFICAAGFNQIASATRNGRTLISVVL 250 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 G R SA+ L GF N+ K ++ + ++V +++ E+C+ + I Sbjct: 251 GTDSLAARADDSANFLEKGFQNQFSGKDTLANLRPYGPGQ--DQVADLTAEICSAKGAKI 308 Query: 305 NYNTQMKEAKDKES----HFIDFE 324 T+ + + K + H +D E Sbjct: 309 RSETRDEAGRMKVTSPYIHEMDHE 332 >gi|159185835|ref|NP_356978.2| penicillin-binding protein dacf precursor [Agrobacterium tumefaciens str. C58] gi|159140969|gb|AAK89763.2| penicillin-binding protein dacf precursor [Agrobacterium tumefaciens str. C58] Length = 389 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 174/289 (60%), Gaps = 8/289 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG VI+ W PASLTKLMTAY+ FS +K K T + +SK A++ P S Sbjct: 56 VVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKISPQTEVVMSKKAADQPAS 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G +T+D+ALKLL++KSANDIAVAIAE++ T FV MN ++ LG+S+TH+ Sbjct: 116 KMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTHY 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G YTTARD+A+L+ IK +FP+Y HYF ++G+ K Y N N VG F G Sbjct: 176 VNPNGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKNYANFNMLVGRFEG 235 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTGF CASGFN VASA++ +S+I V+LGA R SA LL MG + + Sbjct: 236 ADGMKTGFICASGFNQVASAVRNGRSVITVVLGADSLAGRTDQSADLLQMGLTAPSGQ-- 293 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 + + EV +IS E+C + + E +D+ + Sbjct: 294 -GVSLASLAPYGDTAEVNDISAEICNPKAAKVR-----SEGRDEAGRMV 336 >gi|332716423|ref|YP_004443889.1| penicillin-binding protein [Agrobacterium sp. H13-3] gi|325063108|gb|ADY66798.1| penicillin-binding protein [Agrobacterium sp. H13-3] Length = 372 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 175/289 (60%), Gaps = 8/289 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG VI+ W PASLTKLMTAY+ FS +K K T + +SK A++ P S Sbjct: 39 VVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKLSPQTEVVMSKKAADQPAS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G +T+D+ALKLL++KSANDIAVAIAE++ T FV MN ++ LG+S+T + Sbjct: 99 KMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTRY 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA+G+ G YTTARD+A+L+ IK +FP+Y HYF ++G+ K Y N N VG F G Sbjct: 159 INANGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKDYANFNMLVGRFDG 218 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTGF CASGFN V+SA++ +S+I V+LGA R SA LL MG + + Sbjct: 219 ADGMKTGFICASGFNQVSSAVRNGRSVITVVLGADSLAGRTDQSADLLQMGLTAPSGQ-- 276 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 + + EV ++S E+C + + E++D+ + Sbjct: 277 -GVSLASLAPYGDTAEVNDVSAEICNPKAAKVR-----SESRDETGRMV 319 >gi|150397770|ref|YP_001328237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150029285|gb|ABR61402.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 376 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 169/267 (63%), Gaps = 4/267 (1%) Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 W PASLTKLMTAY+ F +K + L +P+ ++KNA+ PPS +K G MTLD+ALK+ Sbjct: 57 WYPASLTKLMTAYITFRAIKADQLTLESPVVMTKNAASEPPSKMFYKPGQKMTLDSALKM 116 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++VKSAND+AVAIAE++ TE+ F++ MN ++ +G++++ F+N HG+ G YTTARD+ Sbjct: 117 MLVKSANDVAVAIAETVGGTEQAFIERMNAEARRIGMTSSRFINPHGLPGEGQYTTARDL 176 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A+L+ +K +FPQY YF ++G K YPN N +G F GADGMKTGF CASGFN V+ Sbjct: 177 AVLAVTLKREFPQYASYFALEGFTTGKKDYPNYNMLIGRFEGADGMKTGFICASGFNQVS 236 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-KTDRKKINYIIKDFYQQNLSNEV 289 SA++ + +++V+LG R SA LL TD+ + I Y ++ V Sbjct: 237 SAVRSGRRVVSVVLGEDSLGARADESARLLQKALTTVATDKPSLAEIPP--YGES-REVV 293 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDK 316 ++S E+C+ Q + + + + K Sbjct: 294 ADVSREICSKQAAKVRSEGRDEAGRQK 320 >gi|227823262|ref|YP_002827234.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] gi|227342263|gb|ACP26481.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] Length = 372 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 112/266 (42%), Positives = 166/266 (62%), Gaps = 2/266 (0%) Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 W PASLTKLMTAY F +K + L +P+ ++KNA+ PPS +K G MTLD+ALK+ Sbjct: 56 WYPASLTKLMTAYTTFQAIKAGQLTLESPVVMTKNAASEPPSKMFYKPGQAMTLDSALKM 115 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++VKSAND+AVAIAE++ +E+ F+ MN ++ +G++++HF+NA+G+ G YTTARD+ Sbjct: 116 MLVKSANDVAVAIAETVSGSEQAFIDRMNAEARRIGMTSSHFINANGLPGQGQYTTARDL 175 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A+L+ +K +FPQY YF ++G K Y N N +G F GADGMKTGF CASGFN V+ Sbjct: 176 AVLAITLKREFPQYASYFSLEGFTTGKKDYANYNMLIGRFEGADGMKTGFICASGFNQVS 235 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 SA + +S+++V+LG R SA LL M K I + + V Sbjct: 236 SATRAGRSVVSVVLGEDSLGARADESARLLQMALTTSAAEKPSLTAIAPYGESR--EVVA 293 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDK 316 ++S+E+C+ Q + + + + K Sbjct: 294 DVSKEICSKQAAKVRSEGRDEAGRQK 319 >gi|327188719|gb|EGE55918.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 366 Score = 235 bits (599), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 9/307 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F V A L+++ S+A+ N + L+D TG V+ W PASLTKLMT Sbjct: 5 RFTVAATAAFLASV----SLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTV 57 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA Sbjct: 58 YTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVA 117 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFP Sbjct: 118 VAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFP 177 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 QY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V Sbjct: 178 QYAGYFSLEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSV 237 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 +LG R +A+LL GF + +K + Q ++V +I+ ++C+ + Sbjct: 238 VLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICSAKGA 295 Query: 303 IINYNTQ 309 I T+ Sbjct: 296 KIRSETR 302 >gi|15966442|ref|NP_386795.1| putative penicillin-binding protein [Sinorhizobium meliloti 1021] gi|307300521|ref|ZP_07580301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307318386|ref|ZP_07597821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15075713|emb|CAC47268.1| Putative penicillin-binding protein [Sinorhizobium meliloti 1021] gi|306896068|gb|EFN26819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306904687|gb|EFN35271.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 360 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 171/267 (64%), Gaps = 4/267 (1%) Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 W PASLTKLMTAY F ++ + L +P+ ++KNA+ PPS +K G MTLD+ALK+ Sbjct: 41 WYPASLTKLMTAYTTFRAIQAGQLTLQSPVVMTKNAASEPPSKMFYKPGQKMTLDSALKM 100 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +++KSAND+AVAIAE++ +E+ F++ MN ++ +G++++HF+N +G+ G YTTARD+ Sbjct: 101 MLIKSANDVAVAIAETVGGSEQAFIEKMNAEARRIGMTSSHFINPNGLPGQGQYTTARDL 160 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A+L+ +K +FPQY YF ++G K YPN N +G F GADGMKTGF CASGFN V+ Sbjct: 161 AVLAVTLKREFPQYASYFALEGFTTGKKDYPNYNMLIGRFDGADGMKTGFICASGFNQVS 220 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-KTDRKKINYIIKDFYQQNLSNEV 289 SA +G + +++V+LG R SA LL M F T + + I+ Y + V Sbjct: 221 SASRGGRRVVSVVLGEDSLAARADESARLLQMAFTTVSTGKPSLAEIVP--YGET-RGVV 277 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDK 316 +IS+E+C+ Q + + + + K Sbjct: 278 ADISKEICSKQAAKVRSEGRDEAGRQK 304 >gi|190893669|ref|YP_001980211.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190698948|gb|ACE93033.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 366 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 9/307 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F V A L+++ S+A+ N + L+D TG V+ W PASLTKLMT Sbjct: 5 RFSVAATAAFLASV----SLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTV 57 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA Sbjct: 58 YTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVA 117 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFP Sbjct: 118 VAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFP 177 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 QY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V Sbjct: 178 QYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSV 237 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 +LG R +A+LL GF + +K + Q ++V +I+ ++C+ + Sbjct: 238 VLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICSAKGA 295 Query: 303 IINYNTQ 309 I T+ Sbjct: 296 KIRSETR 302 >gi|163759954|ref|ZP_02167038.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43] gi|162282912|gb|EDQ33199.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43] Length = 371 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/283 (41%), Positives = 175/283 (61%), Gaps = 11/283 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D +G VIA W PASLTK+MTAYV FS +K + + TP+T+S +A++ PPS Sbjct: 8 VDVGSGRVIAHEDAFQRWYPASLTKIMTAYVAFSAVKSGQMSMDTPVTMSIHAAKEPPSK 67 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 FK G LD+ALK L+VKSAND+AVAIAE++ +E+ FV+ MN T+K LG+ AT F+ Sbjct: 68 MYFKPGERFPLDSALKYLMVKSANDVAVAIAEAVSGSEEAFVREMNATAKALGMQATRFV 127 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 N +G+ G YTTARDMA+L+ + +FP+Y YF +G + + + N N +G F GA Sbjct: 128 NPNGLPGSGQYTTARDMAVLAAAARRNFPEYAQYFGYEGFSVGKQVHTNYNLLIGRFQGA 187 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 DGMKTGF CASGFN V+SA + +++++V+LGA + R + SA+LL + Sbjct: 188 DGMKTGFICASGFNQVSSATRNGRTVVSVVLGAPSQTARAERSAALLQAALTSSGSVSPS 247 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 + + + + V +IS ++C+++ + A+DK Sbjct: 248 LASLAPYGEGR--DAVADISAQICSSEA---------RAARDK 279 >gi|218675296|ref|ZP_03524965.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56] Length = 370 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 180/299 (60%), Gaps = 5/299 (1%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +S+++ N + L+D TG V+ W PASLTKLMT Y VF ++ + L TP Sbjct: 22 VSLSQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTP 78 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 I +SK A+ P + FK G +TLD+ALK+L+VKSAND++VA+AE++ T++ FV MN Sbjct: 79 IVMSKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSANDVSVAVAEAIGGTQEGFVTRMN 138 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + Sbjct: 139 GEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTTGQQN 198 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG R +A+L Sbjct: 199 VPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANL 258 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 L GF + +K + Q ++V +I+ ++C+ + I T+ + + K S Sbjct: 259 LQKGFTTQFPGNDTLGSLKAYEQGQ--DQVTDITADICSAKGAKIRSETRDEVGRMKVS 315 >gi|86359415|ref|YP_471307.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86283517|gb|ABC92580.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 360 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 176/302 (58%), Gaps = 13/302 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L++ TG V+ W PASLTKLMT Y VF ++ + L TPI ISK A+ P Sbjct: 20 HILVEVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTPIVISKRAAAQP 79 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV MN + LG++ + Sbjct: 80 AAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGTQEGFVTRMNGEALKLGMTDS 139 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + PN N +G F Sbjct: 140 HFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTTGQQNVPNLNMLIGRF 199 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADGMKTGF CASGFN + SA + ++L++V+LG R +A+LL GF + Sbjct: 200 AGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPG 259 Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK-----------DKESH 319 +K + ++V +I+ ++C+ + I T+ + + D + H Sbjct: 260 SDTLGSLKPYGPGQ--DQVTDITADICSAKGAKIRSETRDEVGRMKVHSPYILEMDHDPH 317 Query: 320 FI 321 F+ Sbjct: 318 FV 319 >gi|241206582|ref|YP_002977678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860472|gb|ACS58139.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 377 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 182/304 (59%), Gaps = 8/304 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 S+A+ N + L+D TG V+ W PASLTKLMT Y VF ++ + L TP Sbjct: 29 FSLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTP 85 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 I +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV MN Sbjct: 86 IVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAIGGTQEGFVTRMN 145 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + Sbjct: 146 GEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSLEGFTNGQQN 205 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 P+ N +G F GADGMKTGF CASGFN + SA + ++L++V+LG R +A+L Sbjct: 206 VPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANL 265 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLS-NEVPNISEEVCTTQKEIINYNTQMKEAKDK-E 317 L GF T + N + + ++V +IS ++C+ + + T+ + + K + Sbjct: 266 LQKGF---TTQPASNDTLGSLRPYGVGQDQVTDISADICSAKGAKVRSETRDEVGRMKVQ 322 Query: 318 SHFI 321 S +I Sbjct: 323 SPYI 326 >gi|116254096|ref|YP_769934.1| penicillin-binding protein precursor [Rhizobium leguminosarum bv. viciae 3841] gi|115258744|emb|CAK09850.1| putative penicillin-binding protein precursor [Rhizobium leguminosarum bv. viciae 3841] Length = 377 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 174/291 (59%), Gaps = 7/291 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + +A+ N + L+D TG V+ W PASLTKLMT Y VF ++ + L TP Sbjct: 29 VPLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTP 85 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + ISK A+ P + FK G +TLD+ALK+L+VKSAND+AVA+AE++ T++ FV MN Sbjct: 86 VVISKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSANDVAVAVAEAIGGTQEGFVTRMN 145 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + Sbjct: 146 GEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSLEGFTNGQQN 205 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG R +A+L Sbjct: 206 VPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANL 265 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLS-NEVPNISEEVCTTQKEIINYNTQ 309 L GF T + N + + ++V +I ++C+ + + T+ Sbjct: 266 LQKGF---TTQPASNDTLGSLRPYGVGQDQVTDIGADICSAKGAKVRSETR 313 >gi|209551182|ref|YP_002283099.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536938|gb|ACI56873.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 377 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/279 (40%), Positives = 171/279 (61%), Gaps = 2/279 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ W PASLTKLMT Y VF ++ + L TP+ +SK A+ P Sbjct: 37 HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTPVVMSKRAAAQP 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV MN + LG++ + Sbjct: 97 AAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAIGGTQEGFVTRMNGEALKLGMTDS 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + P+ N +G F Sbjct: 157 HFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTNGQQNVPSLNMLIGRF 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADGMKTGF CASGFN + SA + +++++V+LG R +A+LL GF + Sbjct: 217 AGADGMKTGFICASGFNQIGSATRNGRTIVSVVLGTDSLAARADATANLLQKGFTTQFPG 276 Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 + ++ + Q ++V +IS ++C+ + I T+ Sbjct: 277 NETLGSLRPYGQGQ--DQVTDISADICSAKGAKIRSETR 313 >gi|319409433|emb|CBI83082.1| Penicillin-binding protein [Bartonella schoenbuchensis R1] Length = 357 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 126/324 (38%), Positives = 196/324 (60%), Gaps = 15/324 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 MRQ L + ++ + LS+ T L Y + +D TG ++ N W PASLTKL Sbjct: 1 MRQLLYSLCLSFI------LSMTSTLALAYPFISVDAATGRILQHNQAFERWYPASLTKL 54 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT YV+F + + ITISKNAS+ PS+S ++ GS +TL+ AL + +VKSAND+ Sbjct: 55 MTTYVIFRAMSTGEISPQKHITISKNASQASPSHSGYEAGSILTLETALSITLVKSANDL 114 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+A++E++ +++ FVQ MN ++ LG+ THF NA G+ +YTTARD+A+L+ +I+ Sbjct: 115 AIALSEAVSGSQEAFVQQMNVQAQRLGMFGTHFANASGLPHPDNYTTARDIALLAVQIRR 174 Query: 180 DFPQYMHYFQIKGLEI-KGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +FPQY HYF I ++ G+K N+N + F G DGMKTGFTCASGFN+VASA + + Sbjct: 175 EFPQYAHYFSIPAIDFGDGRKIKFNSNNLINRFYGTDGMKTGFTCASGFNLVASATRNKR 234 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 ++IAV+LG N R +A LL GF + + +K + + ++ ++ E++C Sbjct: 235 TIIAVVLGLDTINAREGKAAQLLETGFSLQGSAQSTLATLKPYGTK--MTQITDMEEQIC 292 Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321 E++ ++++ DKE + I Sbjct: 293 --DPEVV--KKRIEDTFDKEGNVI 312 >gi|121602162|ref|YP_988381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella bacilliformis KC583] gi|120614339|gb|ABM44940.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella bacilliformis KC583] Length = 362 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 182/299 (60%), Gaps = 16/299 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FLV+ M+ L+ PF+S+ D G ++ N W PASLTKLM AY Sbjct: 11 FLVLSMMSRLALAHPFISV------------DLANGRILEHNQAFERWYPASLTKLMMAY 58 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +VF + + T ITISK A++ PP S++K G T+TLD AL + +VKSAND+A+AI Sbjct: 59 IVFRAMSTGEISPNTSITISKAAAQAPPHRSSYKTGYTITLDAALSITLVKSANDLAIAI 118 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +E++ ++K FV+ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ +FPQ Sbjct: 119 SEAIAGSQKAFVKQMNAHAQRLGMFGTHFANASGLPDLNNYSTARDIALLAVQIRREFPQ 178 Query: 184 YMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 Y HYF I ++ K N+N +G F G DGMKTGF CASGFNIVASA + ++++IA Sbjct: 179 YTHYFSIPAIDFGDNQKIQYNSNKLIGRFDGIDGMKTGFICASGFNIVASATRNNRTIIA 238 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 VILGA + + R +A LL GF K ++ + + ++ ++ +++CT + Sbjct: 239 VILGAENIDEREAKAAELLHEGFTKKGSPTSTLATLEPYGTK--ITQITDMRQQICTPE 295 >gi|319404878|emb|CBI78479.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 368 Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 122/312 (39%), Positives = 188/312 (60%), Gaps = 16/312 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F ++ M+ LS PF+S+ D TG ++ N W PASLTKLM Y Sbjct: 11 FFILSIMSSLSLAHPFISV------------DATTGRILKHNQAFERWYPASLTKLMMTY 58 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F + K ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A+AI Sbjct: 59 IIFRAMSTGKISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAI 118 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARDMA+L+ +I+ +FPQ Sbjct: 119 SEAISGSQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRREFPQ 178 Query: 184 YMHYFQIKGLEI-KGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 Y HYF I ++ GKK N+N +G F G DGMKTGF CASGFN+VASA + +++I Sbjct: 179 YTHYFSIPAIDFGNGKKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIV 238 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 VILG+ N R + +A LL+ GF +K + ++ Y +S ++ ++ +++CT + Sbjct: 239 VILGSESINKREEKAAQLLNAGFSDKGSPQSTLATLEP-YGTKIS-QITDMRQQICTPEA 296 Query: 302 EIINYNTQMKEA 313 + N+ +E Sbjct: 297 IKMRLNSYDEEG 308 >gi|163869341|ref|YP_001610597.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161019044|emb|CAK02602.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 363 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/285 (41%), Positives = 182/285 (63%), Gaps = 7/285 (2%) Query: 20 LSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 LS++ T L P+ ++ D T H++ N W PASLTKLMTAYV+F + + Sbjct: 14 LSLSSTFSLAQPFISV-DVTTEHILKHNQAFERWYPASLTKLMTAYVIFRAMSRGEISPN 72 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 PITIS+ A++ P S +K GS +TLD AL + +VKS ND+A+A++E++ ++K FV+ Sbjct: 73 KPITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAIAGSQKDFVRK 132 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ +FPQY HYF I ++ Sbjct: 133 MNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRREFPQYAHYFSIPAIDFGN 192 Query: 198 KK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N+N +G F G DGMKTGF CASGFN+VASA + +++IAVILGA + + R + Sbjct: 193 NRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRTIIAVILGANNVSEREEK 252 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 +A LL +GF ++ + +K Y N++ + N+ ++ CT + Sbjct: 253 AAQLLEIGFLHQGSPQLTLATLKP-YGSNIT-QANNMRQQTCTPE 295 >gi|319899483|ref|YP_004159580.1| penicillin-binding protein [Bartonella clarridgeiae 73] gi|319403451|emb|CBI77022.1| penicillin-binding protein [Bartonella clarridgeiae 73] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/251 (46%), Positives = 165/251 (65%), Gaps = 3/251 (1%) Query: 20 LSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 LSI + L + + +D TG ++ N W PASLTKLMTAYV+F + K Sbjct: 14 LSITSSLTLAHPFISVDATTGRILKHNQAFERWYPASLTKLMTAYVIFRAMSTGKISSHK 73 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A+AI+E++ +++ FVQ M Sbjct: 74 HITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISGSQEAFVQQM 133 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KG 197 N ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ +FPQY HYF I ++ G Sbjct: 134 NAEAQRLGMFGTNFTNTSGLPDPNNYSTARDIALLAVQIRREFPQYAHYFSIPAIDFGNG 193 Query: 198 KKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 KK N+N +G F G DGMKTGF CASGFN+VASA + +++IAVILG+ N R + + Sbjct: 194 KKIQFNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSDSVNKREEKA 253 Query: 257 ASLLSMGFYNK 267 A LL GF +K Sbjct: 254 AQLLDEGFSDK 264 >gi|256045637|ref|ZP_05448515.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256112362|ref|ZP_05453283.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256263050|ref|ZP_05465582.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|260562941|ref|ZP_05833427.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|265992060|ref|ZP_06104617.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265993797|ref|ZP_06106354.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|260152957|gb|EEW88049.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|262764778|gb|EEZ10699.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263003126|gb|EEZ15419.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263092926|gb|EEZ17101.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|326410032|gb|ADZ67097.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] gi|326539748|gb|ADZ87963.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 371 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++L+A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTLLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 329 Query: 328 L 328 + Sbjct: 330 V 330 >gi|17986319|ref|NP_538953.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|225853470|ref|YP_002733703.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|17981904|gb|AAL51217.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|225641835|gb|ACO01749.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] Length = 370 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 30 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 89 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 90 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 149 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 150 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++L+A++LGA + TR +A +++ F ++ Sbjct: 210 GADGMKTGFVCASGFNLAGSATRNGRTLLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 270 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 328 Query: 328 L 328 + Sbjct: 329 V 329 >gi|49474795|ref|YP_032837.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49240299|emb|CAF26780.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 365 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/310 (38%), Positives = 192/310 (61%), Gaps = 9/310 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQ L + ++ + N+ + +A+ P+ ++ D TG ++ N W PASLTKLM Sbjct: 1 MRQLLYNLFLSFILNLTSTIVLAQ----PFISV-DVTTGRILEHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + K ITIS+ A++ P +S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSIGKISSNKHITISEYAAKAPTYHSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FVQ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAVAGSQKAFVQQMNAEAQRLGMFGTHFTNASGLPDPHNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K+ PN+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILG+ + R + +A LL GF ++ + ++ + + + + ++ ++ CT Sbjct: 236 IIAVILGSNTISEREEKAAQLLERGFLHQGSLQSTLATLEPYGTKMI--QASDMRQQTCT 293 Query: 299 TQKEIINYNT 308 + ++ N+ Sbjct: 294 PEAMKMHANS 303 >gi|319781232|ref|YP_004140708.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167120|gb|ADV10658.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 387 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 150/232 (64%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D +G ++ W PASL+KLMTAYV F + + L +PI ++K+++ PPS Sbjct: 31 VFDLGSGKILQHQDAFKRWYPASLSKLMTAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK GS M LDNALK+++VKSANDIA+A+ E++ ++ F MN + LG++ THF Sbjct: 91 KMGFKPGSVMRLDNALKMMLVKSANDIAMAVGENVGGSQAAFADRMNAEATRLGMNGTHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ YTTARD+A+L I+ +FPQY+ +F I+GL + K PN N +G + G Sbjct: 151 VNPNGLYSPDQYTTARDLAVLVMAIRREFPQYVPWFSIEGLAVGKKAIPNYNLLIGRYPG 210 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C SGFN++ SA + ++L+AV+LG TR + +A LL GF Sbjct: 211 ADGMKTGFVCPSGFNMIGSATRNGRTLVAVVLGEKSAVTRAETAAKLLDQGF 262 >gi|254713557|ref|ZP_05175368.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1] gi|254716088|ref|ZP_05177899.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1] gi|261217856|ref|ZP_05932137.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261321294|ref|ZP_05960491.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|260922945|gb|EEX89513.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261293984|gb|EEX97480.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] Length = 371 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 329 Query: 328 L 328 + Sbjct: 330 V 330 >gi|23502884|ref|NP_699011.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|62290881|ref|YP_222674.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82700793|ref|YP_415367.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|237816389|ref|ZP_04595382.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254690170|ref|ZP_05153424.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254694661|ref|ZP_05156489.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|254700670|ref|ZP_05162498.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254731203|ref|ZP_05189781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256060003|ref|ZP_05450185.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33] gi|256258424|ref|ZP_05463960.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256370435|ref|YP_003107946.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260546143|ref|ZP_05821883.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260567492|ref|ZP_05837962.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260755709|ref|ZP_05868057.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260758934|ref|ZP_05871282.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260760656|ref|ZP_05872999.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260884736|ref|ZP_05896350.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261214985|ref|ZP_05929266.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261323978|ref|ZP_05963175.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261751178|ref|ZP_05994887.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261755741|ref|ZP_05999450.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|294851267|ref|ZP_06791940.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|297247266|ref|ZP_06930984.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|306842839|ref|ZP_07475479.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] gi|23348913|gb|AAN30926.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|62197013|gb|AAX75313.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616894|emb|CAJ11993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|237788456|gb|EEP62671.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|256000598|gb|ACU48997.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260096250|gb|EEW80126.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260157010|gb|EEW92090.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260669252|gb|EEX56192.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260671088|gb|EEX57909.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260675817|gb|EEX62638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260874264|gb|EEX81333.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260916592|gb|EEX83453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261299958|gb|EEY03455.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261740931|gb|EEY28857.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261745494|gb|EEY33420.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|294819856|gb|EFG36855.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|297174435|gb|EFH33782.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|306287033|gb|EFM58544.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] Length = 371 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 329 Query: 328 L 328 + Sbjct: 330 V 330 >gi|161619952|ref|YP_001593839.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|189025096|ref|YP_001935864.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|254696286|ref|ZP_05158114.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254705040|ref|ZP_05166868.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 3 str. 686] gi|161336763|gb|ABX63068.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|189020668|gb|ACD73390.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] Length = 370 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 30 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 89 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 90 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 149 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 150 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 210 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 270 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 328 Query: 328 L 328 + Sbjct: 329 V 329 >gi|306843463|ref|ZP_07476064.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] gi|306276154|gb|EFM57854.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] Length = 370 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 30 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 89 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 90 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 149 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 150 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGRYD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 210 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 270 PTLATLRPAETANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 328 Query: 328 L 328 + Sbjct: 329 V 329 >gi|254718081|ref|ZP_05179892.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13] gi|265983032|ref|ZP_06095767.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|264661624|gb|EEZ31885.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] Length = 371 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 271 PTLATLRPTQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 329 Query: 328 L 328 + Sbjct: 330 V 330 >gi|306839705|ref|ZP_07472507.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] gi|306405165|gb|EFM61442.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] Length = 370 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 30 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 89 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 90 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 149 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 150 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 210 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 270 PTLATLRPTQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 328 Query: 328 L 328 + Sbjct: 329 V 329 >gi|240851366|ref|YP_002972769.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240268489|gb|ACS52077.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 363 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 189/302 (62%), Gaps = 9/302 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ + +++ ++F +++A+ P+ ++ D TGH++ N W PASLTKLM Sbjct: 1 MQRLFYNLFFSVILSLFSAIALAQ----PFISV-DVTTGHILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + + ITIS+ A++ P S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSRGEISPNKHITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FV+ MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAVAGSQKNFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILGA + R + +A LL GF ++ R ++ Y +N++ + N+ ++ CT Sbjct: 236 IITVILGANNITEREEKAAQLLETGFLHQ-GRPQLTLATLKPYGRNIT-QANNMRQQTCT 293 Query: 299 TQ 300 + Sbjct: 294 PE 295 >gi|260461659|ref|ZP_05809906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259032729|gb|EEW33993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 387 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 150/232 (64%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D +G ++ W PASL+KLMTAYV F + + L +PI ++K+++ PPS Sbjct: 31 VFDLKSGQILQHQDAFKRWYPASLSKLMTAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK GS M LDNALK+++VKSANDIA+A+ E++ ++ F + MN + LG++ THF Sbjct: 91 KMGFKPGSVMRLDNALKMMLVKSANDIAMAVGENIGGSQAAFAERMNAEAVRLGMNGTHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ YTTARD+A+L I+ +FPQY +F I+GL + K PN N +G + G Sbjct: 151 VNPNGLYSPDQYTTARDLAVLVMAIRREFPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPG 210 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C SGFN++ SA + ++L+AV+LG +R + +A LL GF Sbjct: 211 ADGMKTGFVCPSGFNMIGSATRNGRTLVAVVLGEKSAVSRAEAAARLLDQGF 262 >gi|13473090|ref|NP_104657.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14023838|dbj|BAB50443.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 389 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 161/269 (59%), Gaps = 3/269 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D G ++ W PASL+KLMTAYV F + + L +PI ++K+++ PPS Sbjct: 31 VFDLKNGQILQHQDAFKRWYPASLSKLMTAYVTFRAIAAGEVQLDSPIKVTKHSAGEPPS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK GS M LDNALK+++VKSANDIA+A+ E++ ++ F + MN + LG++ THF Sbjct: 91 KMGFKPGSVMRLDNALKMMLVKSANDIAMAVGENVGGSQAAFAERMNAEAARLGMNGTHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ YTTARD+++L I+ +FPQY +F I+GL + K PN N +G + G Sbjct: 151 VNPNGLYSPDQYTTARDLSVLVMAIRREFPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPG 210 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTGF C SGFN++ SA + ++L+AV+LG +R + +A LL GF T Sbjct: 211 ADGMKTGFVCPSGFNMIGSATRNGRTLVAVVLGEKSAVSRAEAAAKLLDQGFDTPTAGSA 270 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQK 301 + + N+ + +E+C +K Sbjct: 271 TVATLAPYGDTVSPND---MHDEICKKKK 296 >gi|148559912|ref|YP_001259847.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|148371169|gb|ABQ61148.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] Length = 352 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 182/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 12 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 71 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 72 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 131 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 132 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 191 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 192 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 251 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 + NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 252 PTLATLHPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 310 Query: 328 L 328 + Sbjct: 311 V 311 >gi|319407837|emb|CBI81490.1| penicillin-binding protein [Bartonella sp. 1-1C] Length = 360 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/282 (40%), Positives = 176/282 (62%), Gaps = 4/282 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +DT TG ++ N W PASLTKLM Y++F + K ITISKNA++ P + Sbjct: 29 VDTTTGRILKHNQAFERWYPASLTKLMMTYIIFRAMSTGKISPYKHITISKNAAQAPAIH 88 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 S +K GS +TLD ALK+ +VKS ND+A+AI+E++ +++ FV+ MN ++ LG+ T+F Sbjct: 89 SGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISGSQEAFVKQMNAEARRLGMFGTNFT 148 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N G+ +Y+TARDMA+L+ +I+ +FPQY HYF I ++ GKK N N +G F Sbjct: 149 NTSGLPNPNNYSTARDMALLAVQIRREFPQYTHYFSIPAIDFGNGKKIQSNLNNLIGRFD 208 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DGMKTGF CASGFN+VASA + +++I VILG+ N R + +A LL GF +K Sbjct: 209 GIDGMKTGFICASGFNLVASATRNKRTIIVVILGSESINKREEKAAQLLDAGFLDK-GSP 267 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 ++ + Y +S ++ ++ +++CT + + N+ +E Sbjct: 268 QLTLATLEPYGTKIS-QITDMKQQICTPEAIKMRLNSYDEEG 308 >gi|222149991|ref|YP_002550948.1| penicillin-binding protein [Agrobacterium vitis S4] gi|221736973|gb|ACM37936.1| penicillin-binding protein [Agrobacterium vitis S4] Length = 366 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/270 (41%), Positives = 174/270 (64%), Gaps = 5/270 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ V+ W PASLTKLMTAY F L+ + L + +T+S A+ PS Sbjct: 31 VVDVNSLTVLEHQDSFKKWYPASLTKLMTAYTTFRALRAGEVRLDSVVTLSAFAASQAPS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK GS MTLD+ALK+++VKSANDIAVA+AE++ ++ FV MN + LG++++HF Sbjct: 91 KMFFKPGSKMTLDDALKMMLVKSANDIAVAVAENVGGSQAAFVARMNAEAARLGMTSSHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G Y+TARD+A+L+ I+ +FP+Y YF+I+ ++ K YPN N VG F G Sbjct: 151 VNPNGLPAPGQYSTARDLAVLAVTIRREFPEYAGYFKIEAIDTGKKVYPNVNMLVGRFDG 210 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK- 271 DGMKTG+ CASGFN + SA + ++LI V++GA R +SA+LL ++++ + + Sbjct: 211 VDGMKTGYICASGFNQITSATRNGRTLITVVMGADSLAARADISANLLQK-YFDRPNAQG 269 Query: 272 -KINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 +++ + D + N V ++S E+C+T+ Sbjct: 270 SRLSALGPD--SVDGLNAVNDVSAEMCSTE 297 >gi|163844056|ref|YP_001628460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|163674779|gb|ABY38890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] Length = 370 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 30 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 89 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 90 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 149 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQ+ HYF + ++ GKK N N +G + Sbjct: 150 NPNGLHDPNNYTTARDLAVLAVQLRREFPQHAHYFATEAIDPGAGKKVEANYNILLGRYD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 210 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E + K + H +D + I Sbjct: 270 PTLATLRPAQTANL-NQAVDMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDPIA 328 Query: 328 L 328 + Sbjct: 329 V 329 >gi|254709015|ref|ZP_05170826.1| cobalamin synthesis protein P47K [Brucella pinnipedialis B2/94] gi|256030540|ref|ZP_05444154.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] gi|256158532|ref|ZP_05456426.1| cobalamin synthesis protein P47K [Brucella ceti M490/95/1] gi|265987587|ref|ZP_06100144.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] gi|264659784|gb|EEZ30045.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] Length = 635 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 170/269 (63%), Gaps = 3/269 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 ++ NL N+ ++ + +C+ Q Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAICSEQ 298 >gi|49476281|ref|YP_034322.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49239089|emb|CAF28392.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 368 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/233 (45%), Positives = 155/233 (66%), Gaps = 2/233 (0%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ N W PASLTKLMTAYV+F + + ITIS+ A++ P Sbjct: 29 VDVKTGRILEHNQAFERWYPASLTKLMTAYVIFRAMSRGEISSNKHITISEYAAKAPTYR 88 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 S +K GS +TLD AL + +VKS ND+A+A++E++ ++K FV+ MN ++ LG+ THF Sbjct: 89 SGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAGSQKAFVKKMNAEAQRLGMFGTHFA 148 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFL 211 NA G+ +Y+TARD+A+L+ +I+ +FPQY HYF I ++ K+ PN+N +G F Sbjct: 149 NASGLPDPNNYSTARDIALLAIQIRREFPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFD 208 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DGMKTGF CASGFN+VASA + +++IAVILG+ + + R K +A LL GF Sbjct: 209 GIDGMKTGFICASGFNLVASATRNKRTIIAVILGSKNISEREKKAAKLLETGF 261 >gi|256253946|ref|ZP_05459482.1| cobalamin synthesis protein P47K [Brucella ceti B1/94] Length = 630 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/269 (40%), Positives = 170/269 (63%), Gaps = 3/269 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 26 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 85 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 86 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 145 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 146 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 205 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 206 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 265 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 ++ NL N+ ++ + +C+ Q Sbjct: 266 PTLATLRPAQTANL-NQAVDMRKAICSEQ 293 >gi|254707442|ref|ZP_05169270.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261314930|ref|ZP_05954127.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261303956|gb|EEY07453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] Length = 295 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/266 (40%), Positives = 168/266 (63%), Gaps = 3/266 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVC 297 ++ NL N+ ++ + +C Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAIC 295 >gi|225626417|ref|ZP_03784456.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo] gi|260169446|ref|ZP_05756257.1| cobalamin synthesis protein P47K [Brucella sp. F5/99] gi|225618074|gb|EEH15117.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo] Length = 635 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/269 (40%), Positives = 169/269 (62%), Gaps = 3/269 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PPS Sbjct: 31 VDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +HF Sbjct: 91 MGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+ + +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHDPNNYTTARDLAVFAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 211 GADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSSGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 ++ NL N+ ++ + +C+ Q Sbjct: 271 PTLATLRPAQTANL-NQAVDMRKAICSEQ 298 >gi|217977547|ref|YP_002361694.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502923|gb|ACK50332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 536 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 166/278 (59%), Gaps = 6/278 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E++ PW PASLTKLMT YV +++ + L TP+ +S+ A+ PPS Sbjct: 49 LMDLASGAVLYEDHATQPWFPASLTKLMTVYVALQAVRDHRISLDTPLVVSRRAAAMPPS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G+ +TLD ALK+L+VKSAND++V +AE + + + F MN T+ LG+ +HF Sbjct: 109 KMGFRPGTMVTLDTALKILMVKSANDVSVTVAEGVSGSVEAFAAEMNATAAALGMQQSHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ HY++ARD+A+L+ + FP++ F I LEI G+ N N +G + G Sbjct: 169 VNPNGLPDPQHYSSARDLALLARALYVTFPEHADLFSIGALEIGGRVMANHNNLLGRYPG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DGMKTGFTCA+GFN+VASA QG + L+AVILGA + R +A+L GF DR Sbjct: 229 VDGMKTGFTCAAGFNVVASATQGGRKLVAVILGAPNVALRTVKAAALFDRGFAG-IDRPS 287 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQ-KEIINYNTQ 309 I P+ VC ++ ++ +N + Sbjct: 288 IQVAALPLQ----GGAPPDNGASVCRSRGAAMVAFNAE 321 >gi|319406361|emb|CBI80002.1| penicillin-binding protein [Bartonella sp. AR 15-3] Length = 367 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 187/302 (61%), Gaps = 9/302 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQ + + + ++ L++A P+ ++ D TG ++ N W PASLTKLM Sbjct: 1 MRQLFHTLFFSFILSMIGSLTLAH----PFISV-DATTGRILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 YV+F + + ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A Sbjct: 56 MTYVIFRAMSTGEISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAISEAISGSQEAFVKQMNAEAQRLGMFGTNFTNTSGLPNPNNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ G+K N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYTHYFSIPAIDFGNGQKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILG+ N R + +A LL+ GF +K + ++ Y +S ++ ++ +++CT Sbjct: 236 IIVVILGSDSINKREEKAAELLNAGFSDKGSPQSTLATLEP-YGTKIS-QITDMRQQICT 293 Query: 299 TQ 300 + Sbjct: 294 PE 295 >gi|299132249|ref|ZP_07025444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298592386|gb|EFI52586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 475 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 165/273 (60%), Gaps = 2/273 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+ PW PASLTK+MTAYV + +K+ + L T +T+S NA Sbjct: 24 YLLIDANSGKVLQAENATQPWYPASLTKIMTAYVTLTAVKQGRISLDTLLTVSPNAVAQA 83 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS F G+T+T+DNALK+++VKSAND+AV +AE + + + F MN T++ LG++ + Sbjct: 84 PSKMGFPAGTTVTVDNALKMMMVKSANDMAVVLAEGVGGSIEGFAGMMNETARQLGMTQS 143 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N +G+ H ++ARD+ IL+ D P+Y ++ + G++ + N N +G + Sbjct: 144 HFVNPNGLPDDAHISSARDIGILARAFYRDLPEYEYFAHLPGIKFGRRVTMNFNKLIGRY 203 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADGMKTGF CASGFN+VASA + D+ LIAV+LGA R +A LL GF N + Sbjct: 204 PGADGMKTGFICASGFNLVASATRNDKHLIAVVLGAPSSAQRTIKAAQLLEKGF-NHSKL 262 Query: 271 KKINYIIKDFYQ-QNLSNEVPNISEEVCTTQKE 302 + + Q + PN+ ++VC ++ Sbjct: 263 AWLKPSLGTVEQLPPIDAAPPNLRDQVCGPHRK 295 >gi|83308700|emb|CAJ01610.1| conserved hypothetical protein [Methylocapsa acidiphila] Length = 540 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 109/272 (40%), Positives = 160/272 (58%), Gaps = 4/272 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +G V+ E++ PW PASLTKLMT YV ++E + L TP+ +S A+ PPS Sbjct: 22 VVEYPSGAVLYEDHATQPWYPASLTKLMTVYVALKAVREHRLTLDTPLAVSARAASMPPS 81 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G+ +TL NA+K+L+VKSAND+AV IAE + + + F MN + +LGL +HF Sbjct: 82 KMGFRPGTLVTLGNAMKMLMVKSANDLAVTIAEGISGSVEAFADEMNEAAASLGLRQSHF 141 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ H ++ARD A+L+ + + FP+ F I L + G N N +G + G Sbjct: 142 VNPNGLPNPQHISSARDFAVLAIALYSTFPEQADLFSIGALRLGGDIITNHNNLLGRYPG 201 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DGMKTGFTCA+GFN+VASA QG + LIAVILGA + R +A+L GF DR Sbjct: 202 VDGMKTGFTCAAGFNVVASATQGGRKLIAVILGAPNVAQRTIKAAALFDRGFSG-VDR-P 259 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 + N PN + VC + +++ Sbjct: 260 TGSVTALAGPTNAPPPDPN--QNVCRKRGKLV 289 >gi|209886488|ref|YP_002290345.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] gi|209874684|gb|ACI94480.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] Length = 492 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 7/302 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R +L+ IA A+ +++ + AE Y L+D ++G V+ PW PASLTK+MT Sbjct: 13 RIWLIAIAAALSLSLWARPAQAEA-----YLLIDASSGKVLQATNATQPWYPASLTKIMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYV S +K+ + L T +T+S NA PS F G+ +T+DNALK+++VKSAND+AV Sbjct: 68 AYVTLSAVKQGRINLDTLLTVSPNALSQAPSKMGFPAGTQVTVDNALKMMMVKSANDMAV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + F MN T++ LG++ TH++N +G+ ++ARD+ ILS D Sbjct: 128 VLAEGVGGSVDGFSALMNETARQLGMTQTHYVNPNGLPDDRQISSARDLGILSRAFYRDL 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +Y + G++ + N N +G + GADG+KTGF CASGFN+VASA + D+ LIA Sbjct: 188 PEYQYYAHLPGIKFGRRITHNFNKLIGRYPGADGLKTGFICASGFNLVASATRNDRHLIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV-PNISEEVCTTQ 300 V+LGA R +A LL GF N + + + Q + + PN+ ++VC Sbjct: 248 VVLGASSSAQRTVKAAQLLEKGF-NGSKLAWLKPSLGTVEQLPPVDALPPNLRDQVCGPH 306 Query: 301 KE 302 ++ Sbjct: 307 RK 308 >gi|239833080|ref|ZP_04681409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239825347|gb|EEQ96915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 389 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 177/285 (62%), Gaps = 3/285 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V A+ W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PPS Sbjct: 49 VDVATGKVYAQQDAFQRWYPASLTKMMTAYVAFRALQSGQMTLESPVRMTVNAAKEPPSK 108 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD+ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +HF Sbjct: 109 MGYKPGSVMTLDSALKIMLVKSANDVAVAVAEAVGGTESAFVQRMNAEAQRIGMVGSHFA 168 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 169 NPNGLHDPQNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGRYD 228 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F Sbjct: 229 GADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRASAGGG 288 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 ++ NL N+ ++ + +C+ + ++ + E K K Sbjct: 289 ATLATLRPTGGGNL-NQATDMRKAICSQEAMADRWDGRDVEGKLK 332 >gi|153008237|ref|YP_001369452.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151560125|gb|ABS13623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 371 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 182/301 (60%), Gaps = 7/301 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PPS Sbjct: 31 VDVATGKVYQQQEAFQRWYPASLTKMMTAYVAFRALQSGQMTLDSPVRMTVNAAKEPPSK 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K GS MTLD ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +HF Sbjct: 91 MGYKPGSVMTLDTALKIMLVKSANDVAVAVAEAVGGTESGFVQRMNAEAQRIGMVGSHFA 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-PNTNWAVGTFL 211 N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G + Sbjct: 151 NPNGLHNPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGRYD 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F Sbjct: 211 GADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRANASGG 270 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEKIT 327 ++ NL N+ ++ + +C+ Q ++ + E K K + H +D + + Sbjct: 271 ATLATLRPAAGGNL-NQAVDMRKAICSQQAMADRWDGRDVEGKLKINSPYIHAMDRDPVP 329 Query: 328 L 328 + Sbjct: 330 V 330 >gi|92119190|ref|YP_578919.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91802084|gb|ABE64459.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 455 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++A ++ I P + T + L++ +TG V+ +PW PASLTK+MTAYV Sbjct: 23 IVLAAGLIVAIAPLRAAHATEA---HLLIEADTGKVLEAENATYPWYPASLTKMMTAYVT 79 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + +K+ + L T T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE Sbjct: 80 LTAVKQGRITLDTLFTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMLVKSANDMAVVLAE 139 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + F MN T++ LG++ T ++N +G+ G T+ARD+ IL+ I D P+Y Sbjct: 140 GVGGSIDGFSAEMNATAQRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIHDLPEYE 199 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ +I + + N N +G F GADG KTGF CASG+N+V SA Q + LIAV+LG Sbjct: 200 YFMRIPSIRYGRRVTRNFNKLIGRFPGADGFKTGFICASGYNLVGSATQNGKRLIAVVLG 259 Query: 246 ALDRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 A R A +L GF N T R + + K ++ PN+ +E+C +++ Sbjct: 260 ASSGTMRAVRVAQMLERGFANNTLSWLRPALGTVDK---LAPIAAAPPNLRDEMCGPKRK 316 >gi|323139480|ref|ZP_08074528.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis sp. ATCC 49242] gi|322395282|gb|EFX97835.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis sp. ATCC 49242] Length = 530 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 144/232 (62%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ ++ W PASLTKLMTAYV ++ + + TP+ +S A PS Sbjct: 33 VIDVASGQVLEQDQATASWYPASLTKLMTAYVALDAVRAGRISMDTPLMMSPRACRMAPS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ GS +TL NAL +L+VKSANDIAVAIAE + + + F MN S NLG++ + + Sbjct: 93 KMGFRAGSEVTLHNALIMLMVKSANDIAVAIAEGVSGSVEAFADEMNRASANLGMTQSQW 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ T+ARD+AIL + FP+Y + F I ++I G+ +P N +G + G Sbjct: 153 VNPNGLPDSRQVTSARDLAILGRALYLQFPEYAYLFNIGAMQIGGRVHPTHNGLLGRYPG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGFTC +GFN+VASA G Q LIAV+LGA R +A+LL F Sbjct: 213 ADGMKTGFTCPAGFNLVASATHGGQRLIAVVLGAPSAAARTAKAAALLDRAF 264 >gi|154245869|ref|YP_001416827.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154159954|gb|ABS67170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 508 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 147/234 (62%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG VI + PW+PAS+TKLMT YV + +K + L TP+T+S A+ PS Sbjct: 51 LVEADTGRVIEQKEAGRPWHPASVTKLMTVYVALNAVKNGRLTLDTPLTVSAAAASQQPS 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNA+K+++VKSAND+A + E + + FV MN T+ +LG+S THF Sbjct: 111 KMGFKPGTVVTLDNAMKMVLVKSANDMAWVVGEGVAGSMPAFVAEMNATAAHLGMSGTHF 170 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ TTARD+AIL+ I FP++ F+I ++I N N + + G Sbjct: 171 ENPNGLPDPDQITTARDLAILARAIIYHFPEHEALFRIPAIKIGKAVLRNYNRLIDRYPG 230 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADGMKTGF C SG+N+VA+A +G++ LIAVILGA R + +A + GF + Sbjct: 231 ADGMKTGFVCGSGYNLVATATRGNKRLIAVILGARSGTARTEQAALMFEKGFQS 284 >gi|192293106|ref|YP_001993711.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192286855|gb|ACF03236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 483 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 14/304 (4%) Query: 4 FLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 FL I+ A+LS + P ++ AE L++ +TG V+ + +PW+PAS+TKLMT Sbjct: 14 FLTIVVAALLSLTVLPRVANAEA-----LLLIEADTGKVLQADNATYPWHPASVTKLMTL 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV +K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV Sbjct: 69 YVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVV 128 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + + F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D P Sbjct: 129 LAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLP 188 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV Sbjct: 189 EYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAV 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN----LSNEVPNISEEVCT 298 +LGA R +A LL GF T + ++ + ++ P++ +E+C Sbjct: 249 VLGANSGQDRAVKAAQLLERGFSTNT----LAWLTPSLGTVDNLAPIAAAPPDLRDEMCG 304 Query: 299 TQKE 302 +++ Sbjct: 305 PKRK 308 >gi|39937326|ref|NP_949602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39651184|emb|CAE29707.1| possible D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhodopseudomonas palustris CGA009] Length = 484 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 14/304 (4%) Query: 4 FLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 FL I+ A+LS + P ++ AE L++ +TG V+ + +PW+PAS+TKLMT Sbjct: 14 FLTIVVAALLSLTVLPRVANAEA-----LLLIEADTGKVLQADNATYPWHPASVTKLMTL 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV +K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV Sbjct: 69 YVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVV 128 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + + F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D P Sbjct: 129 LAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLP 188 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV Sbjct: 189 EYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAV 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN----LSNEVPNISEEVCT 298 +LGA R +A LL GF T + ++ + ++ P++ +E+C Sbjct: 249 VLGANSGQDRAVKAAQLLERGFSTNT----LAWLTPSLGTVDNLAPIAAAPPDLRDEMCG 304 Query: 299 TQKE 302 +++ Sbjct: 305 PKRK 308 >gi|182677354|ref|YP_001831500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633237|gb|ACB94011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 538 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 146/234 (62%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G+VI ++ PW PASLTKLMT YV +++ + TP+ +S A PPS Sbjct: 68 VIDLASGNVIYQSEATRPWYPASLTKLMTLYVALQAVRDHRIGFDTPLVVSARAHAMPPS 127 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TL NALK+L+VKSANDIA+ +AE + + + F + MN + +LGL +HF Sbjct: 128 KMGFKPGTQVTLGNALKMLMVKSANDIAITVAEGIAGSVEAFAEDMNAQAADLGLRQSHF 187 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ HY++ARDMA+L+ + FPQY + I L + + N N +G + G Sbjct: 188 VNPNGLHNEQHYSSARDMALLARALYLRFPQYASLYNIGALRLGNQIIQNHNNLLGRYPG 247 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG+TC +GFNIVASA Q + +I V+LG+ + TR +A+L F N Sbjct: 248 VDGMKTGYTCTAGFNIVASAEQSGRRVIVVVLGSPNVETRTIKAAALFDRAFSN 301 >gi|126739529|ref|ZP_01755221.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. SK209-2-6] gi|126719175|gb|EBA15885.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. SK209-2-6] Length = 493 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 106/258 (41%), Positives = 147/258 (56%), Gaps = 2/258 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + LD TG V+ D +PASLTK+MT Y+ F ++ + L T + ISKNA+ Sbjct: 4 PYAAMVLDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIRNGEISLDTKVRISKNAA 63 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + L ++ VKSAND A AI E+L +E F + M T+K LG+ Sbjct: 64 AEPPSKLGLRSGQRIALRYLIRAAAVKSANDAATAIGEALSGSEAAFARRMTRTAKALGM 123 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NAHG+ + GH +TARDM L I D+P+Y + F K + K PNTN Sbjct: 124 SRTSFKNAHGLTESGHMSTARDMTTLGRHILYDYPEYYNLFSRKTADAGVKTVPNTNRRL 183 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A LL +GF Sbjct: 184 LAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSTSRNAKVAELLDLGFRR 243 Query: 267 KTDRKKINYIIKDFYQQN 284 R K+ + YQ N Sbjct: 244 APSRAKLRKPGRPAYQGN 261 >gi|158422626|ref|YP_001523918.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans ORS 571] gi|158329515|dbj|BAF87000.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans ORS 571] Length = 512 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/242 (42%), Positives = 153/242 (63%), Gaps = 1/242 (0%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A N P L++ +TG V+ + PW PAS+TKLMT YV + +KE + + +T+ Sbjct: 73 ASVNAAPVL-LVEADTGRVLEQQDAGKPWYPASVTKLMTVYVALNAVKEGRISFDSLLTV 131 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ PS FK G+ +TL+NAL++L+VKSAND+AV IAE + + FV+ MN+T+ Sbjct: 132 SPLAASQQPSKMGFKPGTQLTLENALRMLMVKSANDMAVVIAEGVGGSMPAFVEEMNDTA 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ TH+ N +G+ G TTARD+A+L+ + FP+ F+I + + Y N Sbjct: 192 ERLGMAGTHYNNPNGLPDPGQITTARDLAVLARALIYHFPEQETLFRIPAMRLGKVVYRN 251 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + + GADGMKTGF C++GFN+VA+A +G++ LIAVILGA R + +A LL Sbjct: 252 YNRLIDRYPGADGMKTGFICSAGFNLVATATRGNKRLIAVILGAPSAVARTEQAAMLLEK 311 Query: 263 GF 264 GF Sbjct: 312 GF 313 >gi|86748470|ref|YP_484966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86571498|gb|ABD06055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 499 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 161/274 (58%), Gaps = 8/274 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ +PW PAS+TK+MTAYV +KE + L + +T+S A+ PS Sbjct: 38 LVEADTGKVLQAENATYPWYPASVTKIMTAYVTLKAVKEGRLTLDSLLTVSPVAAAQSPS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F G+ +T+DNALK+++VKSANDIAV +AE + + F MN T++ LG++ TH+ Sbjct: 98 KMGFAPGTLITVDNALKMMMVKSANDIAVVLAEGVGGSVDGFSDMMNTTAQRLGMTQTHY 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G T+ARD+AIL+ + D P+Y H+ I + + N N +G + G Sbjct: 158 VNPNGLPAEGQVTSARDLAILARAVLRDLPEYEHFMHIPAIRFGKRVTHNFNKLIGRYPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADG KTGF CASG+N+VASA + + LIAV+LGA R +A LL GF T Sbjct: 218 ADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGQDRAVKAAQLLERGFSANT---- 273 Query: 273 INYIIKDFYQQN----LSNEVPNISEEVCTTQKE 302 + ++ + + PN+ +E+C +++ Sbjct: 274 LAWLTPSLGTVDNLAPIDATPPNLRDEMCGPKRK 307 >gi|144901274|emb|CAM78138.1| Predicted peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Magnetospirillum gryphiswaldense MSR-1] Length = 425 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/265 (40%), Positives = 152/265 (57%), Gaps = 7/265 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ ++ P +PASLTK+MT YV F L E K L +T+S+ A+ S Sbjct: 52 VVDATSGAVLEQDQAGQPRHPASLTKMMTLYVAFQALSEGKTSLNATLTVSERAAGQGGS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ L +ALK L+V+SAND AVAIAE + TE F Q M ++ LG++AT F Sbjct: 112 VLGLKTGKTIALADALKSLVVRSANDAAVAIAEHVAGTEDSFAQRMTEQARRLGMTATSF 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ GH TTARDMA+L+ +K DFPQ+ F + + P N V ++ G Sbjct: 172 RNATGLTAPGHLTTARDMAVLAMALKRDFPQHWPLFATTSMRWGSSQLPTVNGFVTSYPG 231 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 A+G+KTGFTC +G+N+ A+A + +S IAVI+GA + R ++ SLL+ F Sbjct: 232 AEGLKTGFTCPAGYNLAAAASRNGRSAIAVIMGAAAKEQRLALTTSLLNKAFAAPAQGNL 291 Query: 273 INYIIKDFYQQNLSNEVPNISEEVC 297 I NL P++S +VC Sbjct: 292 TQLI-------NLGQIAPDLSAQVC 309 >gi|118591400|ref|ZP_01548798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM 12614] gi|118436072|gb|EAV42715.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM 12614] Length = 457 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/244 (41%), Positives = 150/244 (61%), Gaps = 7/244 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VI E W PASLTKLMTAYV F ++E +A L + + SKN++ P Sbjct: 15 YVLIDASSGAVIEEENATRKWYPASLTKLMTAYVTFKAIREGRASLDSAVVQSKNSAAEP 74 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS FK G+ T+D ALK++++KSAND+AVA+ E++ +E F+ MN ++ LG++ T Sbjct: 75 PSKMGFKVGTRFTVDTALKIILIKSANDVAVALGEAIGGSEAGFIAMMNVEAQRLGMTNT 134 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F N HG+ + TTARD+AIL+ ++ DFP+ +++ G+ K + N F Sbjct: 135 RFYNPHGLPDNRQVTTARDLAILALALRRDFPEARNFYDHPGIRFGKKTLRSANR---EF 191 Query: 211 L----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 L GA+GMKTG+ C SG+N+ ASA +G+++LIA+ILGA R + L GF Sbjct: 192 LLRVPGANGMKTGYICNSGYNVAASATRGNKTLIAIILGAGSGLERTAFARQLFDEGFRK 251 Query: 267 KTDR 270 + R Sbjct: 252 RGGR 255 >gi|75676866|ref|YP_319287.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74421736|gb|ABA05935.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 455 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++A L + P ++ T + L++ +TG V+ PW PAS+TKLMTAYV Sbjct: 16 IVLAAVALVTLAPSRTVHATEA---HLLIEADTGKVLEAENATFPWYPASVTKLMTAYVT 72 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + +K+K+ L T +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE Sbjct: 73 LTAVKQKRLTLDTLLTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMMVKSANDMAVVLAE 132 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + F MN ++ LG++ + ++N +G+ G ++ARDMAIL+ D P+Y Sbjct: 133 GVGGSIDGFSAEMNAAAQRLGMTQSSYVNPNGLPADGQISSARDMAILARAFIHDLPEYE 192 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ I + + N N +G F GADG KTGF CASG+N+VASA Q + LIAV+LG Sbjct: 193 YFVHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLG 252 Query: 246 ALDRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 A R +A +L GF N + R + + + ++ PN+ +E+C ++ Sbjct: 253 ASSGTMRAVRAAQMLERGFANNSLSWLRPALGTVDR---LAPIAATPPNLRDEMCGPKRR 309 >gi|90420271|ref|ZP_01228179.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90335605|gb|EAS49355.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 455 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 165/275 (60%), Gaps = 3/275 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+++ + PAS TKLMTAY+ L+E + L +P+ +++ ++ PS Sbjct: 30 VVDVATGKVLSQQHATERRYPASTTKLMTAYLALRALRESRLSLDSPVIVTRRSAAEAPS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK GS + LD AL++++VKSANDIA AI E++ + ++FV MN+ + LG+ T F Sbjct: 90 KMGFKPGSVIRLDFALRMMLVKSANDIAYAIGETVGGSMEEFVAMMNDAAAQLGMQDTRF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA+G+ G +++A+D+AIL I+ +FP + YF + + N N +G F G Sbjct: 150 INANGLPGEGQHSSAKDLAILGVAIRREFPAFADYFGTEAISNGTAILKNGNKLLGRFDG 209 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTG+ CASGFN+V+SA + ++L+AV++GA R ++SA +L GF TD Sbjct: 210 ADGMKTGYICASGFNLVSSATRNGRTLVAVVIGANGTIPRERLSAEILEAGF--ATDPAS 267 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307 ++ + + + E ++S+ +C+ + N Sbjct: 268 VDIRVDELPVAS-DTEPLDVSDYICSAEGRTARAN 301 >gi|146343356|ref|YP_001208404.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146196162|emb|CAL80189.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] Length = 476 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 179/313 (57%), Gaps = 7/313 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L IIA+A + P ++ AE L++ +TG V+ +PW PAS+TKLMTAYV Sbjct: 13 LKIIAVAAALMLAPRMAHAEA-----LLLVEADTGKVLEAQNATYPWYPASVTKLMTAYV 67 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K+ KA L T +T+S A+ PS ++ G+ +T+DNALK+++VKSAND+AV +A Sbjct: 68 TLKAVKDGKASLDTLLTVSPTAASQSPSKMGYRPGTQVTVDNALKMMLVKSANDMAVVLA 127 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + F MN T++ LG++ T ++N +G+ G T+ARD+AIL+ I D P+Y Sbjct: 128 EGIGGSIDGFSIMMNETAQRLGMTQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEY 187 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 ++ I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+L Sbjct: 188 EYFVHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVL 247 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ-QNLSNEVPNISEEVCTTQKEI 303 GA R + +L GF N + + + Q + PN+ +++C+ ++ Sbjct: 248 GASSGQMRAVRAIQMLDRGF-NTNQLSWLKAPLGNVEQLVPVDATPPNLRDDMCSGRRHR 306 Query: 304 INYNTQMKEAKDK 316 + +EA ++ Sbjct: 307 PASDDDGEEASNE 319 >gi|316935787|ref|YP_004110769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315603501|gb|ADU46036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 483 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 173/304 (56%), Gaps = 14/304 (4%) Query: 4 FLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 FL I+A A+LS + P + AE L++ +TG V+ + +PW+PASLTKLMT Sbjct: 14 FLAIVAAALLSLTVLPRAASAEA-----LLLIEADTGKVLQADNATYPWHPASLTKLMTM 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV +K+ + + +T+S A+ PS F G+ +T+DNALK+++VKSAND+AV Sbjct: 69 YVTLQAVKQGRLTQDSLLTVSPIAAAQSPSKMGFGPGTQITVDNALKMMMVKSANDMAVV 128 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + + F MN+T+ LG++ T ++N +G+ T+ARD AIL+ + D P Sbjct: 129 LAEGVGGSVDGFSAMMNDTAARLGMTQTRYVNPNGLPADEQVTSARDQAILARAVIRDLP 188 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV Sbjct: 189 EYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAV 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN----LSNEVPNISEEVCT 298 +LGA R +A LL GF T + ++ + ++ P++ +E+C Sbjct: 249 VLGANSGQDRAVKAAQLLERGFSTNT----LAWLTPSLGTVDNLAPIAATPPDLRDEMCG 304 Query: 299 TQKE 302 +++ Sbjct: 305 PKRK 308 >gi|90425548|ref|YP_533918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90107562|gb|ABD89599.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 476 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 161/274 (58%), Gaps = 8/274 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ +PW PAS+TKLMTAYV +KE + L T +T+S A+ PS Sbjct: 30 LIEADTGKVLQAENATYPWYPASVTKLMTAYVTLKAIKEGRITLDTLLTVSPTAASQSPS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+ ++ LG++ T + Sbjct: 90 KMGFRAGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNDNAQRLGMTQTSY 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G T+ARD+ IL+ I D P+Y ++ I + + N N +G + G Sbjct: 150 VNPNGLPADGQITSARDLGILARAIIRDLPEYEYFVHIPSIRFGKRVTQNFNRLIGRYPG 209 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADG KTGF CASGFN+VASA + + LIAV+LGA R +A LL GF + Sbjct: 210 ADGFKTGFICASGFNLVASATRDGKRLIAVVLGAPSSQARALKAAQLLERGFSA----NQ 265 Query: 273 INYIIKDFYQ-QNLSN---EVPNISEEVCTTQKE 302 + ++ NL+ PN+ +E+C +++ Sbjct: 266 LTWLRPALGTVDNLAPIDAAPPNLRDEMCGPKRK 299 >gi|163740370|ref|ZP_02147764.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter gallaeciensis 2.10] gi|161386228|gb|EDQ10603.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter gallaeciensis 2.10] Length = 550 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 156/281 (55%), Gaps = 7/281 (2%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++I ++M++ P A PY + +D TG V+ D +PASLTK+MT Y+ Sbjct: 50 LVIFLSMVATAPPGAMAA-----PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 104 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI Sbjct: 105 AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 164 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y Sbjct: 165 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 224 Query: 185 MHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 225 YNLFSRRSADAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 284 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G +RN A LL +GF R K+ + YQ N Sbjct: 285 FGGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGN 325 >gi|300021591|ref|YP_003754202.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299523412|gb|ADJ21881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 360 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 146/232 (62%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + +TG V+ D W PASLTKL TAY+ F +K+ K LT I S A+ PPS Sbjct: 29 LFELSTGKVLYSEDIDDVWYPASLTKLTTAYLAFQAIKDGKLRLTDKIPCSLVATLQPPS 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T++ AL+ +IVKSAND+ V +AE++ +E F++ MN T++ LG++ THF Sbjct: 89 KAGLNVGDTLTVEQALQAVIVKSANDVTVMLAEAISGSETNFIEQMNATAQRLGMTRTHF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ G T+ARD+A ++ I TDFP+Y Y+ + + I ++ + N + TF G Sbjct: 149 DNTNGLPSPGQLTSARDLARIARAIVTDFPEYASYWSMPAMRIGKRRLGSHNALLKTFPG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGFTC SG+N+ ASA + + L+A++LG N R SA+LL GF Sbjct: 209 ADGMKTGFTCDSGYNVAASATRDGRRLVAIVLGESSGNERAVRSAALLEYGF 260 >gi|91975804|ref|YP_568463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91682260|gb|ABE38562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 492 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 172/301 (57%), Gaps = 13/301 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + IA ++ P L+ AE L++ +TG V+ +PW PAS+TK+MTAYV Sbjct: 16 IAIAATLMLMAAPRLASAEA-----LLLIEADTGKVLQAENATYPWYPASVTKIMTAYVT 70 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 +KE + L + +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE Sbjct: 71 LKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFRPGTQITVDNALKMMMVKSANDMAVVLAE 130 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + F MN T++ LG++ TH++N +G+ G T+ARD+ IL+ + D P+Y Sbjct: 131 GVGGSIDGFSATMNATAQRLGMTQTHYVNPNGLPADGQVTSARDLGILARAMIRDLPEYE 190 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LG Sbjct: 191 YFSHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLG 250 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ-QNLSN---EVPNISEEVCTTQK 301 A R +A LL GF T + ++ NL+ PN+ EE+C ++ Sbjct: 251 ANSGQDRAVKAAQLLERGFSANT----LAWLTPSLGTVDNLAPIDATPPNLREEMCGPKR 306 Query: 302 E 302 + Sbjct: 307 K 307 >gi|254472440|ref|ZP_05085840.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio sp. JE062] gi|211958723|gb|EEA93923.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio sp. JE062] Length = 447 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 108/270 (40%), Positives = 160/270 (59%), Gaps = 12/270 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +FL + A+A+ S LS A + + + L+D + G V+ N W PASLTK+MTA Sbjct: 13 RFLAVFAVALGS----LLSTARAD-IAAWLLMDADNGQVLEHNAAFDRWYPASLTKMMTA 67 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV F + ++ + +S+NA PPS FK G+T+TLDNALK+++VKSANDIAVA Sbjct: 68 YVAFQHISRGDMAMSDMVMVSQNALNQPPSKMGFKVGTTITLDNALKMILVKSANDIAVA 127 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + TE+ F+ MN ++ +G+ T+F+N HG+ + TTARDMAIL+ + FP Sbjct: 128 VAERVGGTEENFITMMNANARRMGMLHTNFVNPHGLPDNRQVTTARDMAILARELWNKFP 187 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQS 238 QY Y G+ + + + N FL GA+GMKTG+ C SGFN+ SA + ++ Sbjct: 188 QYRSYMSHPGIRFGRRTFRSGNR---DFLLRTAGANGMKTGYICNSGFNVATSATRNGRT 244 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +IA++LGA R+ + L+ GF T Sbjct: 245 VIAIVLGAASSLERSAFAKKLIDSGFKKTT 274 >gi|163737219|ref|ZP_02144637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] gi|161389823|gb|EDQ14174.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] Length = 529 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 156/281 (55%), Gaps = 7/281 (2%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++I ++M++ P A PY + +D TG V+ D +PASLTK+MT Y+ Sbjct: 29 LVIFLSMVATAPPGAMAA-----PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 83 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI Sbjct: 84 AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 143 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y Sbjct: 144 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 203 Query: 185 MHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 204 YNLFSRRSTDAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 263 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G +RN A LL +GF R K+ + YQ N Sbjct: 264 FGGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGN 304 >gi|254476532|ref|ZP_05089918.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11] gi|214030775|gb|EEB71610.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11] Length = 538 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/267 (38%), Positives = 150/267 (56%), Gaps = 4/267 (1%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG V+ D +PASLTK+MT Y+ F ++ + L T + IS+NA+ Sbjct: 47 PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTKVKISRNAA 106 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS K G + ++ +KSAND A AI E+L +E F + M T+K LG+ Sbjct: 107 AEPPSKLGLKAGQRIAFRYLIRAAAIKSANDAATAIGETLSGSEAAFARRMTRTAKALGM 166 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NAHG+ ++GH +TARDM L I D+P+Y + F K + + PNTN Sbjct: 167 SRTTFKNAHGLTENGHMSTARDMTTLGRHILYDYPEYYNLFSRKSADAGVRTVPNTNRRL 226 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A LL +GF Sbjct: 227 LAAYRGADGIKTGYTRAAGFNLVASAQRGNERVIATVFGGKSSTSRNAKVAELLDLGFRR 286 Query: 267 KTDRKKINYIIKDFYQQN--LSNEVPN 291 K+ + YQ N L +V N Sbjct: 287 APSHAKLRRPAQPPYQGNRGLGTQVAN 313 >gi|254464797|ref|ZP_05078208.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales bacterium Y4I] gi|206685705|gb|EDZ46187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales bacterium Y4I] Length = 555 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 156/282 (55%), Gaps = 2/282 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMT 61 +FL A +L+ + +L+ PY + +D TG V+ + D +PASLTK+MT Sbjct: 18 RFLWAAAGILLAVLGLWLAPQRAQAAPYAAMVIDARTGEVLHSSNADTRLHPASLTKMMT 77 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F ++ + L T + IS+NA+ PPS K G + ++ VKSAND A Sbjct: 78 LYIAFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKPGQRIAFRYLIRAAAVKSANDAAT 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E+L +E F + MN T+K LG++ T F NAHG+ GH +TA DM L + D+ Sbjct: 138 AIGETLSGSEAAFTRRMNRTAKALGMTRTTFKNAHGLTASGHLSTASDMTTLGRHLLYDY 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+Y + F + + ++ PNTN + + GADG+KTG+T A+GFN+VASA +GD+ +I Sbjct: 198 PEYYNLFSRRSTDAGIREVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAKRGDERII 257 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 A + G +RN A LL +GF R + + YQ Sbjct: 258 ATVFGGKSSTSRNAKVAELLDLGFRRAPSRAALRKPQRPAYQ 299 >gi|296447596|ref|ZP_06889517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296254911|gb|EFH02017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 448 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ + P W PASLTKLMT YV ++ + TP+ +S A+ PS Sbjct: 29 VIDVASGQILEQEQPTQSWYPASLTKLMTVYVALDAVRSGRLSYDTPLVVSPRATSMAPS 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F GS +TL NAL +L+VKSAND+AV IAE + + + F MN S LG+ +++ Sbjct: 89 KMGFPPGSEVTLRNALVMLMVKSANDVAVTIAEGVSGSVEAFADEMNRASARLGMRESYW 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ T+ARD+A+L + +FP+ ++ I ++ + +P N +G + G Sbjct: 149 VNPNGLPDDRQVTSARDLALLGRALLVEFPESAGFYNIGAMKFGSQIHPTHNGLLGRYPG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTGFTC +G+N+VASA G Q LIAV+LGA R +ASLL F + + Sbjct: 209 ADGMKTGFTCPAGYNLVASATHGGQKLIAVVLGAPSGAARTAKAASLLDKAFTSGSPAGA 268 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQ-KEIINYNTQMKEA------KDKESHFIDFEK 325 + + P++ + VC + K Y +++E ++ E+ +D + Sbjct: 269 LAALPSSGVAP-----APDMRDSVCHHRGKASAEYMAEVEEMTIAIPHENGETEAVDVKA 323 Query: 326 ITLLKN 331 I L Sbjct: 324 IAQLPR 329 >gi|85714340|ref|ZP_01045328.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85698787|gb|EAQ36656.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 499 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 160/274 (58%), Gaps = 6/274 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L++ +TG V+ PW PAS+TKLMTAYV + +K + L T +T+S A+ Sbjct: 69 HLLIEADTGKVLEAENATFPWYPASITKLMTAYVTLTAVKHGRITLDTLLTVSPTAAAQS 128 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN ++ LG++ T Sbjct: 129 PSKMGFRPGTRVTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAEMNAAAQRLGMTQT 188 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 ++N +G+ G ++ARD+AIL+ D P+Y ++ I + + N N +G F Sbjct: 189 SYVNPNGLPADGQISSARDIAILARAFIHDLPEYEYFVHIPSIRYGRRVTHNFNKLIGRF 248 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-- 268 GADG KTGF CASG+N+VASA Q + LIAV+LGA R +A +L GF N T Sbjct: 249 PGADGFKTGFICASGYNLVASATQNGKRLIAVVLGASSGTMRAVRAAQMLERGFANNTLS 308 Query: 269 -DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 R + + + ++ PN+ +E+C ++ Sbjct: 309 WLRPALGTVDR---LAPIAAAPPNLRDEMCGPKR 339 >gi|218508407|ref|ZP_03506285.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil 5] Length = 312 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 145/234 (61%), Gaps = 2/234 (0%) Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV Sbjct: 6 LDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGTQEGFV 65 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G Sbjct: 66 TRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSLEGFTT 125 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG R Sbjct: 126 GQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADA 185 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 +A+LL G + +K + Q ++V +I+ ++C+ + I T+ Sbjct: 186 TANLLQKGLTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICSAKGAKIRSETR 237 >gi|148252530|ref|YP_001237115.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146404703|gb|ABQ33209.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] Length = 480 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 144/232 (62%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ +PW PAS+TKLMTAYV +KE K L T +T+S A+ PS Sbjct: 36 LVEADTGKVLEAQNATYPWYPASVTKLMTAYVTLKAVKEGKLSLDTLVTVSPTAAAQSPS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ G+ +T+DNALK+++VKSAND+AV +AE + + F MN T++ LG++ T + Sbjct: 96 KMGYRPGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNETAQKLGMTQTSY 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G T+ARD+AIL+ I D P+Y ++ I + + N N +G + G Sbjct: 156 VNPNGLPADGQITSARDLAILARAIIRDLPEYEYFVHIPSIRYGRRVVQNFNRLIGRYPG 215 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG KTGF CASG+N+VASA + + LIAV+LGA R + +L GF Sbjct: 216 ADGFKTGFICASGYNLVASATRNGKRLIAVVLGASSGQMRGVRAIQMLDRGF 267 >gi|298293245|ref|YP_003695184.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296929756|gb|ADH90565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 461 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 147/232 (63%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +G V+ + PW PAS+TKLMTAYV F +++ + T +T+S NA PS Sbjct: 38 VIEVESGKVLLADDATKPWYPASITKLMTAYVTFKAIRQGRLTPETLLTVSANAVAQKPS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +T+DNALK+++VKSAND+AV +AE + + FV MN+T+ LG++ +HF Sbjct: 98 KMGFKAGTQLTVDNALKMMLVKSANDMAVVLAEGVSGSLPAFVAEMNSTAAQLGMTGSHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +TARD+A+L+ I DFP+ F+I +++ + N + + G Sbjct: 158 ANPNGLPDPDNVSTARDLAVLARHIFLDFPEQADLFRIPAMKLGTAVIRSYNKLIDRYPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF CASGFN+VASA +G++ L+ V+LG R + +A LL GF Sbjct: 218 ADGMKTGFICASGFNLVASAKRGNRHLLVVVLGTQSGRARTEQAALLLERGF 269 >gi|220926507|ref|YP_002501809.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219951114|gb|ACL61506.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 490 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 138/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PPS Sbjct: 35 VVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISPEAASEPPS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND+A AIAE L + F MN T++ LG+ + + Sbjct: 95 KMGFKPGTQITLDNALKIIMVKSANDVAWAIAEGLAGSVDNFAVLMNETAQRLGMRDSRW 154 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ +T+ARDMAIL + DFP F I ++ PN N +G + G Sbjct: 155 VNPNGLPDPRQWTSARDMAILGRALLRDFPDNRDLFSISAIQFGRAVMPNHNGLLGRYAG 214 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF Sbjct: 215 VDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGF 266 >gi|84685216|ref|ZP_01013115.1| D-alanyl-D-alanine carboxypeptidase family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666948|gb|EAQ13419.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2654] Length = 534 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 1/253 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ E D +PASLTK+MT Y+VF ++ + L + +TIS+NAS PPS Sbjct: 19 VVDARSGQVLHERNADARLHPASLTKMMTLYIVFEAVEHGEISLDSLVTISRNASAEPPS 78 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F++GS + L + ++ VKSAND A A+ E++ +E+ F MN T+K LG++ THF Sbjct: 79 KIGFREGSQVRLRHLIRAAAVKSANDAATALGEAISGSEEAFAARMNRTAKALGMTRTHF 138 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 N HG+ GH +TARDM L + D+PQY + F ++ K P+TN + T+ Sbjct: 139 ENMHGLTAEGHLSTARDMTTLGRHLFYDYPQYYNLFSRTSADVGVKTVPSTNRRFLTTYE 198 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG+T ASG N+ ASA +G++ +IA I G +R+ A LL MGF + Sbjct: 199 GADGIKTGYTRASGSNLTASAHRGNKRIIATIFGGTSGPSRDAQMAELLDMGFRQAGNNV 258 Query: 272 KINYIIKDFYQQN 284 + K Y N Sbjct: 259 AVRPPSKPPYMGN 271 >gi|84500362|ref|ZP_00998611.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola batsensis HTCC2597] gi|84391315|gb|EAQ03647.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola batsensis HTCC2597] Length = 477 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++ E PY + +D +G V+ + D +PASLTK+MT Y+ F ++ + L TP Sbjct: 8 AMREAQAAPYAAMVMDARSGEVLHSSNADARLHPASLTKMMTLYIAFEAVRNGEITLDTP 67 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + IS+NA+ PPS GS + L ++ VKSAND A AI E++ +E +F + M Sbjct: 68 VRISRNAAAEPPSKLGLAAGSKIKLRYLIRASAVKSANDAATAIGEAIEGSEARFARRMT 127 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 T+K LG++ T F NAHG+ + GH +TARDM IL + D+P+Y + F KK Sbjct: 128 RTAKALGMTRTTFKNAHGLTESGHLSTARDMTILGRHLLFDYPEYYNLFSRVQTHAGIKK 187 Query: 200 YPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN +G++ GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A Sbjct: 188 VSNTNRRLLGSYRGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSASRNAKVAE 247 Query: 259 LLSMGF 264 LL +GF Sbjct: 248 LLDLGF 253 >gi|92112285|ref|YP_572213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] gi|91795375|gb|ABE57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] Length = 413 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 162/287 (56%), Gaps = 8/287 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LV+ A+A+ + LS+AE P Y ++DT G V+ + D P PASLTK+MT Sbjct: 17 LLVVFAIALCT-----LSVAEAAPNPRYASIVIDTENGAVLHADNADAPRYPASLTKMMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y++F +++ L + + +S+ A+ PPS G T+ +++A+ +LIVKSAND+A Sbjct: 72 LYLLFEAIEDDTLSLESRLPVSQYAAAKPPSKMGVTPGETVKVEDAINILIVKSANDVAA 131 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L +E F M + ++ LG+ T F NA G+ G TTARDMAIL+ R+ DF Sbjct: 132 VVAEGLAGSESVFAGQMTDKARALGMMDTTFRNASGLPDAGQVTTARDMAILALRLMQDF 191 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P Y YF +GK+Y N + ++ GADG+KTG+ ASGFN+ SA+ + +++ Sbjct: 192 PGYYPYFGKTQFTWQGKRYQGHNRLLDSYAGADGLKTGYIRASGFNVATSAVHDGRRILS 251 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSN 287 V++G +R+ LL GF + +++ + D Y + L + Sbjct: 252 VVMGGFTAQSRDAHMRELLDSGFARVASLAQGDWVAQADIYGERLQS 298 >gi|126733463|ref|ZP_01749210.1| Probable penicillin-binding protein [Roseobacter sp. CCS2] gi|126716329|gb|EBA13193.1| Probable penicillin-binding protein [Roseobacter sp. CCS2] Length = 464 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 4/248 (1%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG V+ D +PASLTK+MT YV F ++ + L TP+ IS+ A+ Sbjct: 7 PYAAMVMDARTGEVLHSRNADTQLHPASLTKMMTLYVAFQAIERGEITLDTPVRISRLAA 66 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G T+ L L+ VKSAND A AI E++ +E F MN T++ +G+ Sbjct: 67 SEPPSKLGLRSGQTIRLRFLLRAAAVKSANDAATAIGEAISGSEDAFATRMNRTARAMGM 126 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNW 205 T+F NAHG+ Q GH +TARDM++L + DFPQY + F + + + ++ N W Sbjct: 127 RNTNFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRSADAGVARVRHTNRRW 186 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + ++ G DG+KTG+T A+GFN+VASA +G + +IA + G + RN L+ MGF Sbjct: 187 -LDSYAGGDGIKTGYTRAAGFNLVASAQRGQERVIATVFGGSSTSARNARITELMDMGFN 245 Query: 266 NKTDRKKI 273 R I Sbjct: 246 RAPSRATI 253 >gi|307943474|ref|ZP_07658818.1| penicillin-binding protein [Roseibium sp. TrichSKD4] gi|307773104|gb|EFO32321.1| penicillin-binding protein [Roseibium sp. TrichSKD4] Length = 446 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 153/256 (59%), Gaps = 1/256 (0%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 FLS ++ + L+D +G V+ E W PASLTK+MTAYV +++++ +T+ Sbjct: 12 FLSSPTKAEIGAHILIDAKSGDVLYERQSTRKWYPASLTKIMTAYVTLKAVRDERITMTS 71 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 P+ SKN+ PPS FK G+ +T+D ALK++++KSAND+AVA+ E++ +E F+ M Sbjct: 72 PVVQSKNSISEPPSKMGFKVGTQLTVDAALKIIMIKSANDVAVALGEAVSGSEAAFIAEM 131 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T F+N HG+ + +TARDMA+L+ DFP+ ++ G++ K Sbjct: 132 NREAKRLGMRNTRFVNPHGLPDNAQVSTARDMALLARAFWYDFPEARQIYKYPGIKFGRK 191 Query: 199 KYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N + + GA+GMKTG+ C SG+N+ A+ + ++LIAV+LGA R ++ Sbjct: 192 PLRSANRFFLQRVPGANGMKTGYICNSGYNVAATVTRRGRTLIAVVLGARSGLERTALTR 251 Query: 258 SLLSMGFYNKTDRKKI 273 L+ GF + R + Sbjct: 252 ELMDKGFKKRGSRTNV 267 >gi|254511152|ref|ZP_05123219.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium KLH11] gi|221534863|gb|EEE37851.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium KLH11] Length = 448 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 153/292 (52%), Gaps = 6/292 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L +IA L P +A PY + +D TG V+ D +PASLTK+MT Y Sbjct: 3 LFLIAFLWLLVFAPLKGLAA----PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLY 58 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ + L TP+ I+K AS PPS + G T+ ++ VKSAND A AI Sbjct: 59 IAFEAVRNGEITLDTPVRITKKASSEPPSKLGLRTGQTIQFRYLIRAAAVKSANDAATAI 118 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 ++ +E F + M T+K +G+S T F NAHG+ + GH +TARDM L + D+PQ Sbjct: 119 GIAISGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTETGHLSTARDMTTLGRHLLYDYPQ 178 Query: 184 YMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + K PNTN + + GADG+KTG+T A+GFN+VASA + D+ +IA Sbjct: 179 YYNLFSRQSTHAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRKDERIIAT 238 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 + G +RN A LL MGF R I + Y N V ++ Sbjct: 239 VFGGKSGASRNARVAELLDMGFRRAPSRAPIRKPARPAYAGNAGLGVTQVAR 290 >gi|27376431|ref|NP_767960.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] gi|27349571|dbj|BAC46585.1| bll1320 [Bradyrhizobium japonicum USDA 110] Length = 487 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 161/274 (58%), Gaps = 8/274 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ + PW PAS+TK+MTAYV +K+ + L T +T+S A+ PS Sbjct: 38 LIEADSGKVLQADNATIPWYPASVTKIMTAYVTLKAVKDGRLTLDTLLTVSPTAASQSPS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+T+K LG++ T + Sbjct: 98 KMGFRPGTQLTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSVMMNDTAKKLGMTQTSY 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G T+ARD+ IL+ D P+Y ++ I + + N N +G + G Sbjct: 158 VNPNGLPADGQITSARDLGILARSFLRDLPEYEYFVHIPAIRFGKRVTGNFNKLIGRYPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADG KTGF CASG+N+VASA + + LIAV+LGA R +A LL GF + Sbjct: 218 ADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGTARAVKAAQLLERGF----SQDN 273 Query: 273 INYIIKDFYQ-QNL---SNEVPNISEEVCTTQKE 302 ++++ +NL PN+ +++C ++ Sbjct: 274 LSWLRPSLGTVENLVPVDASPPNLRDDMCGGHRK 307 >gi|188580422|ref|YP_001923867.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179343920|gb|ACB79332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 499 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PPS Sbjct: 32 VVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + + Sbjct: 92 KMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRW 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +T+ARDMAIL+ + DFP F I ++ N N +G + G Sbjct: 152 YNPNGLPEPRQWTSARDMAILARALMRDFPNQQALFSISAIQFGKSVMANHNGLLGRYPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C+ GFN+VA+A +G + +IAV++G R+ +A L GF Sbjct: 212 ADGMKTGFICSGGFNVVATATRGGRRIIAVVMGQPSARERDIKAADLFDYGF 263 >gi|254418835|ref|ZP_05032559.1| beta-lactamase, putative [Brevundimonas sp. BAL3] gi|196185012|gb|EDX79988.1| beta-lactamase, putative [Brevundimonas sp. BAL3] Length = 493 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 161/287 (56%), Gaps = 4/287 (1%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R ++A++++ +N+ P + ++ N ++D +G V+ + D PASLTK+ Sbjct: 7 RGLFAVLALSLVLGANVRPIEAQSQENSRYAAIVIDAASGEVLFSRHADSRRYPASLTKM 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F L + K +T+S+ A+ PPS G T+TLD+A++ V+SAND+ Sbjct: 67 MTLYLTFEALSQGKVHADDVLTVSQQAAAQPPSKLGLGAGQTITLDDAMRATAVRSANDM 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVAIAE + +E +F M ++ LG++ T + A+G+ T+ARD AIL+ I Sbjct: 127 AVAIAEHIGGSESRFATLMTAKAQQLGMTQTRYFTANGLPDARQTTSARDQAILARAIMR 186 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFPQY YF + G+ Y NTN + T G DGMKTG+T ASG+N+ ASA++ + L Sbjct: 187 DFPQYYKYFGLHDWAYNGRSYRNTNGLLPTGNGYDGMKTGYTNASGYNLAASAVRDGRRL 246 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQN 284 I V+LG +RN A L+ GF + R + I + F++Q Sbjct: 247 ITVVLGGRSSASRNAHVAELMDTGFEVERRRSQGENIQIAQAFFEQR 293 >gi|86139111|ref|ZP_01057682.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. MED193] gi|85824342|gb|EAQ44546.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. MED193] Length = 554 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/273 (37%), Positives = 148/273 (54%), Gaps = 7/273 (2%) Query: 19 FLSIA-----ETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 FL +A + PY ++ D TG V+ D +PASLTK+MT Y+ F ++ Sbjct: 32 FLGMALIPPTQAQAAPYAAVVVDARTGEVLHSRNADARLHPASLTKMMTLYIAFEAVRNG 91 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + L + ISKNA+ PPS K G + ++ VKSAND A AI E++ +E Sbjct: 92 EISLDQKVRISKNAAAEPPSKLGLKSGQRIAFRYLIRASAVKSANDAATAIGEAISGSEA 151 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + M T+K LG+S T F NAHG+ + GH +TARDM L I D+P+Y H F Sbjct: 152 AFARRMTRTAKALGMSRTTFKNAHGLTEAGHLSTARDMTKLGRHILYDYPEYYHLFSRTS 211 Query: 193 LEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 ++ K PNTN + ++ GADG+KTG+T A+G N+VASA +GD+ +IA + G + Sbjct: 212 IDAGVKTVPNTNRRLLASYKGADGIKTGYTRAAGSNLVASAKRGDERIIATVFGGKSSTS 271 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 RN LL +GF R ++ + Y N Sbjct: 272 RNARIVELLDLGFRRAPSRARVRAPGRPAYVGN 304 >gi|126725140|ref|ZP_01740983.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2150] gi|126706304|gb|EBA05394.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2150] Length = 452 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/266 (39%), Positives = 153/266 (57%), Gaps = 8/266 (3%) Query: 12 MLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 ML +F P +IA PY + +D +G V+ D +PASLTK+MT YV F Sbjct: 1 MLCALFLAPISAIAA----PYAAMVIDARSGEVLHSRNADSRLHPASLTKMMTLYVTFEA 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 +++ + L T + ISK A+ PPS + G + L ++ VKSAND A A+ E++ Sbjct: 57 IRKGEISLDTRVRISKKAAAEPPSKLGLQAGQRIQLRYLIRAASVKSANDAATALGEAVS 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E F + MN T+K LG+S T F NAHG+ + GH +TARDM L R+ D+PQY + F Sbjct: 117 GSEAAFARRMNRTAKALGMSRTTFKNAHGLTESGHLSTARDMTTLGRRLFFDYPQYYNLF 176 Query: 189 QIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + KK NTN + ++ G+DG+KTG+T A+GFN+VASA++G++ +IA + G Sbjct: 177 SRRTTDAGVKKVNNTNTRFLNSYRGSDGIKTGYTNAAGFNLVASAVRGNERIIATVFGGR 236 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKI 273 RN A LL +GF K+ Sbjct: 237 STANRNAKVAELLDLGFRRAPSTSKV 262 >gi|170744628|ref|YP_001773283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168198902|gb|ACA20849.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 506 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 138/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PPS Sbjct: 35 VVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISAEAAAEPPS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G+ +TLDNALK+++VKSAND+A AI E+L + F MN T++ LG+ +H+ Sbjct: 95 KMGFRPGTQLTLDNALKIIMVKSANDVAWAIGENLGGSIDNFAALMNETAQRLGMRDSHW 154 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ +T+ARDMAIL + DFP+ F I ++ N N +G + G Sbjct: 155 YNPNGLPDPRQWTSARDMAILGRALLRDFPENRDLFSISAIQFGRAVMANHNGLLGRYAG 214 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF Sbjct: 215 VDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGF 266 >gi|163850650|ref|YP_001638693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163662255|gb|ABY29622.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 501 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PPS Sbjct: 32 VVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + + Sbjct: 92 KMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRW 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +T+ARDMA+L+ + DFP + F I ++ N N +G + G Sbjct: 152 YNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLFSISAIQFGKSVMANHNGLLGRYPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C+ GFN+VA+A +G + +I V++G R+ +A L GF Sbjct: 212 ADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPSARERDIKAADLFDYGF 263 >gi|259417976|ref|ZP_05741895.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] gi|259346882|gb|EEW58696.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] Length = 559 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D +PASLTK+MT Y+ F ++ + L T IT+S+NA PPS Sbjct: 69 VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEISLDTEITVSRNAEAEPPS 128 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + L ++ VKSAND A AI E++ +E F + MN T+K LG++ T F Sbjct: 129 ELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTTF 188 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ +GH +TARDM IL + D+P+Y + F K K NTN + + Sbjct: 189 KNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRKSTNAGTKVVYNTNRRFLAAYR 248 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG+T A+GFN+V+SA +GD+ +IA + G RN A LL +GF Sbjct: 249 GADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGQSTAARNAKVAELLDLGF 301 >gi|240137704|ref|YP_002962175.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens AM1] gi|240007672|gb|ACS38898.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens AM1] Length = 501 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PPS Sbjct: 32 VVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + + Sbjct: 92 KMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRW 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +T+ARDMA+L+ + DFP + F I ++ N N +G + G Sbjct: 152 YNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLFSISAIQFGKSVMANHNGLLGRYPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C+ GFN+VA+A +G + +I V++G R+ +A L GF Sbjct: 212 ADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPSARERDIKAADLFDYGF 263 >gi|149916443|ref|ZP_01904962.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. AzwK-3b] gi|149809713|gb|EDM69567.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. AzwK-3b] Length = 482 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 162/278 (58%), Gaps = 6/278 (2%) Query: 16 IFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + P +IA PY + +D +G V+ + D +PASLTK+MT YVVF ++ + Sbjct: 24 VVPLSAIAA----PYAAMVMDARSGEVLHAHNADTRLHPASLTKMMTLYVVFEAVENGEI 79 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L T +TIS++A+ PPS + G + L + ++ +KSAND A A+AE++ +E +F Sbjct: 80 GLDTMVTISQHAASEPPSKLGLRAGQKIRLRHLIRAAAIKSANDAATALAEAIEGSEARF 139 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN T+K +G++ T F NAHG+ + GH +TARDM IL + D+P+Y + F + Sbjct: 140 ARRMNRTAKAMGMTRTTFKNAHGLTESGHLSTARDMTILGRHVFYDYPEYYNLFSRITAD 199 Query: 195 IKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +K +TN A + ++ GADG+KTG+T A+GFN+VASA +G + +IA + G +RN Sbjct: 200 AGVRKVYHTNRALLNSYRGADGIKTGYTRAAGFNLVASAERGGERIIATVFGGNSTASRN 259 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A LL +GF R ++ + Y + + P+ Sbjct: 260 AKVAELLDLGFRKAPSRVALHKPRRPAYAGRMQDSAPD 297 >gi|218529374|ref|YP_002420190.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218521677|gb|ACK82262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 496 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PPS Sbjct: 32 VVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + + Sbjct: 92 KMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRW 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +T+ARDMA+L+ + DFP + F I ++ N N +G + G Sbjct: 152 YNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLFSISAIQFGKSVMANHNGLLGRYPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C+ GFN+VA+A +G + +I V++G R+ +A L GF Sbjct: 212 ADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPSARERDIKAADLFDYGF 263 >gi|254560273|ref|YP_003067368.1| serine-type D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] gi|254267551|emb|CAX23393.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens DM4] Length = 501 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PPS Sbjct: 32 VVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + + Sbjct: 92 KMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRW 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ + +T+ARDMA+L+ + DFP + F I ++ N N +G + G Sbjct: 152 YNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLFSISAIQFGKSVMANHNGLLGRYPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADGMKTGF C+ GFN+VA+A +G + +I V++G R+ +A L GF Sbjct: 212 ADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPSARERDIKAADLFDYGF 263 >gi|295690183|ref|YP_003593876.1| serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC 21756] gi|295432086|gb|ADG11258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC 21756] Length = 433 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 15/308 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLS-IAETNKLPYYTL-----------LDTNTGHVIAENYPDH 49 R LV +A L+ +F L+ + +PY L +D N+G V+ + D Sbjct: 9 RSVLVAAGLA-LAGLFGALAPTPASAAIPYLQLNASEPKYAAIVIDANSGEVLYDKRADS 67 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 P PAS+TK+MT Y+ F L E + LT + +S A+ P+ + G +M++D A+K Sbjct: 68 PRYPASVTKVMTLYLTFEALSEGRMKLTDRVVMSPRAAAQAPTKIGLRPGDSMSVDEAIK 127 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + VKSAND+AVA+AE L +E +F M + LG+ + F+NA G+ +TARD Sbjct: 128 AMTVKSANDVAVAMAERLAGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARD 187 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +AILS I DFPQY YF I+G +G N + + G DG+KTG+T ASGFN+ Sbjct: 188 LAILSRAIMRDFPQYYSYFSIRGFTFRGNYVKGHNRLLDSMEGFDGLKTGYTNASGFNLA 247 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDFYQQNLSN 287 SA++ + LIAV+LG R+ LL GF + R + I + Y+ + S Sbjct: 248 GSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDVMKRRSRGERTTIAANIYEDDPSG 307 Query: 288 EVPNISEE 295 + S E Sbjct: 308 PIQRPSVE 315 >gi|254501213|ref|ZP_05113364.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222437284|gb|EEE43963.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 473 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/267 (37%), Positives = 154/267 (57%), Gaps = 10/267 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R L I+A A+ F ++ ++ Y L+D G V+ + W PASLTK+MT Sbjct: 9 RSALPILAAALG---FFLMAAPARAEIGTYILVDARNGAVVDQKNATRKWYPASLTKMMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYV F ++E + L + + SKN++ PPS FK G+ T+D ALK++++KSAND++V Sbjct: 66 AYVTFKAIREGRVALDSAVVQSKNSAAEPPSKMGFKVGTKFTIDTALKIILIKSANDVSV 125 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E++ +E F+ MN ++ LG++ T F N HG+ + TTARDMAIL+ ++ DF Sbjct: 126 ALGEAVSGSENAFLAEMNAEARRLGMTNTRFTNPHGLPDNRQVTTARDMAILAMALRKDF 185 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQ 237 P+ +++ G+ K + N FL GA+GMKTG+ C SGFN+ +S + + Sbjct: 186 PEAREFYKHPGIRFGKKTLRSANR---EFLLRVPGANGMKTGYICNSGFNVASSVTRRGR 242 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGF 264 +LIA+I+GA R + L GF Sbjct: 243 TLIAIIMGASSGLERTAFARQLFDEGF 269 >gi|328543443|ref|YP_004303552.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326413187|gb|ADZ70250.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 486 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 1/243 (0%) Query: 12 MLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 +L +F L SIA+ N ++D TG + D P PASLTK+MT YVVF L+ Sbjct: 18 LLIGLFASLPSIAQANAKYAGIVVDAKTGKTLYAASADEPRYPASLTKIMTLYVVFEELE 77 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 ++ L TP+ +S A+ PPS K GST+++ +A+ LI KSAND+AV +AE++ + Sbjct: 78 ARRLSLDTPLKVSAYAAGQPPSKIGLKPGSTISVKDAILALITKSANDVAVVVAENIGGS 137 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E +F + M T++ +G++ T F N HG+ G TTARDMA L I+ FP Y YF+ Sbjct: 138 EARFAERMTRTARQIGMTRTTFRNPHGLPNSGQRTTARDMAQLGRAIQERFPSYYGYFKT 197 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ Y N N +G G DG+KTGF ASGFN+V S + + ++AV++G Sbjct: 198 RSFAYRGRTYGNHNKLLGHVAGVDGIKTGFIRASGFNLVTSVNRDGRHVVAVVMGGQTGR 257 Query: 251 TRN 253 +R+ Sbjct: 258 SRD 260 >gi|304321612|ref|YP_003855255.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] gi|303300514|gb|ADM10113.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] Length = 423 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 134/227 (59%), Gaps = 2/227 (0%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++ +TG V+ + Y P PASLTK+MT Y++F ++E + TT + +SK A Sbjct: 30 PKYAAYIIHADTGDVLFDRYSTEPRYPASLTKMMTLYLLFEAIEEGRVSRTTDMKVSKRA 89 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S P S K G+T+ +D A++ L++KSAND+A AE L +E KF + M +++LG Sbjct: 90 SLQPASKLGVKSGTTIDVDTAIRALVIKSANDVATVTAEHLAGSEAKFARLMTQKARDLG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + T F NA G+ TTARDMAILS R+ DFP + HYF + G+ Y + N Sbjct: 150 MRQTVFRNASGLPDDRQVTTARDMAILSQRLVQDFPDFFHYFDDDSFQWGGRTYKSHNKV 209 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 GADG+KTG+T ASG+N+ + +GD LI ++LG TRN Sbjct: 210 TQDLKGADGLKTGYTRASGYNLATTVRRGDHRLIGIVLGGRSGRTRN 256 >gi|118590830|ref|ZP_01548230.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia aggregata IAM 12614] gi|118436352|gb|EAV42993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia aggregata IAM 12614] Length = 295 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 137/222 (61%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +L+ +TG + D P PASL+K+MT Y++F + E + L+TP+++S A+ PP+ Sbjct: 64 VLNASTGEELYAVDADAPRYPASLSKMMTLYLLFEAVSEGRYSLSTPLSVSAKAASEPPA 123 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST+T++ A + L VKSAND+A+ +AE+L +E F + M + ++ LGLS T F Sbjct: 124 KIGLKAGSTITVEEAARALAVKSANDVAIVVAENLAGSEAAFARQMTSQARALGLSRTRF 183 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ ++ARDMA+L +K FPQY Y++ K G+ + TN VG G Sbjct: 184 VNATGLPDPAQVSSARDMAVLGLTLKRRFPQYASYYRAKSFSYNGRTFRATNNLVGKVAG 243 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 DG+KTG+ SG+N+VA+A +G + LI V++G R+K Sbjct: 244 VDGLKTGYIRMSGYNLVATANRGGKRLIVVVMGGASEAARDK 285 >gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] gi|99038656|gb|ABF65268.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] Length = 496 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D +PASLTK+MT Y+ F ++ + L T IT+S+NA PPS Sbjct: 2 VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPPS 61 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + L ++ VKSAND A AI E++ +E F + MN T+K LG++ T F Sbjct: 62 ELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTTF 121 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ +GH +TARDM IL + D+P+Y + F K NTN + + Sbjct: 122 KNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAYR 181 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG+T A+GFN+V+SA +GD+ +IA + G RN A LL +GF Sbjct: 182 GADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGKSTAARNAKIAELLDLGF 234 >gi|89056340|ref|YP_511791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] gi|88865889|gb|ABD56766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] Length = 468 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/261 (37%), Positives = 150/261 (57%), Gaps = 2/261 (0%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A+ + +F ++ A+ N PY + +D G V+ D +PASLTK+MT Y+ Sbjct: 6 LFVALLGVQILFGAVAPAQVNAAPYAAMVMDARNGEVLHSRNADTRLHPASLTKMMTLYI 65 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T +T+S NA+ PPS G+T+ L L+ ++S ND A AI Sbjct: 66 AFEAIRLGEITLDTEVTVSANAAAEPPSRLGLSAGTTIRLRYLLRAAAIRSGNDAATAIG 125 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +E F + M T++ LG++ T F NAHG+ + GH +TARDM +L R+ D+PQY Sbjct: 126 EAISGSEAAFARRMTRTARALGMTRTTFRNAHGLTEDGHLSTARDMTMLGRRLVYDYPQY 185 Query: 185 MHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + NTN V T+ GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 186 YNLFSRVTADAGIATIRNTNRVVLTTYRGADGIKTGYTRAAGFNLVASAQRGEERIIATV 245 Query: 244 LGALDRNTRNKVSASLLSMGF 264 G RN+ LL MGF Sbjct: 246 FGGRSSAWRNQRVMELLDMGF 266 >gi|197104762|ref|YP_002130139.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum HLK1] gi|196478182|gb|ACG77710.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum HLK1] Length = 417 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/272 (36%), Positives = 153/272 (56%), Gaps = 2/272 (0%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P+ +A+T+ ++D TG V+ EN D P PAS+TK+MT Y+ F L K L Sbjct: 32 PYQMLAQTSSKYAAIVVDAKTGEVLYENRADSPRYPASITKVMTLYLTFEALASGKIDLD 91 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + S A+ PP+ + G ++++D A+K L KSAND AVA+AE L TE++F Sbjct: 92 DRVVFSPRAAAQPPTKLGVRAGDSISVDEAMKALATKSANDAAVALAEKLAGTEQRFAAL 151 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG++ T+F NA G+ +TARD+AILS + D+PQY F ++ +G Sbjct: 152 MTLRARELGMTDTNFANASGLPDSRQVSTARDIAILSRAVMRDYPQYYKLFSLQYFNFRG 211 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + G DG+KTGF ASGFN+ ASA++ + LIAV+LG R+ + Sbjct: 212 QTMRNHNGLLHRMDGVDGLKTGFINASGFNLAASAVRDGRRLIAVVLGGPTSRARDNNAE 271 Query: 258 SLLSMGF--YNKTDRKKINYIIKDFYQQNLSN 287 SLL GF ++ R + + + F++ ++ Sbjct: 272 SLLLTGFEVLDRRARGEDIQVAQSFFESPMTG 303 >gi|16126400|ref|NP_420964.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15] gi|13423656|gb|AAK24132.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15] Length = 435 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/271 (37%), Positives = 146/271 (53%), Gaps = 4/271 (1%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT I +S A Sbjct: 45 PKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSPRA 104 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M + LG Sbjct: 105 AAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQELG 164 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + T F+NA G+ +TARD+AILS DFPQY YF +KG +G N Sbjct: 165 MRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHNRL 224 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-- 264 + + G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ LL GF Sbjct: 225 LDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDV 284 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + R + I + Y+ S + S E Sbjct: 285 IKRRSRGERTTIAANIYEDEPSGPIERPSAE 315 >gi|221235180|ref|YP_002517616.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter crescentus NA1000] gi|220964352|gb|ACL95708.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter crescentus NA1000] Length = 451 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/271 (37%), Positives = 146/271 (53%), Gaps = 4/271 (1%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT I +S A Sbjct: 61 PKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSPRA 120 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M + LG Sbjct: 121 AAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQELG 180 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + T F+NA G+ +TARD+AILS DFPQY YF +KG +G N Sbjct: 181 MRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHNRL 240 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-- 264 + + G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ LL GF Sbjct: 241 LDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDV 300 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + R + I + Y+ S + S E Sbjct: 301 IKRRSRGERTTIAANIYEDEPSGPIERPSAE 331 >gi|260427958|ref|ZP_05781937.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45] gi|260422450|gb|EEX15701.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45] Length = 519 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 158/270 (58%), Gaps = 9/270 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMT 61 QF I+A+ ML+ + P +IA P+ + +D +G V+ D P +PASLTK+MT Sbjct: 15 QF--ILAIVMLAAM-PLSAIAA----PFAAMVMDARSGEVLHSENADTPLHPASLTKMMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F ++ + + + +T+S+NA+ PPS ++G + L ++ VKSAND A Sbjct: 68 LYIAFEAVEHGEITMDSVVTVSRNAASEPPSKLGLREGQKIKLRYLVRAAAVKSANDAAT 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E++ +E F + MN T+K LG++ + F NA+G+ + GH +TARDM+IL + D+ Sbjct: 128 AIGEAIAGSEAAFARRMNRTAKALGMTRSTFKNANGLTESGHMSTARDMSILGRHMVYDY 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 PQY + F ++ NTN +G++ GADG+KTG+T A+GFN+VASA +G + +I Sbjct: 188 PQYYNLFSRISTSAGVREVANTNRRFLGSYKGADGIKTGYTRAAGFNLVASAERGQERVI 247 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + G RN A L+ +GF R Sbjct: 248 TTVFGGASTAARNAKVAQLMDLGFKRAKTR 277 >gi|328541732|ref|YP_004301841.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326411484|gb|ADZ68547.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 458 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 150/256 (58%), Gaps = 7/256 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D ++G V+ E W PASLTK+MTAYV ++E ++ L + +T S+N+ P Sbjct: 36 WIVIDADSGQVLDEFQGTRRWYPASLTKMMTAYVTLKAIREGRSSLDSAVTQSQNSLAQP 95 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS FK G+ MT+D ALK+++VKSANDIAVA+ E++ TE FV MN + LG+ T Sbjct: 96 PSKMGFKVGTQMTVDTALKIVMVKSANDIAVALGEAIGGTEANFVALMNAEAARLGMRDT 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N HG+ + ++A DMAIL+ ++ DFP+ Y+ GL + + N F Sbjct: 156 HFANPHGLPDNRQVSSALDMAILARALRRDFPEARGYYGHAGLTFGKQTLRSANR---EF 212 Query: 211 L----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 L GADGMKTG+ C SG+N+ ASA + +++IAV+LGA R + + GF Sbjct: 213 LLRVPGADGMKTGYICNSGYNVAASATRRGRTVIAVVLGASSGLERTAFAREAIDKGFRA 272 Query: 267 KTDRKKINYIIKDFYQ 282 + + ++ + + Q Sbjct: 273 RGSGRTVDNMPRSAGQ 288 >gi|260432451|ref|ZP_05786422.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416279|gb|EEX09538.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 475 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 148/277 (53%), Gaps = 2/277 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG V+ D +PASLTK+MT Y+ F ++ + L TP+TI+K A+ Sbjct: 33 PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTPVTITKAAA 92 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + ++ VKSAND A AI +L +E F + M T+K +G+ Sbjct: 93 AEPPSKLGLRAGQKIAFRYLIRAAAVKSANDAATAIGIALSGSEAAFARRMTRTAKAMGM 152 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NAHG+ + GH +TARDM L + D+P+Y + F + K PNTN Sbjct: 153 SRTTFKNAHGLTEPGHLSTARDMTTLGRHLLYDYPEYYNLFSRQSTYAGIKTVPNTNRRL 212 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T A+GFN+VASA +G++ +IA + G RN A LL +GF Sbjct: 213 LAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSAWRNAKVAELLDLGFRR 272 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 R I + Y N ++ + Q+ + Sbjct: 273 APSRAPIRKPSRPAYAGNAGLGDTQVARAIGAPQQSL 309 >gi|110678603|ref|YP_681610.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter denitrificans OCh 114] gi|109454719|gb|ABG30924.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter denitrificans OCh 114] Length = 485 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 140/250 (56%), Gaps = 1/250 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D +PASLTK+MT Y+ F ++ + L T + IS+ A+ PPS Sbjct: 38 VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVENGEISLDTKVKISRFAAAEPPS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G + ++ +KSAND A AI E+L +E F + MN T+K LG++ T F Sbjct: 98 KLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEALEGSEAAFARRMNRTAKELGMTRTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ + GH +TARDM++L + D+P+Y + F + + NTN + + Sbjct: 158 KNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYNLFSRRSTHAGVRDVANTNRRLLAAYR 217 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG+T A+GFN+VASA +G + +IA + G RNK A LL MGF R Sbjct: 218 GADGIKTGYTRAAGFNLVASAERGQERIIATVFGGTSTIARNKRVAELLDMGFKRAPSRA 277 Query: 272 KINYIIKDFY 281 + K Y Sbjct: 278 TVRKPKKPSY 287 >gi|254460841|ref|ZP_05074257.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2083] gi|206677430|gb|EDZ41917.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 454 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/255 (39%), Positives = 140/255 (54%), Gaps = 2/255 (0%) Query: 29 PYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++D +G V+ D +PASLTK+MT YV F ++ + L T + IS NA+ Sbjct: 13 PYAAFVMDARSGEVLHARNADTRLHPASLTKMMTLYVAFQAIENGEITLDTTVKISANAA 72 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + G + ++ VKSAND A AI E L +E F + M T+K+LG+ Sbjct: 73 AEQPSKLGLRSGQRIKFRYLIRAAAVKSANDAATAIGEILEGSEAAFARRMTRTAKSLGM 132 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NAHG+ + GH +TARDM+ L + D+P Y + F K + K PNTN Sbjct: 133 SKTTFKNAHGLTEKGHLSTARDMSTLGRHLLYDYPDYYNLFSRKSTDAGVKTVPNTNRRL 192 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T A+GFN+VASA +G + +IA + G TRN A LL MGF Sbjct: 193 LSNYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSTATRNARVAELLDMGFKR 252 Query: 267 KTDRKKINYIIKDFY 281 R + K Y Sbjct: 253 APSRVALRKPTKPAY 267 >gi|307825263|ref|ZP_07655483.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter tundripaludum SV96] gi|307733719|gb|EFO04576.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter tundripaludum SV96] Length = 395 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 139/237 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G+V+ E W PASLTKLMT Y+ F LK + L +T S AS+ P S Sbjct: 31 IIDADNGNVLHEVEATQSWYPASLTKLMTLYMTFDALKAGQIHLHDTLTASTRASQQPNS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G +T+++A+ +I +SAND +V +AE L TE+ F +M + +LG+ THF Sbjct: 91 KLGLRRGEHLTVEDAILAIITRSANDASVVLAEHLGDTEENFAVNMTEKADSLGMYNTHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 MNA G+ + TT RDMA+L+W+ + +FP+Y HYF KG + N ++ G Sbjct: 151 MNATGLPNNWQVTTPRDMAVLAWKAQRNFPEYYHYFSAHSFNYKGTELRGINKFTASYPG 210 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A+GMKTGFTC SGFN++ +A Q + LI V++G + R ++ + F N T+ Sbjct: 211 AEGMKTGFTCGSGFNLIGAAHQNGKHLIGVVMGGMTSKERYQLMMQKMDASFANLTN 267 >gi|307945901|ref|ZP_07661237.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4] gi|307771774|gb|EFO30999.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4] Length = 301 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 137/221 (61%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +L+ TG + D P PASLTK+MT Y++F + + + L+TP+ +S NA+ PPS Sbjct: 69 VLNGYTGRELLSENADAPRFPASLTKMMTLYLLFEEVSKGRYTLSTPLNVSANAASQPPS 128 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST+T++ A + L +KSAND+A+A+AE++ +E F + M +K+LGL+ T F Sbjct: 129 KIGLKPGSTITVEQAARALAIKSANDVAIAVAENISGSEAAFARKMTQKAKSLGLTRTRF 188 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMA L +K FPQY Y++ + + G+++ TN +G G Sbjct: 189 VNASGLPNPRQVTTARDMAKLGMALKRRFPQYASYYKARSVTYNGRRFKATNNLIGKVAG 248 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ SG+N+VA++ + + L+ V++G + R+ Sbjct: 249 VDGLKTGYVRLSGYNLVATSRRNGRKLVVVVMGGASESARD 289 >gi|170748801|ref|YP_001755061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170655323|gb|ACB24378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 509 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 148/260 (56%), Gaps = 3/260 (1%) Query: 8 IAMAMLSNIFP--FLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A L+ + + I N + L+ D ++G VI P PW PAS+TKLMT YV Sbjct: 11 VGLAALTGLLGAGLVGIGAANAVTVPILVADVDSGKVIYAQAPTDPWYPASITKLMTTYV 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +++ K L + ITIS A+ PPS FK G+ +TLDNALK+++VKSAND+A AI Sbjct: 71 ALDLVRQGKVSLDSMITISAAAAAEPPSKMGFKPGTQLTLDNALKIIMVKSANDVAYAIG 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 ESL + + F MN T++ +G+ + + N +G+ +T+ARDMA+L+ + DFP Sbjct: 131 ESLGGSVENFAALMNETAQRIGMHDSRWYNPNGLPDPRQWTSARDMAVLARALIRDFPDS 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F I ++ N N +G + G DGMKTGF C+ GFN+VA+A + + ++ +++ Sbjct: 191 HDLFSISAIQFGRAVMANHNGLLGRYPGTDGMKTGFICSGGFNVVATATRNGRRIVTIVM 250 Query: 245 GALDRNTRNKVSASLLSMGF 264 G R+ +A L F Sbjct: 251 GQPSPRERDVKTADLFDYAF 270 >gi|83311331|ref|YP_421595.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82946172|dbj|BAE51036.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 417 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 134/216 (62%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + +D +G VIAE+ P +PASLTK+MTAYV F+ +K K IT+S+ A+ Sbjct: 33 FLAVDLGSGAVIAESRGGAPHHPASLTKMMTAYVAFAAIKAGKVSQDDVITVSERAASQG 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + G +TL ALK +IV+SAND AVA+AE + +E F M + LG++++ Sbjct: 93 GASLDLRPGERITLGAALKAMIVRSANDAAVAVAEHVGGSESAFASRMTEEAARLGMTSS 152 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F NA G+ GH ++ RDMA+L+ I+ DFP + F + KG+ P N +G + Sbjct: 153 SFRNASGMTAGGHVSSPRDMAVLAMAIERDFPTFRPLFSSRDTTWKGRVLPTVNGFLGAY 212 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GA+GMKTGFTC++G+N+VA A +G + +AV++GA Sbjct: 213 AGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGA 248 >gi|83952372|ref|ZP_00961103.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius nubinhibens ISM] gi|83836045|gb|EAP75343.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius nubinhibens ISM] Length = 491 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 150/262 (57%), Gaps = 3/262 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D +PASLTK+MT YVVF ++ + L ITIS++A+ PPS Sbjct: 18 VIDARSGEVLHSRNADSRLHPASLTKMMTLYVVFEAVENGEISLDDTITISRHAASEPPS 77 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L ++ VKSAND A A+ E++ +E +F + M T+K LG++ T F Sbjct: 78 KLGLRAGQKIKLRYLIRAAAVKSANDAATALGEAIEGSEARFARRMTRTAKALGMTRTTF 137 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ + GH +TARDM L + DFP+Y + F + + NTN + + Sbjct: 138 KNAHGLTEDGHLSTARDMTTLGRHLFYDFPEYYNLFSRVETDAGVRSVSNTNRRLLSAYK 197 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG+T A+GFN+VASA +G++ +IA + G ++RN A LL +GF R Sbjct: 198 GADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSHSRNAEVAELLDLGFARAPRRV 257 Query: 272 KINYIIKDFYQQNL--SNEVPN 291 +N + Y + S++ P+ Sbjct: 258 AVNKPARPPYYGKIGGSDDAPD 279 >gi|84516588|ref|ZP_01003947.1| Probable penicillin-binding protein [Loktanella vestfoldensis SKA53] gi|84509624|gb|EAQ06082.1| Probable penicillin-binding protein [Loktanella vestfoldensis SKA53] Length = 521 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 142/249 (57%), Gaps = 4/249 (1%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY L +D TG V+ D +PASLTK+MT YV F ++ + L T +T++ +A+ Sbjct: 33 PYAALVMDARTGEVLHARNADTRLHPASLTKMMTLYVAFQAIERGEISLDTEVTVTSHAA 92 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + L ++ V+SAND A AI ++ +E+ F MN T+ +G+ Sbjct: 93 NEPPSKLGLRAGQRIRLRYLIRAAAVRSANDAATAIGIAISGSEEAFATRMNQTAAAMGM 152 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNW 205 S T F NAHG+ Q GH +TARDM++L + DFPQY + F + + + ++ N W Sbjct: 153 SNTTFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRTADAGVATVQHTNRRW 212 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + ++ G DG+KTGFT ASGF++VASA +GDQ +IA + G RN + L+ MGF Sbjct: 213 -LDSYPGGDGIKTGFTNASGFSLVASAQRGDQRIIATVFGGTSTAARNARISELMDMGFS 271 Query: 266 NKTDRKKIN 274 +N Sbjct: 272 TAPRSANVN 280 >gi|254505026|ref|ZP_05117177.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia alexandrii DFL-11] gi|222441097|gb|EEE47776.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia alexandrii DFL-11] Length = 299 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 132/221 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +L+ TG + D P PASLTK+MT Y++F + + L++P+ IS NA+ PP+ Sbjct: 65 VLNAATGQELYAVNADAPRFPASLTKMMTLYMLFESVSSGENRLSSPLNISANAASQPPA 124 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST++++ A + L VKSAND+ VA+AE+L +E F + M ++ LGLS T F Sbjct: 125 KIGLKAGSTISVEQAARALAVKSANDVGVAVAENLAGSEAAFAREMTQKARALGLSRTRF 184 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMA L +K FPQY Y++ K G+ + TN +G G Sbjct: 185 VNATGLPDPAQVTTARDMAKLGLALKRRFPQYASYYRAKSFTYNGRTFRATNNLLGKVQG 244 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ SG+N+VA+A +G + LI V++G R+ Sbjct: 245 VDGLKTGYVRMSGYNLVATARRGGKQLIVVVIGGQSETARD 285 >gi|300022145|ref|YP_003754756.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299523966|gb|ADJ22435.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 583 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 139/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD N+G V+ + D +PASLTK+MT Y+ F ++ + ++ ITIS A+ PS Sbjct: 34 VLDVNSGAVLHNDDGDAIRHPASLTKMMTLYLTFELIESSRLKMSDMITISDRAANAAPS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G+ +++ +++K ++ KSANDIAVA+AE + TE FV+ MN +++LG++ THF Sbjct: 94 KLDLKPGAQISVADSIKAVVTKSANDIAVALAEKIGGTEANFVRLMNTRARDLGMTKTHF 153 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ H +TA DMAIL+ R+ DFP + F + +GK Y N N + TF G Sbjct: 154 ENPSGLPDDDHVSTAHDMAILALRLMDDFPAHYQVFSTRTFAYRGKSYRNHNTMLNTFQG 213 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T ASGFN+V S +G + L+ V+ G RN LL+ F Sbjct: 214 VDGIKTGYTRASGFNLVTSVHRGGRHLVGVVFGGSTAAARNAEMRVLLTKAF 265 >gi|325982052|ref|YP_004294454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212] gi|325531571|gb|ADZ26292.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212] Length = 415 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 155/259 (59%), Gaps = 5/259 (1%) Query: 16 IFPFLSIAETNKL--PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 IF L I + L P Y+ ++D +TG V+ E+ D PASLTK+MT Y++F +++ Sbjct: 17 IFLLLLIVSDSALANPRYSSIVIDADTGAVLHESNADANRYPASLTKMMTLYMLFEAMEQ 76 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 +K + T + +S +A+ P +N + G ++++ +A+ LIV+SAND+A +AE+L K+E Sbjct: 77 RKMTVDTRMPVSTHAAAMPQTNIGLRTGDSISVRDAIPALIVRSANDVAAVVAEALGKSE 136 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F + M + ++ LG+ +T F NA G+ TTARDM LS R+ DFP+Y HYF + Sbjct: 137 ANFGRMMTDKARQLGMRSTTFRNASGLPNLEQKTTARDMVTLSTRLMKDFPKYYHYFSTQ 196 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 KG Y + N V G DG+KTGF ASGFN+ SA +G++ ++AV++G Sbjct: 197 SFSYKGITYNSHNRMVRNTSGVDGLKTGFIRASGFNVATSAKRGNRRVVAVVMGGNTAAA 256 Query: 252 RNKVSASLLSMGFYNKTDR 270 R++ A L+ F N+ +R Sbjct: 257 RDQHMAQLIDRSF-NQGNR 274 >gi|159043222|ref|YP_001532016.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12] gi|157910982|gb|ABV92415.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 141/247 (57%), Gaps = 2/247 (0%) Query: 20 LSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 +S PY + +D TG V+ D +PASLTK+MT Y+ F ++ + L T Sbjct: 23 ISAQPVQAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRMGEIGLDT 82 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + ISK A+ PPS + G + L ++ V+SAND A AI E++ +E F + M Sbjct: 83 KVRISKKAAAEPPSKLGLRPGQQIALRYLIRASAVRSANDAATAIGEAISGSEAAFARRM 142 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N T+K LG+++T F NAHG+ + GH +TARDM L + D+P+Y + F + + Sbjct: 143 NRTAKALGMNSTTFKNAHGLTESGHLSTARDMTTLGRHLFYDYPEYYNLFSRRSTDTTMG 202 Query: 199 KYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 NTN + + GADG+KTG+T A+GFN+VASA +G + +IA + G TRN+ A Sbjct: 203 TVANTNRRLLNAYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSSATRNQRVA 262 Query: 258 SLLSMGF 264 LL +GF Sbjct: 263 ELLDLGF 269 >gi|254487632|ref|ZP_05100837.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp. GAI101] gi|214044501|gb|EEB85139.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp. GAI101] Length = 470 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 151/268 (56%), Gaps = 6/268 (2%) Query: 16 IFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + P ++A PY ++D +G V+ + +PASLTK+MT Y+ F +K + Sbjct: 2 VLPLSALAA----PYAAYVIDARSGEVLHSRNAETRLHPASLTKMMTLYIAFEAIKRGEI 57 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L + + IS +A+ PPS K G T+ L ++ VKSAND A AI E++ +E KF Sbjct: 58 SLDSQVKISSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKF 117 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN T+K LG++ T F NAHG+ + GH +TARDM ++ + DFP+Y + F + Sbjct: 118 ARRMNRTAKALGMTKTTFKNAHGLTEAGHMSTARDMTMMGRHLLYDFPEYYNLFSRITAD 177 Query: 195 IKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +K +TN + ++ GADG+KTG+T A+GFN+VASA +G++ +I + G + RN Sbjct: 178 AGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLVASAERGNERVIVTVFGGTSTSARN 237 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFY 281 A L+ +GF + + K Y Sbjct: 238 AKVAELMDLGFRRAPSKAPLQKPAKPVY 265 >gi|126732363|ref|ZP_01748163.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula stellata E-37] gi|126707232|gb|EBA06298.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula stellata E-37] Length = 479 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 143/244 (58%), Gaps = 2/244 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG V+ D +PASLTK+MT Y+VF ++ + + T +T+SKNA+ Sbjct: 12 PYAAMVMDARTGKVLHAQNADTRLHPASLTKMMTLYIVFEAVQNGELTMDTLVTVSKNAA 71 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS ++G + L ++ VKSAND A AI E++ +E F + MN T+K +G+ Sbjct: 72 AEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAVEGSEAAFARRMNRTAKAIGM 131 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 + T F NAHG+ GH +TARDM IL + D+P+Y + F + + +TN Sbjct: 132 TRTTFKNAHGLTAEGHLSTARDMTILGRHVIYDYPEYYNLFSRVTADAGVRTVSHTNRRL 191 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ++ GADG+KTG+T A+GFN+VASA +G + +IA + G +RN A LL +GF Sbjct: 192 LQSYKGADGIKTGYTRAAGFNLVASAERGRERVIATVFGGQSTASRNAKVAELLDLGFRE 251 Query: 267 KTDR 270 R Sbjct: 252 SPTR 255 >gi|163733947|ref|ZP_02141389.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter litoralis Och 149] gi|161393058|gb|EDQ17385.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter litoralis Och 149] Length = 511 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 1/250 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D +PASLTK+MT Y+ F ++ + L T + IS+ A+ PPS Sbjct: 62 VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVENGEISLDTKVKISRFAASEPPS 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G + ++ +KSAND A AI E+L +E F + M T+K LG++ T F Sbjct: 122 KLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEALEGSEAAFARRMTRTAKELGMTRTTF 181 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ + GH +TARDM++L + D+P+Y + F + + NTN + + Sbjct: 182 KNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYNLFSRRSTHAGVRDVANTNRRLLAAYR 241 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG+T A+GFN+VASA +G + +IA + G RN A LL MGF R Sbjct: 242 GADGIKTGYTRAAGFNLVASAERGQERIIATVFGGTSTIARNARVAELLDMGFKRAPSRA 301 Query: 272 KINYIIKDFY 281 + K Y Sbjct: 302 TVRKPQKPSY 311 >gi|114771313|ref|ZP_01448733.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha proteobacterium HTCC2255] gi|114548238|gb|EAU51125.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha proteobacterium HTCC2255] Length = 481 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 142/245 (57%), Gaps = 3/245 (1%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY L +D TG V+ D +PASLTK+MT Y+ F ++ L + +S+NA+ Sbjct: 26 PYAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLAFKAVESGHLSLDEKVKVSRNAA 85 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + + + ++ VKSAND A A+ E++ +E KF M +K LG+ Sbjct: 86 SEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGEAIAGSEAKFTALMTAQAKALGM 145 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 T F NAHG+ GH +TARDM+IL + DFP Y + F + + + PNTN Sbjct: 146 KRTTFKNAHGLTARGHLSTARDMSILGRHLMYDFPDYYNLFSRRNTDAGLRTVPNTNRRL 205 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T A+GFN+V+SA +G++ +IA + G +RN A LL MGF N Sbjct: 206 LANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVFGGRTWRSRNARVAELLDMGF-N 264 Query: 267 KTDRK 271 +T ++ Sbjct: 265 RTPKR 269 >gi|188584526|ref|YP_001927971.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179348024|gb|ACB83436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 494 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G + D +PAS+TK+MT Y++F L++ + L +P++IS NA+ Sbjct: 50 PYAAMVVDVKSGRTLHAVNEDALRHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAA 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + GST+T++ A+K L+ KSAND+A AI E++ +E +F + M +K LG+ Sbjct: 110 AQAPSKLGLRPGSTVTVEEAIKALVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S TH+ NA G+ TTA D+ IL+ I+ FP+Y YFQ + +G+ N N + Sbjct: 170 SRTHYANASGLPDPDQITTAHDLTILARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLL 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G G DG+KTG+T SGFN++ +A GD+ ++A++LG +R+++ A L+ Sbjct: 230 GNVEGVDGIKTGYTRDSGFNLMTAAKLGDRQIVAIVLGGKSGASRDRIMADLV 282 >gi|255262711|ref|ZP_05342053.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium sp. R2A62] gi|255105046|gb|EET47720.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium sp. R2A62] Length = 465 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG V+ D +PASLTK+MT Y+ F ++ + L T ITI + A+ Sbjct: 13 PYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVERGELSLDTMITIPRVAA 72 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + L ++ VKSAND A AI ++ +E F + M T++ +G+ Sbjct: 73 NEPPSKLGLRAGQKIRLRYLIRGAAVKSANDAATAIGVAISGSEAAFARRMTRTAEAMGM 132 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NAHG+ ++GH +TARDM L + D+PQY + F + + ++ NTN Sbjct: 133 SRTTFKNAHGLTENGHMSTARDMTNLGRHMIYDYPQYYNLFSRRSADAGVREVANTNRRL 192 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G + GADG+KTG+T A+GFN+VASA +G + +IA + G TRN A LL MGF Sbjct: 193 LGNYRGADGIKTGYTRAAGFNLVASAERGQERVIATVFGGRSSATRNDRVAELLDMGF 250 >gi|297183970|gb|ADI20090.1| d-alanyl-d-alanine carboxypeptidase [uncultured alpha proteobacterium EB080_L06A09] Length = 481 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 100/273 (36%), Positives = 155/273 (56%), Gaps = 11/273 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKL 59 +R F++++ + +F +S+ PY L +D TG V+ D +PASLTK+ Sbjct: 6 IRGFILVVVL-----LFTGVSVYGA---PYAALVMDARTGEVLHSRNADTRLHPASLTKM 57 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F ++ L + +S+NA+ PPS + G + + + ++ VKSAND Sbjct: 58 MTLYLAFKAVESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDA 117 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A+ E++ +E KF M +K LG+ T F NAHG+ GH +TARDM+IL + Sbjct: 118 ATALGEAIAGSEVKFTTLMTAQAKALGMKRTTFKNAHGLTAKGHLSTARDMSILGRHLMY 177 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP Y + F + + + PNTN + + GADG+KTG+T A+GFN+V+SA +G++ Sbjct: 178 DFPDYYNLFSRRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKR 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 +IA + G +RN A LL MGF N+T +K Sbjct: 238 IIATVFGGRTWKSRNARVAELLDMGF-NRTPKK 269 >gi|307546895|ref|YP_003899374.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] gi|307218919|emb|CBV44189.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] Length = 494 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 144/242 (59%), Gaps = 2/242 (0%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++DT+T ++ D P PASLTK+MT Y++F L + L + +S A Sbjct: 45 PRYAGIVVDTDTSEILYAENADAPRYPASLTKMMTLYMLFERLDQGGMTLGQRLPVSATA 104 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 SE P + K G ++ ++ A++ LIV+SAND+AV +AE+L +E F + M + + LG Sbjct: 105 SEMPATKLWLKPGDSIPVEKAIQALIVRSANDVAVVVAEALGGSESHFARMMTSRAHELG 164 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 +S T F NA G+ TTARDMA+L+ R+ DFPQY YF + +GK N Sbjct: 165 MSNTTFRNASGLPDDRQVTTARDMALLARRLMLDFPQYYPYFSLDRFTWRGKTLTGHNNL 224 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ++ GADG+KTGF ASGFN+ SA +G + +++V++G ++R++ A+LL GF Sbjct: 225 LDSYPGADGLKTGFIRASGFNVATSAKRGGRRILSVVMGGYTASSRDEHMANLLDRGFLR 284 Query: 267 KT 268 + Sbjct: 285 AS 286 >gi|114765840|ref|ZP_01444933.1| D-alanyl-D-alanine carboxypeptidase family protein [Pelagibaca bermudensis HTCC2601] gi|114541839|gb|EAU44876.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. HTCC2601] Length = 486 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 96/258 (37%), Positives = 145/258 (56%), Gaps = 2/258 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G V+ D P +PASLTK+MT Y+ F ++ + + T +TIS+NA+ Sbjct: 7 PYAAMVVDARSGEVLHSENADTPLHPASLTKMMTLYLAFEAVEHGELTMDTVVTISRNAA 66 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS + G + L ++ VKSAND A AI E++ +E F + MN T+K +G+ Sbjct: 67 AEPPSKLGLRSGQKIKLRYLVRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKAMGM 126 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 S T F NA+G+ + GH +TARDM +L + D+PQY + F + NTN Sbjct: 127 SRTTFKNANGLTETGHMSTARDMTLLGRHMIYDYPQYYNLFSRITTHAGMHEVYNTNRRF 186 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +G + GADG+KTG+T A+GFN+VASA +G + ++ + G +RN A L+ +GF Sbjct: 187 LGAYKGADGIKTGYTRAAGFNLVASAERGSERVVTTVFGGRSTASRNAKVAELMDLGFKR 246 Query: 267 KTDRKKINYIIKDFYQQN 284 R + K Y N Sbjct: 247 AKTRVALRAPGKPPYLGN 264 >gi|240141656|ref|YP_002966136.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens AM1] gi|240011633|gb|ACS42859.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens AM1] Length = 494 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G + D +PAS+TK+MT Y++F L++ + L +P++IS NA+ Sbjct: 50 PYAAMVVDVKSGRTLHAVNEDALRHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAA 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + GST+T++ A+K L+ KSAND+A AI E++ +E +F + M +K LG+ Sbjct: 110 AQAPSKLGLRPGSTVTVEEAIKALVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S TH+ NA G+ TTA D+ +L+ I+ FP+Y YFQ + +G+ N N + Sbjct: 170 SRTHYANASGLPDPDQITTAHDLTLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLL 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G G DG+KTG+T SGFN++ +A GD+ ++A++LG +R+++ A L+ Sbjct: 230 GNVEGVDGIKTGYTRDSGFNLMTAAKLGDRQIVAIVLGGKSGASRDRIMADLV 282 >gi|218533141|ref|YP_002423957.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218525444|gb|ACK86029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 494 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G + D +PAS+TK+MT Y++F L++ + L +P++IS NA+ Sbjct: 50 PYAAMVVDVKSGRTLHAVNEDALRHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAA 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + GST+T++ A+K L+ KSAND+A AI E++ +E +F + M +K LG+ Sbjct: 110 AQAPSKLGLRPGSTVTVEEAIKALVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S TH+ NA G+ TTA D+ +L+ I+ FP+Y YFQ + +G+ N N + Sbjct: 170 SRTHYANASGLPDPDQITTAHDLTLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLL 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G G DG+KTG+T SGFN++ +A GD+ ++A++LG +R+++ A L+ Sbjct: 230 GNVEGVDGIKTGYTRDSGFNLMTAAKLGDRQIVAIVLGGKSGASRDRIMADLV 282 >gi|118591083|ref|ZP_01548482.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614] gi|118436159|gb|EAV42801.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614] Length = 561 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 134/221 (60%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + + D PASLTK+MT Y+VF L+ + L + +++S AS PPS Sbjct: 40 VVDAKTGKTLYSSSADSYRYPASLTKIMTLYLVFEELEAGRLSLDSNLSVSSYASARPPS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ + +A+ L+ KSAND+A IAE+L +EKKF + M T++ +G+S T F Sbjct: 100 KLGLKPGGTIKVKDAILALVTKSANDVASVIAENLGGSEKKFAERMTRTARQIGMSKTTF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N HG+ +G TTARDMA L I+ FPQY YF+ + + KG+ Y N N +G G Sbjct: 160 RNPHGLPDNGQRTTARDMATLGRAIQERFPQYYGYFKTRAYKYKGRTYGNHNKLLGRVKG 219 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ ASGFN+V S + + ++AV++G +RN Sbjct: 220 VDGIKTGYIRASGFNLVTSVNRDGRHIVAVVMGGKTGASRN 260 >gi|114705410|ref|ZP_01438318.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114540195|gb|EAU43315.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 467 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 161/286 (56%), Gaps = 5/286 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++++ PAS TKLMTAY+ ++ TP+ +++ A+ PS Sbjct: 69 VVDLETGKVLSQSNATERRYPASTTKLMTAYLAMKAVEVGSMDWDTPVVMTRQAANEAPS 128 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATH 151 GS M LD A++ L+VKSAND+A A+ ++L + + FV MN T+ +G+ T Sbjct: 129 KLDIPPGSIMRLDEAVRALLVKSANDVATAVGQTLGHGSSETFVAMMNRTAGLIGMRDTQ 188 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+NAHG+ G +++A+D+AIL+ I+ +FP+Y +F + + GK N N +G + Sbjct: 189 FINAHGLPGEGQHSSAKDLAILAMAIREEFPEYKDWFGTEAIVFNGKLMNNGNKLLGRYD 248 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GA+GMKTG+ CA GFN+V++ + +++LIAV+LGA R +SA L F D Sbjct: 249 GAEGMKTGYICAGGFNLVSAVTRDNRTLIAVVLGANGTIERETLSAELYETAFKADLD-- 306 Query: 272 KINY-IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 NY +K+ ++S +C+ + N ++ + +DK Sbjct: 307 -ANYKTVKELPIVGDGKVTLDVSNYICSGEGRTARANDRVADRRDK 351 >gi|307946404|ref|ZP_07661739.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] gi|307770068|gb|EFO29294.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] Length = 492 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 144/251 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + + D PASLTK+MT Y+VF L+ + L + +SKNAS+ PPS Sbjct: 43 VVDAKTGKTLYADSADAYRYPASLTKIMTLYIVFEELEAGRLSLNSKFKVSKNASKEPPS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ + +A+ L+ KSAND+A +AE++ +E KF + M NT++ LG+ T F Sbjct: 103 KIGLRPGQTIKVKDAILALVTKSANDVATTVAENIAGSEAKFAKRMTNTARQLGMKRTTF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NAHG+ TTARDM+ L I+ FP+Y YF + KG++Y N N +G G Sbjct: 163 RNAHGLPNSRQRTTARDMSRLGIAIQERFPKYYKYFNTRVYSYKGRRYGNHNKLLGRVKG 222 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+ ASGFN+V S + + ++AV++G +RN+ +L+ + + +K Sbjct: 223 VDGIKTGYIRASGFNLVTSVNRNGRHIVAVVMGGRTGASRNRHMTNLIGRYLHKASKGRK 282 Query: 273 INYIIKDFYQQ 283 ++ +Q Sbjct: 283 SAPLVAKVKRQ 293 >gi|254564164|ref|YP_003071259.1| D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] gi|254271442|emb|CAX27457.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] Length = 494 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G + D +PAS+TK+MT Y++F L++ + L +P++IS NA+ Sbjct: 50 PYAAMVVDVKSGRTLHAVNEDALRHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAA 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + GST+T++ A+K L+ KSAND+A AI E++ +E +F + M +K LG+ Sbjct: 110 AQAPSKLGLRPGSTVTVEEAIKALVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S TH+ NA G+ TTA D+ +L+ I+ FP+Y YFQ + +G+ N N + Sbjct: 170 SRTHYANASGLPDPDQITTAYDLTLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLL 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G G DG+KTG+T SGFN++ +A GD+ ++A++LG +R+++ A L+ Sbjct: 230 GNVEGVDGIKTGYTRDSGFNLMTAAKLGDRQIVAIVLGGKSGASRDRIMADLV 282 >gi|110633724|ref|YP_673932.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110284708|gb|ABG62767.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 465 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/262 (37%), Positives = 146/262 (55%), Gaps = 2/262 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTK 58 +R+ I +A+ + F A P Y ++D TG V+ E+ D PASLTK Sbjct: 30 LRKVTNIAVLAVATGAFVLSLAASAAANPKYAGIVIDAKTGQVLYEDSADELRYPASLTK 89 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y+VF + + +T IT SKNAS PP+ G ++T++ A+ LI +SAND Sbjct: 90 MMTLYLVFESMAAGRISKSTSITFSKNASAEPPTKLGVPAGKSITVEQAILALITRSAND 149 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A AIAE L +E+ F + M ++ LG+ +T F NAHG+ + TTARDMA L ++ Sbjct: 150 AATAIAEKLGGSEESFARMMTAKARQLGMKSTTFRNAHGLPNNAQKTTARDMARLGIALR 209 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +PQY YF + GKK N +G GADG+KTG+ ASGFN+V+S G + Sbjct: 210 EHYPQYYDYFSTRSFVFSGKKINGHNNLLGRVKGADGIKTGYINASGFNLVSSVSTGGRQ 269 Query: 239 LIAVILGALDRNTRNKVSASLL 260 ++AV++G +R+ SL+ Sbjct: 270 IVAVVMGGKTARSRDAHMVSLI 291 >gi|114569833|ref|YP_756513.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] gi|114340295|gb|ABI65575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] Length = 450 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 134/239 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ NTG V+ + PASLTK+MT Y++F L+ + L PI IS NA+ PS Sbjct: 42 VVEENTGVVLHSRRSEAERFPASLTKMMTLYMLFDALEAGEIGLNDPIRISANAANASPS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 GST++ +NA++ L+VKSAND+AVA+ E L E +F + M + +GL+ T F Sbjct: 102 RLGLAPGSTISAENAIRALVVKSANDVAVAVGERLGGGESRFGELMTARAAEIGLTNTTF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA L+ + DFPQY YF + G+ Y N N VG G Sbjct: 162 RNASGLPNSRQTTTARDMARLAIALHRDFPQYFDYFNEETFRYNGRTYRNHNSLVGRVRG 221 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 DG+KTG+ ASGFN+V SA + D LI VI+G R+ + L+ F R+ Sbjct: 222 VDGLKTGYIRASGFNVVVSAERDDHRLITVIMGGPSAAARDAHAEELIEAAFATLEQRQ 280 >gi|163854196|ref|YP_001642239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163665801|gb|ABY33168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 494 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 29 PYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++ D +G + D +PAS+TK+MT Y++F L++ + L +P++IS NA+ Sbjct: 50 PYAAMVVDVKSGRTLHAVNEDALRHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAA 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS + GST+T++ A+K L+ KSAND+A AI E++ +E +F + M +K +G+ Sbjct: 110 AQAPSKLGLRPGSTVTVEEAIKALVTKSANDVACAIGENIAGSEPRFAEMMTRKAKAIGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S TH+ NA G+ TTA D+ +L+ I+ FP+Y YFQ + +G+ N N + Sbjct: 170 SRTHYANASGLPDPDQITTAHDLTLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLL 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G G DG+KTG+T SGFN++ +A GD+ ++A++LG +R+++ A L+ Sbjct: 230 GNVEGVDGIKTGYTRDSGFNLMTAAKLGDRQIVAIVLGGKSGASRDRIMADLV 282 >gi|163744788|ref|ZP_02152148.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus indolifex HEL-45] gi|161381606|gb|EDQ06015.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus indolifex HEL-45] Length = 491 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/268 (35%), Positives = 149/268 (55%), Gaps = 6/268 (2%) Query: 16 IFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 I P ++A PY ++D TG I D +PASLTK+MT Y+ F ++ + Sbjct: 24 ILPLSAMAA----PYAAYVIDARTGKEIHAENADTRLHPASLTKMMTLYIAFQAVERGEL 79 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L T +TIS+NA+ PPS + G + L ++ VKSAND A AI E++ +E F Sbjct: 80 SLDTQVTISQNAASEPPSKLGMRPGQKIALRYLIRAAAVKSANDAATAIGEAIEGSEAAF 139 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN T+K LG++ T F N HG+ ++GH +TARDM + + D+PQY + F + Sbjct: 140 ARRMNRTAKQLGMTRTTFKNMHGLTENGHLSTARDMTAMGRHLLYDYPQYYNLFSRITAD 199 Query: 195 IKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +K +TN +G++ GADG+KTG+T A+GFN+ ASA +G++ +I + G +RN Sbjct: 200 AGVRKVSHTNRRFLGSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGNSTASRN 259 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFY 281 A L+ +GF ++ + Y Sbjct: 260 AKVAELMDLGFRRAPSSAPLSKPVPPVY 287 >gi|83945500|ref|ZP_00957847.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii HTCC2633] gi|83851076|gb|EAP88934.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii HTCC2633] Length = 418 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 145/258 (56%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I+A+ + ++F S AE ++ + D TG V+ D PASLTK+MT Y++F Sbjct: 5 ILALLCVLSVFALTSRAEASERYAAFVADMETGEVLHSRRADAERYPASLTKMMTLYMLF 64 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L+ + L IT S A+ P S + G T+ +++A++ LI++SAND+AVA+AE Sbjct: 65 EALERGEVSLDDAITASAEAASRPSSKLGLRAGQTIRVEDAIRALIIQSANDVAVAVAEH 124 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 L E +F M ++ LG++ T F NA G+ +TTARD+A L++ + DFPQY H Sbjct: 125 LQDDEARFAAVMTLRARELGMTNTVFRNASGLPDAAQHTTARDVARLAYALHEDFPQYYH 184 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 YF G + N N VG G DG+KTG+ ASGFN+ ASA + +IAV++G Sbjct: 185 YFGETRFRWNGVTHRNHNSLVGNQAGVDGLKTGYIRASGFNLAASAERDGHRIIAVVMGG 244 Query: 247 LDRNTRNKVSASLLSMGF 264 + + R+ + L+ F Sbjct: 245 VSASVRDAHARELIEAAF 262 >gi|315500037|ref|YP_004088840.1| serine-type d-ala-d-ala carboxypeptidase [Asticcacaulis excentricus CB 48] gi|315418049|gb|ADU14689.1| Serine-type D-Ala-D-Ala carboxypeptidase [Asticcacaulis excentricus CB 48] Length = 464 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 145/245 (59%), Gaps = 1/245 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V D P PASLTK+MT Y+ F + + + IT+S +A+ PP+ Sbjct: 61 VVDAQSGEVFYAMRADSPRYPASLTKIMTLYMAFEEMAQGRLKPDDVITLSAHAASMPPT 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + G T+T+D A++L+ SAND+A A+ E + +E++F M ++ LG++ ++F Sbjct: 121 KSGLRAGDTITVDMAMRLIAAYSANDLAAALGEHIGGSEQRFAALMTVKAQELGMTRSNF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ ++ARD A+L+ + DFPQY YF ++ ++ G+ Y N N + + G Sbjct: 181 VNASGLPDSRQVSSARDFAVLARAVMRDFPQYYEYFHVRSVQFNGRTYSNHNPLL-AYPG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DGMKTGF A+G+N+VAS +G+ LIAV+LG ++ R + SL++ GF R K Sbjct: 240 VDGMKTGFINAAGYNLVASQRKGNHRLIAVMLGGSNKAQRREHVTSLMNTGFDVFARRDK 299 Query: 273 INYII 277 I+ Sbjct: 300 GEQIV 304 >gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] Length = 435 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 140/250 (56%), Gaps = 4/250 (1%) Query: 17 FPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 P+L + P Y ++D N+G ++ + D P PAS+TK+MT Y+ F L E + Sbjct: 35 IPYLQLNSAE--PKYAAIVIDANSGEMLYDKRADSPRYPASVTKVMTLYLTFEALSEGRL 92 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 LT + + A+ P+ G ++++D A++ + VKSAND+AVA+AE L +E +F Sbjct: 93 KLTDRVPFTARAAAQAPTKLGLPPGDSISVDEAIRAMTVKSANDVAVAMAERLGGSESRF 152 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 M + LG+ + F+NA G+ +TARD+AILS DFPQY YF IKG E Sbjct: 153 AALMTLRGQELGMRNSRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSIKGFE 212 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 +G+ N + G DG+KTG+T ASG+N+ SA++ + LIAV+LG R+ Sbjct: 213 FRGRYIAGHNRLLTNMPGFDGLKTGYTNASGYNLAGSAVRDGRRLIAVVLGGSSTAWRDN 272 Query: 255 VSASLLSMGF 264 LL+ GF Sbjct: 273 NMEDLLTTGF 282 >gi|149203254|ref|ZP_01880224.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. TM1035] gi|149143087|gb|EDM31126.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. TM1035] Length = 465 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 145/251 (57%), Gaps = 6/251 (2%) Query: 16 IFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 I P ++A PY L +D G V+ N D +PASLTK+MT YVVF ++ + Sbjct: 4 IVPLSAVAA----PYAALVMDARNGEVLYSNNADTRLHPASLTKMMTLYVVFEAIENGEI 59 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L + ISK+A+ PPS + GS++ L ++ VKSAND A A+ E++ +E +F Sbjct: 60 GLDDKVVISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSEAQF 119 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN T++ LG++ T F NAHG+ ++GH +TARDM IL + DFPQY + F + Sbjct: 120 ARRMNRTAEALGMTRTTFKNAHGLTENGHLSTARDMTILGRHLFYDFPQYYNLFSRITTD 179 Query: 195 IKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +TN + + GADG+KTG+T A+GFN+ ASA + + +IA + G +RN Sbjct: 180 AGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTASRN 239 Query: 254 KVSASLLSMGF 264 A LL +GF Sbjct: 240 AKVAELLDLGF 250 >gi|302382572|ref|YP_003818395.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas subvibrioides ATCC 15264] gi|302193200|gb|ADL00772.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas subvibrioides ATCC 15264] Length = 514 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/257 (37%), Positives = 148/257 (57%), Gaps = 8/257 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + D PAS+TK+MT Y+VF L++ L IT+S A+ PPS Sbjct: 47 VVDAGTGEVLFARHADSQRYPASVTKMMTLYLVFEALEKGTVHLDDVITVSPLAASQPPS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+ LD+A++ V+SAND+A+ +AE + ++ +F ++ LG+ T + Sbjct: 107 KLGLAAGQTIRLDDAMRATTVRSANDMAMVLAEHIGGSQARFAALATLKAQELGMGQTRY 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ T+ARD+AILS I D+PQY YF I +G++Y NTN G LG Sbjct: 167 VNPNGLPDSRQLTSARDLAILSRAIMRDYPQYYSYFGIHDWTYQGREYRNTN---GLLLG 223 Query: 213 A---DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTGFT ASG+N+ ASA++G + +I ++LG TRN A+L+ GF +T Sbjct: 224 GNGYDGIKTGFTNASGYNLAASAVRGGKRVITIVLGGRSSITRNAHVAALMDTGFEVETR 283 Query: 270 RKKINYI--IKDFYQQN 284 R I + F++Q Sbjct: 284 RAAGERIEEAQTFFEQR 300 >gi|39936213|ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39650068|emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas palustris CGA009] Length = 585 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 143/244 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++ASE P+ Sbjct: 61 IVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHASEQAPT 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG+S T + Sbjct: 121 KLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALGMSRTVY 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD +IL I+ FP+Y YF +G N N +G G Sbjct: 181 RNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRLLGNVEG 240 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 241 VDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRT 300 Query: 273 INYI 276 + I Sbjct: 301 VAAI 304 >gi|254472024|ref|ZP_05085425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp. JE062] gi|211959226|gb|EEA94425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp. JE062] Length = 352 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 159/289 (55%), Gaps = 8/289 (2%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + + S+A + P LL+ +T V+ PW PAS TKLMTA V F L ++ Sbjct: 19 LISYGSLAPASATPSL-LLNLDTQSVLYAEDAGDPWYPASTTKLMTALVTFEALANREID 77 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 T + +S A S K GS MTL +A+ ++V SAND+AVA+AES+ +E+ FV Sbjct: 78 HETSVVMSPWAMRQASLKSGLKVGSVMTLQDAIYAVLVGSANDVAVALAESVAGSEEAFV 137 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 Q MN T++ LG++A+HF NA+G+ T+ARD+A+L+ I +PQY F + I Sbjct: 138 QRMNATARRLGMTASHFANANGLFDATQQTSARDLAVLAREIYLGYPQYHDVFATSKVTI 197 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 GK + N + G GMKTGF C+SG NIVA +G Q +AV+LGA R++ Sbjct: 198 DGKAITSFNELLTRLPGTVGMKTGFVCSSGRNIVALTDRGGQRYMAVVLGATTGRERSER 257 Query: 256 SASLLSMGFYNK--TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 +A LL+ + + +++ I D +Q ++ + +CT+Q + Sbjct: 258 AAKLLTEAMTGELGPNGQQLEDIANDLQRQP-----EDMRKRICTSQSK 301 >gi|192291929|ref|YP_001992534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192285678|gb|ACF02059.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 585 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 143/244 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++ASE P+ Sbjct: 61 IVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHASEQAPT 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG+S T + Sbjct: 121 KLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALGMSRTVY 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD +IL I+ FP+Y YF +G N N +G G Sbjct: 181 RNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRLLGNVEG 240 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 241 VDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRT 300 Query: 273 INYI 276 + I Sbjct: 301 VAAI 304 >gi|85707408|ref|ZP_01038489.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. 217] gi|85668064|gb|EAQ22944.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. 217] Length = 480 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 141/233 (60%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ N D +PASLTK+MT YVVF ++ + L + ISK+A+ PPS Sbjct: 38 VMDARSGEVLYSNNADTRLHPASLTKMMTLYVVFEAIENGEIGLDDKVLISKHAASEPPS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GS++ L ++ VKSAND A A+ E++ +E +F + MN T+++LG+S T F Sbjct: 98 KLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSEAQFARRMNRTAESLGMSRTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFL 211 NAHG+ ++GH +TARDM+IL + DFPQY + F + +TN + + Sbjct: 158 KNAHGLTENGHLSTARDMSILGRHLFYDFPQYYNLFSRITTDAGVTSVSHTNRRLLEAYR 217 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG+T A+GFN+ ASA + + +IA + G +RN A LL +GF Sbjct: 218 GADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTASRNAKVAELLDLGF 270 >gi|91977526|ref|YP_570185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91683982|gb|ABE40284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 578 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 145/251 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + PD +PASLTK+MT Y++F L++ K L + + +S++AS P+ Sbjct: 60 IVDANTGATLTATNPDALRHPASLTKIMTLYMLFERLEQGKLQLDSEMEVSEHASSQAPT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG+S T + Sbjct: 120 KLGLRPGQSLRVEDAIKGLVTRSANDAAVVIAETVGGSETDFAKMMTRKARALGMSRTVY 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD +IL I+ FP+Y YF +G N N +G G Sbjct: 180 RNASGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATASFNYRGNSIRNHNRLLGNVEG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ ++R+ Sbjct: 240 VDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKASNRRT 299 Query: 273 INYIIKDFYQQ 283 + I++ Q Sbjct: 300 VAAIVERSPSQ 310 >gi|56698478|ref|YP_168853.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria pomeroyi DSS-3] gi|56680215|gb|AAV96881.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria pomeroyi DSS-3] Length = 477 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/273 (35%), Positives = 143/273 (52%), Gaps = 10/273 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F I +A LS + PY + +D TG V+ D +PASLTK+MT Sbjct: 18 FFAIWMIAALSGV--------ARAAPYAAMVIDARTGEVLHATNADTRLHPASLTKMMTL 69 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F ++ + + T + I A++ PPS + G + ++ VKSAND A + Sbjct: 70 YIAFEAVRNGELTMDTQVRIDPFAAKEPPSKLGLRAGQKIAFRYLVRAAAVKSANDAATS 129 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 I ++ +E F + MN T+K LG++ T F NAHG+ + GH +TARDM L + D+P Sbjct: 130 IGIAISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTESGHLSTARDMTTLGRHLLYDYP 189 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 QY + F + K NTN + + GADG+KTG+T A+GFN+VASA +GD+ +IA Sbjct: 190 QYYNLFSRRETSAGIKTVANTNRRLLDAYQGADGIKTGYTQAAGFNLVASAKRGDERVIA 249 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + G RN A LL +GF R I Sbjct: 250 TVFGGKSSTARNAKVAELLDLGFRKAPSRAPIR 282 >gi|170740496|ref|YP_001769151.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168194770|gb|ACA16717.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 503 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 136/228 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D +PAS+TK+MT Y++F L+ K L TP+ IS NA+ PS Sbjct: 52 VVDVKSGRVLHAVNEDALRHPASITKVMTLYLLFEQLERGKMSLDTPLEISANAARQAPS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GST+T++ A+K L+ KSAND+A AI E++ +E F + M + LG+S TH+ Sbjct: 112 KLGLRPGSTITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMSRTHY 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD+ +L+ I+ FP+Y YFQ + +G+ N N +G G Sbjct: 172 ANASGLPDSDQITTARDLTVLARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGRVEG 231 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SGFN++ SA D+ ++AV+LG +R+ + L+ Sbjct: 232 VDGIKTGYTRDSGFNLMTSARLADRHIVAVVLGGKSVASRDAIMTRLV 279 >gi|148256123|ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146408296|gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1] Length = 590 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 142/244 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G V+ PD +PASLTK+MT Y++F L K L T + +S++ASE P+ Sbjct: 63 VVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQSPT 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV IAE++ E +F + M ++ LG+S T + Sbjct: 123 KLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALGMSRTTY 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARD +IL I+ FP+Y YF +G+ N N +G G Sbjct: 183 VNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGNVEG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 243 IDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRT 302 Query: 273 INYI 276 + I Sbjct: 303 VAAI 306 >gi|83941609|ref|ZP_00954071.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. EE-36] gi|83847429|gb|EAP85304.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. EE-36] Length = 502 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 150/265 (56%), Gaps = 6/265 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLM 60 R L I+A + I P ++A PY ++D TG V+ D +PASLTK+M Sbjct: 10 RYGLFILAAIWILLILPLSAMAA----PYAAYVIDARTGEVLHSRNADTRLHPASLTKMM 65 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F +K + L + + I+ +A+ PPS K G T+ L ++ VKSAND A Sbjct: 66 TLYIAFEAIKRGEISLDSKVKITSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAA 125 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI E++ +E KF + MN T+K LG++ T F NAHG+ + GH +TA DM I+ + D Sbjct: 126 TAIGEAIEGSEAKFARRMNRTAKALGMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYD 185 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+Y + F + +K +TN + ++ GADG+KTG+T A+GFN+ ASA +G++ + Sbjct: 186 HPEYYNLFSRITADAGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLTASAERGNERI 245 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I + G + RN A L+ +GF Sbjct: 246 IVTVFGGTSTSARNAKVAELMDLGF 270 >gi|312113074|ref|YP_004010670.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium vannielii ATCC 17100] gi|311218203|gb|ADP69571.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium vannielii ATCC 17100] Length = 367 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 10/297 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + TG V+ D PW PASLTKLMTAY+ F +++ + +T + + PPS Sbjct: 33 LTEPATGLVLYAEDADLPWRPASLTKLMTAYLTFEAIRDGRLSPEDMLTSTALSRSQPPS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G+ + +D A+K LIVKSAND+A+ +AE + + + FV MN T+K LG++ T F Sbjct: 93 KFGLPLGAQIKVDLAIKALIVKSANDVAIMLAEKIGGSSEAFVDQMNRTAKRLGMTNTKF 152 Query: 153 MNAHGVVQ---------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +N +G+ Q TTARDMA+LS I +FPQY F + + + + + Sbjct: 153 VNPNGLPQFNPDGTETPEQAVTTARDMALLSNMILKEFPQYTPIFSMTEVRVGNRLLTSH 212 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + ++ GADGMKTGF CA+G+N+VASA + + L+AV+LG R +A+L G Sbjct: 213 NGILKSYDGADGMKTGFVCAAGYNVVASATRNGRQLVAVVLGERSSGARTIRAAALFEHG 272 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESH 319 F + + + + + P ++ VC+ +K ++ + K + H Sbjct: 273 FEIYPWKAVLAPTLATWPVETPEGAQPADMRGIVCSGRKPAVSAKQKSKRPASQPGH 329 >gi|323136415|ref|ZP_08071497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] gi|322398489|gb|EFY01009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] Length = 592 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 143/258 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G + +PAS+TK+MT Y++F L++ K L +P+ IS +A+ PS Sbjct: 93 VVDGNSGKTLYARNEHELRHPASVTKVMTLYLLFEQLEKGKLRLDSPLMISSHAAAQAPS 152 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++++NA+K ++ KSANDIA AIAE++ E F Q M + LG+ TH+ Sbjct: 153 KLGLRPGETISVENAIKAVVTKSANDIACAIAENIGGDEHTFAQMMTRKAHALGMRNTHY 212 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G TTA D+A+L I+ FP+Y YF G + N N +G G Sbjct: 213 ENASGLPDPGQITTAYDLAVLGRAIQDRFPRYYRYFSTHSFAYNGALHRNHNHLLGQVEG 272 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN++ S +G+ ++AV++G R+++ A L+ + Sbjct: 273 MDGIKTGYTRASGFNLLTSVRRGNHHIVAVVMGGATAGGRDRIMAGLIEDNIGGGASIRT 332 Query: 273 INYIIKDFYQQNLSNEVP 290 I +D + L+ E P Sbjct: 333 AAAITEDSAAEQLAEESP 350 >gi|296447357|ref|ZP_06889284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296255136|gb|EFH02236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 552 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 139/230 (60%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + +PAS+TK+MT Y++F L++ + L +P+ IS +A+ P+ Sbjct: 86 VVDANTGRTLYGRSENELRHPASITKVMTLYLLFEQLEKGRLRLDSPLVISAHAAAQSPT 145 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+ ++NA+K ++ KSANDIAVAIAE++ E F + M + +LG++ TH+ Sbjct: 146 KLGLPPGQTIDVENAIKAVVTKSANDIAVAIAENIAGDEDAFAELMTRKAHSLGMTRTHY 205 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD+A+L I+ FP Y YF +G+ + N N +G G Sbjct: 206 ANASGLPNDAQITTARDLAVLGRAIQDRFPHYYRYFSTYSFTYRGQAHRNHNHLLGQIEG 265 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG+T ASGFN+++S +G + ++AV+LG +R+ + A L++ Sbjct: 266 VDGIKTGYTRASGFNLLSSVRRGGRHIVAVVLGGTSGPSRDHIMAGLIAQ 315 >gi|304394240|ref|ZP_07376163.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130] gi|303293680|gb|EFL88057.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130] Length = 412 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 + LP+ ++ D ++G V++ W+PASLTKLMTA V F ++ + P+ +S N Sbjct: 20 HALPHISV-DLDSGRVLSAQQAFDLWHPASLTKLMTALVAFRAIESGRLTADHPVIVSDN 78 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A + PPS + +G+TM L++ALKLL++KSANDI++A+AES+ + F Q MN + L Sbjct: 79 ARKAPPSKMGYSRGTTMRLEDALKLLLIKSANDISIALAESVSGSVPAFSQAMNAEAARL 138 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------ 199 G++ ++F+N HG+ TTARDMAIL + +PQY L + Sbjct: 139 GMTGSNFVNPHGLHDRRQVTTARDMAILLRVLHKQYPQYKAMLSTPSLLAPSRTKNGKTI 198 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 Y + N + F GADG KTGF CASG+N +A + + + A++LG + +R + Sbjct: 199 QRVYYSYNLLLERFRGADGFKTGFVCASGYNFAGAATRSGRRIAAIVLGRDGQTSRAVDA 258 Query: 257 ASLLSMGFYNKT 268 A L+ GF T Sbjct: 259 AKLIEEGFRLPT 270 >gi|260574206|ref|ZP_05842211.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] gi|259023672|gb|EEW26963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] Length = 548 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/272 (35%), Positives = 147/272 (54%), Gaps = 3/272 (1%) Query: 22 IAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 ++ PY + +D TG I D +PASLTK++T Y+ F ++ + L T + Sbjct: 24 VSPAGAAPYAAIVIDARTGETIYAKNADTRLHPASLTKMLTLYITFGAIERGEISLDTMV 83 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 T+SK+A+ PPS + G + L ++ +KSAND A AI E++ +E KF + MN Sbjct: 84 TVSKHAASEPPSRLGLRAGQKIALRYLIRAAAIKSANDAATAIGEAVGGSEAKFAERMNR 143 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 T+K LG+ + F NA+G+ GH +TARDM L + DFPQY + F + + + Sbjct: 144 TAKALGMRNSTFRNANGLTTPGHMSTARDMTTLGRHLFYDFPQYYNIFSRRSSDAGVAEV 203 Query: 201 PNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + + GADG+KTG+T +GFN+ ASA +G++ +IA I G RN A L Sbjct: 204 ANTNRRFLDMYEGADGIKTGYTAPAGFNLTASAQRGNKRIIATIFGGTSTAMRNAKMAEL 263 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 L +GF + + YQ + + E P+ Sbjct: 264 LDLGFASAPANAAVQAPAAPGYQADPA-EAPD 294 >gi|146329552|ref|YP_001209791.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus VCS1703A] gi|146233022|gb|ABQ14000.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus VCS1703A] Length = 375 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/268 (37%), Positives = 149/268 (55%), Gaps = 3/268 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G ++AE D PAS+TKLMTAYV F+ LK K LT +TIS NA Sbjct: 33 YLLMDAQSGQILAERAADERLPPASITKLMTAYVTFNALKTGKIHLTDLVTISANARAQN 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + S +++++ L+ +IV+S ND +VA+AE + T FV MN T+K L L T Sbjct: 93 GSRMFVEVNSQVSVNDLLQGMIVQSGNDASVALAEYIGGTVAGFVHMMNATAKQLDLQKT 152 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ N G+ H++TA D+A L+ + DFP++ H++Q K K PN N + Sbjct: 153 HYQNPTGMPDEQHFSTAHDIARLAQALIRDFPEFYHFYQQKEFTWNNIKQPNRNRLLWRN 212 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG+T A+G+ + AS +GD LI V+LGA R + +LL+ GF N T Sbjct: 213 QNVDGLKTGYTDAAGYCLAASEKRGDWRLIGVVLGAEKEAQRYDAAENLLNFGFANYTQV 272 Query: 271 KKI---NYIIKDFYQQNLSNEVPNISEE 295 + +++ + L EVP ++E Sbjct: 273 TALRAEQVLLRGKVYKGLEAEVPIVAER 300 >gi|83855085|ref|ZP_00948615.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. NAS-14.1] gi|83842928|gb|EAP82095.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. NAS-14.1] Length = 473 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 29 PYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY ++D TG V+ D +PASLTK+MT Y+ F +K + L + + I+ +A+ Sbjct: 4 PYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIKRGEISLDSKVKITSHAA 63 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS K G T+ L ++ VKSAND A AI E++ +E KF + MN T+K LG+ Sbjct: 64 SEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKALGM 123 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 + T F NAHG+ + GH +TA DM I+ + D P+Y + F + +K +TN Sbjct: 124 TNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYNLFSRITADAGVRKVSHTNRRF 183 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + ++ GADG+KTG+T A+GFN+ ASA +G++ +I + G + RN A L+ +GF Sbjct: 184 LSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGTSTSARNAKVAELMDLGF 241 >gi|163797884|ref|ZP_02191828.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] gi|159176846|gb|EDP61414.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] Length = 421 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 1/296 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + L I + +L P + AE +LD +TG ++ E +PASLTK+MT Sbjct: 9 RILATIVLGLLWLAAPSMGRAEVTAKYAALVLDADTGTILFERQAAAERHPASLTKIMTL 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ K L + +S A+ PS + G ++ +A+ L+ KSAND+AV Sbjct: 69 YMLFDAIEHGKISLNQRLKVSARAAGQAPSKLGLQPGDSIRAKDAILALVTKSANDVAVV 128 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE+L +TE +F + M + ++ LG+ T F NA G+ +TA DMA+L+ I+ DFP Sbjct: 129 VAEALGETEPRFARLMTDRARRLGMRNTTFRNASGLHHPNQISTAYDMAMLALAIRRDFP 188 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + YF + G++Y N N +G + G DG+KTG+ ASGFN+VAS + + LI V Sbjct: 189 KEYAYFSTRSFSWGGREYGNHNKLLGHYEGTDGIKTGYIGASGFNLVASVERNGRRLIGV 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 + G R++ LL+ GF K D ++ +++ EV S E + Sbjct: 249 VFGGRSGPLRDRHMKRLLTSGF-EKADEIRVAHVVPPIPHPRPEREVQLASVETAS 303 >gi|86749513|ref|YP_486009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86572541|gb|ABD07098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 573 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 143/246 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG ++ PD +PASLTK+MT Y++F L+ K L + + +S +AS P+ Sbjct: 57 IVDANTGATLSATNPDAVRHPASLTKIMTLYLLFERLEAGKLSLDSEMEVSAHASSQAPT 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV IAE++ +E +F + M ++ LG+S T + Sbjct: 117 KLGLRPGQTLRVEDAIKALVTRSANDAAVVIAETVGGSEAEFARMMTRKARALGMSRTVY 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N++G+ TTARD +IL I+ FP+Y YF +G N N +G G Sbjct: 177 RNSNGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATTTFNYRGASIRNHNRLLGNVEG 236 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 237 VDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRT 296 Query: 273 INYIIK 278 + I++ Sbjct: 297 VAAIVE 302 >gi|114799142|ref|YP_759747.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] gi|114739316|gb|ABI77441.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] Length = 442 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 137/232 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ D P PASLTK+MT Y++F + L I +S+NA+ PPS Sbjct: 39 VVDADSGEVLHARNQDDPRYPASLTKVMTLYLLFDAIDAGDVSLKDKIKVSRNAAAQPPS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G T+T+++A+ L KSAND+A A+AE L +E+KF M + +++LGLS T F Sbjct: 99 NLRLRAGDTITVEDAIYALTTKSANDVAAAVAEFLGGSERKFAAMMTDKARDLGLSNTTF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +TARD+AIL+ + + Y HYFQ + G Y + N +G+ G Sbjct: 159 RNASGLPDTAQLSTARDLAILADALLDNHEPYYHYFQNQRFSWGGMTYKSHNNLIGSVDG 218 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T ASGFN++ SA + + +IA++LG +R+ L+ F Sbjct: 219 VDGIKTGYTRASGFNLMTSAERDGRRVIAIVLGGASAKSRDAHVTELVESAF 270 >gi|187476650|ref|YP_784673.1| penicillin-binding protein [Bordetella avium 197N] gi|115421236|emb|CAJ47741.1| penicillin-binding protein [Bordetella avium 197N] Length = 419 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 141/236 (59%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + +D N+G V+A + PD PASLTK+MTAYVVF+ L EK+ L + +S++A Sbjct: 77 WIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQQVPVSQHAWRTG 136 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D ++ +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 137 GSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALMNEQAERLGMKGT 196 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G+ H TT RD+A L+ + +D P+Y HY++ KG PN N + Sbjct: 197 HFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKITQPNRNRLLWAD 256 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ ++++A++GD+ ++ V++GA TR + S LL+ F N Sbjct: 257 PSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLKLLNWSFQN 312 >gi|146341457|ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146194263|emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS278] Length = 586 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 138/229 (60%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G + PD +PASLTK+MT Y++F L K L T + +S++ASE P+ Sbjct: 62 VVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQSPT 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV IAE++ E +F + M +++LG+S T + Sbjct: 122 KLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLGMSRTTY 181 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARD +IL I+ FP+Y YF +G+ N N +G G Sbjct: 182 VNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGNVEG 241 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +LL+ Sbjct: 242 IDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLA 290 >gi|13474143|ref|NP_105711.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14024895|dbj|BAB51497.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 304 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 131/221 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + E PASLTK+MT Y++F ++ + T I +S +A+ PP+ Sbjct: 56 VVDVKTGKQMFEVNSTAQRYPASLTKMMTLYLLFEAMESGRVTKETQIPVSDHAASQPPT 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F++G T+ +D+A++ ++VKSAND+AVA+ E L +E +F M + +++LG+++T F Sbjct: 116 KMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDRFAAMMTSKARSLGMTSTTF 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G TTARDMA+L ++ FPQ+ HYF +G+ N +G G Sbjct: 176 RNASGLPDDGQMTTARDMAVLGMALRQRFPQHFHYFSESDFMFRGRLVRGHNDMLGRVRG 235 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ ASGFNIV S + LI V++GA RN Sbjct: 236 VDGIKTGYIRASGFNIVTSYNADGRQLIVVVMGADSARQRN 276 >gi|310815390|ref|YP_003963354.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare Y25] gi|308754125|gb|ADO42054.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare Y25] Length = 314 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 145/264 (54%), Gaps = 11/264 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 +I+ AM+S+ F PY L +D TG V+ D +PASLTK+MT Y Sbjct: 15 FIILCAAMMSHAF---------AAPYAALVMDARTGQVLDSENADTRLHPASLTKMMTLY 65 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ + L + +T+S NA+ PPS + G + L ++ +KSAND A AI Sbjct: 66 IAFQAIERGEVSLNSQVTVSANAAAQPPSRLGLRAGQRIELQYLIRAAAIKSANDAATAI 125 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 + +E+ F MN T++ +G++ THF++ +G+ +GHY+TARDM IL + DFPQ Sbjct: 126 GVGISGSEEAFAARMNATARAMGMNNTHFISMNGLTTNGHYSTARDMTILGRHLIYDFPQ 185 Query: 184 YMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + + TN + + GADG+KTG+T A+G+N+ ASA +G+ +IA Sbjct: 186 YYNLFSRRSADAGIATVRTTNSRLLDNYQGADGIKTGYTQAAGYNLTASAERGNVRIIAT 245 Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266 + GA R+ L+ GF N Sbjct: 246 VFGATSNADRHTRITRLMDRGFAN 269 >gi|319780264|ref|YP_004139740.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166152|gb|ADV09690.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 295 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 137/247 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + E PASLTK+MT Y++F L+ + T I +S +A+ PP+ Sbjct: 48 VVDARTGKQLFEVSSTAQRYPASLTKMMTLYLLFEALESGRVSKQTQIPVSDHAASQPPT 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F++G ++ +D+A++ ++VKSAND+AVA+ E L +E +F M + ++ LG+++T F Sbjct: 108 KMRFRRGESIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAMMTSKARQLGMTSTTF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G TTARDMA+L + FPQ HYF +G+ N +G G Sbjct: 168 RNASGLPDDGQMTTARDMAVLGMALHQRFPQQFHYFSESDFMFRGRLVRGHNDMLGRVRG 227 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+ ASGFNIV S ++LI V++GA RN +L+ TD K Sbjct: 228 VDGIKTGYIRASGFNIVTSYNADGRNLIVVVMGADSARQRNDHVEALIQRSLSPTTDGAK 287 Query: 273 INYIIKD 279 + + Sbjct: 288 TRLMFAE 294 >gi|126463103|ref|YP_001044217.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|126104767|gb|ABN77445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] Length = 474 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 151/279 (54%), Gaps = 15/279 (5%) Query: 1 MRQFL-VIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +RQ L V +AM M + P+ +I ++D TG + E + +PASL Sbjct: 9 VRQVLFVFVAMVMAAQSAVAAPYAAI----------VMDARTGETLYETNSETRLHPASL 58 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT Y+ F ++ + L + +T++KNA+ PPS K G + L ++ VKSA Sbjct: 59 TKMMTLYITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSA 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A AI E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R Sbjct: 119 NDAATAICEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRR 178 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQG 235 + DFPQY + F + + NTN + + GADG+KTG+T +G+N+ ASA +G Sbjct: 179 LFFDFPQYYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRG 238 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ +IA + G RN A LL +GF + K+ Sbjct: 239 NKRIIATVFGGKSTAHRNAKMADLLDLGFREAPENAKVR 277 >gi|77464261|ref|YP_353765.1| penicillin-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77388679|gb|ABA79864.1| Probable penicillin-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 501 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 151/279 (54%), Gaps = 15/279 (5%) Query: 1 MRQFL-VIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +RQ L V +AM M + P+ +I ++D TG + E + +PASL Sbjct: 36 VRQVLFVFVAMVMAAQSAVAAPYAAI----------VMDARTGETLYETNSETRLHPASL 85 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT Y+ F ++ + L + +T++KNA+ PPS K G + L ++ VKSA Sbjct: 86 TKMMTLYITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSA 145 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A AI E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R Sbjct: 146 NDAATAICEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRR 205 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQG 235 + DFPQY + F + + NTN + + GADG+KTG+T +G+N+ ASA +G Sbjct: 206 LFFDFPQYYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRG 265 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ +IA + G RN A LL +GF + K+ Sbjct: 266 NKRIIATVFGGKSTAHRNAKMADLLDLGFREAPENAKVR 304 >gi|316933618|ref|YP_004108600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315601332|gb|ADU43867.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 576 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 144/246 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G V++ PD +PASLTK+MT Y++F L++ K L + + +S+ AS P+ Sbjct: 60 IVDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEFASGQAPT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++A+K L+ +SAND AV IAE++ +E +F + M ++ LG+S T + Sbjct: 120 KLGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARALGMSRTVY 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD +IL ++ FP+Y YF +G+ N N +G+ G Sbjct: 180 RNASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNRLLGSVEG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 240 VDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRT 299 Query: 273 INYIIK 278 + I + Sbjct: 300 VAAITE 305 >gi|220920397|ref|YP_002495698.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219945003|gb|ACL55395.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 498 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 136/228 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ D +PAS+TK+MT Y++F L+ + L TP+ IS NA+ PS Sbjct: 52 VVDVKSGRILHAVNEDALRHPASITKVMTLYLLFEQLERGRMSLDTPLEISANAARQAPS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G+T+T++ A+K L+ KSAND+A AI E++ +E F + M + LG++ TH+ Sbjct: 112 KLGLRPGATITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMTRTHY 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD+ IL+ I+ FP+Y YFQ + +G+ N N +G G Sbjct: 172 ANASGLPDSDQITTARDLTILARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGRVEG 231 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SGFN++ SA D+ ++AV+LG +R+ + L+ Sbjct: 232 VDGIKTGYTRDSGFNLMTSARINDRHIVAVVLGGKSVASRDAIMTRLV 279 >gi|114705796|ref|ZP_01438699.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114538642|gb|EAU41763.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 356 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 132/232 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ HPW PAS TKLM+AYV F L+ + L TP+TISK A Sbjct: 32 VVDAGTRAVLFAEEAGHPWYPASTTKLMSAYVTFEALRAGEVSLDTPVTISKRAMTEASL 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ G M L++AL ++V SAN++++++AE + + + F MN T+ LG++AT F Sbjct: 92 HAGLSAGRAMRLEDALFAMVVGSANEVSISLAERVAGSVEAFAARMNATAARLGMTATRF 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ +TTARD+A+L DFP+Y F + I GKK N + F G Sbjct: 152 DNPNGLFAASQHTTARDLALLGLAATRDFPEYRELFTTSIVVIDGKKLETENVLLTDFPG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGF CASG N+VA A + + ++ V+LGA R + +A L+S F Sbjct: 212 TLGLKTGFLCASGRNLVAMAERDGRRILVVLLGATTGRERAERAAKLMSEAF 263 >gi|163760868|ref|ZP_02167947.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43] gi|162281912|gb|EDQ32204.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43] Length = 441 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 140/246 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + D PASLTK+MT Y+VF L+++K L T I S NA++ PP+ Sbjct: 25 VVDAKTGKTLYAYNADQLRFPASLTKMMTLYMVFEALEQRKIKLNTRIVFSANAAKEPPT 84 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G ++T++ A+ L+ KSAND + A+AE L +E KF + M +++LG+S T F Sbjct: 85 KLGVGTGKSITVEQAIYALVTKSANDASTAVAEHLGGSEAKFARMMTAKARSLGMSRTTF 144 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NAHG+ TTARDMA L ++ FP+ YF + + + N N +GT G Sbjct: 145 RNAHGLPNSKQVTTARDMARLGIALREHFPRQYKYFATRSFKFGKTRLSNHNRLLGTVRG 204 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V+S + ++S++AV++G +RN L++ + R Sbjct: 205 VDGIKTGYTRASGFNLVSSVVDRNRSIVAVVMGGRTGASRNAQMKKLIAGYLSKASTRGS 264 Query: 273 INYIIK 278 N I + Sbjct: 265 GNLIAR 270 >gi|221640145|ref|YP_002526407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides KD131] gi|221160926|gb|ACM01906.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter sphaeroides KD131] Length = 463 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 2/248 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG + E + +PASLTK+MT Y+ F ++ + L + +T++KNA+ Sbjct: 19 PYAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQAIQRGEISLDSLVTVTKNAA 78 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS K G + L ++ VKSAND A AI E++ +E F + MN T+K +G+ Sbjct: 79 AEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGGSEAAFAERMNRTAKAIGM 138 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 + T F N +G+ GH +TA DM +L R+ DFPQY + F + + NTN Sbjct: 139 TKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIFSRRRADAGVTTVANTNTRF 198 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T +G+N+ ASA +G++ +IA + G RN A LL +GF Sbjct: 199 LDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGKSTAHRNAKMADLLDLGFRE 258 Query: 267 KTDRKKIN 274 + K+ Sbjct: 259 APENAKVR 266 >gi|150396261|ref|YP_001326728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150027776|gb|ABR59893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 494 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 129/221 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D PASLTK+MT Y+ F L+ + +TP+ SK AS PPS Sbjct: 56 VVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRINKSTPVPFSKKASAEPPS 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++T++ A+ L+ +SAND A A+AE L +E++F + M N ++ LG++ T + Sbjct: 116 KLGVRAGRSITVEQAILSLVTRSANDSATALAELLGGSEQRFARMMTNKARALGMTRTTY 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NAHG+ TTARD A L ++ FPQY YF + + N N +G G Sbjct: 176 RNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRG 235 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+T ASGFN+V SA G +S++AV++G +R+ Sbjct: 236 VDGIKTGYTRASGFNLVTSAQLGGRSIVAVVMGGTSGGSRD 276 >gi|332559150|ref|ZP_08413472.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] gi|332276862|gb|EGJ22177.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] Length = 463 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 2/248 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG + E + +PASLTK+MT Y+ F ++ + L + +T++KNA+ Sbjct: 19 PYAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQAIQRGEISLDSLVTVTKNAA 78 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS K G + L ++ VKSAND A AI E++ +E F + MN T+K +G+ Sbjct: 79 AEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGGSEAAFAERMNRTAKAIGM 138 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 + T F N +G+ GH +TA DM +L R+ DFPQY + F + + NTN Sbjct: 139 TKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIFSRRRADAGVTTVANTNTRF 198 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T +G+N+ ASA +G++ +IA + G RN A LL +GF Sbjct: 199 LDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGKSTAHRNAKMADLLDLGFRE 258 Query: 267 KTDRKKIN 274 + K+ Sbjct: 259 APENAKVR 266 >gi|217976936|ref|YP_002361083.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502312|gb|ACK49721.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 614 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 147/258 (56%), Gaps = 1/258 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G + D P +PAS+TK+MT Y++F L++ + L + I IS A+ P+ Sbjct: 84 VVDGNSGEALYARNEDEPRHPASITKVMTLYLLFEQLEQGRLRLDSEIPISARAAAQKPT 143 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+++D+A+K ++ +SANDIAVAIAE++ E +F M ++ LG+ T + Sbjct: 144 KLGLRPGRTISVDDAIKAIVTRSANDIAVAIAEAVGGDEDRFADLMTRKARELGMRNTKY 203 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARD++IL ++ FP+Y YF + G N N + G Sbjct: 204 VNASGLPADAQITTARDLSILGRAVQERFPRYYRYFSTRTFYFAGAAIRNHNRLMDRVEG 263 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN++ S + ++AV++G + +R+++ A L+ N + Sbjct: 264 MDGIKTGYTNASGFNLLTSVKRDGHYIVAVVMGGVSAPSRDRIMADLIEDQIGNGATVRT 323 Query: 273 INYIIKDFYQQNLSNEVP 290 + +++D Q+ + + P Sbjct: 324 AS-VLRDLPQRPVERDTP 340 >gi|90424819|ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90106833|gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 588 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 143/246 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G ++ N PD +PASLTK+MT Y++F L+ K L + + +S++AS P+ Sbjct: 60 IVDGNSGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSEMDVSEHASIQAPT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV I+E++ E F + M +++LG++ T + Sbjct: 120 KLGLRPGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMTKKARSLGMTRTVY 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD A L ++ FP+Y +F +G N N +G+ G Sbjct: 180 RNASGLPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNAIRNHNRLLGSVEG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +LL+ + R+ Sbjct: 240 VDGIKTGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNLLAANLDKASTRRT 299 Query: 273 INYIIK 278 + + + Sbjct: 300 VTAVAE 305 >gi|119384494|ref|YP_915550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] gi|119374261|gb|ABL69854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] Length = 568 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 1/237 (0%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D TG + D +PASLTK+MT Y+ F+ ++ + L + +S +A+ PPS Sbjct: 47 DARTGQEVYAQNADTRLHPASLTKMMTLYMAFNAIERGQVRLDSKFLVSSHAAAQPPSRL 106 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 K G + L ++ VKSAND A I E L +E KF M ++ LG+ T+F N Sbjct: 107 GLKPGQRIELRYLIRAAAVKSANDAATVIGEGLAGSEAKFAAQMTQMARALGMRNTNFRN 166 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGA 213 A+G+ GHY+TARDM +L R+ DFPQY F + + +TN + ++ GA Sbjct: 167 ANGLTAEGHYSTARDMTVLGRRLFYDFPQYYSIFSRRSADAGIATVASTNKRFLDSYEGA 226 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG+T A+GFN+ ASA +G + +IA +LG RN+V A LL GF R Sbjct: 227 DGIKTGYTRAAGFNLTASAKRGSKRIIATVLGGTSTAHRNQVMAQLLDAGFGKAPTR 283 >gi|115525408|ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] gi|115519355|gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] Length = 584 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 137/239 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG ++ N PD PASLTK+MT Y++F L+ K L + + +S++AS P+ Sbjct: 58 IVDGNTGATLSANNPDALRRPASLTKIMTLYLLFERLEAGKLSLDSEMDVSEHASIQAPT 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV IAE++ E F + M ++ LG++ T + Sbjct: 118 KLGLRPGQTLRVEDAIKALVTRSANDAAVVIAEAIGGDEDDFAKLMTKKARALGMTRTVY 177 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD A L I+ FP+Y YF KG N N +G+ G Sbjct: 178 RNASGLPNDDQITTARDQATLGRAIQERFPRYYRYFATSVFVYKGHAIRNHNRLLGSVEG 237 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 DG+KTG+T ASGFN+V+S +G++ LI V+LG +R+ SLL+ R+ Sbjct: 238 VDGIKTGYTRASGFNLVSSMRRGNRHLIGVVLGGRSGGSRDAAMRSLLAENLDKAATRR 296 >gi|114704888|ref|ZP_01437796.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506] gi|114539673|gb|EAU42793.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506] Length = 482 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 132/228 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N G V+ E+ D PASLTK+MT Y+ F L +K+ LT + +S+ A+ PP+ Sbjct: 38 VIDANNGKVLYEDRADEYRYPASLTKMMTLYLTFDALSKKRISLTDKMPVSRYAAGRPPT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+ ++ A+ L+ KSAND +V +AE L +E F + M T+ LG++ T + Sbjct: 98 KIGVPAGKTLQVEEAIYSLVTKSANDASVTLAEYLAGSESSFAEMMTRTAHKLGMTKTTY 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ G TTARD A L ++ FPQY YF + +G++ N N +G G Sbjct: 158 KNANGLPDSGQRTTARDQAKLGIALREHFPQYYKYFSTRSYSFRGRRLGNHNRVLGRMTG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+ ASGFN+V+S + +SL+AV++G +R+ LL Sbjct: 218 VDGIKTGYINASGFNLVSSIKRDGKSLVAVVMGGRSGRSRDNHMVDLL 265 >gi|254294362|ref|YP_003060385.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] gi|254042893|gb|ACT59688.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] Length = 322 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 141/260 (54%), Gaps = 6/260 (2%) Query: 6 VIIAMAM-LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +I A+A+ L I P A K Y ++D +T V+ D P PAS+TK+MT Y+ Sbjct: 14 LITALALSLCVIAP----ASAEKYASY-VIDIDTAKVLHSRNADDPRFPASITKVMTLYM 68 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 VF LK + MLT + IS+ AS+ PPS K G T++++ A+ L+ KSAND+AV IA Sbjct: 69 VFDALKAGELMLTDELKISREASKQPPSKLYLKPGETISVETAINALVTKSANDVAVVIA 128 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E L +E +F M ++ LGL T F NA G+ +TA D+AIL + D Y Sbjct: 129 ERLGGSETRFAALMTAKARQLGLKNTRFKNASGLPNAAQLSTAHDLAILGEAMLRDHADY 188 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF + Y N N + + G DG+KTG+T ASGFN++ASA + +IAV+L Sbjct: 189 YDYFSTTEFKYGRANYKNHNKLLESVRGVDGIKTGYTRASGFNLLASAERDGHRVIAVML 248 Query: 245 GALDRNTRNKVSASLLSMGF 264 G +RN LL F Sbjct: 249 GGATSKSRNAHVTDLLEAAF 268 >gi|254452232|ref|ZP_05065669.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter antarcticus 238] gi|198266638|gb|EDY90908.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter antarcticus 238] Length = 450 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 140/267 (52%), Gaps = 2/267 (0%) Query: 26 NKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 N PY + +D TG ++ D +PASLTK+MT Y+ F ++ + L ITI+ Sbjct: 10 NSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAIERGEISLDDMITITP 69 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ PPS G + ++ VKSAND A AI +L E F + M T++ Sbjct: 70 VAANEPPSKLGLVAGQRIQFRYLVRASGVKSANDAATAIGIALEGNEAAFARRMTATARA 129 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +G+S T F NAHG+ + GH +TARDM +L + DFPQY + F + ++ NTN Sbjct: 130 MGMSRTTFRNAHGLTESGHLSTARDMTVLGRHMIYDFPQYYNIFSRLTTDAGVRQVANTN 189 Query: 205 WA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + GADG+KTG+T A+GFN+VASA +G + +IA + G RN A LL MG Sbjct: 190 RRFLSAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGSSTAQRNARVAELLDMG 249 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVP 290 F IN Q + S + P Sbjct: 250 FARAPTTANINRPSPVPAQGSGSPDAP 276 >gi|49475404|ref|YP_033445.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49238210|emb|CAF27420.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 449 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/275 (37%), Positives = 146/275 (53%), Gaps = 5/275 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F + ++ TPI +S+NA+ PP+ Sbjct: 45 VIDANTGKTLFQANATLKRYPASLTKMMTLYLLFEAMHMRRVTPNTPILVSRNAATRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T++ A K LI +SAND+A AIAE L EKKF + M ++ LG+ THF Sbjct: 105 KLGLKTGQTISAQEAAKALITRSANDVATAIAEYLGGNEKKFARMMTAKARKLGMINTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TARDMA LS ++ FPQ F+IK G N V T G Sbjct: 165 ANASGLPDVRNYSTARDMATLSLALRKHFPQQYKLFKIKSFIFHGHTVNTHNKLVKTMKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T SG N+ S +S++AV++G R+K ASLLS + K R K Sbjct: 225 VDGIKTGYTQMSGSNLATSMRIEGRSIVAVVMGGKSSTARDKHMASLLSQ-YLPKASRMK 283 Query: 273 INYIIKDFYQQNLSN----EVPNISEEVCTTQKEI 303 + + NL N +P + + + EI Sbjct: 284 NDGRLMASAHYNLPNGAQTPIPPVKADPTDSDDEI 318 >gi|163859128|ref|YP_001633426.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella petrii DSM 12804] gi|163262856|emb|CAP45159.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella petrii] Length = 414 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 144/252 (57%), Gaps = 7/252 (2%) Query: 22 IAETNKLPYYTL-------LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 +AE + +P T+ +D ++G V+A PD PASLTK+MTAYVVF+ LKEK+ Sbjct: 56 VAELSSVPAPTIAARAWITIDASSGQVLAAANPDMQIEPASLTKIMTAYVVFNALKEKRI 115 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L + +S++A S + +T+D ++ +IV+S ND +VA+AE++ +E F Sbjct: 116 TLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSESAF 175 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN ++ LGL THFMNA G+ H TT D+A+LS + D P Y HY++ K Sbjct: 176 AALMNQEAERLGLKRTHFMNATGLPDPQHVTTVADLAVLSAALINDHPDYYHYYKQKEFT 235 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 PN N + DGMKTG T A+G+ +V++A++GD+ ++ V+ GA TR + Sbjct: 236 YNKITQPNRNRLLWADPSVDGMKTGHTDAAGYCLVSTALRGDRRVLTVLAGADSEATRAE 295 Query: 255 VSASLLSMGFYN 266 S LL+ F N Sbjct: 296 ESLKLLNWSFQN 307 >gi|114328315|ref|YP_745472.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] gi|114316489|gb|ABI62549.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] Length = 456 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 138/235 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V++ + PD +PASLTK+MT Y++F L++++ L + +S +A+ PS Sbjct: 92 VVDANTGAVLSASSPDELRHPASLTKMMTLYMLFEALRDRRVSLDDLVPVSGHAASMSPS 151 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G+ +T++ A+ L+ KSAND A A+ E L +E++F Q M ++ LG++ T F Sbjct: 152 KLGLVPGTRLTVEEAILGLVTKSANDAAAAVGEMLGGSEEQFAQMMTIRARALGMTRTVF 211 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +TA DMA+L+ + DFP YF PN + + + G Sbjct: 212 RNASGLPDPDQISTAHDMAVLARHLILDFPSEYRYFSTPSFVFHRHVIPNHDRMLSIYPG 271 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ADG+KTG+T ASG N+V SA++ D LI V+ GA ++ R+ A+LL+ GF + Sbjct: 272 ADGLKTGYTNASGLNLVTSALRSDVRLIGVVFGASNKYERDSHMAALLNAGFRQE 326 >gi|317401414|gb|EFV82047.1| penicillin-binding protein [Achromobacter xylosoxidans C54] Length = 356 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 139/236 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L + +S++A Sbjct: 14 WIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPVSEHAWRTG 73 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 74 GSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEAAFATLMNQEAERLGMRNT 133 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G+ H T+ RD+A LS + TD PQ+ HY++ K PN N + Sbjct: 134 HFMNATGLPDPQHMTSTRDLATLSAHLITDHPQFFHYYKQKSFTYNKITQPNRNRLLWAD 193 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ F N Sbjct: 194 PSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNWSFQN 249 >gi|332529901|ref|ZP_08405852.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC 19624] gi|332040598|gb|EGI76973.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC 19624] Length = 378 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 14/248 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD ++G +A + D PASLTKLMTAY+VF L++ + L P+TIS+ A P Sbjct: 22 WLLLDLSSGQALAASNADQTLPPASLTKLMTAYLVFEALRDGRLSLEKPLTISERARRQP 81 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G + +++ +K L+V+S ND AVA+AE + + + FVQ MN ++ LGL AT Sbjct: 82 GSRMFLEAGMRVPVEDLIKGLLVQSGNDGAVALAEGVAGSMENFVQAMNEKARALGLGAT 141 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAV 207 HF N G+ G +TARD+ +L+ R+ +DFP++ HY+ I+ G N N + Sbjct: 142 HFANPTGLPVDGQQSTARDLGVLAQRLLSDFPEHAHYYGIRKYRYAGTPPANDSNRNLLL 201 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ-----------GDQSLIAVILGALDRNTRNKVS 256 DGMKTG A G+++VA+A + G + L+AV+LGA TR + Sbjct: 202 FRDPSVDGMKTGHVEAVGYSMVATAQREFPHLGAAGGPGPRRLLAVVLGADSEQTRAAEA 261 Query: 257 ASLLSMGF 264 LL+ G+ Sbjct: 262 QRLLNWGY 269 >gi|49474302|ref|YP_032344.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49239806|emb|CAF26196.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 450 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 132/229 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F + ++ TPI +S+NA+ PP+ Sbjct: 45 VIDANTGKTLFQANATLKRYPASLTKMMTLYMLFQAMHMRRVTPNTPIPVSRNAAARPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T++ A K LI +SAND+A A+AE L EKKF + M ++ LG++ THF Sbjct: 105 KLGLKAGQTISAQEAAKALITRSANDVATAVAEYLGGNEKKFARMMTAKARKLGMTNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TARDMA LS ++ FPQ F+ K +G + N V T G Sbjct: 165 ANASGLPDLRNYSTARDMATLSLALRKHFPQQYKLFKTKSFVFRGHTVKSHNKLVKTMKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T SG N+ S +SL+AV++G R++ A+LLS Sbjct: 225 VDGIKTGYTQMSGSNLATSMHIEGRSLVAVVMGGKSSTARDRHMANLLS 273 >gi|46202335|ref|ZP_00208483.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 404 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 153/291 (52%), Gaps = 10/291 (3%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 P +L +D +G VIAE+ P +PASLTK+MTAYV F +K K IT+S+ A+ Sbjct: 17 PSASLAVDLGSGTVIAESRGGMPHHPASLTKMMTAYVAFGAIKAGKVSQDDIITVSERAA 76 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G ++L ALK +IV+SAND AVA+AE + +E F M + LG+ Sbjct: 77 SQGGATLDLGPGERISLGAALKAMIVRSANDAAVAVAEHVAGSESAFAVRMTEEAARLGM 136 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +++ F NA G+ GH ++ RDMAIL+ I+ DFP + F + KG+ P N + Sbjct: 137 TSSSFRNATGMTAAGHVSSPRDMAILAMAIERDFPAFRPMFSSRDTTWKGRVLPTVNGFL 196 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G + GA+GMKTGFTC++G+N+VA A +G + +AV++GA R L+ + Sbjct: 197 GAYAGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAGSSAERLGAIRRLMDQALQAE 256 Query: 268 --TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 T R N+ P+ S+E C + +M A+ + Sbjct: 257 PATGRSLAGL-------GNVGGTPPDRSQEACGYARSGKGGGPEMAIAQRR 300 >gi|260461046|ref|ZP_05809295.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259033080|gb|EEW34342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 297 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 128/221 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + E PASLTK+MT Y++F + + T I +S +A+ PP+ Sbjct: 49 VVDAQTGKQLFEVNSTAQRYPASLTKMMTLYLLFEAMDSGRVTKETQIPVSDHAASQPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F++G T+ +D+A++ ++VKSAND+AVA+ E L +E +F M + ++ LG+++T F Sbjct: 109 KMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAMMTSKARQLGMTSTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA+L + + FPQ+ HYF +G+ N +G G Sbjct: 169 RNASGLPDDSQMTTARDMALLGMALHSRFPQHFHYFSESDFMFRGRLVRGHNDMLGRVRG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ ASGFNIV S + LI V++GA RN Sbjct: 229 VDGIKTGYIRASGFNIVTSYNADGRRLIVVVMGADSARQRN 269 >gi|307321507|ref|ZP_07600902.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306892814|gb|EFN23605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] Length = 500 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 144/271 (53%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 R+ L++ + + R N I + Sbjct: 271 SGGARDAQMRKLVAKYMPSASRRGSGNLIAE 301 >gi|146276594|ref|YP_001166753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] gi|145554835|gb|ABP69448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] Length = 473 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 2/248 (0%) Query: 29 PYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 PY + +D TG + E +PASLTK+MT Y+ F ++ + L + +T++KNA+ Sbjct: 30 PYAAIVMDARTGETLYETNARTRLHPASLTKMMTLYITFQAIQRGEISLDSMVTVAKNAA 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PPS K G + L ++ VKSAND A AI E++ +E F + MN T+K +G+ Sbjct: 90 AEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGGSEAAFTERMNRTAKAIGM 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206 + + F N HG+ GH +TA DM +L R+ DFPQY + F + + NTN Sbjct: 150 TNSTFKNCHGLTAEGHLSTAYDMNMLGRRLFFDFPQYYNIFSRRTADAGVTTVSNTNRRF 209 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T +G+N+ SA +G++ +IA + G RN A LL +GF Sbjct: 210 LDAYKGADGIKTGYTSPAGYNLTGSAQRGNKRIIATVFGGKSTAHRNAKMAELLDLGFRE 269 Query: 267 KTDRKKIN 274 K+ Sbjct: 270 APANAKVR 277 >gi|304391580|ref|ZP_07373522.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp. R2A130] gi|303295809|gb|EFL90167.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp. R2A130] Length = 480 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 2/227 (0%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++D TG VI + PASLTK+MT Y+VF +K + T + +SK Sbjct: 47 PRYAAYVIDAKTGKVIFSRNGNARRYPASLTKMMTLYLVFEDMKAGRINGKTRLVMSKKG 106 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S PS + G ++++D A+K LI KSAND+A AI L +E +F + M ++ LG Sbjct: 107 SLQQPSKIGLRAGQSISMDQAVKSLITKSANDVATAIGGQLSGSEVEFAKRMTRKARQLG 166 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 +S T F NA+G+ G TTA DMA L ++ FP+ F + ++ ++Y N N Sbjct: 167 MSRTTFKNANGLTARGQVTTAADMAKLGMALREHFPRKYKLFSTRVFKLGKRRYGNHNKL 226 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +G G DG+KTG+T ASGFN+V+S G +S++AV++G +RN Sbjct: 227 LGRVRGVDGIKTGYTRASGFNLVSSVQTGGRSIVAVVMGGRSGRSRN 273 >gi|195970177|ref|NP_385517.2| hypothetical protein SMc00996 [Sinorhizobium meliloti 1021] gi|307309177|ref|ZP_07588848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|187904171|emb|CAC45990.2| Penicillin-binding protein [Sinorhizobium meliloti 1021] gi|306900323|gb|EFN30939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 500 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 144/271 (53%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 R+ L++ + + R N I + Sbjct: 271 SGGARDAQMRKLVAKYMPSASRRGSGNLIAE 301 >gi|294676715|ref|YP_003577330.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB 1003] gi|294475535|gb|ADE84923.1| D-alanyl-D-alanine carboxypeptidase-1 [Rhodobacter capsulatus SB 1003] Length = 538 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/262 (36%), Positives = 143/262 (54%), Gaps = 13/262 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +A+ + PF + ++D TG V+ E D +PASLTK+MT Y Sbjct: 16 FLAVLPVAL--SAAPFAAY----------VMDARTGEVLYEKNADTRLHPASLTKMMTLY 63 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ +A L T +T+S NA+ PS + G + L ++ +KSAND A AI Sbjct: 64 IAFQAIESGEASLDTMVTVSANAAGQAPSRLGLRTGQKIALRYLIRGAAIKSANDAAAAI 123 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 + L E F MN T+K LG+ T F NA+G+ + GH +TA DM+IL + DFPQ Sbjct: 124 GDFLEGDEAHFAARMNRTAKALGMKNTTFKNANGLTKAGHLSTAHDMSILGRHLLYDFPQ 183 Query: 184 YMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + + NTN + + GADG+KTG+T +GFN+ ASA +G++ +IA Sbjct: 184 YYNLFSRRTADAGIAHVANTNRRFLDAYDGADGIKTGYTVPAGFNLTASAQRGNKRIIAT 243 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 I G RN A L+ +GF Sbjct: 244 IFGGTSPAARNSKMAELMDLGF 265 >gi|114330774|ref|YP_746996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas eutropha C91] gi|114307788|gb|ABI59031.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosomonas eutropha C91] Length = 380 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 151/270 (55%), Gaps = 12/270 (4%) Query: 1 MRQFLVIIAMAMLSNIFPF------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M+QF I+ + +L +FP LSIA + +TL D ++G +A + P +PA Sbjct: 8 MKQF--ILFLFLLMPVFPAWSQQPELSIAAKS----FTLTDFHSGQTLASSNPHERLDPA 61 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAYVVFS LK+++ L + +SK A S + +T+D + +IV+ Sbjct: 62 SLTKLMTAYVVFSALKQERIKLDQVVPVSKKAWRMAGSRMFIEPNKPVTVDELIHGVIVQ 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E V MN +K LG+ THF N+ G+ HY+TA D+A+L+ Sbjct: 122 SGNDACVALAELIAGSEDLLVHMMNEEAKRLGMHNTHFTNSTGLTHPDHYSTANDLALLA 181 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I DFP+Y + ++ G N N + T DGMKTG+T A+G+ +V SA + Sbjct: 182 GAIIRDFPEYYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKR 241 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + LI+V++G N R+ S LL+ GF Sbjct: 242 DHRRLISVVMGTASPNARSIESQRLLNYGF 271 >gi|307823377|ref|ZP_07653606.1| Beta-lactamase [Methylobacter tundripaludum SV96] gi|307735362|gb|EFO06210.1| Beta-lactamase [Methylobacter tundripaludum SV96] Length = 389 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 137/234 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ +TG V+AEN D PASLTK+M+ YVVF + L +TIS+ A E P Sbjct: 42 YILMNYDTGKVLAENNADVKLAPASLTKIMSVYVVFREISNGHLHLNDLVTISQKAWETP 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ + +++ LK +I++S ND +VA+AE + E F MN ++ LG+ + Sbjct: 102 GSRMFIEVGNQVKVEDLLKGVIIQSGNDASVALAEHIAGDETTFADMMNQHAERLGMKNS 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF +++G+ HYTTARD+AILS + +FP Y +F K N N + Sbjct: 162 HFQDSNGLPIDNHYTTARDLAILSQALIKEFPDYYRWFSQKEFTFNNIVQHNRNQLLSRD 221 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTGFT A+G+ +VASA++ D LI+V++GA N R + +LL+ GF Sbjct: 222 ETVDGIKTGFTDAAGYCLVASALRNDMRLISVVMGASSPNARANENQNLLNYGF 275 >gi|328543015|ref|YP_004303124.1| D-alanyl-D-alanine carboxypeptidase superfamily [polymorphum gilvum SL003B-26A1] gi|326412761|gb|ADZ69824.1| D-alanyl-D-alanine carboxypeptidase superfamily [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 128/221 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G + D P PASLTK+MT Y++F ++ + L TP+ +S A+ PP+ Sbjct: 83 VIDAASGAELFAANADAPRYPASLTKMMTLYLLFEAVERGELTLDTPLAVSARAAARPPA 142 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 GST+T+ A + L V+SAND+AVAIAE L +E F M +++LG+S T F Sbjct: 143 KIGLATGSTITVREAAQALAVRSANDVAVAIAERLAGSESAFAAQMTAKARSLGMSRTRF 202 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMAIL +K FPQY YF+ G+ + TN +G G Sbjct: 203 VNASGLADTRQVTTARDMAILGRALKARFPQYAAYFRATSFAYNGRTFEATNKLLGRVPG 262 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+ SG+N+VA+ +G + + V++G + R+ Sbjct: 263 VDGLKTGYIGLSGYNLVATGSRGGRGFVVVVMGGKSESARD 303 >gi|298291483|ref|YP_003693422.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296927994|gb|ADH88803.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 570 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 133/229 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG ++ E D +PAS+TK+MT Y++F L+ K L TP+ +S A+ PS Sbjct: 63 IIDANTGRILHEQNADALRHPASVTKVMTLYLLFEQLQAGKMRLNTPLRVSAYAASQQPS 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST+ +++A++ LI +SAND+AV +AE++ F M ++ LG+S T F Sbjct: 123 KLGVKPGSTIVVEDAIQALITRSANDVAVVVAENISGDASTFAALMTRRARQLGMSRTTF 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ TTARD+A L I+ FP+Y YF+ + +G+ N N G G Sbjct: 183 RNPNGLPNPQQVTTARDLATLGRAIQERFPKYYAYFETRSFMYRGQAIRNHNRMFGRING 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T ASGFN++ S Q + +I V++G +R+ +LLS Sbjct: 243 VDGIKTGYTNASGFNLLTSVKQNGRYVIGVVMGGASAASRDNRMVALLS 291 >gi|170747224|ref|YP_001753484.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170653746|gb|ACB22801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 489 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 167/310 (53%), Gaps = 15/310 (4%) Query: 29 PYYTLL-DTNTG---HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 PY ++ D +G H + E+ HP AS+TK+MT Y++F ++ K L + +TIS Sbjct: 51 PYAAMVVDVKSGKTLHAVNEDALRHP---ASITKVMTLYLLFEQMERGKFALDSDLTISA 107 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ PS + G T+++++A+K ++ KSAND+A AI E++ +E++F Q M + Sbjct: 108 HAAAQAPSKLGLRPGQTISVEDAIKAIVTKSANDVACAIGENIAGSEERFAQMMTAKAHA 167 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+S TH+ NA G+ TTARD+ +L+ I+ FP Y YFQ + +G+ N N Sbjct: 168 LGMSRTHYANASGLPDPEQLTTARDLTVLARAIQDRFPHYYRYFQTRSFAFRGRVIGNHN 227 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G G DG+KTG+T SGFN++ +A + ++A++LG R+++ A L+ Sbjct: 228 HLLGNVQGVDGIKTGYTRDSGFNLMTAAKSEGRQIVAIVLGGKSGAGRDRIMADLVRSSL 287 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 +I+ + + ++ V ++ V T+ ++ + + + D E+ E Sbjct: 288 PRAYAGARISAPVTEVAERARPAVV---ADAVSRTRTQVASADDE-----DVETTGTTGE 339 Query: 325 KITLLKNKIT 334 + L +K T Sbjct: 340 PLDLSPSKTT 349 >gi|311109424|ref|YP_003982277.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8] gi|310764113|gb|ADP19562.1| D-alanyl-D-alanine carboxypeptidase DacC 2 [Achromobacter xylosoxidans A8] Length = 362 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 137/236 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D N+G +A + PD PASLTK+MTAYVVF+ L EK+ L + +S+ A Sbjct: 20 WIVMDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALDEKRLTLEQTVPVSERAWRTG 79 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 80 GSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEASFASLMNQEAERLGMRNT 139 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G+ H T+ RD+AILS + TD P + HY++ K PN N + Sbjct: 140 HFMNATGLPDPQHMTSTRDLAILSSHLITDHPDHFHYYKQKSYTYNKITQPNRNRLLWAD 199 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ F N Sbjct: 200 PSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNWSFQN 255 >gi|89069769|ref|ZP_01157105.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola granulosus HTCC2516] gi|89044715|gb|EAR50826.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola granulosus HTCC2516] Length = 448 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 152/276 (55%), Gaps = 8/276 (2%) Query: 12 MLSNIFPFLSIAETNKLPYYTL-LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFL 69 ML+ + P S A PY + +D TG V AEN +PASLTK+MT Y+ F + Sbjct: 2 MLAALAPLASRAA----PYAAMVMDARTGQVFHAENATTR-LHPASLTKMMTLYIAFEAV 56 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + L T +TI + A+ PPS G + ++ VKSAND A AIA ++ Sbjct: 57 ERGEISLDTVVTIPRQAAAEPPSELGLVTGQQIRFRYLIRAAAVKSANDAATAIAFAISG 116 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +++ F MN T++ +G+++T+F+NAHG+ +GH +TA DM IL + D+PQY + F Sbjct: 117 SQEAFAARMNRTARAMGMNSTNFINAHGLTANGHMSTAADMTILGRHMIYDWPQYYNLFS 176 Query: 190 IKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + ++ NTN + + GADG+KTG+T A+G N+VASA +G + +I + GA Sbjct: 177 RRTTDAGLREVSNTNRRFLDAYAGADGIKTGYTNAAGSNLVASAQRGSERIIVTVFGAPS 236 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 RN+ L+ +GF + + + + Y N Sbjct: 237 SAVRNQRVMELMDLGFSRAPSQVAVAALQRPPYLGN 272 >gi|217968699|ref|YP_002353933.1| beta-lactamase [Thauera sp. MZ1T] gi|217506026|gb|ACK53037.1| Beta-lactamase [Thauera sp. MZ1T] Length = 375 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 5/260 (1%) Query: 10 MAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +A+L ++F ++A+T P + L+D TG +AE D PASLTKLMTAY+ Sbjct: 5 IAVLVSLFSLSALAQTVPPPALAAKAWALVDHATGQTLAEKDADARIEPASLTKLMTAYI 64 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 FS LKE + +S A S + +++D ++ +IV+S ND VA+A Sbjct: 65 TFSKLKEGSLKPDQVVPVSTKAWRMEGSRMFIEPNKPVSVDELIRGVIVQSGNDACVALA 124 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +E+ F MN ++ LG++ THF N+ G+ YT+ARD+A+L+ I DFP+Y Sbjct: 125 ETIAGSEEAFAALMNREAQRLGMTNTHFTNSTGLPDPQLYTSARDLAVLASAIVRDFPEY 184 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + +K G K PN N + DGMKTG T ++G+ +V++A +G++ L++V+L Sbjct: 185 YGLYSLKEFTYNGIKQPNRNRLLYMDPSVDGMKTGHTSSAGYCLVSTARRGERRLVSVVL 244 Query: 245 GALDRNTRNKVSASLLSMGF 264 GA + R + S LL+ G+ Sbjct: 245 GAASDSVRAQESLKLLNFGY 264 >gi|218680753|ref|ZP_03528650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 427 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRTLLAAVLTVTLAVSAPIAALAGSASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPIT+SK A+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPITMSKYAAARPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAVALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSAASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLL 260 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDDKMAGLL 256 >gi|304391426|ref|ZP_07373368.1| penicillin-binding protein [Ahrensia sp. R2A130] gi|303295655|gb|EFL90013.1| penicillin-binding protein [Ahrensia sp. R2A130] Length = 289 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 128/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D PASLTK+MT Y+ F L ++ L + I +S A+ P S Sbjct: 57 VIDAKSGKVLHNTRADAIRFPASLTKMMTMYMAFEALSRRRISLNSEIPVSSYAASKPAS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ +D AL+ L VKSAND+A A+AE L +E F + M +++LG+ +T F Sbjct: 117 KLYLKAGETINVDTALQALAVKSANDVATAMAEFLGGSEATFARMMTARARSLGMRSTTF 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA LS ++ +PQY HYF KGK N +G G Sbjct: 177 RNASGLPDRLQVTTARDMATLSLALQKRYPQYFHYFGKSTFVWKGKTIRGHNRVLGMLKG 236 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 A+G+KTG+T ASGFN+ S + ++ L+ VILG RN+ LL Sbjct: 237 ANGIKTGYTRASGFNLATSVKRPNKHLVGVILGEDSGKVRNRHMVELL 284 >gi|319407377|emb|CBI81028.1| Penicillin-binding protein [Bartonella sp. 1-1C] Length = 449 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 132/228 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F +K + TPI IS A+ PP+ Sbjct: 45 VIDANTGKTLFQANATLKRYPASLTKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T++++ A K LI KSAND+A AI E L +E+KF Q M ++ LG+ THF Sbjct: 105 KIGIKAGQTISIEAATKALITKSANDVATAIGEYLGGSEQKFAQMMTIKARKLGMKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+DMA L+ ++ FP+ F+ + +GK N N + T G Sbjct: 165 ANASGLPDTRNYSTAQDMATLALALRRHFPEQYKLFKTTHFKFRGKTINNHNTLIKTIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SG N+ S +S++AV++G NTRN A+LL Sbjct: 225 VDGIKTGYTQMSGSNLATSMRINGRSIVAVVMGGKSSNTRNIHMANLL 272 >gi|254438085|ref|ZP_05051579.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] gi|198253531|gb|EDY77845.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] Length = 471 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 134/251 (53%), Gaps = 2/251 (0%) Query: 26 NKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 N PY + +D TG ++ D +PASLTK+MT Y+ F ++ + L ITI+ Sbjct: 30 NSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAVERGEISLDDMITITP 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ P S G + ++ VKSAND A AI +L E F + M T++ Sbjct: 90 LAASEPASKLWLAAGQRIQFRYLIRASGVKSANDAATAIGIALEGNEAAFARRMTATARA 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +G+S T F NAHG+ + GH +TARDM +L + DFPQY + F + + NTN Sbjct: 150 MGMSRTTFRNAHGLTETGHMSTARDMTVLGRHMIYDFPQYYNIFSRLTTDAGVSQVSNTN 209 Query: 205 WA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + GADG+KTG+T A+GFN+VASA +G + +IA + G RN A LL MG Sbjct: 210 RRFLNAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGTSTAQRNARVAELLDMG 269 Query: 264 FYNKTDRKKIN 274 F +IN Sbjct: 270 FARAPTTARIN 280 >gi|33594884|ref|NP_882527.1| putative penicillin-binding protein precursor [Bordetella parapertussis 12822] gi|33564960|emb|CAE39907.1| putative penicillin-binding protein precursor [Bordetella parapertussis] Length = 418 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 140/236 (59%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L + +S++A Sbjct: 76 WITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTG 135 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 136 GSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQRLGMRNT 195 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K PN N + Sbjct: 196 HFMNSTGLPDPQHVTTARDLATLAVHLLSDYPDYYHYYKQKSYTYNKITQPNRNRLLWAD 255 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S LL+ F N Sbjct: 256 PSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQN 311 >gi|154248459|ref|YP_001419417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154162544|gb|ABS69760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 663 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 135/229 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ E+ PD +PAS+TK+MT Y++F L+ L + + +S A+ PS Sbjct: 78 IVDANTGKVLYEDNPDALRHPASVTKIMTLYLLFEQLEAGNLKLDSDLQVSAKAASQQPS 137 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GS + +++A+K L+ +SAND+AV IAE+L +E +F + M ++ LG+S T F Sbjct: 138 KLGVKPGSAIEVEDAIKALVTRSANDVAVVIAENLGGSESEFAEMMTRKARALGMSRTVF 197 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD++IL I+ FP+ YF + +G+ N N +G G Sbjct: 198 RNASGLPNPNQVTTARDLSILGRAIQDRFPKQYKYFATRTFYYRGQAIGNHNRLLGRVEG 257 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T ASGFN+V S + + L+ V+LG R+ +L+S Sbjct: 258 VDGIKTGYTQASGFNLVTSVKRDGRFLVGVVLGGSSAGARDARMTNLIS 306 >gi|33591361|ref|NP_879005.1| putative penicillin-binding protein precursor [Bordetella pertussis Tohama I] gi|33599159|ref|NP_886719.1| putative penicillin-binding protein precursor [Bordetella bronchiseptica RB50] gi|33571003|emb|CAE40482.1| putative penicillin-binding protein precursor [Bordetella pertussis Tohama I] gi|33575205|emb|CAE30668.1| putative penicillin-binding protein precursor [Bordetella bronchiseptica RB50] gi|332380762|gb|AEE65609.1| putative penicillin-binding protein precursor [Bordetella pertussis CS] Length = 418 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 140/236 (59%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L + +S++A Sbjct: 76 WITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTG 135 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 136 GSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQRLGMRNT 195 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K PN N + Sbjct: 196 HFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTYNKITQPNRNRLLWAD 255 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S LL+ F N Sbjct: 256 PSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQN 311 >gi|296116795|ref|ZP_06835401.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] gi|295976596|gb|EFG83368.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] Length = 402 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 133/233 (57%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++++ D PASLTKLMT Y+ F L+ + L + +S +A+ PS Sbjct: 65 VMDARTGTVLSQSNADLRRFPASLTKLMTLYLTFKALRAGRITLDQVVPVSAHAASMEPS 124 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATH 151 + GS +T++ A+ L+ KSAND A A+ E L +E F Q M + L ++ T Sbjct: 125 KLGLRPGSYLTVEEAILALVTKSANDAACALGEFLGAGSESTFAQIMTQQAARLSMNDTS 184 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ T+ARD+A L+ I DF +Y HYF + +G+ PN + + ++ Sbjct: 185 FRNASGLPNEEQMTSARDLATLARHIALDFGEYYHYFAVPAFYFRGRYVPNHDPMLKSYP 244 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG+T +G N+V SA++ + LI V+LGA TRN V A LL F Sbjct: 245 GADGLKTGYTAVAGHNLVTSAVRDNVRLIGVVLGAPSNETRNAVMADLLDDSF 297 >gi|209548202|ref|YP_002280119.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533958|gb|ACI53893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 427 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/260 (35%), Positives = 141/260 (54%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRTLLAAVLTVTLAVSAPLAALAGSASL----VLDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F + +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSVASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLL 260 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDDKMAGLL 256 >gi|329851344|ref|ZP_08266101.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis biprosthecum C19] gi|328840190|gb|EGF89762.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis biprosthecum C19] Length = 457 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 1/232 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V D PASLTK+MT Y+ F L I +S+NA+ P Sbjct: 24 VVDAVTGEVFYSAKADSARYPASLTKIMTLYMAFDALAMGTLKPDDTIVMSRNAAGQSPV 83 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ +D+A++L+ + SAND+AVA+AE + TE++F M ++ LG+ T F Sbjct: 84 KVYLKAGETIDVDSAMRLVALYSANDLAVALAEKIGGTEERFAALMTIKAQELGMGQTRF 143 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ ++ARDMAIL+ + D+PQY YF + +G+ Y N N + G Sbjct: 144 VNASGLPDPRQLSSARDMAILARAVMRDYPQYYDYFSLPNYTFRGRTYVNHN-PLRNMPG 202 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTGFT A+G+N+VAS ++ LIAV+LG +++ R + L++ GF Sbjct: 203 VDGMKTGFTNAAGYNLVASQVKDGHRLIAVMLGGNNKSQRREHVTFLMNTGF 254 >gi|254448546|ref|ZP_05062006.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015] gi|198261929|gb|EDY86214.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015] Length = 401 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 155/277 (55%), Gaps = 7/277 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 M+ FL+ IA+ +++F F ++A P + L+D TG V++E+ D PA Sbjct: 23 MKHFLLAIAL-FATSLFSFQAVAVPIPSPPQLNANSWILMDFATGKVLSEHNADERIEPA 81 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT+YVV+ + ++ + +S+ A S + G ++ L+ LK L+++ Sbjct: 82 SITKIMTSYVVYQAIDSGLISMSDSVPVSEKAWRMKGSRMFIEVGKSVPLEALLKGLVIQ 141 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND AVA+AE + TE+ F + MN +K LG++ +HF+N+ G HYTTARD+AILS Sbjct: 142 SGNDAAVALAEYVGGTEEAFAEQMNAAAKALGMTGSHFVNSTGWPHADHYTTARDIAILS 201 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + D+P++ + K K PN N + DG+KTG T A+G+ + ASA + Sbjct: 202 HALIRDYPEHYRVYAEKNYTYNSIKQPNRNALLWRDSSVDGIKTGHTEAAGYCLAASARR 261 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 D LI+V++G R++ S +LL+ GF RK Sbjct: 262 DDMRLISVVMGTESSGARSQYSQTLLNYGFRYYETRK 298 >gi|116250789|ref|YP_766627.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhizobium leguminosarum bv. viciae 3841] gi|115255437|emb|CAK06513.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhizobium leguminosarum bv. viciae 3841] Length = 464 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 140/260 (53%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ L + L+ P ++A L +LD TG V+A D +PASLTK+M Sbjct: 38 MRKLLAAVLTVTLAVSAPLAALAGNASL----ILDARTGKVLASENADTLNHPASLTKMM 93 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 94 TLYLTFEALKRGKITWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 153 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 154 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 213 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 214 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 273 Query: 241 AVILGALDRNTRNKVSASLL 260 V+LG +R+ A LL Sbjct: 274 GVVLGGRTARSRDAKMAGLL 293 >gi|148244582|ref|YP_001219276.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius okutanii HA] gi|146326409|dbj|BAF61552.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius okutanii HA] Length = 375 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 134/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y+++D N+G VIA N + PASLTKLMTAYV+F + + L + ISK A + Sbjct: 39 YSIVDYNSGKVIASNKQHYKRAPASLTKLMTAYVIFQLISNDRIKLEDEVRISKKAWKTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S + G TM L+ LK +I++S ND AVA+AE + E F +MN ++ LG++ + Sbjct: 99 GSKSFVEVGKTMKLETLLKGMIIQSGNDSAVALAEHIAGDESTFTTYMNKYARKLGMNNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F NA G+ + YTTA D+ +L+ I DFPQ+ ++ K G K N N + Sbjct: 159 QFRNASGLPDNNQYTTAADIVLLATAIIKDFPQFYLWYSEKEFTYHGIKQYNRNKLLWND 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTGFT +G+N+VASA + LI+V+LG+ N R + +L GF Sbjct: 219 HTVDGLKTGFTKKAGYNLVASAKRLGMRLISVVLGSSSVNDRTSQTQKILDYGF 272 >gi|209545022|ref|YP_002277251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209532699|gb|ACI52636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 420 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 1/236 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG +++++ PD PASLTKLMT Y+ F L + L + +S +++ PS Sbjct: 106 VMDARTGAILSQSNPDLQRFPASLTKLMTLYLAFKALHAGQITLDQSVPVSAHSASMEPS 165 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-EKKFVQHMNNTSKNLGLSATH 151 GS +T++ A+ L+ KSAND A A+ E + E +F M ++ LG++ T Sbjct: 166 KLGLMPGSYLTVEQAVLGLVTKSANDAACALGELMGGGDEGRFADLMTRQARALGMTRTT 225 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ T+ARD+A+L+ +I T+FP Y HYF + G++ PN + + + Sbjct: 226 FRNASGLPNDEQVTSARDLALLTRQIITEFPDYYHYFSVPAFYFHGRQVPNHDPMLRIYP 285 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 GADG+KTG+T +G N+V SAI+ + LI V+LGA R+ V AS+L GF + Sbjct: 286 GADGLKTGYTTDAGRNLVTSAIRENVRLIGVVLGARTNPQRSAVMASILDDGFRQE 341 >gi|162149241|ref|YP_001603702.1| D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|161787818|emb|CAP57416.1| putative D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 423 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 1/236 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG +++++ PD PASLTKLMT Y+ F L + L + +S +++ PS Sbjct: 109 VMDARTGAILSQSNPDLQRFPASLTKLMTLYLAFKALHAGQITLDQSVPVSAHSASMEPS 168 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-EKKFVQHMNNTSKNLGLSATH 151 GS +T++ A+ L+ KSAND A A+ E + E +F M ++ LG++ T Sbjct: 169 KLGLMPGSYLTVEQAVLGLVTKSANDAACALGELMGGGDEGRFADLMTRQARALGMTRTT 228 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ T+ARD+A+L+ +I T+FP Y HYF + G++ PN + + + Sbjct: 229 FRNASGLPNDEQVTSARDLALLTRQIITEFPDYYHYFSVPAFYFHGRQVPNHDPMLRIYP 288 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 GADG+KTG+T +G N+V SAI+ + LI V+LGA R+ V AS+L GF + Sbjct: 289 GADGLKTGYTTDAGRNLVTSAIRENVRLIGVVLGARTNPQRSAVMASILDDGFRQE 344 >gi|254500491|ref|ZP_05112642.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222436562|gb|EEE43241.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 558 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 4/235 (1%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++A N P Y ++D TG + D PASLTK+MT Y++F L+ + +++ Sbjct: 20 TVASAN--PKYAGIVVDAKTGKTLYAANADAYRFPASLTKIMTTYIIFEELEAGRLSMSS 77 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +SKNA+ PS K GST+++ +A+ L+ KSAND+A +AE++ +E F + M Sbjct: 78 RLKVSKNAAAEVPSKLGLKPGSTISVKDAIGALVTKSANDVATTVAENIAGSEAAFARRM 137 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 T++ LG+S T F NAHG+ TTARDMA L I+ FP+ F + + KG+ Sbjct: 138 TRTARQLGMSKTTFRNAHGLPNSKQRTTARDMATLGRAIQERFPERYKLFNTRVYKYKGR 197 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N N +G+ G DG+KTG+ ASGFN+V S + ++ ++AV++G RN Sbjct: 198 NLRNHNRLLGSVKGVDGIKTGYIRASGFNLVTSVQRNNRHIVAVVMGGRTGARRN 252 >gi|158423216|ref|YP_001524508.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Azorhizobium caulinodans ORS 571] gi|158330105|dbj|BAF87590.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Azorhizobium caulinodans ORS 571] Length = 629 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 138/229 (60%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ E D +PASLTK+MT Y++F L+ + L + + +S +A+ P+ Sbjct: 126 VVDGNTGKVLYEENADSLRHPASLTKIMTLYMLFEQLQAGRLKLDSDLPVSAHAASQSPT 185 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GST+ +++A+K ++ +SAND AV I E++ TE F + M ++ LG+S T F Sbjct: 186 KLNLRPGSTIEVEDAIKAVVTRSANDAAVVIGEAIGGTESNFAEMMTRKARALGMSNTTF 245 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G TTARD+++L I+ FP+ YF + +G+ N N + G Sbjct: 246 RNASGLPNPGQVTTARDLSVLGRAIQDRFPREYRYFSTRAFVYRGETIGNHNRLMLRMEG 305 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T ASGFN+V S + D+ L+ V+LG ++R++ AS+L+ Sbjct: 306 VDGIKTGYTNASGFNLVTSLHRDDRFLVGVVLGGSSASSRDQRMASILT 354 >gi|119896472|ref|YP_931685.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] gi|119668885|emb|CAL92798.1| probable D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] Length = 376 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D NTG V+A N PD PASLTKLMTAY+ FS LK L P+ +S+ A Sbjct: 31 WVLVDHNTGQVLAANDPDARIEPASLTKLMTAYLTFSALKAGTIALDQPVPVSERAWRQE 90 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+ ++ +IV+S ND VA+AE + TE+ F MN ++ LG+S T Sbjct: 91 GSRMFIEPQKPVTVQELIRGVIVQSGNDACVALAELIAGTEEAFAAMMNREAQRLGMSNT 150 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGT 209 HF N+ G+ YTTA+D+A+L+ I DFP Y + +K PN N + Sbjct: 151 HFTNSTGLPDPQLYTTAKDLALLASAIIRDFPDYYASLYSLKEYRYNNITQPNRNRLLWM 210 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T ++G+ +++SA++G + L++V+LGA R + S LL+ GF Sbjct: 211 DSTVDGMKTGHTSSAGYCLISSALRGPRRLVSVVLGAESDTVRAQESLKLLNFGF 265 >gi|124265504|ref|YP_001019508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] gi|124258279|gb|ABM93273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] Length = 384 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 137/241 (56%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---S 87 Y L D T V+A PD P PASLTKLM+AY+VF LK+KK LT + +S+ A Sbjct: 35 YLLFDVTTNQVLAAKDPDSPIEPASLTKLMSAYLVFQALKDKKLTLTQTLPVSERAWRTG 94 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S S S +T+D+ LK IV+S ND V +AE + + ++FV MN ++ GL Sbjct: 95 MTGASRSFLPLNSQVTVDDLLKGEIVQSGNDATVVLAEGVGGSLEQFVAMMNRQAQAFGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 AT F N G+ GH +TARD+A+++ R+ DFP+Y+ Y ++ K PN N + Sbjct: 155 KATTFKNPEGLPAAGHTSTARDLAVIATRLVQDFPEYLRYSVMREFTFNKIKQPNRNLLL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNKVSASLLSMG 263 DG+KTGFT A+G+ ++ +A + G + LI+V+LGA +R S LL+ G Sbjct: 215 YRDPTVDGLKTGFTDAAGYCMITTAKRDFPNGPRRLISVVLGAASMESRANESQKLLNWG 274 Query: 264 F 264 + Sbjct: 275 Y 275 >gi|114319338|ref|YP_741021.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1] gi|114225732|gb|ABI55531.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1] Length = 381 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 132/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AEN D +PASL K+MTAYVVFS L+E L +T+S+ A P Sbjct: 39 HVLMDARSGQVLAENNADEARDPASLVKMMTAYVVFSELREGNIDLDELVTVSERAWRTP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G + + + ++ +I++S ND VA+AE + E+ F Q MN+ ++ LG+ T Sbjct: 99 GSRMFIEPGDNVRVGDLIRGVIIQSGNDACVALAEHIAGDEQTFAQVMNSYAEQLGMENT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F NA G+ TTARD A+L+ I DFP+Y ++ + + N N + Sbjct: 159 YFANATGLPDEAMKTTARDTALLARAIVRDFPEYYGWYSERSFTWNDIRQSNRNRLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A+G+N+ ASA + LI+V+LG R + SLL+ GF Sbjct: 219 SSVDGLKTGHTSAAGYNLAASAEREGTRLISVVLGTASEQARADQTQSLLNYGF 272 >gi|319404375|emb|CBI77978.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 449 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 131/228 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F +K + TPI IS A+ PP+ Sbjct: 45 VIDANTGKTLFQANATLKRYPASLTKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T++++ A K LI KSAND+A AI E L +E+KF Q M ++ LG+ THF Sbjct: 105 KIGIKAGQTISIEAATKALITKSANDVATAIGEYLGGSEQKFAQMMTIKARTLGMKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+DMA L+ ++ FP+ F+ +G+ N N + T G Sbjct: 165 ANASGLPDTRNYSTAQDMATLALALRRHFPEQYKLFKTTHFTFRGQTINNHNTLIKTIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SG N+ S +S++AV++G NTRN A+LL Sbjct: 225 VDGIKTGYTQMSGSNLATSMRINGRSVVAVVMGGKSSNTRNIHMANLL 272 >gi|27380267|ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA 110] gi|27353431|dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110] Length = 611 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 139/229 (60%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G V+ PD +PASLTK+MT Y++F L+ K L T + +S++A++ P+ Sbjct: 63 IVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEMPVSQHAADQDPT 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ +++A+K L+ +SAND AV IAE++ E F Q M +++LG+S T + Sbjct: 123 KLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTRKARSLGMSKTVY 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARD A L I+ FP+Y YF +G+ N N +G+ G Sbjct: 183 RNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSIRNHNHLLGSVEG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +LL+ Sbjct: 243 VDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLLA 291 >gi|222109487|ref|YP_002551751.1| serine-type d-ala-d-ala carboxypeptidase [Acidovorax ebreus TPSY] gi|221728931|gb|ACM31751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax ebreus TPSY] Length = 387 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 37 YMLVDVTAGQVLATKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMP 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND VA+AE + T + FV+ MN +K LG++ T Sbjct: 97 GSRMFIDPKMQVPVDDLLKGMIVQSGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNT 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K +G N+ N + Sbjct: 157 AYKNPEGLTEPGHTTTARDLATLATRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLL 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ +VA++ + G + L++++LGA N R S LL+ Sbjct: 217 FRDPSVDGLKTGHTAAAGYCLVATSKREFPNVGQRRLLSIVLGAASENARANESQKLLNW 276 Query: 263 GF 264 G+ Sbjct: 277 GY 278 >gi|121592706|ref|YP_984602.1| penicillin-binding protein 6 [Acidovorax sp. JS42] gi|120604786|gb|ABM40526.1| penicillin-binding protein 6 [Acidovorax sp. JS42] Length = 387 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 37 YMLVDVTAGQVLATKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMP 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND VA+AE + T + FV+ MN +K LG++ T Sbjct: 97 GSRMFIDPKMQVPVDDLLKGMIVQSGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNT 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K +G N+ N + Sbjct: 157 AYKNPEGLTEPGHTTTARDLATLATRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLL 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ +VA++ + G + L++++LGA N R S LL+ Sbjct: 217 FRDPSVDGLKTGHTAAAGYCLVATSKREFPNVGQRRLLSIVLGAASENARANESQKLLNW 276 Query: 263 GF 264 G+ Sbjct: 277 GY 278 >gi|293602524|ref|ZP_06684970.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] gi|292819286|gb|EFF78321.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] Length = 394 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 138/236 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L + +S++A Sbjct: 52 WIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPVSEHAWRTG 111 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ LG+ T Sbjct: 112 GSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAERLGMKNT 171 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G+ H T+ RD+A LS + TD P + HY++ K PN N + Sbjct: 172 HFMNATGLPDPQHVTSTRDLATLSSHLITDHPDFFHYYKQKSYTYNKITQPNRNRLLWAD 231 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ F N Sbjct: 232 PSVDGMKTGHTDSAGYCLVSTAMRGDRRILVVVVGTDSEATRAEESLKLLNWSFQN 287 >gi|254496461|ref|ZP_05109338.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12] gi|254354317|gb|EET12975.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12] Length = 413 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 137/234 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + L ++ LT + +SK+A + Sbjct: 66 YILIDVNSGKVIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDSVRVSKDAWKIG 125 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G + +++ LK +IV S ND VA+AE + TE F MN ++NLG+ + Sbjct: 126 GSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHIGGTENSFTDIMNQQAQNLGMQNS 185 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFPQY +++ K G + PN N + Sbjct: 186 HFTDSTGLPDPNLYTTAKDLAILGRALIVDFPQYYDWYKQKWFTYNGIRQPNRNRLLWRD 245 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +GF +V+SA + + L+AV+LG + ++R S LL+ GF Sbjct: 246 NQVDGLKTGHTSEAGFCLVSSAKRENMRLLAVVLGEPNDSSRADDSEKLLNYGF 299 >gi|182678644|ref|YP_001832790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634527|gb|ACB95301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 563 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 146/264 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+GH + + +PAS+TK+MT Y++F L++ L + I +S +A+ P+ Sbjct: 80 VVDANSGHTLYAHGEHELRHPASITKVMTLYLLFEQLEQGHLRLDSAIHVSPHAAAQKPT 139 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 GS++++++A++ ++ +SAND+AVAIAE++ E+ F M + LG+S THF Sbjct: 140 KLGLHAGSSISVEDAIRAVVTRSANDMAVAIAETVGGDEETFAGMMTRKAHMLGMSRTHF 199 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTA D+AIL I+ FP+Y YF G++ N N + G Sbjct: 200 ENASGLPNDAQVTTAHDLAILGRAIQDRFPRYYPYFSTHVFHYAGQEIRNHNHLLDQVEG 259 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T ASGFN++ S +G S++A +LG + R+++ A L+ N + Sbjct: 260 MDGIKTGYTRASGFNLLTSVKRGGHSIVAAVLGGVSAGARDRIMARLIENQIDNGATTRS 319 Query: 273 INYIIKDFYQQNLSNEVPNISEEV 296 + + ++ L+ + E+ Sbjct: 320 VGLLTENTASDRLARSGEELPPEL 343 >gi|312113134|ref|YP_004010730.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] gi|311218263|gb|ADP69631.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] Length = 584 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 145/261 (55%), Gaps = 3/261 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG ++ P PAS+TK+MT Y++F L++ K + T + +S A+ P+ Sbjct: 33 VVDFHTGRILISRNATDPRFPASVTKVMTLYLLFDALRDGKLNMNTKLRVSAYAASQSPT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+T+ + + ++ KSAND+AV +AE+L +E++F + M ++ +G+ T F Sbjct: 93 KLGLDAGDTITVSDVIGAIVTKSANDMAVVVAEALAGSEEEFARRMTQKARTIGMLNTTF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTA+D+ IL+ + TD P+ F K + G+ Y N N + ++ G Sbjct: 153 RNASGLPNSEQRTTAQDLVILARSVITDHPERSRVFSTKYFQYDGEIYRNHNTMLFSYEG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TD 269 +GMKTGFT ASGFN++A+A +G++ LIAV+LG RN ++L + T Sbjct: 213 MEGMKTGFTSASGFNLLATARRGEKRLIAVVLGGSSARVRNAAMRNILDASWSKAMTLTA 272 Query: 270 RKKINYIIKDFYQQNLSNEVP 290 KK ++ F + + P Sbjct: 273 AKKAGALVSSFAPKQFAQAAP 293 >gi|83593448|ref|YP_427200.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] gi|83576362|gb|ABC22913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] Length = 468 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 1/256 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 +AML+ +F L + Y +++ D +TG V+ D PASLTK+MT Y++F Sbjct: 28 LAMLAVVFLLLGLPTQAFAGYASIVVDASTGRVLQARNADMRNYPASLTKMMTLYLLFEA 87 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + K L + + +SK A+ PS G+ + +++A+K L+ KSAND+AV IAE+L Sbjct: 88 IDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVVIAEALG 147 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 TE F M + LG+S T F NA G+ +G TTARDMA+LS + FP + +F Sbjct: 148 GTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFPNHYRFF 207 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + N V + GADG+KTG+ ASGFN+ +SA++ + L+AV+ G Sbjct: 208 ATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAVVFGGQT 267 Query: 249 RNTRNKVSASLLSMGF 264 R+ +LL GF Sbjct: 268 ARARDTQMMALLDEGF 283 >gi|319761132|ref|YP_004125069.1| beta-lactamase [Alicycliphilus denitrificans BC] gi|330822990|ref|YP_004386293.1| beta-lactamase [Alicycliphilus denitrificans K601] gi|317115693|gb|ADU98181.1| Beta-lactamase [Alicycliphilus denitrificans BC] gi|329308362|gb|AEB82777.1| Beta-lactamase [Alicycliphilus denitrificans K601] Length = 387 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 10/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 37 YLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMP 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND +A+AE + T + FV+ MN +K LG+ T Sbjct: 97 GSRMFIDPKMQVPVDDLLKGMIVQSGNDATMALAEGVGGTAENFVRLMNEQAKALGMKNT 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K +G N+N T Sbjct: 157 AYKNPEGLTEPGHTTTARDLATLATRLIQDFPEYMHYYSTKQYRYEGTPASNSN-NRNTL 215 Query: 211 L----GADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLS 261 L DG+KTG T A+G+ +VA++ + G + L++++LGA N+R S LL+ Sbjct: 216 LFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASENSRANESQKLLN 275 Query: 262 MGF 264 G+ Sbjct: 276 WGY 278 >gi|118602482|ref|YP_903697.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567421|gb|ABL02226.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 375 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y+++D N+G VIA + PASLTKLMTAYVVF F+ + + L + ISK A + Sbjct: 39 YSIVDYNSGKVIASSKQHDKRAPASLTKLMTAYVVFQFINDGRISLEDEVRISKKAWKTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S + G ++ L+ LK +I++S ND AVA+AE + TE F +MN ++ LG++ + Sbjct: 99 GSKSFVEVGKSIKLETLLKGMIIQSGNDSAVALAEHIAGTESTFTTYMNEYARQLGMNNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F NA G+ YTTA D+ +L+ DFP++ ++ K G K N N + + Sbjct: 159 WFENASGLPNDNQYTTAADITLLAIATIRDFPKFYQWYSQKEFTYHGIKQRNRNKLLWSD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTGFT +G+N+VASA + LI+V+LG+ N R + +L GF Sbjct: 219 HTVDGLKTGFTKKAGYNLVASAKRAGMRLISVVLGSSSVNARTSQTQKILDYGF 272 >gi|121997803|ref|YP_001002590.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halorhodospira halophila SL1] gi|121589208|gb|ABM61788.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Halorhodospira halophila SL1] Length = 392 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 133/236 (56%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + L+D ++G+++A P+ W PASL K+MTAYVVF L L +T+S+ A Sbjct: 48 PSHLLVDMHSGYILAHRDPEESWEPASLAKIMTAYVVFEELASGHIGLEDKVTVSEKAWR 107 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G+ +T+ L+ LIV+S ND AVA+AE + E+ F Q MN + LG+ Sbjct: 108 SSGSRMFLEVGTEVTVAELLQGLIVQSGNDAAVALAEHVAGDEETFAQVMNQYASRLGMD 167 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 TH+ NA G+ TTA+D A L+ + DFP++ ++ + E G N N + Sbjct: 168 NTHYTNATGMPHEQMRTTAQDTARLARAMIDDFPEFYDWYSQRSFEYAGINQHNRNRLLW 227 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T ++G+N+V SA +G LI+V+LG + R + S LL+ GF Sbjct: 228 RDETVDGLKTGYTSSAGYNLVTSAERGGMRLISVVLGTESEDARAQQSLQLLNYGF 283 >gi|222148621|ref|YP_002549578.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] gi|221735607|gb|ACM36570.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] Length = 484 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N G V+ D PASLTK+MT Y+VF L++ + L + + +S +A+ PPS Sbjct: 47 VVDVNNGKVLRATDADSLRYPASLTKMMTLYLVFEALEKGRIRLNSSVPVSAHAASEPPS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + T++ ++ L+ +SAND A A E L +E +F Q M + ++ LG+S T + Sbjct: 107 KLGLRPGGSFTVEQGIQALVTRSANDAATAFGEYLGGSEARFAQMMTSKARALGMSRTTY 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ G TTARD A L ++ FPQY YF + + N N +G+ G Sbjct: 167 RNANGLPNSGQMTTARDQARLGMALRQHFPQYYAYFSTRSFTYGRQVIGNHNRLIGSVRG 226 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTGFT ASGFN+V S +S++ V+LG R+ Sbjct: 227 VDGIKTGFTNASGFNLVTSLQIDGKSVVGVVLGGASGAARD 267 >gi|241203383|ref|YP_002974479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857273|gb|ACS54940.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 427 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/260 (35%), Positives = 139/260 (53%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ + L+ P ++A L +LD TG V+A D +PASLTK+M Sbjct: 1 MRKLWAAVLTVTLAVSAPLAALAGNASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLL 260 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDAKMAGLL 256 >gi|240850298|ref|YP_002971691.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240267421|gb|ACS51009.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 449 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 132/228 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + + PASLTK+MT Y++F ++ ++ TPI +S A+ PP+ Sbjct: 45 VIDATTGKTLFQANATLKRYPASLTKMMTLYLLFEAMQMRRVTPNTPIPVSHYAAMRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G T++ ++A K LI +SAND+A AIAE L +EKKF Q M ++ LG+ THF Sbjct: 105 KIGFKAGQTISAESAAKALITRSANDVAAAIAEYLGGSEKKFAQMMTIKARKLGMKHTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TARD+A LS ++ FP+ F+ K +G K + N V G Sbjct: 165 ANASGLPDVHNYSTARDIATLSLALRKHFPKQYKLFKTKSFNFRGHKINSHNKLVKIMKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SG N+ S +S++AV++G R++ ASLL Sbjct: 225 VDGIKTGYTQMSGSNLATSMRLDGRSVVAVVMGGKSSTARDEHMASLL 272 >gi|315121863|ref|YP_004062352.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495265|gb|ADR51864.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 357 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 3/223 (1%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MT Y++F L+ KK L T I +SK A+ PPS K+ + T++ + LI Sbjct: 80 PASLTKMMTLYIIFEHLQSKKMHLNTKIPVSKTATIQPPSKLYLKENTFFTVEQGILALI 139 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 +SAND++ A E + +EKKF M+N +K+LG++ T + NA G+ TTARD AI Sbjct: 140 TRSANDVSTAFGEFISGSEKKFAILMSNKAKSLGMNHTTYKNASGLHDKNQKTTARDQAI 199 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L I+ +FPQY YF I+ + + K N N + G DG+KTG+T SGFNIVAS Sbjct: 200 LGITIRKNFPQYYKYFSIRKFQYRNKIILNHNKLINKIHGIDGIKTGYTRDSGFNIVASL 259 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--KTDRKKI 273 + S+IAV++G R++ + L++ F N KT K I Sbjct: 260 QNENNSIIAVVMGMPTCQKRDQKALELIN-SFLNTKKTKHKPI 301 >gi|257092335|ref|YP_003165976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044859|gb|ACV34047.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 378 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 138/235 (58%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L++ +G +A PD +PASLTKLMTAY+ F+ LK+ + P+ +S+ A + Sbjct: 35 WLLIEAASGQELAAQAPDQRLDPASLTKLMTAYLSFAALKQGTLKVDQPVPVSQKAWKTG 94 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ + +++ LK +IV+S ND VA+AE++ E+ F Q MN ++ LG+ + Sbjct: 95 GSRMFIQVGTQVKVEDLLKGMIVQSGNDACVALAEAIAGDEENFAQMMNREAQRLGMKGS 154 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N+ G+ HYTTARD+A L+ + DFP +Y Y+ +K PN N + Sbjct: 155 SFRNSSGLPDPQHYTTARDLATLAGALIRDFPDEYAKYYSLKEFRYNNITQPNRNRLLWI 214 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A+G+ +V+SA +G + L++V+LGA + R + S LL+ GF Sbjct: 215 DPTVDGLKTGHTEAAGYCLVSSAKRGPRRLLSVVLGAPSDSVRAQESLKLLNYGF 269 >gi|296533026|ref|ZP_06895674.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296266655|gb|EFH12632.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 293 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 149/266 (56%), Gaps = 3/266 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKL 59 +R+ ++ A +L N+ P L+ A+ Y + ++ N+G+V+ D P +PASLTK+ Sbjct: 7 LRRLGLLAATTVLFNL-PGLAQAQIGSARYAAVVIEPNSGNVLFGANADAPRHPASLTKM 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+VF L+ + L + +++ A+ PPS G T+T++NA+ L+ KSAND+ Sbjct: 66 MTLYMVFDALRAGRLELDQRLEMTETAASRPPSKLGLPPGRTITVENAIYALVTKSANDV 125 Query: 120 AVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A + E+L +E +F Q M ++ +G+++T F NA G+ TTA DMA L R+ Sbjct: 126 AALLGETLGAGSEARFAQMMTLRARAMGMTSTTFRNASGLPDVEQITTAHDMATLGRRLL 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP+ HYF + + N N + + G DG+KTG+ SGFNIV SA + + Sbjct: 186 HDFPERYHYFGTRTHRMGSIALRNHNRMLDEYEGVDGIKTGYINDSGFNIVTSARRSNVR 245 Query: 239 LIAVILGALDRNTRNKVSASLLSMGF 264 L+ + G R++ +A+LL GF Sbjct: 246 LVVAVFGGSSWVERDRHAAALLERGF 271 >gi|78485976|ref|YP_391901.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thiomicrospira crunogena XCL-2] gi|78364262|gb|ABB42227.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Thiomicrospira crunogena XCL-2] Length = 396 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 137/234 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G +IA N+P+ PASLTK+MT YVV + L L +TIS A + P Sbjct: 46 YILIDFNSGKIIASNHPEMRVEPASLTKIMTGYVVINELANGNIHLDDMVTISPKAWKMP 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +++ N +K ++++S ND +VA+AE + +E+ F + MN + +LG+ T Sbjct: 106 GSKMFIEVGKKVSVKNLIKGMVIQSGNDASVALAEHIAGSEEVFAELMNKYAASLGMDGT 165 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+MNA G+ HYTTA+D++IL+ + T FP+ ++ K G N N + Sbjct: 166 HYMNATGLPNPDHYTTAQDLSILARALITKFPEEYKWYAQKKFTFNGITQYNRNKLLWQD 225 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T ++G+ +VASA + D LI+V+LG TR + S LL+ GF Sbjct: 226 PSVDGLKTGHTESAGYCLVASAKRDDMRLISVVLGTDGAKTRIQESQKLLNYGF 279 >gi|149909670|ref|ZP_01898322.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp. PE36] gi|149807184|gb|EDM67139.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp. PE36] Length = 388 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 135/240 (56%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G VIAE D PASLTK+MT+YV+ ++ L +TISKNA Sbjct: 38 FILIDFDSGKVIAEKNADDSLKPASLTKMMTSYVIGQEIRSGNINLDDQVTISKNAWAKN 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T+T++ + +IV+S ND VA+AE + TE F Q MN+ SK LG+ Sbjct: 98 FPDSSKMFIEVGKTITVEKLNQGIIVQSGNDACVAMAEYIAGTEGAFAQLMNSWSKQLGM 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ATHF N+HG+ YTTARDMA L + D P+ + K G N N Sbjct: 158 DATHFANSHGLDSKDQYTTARDMATLGQALIRDVPEEYRIYSQKKFTYNGITQYNRNGLL 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA + + L+AV+LG + R S LL+ GF Sbjct: 218 W--DKSMNVDGIKTGHTSGAGYNLVSSATKDNMRLVAVVLGTKSADARKAESKKLLNFGF 275 >gi|330993785|ref|ZP_08317717.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp. SXCC-1] gi|329759053|gb|EGG75565.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp. SXCC-1] Length = 371 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+++ PD PASLTKLMT Y+ F ++ + L + +S +A+ PS Sbjct: 42 VVDARTGAVLSQQDPDLRRYPASLTKLMTLYLTFKAVRTGQVTLEQQMPVSVHAASMEPS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-EKKFVQHMNNTSKNLGLSATH 151 + GS++T++ A+ L+ KSAND A A+ E L E +F M + LG+ T Sbjct: 102 KLGLRPGSSLTVEQAVLALVTKSANDAACALGEFLGGGDETRFAAMMTREAGRLGMYDTV 161 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ T+ARD+A+L+ + D+ +Y HYF + G G PN + +G + Sbjct: 162 FRNASGLPNPEQMTSARDLAVLARHLIVDYGEYYHYFAVPGFYFHGHAVPNHDPMLGAYP 221 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG+T +G N+V SA++ + LI V++GA + RN A LL F Sbjct: 222 GADGLKTGYTDEAGHNLVTSAVRDNVRLIGVVMGAKSNSRRNTTMAELLDASF 274 >gi|159184788|ref|NP_354511.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58] gi|159140076|gb|AAK87296.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58] Length = 499 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 2/252 (0%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 F+ +A+ + + S+ P Y ++D +G V+ PD PASLTK+MT Sbjct: 25 FVRFVALTLAAAFIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMMT 84 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F L + L + +T+S NA++ PPS + G ++T++ A+ L+ +SAND+A Sbjct: 85 LYLTFEALNSGRISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMAT 144 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E L +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ F Sbjct: 145 ALGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHF 204 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY YF + + N N VGT G DG+KTG+T A+G N+ SA +S++A Sbjct: 205 PQYYGYFSTRTFNFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVA 264 Query: 242 VILGALDRNTRN 253 V+LG R+ Sbjct: 265 VVLGGRSSAARD 276 >gi|258544105|ref|ZP_05704339.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis ATCC 15826] gi|258520658|gb|EEV89517.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis ATCC 15826] Length = 374 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 141/264 (53%), Gaps = 2/264 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R F +IIA A+ S + F A + Y L+D +G + D PAS+TKLM Sbjct: 5 LRLFTLIIA-AVYSGVV-FAQAAPELPVKSYILMDAASGQTLVGKNADEKLPPASITKLM 62 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+V L K + TPIT+S+NA + S + + +++ L+ LIV+S ND A Sbjct: 63 TAYLVVEALDSGKLTMETPITVSQNAYKQEGSRMFIEVNKQVRVEDLLQGLIVQSGNDAA 122 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+AE L + + F MN + LG+ TH+ N G+ HYTTARD+AILS I D Sbjct: 123 MALAEYLGGSTEGFTGMMNRKAAELGMKDTHYTNPTGLPDPQHYTTARDIAILSRHIIND 182 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 PQY HY+ K K N N + DG+KTG T +G+ + +S +GD I Sbjct: 183 HPQYYHYYGQKSYTYNKIKQDNRNRLLWRNASIDGLKTGHTKEAGYCLASSEKRGDIRFI 242 Query: 241 AVILGALDRNTRNKVSASLLSMGF 264 AV+LGA + R S +L + GF Sbjct: 243 AVVLGADKESDRYDASQALFNYGF 266 >gi|254474184|ref|ZP_05087575.1| penicillin-binding protein [Pseudovibrio sp. JE062] gi|211956714|gb|EEA91923.1| penicillin-binding protein [Pseudovibrio sp. JE062] Length = 485 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 2/251 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 Q + IIA+++ P S+AE N ++D TG V+ N + PAS TK+MT Sbjct: 18 QAVGIIAVSVAIATAP--SVAEANSKYAGIVVDAKTGKVLYANNANARRYPASTTKIMTL 75 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV+F L+ + L T + +S+ A+ PP+ + G ++ + +A+ LI KSAND + Sbjct: 76 YVLFEELEAGRVSLNTKMKVSRYAAGRPPTKLGLRVGGSLRVKDAIYALITKSANDASTV 135 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE + +EK F + M T++ +G+ T F N HG+ TTA D+A+L I+ FP Sbjct: 136 IAEHISGSEKAFGRRMTQTARAIGMRNTTFRNPHGLPNSKQVTTAADLALLGRAIQDRFP 195 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +Y YF + G++ N N +G G DG+KTG+T ASGFN+V + + ++ ++AV Sbjct: 196 KYYKYFNTRSYTYAGRRMGNHNKLLGRVRGVDGIKTGYTNASGFNLVTNVKRDNRQIVAV 255 Query: 243 ILGALDRNTRN 253 +LG +R+ Sbjct: 256 VLGGRTGKSRD 266 >gi|121602290|ref|YP_988886.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis KC583] gi|120614467|gb|ABM45068.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis KC583] Length = 448 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 132/228 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F ++ ++ TPI IS AS PP+ Sbjct: 45 VIDANTGKTLFQANATMRRYPASLTKMMTLYMLFEAMQVRRVAPNTPIPISAYASTRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ ++ A K LI KSAND+A AI E L +E+KF Q M ++ LG+ T+F Sbjct: 105 KIGLKTGQTIPVEAAAKALITKSANDVAAAIGEYLGGSEQKFAQMMTVKARQLGMINTNF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+D+AILS ++ FPQ F+IK GK + N V T G Sbjct: 165 ANASGLPDTRNYSTAQDLAILSLALREHFPQQYKLFKIKSFVFHGKIINSHNKLVQTMKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SG N+ S G +S++AV++G R+ A+LL Sbjct: 225 VDGIKTGYTQMSGSNLATSMRLGGRSIVAVVMGGKSSVERDIHMANLL 272 >gi|332286510|ref|YP_004418421.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] gi|330430463|gb|AEC21797.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] Length = 418 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 135/236 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LD N+G +IA D P PASLTKLM+AYVVF L+ + L + +S+ A + Sbjct: 76 WMTLDVNSGQIIAAQNLDEPVEPASLTKLMSAYVVFDALENNRLSLEQKVPVSEKAWKTE 135 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K S +++D+ L+ +IV+S ND VA+AE++ +E FV MN + GL T Sbjct: 136 GSRMFIKVNSQVSVDDLLQGVIVQSGNDATVALAEAVAGSEDAFVTIMNEEAARQGLRDT 195 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G+ H TTARD+ L+ + TDFPQY+HY+ K K N N + + Sbjct: 196 HFENSTGLPGPTHLTTARDLGTLAKNLVTDFPQYLHYYSQKEFTYNNIKQNNRNRLLWSD 255 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+KTG T ++G+ +V +A++ + +++VI+GA R + S LL+ F N Sbjct: 256 PTVDGLKTGHTQSAGYCLVTTALRDGRRVVSVIVGAASDAARTENSLKLLNWSFQN 311 >gi|90420704|ref|ZP_01228610.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90334995|gb|EAS48756.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 313 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 8/248 (3%) Query: 14 SNIFPFLSIAETNKLPYYT--------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + + P+ + P +LD +G + E+ D PASLTK+MT Y++ Sbjct: 38 AGLLPYARVGAATATPGVAEVRGESTLVLDFASGRTLYEDAADGLRYPASLTKMMTLYLL 97 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + +++ + +S+NA+ PPS K G T+ + +A + + VKSAND+A IAE Sbjct: 98 FETIEAGRLSMSSELRVSENAASQPPSKLGLKAGETIRVADAAQAIAVKSANDVATVIAE 157 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F M ++ LG+S T F+NA G+ G +TARDMA L + FP Y Sbjct: 158 NLGGSEADFANAMTAKARALGMSRTRFVNASGLPDEGQISTARDMATLGRALLNRFPAYA 217 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F G + G+ Y TN +G+ G DG+KTG+ +GF++ A+A + + +I V++G Sbjct: 218 SLFTRTGFDYNGRHYNATNKLLGSVEGVDGLKTGYIRDAGFHLAATATRRGRRIIVVVMG 277 Query: 246 ALDRNTRN 253 RN Sbjct: 278 GRTGRERN 285 >gi|296534465|ref|ZP_06896895.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296265208|gb|EFH11403.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 305 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 133/235 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + PASLTK+MT Y++F +++ + L+T I +S++A+ PS Sbjct: 49 VMDAATGEELVSVNAGASRYPASLTKMMTLYMMFEAMQQGRMTLSTRIPVSRHAAGQEPS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GS+++ +A+ L+ KSAND+A A+AE L +E +F + M +++LG+ T F Sbjct: 109 KLGLKPGSSISARDAILALVTKSANDVAAAVAEHLGGSEVQFGRLMTRRAQSLGMRDTSF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA+LS + FPQ+ YF + +G+ + N + + G Sbjct: 169 RNASGLPDANQVTTARDMALLSRALIRHFPQHYAYFNARSFSWRGQTIRSHNRVLAEYDG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ADG+KTGF ASGFN+ +SA +G LI V+ G R+ +L GF + Sbjct: 229 ADGLKTGFIRASGFNLASSAERGGVRLIVVVFGGATSRERDDHVMALFDRGFQER 283 >gi|227821811|ref|YP_002825781.1| penicillin-binding protein [Sinorhizobium fredii NGR234] gi|227340810|gb|ACP25028.1| penicillin-binding protein [Sinorhizobium fredii NGR234] Length = 498 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D PASLTK+MT Y+ F L+ + +TP+ SK A+ PPS Sbjct: 49 VVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRISKSTPVPFSKKAAAEPPS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G +T++ A+ L+ +SAND A A+ E L +E++F + M N ++ LG++ T + Sbjct: 109 KLGVRAGKAITVEQAVLSLVTRSANDAATALGELLGGSEQRFARMMTNKARALGMTRTTY 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARD A L ++ FPQY YF + + N N +G G Sbjct: 169 RNANGLPNTEQKTTARDQARLGLALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+T ASGFN+V SA +S++AV++G R+ Sbjct: 229 VDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGTSGGARD 269 >gi|258541378|ref|YP_003186811.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256632456|dbj|BAH98431.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256635513|dbj|BAI01482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-03] gi|256638568|dbj|BAI04530.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-07] gi|256641622|dbj|BAI07577.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-22] gi|256644677|dbj|BAI10625.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-26] gi|256647732|dbj|BAI13673.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-32] gi|256650785|dbj|BAI16719.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653776|dbj|BAI19703.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-12] Length = 382 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++++ PD PASLTKLMT Y+ F+ L+ L + +S +AS PS Sbjct: 56 VVDARTGAVLSQDDPDLRRYPASLTKLMTLYMTFNALRAGAISLDQAVPVSIHASTMEPS 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 GS +T++ A+ L+ KSAND A A+ E + +E +F M + LG+S T Sbjct: 116 KLGLVPGSHLTVEQAILALVTKSANDAACALGELIGGGSEPQFAAMMTQQAHYLGMSNTT 175 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ TTARD++ L R+ +DFP+Y HYF + PN N + + Sbjct: 176 FRNASGLPDPDQMTTARDLSTLGRRLISDFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYA 235 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADGMKTG+T +G N+V SAI+ + L+ V++GA R+ V A+ L GF Sbjct: 236 GADGMKTGYTQEAGRNLVTSAIRDNVRLVGVVMGASSNTQRSLVMANQLDRGF 288 >gi|295694696|ref|YP_003587934.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295410298|gb|ADG04790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 405 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 154/291 (52%), Gaps = 8/291 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG ++ E D PAS+TK+MT Y+ F + + KA L + IS+NA Sbjct: 47 PSAVLMDAATGQILYEKGADDKRYPASMTKMMTLYLTFEAIHDGKAHLDDIVPISQNAYN 106 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S TL + + + V SAND AVAIAE + + +FV+ MN ++ LGL+ Sbjct: 107 TGGSEVYLDPREKFTLKDMITFVAVHSANDAAVAIAEYVGGSVGQFVKRMNEKAQELGLT 166 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWA 206 THF+N G+ HYTTA DMAIL+ + T +P+ + Y +I + I+ + TN Sbjct: 167 QTHFVNPDGLHDPNHYTTAMDMAILARDLITKYPEVLDYTKIHDMWIRNHTFNVSATNNL 226 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +G + G DG+KTGFT +G+ + A+A QG LI+VI+ D +R K + +LL GF N Sbjct: 227 LGKYPGMDGLKTGFTDQAGYCLTATAQQGGVRLISVIMKDPDDQSRQKDTTALLDYGFKN 286 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN--ISEEVCTTQKEIINYNTQMKEAKD 315 T ++K ++ EVP+ I TTQ + + +A D Sbjct: 287 FTPLS----LLKPGDPLDVKAEVPDGVIESLPVTTQVPLAPLVPEGTKADD 333 >gi|160892702|ref|ZP_02073492.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50] gi|156865743|gb|EDO59174.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50] Length = 464 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 142/246 (57%), Gaps = 8/246 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P+ L++ TG V+ E D PAS+TK+MT +VF +K ++ +T+S++A+ Sbjct: 111 PFCILMEATTGTVLYEKNADEARKPASVTKVMTLLLVFEAMKAGDYQMSDIVTVSEHAAS 170 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S F+ G T+++ +K +I+ S ND AVA+AE +E+ FVQ MN+ +K LG+ Sbjct: 171 MGGSQCFFETGEQQTVEDMIKCIIIASGNDAAVAMAEFTAGSEEAFVQRMNDRAKELGME 230 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---Y 200 THF+NA G+ GH T+ARD+AI+S ++ + P+ + Y I I +G+ Sbjct: 231 HTHFVNACGLDADGHETSARDIAIMSRQLIDEHPEILKYSGIWMDSIIHKTARGESRFDL 290 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + GA G+KTG+T + + + A+A + +LIAVI+GA ++ RNK L Sbjct: 291 ANTNKFLNIYTGATGLKTGYTATAKYCMSATANRNGITLIAVIMGAETKDIRNKEVCKLF 350 Query: 261 SMGFYN 266 G+ N Sbjct: 351 DYGYAN 356 >gi|329114967|ref|ZP_08243722.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum DM001] gi|326695410|gb|EGE47096.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum DM001] Length = 382 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 131/233 (56%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++++ PD PASLTKLMT Y+ F+ L+ L + +S +AS PS Sbjct: 56 VVDARTGAVLSQDDPDLRRYPASLTKLMTLYMTFNALRAGAISLDQAVPVSIHASTMEPS 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 GS +T++ A+ L+ KSAND A A+ E + +E +F M + LG+S T Sbjct: 116 KLGLVPGSHLTVEQAILALVTKSANDAACALGELIGGGSEPQFAAMMTQQAHYLGMSNTT 175 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ TTARD++ L R+ DFP+Y HYF + PN N + + Sbjct: 176 FRNASGLPDPDQMTTARDLSTLGRRLIADFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYA 235 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADGMKTG+T +G N+V SAI+ + L+ V++GA R+ V A+ L GF Sbjct: 236 GADGMKTGYTQEAGRNLVTSAIRDNVRLVGVVMGASSNTQRSLVMANQLDRGF 288 >gi|294084619|ref|YP_003551377.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664192|gb|ADE39293.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] Length = 437 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 143/254 (56%), Gaps = 5/254 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKL 59 +R F + + ++ + I+P ++A Y ++ ++ +G V+ D PASLTK+ Sbjct: 17 LRAFFIFMMLSCGALIWPQQAMASK----YASIVINAESGRVMYARNADAMRYPASLTKI 72 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y++F +K + + + I +SK A+ PS K G +++ + A+ L+ KSAND+ Sbjct: 73 MTLYLLFEEIKSGRMDMNSRIGVSKLAASRSPSKLYLKPGQSISAEQAIYALVTKSANDV 132 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A+AE++ TE+ F + M ++ LG+ T F NA G+ TTARDMA L+ ++ Sbjct: 133 ATAVAEAISGTERNFAKRMTRKARALGMRKTVFKNASGLPHSQQKTTARDMARLAVAMRR 192 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP+ YF + KG+K+ N N + + G DG+KTG+ ASGFN+VAS + L Sbjct: 193 DFPRLYRYFSTQNFNWKGRKFGNHNKLLAHYSGTDGIKTGYINASGFNLVASVKRHGVRL 252 Query: 240 IAVILGALDRNTRN 253 I VI G +R+ Sbjct: 253 IGVIFGGKTSRSRD 266 >gi|260459198|ref|ZP_05807453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259034752|gb|EEW36008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 128/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + PASLTK+MT Y+ F L + K TP+ S AS P+ Sbjct: 45 VVDAKTGKVLYSADANGRRYPASLTKMMTLYLTFEALAKGKISRNTPVVFSAKASAEAPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G ++T+D A+ ++ KSAND A A+ E + E F + M ++ LG++ T F Sbjct: 105 KLGVKPGGSVTVDTAILSIVTKSANDSATALGEMIGGNETNFARMMTAKARQLGMNGTVF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ G +TTARDMA L ++ FPQY YF + ++ N +G G Sbjct: 165 RNANGLPDPGQFTTARDMATLGIALREHFPQYYGYFSQRSFLYGRQRINGHNRLLGRIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASGFN+V+S G++ L+AV++G +R+ A+L+ Sbjct: 225 VDGIKTGYTRASGFNLVSSVSDGNRRLVAVVMGGTSGGSRDNQMAALI 272 >gi|90419583|ref|ZP_01227493.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90336520|gb|EAS50261.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 500 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 127/229 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N G V+ + D PASLTK+MT Y+ F LK + ++ + +S A+ PPS Sbjct: 54 VIDANNGQVLYNDRADEYRYPASLTKMMTLYMTFDALKSGRISMSDKMPVSAYAAARPPS 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST+T++ A+ L+ KSAND AV + E +E F M ++ +G+ T F Sbjct: 114 KIGLKAGSTLTVEEAVYSLVTKSANDAAVVLGEFQAGSESAFAARMTAKARQIGMPKTTF 173 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARDMA L ++ FP+Y F + +G++ N N +G G Sbjct: 174 RNANGLPDSEQKTTARDMATLGIALREHFPEYYKIFSTRSYSFRGRRLGNHNRVLGRVKG 233 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+ ASGFN+V S + +SL+AV++G +R+ LL+ Sbjct: 234 VDGIKTGYINASGFNLVTSIERDGKSLVAVVMGGRSGRSRDDHMVELLT 282 >gi|301630478|ref|XP_002944344.1| PREDICTED: d-alanyl-D-alanine carboxypeptidase dacC-like, partial [Xenopus (Silurana) tropicalis] Length = 294 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 136/243 (55%), Gaps = 10/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 39 YLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKIALAQKLPVSERAWKMP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND VA+AE + + + FV MN ++ LG++ T Sbjct: 99 GSRMFIDPKMQIPVDDLLKGMIVQSGNDATVALAEGVGGSVENFVHLMNEQARALGMTGT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTA+D+A+L R+ DFP+YMHY+ + G N N T Sbjct: 159 SYKNPEGLTEPGHSTTAKDLALLVQRLMQDFPEYMHYYATRHYAYPGTPKSNGN-NRNTL 217 Query: 211 L----GADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLS 261 L DG+KTG+T A+G+ +VA++ + G + L++++LG N R+ S LL+ Sbjct: 218 LFRDPTVDGLKTGYTAAAGYCLVATSRREFPQLGQRRLLSIVLGTASENARSNESQKLLN 277 Query: 262 MGF 264 G+ Sbjct: 278 WGY 280 >gi|317486130|ref|ZP_07944975.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6] gi|316922615|gb|EFV43856.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 137/237 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ PD PASLTK+M+ V F ++ K L+ I +S++A+ S Sbjct: 60 LMDARTGKILYSQNPDVRIPPASLTKIMSMMVTFDAIRSGKVKLSDQIRVSRHAARQGGS 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++L+ L + V S ND ++A+AE + + + FV+ MNN ++ +G+S++ F Sbjct: 120 RMGLRAGERVSLNRLLMGMAVSSGNDASMAVAERVGGSGRAFVKMMNNKARQIGMSSSTF 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +G+ G YTTARDMA L + + P + Y +++ L+ +G N N +G G Sbjct: 180 KTPNGLPAAGQYTTARDMARLGYVYLKNNPSALQYHRVRVLKHRGAVTTNKNPLLGACPG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ADG+KTG+ ASG+NI+++ +G+ LIAVILGA R+ L+ GF ++T+ Sbjct: 240 ADGLKTGWVTASGYNIISTVRRGNTRLIAVILGADSAGLRSHEVRRLVEAGFKSRTN 296 >gi|270160121|ref|ZP_06188777.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae D-4968] gi|289165102|ref|YP_003455240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Legionella longbeachae NSW150] gi|269988460|gb|EEZ94715.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae D-4968] gi|288858275|emb|CBJ12143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Legionella longbeachae NSW150] Length = 422 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G +IAE + PASLTK+MT YV+ + L ++ LT + +S+ A + Sbjct: 75 YILIDVNSGKIIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDNVRVSREAWKIG 134 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G + +++ LK +IV S ND VA+AE L TE F MN ++NLG+ + Sbjct: 135 GSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHLGGTENSFTDLMNQQAQNLGMKNS 194 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFPQY +++ K G + PN N + Sbjct: 195 HFTDSTGLPDPNLYTTAKDLAILGRALIIDFPQYYEWYKQKWFTYNGIRQPNRNRLLWRD 254 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +GF +V+SA + + L+AV+LG ++R S LL+ GF Sbjct: 255 NQVDGIKTGHTNDAGFCLVSSAKRDNMRLLAVVLGEPTDSSRADDSEKLLNYGF 308 >gi|325982907|ref|YP_004295309.1| beta-lactamase [Nitrosomonas sp. AL212] gi|325532426|gb|ADZ27147.1| Beta-lactamase [Nitrosomonas sp. AL212] Length = 373 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D TG V+A PASLTKLMTAYVVFS LK+ + L +S++A Sbjct: 31 FMLSDYQTGQVLAGQNVHERIEPASLTKLMTAYVVFSALKQGQLALNQTAVVSESAWRMI 90 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D ++ +IV+S ND +A+AE++ +E FV MN +K LG+ T Sbjct: 91 GSRMFIEPNKQVTVDELIRGMIVQSGNDACIALAETVAGSEANFVIIMNKEAKRLGMQNT 150 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N G+ GHYTTA D+ +L+ I DFP + + +K PN N + Sbjct: 151 HFTNTTGLPDPGHYTTAHDLTLLATAIIRDFPDFYPLYSLKEYTYNNITQPNRNRLLWID 210 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG+T A+G+ ++ SAI+ + LI+VI+GA N R+ S LL+ GF Sbjct: 211 PHVDGMKTGWTKAAGYCLITSAIRDKRRLISVIIGAKSANARSIESQRLLNYGF 264 >gi|92117941|ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91800835|gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 586 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 139/261 (53%), Gaps = 10/261 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF SI ++D N+G ++ PD +PASLTK+MT Y++F L K L Sbjct: 54 PFASI----------IVDANSGATLSSTNPDSLRHPASLTKMMTLYLLFERLDAGKINLD 103 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T + +S +A+ P+ + G T+ +++A+K L+ KSAND AV IAE++ E F + Sbjct: 104 TEMRVSGHAAAQDPTKLGLRSGQTIRVEDAIKGLVTKSANDAAVVIAEAVGGDEDDFARM 163 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG++ T + NA G+ TTARD A L ++ FP+Y YF +G Sbjct: 164 MTRKARALGMTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRG 223 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N +G+ G DG+KTG+ +SGFN+V + +G++ L+ V+LG +R+ Sbjct: 224 RTIRGHNHLLGSVDGVDGIKTGYIRSSGFNLVTNLKRGNRHLVGVVLGGRSSGSRDATMR 283 Query: 258 SLLSMGFYNKTDRKKINYIIK 278 LL+ R+ + I + Sbjct: 284 KLLTDNLDKAATRRTVAAITE 304 >gi|299135167|ref|ZP_07028358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298590144|gb|EFI50348.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 597 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 144/273 (52%), Gaps = 10/273 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF SI ++D N+G + D +PASLTK+MT Y++F L K L Sbjct: 54 PFASI----------VVDANSGATLQSTNADALRHPASLTKIMTLYMLFEQLDSGKLRLD 103 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + +S++AS P+ + G T+ +++A+K ++ +SAND AV +AE++ +E+ F + Sbjct: 104 SQLEVSRHASVQAPTKLGLRPGQTIRVEDAIKGIVTRSANDAAVVVAEAIGGSEENFCKM 163 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG+S T ++NA G+ TTARD A L I+ FP Y YF +G Sbjct: 164 MTRKARALGMSKTTYVNASGLPDDDQITTARDQATLGRAIQDRFPTYYRYFSTSVFTWRG 223 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N +G G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ Sbjct: 224 SPIRNHNHLLGQMDGVDGIKTGYVRASGFNLVTNIRRGNRHLVGVVLGGRSGGSRDATMR 283 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 LL+ R+ + I + + S+E P Sbjct: 284 RLLAEHLDEGATRRTVAAITERNPSRMASDEEP 316 >gi|319899049|ref|YP_004159142.1| penicillin-binding protein [Bartonella clarridgeiae 73] gi|319403013|emb|CBI76568.1| penicillin-binding protein [Bartonella clarridgeiae 73] Length = 449 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 137/242 (56%), Gaps = 1/242 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F +K ++ TPI IS A+ PP+ Sbjct: 45 VIDANTGKTLFQANATLKRYPASLTKMMTLYMIFEAMKNRRITPNTPIPISNYAATRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+++++A K LI KSAND+A AI E L +E+KF Q M ++ LG+ T F Sbjct: 105 KMGIKAGQTISVESAAKALITKSANDVATAIGEYLGGSEQKFAQMMTVKARKLGMKNTRF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+DMA L+ ++ FP+ F++ +G+ + N + T G Sbjct: 165 ANASGLPDTRNYSTAQDMATLALALRKHFPEQYKLFKMTHFRFRGQTINSHNTLIKTIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T SG N+ S +S++AV++G TR+ ASLL + K R K Sbjct: 225 IDGIKTGYTQMSGSNLATSMRIDGRSIVAVVMGGKSSTTRDIHMASLLKQ-YLPKASRTK 283 Query: 273 IN 274 + Sbjct: 284 TD 285 >gi|288957533|ref|YP_003447874.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288909841|dbj|BAI71330.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 474 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 129/232 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + D +PASLTK+MT Y+ F L++ + L + +S A P+ Sbjct: 89 VVDARTGQVLIDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMSPT 148 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+ ++ A+ L+ KSAND AV +AE+L TE +F + M ++ LG+ T + Sbjct: 149 KLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHTVY 208 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD A LS + D +Y YF + G+ PN N + + G Sbjct: 209 RNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRYEG 268 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T ASGFN+ ASA++ + L+ V+LG +R+ A+LL F Sbjct: 269 MDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALLDQAF 320 >gi|13470857|ref|NP_102426.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14021600|dbj|BAB48212.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 485 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 129/232 (55%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P ++D TG V+ + PASLTK+MT Y+ F + + K TP+ S AS Sbjct: 41 PAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLYLTFEAMAKGKISRNTPVVFSAKASA 100 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P+ K G +++++ A+ ++ KSAND A A+ E L E F + M ++ LG++ Sbjct: 101 EAPTKLGVKPGGSVSVETAILSIVTKSANDSATALGEMLGGDETTFARMMTAKARALGMN 160 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 T F NA+G+ G +TTARDMA L ++ FPQY YF + ++ N +G Sbjct: 161 GTVFRNANGLPDPGQFTTARDMATLGIALREHFPQYYGYFSQRSFLYGRQRINGHNRLLG 220 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G DG+KTG+T ASGFN+V+S G++ L+AV++G +R+ ASL+ Sbjct: 221 RIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVVMGGTSGGSRDNQMASLI 272 >gi|209884896|ref|YP_002288753.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] gi|209873092|gb|ACI92888.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] Length = 587 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 144/261 (55%), Gaps = 10/261 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF SI ++D N+G + D +PASLTK+MT Y++F ++ K L Sbjct: 53 PFASI----------IVDANSGATLQSTNADATRHPASLTKIMTLYMLFEQIENGKLRLD 102 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + +S++AS P+ + G T+ +++A+K ++ +SAND +V +AE++ +E+ F + Sbjct: 103 SQLEVSRHASAQAPTKLGLRPGQTIRVEDAIKGIVTRSANDASVVVAEAIAGSEEGFAKM 162 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG++ T ++NA G+ TTARD A L I+ FP+Y YF +G Sbjct: 163 MTRKARALGMNNTTYVNASGLPDSDQITTARDQATLGRAIQDRFPKYYRYFSTSVFTWRG 222 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N +G G DG+KTG+ ASGFN+V++ +G++ L+ V+LG R+ Sbjct: 223 RPIRNHNHLLGRVEGVDGIKTGYIRASGFNLVSNIRRGNRHLVGVVLGGRTSGARDATMR 282 Query: 258 SLLSMGFYNKTDRKKINYIIK 278 LL+ + + R+ + I + Sbjct: 283 KLLATYLDDASTRRTVAAITE 303 >gi|153873396|ref|ZP_02001993.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS] gi|152070138|gb|EDN68007.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS] Length = 393 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G V+ E D PASLTKLMTAY+VF LK K LT P+ IS+ A + Sbjct: 36 YILQDFYSGKVLMEKKADERLEPASLTKLMTAYLVFQKLKIGKIKLTDPVKISQKAWKMG 95 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G+ + +D LK +I++S ND +VA+AE + TE+ F MN ++ LGL T Sbjct: 96 GSRMYLDPGTFVPVDLLLKGMIIQSGNDASVALAELIGGTEQAFATLMNEQAQRLGLKNT 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT- 209 H++N+ G+ HY+TARD A ++ + DFP Y ++ N N + Sbjct: 156 HYVNSTGLPDEQHYSTARDSATIAQALIYDFPSYYRWYSGSEFTYNNITQTNRNRLLRRK 215 Query: 210 ----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T A+G+ +VASAI+ + LI+V+LG + R +VS +L GF Sbjct: 216 PPLKGMKVDGMKTGYTDAAGYCLVASAIRKNMRLISVVLGTKNEKARTEVSERMLDYGF 274 >gi|120609035|ref|YP_968713.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1] gi|120587499|gb|ABM30939.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1] Length = 393 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 139/247 (56%), Gaps = 18/247 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD G V+A D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 43 YLLLDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMP 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ +K +IV+S ND +A+AE + T + FV+ MN+ ++ LG+ T Sbjct: 103 GSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQARALGMKNT 162 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD+++L+ R+ DFP+YMHY+ K YP T + GT Sbjct: 163 AYKNPEGLTEPGHTTTARDLSVLATRLMKDFPEYMHYYSTKHY-----AYPGTPPSNGTN 217 Query: 211 LGA--------DGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSA 257 A DG+KTG T A+G+ +VA++ + G + L++++LGA + R S Sbjct: 218 RNALLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNIGQRRLLSIVLGAASESARANESQ 277 Query: 258 SLLSMGF 264 LL+ G+ Sbjct: 278 KLLNWGY 284 >gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040375|gb|ACT57171.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 141/267 (52%), Gaps = 12/267 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FL II ++M S E + P Y+ ++D N + D P PASLTK+MT Sbjct: 36 FLSIIMISMAS---------ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMT 85 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y++F +L+ KK L T I +SK A+ PS K+ + T + + LI +SAND++ Sbjct: 86 LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A E + +EKKF M+N +K +G+ T + NA G+ TTARD AIL ++ +F Sbjct: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY YF I+ + + N N + DG+KTG+T SGFNIV S D ++A Sbjct: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268 V++G R++ + L++ KT Sbjct: 266 VVMGMPTSQERDQKALELITSFLEKKT 292 >gi|325292859|ref|YP_004278723.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325060712|gb|ADY64403.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 480 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 134/248 (54%), Gaps = 2/248 (0%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +A+ + + S+ P Y ++D TG V+ PD PASLTK+MT Y+ Sbjct: 5 VALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGEDPDGLRYPASLTKMMTLYLT 64 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L + L + + +S NA++ PPS + G ++T++ A+ L+ +SAND+A A+ E Sbjct: 65 FEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSITVEQAILALVTRSANDMATALGE 124 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ FPQY Sbjct: 125 YIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYY 184 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 YF + + N N VGT G DG+KTG+T A+G N+ SA +S++AV+LG Sbjct: 185 GYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTGYTRAAGSNLATSAQLDGRSIVAVVLG 244 Query: 246 ALDRNTRN 253 R+ Sbjct: 245 GRSSAARD 252 >gi|319405849|emb|CBI79481.1| Penicillin-binding protein [Bartonella sp. AR 15-3] Length = 449 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 5/284 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + PASLTK+MT Y++F +K + TPI IS A+ PP+ Sbjct: 45 VIDANTGKTLFQANAALKRYPASLTKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T++++ A K LI KSAND+A AI E L +E+KF Q M ++ LG+ T F Sbjct: 105 KIGIKAGQTISIEAATKALITKSANDVAAAIGEYLGGSEQKFAQMMTIKARKLGMKNTRF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+D+A L+ ++ FP+ F+ +G+ N N + T G Sbjct: 165 ANASGLPDTRNYSTAQDIATLALALRKHFPEQYKLFKTTHFTFRGQTINNHNTLIKTIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T SG N+ S +S++AV++G TRN A+LL + KT R + Sbjct: 225 VDGIKTGYTQMSGSNLATSMRIDGRSIVAVVMGGKSSTTRNIHMANLLKQ-YLPKTSRIE 283 Query: 273 INYIIKDFYQQNL----SNEVPNISEEVCTTQKEIINYNTQMKE 312 N + L + +P I + + + EI + T + E Sbjct: 284 TNKNLVATVHYKLPTVSATPIPIIKDNLINSDDEISSLLTALAE 327 >gi|54294448|ref|YP_126863.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens] gi|53754280|emb|CAH15757.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens] Length = 430 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 83 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 143 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 203 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 262 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 263 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSESVRADDSEKLLNYGF 316 >gi|115523726|ref|YP_780637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] gi|115517673|gb|ABJ05657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] Length = 385 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 128/211 (60%), Gaps = 8/211 (3%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 F+ G+ +T+DNALK+++VKSAND+AV +AE + + F + MN ++ LG++ T+++N Sbjct: 3 FRAGTQVTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSEQMNRAAQRLGMTQTNYVNP 62 Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215 +G+ G T+ARD+AIL+ I D P+Y ++ I + + PN N +G + GADG Sbjct: 63 NGLPADGQVTSARDLAILARAIIHDLPEYEYFVHIPAIRFGKRVTPNFNRLIGRYPGADG 122 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 MKTGF CASGFN+VASA + + LIA++LGA R + LL GF ++++ Sbjct: 123 MKTGFICASGFNLVASATRNGRRLIAIVLGAPSSQARALKAMQLLERGF----GANQLSW 178 Query: 276 IIKDFYQ-QNLSN---EVPNISEEVCTTQKE 302 + NL+ PN+ +E+C +++ Sbjct: 179 LQPALGSVDNLAPIDAAPPNLRDEMCGPKRK 209 >gi|110632991|ref|YP_673199.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110283975|gb|ABG62034.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 287 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 3/241 (1%) Query: 14 SNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 S + P + E+ K Y +++ D +G ++ + D P PASLTK+MT Y++F + Sbjct: 29 SAVAPLVQPIESEK--YSSIVVDAGSGEILHQYAADAPRYPASLTKMMTLYLLFEAIDSG 86 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 T+ IT S A+ PPS + G + + A+ L VKSAND+A A+AE L TE+ Sbjct: 87 ILSPTSRITASAYAASRPPSKLGLRPGDSFDVQTAILALCVKSANDVAAAVAEHLGGTEQ 146 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +F M ++ LG+ +T F NA G+ G TTARDMA+L+ + FP + H F + Sbjct: 147 QFAGMMTAKARQLGMRSTVFTNASGLPDSGQMTTARDMALLALALHNRFPHHYHVFANQS 206 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G+ N +G G DG+KTG+ ASG+NI SA +G + ++ +++G +R Sbjct: 207 FAHEGRTIKGHNDLLGRVDGVDGIKTGYIRASGYNIATSAARGRKRIVVIVMGGDTARSR 266 Query: 253 N 253 N Sbjct: 267 N 267 >gi|319783686|ref|YP_004143162.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169574|gb|ADV13112.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 469 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 140/257 (54%), Gaps = 4/257 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++IIA+AM F F +A + ++ D TG V+ + PASLTK+MT Y Sbjct: 19 MMIIALAM---TFVFGDVASSLAAKQAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F + + K TP+ S AS P+ K G ++T++ A+ ++ KSAND A A+ Sbjct: 76 LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVETAILSIVTKSANDSATAL 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E L E F + M ++ LG++ T F NA+G+ G +TTARDMA L ++ FPQ Sbjct: 136 GEMLGGNETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y YF + ++ N +G G DG+KTG+T ASGFN+V+S G++ ++ V+ Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRIVGVV 255 Query: 244 LGALDRNTRNKVSASLL 260 +G +R+ ASL+ Sbjct: 256 MGGSSGRSRDNQMASLI 272 >gi|325265494|ref|ZP_08132216.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324029273|gb|EGB90566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 423 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 135/246 (54%), Gaps = 12/246 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D PAS+TK+MT ++F L + K L +T S+ A+ Sbjct: 71 PSAVLMEASTGEVIFEKDADTARPPASVTKIMTMLLIFDALADGKIKLEDQVTTSEFAAS 130 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D LK + V SAND VA+AE +C E++FV+ MN +K LG+ Sbjct: 131 MGGSQVFLEPGETQTVDTMLKCISVASANDACVAMAEYICGNEEEFVKQMNERAKGLGME 190 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 THF+N +G+ GH TTARD+A++S + T +PQ Y I KG G Sbjct: 191 NTHFVNCNGLDVDGHVTTARDIALMSREMITKYPQIHDYCMIWMENITHTTKKGTTEFG- 249 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN V + A G+KTG T + F + A+A + D +IAVI+ A D R K + + Sbjct: 250 -LTNTNKLVRQYEYATGLKTGSTGLAKFCVSATAKKNDIEMIAVIMAAGDSKARFKDATT 308 Query: 259 LLSMGF 264 LL+ GF Sbjct: 309 LLNYGF 314 >gi|121608233|ref|YP_996040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verminephrobacter eiseniae EF01-2] gi|121552873|gb|ABM57022.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Verminephrobacter eiseniae EF01-2] Length = 402 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 10/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD V+A D P ASLTKLMTAY+VF L+ +K L + +S+ A + P Sbjct: 52 YILLDVTANQVLAAKNIDAPVEQASLTKLMTAYLVFDALRAEKISLQQNLPVSERAWKMP 111 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ LK +IV+S ND A+A+AE + T + FV+ MN +K LG+ +T Sbjct: 112 GSRMFIDPTMQVPVEDLLKGMIVQSGNDAAMALAEGVGATAENFVKLMNEQAKALGMQST 171 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH +TARD+ +L+ R+ DFPQ+MHY+ K G N N T Sbjct: 172 SYKNPEGLTEPGHLSTARDLGLLATRLMKDFPQHMHYYATKQYSYPGTPASNAN-NRNTL 230 Query: 211 L----GADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLS 261 L DG+KTG T A+G+ +VA+A + G + L++++LGA + R S LL+ Sbjct: 231 LYRDPTVDGLKTGHTAAAGYCLVATAKREFPGLGQRRLLSIMLGAASESARANESQKLLN 290 Query: 262 MGF 264 G+ Sbjct: 291 WGY 293 >gi|160895834|ref|YP_001561416.1| serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans SPH-1] gi|160361418|gb|ABX33031.1| Serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans SPH-1] Length = 389 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 18/247 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D V+ D P ASLTKLMT Y+VF L+ KK L + +S+ A + P Sbjct: 39 YLLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ +K +IV+S ND +A+AE + + + FV+ MN +K LG+ T Sbjct: 99 GSRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENFVRLMNEQAKALGMKNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K YP T + GT Sbjct: 159 SYKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKY-----FYPGTPASNGTN 213 Query: 211 LGA--------DGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSA 257 + DG+KTG T A+G+ +VA+A + G + LI+++LGA N R S Sbjct: 214 RNSLLFRDPTVDGLKTGHTAAAGYCLVATAKRDLPNVGSRRLISIVLGAASENARANESQ 273 Query: 258 SLLSMGF 264 LL+ G+ Sbjct: 274 KLLNWGY 280 >gi|254719233|ref|ZP_05181044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|265984229|ref|ZP_06096964.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306837982|ref|ZP_07470840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] gi|264662821|gb|EEZ33082.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306406906|gb|EFM63127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] Length = 472 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 128/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + PD PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VIDANTGKTLFSANPDAQRYPASLTKMMTLYMLFEAIHAGRINKNTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KMGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF E +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|296107091|ref|YP_003618791.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99 Alcoy] gi|295648992|gb|ADG24839.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99 Alcoy] Length = 407 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 60 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDLVRVSRDAWQTG 119 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 120 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 179 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 180 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 239 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 240 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGF 293 >gi|319408389|emb|CBI82044.1| penicillin-binding protein [Bartonella schoenbuchensis R1] Length = 449 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG + + PASLTK+MT Y++F ++ ++ TPI IS A+ PP+ Sbjct: 45 VIDAHTGKTLFQANATLKRYPASLTKMMTLYMLFEAMEVRRVTPNTPIPISAYAAARPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G T++++ A K LI KSAND+A A+ E L +E KF + M ++ LG++ T F Sbjct: 105 KIGFKAGQTISVEEAAKALITKSANDVATAVGEYLGGSEPKFARMMTVKARKLGMTNTRF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TA+DMA L+ ++ FPQ F+ +GK N N V T G Sbjct: 165 ANASGLPDARNYSTAKDMATLALALRKHFPQQYKLFKTTSFSFRGKTINNHNKLVKTIKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T SG N+ S +S++AV++G R+ +LL+ + + RKK Sbjct: 225 VDGIKTGYTQMSGSNLATSMHIEGRSIVAVVMGGKSSTERDIHMTNLLNR-YLPRASRKK 283 Query: 273 IN-YII 277 N Y++ Sbjct: 284 TNGYLV 289 >gi|89902561|ref|YP_525032.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens T118] gi|89347298|gb|ABD71501.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Rhodoferax ferrireducens T118] Length = 394 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 40/294 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L+ +A AM ++ A+T + P Y L D +AE D P AS Sbjct: 2 MKKLLLTLAAAMCLSVS-----AQTPQPPEIAARSYLLFDITANQFLAEKDIDSPVEQAS 56 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMTAY+VF L+ KK L + +S++A + P S + +++ LK +IV+S Sbjct: 57 LTKLMTAYIVFDALRSKKIDLKQMLPVSEHAWKMPGSRMFIDPKMKVPVEDLLKGMIVQS 116 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +A+AE + T ++FVQ MN +K LG+ +T++ N G+ + GH TTARD++IL+ Sbjct: 117 GNDATMALAEGVGGTVERFVQLMNEQAKALGMKSTNYKNPEGLTEAGHTTTARDLSILAT 176 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG--------ADGMKTGFTCASGFN 227 R+ DFP Y+ Y+ IK +YP T A G+ DG+KTG T A+G+ Sbjct: 177 RLMRDFPDYVAYYAIKQY-----RYPGTPAANGSNRNLLLFRDPTVDGLKTGHTDAAGYC 231 Query: 228 IVASAIQ-----------------GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++A+A + G + L++++LGA N+R S LL+ G+ Sbjct: 232 LIATAKRDFVGLGAPAAAGSPGATGSRRLLSIVLGATSENSRANESQKLLNWGY 285 >gi|212636662|ref|YP_002313187.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3] gi|212558146|gb|ACJ30600.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3] Length = 421 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y LLD NTG +IAEN NPASLTK+MT+YV+ +K + +TISKNA Sbjct: 71 YVLLDYNTGQIIAENNAYESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKNAWSKN 130 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T++++ K +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 131 FPDSSKMFIEVGKTVSVEELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGM 190 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMAIL I D P+ ++ K G K N N Sbjct: 191 QDSYFENSHGLDSDNHKTTAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLL 250 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+V SA + LI+V++G R S LL+ GF Sbjct: 251 WDKS--LNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSETARKAESKKLLNYGF 308 >gi|307610210|emb|CBW99765.1| hypothetical protein LPW_15321 [Legionella pneumophila 130b] Length = 430 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 83 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 143 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 203 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 262 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 263 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGF 316 >gi|52841739|ref|YP_095538.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628850|gb|AAU27591.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 430 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 83 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 143 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 203 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 262 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 263 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGF 316 >gi|54297421|ref|YP_123790.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris] gi|53751206|emb|CAH12617.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris] Length = 430 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 83 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 143 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 203 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 262 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 263 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGF 316 >gi|51473579|ref|YP_067336.1| D-alanyl-D-alanine carboxypeptidase. [Rickettsia typhi str. Wilmington] gi|51459891|gb|AAU03854.1| D-alanyl-D-alanine carboxypeptidase [Rickettsia typhi str. Wilmington] Length = 306 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 147/274 (53%), Gaps = 8/274 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 F+VI A +S + +TNK P T ++D G V+ + PASLTKLMT Sbjct: 11 FIVIFCFAPISEAKKI--VKKTNKYPVQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y++F ++ K L + +S AS+ P + G +T+ +A+ LI+KSAND+AV Sbjct: 69 LYLMFEAIESGKLSLDKKLLVSAKASKMPHCKLGLRAGDNITVRDAINGLIIKSANDVAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + +EK F MN +K LG+ T F NA G+ TTARD+A L+ +K D+ Sbjct: 129 TVAEGMKGSEKSFAHLMNVKAKTLGMKHTFFKNASGLHDPLQQTTARDIAKLAIALKRDY 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +F +G N + GA+GMKTGF +G+N+V +A + ++SLIA Sbjct: 189 PKYYPFFSKTSFVFRGNVINGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRKNKSLIA 248 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 VI GA +R++ LL F KT INY Sbjct: 249 VITGAKSAASRDQKMIRLLDHHFGVKT----INY 278 >gi|148359042|ref|YP_001250249.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str. Corby] gi|148280815|gb|ABQ54903.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str. Corby] Length = 430 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 135/234 (57%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L + +S++A + Sbjct: 83 YILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDLVRVSRDAWQTG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G +++++ LK +IV S ND VA+AE L +E F MN ++NLG+ + Sbjct: 143 GSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNS 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G + PN N + Sbjct: 203 HFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRD 262 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + L+AV+LG + R S LL+ GF Sbjct: 263 SQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGF 316 >gi|46201033|ref|ZP_00055930.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 419 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 128/232 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ PD PASLTK+MT +++F L + + + T S +A+ PS Sbjct: 25 VIDAQTGSVLHAANPDARSYPASLTKVMTLFLLFDELDSGRIRMDSKFTASAHAAAQSPS 84 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++++N + L+ KSAND AV AE + TE KF Q M ++ LG+ T + Sbjct: 85 KLGLEPGETISVENLILALVTKSANDAAVVAAEGVGGTESKFAQMMTRKAQALGMRNTVY 144 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G +T RD AIL+ + P Y YF + +G+ N + + G Sbjct: 145 RNASGLPDTGQVSTVRDQAILARALIRSHPGYYKYFSTRQFVYEGQPINTHNRLMLRYQG 204 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG+KTG+ ASGFN+++SA +GDQ +I V+ G +R+ A LL GF Sbjct: 205 ADGIKTGYIHASGFNLISSAKRGDQRIIGVVFGGATATSRDNHMAQLLDKGF 256 >gi|239904889|ref|YP_002951627.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] gi|239794752|dbj|BAH73741.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] Length = 386 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 135/233 (57%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + NTG V+ E PD PASLTK++T Y++F +++ + I +S A+ S Sbjct: 124 LWNMNTGEVLYEQNPDVQIPPASLTKVLTLYILFDAIRQGRLRPWDVIEVSPRAATQGGS 183 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATH 151 N + G + + + +K + V SAND +AIA++L + FV MN+T+K LG++ + Sbjct: 184 NMRLRPGEQVKVTDLIKGIAVASANDACMAIADNLENGNAEAFVALMNDTAKRLGMTNSV 243 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F N +G+ G TTARDM L+ FP+ + ++ ++ N N +G + Sbjct: 244 FFNPNGLPADGQVTTARDMLKLAAAYLEQFPKSLTIHSMQFFTHNNRQRHNANSLLGRYE 303 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGF CASG+NIVA+A++GD LIAV+LG+ + R + +A LL GF Sbjct: 304 GVDGLKTGFVCASGYNIVATAMRGDTRLIAVVLGSRNPRVRERETAKLLDKGF 356 >gi|153855284|ref|ZP_01996450.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814] gi|149752283|gb|EDM62214.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814] Length = 393 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/261 (36%), Positives = 142/261 (54%), Gaps = 13/261 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG +I E PD PAS+TK+MT ++F L + L +T S+ A+ Sbjct: 41 PSAILMEASTGQIIYEKNPDEKLPPASVTKVMTLLLIFDALDSGQIKLGDEVTTSEYAAS 100 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D +K + V SAND V +AE +C E++FV MN +K+LG+ Sbjct: 101 MGGSQVFLEPGETQTVDTLIKCISVASANDACVTMAEYICGNEEEFVTKMNKRAKDLGMK 160 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---Y 200 THF+N +G+ GH TTARD+A++S + T +PQ Y I I KG+ Sbjct: 161 NTHFVNCNGLDADGHLTTARDIALMSKELITTYPQIFDYCNIWMENIIHKTQKGESEFGL 220 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + A G+KTG T + F + A+ + D LIAVI+ A D R + + +LL Sbjct: 221 TNTNKLIRQYEYATGLKTGSTSKAKFCVSATGRKDDIDLIAVIMAADDSKARVRDAITLL 280 Query: 261 SMGF-----YNKTDRKKINYI 276 + GF Y + +KKI+ + Sbjct: 281 NYGFGKCQKYTEKKQKKISPV 301 >gi|91792211|ref|YP_561862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella denitrificans OS217] gi|91714213|gb|ABE54139.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella denitrificans OS217] Length = 428 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G VIAE NPASLTK+MT+YV+ LK L +TI+KNA Sbjct: 78 YVLMDYHSGQVIAEGNSYESLNPASLTKMMTSYVIGHELKVGNISLEDEVTITKNAWSKN 137 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T+ +D+ + +I++S ND VA+AE + TE FV MN+ SK LG+ Sbjct: 138 FPDSSKMFIEVGKTVKVDDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDLMNSWSKQLGM 197 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + ++F N+HG+ H TTA DMA+L + D PQ + K G K N N Sbjct: 198 NDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPQEYRVYAEKSFTYNGIKQYNRNGLL 257 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+VASA LI+V+LG + R S LL+ GF Sbjct: 258 W--DNSLNVDGIKTGHTSGAGYNLVASATSDGMRLISVVLGTSSESARKAESKKLLNYGF 315 >gi|119775724|ref|YP_928464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis SB2B] gi|119768224|gb|ABM00795.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella amazonensis SB2B] Length = 392 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG +IAE + NPASLTK+MT+YV+ +K +TI+KNA Sbjct: 42 YVLMDYHTGQIIAEEHAYEQLNPASLTKMMTSYVIGHEMKVGNISPEDDVTITKNAWSKN 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T+ + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 102 FPDSSKMFIEVGKTVKAADLNRGIIIQSGNDACVAMAEHIAGTEDAFVDMMNSWAKQLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + ++F N+HG+ H TTA DMAIL + D P+ + K G K N N Sbjct: 162 TDSYFENSHGLDSDNHKTTAYDMAILGAALIRDVPEEYRIYSEKEFTFNGIKQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA Q D LI+V++GA +R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVASATQDDMRLISVVMGASSEASRKAESKKLLSYGF 279 >gi|303248189|ref|ZP_07334453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] gi|302490453|gb|EFL50362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] Length = 359 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 1/233 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D NTG ++ E PD PASLTK++T Y++F +++ K + +S+ A+ S Sbjct: 98 LWDMNTGGLLYEQNPDVQIPPASLTKILTLYIIFDAIRQGKLHPWDVVEVSQRAASQGGS 157 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATH 151 N + G ++ + +K + V SAND +A+AE L FV MN+T++ LG++ + Sbjct: 158 NMRLRAGESVKVTELIKGIAVASANDACMAMAEYLENGNPDAFVNVMNDTAQRLGMTRSR 217 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 FMN +G+ G TTARDM L+ FP+ + ++ ++ N N +G + Sbjct: 218 FMNPNGLPADGQVTTARDMLRLASAYLEQFPKALTIHSMQFFTHNNRQRHNANALLGRYE 277 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTGF CASG+NI+A+A +GD LI V+LG+ R + ++ LL GF Sbjct: 278 GADGLKTGFVCASGYNIIATAKRGDTRLIGVVLGSRSAGVRLRETSKLLDKGF 330 >gi|218671981|ref|ZP_03521650.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56] Length = 277 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + PD PASLTK+MT Y+ F L E + +T+S+NA P Sbjct: 33 VVDAQSGQVLEASNPDDLNYPASLTKMMTLYLAFEALHEGRLTWEQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L +E+ F + M + + LG+ T F Sbjct: 93 KLAVGAGRRVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKTMTDKAHQLGMKDTVF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ TTARDMA L + DFP+ F ++G + +G K N + + G Sbjct: 153 KNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V SA++G + ++ V++G R+ A LL Sbjct: 213 VDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLRDDKMAGLL 260 >gi|163868095|ref|YP_001609299.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161017746|emb|CAK01304.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 449 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 129/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + + PASLTK+MT Y++F ++ ++ TPI +S A+ PP+ Sbjct: 45 VIDATTGKTLFQANATLKRYPASLTKMMTLYLLFEAMQMRRVTPNTPIPVSHYAAMRPPT 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G T++ + A K LI +SAND+A AIAE L +EK F + M ++ LG+ THF Sbjct: 105 KIGFKAGQTISAEAAAKALITRSANDVATAIAEYLGGSEKNFARMMTAKARKLGMKHTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +Y+TARD+A LS ++ FP+ F+ K +G + N V G Sbjct: 165 ANASGLPDVQNYSTARDIATLSLALRQHFPKQYKLFKTKSFNFRGHTINSHNKLVKVMKG 224 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T SG N+ S +S++AV++G R++ ASLL Sbjct: 225 VDGIKTGYTQMSGSNLATSMRLEGRSVVAVVMGGKSSTARDEHMASLL 272 >gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300076378|gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 7/243 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD + VIA + PD PASLTKLMTAY+ F+ L++K+ L +++S NA + Sbjct: 35 WLLLDASANQVIASSDPDTRVEPASLTKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVD 94 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 PS+S + +++DN L LI S ND AVA+AE++ TE FVQ MN ++ GL+ Sbjct: 95 PSSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLT 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIKGKKYPNTNWAV 207 THF N HG+ YTTARD++IL + DFP+Y Y+ +K PN N + Sbjct: 155 NTHFSNPHGLPSPDTYTTARDLSILCRNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNKVSASLLSMG 263 DGMKTG T ++G++++ SA + G++ LI+V++G + R + S LL+ G Sbjct: 215 WLDPTVDGMKTGHTSSAGYSLITSAHRPVPNGERRLISVVIGTVSDQVRTQESQKLLNWG 274 Query: 264 FYN 266 F N Sbjct: 275 FQN 277 >gi|326315218|ref|YP_004232890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372054|gb|ADX44323.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 393 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 18/247 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD +G V+A D P ASLTKLMT Y+VF L +K L + +S A + P Sbjct: 43 YLLLDVTSGQVLAAKDIDAPVEQASLTKLMTGYLVFDALSSRKITLEQKLPVSVLAWKMP 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND ++A+AE + + + FV+ MN+ +K LG+ T Sbjct: 103 GSRMFIDPKMQVPVDDLLKGMIVQSGNDASMALAEGVGGSAENFVKLMNDQAKALGMKNT 162 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K YP T + GT Sbjct: 163 AYKNPEGLTEPGHTTTARDLSILATRLMKDFPEYMHYYSTKHYA-----YPGTPPSNGTN 217 Query: 211 LGA--------DGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSA 257 + DG+KTG T A+G+ +VA++ + G + L++++LG N R S Sbjct: 218 RNSLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGTASENARANESQ 277 Query: 258 SLLSMGF 264 LL+ G+ Sbjct: 278 KLLNWGY 284 >gi|149190858|ref|ZP_01869122.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1] gi|148835318|gb|EDL52291.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1] Length = 394 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 142/245 (57%), Gaps = 5/245 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G ++ D PASLTKLMTAYVV ++ + + + +S+NA + Sbjct: 36 YVLMDYQSGAILVGGNQDAALAPASLTKLMTAYVVGKEIENGRTSWDSKVAVSENAWSVK 95 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K G +T+ + L+ LIV+S ND AVA+AE + TE FV MN + NLG+ Sbjct: 96 FPDSSKMFIKPGDNVTVADLLRGLIVQSGNDAAVALAEHVAGTESGFVALMNQWAVNLGM 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWA 206 + T F+NAHG+ G +TT DMAIL +I D P+ Y Y + + + K+Y Sbjct: 156 NNTQFINAHGLDGQGIHTTPNDMAILMRKIIEDVPEVYEIYSEKRFVWADIKQYNRNRLL 215 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-Y 265 L DG KTG+T +G+++V+SA QG LI+V++G TR + S LL+ GF + Sbjct: 216 WDNSLNVDGGKTGYTSDAGYSLVSSATQGQMRLISVVMGTPSTQTRVEASRQLLNYGFRF 275 Query: 266 NKTDR 270 +TD+ Sbjct: 276 YETDQ 280 >gi|165918943|ref|ZP_02219029.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334] gi|165917340|gb|EDR35944.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334] Length = 384 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 6/237 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 34 YVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTG 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG+ + Sbjct: 94 GSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNS 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N W Sbjct: 154 HYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRD 213 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 214 GS---ADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 267 >gi|269467932|gb|EEZ79667.1| D-alanyl-D-alanine carboxypeptidase [uncultured SUP05 cluster bacterium] Length = 379 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 6/237 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +LD N+G VIA + P PASLTKLMTAYVVF +K+ +A L + ISK A + Sbjct: 43 YIVLDYNSGKVIASHKPHDKRAPASLTKLMTAYVVFQLIKDGRASLEDDVRISKKAWKTM 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S + G T+ L LK +I++S ND AVA+AE + TE F +MN + LG++ T Sbjct: 103 GSKSFVEVGKTIKLKILLKGMIIQSGNDAAVALAEHIAGTEGTFTAYMNQYAAELGMNNT 162 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 F NA G+ +TTA DMA L+ DFP++ ++ K K N N W+ Sbjct: 163 RFENASGLDYKDQHTTASDMAKLASATIRDFPEFYPWYSEKEFTYHDIKQRNRNKLLWSD 222 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 T DG+KTGFT + +N+VASA + LI+V+LG+ +R + +L GF Sbjct: 223 NT---VDGLKTGFTEKAQYNLVASANRMGMRLISVVLGSSSGESRTAQTQKVLDYGF 276 >gi|29654563|ref|NP_820255.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii RSA 493] gi|154706869|ref|YP_001424698.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii Dugway 5J108-111] gi|161830325|ref|YP_001597113.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331] gi|29541831|gb|AAO90769.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii RSA 493] gi|154356155|gb|ABS77617.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii Dugway 5J108-111] gi|161762192|gb|ABX77834.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331] Length = 418 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 6/237 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 68 YVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTG 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG+ + Sbjct: 128 GSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNS 187 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N W Sbjct: 188 HYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRD 247 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 248 GS---ADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301 >gi|225872450|ref|YP_002753905.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium capsulatum ATCC 51196] gi|225792978|gb|ACO33068.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium capsulatum ATCC 51196] Length = 414 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 132/232 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ + D +PASLTKLMT Y+ F L++ + L + IS +A+ PS Sbjct: 48 LMDARSGKVLYAYHADERTHPASLTKLMTLYLTFQRLQDGRMRLDERLHISAHAAGQQPS 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ + + +I SAND AV +AE + TE +F + MN ++ LG++ T F Sbjct: 108 KMWLHAGGTVSVRSCILGIISHSANDAAVTLAEGMAGTEWRFTRLMNEQARRLGMTHTIF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +TTA DMA L+ + FPQY H+F + +G+ + + + G Sbjct: 168 YNASGLPDGRQWTTAYDMAKLARALIYTFPQYYHFFSVHAFRYQGRMLYSFDRLPQEYTG 227 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG+ +SGFNIV SA++ +I V+LG ++R+ +LL+ GF Sbjct: 228 VDGMKTGYINSSGFNIVTSAVRNHHRVIGVVLGGATAHSRDLQMIALLNRGF 279 >gi|218662722|ref|ZP_03518652.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771] Length = 289 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 134/248 (54%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 LS+ ++A+ +LD +G V+ + D PASLTK+MT Y+ F L + Sbjct: 13 LSSALLMCAVAQAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHDG 72 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + +T+S+NA P G +TL A++ ++V SAND AVAIAE L +E+ Sbjct: 73 RLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAIAEQLGGSEQ 132 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + M + ++ LG+ T F N G+ TTARDMA L + DFP+ F ++G Sbjct: 133 AFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRG 192 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ V++G R Sbjct: 193 FQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLR 252 Query: 253 NKVSASLL 260 + A LL Sbjct: 253 DDKMAGLL 260 >gi|308048532|ref|YP_003912098.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799] gi|307630722|gb|ADN75024.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799] Length = 387 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG V+AEN PASLTK+MT+YV+ L T + IS NA Sbjct: 38 YVLMDFKTGRVLAENNAYEQRAPASLTKMMTSYVLGQELNRGNVRETDMVKISNNAWAKN 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ + + G + L + + ++V+S ND VAIAE + TE + MN S LG+ Sbjct: 98 FPGSSVMWIEVGKEVNLMDLYRGMVVQSGNDACVAIAEHVAGTESAYTDLMNAWSGQLGM 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF NAHG+ TTA DMAIL I D PQY + +K G + N N Sbjct: 158 ADTHFANAHGLDATDQVTTAYDMAILGRAIIRDIPQYYPLYSLKEFTFNGIRQHNRNGLL 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DGMKTG T +G+N+V+SA +GD LIAV++GA +R S LL+ GF Sbjct: 218 W--DRSLNVDGMKTGHTNGAGYNLVSSATKGDMRLIAVVMGAKSPQSREAESKKLLNYGF 275 >gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] gi|151281110|gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11) [Janthinobacterium sp. Marseille] Length = 382 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 26/305 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNP 53 M++ L IA +LS LS A +P T LLD + V+A N PD P Sbjct: 1 MKKLLAAIAATVLS-----LSSAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEP 55 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--KKGSTMTLDNALKLL 111 ASLTKLMTAYV F+ +++KK L ITIS NA + PS+S + + +++ L L Sbjct: 56 ASLTKLMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGL 115 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND AVAIAE++ TE FV MN ++ +G+ +THF N HG+ +Y+TARD++ Sbjct: 116 IVQSGNDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLS 175 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +L+ + D P++ + K K PN N + DGMKTG+T +G+ ++++ Sbjct: 176 VLASHLINDHPEFYKIYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLIST 235 Query: 232 AIQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 A + G++ LI+V+LG + R + S LL+ GF +N+ Y +N Sbjct: 236 AKRPNGTGERRLISVVLGTISDQARAQESQKLLNWGF--------LNFDTVKLYAKNEPI 287 Query: 288 EVPNI 292 PN+ Sbjct: 288 ATPNV 292 >gi|225570661|ref|ZP_03779684.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM 15053] gi|225160488|gb|EEG73107.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM 15053] Length = 423 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 14/260 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D PAS+TK+MT ++F LK+ K L ++ S+ A+ Sbjct: 71 PSAVLMEASTGQVIYEKDADEQRPPASVTKIMTLLLIFDALKDGKIKLDDSVSTSEFAAS 130 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D +K + V SAND VA+AE +C E++FV++MN +K LG++ Sbjct: 131 MGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKNMNERAKGLGMT 190 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 THF+N +G+ GH TTARD+A++S + T +PQ Y I KG G Sbjct: 191 NTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIRDYSMIWMENITHTTNKGTTEFG- 249 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN V + A G+KTG T + + + A+A + LIAVI+ A D R + + Sbjct: 250 -LTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAEKNGMELIAVIMAAPDHKARFSDATT 308 Query: 259 LLSMGF--YNKTDRKKINYI 276 LL+ GF NK + KI I Sbjct: 309 LLNYGFGKCNKYEEDKIASI 328 >gi|212212357|ref|YP_002303293.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuG_Q212] gi|212010767|gb|ACJ18148.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuG_Q212] Length = 418 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 6/237 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 68 YVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSIKAWRTG 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG+ + Sbjct: 128 GSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNS 187 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N W Sbjct: 188 HYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRD 247 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 248 GS---ADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301 >gi|159185157|ref|NP_355279.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium tumefaciens str. C58] gi|159140428|gb|AAK88064.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium tumefaciens str. C58] Length = 431 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+A D +PASLTK+MT Y+ F L + IT+SKN + PS Sbjct: 39 IMDANTGKVLAARNADVLNHPASLTKMMTLYMTFEALHAGRLRWDQKITMSKNGASVIPS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G T T+ A+ +IVKSAND+A + + L +E +F + M ++ LG+S T F Sbjct: 99 KLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDHLGGSEARFAEMMTRKARQLGMSKTVF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA L ++ DFP+ F ++ +GK+ N + + G Sbjct: 159 RNASGLPSKSQVTTARDMARLGLALQRDFPKEYGLFAMESFSFRGKRIRGHNNLMYRYQG 218 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASGFN+V++ + ++ V+LG +R+ A+LL Sbjct: 219 MDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKTARSRDAQMAALL 266 >gi|269961828|ref|ZP_06176185.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] gi|269833406|gb|EEZ87508.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] Length = 389 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV +K L + IS+NA Sbjct: 40 YVLMDYHTGTVLVERDADKRLNPASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G++++L + + LIV+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 100 FPDSSKMFIEVGTSVSLSDLYRGLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S + F N HG+ G Y+T RD+A L I D P + G N N + Sbjct: 160 SNSAFTNPHGLDSDGLYSTPRDIATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD L+AV++GA + R S LLS GF Sbjct: 220 RDRSMSVDGMKTGYTSGAGYSLATSATNGDMRLVAVVMGAKSPSVRESESKQLLSYGF 277 >gi|153833629|ref|ZP_01986296.1| penicillin-binding protein 5 [Vibrio harveyi HY01] gi|156977638|ref|YP_001448544.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|148870027|gb|EDL68982.1| penicillin-binding protein 5 [Vibrio harveyi HY01] gi|156529232|gb|ABU74317.1| hypothetical protein VIBHAR_06426 [Vibrio harveyi ATCC BAA-1116] Length = 389 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV +K L + IS+NA Sbjct: 40 YVLMDYHTGTVLVERDADKRLNPASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G++++L + + LIV+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 100 FPDSSKMFIEVGTSVSLSDLYRGLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S + F N HG+ G Y+T RD+A L I D P + G N N + Sbjct: 160 SNSAFTNPHGLDSDGLYSTPRDIATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD L+AV++GA + R S LLS GF Sbjct: 220 RDRSMSVDGMKTGYTSGAGYSLATSATNGDMRLVAVVMGAKSPSVRESESKQLLSYGF 277 >gi|51595692|ref|YP_069883.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 32953] gi|108812820|ref|YP_648587.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|145599648|ref|YP_001163724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F] gi|162419917|ref|YP_001606057.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165936271|ref|ZP_02224840.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|167468020|ref|ZP_02332724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1] gi|170024965|ref|YP_001721470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|229841277|ref|ZP_04461436.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843380|ref|ZP_04463526.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229895754|ref|ZP_04510924.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A] gi|229903242|ref|ZP_04518355.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|51588974|emb|CAH20591.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 32953] gi|108776468|gb|ABG18987.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Nepal516] gi|145211344|gb|ABP40751.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F] gi|162352732|gb|ABX86680.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165915885|gb|EDR34493.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|169751499|gb|ACA69017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|229679012|gb|EEO75115.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|229689727|gb|EEO81788.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697643|gb|EEO87690.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700677|gb|EEO88706.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A] Length = 401 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 101 TGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 161 KALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DGMKTG+T +G+N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLW--NSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|253990345|ref|YP_003041701.1| penicillin-binding protein 6 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781795|emb|CAQ84958.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase) [Photorhabdus asymbiotica] Length = 400 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G ++A N PD +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 42 YVLMDYDSGKILASNNPDERLDPASLTKIMTSYVIGQAIKAGKITPEDVVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MNN Sbjct: 100 TGNPVLKGSSLMFLKPGDQVKVIDLNRGIVIQSGNDASIALADYVAGSQDTFVSLMNNYV 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL+ THF HG+ G ++TARDMA+LS + D P + K + PN Sbjct: 160 KSLGLTNTHFQTVHGLDAEGQFSTARDMAVLSQAMIRDVPDEYVLHKEKAFTFNKIQQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG+T +G+N+VASA +G LI+V+LGA R S L Sbjct: 220 RNRLLW--NKSINVDGVKTGYTSGAGYNLVASATEGPMRLISVVLGAPSDRVRFAESEKL 277 Query: 260 LSMGF 264 LS GF Sbjct: 278 LSWGF 282 >gi|165924684|ref|ZP_02220516.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166009807|ref|ZP_02230705.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211384|ref|ZP_02237419.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|167419833|ref|ZP_02311586.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424129|ref|ZP_02315882.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270487038|ref|ZP_06204112.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294503318|ref|YP_003567380.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003] gi|165923744|gb|EDR40876.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991203|gb|EDR43504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|166207155|gb|EDR51635.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|166962574|gb|EDR58595.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056978|gb|EDR66741.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361357|gb|ACY58078.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D106004] gi|262365105|gb|ACY61662.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D182038] gi|270335542|gb|EFA46319.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294353777|gb|ADE64118.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003] Length = 400 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 42 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 100 TGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 160 KALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DGMKTG+T +G+N+VASA G LI+V+LGA R S L Sbjct: 220 RNRLLW--NSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|218461037|ref|ZP_03501128.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli Kim 5] Length = 294 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 138/255 (54%), Gaps = 8/255 (3%) Query: 12 MLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +L++ PF + AE + + +LD +G V+ + D PASLTK+MT Y+ Sbjct: 13 LLASALPFALLVGAFIPAEAGQASF--VLDVQSGQVLEASNQDDLNYPASLTKMMTLYLA 70 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L + + +T+S+NA P G +TL A++ ++V SAND AVAIAE Sbjct: 71 FEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAIAE 130 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + DFP+ Sbjct: 131 QLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEF 190 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ V++G Sbjct: 191 KLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMG 250 Query: 246 ALDRNTRNKVSASLL 260 R+ A LL Sbjct: 251 EKTAGLRDDKMAGLL 265 >gi|22126741|ref|NP_670164.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Yersinia pestis KIM 10] gi|45441099|ref|NP_992638.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Microtus str. 91001] gi|149366701|ref|ZP_01888735.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125] gi|218928470|ref|YP_002346345.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92] gi|21959762|gb|AAM86415.1|AE013888_11 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Yersinia pestis KIM 10] gi|45435958|gb|AAS61515.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Microtus str. 91001] gi|115347081|emb|CAL19973.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92] gi|149291075|gb|EDM41150.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125] Length = 432 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 74 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 132 TGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 192 KALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTN 251 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DGMKTG+T +G+N+VASA G LI+V+LGA R S L Sbjct: 252 RNRLLW--NSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKL 309 Query: 260 LSMGF 264 L+ GF Sbjct: 310 LTWGF 314 >gi|238794862|ref|ZP_04638462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] gi|238725805|gb|EEQ17359.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] Length = 401 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 163 LGLSNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W T L DGMKTGFT +G N+VASA +G LI+V+LGA R S LLS Sbjct: 223 RLLW--NTNLNVDGMKTGFTSGAGHNLVASATEGPMRLISVVLGAPSDRVRFSESEKLLS 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|186894765|ref|YP_001871877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] gi|186697791|gb|ACC88420.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] Length = 401 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + + + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 163 LGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTNRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W + L DGMKTG+T +G+N+VASA G LI+V+LGA R S LL+ Sbjct: 223 RLLW--NSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|163760085|ref|ZP_02167168.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Hoeflea phototrophica DFL-43] gi|162282484|gb|EDQ32772.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Hoeflea phototrophica DFL-43] Length = 289 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 1/242 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S+A T ++D +G ++ + PASLTK+MT Y++F + + + TPI Sbjct: 41 SVAPTTAKYAAIVVDEKSGKMLYGANVNELRYPASLTKMMTVYMLFEAMDQGRISRDTPI 100 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMN 139 IS+NA+ PPS K G ++ +D A+++L+VKSAND+A A+ E L +E +F M Sbjct: 101 PISRNAARRPPSKLGLKAGQSIPVDTAIRVLVVKSANDVATAVGEFLGGGSEARFADMMT 160 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG+S T F NA G+ +TA DMA LS ++ +FP + YF + + G+ Sbjct: 161 AKARTLGMSRTTFKNASGLPDPDQVSTATDMARLSIALRRNFPHHYSYFGQTEVTVAGRT 220 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N A+ GADG+KTG+T ASGFN+ S +S++ V++G + R+ L Sbjct: 221 IKGHNKAMKMIPGADGLKTGYTRASGFNLATSVRHQGKSVVGVVMGEDKASIRDARMTQL 280 Query: 260 LS 261 +S Sbjct: 281 MS 282 >gi|153947077|ref|YP_001401624.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] gi|152958572|gb|ABS46033.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] Length = 400 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 42 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + + + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 102 NPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 162 LGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W + L DGMKTG+T +G+N+VASA G LI+V+LGA R S LL+ Sbjct: 222 RLLW--NSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|299530593|ref|ZP_07044011.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni S44] gi|298721416|gb|EFI62355.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni S44] Length = 390 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 18/247 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L + +S+ A + P Sbjct: 39 YLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQRMPVSERAWKMP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ L +I++S ND +A+AE++ T + FV+ MN+ +K LG+ T Sbjct: 99 GSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K YP T + G+ Sbjct: 159 SYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYATKQYS-----YPGTPASNGSN 213 Query: 211 LGA--------DGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSA 257 A DG+KTG T A+G+ +VA+A + G + L++++LG R S Sbjct: 214 RNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEKARANESQ 273 Query: 258 SLLSMGF 264 LL+ G+ Sbjct: 274 KLLNWGY 280 >gi|237798412|ref|ZP_04586873.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021264|gb|EGI01321.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 386 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 137/254 (53%), Gaps = 8/254 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGFR----- 274 Query: 271 KKINYIIKDFYQQN 284 Y ++FYQ+ Sbjct: 275 ---FYETQNFYQKG 285 >gi|221069456|ref|ZP_03545561.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni KF-1] gi|220714479|gb|EED69847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni KF-1] Length = 390 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 18/247 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L + +S+ A + P Sbjct: 39 YLLVDVTAGQVLGAKDIDAPVEQASLTKLMSAYVVFDALRAKKITLEQRMPVSERAWKMP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ L +I++S ND +A+AE++ T + FV+ MN+ +K LG+ T Sbjct: 99 GSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K YP T + G+ Sbjct: 159 SYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYSTKQYS-----YPGTPASNGSN 213 Query: 211 LGA--------DGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSA 257 A DG+KTG T A+G+ +VA+A + G + L++++LG R S Sbjct: 214 RNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEKARANESQ 273 Query: 258 SLLSMGF 264 LL+ G+ Sbjct: 274 KLLNWGY 280 >gi|239906564|ref|YP_002953305.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] gi|239796430|dbj|BAH75419.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] Length = 364 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 1/228 (0%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 +G + D P PASLTK+MT YVVF + KA I +S+ A S Sbjct: 45 GSGKTLYSQDADRPIPPASLTKVMTMYVVFDLVASGKASFADRIKVSRGADRTGGSTMGL 104 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 + G +TLD ++ + V S ND +A+AE FV MN ++ LG++ T F N + Sbjct: 105 RAGEIVTLDELMRGMAVASGNDACIAVAEHFGGVPT-FVGLMNRKARELGMTGTTFKNPN 163 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM 216 G+ G YTTARD+ L+ +PQ + Y + G + NTN + ++ GADG+ Sbjct: 164 GLPAAGQYTTARDLTKLAVSYLRHYPQALRYHSTTEINHNGAVHGNTNRLLASYDGADGI 223 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 KTG+ ASG+NI+A+A +GD +IAV+LG + RN+ + +L F Sbjct: 224 KTGYVDASGYNIIATAKRGDTRVIAVVLGGRTKQVRNREAVRILDASF 271 >gi|241766088|ref|ZP_04764001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii 2AN] gi|241363892|gb|EER59198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii 2AN] Length = 406 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 133/242 (54%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++A D P ASLTKLMT Y+VF L+ KK L + +S A + P Sbjct: 56 YMLVDVTANQILAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQKLPVSVRAWKMP 115 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND +A+AE + T + FV+ MN+ ++ LG+ T Sbjct: 116 GSRMFIDPKMQVAVDDLLKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQAQALGMKNT 175 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAV 207 + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K G N N + Sbjct: 176 AYKNPEGLTEPGHTTTARDLATLASRLMKDFPEYMHYYSTKQYSYPGTPASNGNNRNMLL 235 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ +VA++ + G + L++++LGA N R S LL+ Sbjct: 236 FRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASENARANESQKLLNW 295 Query: 263 GF 264 G+ Sbjct: 296 GY 297 >gi|238757942|ref|ZP_04619124.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] gi|238703927|gb|EEP96462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] Length = 397 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++AE D +PASLTK+M++YV+ LK K +T+ K+A + Sbjct: 43 YVLMDYNSGKILAEGNSDQRLDPASLTKIMSSYVIGQALKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVRLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ THFM HG+ G Y+TARDMA+L + D P + K + N N Sbjct: 163 LGLANTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T L DGMKTGFT +G N+VASA G LI+V+LGA R S LL+ Sbjct: 223 RLLWS--TNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRIRFNESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|58039077|ref|YP_191041.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] gi|58001491|gb|AAW60385.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] Length = 348 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 1/236 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++ + PASLTKLMT Y+ F L+ + L + +S +AS PS Sbjct: 34 VMDARTGAVLSATDAELQRYPASLTKLMTLYLTFRALEAHQITLDEQVPVSIHASVQAPS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-EKKFVQHMNNTSKNLGLSATH 151 G+ +T++ + L+ KSAND A A+ E L E +F Q M ++ LG++ T Sbjct: 94 KLGLVPGTRLTVEQGILGLVTKSANDAACALGEFLGGGDEVRFAQLMTQQARALGMTNTT 153 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ TTA D+A+LS + +DFPQY HYF + + PN + + + Sbjct: 154 FRNASGLPDPDQVTTAHDLALLSQHLISDFPQYYHYFNVPSFYFHRRMVPNHDPMLKIYA 213 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 GADG+KTG+T +G N++ SA +G+ LI V++GA + R+ SLL GF ++ Sbjct: 214 GADGLKTGYTDLAGHNLITSAQRGNVRLIGVVMGAPNNTRRSMEMVSLLDKGFADE 269 >gi|221134237|ref|ZP_03560542.1| D-alanyl-D-alanine carboxypeptidase [Glaciecola sp. HTCC2999] Length = 385 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y LLD NTG VIAE D PASLTK+MT YV+ L+ LT + IS+NA Sbjct: 34 YILLDANTGDVIAEQNADMQLAPASLTKIMTMYVIGQELQAGNIALTDEVIISENAWAKN 93 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ +++ + + ++V+S ND VA+AE + +E+ F MN + LG+ Sbjct: 94 FPDSSKMFIEVGTRVSVSDLMHGIVVQSGNDACVAMAEHIAGSEEAFASMMNAHAAKLGM 153 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +AT+F+NAHG+ H+T+ RDMA+LS + D P+ + K + N N Sbjct: 154 TATNFVNAHGLHDSQHFTSPRDMAVLSRALIKDNPEEYELYSKKEFTYNNIRQYNRNSLL 213 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G++++ SA QGD L++V++G R + LL GF Sbjct: 214 W--DKALSVDGIKTGHTSDAGYSLITSATQGDMRLVSVVMGTDSERARKVENKKLLRYGF 271 >gi|164685962|ref|ZP_01946170.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat Q177'] gi|212218675|ref|YP_002305462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuK_Q154] gi|164601484|gb|EAX33225.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat Q177'] gi|212012937|gb|ACJ20317.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuK_Q154] Length = 418 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 6/237 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 68 YVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTG 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG+ + Sbjct: 128 GSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNS 187 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 H++++ G+ + HY+T DMA L+ I DFP+Y HYF K L K PN N W Sbjct: 188 HYVDSTGLPRPDHYSTPYDMAALTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRD 247 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 248 GS---ADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301 >gi|77461187|ref|YP_350694.1| penicillin-binding protein 6 [Pseudomonas fluorescens Pf0-1] gi|77385190|gb|ABA76703.1| putative cell division-related protein [Pseudomonas fluorescens Pf0-1] Length = 385 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 YVLMDANSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T +LG++ T Sbjct: 99 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVAEHIAGSEDAFADLMNKTVADLGMTNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 159 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 219 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEVARAAETQKLLTYGF 272 >gi|88810567|ref|ZP_01125824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis Nb-231] gi|88792197|gb|EAR23307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis Nb-231] Length = 340 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 130/231 (56%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D ++ V+ E D +PASLTK+MTAYVVFS LK K + +T+S+ A P S Sbjct: 1 MDHDSNQVLVEVNVDKRHDPASLTKMMTAYVVFSELKSKHIAIDDQVTVSEKAWREPGSR 60 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G + + L+ +IV+S ND +VA+AE + E F Q MN ++ LG+ TH++ Sbjct: 61 MFIEVGDKVPVKALLQGMIVQSGNDASVALAEHVAGNESTFAQVMNQYARTLGMEHTHYV 120 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 NA G+ HYTTA D A+LS + DFPQY F K G + N N + Sbjct: 121 NATGLPDPKHYTTAHDTALLSQALMRDFPQYHSMFAEKKYTYNGIEQYNRNKLLWRDPSV 180 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A+G+ + +SA + + LI+V++GA R + +LL+ GF Sbjct: 181 DGLKTGHTEAAGYCLASSAERDNMRLISVVMGAGSEEARLSDTQALLNYGF 231 >gi|320015830|gb|ADV99401.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 401 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 101 TGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 161 KALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DGMKTG+T G+N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLW--NSSLNVDGMKTGYTNGVGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|86357959|ref|YP_469851.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86282061|gb|ABC91124.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 354 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 128/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + D PASLTK+MT Y+ F L E + +T+S+NA P Sbjct: 96 VVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHEGRLTWDQKLTMSENAESKEPF 155 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ +IV SAND AVAIAE L +E+ F + M + + LG+ T F Sbjct: 156 KLAIGAGRQVTLREAVESIIVLSANDSAVAIAEQLGGSEQTFARTMTDKAHQLGMKDTVF 215 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ TTARDMA L + DFP+ F ++G + +G K+ N + + G Sbjct: 216 KNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFKFRGMKFRGHNNLMYRYDG 275 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V SA++ + L+ V++G + R+ ASLL Sbjct: 276 VDGIKTGYTDASGYNVVTSALKDGRRLVGVVMGEKTASLRDDRMASLL 323 >gi|82703112|ref|YP_412678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosospira multiformis ATCC 25196] gi|82411177|gb|ABB75286.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosospira multiformis ATCC 25196] Length = 404 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 129/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G V+ +PASLTKLMTAYVVF+ L +K+ LT + +S A Sbjct: 62 YILADLQSGQVLVSKNAHERVDPASLTKLMTAYVVFAALYQKRVTLTQAVPVSTRAWRAQ 121 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D ++ +IV+S ND ++A+AE++ +E+ F Q MN + +G+ T Sbjct: 122 GSRMFIEPKKPVTVDELMRGMIVQSGNDASIALAEAVSGSEEAFAQAMNKEAARMGMKNT 181 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F N+ G+ HYTTA D+A+L+ I DFP+Y + +K N N + Sbjct: 182 RFANSTGLPDPDHYTTAYDLALLATAIIRDFPEYYPLYSLKEYTYNKITQANRNRLLWLD 241 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T A+G+ ++ SA +G + L+AV++G + R S LL+ GF Sbjct: 242 PNVDGMKTGHTDAAGYCLITSARRGQRRLVAVVMGTASESARAMESQRLLNYGF 295 >gi|329905874|ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gi|327547445|gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 403 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 159/279 (56%), Gaps = 13/279 (4%) Query: 1 MRQFLVIIAMAM--LSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNP 53 M+ F+ +A + LS++F + A+T P + LLDT +G V+A P P Sbjct: 18 MKIFIAALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEP 77 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--KKGSTMTLDNALKLL 111 ASLTK+MTAYV F +KEK+ L + +S A + PS+S + +++D+ L L Sbjct: 78 ASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGL 137 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V+S ND AVA+AE++ TE+ FV MN +K +GL+ T F N HG+ +Y+TA+D++ Sbjct: 138 MVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLS 197 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 L+ + TD+P++ +K PN N + DGMKTG T A+G+ I+AS Sbjct: 198 KLAAAVITDYPEFYKIDSVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIAS 257 Query: 232 AIQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 A + G++ LI+V+LGA +R + S LL+ GF N Sbjct: 258 AKRPNGSGERRLISVVLGANSDQSRTQESQKLLNWGFQN 296 >gi|239832060|ref|ZP_04680389.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824327|gb|EEQ95895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 469 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 128/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + D PASLTK+MT Y++F ++ + T I +S A+ PP+ Sbjct: 48 VIDANTGKTLFASNADAQRYPASLTKMMTLYMLFEAMQAGRMSKDTRIPVSAYAAARPPT 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 108 KIGFRPGQSIRAEDAALAMITKSANDVATAVGEYLGGSEERFAQMMTAKARRLGMRNTTF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +TTARDMAILS ++ FP YF + +G+ N +G G Sbjct: 168 RNASGLPNMAQHTTARDMAILSIALRQHFPNEFSYFSRRSFVFRGQTINGHNRLLGRVEG 227 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+ +S + L+AV++G +R+ A L+ Sbjct: 228 VDGIKTGYTNASGYNLASSVSLDGRRLVAVVMGGNTGASRDAHMAQLI 275 >gi|66047588|ref|YP_237429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv. syringae B728a] gi|63258295|gb|AAY39391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv. syringae B728a] Length = 395 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 49 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 108 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 109 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 168 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 169 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 228 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 229 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 282 >gi|71736558|ref|YP_276518.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557111|gb|AAZ36322.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 395 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 49 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 108 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 109 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 168 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 169 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 228 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 229 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 282 >gi|91205746|ref|YP_538101.1| penicillin-binding protein dacF precursor [Rickettsia bellii RML369-C] gi|157827127|ref|YP_001496191.1| penicillin-binding protein dacF precursor [Rickettsia bellii OSU 85-389] gi|91069290|gb|ABE05012.1| Penicillin-binding protein dacF precursor [Rickettsia bellii RML369-C] gi|157802431|gb|ABV79154.1| Penicillin-binding protein dacF precursor [Rickettsia bellii OSU 85-389] Length = 307 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 130/241 (53%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + PASLTKLMT YV+F ++ K L + +S A++ PP Sbjct: 42 VIDAKTGKVLHAHNSQIRIYPASLTKLMTLYVMFELIELGKLSLDKKLLVSAKAAKMPPC 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T A+ +LIVKSAND AV +AE++ +EK F MN +K LG+ T+F Sbjct: 102 KIGLRAGDTITTREAINMLIVKSANDAAVTVAENIRLSEKDFAHLMNIKAKQLGMKNTYF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G TTARDMA L+ IK FP+Y F +G N + G Sbjct: 162 KNASGWHDPLQQTTARDMAKLTLAIKQKFPKYYPLFSKTSFVFRGNVINGHNKITKNYAG 221 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 A+GMKTGF +G+N+V +A + +SLIAV+ G +R++ LL F + + K Sbjct: 222 AEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGRSAGSRDQKMIGLLDQHFNVASAKPK 281 Query: 273 I 273 + Sbjct: 282 V 282 >gi|270262090|ref|ZP_06190362.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13] gi|270043966|gb|EFA17058.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13] Length = 389 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 130/247 (52%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG V+AEN D NPASLTKLMT V+ L + K L +T+ K+A + Sbjct: 40 YVLMDYTTGQVLAENNADERRNPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDA--WA 97 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M T+ + + +I+ S ND VA+A+ + ++ FV+ MN S Sbjct: 98 QGNPVFKGSSLMFLKPGDRVTVRDLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKS 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +TTA D+A++S I P H + K L G N Sbjct: 158 TQLGLQNTHFETVHGLDAPGQFTTAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQN 217 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T ++GFNI+ASA +GD+ LIAV++G R + L Sbjct: 218 RNGLLW--DKNLRVDGLKTGHTASAGFNIIASATEGDRRLIAVVMGGKSAKGREDQARKL 275 Query: 260 LSMGFYN 266 L+ G + Sbjct: 276 LTWGLRD 282 >gi|330938277|gb|EGH41938.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. pisi str. 1704B] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|331011314|gb|EGH91370.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|257482223|ref|ZP_05636264.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625781|ref|ZP_06458735.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648433|ref|ZP_06479776.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488990|ref|ZP_07007013.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185158|ref|ZP_07261831.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. syringae 642] gi|298156488|gb|EFH97585.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322699|gb|EFW78792.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. B076] gi|320330516|gb|EFW86495.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. race 4] gi|330867177|gb|EGH01886.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871065|gb|EGH05774.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330873695|gb|EGH07844.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. race 4] gi|330987605|gb|EGH85708.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|330953021|gb|EGH53281.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae Cit 7] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|289675748|ref|ZP_06496638.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. syringae FF5] gi|330895583|gb|EGH27891.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976833|gb|EGH76865.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|330959962|gb|EGH60222.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|260597233|ref|YP_003209804.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter turicensis z3032] gi|260216410|emb|CBA29490.1| D-alanyl-D-alanine carboxypeptidase dacC [Cronobacter turicensis z3032] Length = 403 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 140/256 (54%), Gaps = 11/256 (4%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P +A + L+D ++G V+AE D +PASLTKLMT+YVV LK K L Sbjct: 32 PIAPVAPDVDARAWILMDYHSGKVLAEGNADEKLDPASLTKLMTSYVVGQALKAGKIHLD 91 Query: 78 TPITISKNA--SEYPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 +T+ K+A + P + K G +++ + K +I++S ND ++AIA+ + ++ Sbjct: 92 DKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLNKGVIIQSGNDASIAIADYVAGSQ 151 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 FV MN +K LGL++T F HG+ G ++TARDMA+L + D P + K Sbjct: 152 DAFVGLMNGYAKRLGLTSTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEK 211 Query: 192 GLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + PN N W+ + + DGMKTG T +G+N+VASA QGD LI+V+LGA Sbjct: 212 EFTFNKIRQPNRNRLLWS--SSMNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKT 269 Query: 249 RNTRNKVSASLLSMGF 264 R + S LL+ GF Sbjct: 270 DGIRFRESEKLLTWGF 285 >gi|190892030|ref|YP_001978572.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|218516887|ref|ZP_03513727.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3] gi|190697309|gb|ACE91394.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 290 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + D PASLTK+MT Y+ F L + + +T+S+NA P Sbjct: 33 VVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHQGRLTWEQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L +E+ F + M + ++ LG+ T F Sbjct: 93 KLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKAMTDKARQLGMKDTVF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ TTARDMA L + DFP+ F ++G + +G K N + + G Sbjct: 153 KNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V SA++G + ++ V++G R+ A LL Sbjct: 213 VDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLRDDKMAGLL 260 >gi|330969439|gb|EGH69505.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|190890661|ref|YP_001977203.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190695940|gb|ACE90025.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 432 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 143/260 (55%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRKLLAAVLTVTLAVSAPLAALAGSASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 57 TLYLTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE+L +E F + M ++ LG+S T F+NA G+ TTARDM+ L + + Sbjct: 117 AAMAETLGGSESGFARMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLL 260 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDAKMAGLL 256 >gi|28871936|ref|NP_794555.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] gi|213968044|ref|ZP_03396190.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato T1] gi|301383639|ref|ZP_07232057.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato Max13] gi|302063161|ref|ZP_07254702.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato K40] gi|302131282|ref|ZP_07257272.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855189|gb|AAO58250.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] gi|213927387|gb|EEB60936.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato T1] gi|330873583|gb|EGH07732.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963469|gb|EGH63729.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014742|gb|EGH94798.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 386 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|104783763|ref|YP_610261.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Pseudomonas entomophila L48] gi|95112750|emb|CAK17478.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Pseudomonas entomophila L48] Length = 386 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 132/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA++E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMNKTAGDLGMANS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA+L+ I + P + + K K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMALLARAIINEDPAHYAIYSQKEFYWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 273 >gi|15604254|ref|NP_220770.1| penicillin-binding protein DACF precursor (dacF) [Rickettsia prowazekii str. Madrid E] gi|3860946|emb|CAA14846.1| PENICILLIN-BINDING PROTEIN DACF PRECURSOR (dacF) [Rickettsia prowazekii] gi|292572000|gb|ADE29915.1| Penicillin-binding protein dacF precursor [Rickettsia prowazekii Rp22] Length = 306 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 96/262 (36%), Positives = 139/262 (53%), Gaps = 9/262 (3%) Query: 16 IFPFLSIAE-------TNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 IF F I+E TNK P T ++D G V+ + PASLTKLMT Y++F Sbjct: 14 IFCFAPISEAKKIVKNTNKHPIQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTLYLIF 73 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ +K L + +S AS+ P + G +T+ A+ LI+KSAND+AV +AE Sbjct: 74 EAIESRKLSLDKKLLVSAKASKMPHCKLGLRAGDHITVREAINGLIIKSANDVAVTVAEG 133 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + +EK F MN +K LG+ T F NA G+ TTARD+A L+ +K D+P+Y Sbjct: 134 MKGSEKAFAHLMNVRAKTLGMKNTFFKNASGLHDPFQQTTARDIAKLAIALKRDYPKYYP 193 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 F +G N + GA+GMKTGF +G+N+V +A + ++SLIAVI G Sbjct: 194 LFSKTHFVFRGNVVNGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRNNKSLIAVITGG 253 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 +R++ LL F KT Sbjct: 254 KSAASRDQKMMRLLDHHFGVKT 275 >gi|330887942|gb|EGH20603.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. mori str. 301020] Length = 401 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+TIS+NA Sbjct: 40 YVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VAI+E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMAIL+ I + P + + K G K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|306844035|ref|ZP_07476630.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] gi|306275790|gb|EFM57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] Length = 472 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRKTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF E +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|157803860|ref|YP_001492409.1| penicillin-binding protein DacF precursor [Rickettsia canadensis str. McKiel] gi|157785123|gb|ABV73624.1| Penicillin-binding protein DacF precursor [Rickettsia canadensis str. McKiel] Length = 306 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 22 IAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + T K P T ++D +G V+ + P PASLTKLMT Y++F ++ K L Sbjct: 27 VQNTLKPPVQTSLVIDAKSGKVLQSHNSQIPIYPASLTKLMTLYLMFESIEAGKLSLDKK 86 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE++ +EK F MN Sbjct: 87 LFVSAKASQMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAENMKGSEKAFAHLMN 146 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LG+ T+F NA G TTARD+A L+ +K D+P+Y F +G Sbjct: 147 VKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKYYPLFSKTSFVFRGNI 206 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G+ +R++ L Sbjct: 207 INGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGSRSAVSRDQKMIGL 266 Query: 260 LSMGF 264 L F Sbjct: 267 LDHYF 271 >gi|157825663|ref|YP_001493383.1| penicillin-binding protein dacF precursor [Rickettsia akari str. Hartford] gi|157799621|gb|ABV74875.1| penicillin-binding protein dacF precursor [Rickettsia akari str. Hartford] Length = 306 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F +++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRVYPASLTKLMTLYLMFEAIEDGKLSLDQ 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S+ AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSQKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P+Y F +G Sbjct: 146 NIKAKQLGMKNTYFKNASGWHDPLQLTTARDMAKLTMALKKDYPKYYPLFSKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 IVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMW 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|53802656|ref|YP_112644.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] gi|53756417|gb|AAU90708.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] Length = 392 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G V+AE D PASLTK+MTAY++F L + L +T+S+ A Sbjct: 46 YLLQDFYSGRVLAERNADERLEPASLTKVMTAYILFRELAQGHVKLEDMVTVSEKAWRTE 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ ++++N LK +IV+S ND +VA+AE + E F Q MN ++ LG++ T Sbjct: 106 GSRMFAQVGAQISVENLLKGMIVQSGNDASVALAEHVAGDEAVFAQLMNQNAERLGMTNT 165 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G+ HYTTARD+A L+ + +FPQY + IK K N N + Sbjct: 166 HFKNSMGLPDPDHYTTARDLATLTRAMIKEFPQYYPWHAIKEFVFNDIKQVNRNRLLWRD 225 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ ++ SA++ +++V+LG R + +LL+ GF Sbjct: 226 PSVDGVKTGHTEGAGYCLITSAVRDGDRMVSVVLGTKSDTDRANANQALLNYGF 279 >gi|283851675|ref|ZP_06368954.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] gi|283573005|gb|EFC20986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] Length = 362 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 1/240 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + +TG ++ E PD PASLTK++T Y++F +++ K + +S+ A+ S Sbjct: 102 LWNASTGELLYEQNPDFQIPPASLTKILTLYIIFDAIRQGKLRPWDVVDVSERAATQGGS 161 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATH 151 + G ++ + + +K + V SAND +A+A+ L FV MN+T+K LG+S + Sbjct: 162 TMRLRNGESVKVTDMIKGIAVASANDACMAMADYLEGGNVDAFVALMNDTAKRLGMSNSV 221 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 FMN +G+ G TTARDM L+ FP+ + ++ ++ N N + ++ Sbjct: 222 FMNPNGLPAEGQLTTARDMLRLASAYLEQFPKALSIHSLQFFSHNNRQRHNANSLLASYE 281 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTGF CASG+NIVA+A +GD LIAV+LG+ R + +A LL GF RK Sbjct: 282 GCDGLKTGFVCASGYNIVATAKRGDTRLIAVVLGSRSPRVRQRETAKLLDKGFKLAAIRK 341 >gi|218663522|ref|ZP_03519452.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli IE4771] Length = 430 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 5/232 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+VF L++ + L TP+ S +A+ P+ Sbjct: 26 VVDAKTGNVLYSENADRLQYPASLTKMMTLYMVFEALEQGRIRLDTPVPFSAHAAAQAPT 85 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T++ + L+ SAND + A+ E L +E +F Q M + LG++ T + Sbjct: 86 KLGVRAGGTITVEQGILGLVTLSANDASTALGELLAGSEDRFAQLMTAKAHALGMTRTTY 145 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ G Sbjct: 146 RNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRG 205 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASL 259 DG+KTG+T A+GFN+V+S +S+++V+LG A D RN ++ L Sbjct: 206 VDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGTSGAARDAQMRNLIATYL 257 >gi|15892459|ref|NP_360173.1| penicillin-binding protein dacF precursor [Rickettsia conorii str. Malish 7] gi|15619614|gb|AAL03074.1| penicillin-binding protein dacF precursor [Rickettsia conorii str. Malish 7] Length = 306 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND+AV +AE + +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDVAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHNPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|190891891|ref|YP_001978433.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 652] gi|190697170|gb|ACE91255.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 524 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 7/264 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLM 60 + L I++MA+ + ++ P Y ++D TG+V+ D PASLTK+M Sbjct: 26 KLLAILSMAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 146 TALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 205 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S++ Sbjct: 206 FPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIV 265 Query: 241 AVILG-----ALDRNTRNKVSASL 259 +V+LG A D RN ++ L Sbjct: 266 SVVLGGTSGPARDAQMRNLIATYL 289 >gi|67459001|ref|YP_246625.1| penicillin-binding protein DacF precursor [Rickettsia felis URRWXCal2] gi|67004534|gb|AAY61460.1| Penicillin-binding protein DacF precursor [Rickettsia felis URRWXCal2] Length = 306 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T+K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTSKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P+Y F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKYYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N++ +A + +SLIAV+ G +R++ Sbjct: 206 IVNGHNRVTKNYQGAEGMKTGFHTPAGYNLITTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|319796225|ref|YP_004157865.1| beta-lactamase [Variovorax paradoxus EPS] gi|315598688|gb|ADU39754.1| Beta-lactamase [Variovorax paradoxus EPS] Length = 389 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 13/245 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++A+ D P PASLTKLM+AY+VF L+ KK LT +S A + P Sbjct: 38 YLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDALRAKKITLTQTFPVSPRAWKMP 97 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ +K LIV+S ND VA+AE + T + FV+ MN +K LG+ T Sbjct: 98 GSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGGTVEHFVELMNAQAKALGMKNT 157 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ GH TTARD++IL+ R+ DFP+ Y+ IK G P+TN Sbjct: 158 SYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYAIKKYRYPGT--PSTNDTNRNL 215 Query: 211 L-----GADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASL 259 L DG+KTG T A+G+ ++A+A + G + L++++LGA R S L Sbjct: 216 LLFRDPTVDGLKTGHTEAAGYCMIATAKRDFPNLTGGRRLLSIVLGASSETVRANESQKL 275 Query: 260 LSMGF 264 L+ G+ Sbjct: 276 LNWGY 280 >gi|293606885|ref|ZP_06689233.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] gi|292814737|gb|EFF73870.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] Length = 386 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 136/241 (56%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD +G VIA + PASLTK+MTAYVVF L +K+ + IS A + P Sbjct: 35 WLLLDETSGQVIASHAATTRIEPASLTKIMTAYVVFDALSKKELSANQTVVISTRAWKVP 94 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 +S + GS +T+D+ L+ L+++S ND A+A+AE++ + + FV MN+T+ LGL Sbjct: 95 AGSSKMFLEPGSKVTVDDLLRGLMIQSGNDAAIALAEAVSGSVEAFVARMNDTAARLGLH 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAV 207 ATHF + HG+ G Y+TA D+++L+ R D+PQ Y Y K PN N + Sbjct: 155 ATHFASPHGLPDPGTYSTASDLSVLATRFIRDYPQLYKTYDSAKQFTFNKITQPNRNRLL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS----LIAVILGALDRNTRNKVSASLLSMG 263 DG+KTG T ++G+ IVA+A + + S LI V++G R + S LL G Sbjct: 215 WLDPSVDGLKTGHTDSAGYCIVATARRPNGSDQRRLITVVVGTASDKLRTQESRQLLEWG 274 Query: 264 F 264 F Sbjct: 275 F 275 >gi|70732753|ref|YP_262516.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5] gi|68347052|gb|AAY94658.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5] Length = 385 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 YVLMDASSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA++E + +E F MN T+ +LG+S + Sbjct: 99 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVSEHIAGSEDAFADMMNKTATDLGMSNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA+L+ I + P + + K G K PN N + Sbjct: 159 HFMNPTGLPNPEHYSSAHDMAVLARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 219 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGF 272 >gi|293395975|ref|ZP_06640256.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291421473|gb|EFE94721.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 382 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 132/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G ++A+N+ D NPASLTKLMT V+ L + K L +T+ K+A + Sbjct: 33 YVLMDYASGQIMAQNHADQRRNPASLTKLMTGLVIDHALDQHKISLDDVVTVGKDA--WA 90 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M T+ + + +I+ S ND VA+A+ + ++ FV MNN + Sbjct: 91 AGNPVFKGSSLMFLKPGDRVTVRDLSRGIIIDSGNDACVAMADYVAGSQTAFVDLMNNKA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G YTTA D+A++S I P H + + L G N Sbjct: 151 AQLGLKNTHFETVHGLDAPGQYTTAGDLAVISRAIIMSEPAEYHMYSERSLTWNGITQQN 210 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T ++GFNI+ASA +GD+ LIAV++G R + + L Sbjct: 211 RNGLLW--DKTLHVDGLKTGHTESAGFNIIASATEGDRRLIAVVMGGKSPKGREEQARKL 268 Query: 260 LSMGFYN 266 LS G + Sbjct: 269 LSWGLRD 275 >gi|148554284|ref|YP_001261866.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] gi|148499474|gb|ABQ67728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] Length = 326 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 146/273 (53%), Gaps = 11/273 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK---------LPYYT--LLDTNTGHVIAENYPDHPW 51 ++L +A+A+ ++ P T P ++ L+D +T ++ P Sbjct: 8 RWLACLALALPMSVMPLPWAVSTTAPAEAASPLGAPRFSAVLMDADTNEILYAEQPTAIR 67 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 +PAS+TK+MT Y+VF L + L + +S A+ PS G ++++ +A+ ++ Sbjct: 68 HPASITKVMTLYLVFDALDAGRLKLDDRVVMSPLAASQRPSKLGLGIGQSLSVADAISVV 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 VKSAND+AVA+AE + TE F + M ++ LG+ T F NA G+ GH+T+A+D+A Sbjct: 128 AVKSANDVAVALAEKIGGTEANFARMMTAKARQLGMRQTVFANASGLPNPGHFTSAQDIA 187 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 ILS + + P H F + + N N +G G DG+KTGFT SGF + AS Sbjct: 188 ILSAAMIRNHPARYHCFSEQSFSYGKLRMANHNKLLGNVPGVDGIKTGFTNDSGFTLTAS 247 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A++ LIAV+LG+ R++ SLL+ GF Sbjct: 248 AVRNGHRLIAVVLGSPSGWQRDRDITSLLNAGF 280 >gi|209964991|ref|YP_002297906.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] gi|209958457|gb|ACI99093.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] Length = 458 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 126/235 (53%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ D PAS+TK+MT Y+ F L +K L + +S A+ PS Sbjct: 65 VIDAETGEILHAASADTRNFPASMTKMMTLYMTFDALDARKLTLDQRLKVSSRAAGMAPS 124 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+ ++ + L+ KSAND AV +AE++ TE +F + M + ++ LG+ T F Sbjct: 125 KLGLKPGETIRTEDCILSLVTKSANDCAVVLAEAIGGTETEFARMMTDRARALGMRRTTF 184 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G +TARDMA L+ + D +Y YF + KG + N N + + G Sbjct: 185 RNASGLPNAGQLSTARDMARLAQALIQDHAKYYPYFSTRQFTYKGVTHGNHNRLMARYRG 244 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 DG+KTGF ASGFN+ ASA++ + LI V+ G R+ A LL F + Sbjct: 245 MDGLKTGFIRASGFNLAASAVRDGRRLIGVVFGGETAVWRDNHMADLLDKAFEGR 299 >gi|306841894|ref|ZP_07474574.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] gi|306288024|gb|EFM59426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] Length = 472 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF E +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|311280276|ref|YP_003942507.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308749471|gb|ADO49223.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 402 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/266 (35%), Positives = 145/266 (54%), Gaps = 19/266 (7%) Query: 16 IFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + P + AE ++P + L+D +G V++E D +PASLTK+MT+YVV Sbjct: 21 VAPAVQAAEQVQMPAPPPVDAKAWILMDYASGKVLSEGSADEKLDPASLTKIMTSYVVGQ 80 Query: 68 FLKEKKAMLTTPITISKNA--SEYPPSNST----FKKGSTMTLDNALKLLIVKSANDIAV 121 LK K LT +TI ++A + P + K G +++++ K +I++S ND ++ Sbjct: 81 ALKAGKIKLTDSVTIGRDAWATGNPALRGSSVMFLKPGDQVSVEDLNKGVIIQSGNDASI 140 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIA+ + ++ FV MN+ ++ LGL+ T F HG+ G ++TARDMA+L+ + D Sbjct: 141 AIADYVAGSQDSFVGLMNSYAQKLGLTNTTFQTVHGLDAPGQFSTARDMALLTRAMIHDV 200 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 P + K + PN N W L ADG+KTG T +G+N+V+SAIQGD Sbjct: 201 PDEYAIHKEKEFTFNKIRQPNRNRLLWNAS--LNADGVKTGTTAGAGYNLVSSAIQGDMR 258 Query: 239 LIAVILGALDRNTRNKVSASLLSMGF 264 LIAV+LG R S LL+ GF Sbjct: 259 LIAVVLGTKTDRIRFNESEKLLTWGF 284 >gi|123441794|ref|YP_001005778.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088755|emb|CAL11560.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 405 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/264 (36%), Positives = 140/264 (53%), Gaps = 20/264 (7%) Query: 17 FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P+ A++ P Y L+D N+G V+AE D +PASLTK+M++YV+ +K Sbjct: 32 LPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKA 91 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKL------LIVKSANDIAVAI 123 K +T+ K+A + NS + S M L + +KL ++++S ND ++A+ Sbjct: 92 GKVHPDDLVTVGKDA--WATGNSALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIAL 149 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 A+ + ++ FV MNN +K LGL+ THFM HG+ G Y+TA DMA+L + D P Sbjct: 150 ADYIAGSQDSFVGLMNNYAKALGLNNTHFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPD 209 Query: 184 YMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + K + N N W+ T L DGMKTGFT +G N+VASA G LI Sbjct: 210 EYALHKEKEFTFNKIRQINRNRLLWS--TNLNVDGMKTGFTAGAGHNLVASATDGPMRLI 267 Query: 241 AVILGALDRNTRNKVSASLLSMGF 264 +V+LGA R S LL+ GF Sbjct: 268 SVVLGAPSDRVRFSESEKLLTWGF 291 >gi|170719804|ref|YP_001747492.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619] gi|169757807|gb|ACA71123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619] Length = 386 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T+ +LG+S + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMSNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA L+ I P + + K K PN N + Sbjct: 160 HFMNPTGLPHPDHYSSAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 220 KTVDGLKTGHTEEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 273 >gi|206576649|ref|YP_002239512.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|290510585|ref|ZP_06549955.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|206565707|gb|ACI07483.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|289777301|gb|EFD85299.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 400 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 25/273 (9%) Query: 11 AMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A+L + P + AE +LP + L+D +G V++E D +PASLTK+MT+ Sbjct: 16 ALLFLVAPAVQAAE--QLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YVV +K K LT +T+ ++A + N + S M L +++ +I++ Sbjct: 74 YVVGQAIKAGKIKLTDMVTVGRDA--WATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQ 131 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ Sbjct: 132 SGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLT 191 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ T L ADG+KTG T +G+N+V+S Sbjct: 192 KAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWS--TNLNADGVKTGTTAGAGYNLVSS 249 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A QGD LIAV+LG R S LL+ GF Sbjct: 250 ATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282 >gi|42523517|ref|NP_968897.1| hypothetical protein Bd2044 [Bdellovibrio bacteriovorus HD100] gi|39575723|emb|CAE79890.1| dacA [Bdellovibrio bacteriovorus HD100] Length = 286 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD ++G ++AE D PASLTK+MTAY+VFS ++E + + +S+ A Sbjct: 35 WVLLDASSGQILAELNKDQRLPPASLTKVMTAYMVFSEIREGRLSRMDRVKVSEQAIIRR 94 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P S+ + G +T++ L+ LIV SAND A+ +AE + ++K F + MN T++ LG++ Sbjct: 95 PEESSMYLRVGEFVTVEELLRGLIVASANDAALVLAEVVSGSQKAFTEQMNKTAQKLGMT 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + F N+ G+ HY+TA+D+ +L+ RI +FP+Y Y K L + NTN + Sbjct: 155 QSLFANSSGLYTEKHYSTAKDLGLLAVRISQEFPEYFEYSSSKELTFRDFHKKNTNDLLF 214 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVSASLLSM 262 + L DGMKTG A+G+ ++ SA + + IAV+LGA R +LL Sbjct: 215 SKLPVDGMKTGHIKAAGWCVMVSARKNKRPDKKSERYIAVVLGAPSNQDRFVAGRALLEF 274 Query: 263 GF 264 F Sbjct: 275 AF 276 >gi|90578587|ref|ZP_01234397.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90439420|gb|EAS64601.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 391 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 133/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E + NPASLTKLMT+YV +K+ + IS+NA Sbjct: 41 YVLMDYNTGQVLVEKNANEKLNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + L + + LI++S ND +VA+AE + +E+ FV MN+ +K LG+ Sbjct: 101 FPDSSKMFIEVGSEVPLMDLFRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++THF N HG+ YTT D+A+L + D P + K N N + Sbjct: 161 NSTHFANPHGLDHSDLYTTPYDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA +GD LIAV++G TR S +LL+ GF Sbjct: 221 YDKSMNVDGMKTGYTSGAGYSLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGF 278 >gi|239947237|ref|ZP_04698990.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes scapularis] gi|239921513|gb|EER21537.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFESIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE++ +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAENMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P+Y F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKYYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 IVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|218513170|ref|ZP_03510010.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli 8C-3] Length = 325 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 7/238 (2%) Query: 29 PYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P Y ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A Sbjct: 20 PKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFEALEQGRIRLDTPVPFSAHA 79 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + P+ + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG Sbjct: 80 AAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGSEDRFAQMMTAKAHALG 139 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 ++ T + NA+G+ TTARD A L ++ FPQY YF + + + + N Sbjct: 140 MTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGTRTIRSHNRL 199 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASL 259 VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG A D RN ++ L Sbjct: 200 VGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGTSGPARDAQMRNLIATYL 257 >gi|238795791|ref|ZP_04639304.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] gi|238720254|gb|EEQ12057.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] Length = 424 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 66 YVLMDFNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 125 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 126 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 185 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ THFM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 186 LGLTNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNNIRQINRN 245 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T L DGMKTGFT +G N+VASA G LI+V+LGA R S LL+ Sbjct: 246 RLLWS--TNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 303 Query: 262 MGF 264 GF Sbjct: 304 WGF 306 >gi|89076565|ref|ZP_01162873.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89047757|gb|EAR53356.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 391 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 133/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E + NPASLTKLMT+YV +K+ + IS+NA Sbjct: 41 YVLMDYNTGQVLVEKNANEKLNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + L + + LI++S ND +VA+AE + +E+ FV MN+ +K LG+ Sbjct: 101 FPDSSKMFIEVGSEVPLMDLFRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++THF N HG+ YTT D+A+L + D P + K N N + Sbjct: 161 NSTHFANPHGLDHSDLYTTPYDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA +GD LIAV++G TR S +LL+ GF Sbjct: 221 YDKSMNVDGMKTGYTSGAGYSLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGF 278 >gi|288936359|ref|YP_003440418.1| beta-lactamase [Klebsiella variicola At-22] gi|288891068|gb|ADC59386.1| Beta-lactamase [Klebsiella variicola At-22] Length = 403 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/273 (35%), Positives = 147/273 (53%), Gaps = 25/273 (9%) Query: 11 AMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A+L I P + AE +LP + L+D +G V++E D +PASLTK+MT+ Sbjct: 19 ALLFLIAPAVQAAE--QLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTS 76 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YVV +K K LT +T+ ++A + N + S M L +++ +I++ Sbjct: 77 YVVGQAIKAGKIKLTDMVTVGRDA--WATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQ 134 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++AIA+ + + FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ Sbjct: 135 SGNDASIAIADYVAGNQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLT 194 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ T L ADG+KTG T +G+N+V+S Sbjct: 195 KAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWS--TNLNADGVKTGTTAGAGYNLVSS 252 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A QGD LIAV+LG R S LL+ GF Sbjct: 253 ATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 285 >gi|157146509|ref|YP_001453828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter koseri ATCC BAA-895] gi|157083714|gb|ABV13392.1| hypothetical protein CKO_02270 [Citrobacter koseri ATCC BAA-895] Length = 413 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 144/269 (53%), Gaps = 17/269 (6%) Query: 11 AMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 A+L P L AE P + L+D ++G V+AE D +PASLTK+MT+YV Sbjct: 29 ALLFLFAPTLQAAEQTTAPPSVDARAWILMDYSSGKVLAEGNADEKLDPASLTKIMTSYV 88 Query: 65 VFSFLKEKKAMLTTPITISKNA--SEYPPSNST----FKKGSTMTLDNALKLLIVKSAND 118 V LK K LT +T+ K+A + P + K G +++ + K +I++S ND Sbjct: 89 VGQALKAGKIQLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGND 148 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L + Sbjct: 149 ACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 208 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 D P+ + K + PN N W+ + L DGMKTG T +G+N+VASA QG Sbjct: 209 HDVPEEYAIHKEKEFTFNKIRQPNRNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQG 266 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264 D LI+V+LG R S LL+ GF Sbjct: 267 DMRLISVVLGTKTDRIRFNESEKLLTWGF 295 >gi|156934665|ref|YP_001438581.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter sakazakii ATCC BAA-894] gi|156532919|gb|ABU77745.1| hypothetical protein ESA_02500 [Cronobacter sakazakii ATCC BAA-894] Length = 410 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE D +PASLTKLMT+YVV LK K L +T+ K+A + Sbjct: 52 WILMDYHSGKVLAEGNADEKLDPASLTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATG 111 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND ++AIA+ + ++ FV MN +K Sbjct: 112 NPALRGSSLMFLKPGDQVSVADLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKR 171 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 172 LGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRN 231 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + + DGMKTG T +G+N+VASA QGD LI+V+LGA R + S LL+ Sbjct: 232 RLLWS--SSMNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDGIRFRESEKLLT 289 Query: 262 MGF 264 GF Sbjct: 290 WGF 292 >gi|90414079|ref|ZP_01222062.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90324874|gb|EAS41402.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 391 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G +IAEN D +PASLTK++T+YV+ +K L +++S NA Sbjct: 41 YILMDYNSGKIIAENNSDERLHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +T+ K +I++S ND A+AE + + FV+ MN +K +G+ Sbjct: 101 FPGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTDSFVELMNAWAKRIGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++HF+N HG+ H++TA DMA L+ + D P ++ K G N N Sbjct: 161 ESSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DGMKTG T +G+++VASA +G+ LI+V++G N R S LL+ GF Sbjct: 221 W--DKSLNVDGMKTGHTDQAGYSLVASAYEGEMRLISVVMGTKSANARKAESKKLLNYGF 278 >gi|153009349|ref|YP_001370564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561237|gb|ABS14735.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 469 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 122/213 (57%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + D PASLTK+MT Y++F ++ + T I +S A+ PP+ Sbjct: 48 VIDANTGKTLFASNADAQRYPASLTKMMTLYMLFEAMQAGRMNKDTRIPVSAYAAARPPT 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E + +E++F Q M ++ LG+ T F Sbjct: 108 KIGFRSGQSIRAEDAALAMITKSANDVATAVGEYIGGSEERFAQMMTAKARRLGMRNTTF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +TTARDMAILS ++ FP YF + +G+ N +G G Sbjct: 168 RNASGLPNMAQHTTARDMAILSIALRQHFPNEFSYFSRRSFVFRGQTINGHNRLLGRVEG 227 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 DG+KTG+T ASG+N+ +S + L+AV++G Sbjct: 228 VDGIKTGYTNASGYNLASSVSLDGRRLVAVVMG 260 >gi|261825019|pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825020|pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825021|pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825022|pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825023|pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825024|pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825025|pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825026|pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825027|pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825028|pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825029|pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825030|pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment Length = 352 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 16 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATG 75 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 76 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 135 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 136 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 195 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 196 RLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 253 Query: 262 MGF 264 GF Sbjct: 254 WGF 256 >gi|239817881|ref|YP_002946791.1| beta-lactamase [Variovorax paradoxus S110] gi|239804458|gb|ACS21525.1| Beta-lactamase [Variovorax paradoxus S110] Length = 389 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 13/245 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++A+ D P PASLTKLM+AY+VF L+ KK LT + +S+ A + P Sbjct: 38 YLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDALRAKKITLTQTMPVSQRAWKMP 97 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ +K LIV+S ND VA+AE + T + FV+ MN +K LG+ T Sbjct: 98 GSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGGTVEHFVELMNAQAKALGMKNT 157 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + N G+ GH TTARD++IL+ R+ DFP+ Y+ IK G P+TN Sbjct: 158 SYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYAIKKYRYPGT--PSTNDTNRNL 215 Query: 211 L-----GADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASL 259 L DG+KTG T A+G+ ++A+A + G + L++++LG R S L Sbjct: 216 LLFRDPTVDGLKTGHTEAAGYCMIATAKRDFPNLTGGRRLLSIVLGTSGETVRANESQKL 275 Query: 260 LSMGF 264 L+ G+ Sbjct: 276 LNWGY 280 >gi|327190645|gb|EGE57733.1| putative D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 290 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + D PASLTK+MT Y+ F L + + +T+S+NA P Sbjct: 33 VVDVRSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHQGRLTWEQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L +E+ F + M + + LG+ T F Sbjct: 93 KLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFARAMTDKAHQLGMKDTVF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ TTARDMA L + DFP+ F ++G + +G K N + + G Sbjct: 153 KNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V SA++G + ++ V++G + R+ A LL Sbjct: 213 VDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTASIRDDKMAGLL 260 >gi|313500782|gb|ADR62148.1| DacA [Pseudomonas putida BIRD-1] Length = 386 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA L+ I P + + K K PN N + Sbjct: 160 HFMNPTGLPHPEHYSSAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 273 >gi|209549573|ref|YP_002281490.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535329|gb|ACI55264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 291 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 141/255 (55%), Gaps = 3/255 (1%) Query: 7 IIAMAMLSNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++A A+ S + ++AE + + ++D +G V+ + D PASLTK+MT Y+ Sbjct: 8 LLATALSSAVLLGAFTLAEAGQASF--VVDAQSGQVLEASNQDDLNYPASLTKMMTLYLA 65 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L E + +T+S+NA P G +TL A++ ++V SAND AVAIAE Sbjct: 66 FEALHEGRLTWDQKLTMSENAESKEPFKLAVGAGRQVTLREAVESIVVLSANDSAVAIAE 125 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E+ F + M + ++ LG++ T F N G+ T+ARDMA L + DFP+ Sbjct: 126 QLGGSEQAFAKAMTDKARQLGMTNTVFRNPSGLPDPEQVTSARDMATLGISLMRDFPEEF 185 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++ V++G Sbjct: 186 KLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMG 245 Query: 246 ALDRNTRNKVSASLL 260 + R+ A LL Sbjct: 246 EKTASLRDDKMAGLL 260 >gi|26991483|ref|NP_746908.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida KT2440] gi|24986562|gb|AAN70372.1|AE016679_4 D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440] Length = 386 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA L+ I P + + K K PN N + Sbjct: 160 HFMNPTGLPHPEHYSSAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 273 >gi|283784604|ref|YP_003364469.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] gi|282948058|emb|CBG87622.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] Length = 400 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +TI K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTIGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDRVAVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G Y+TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFRTVHGLDAPGQYSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + + DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNINVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|85716353|ref|ZP_01047326.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85696869|gb|EAQ34754.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 582 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 142/261 (54%), Gaps = 10/261 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF SI ++D N+G ++ PD P +PASLTK+MT Y++F L + L Sbjct: 53 PFASI----------VVDANSGATLSSVNPDSPRHPASLTKMMTLYMLFERLDAGRISLD 102 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + +S +A+ P+ ++G T+ +++A+K L+ KSAND AV IAE++ E F + Sbjct: 103 SEMRVSAHAAAQDPTKLGLRQGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARM 162 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG++ T + NA G+ TTARD A L ++ FP+Y YF +G Sbjct: 163 MTRKARALGMTRTVYRNASGLPDDDQITTARDQATLGRALQDRFPRYYRYFATTSFTFRG 222 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N +G+ G DG+KTG+ +SGFN+V + +G++ L+ V+LG ++R+ Sbjct: 223 RTVRGHNRLIGSVDGVDGIKTGYIRSSGFNLVTNIRRGNRHLVGVVLGGRSGSSRDATMR 282 Query: 258 SLLSMGFYNKTDRKKINYIIK 278 LL+ R+ + I + Sbjct: 283 KLLAENLDKAATRRTVAAIAE 303 >gi|161619123|ref|YP_001593010.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|254704458|ref|ZP_05166286.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|261755137|ref|ZP_05998846.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|161335934|gb|ABX62239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|261744890|gb|EEY32816.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] Length = 472 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|148549880|ref|YP_001269982.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1] gi|148513938|gb|ABQ80798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1] Length = 403 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + + P+T+S+NA Sbjct: 57 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTG 116 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T+ +LG++ + Sbjct: 117 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNS 176 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA L+ I P + + K K PN N + Sbjct: 177 HFMNPTGLPNPEHYSSAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 236 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 237 KTVDGLKTGHTDEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 290 >gi|162147581|ref|YP_001602042.1| penicillin-binding protein 5 [Gluconacetobacter diazotrophicus PAl 5] gi|161786158|emb|CAP55740.1| putative penicillin-binding protein 5 precursor [Gluconacetobacter diazotrophicus PAl 5] Length = 422 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 131/251 (52%), Gaps = 6/251 (2%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 I P ++A + +LD TG V+ E D P+SLTK+MTAY+VF LK + Sbjct: 69 IGPLDTVAR-----WACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLK 123 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L + +S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV Sbjct: 124 LDQMLPVSEKAWRMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFV 183 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN+ + +GLS +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K Sbjct: 184 AQMNDMAARIGLSNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRF 243 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 N N V L ADG+KTG T A GF + ASA +G ++ + G N R Sbjct: 244 NKISQGNRNVLVDKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHE 302 Query: 256 SASLLSMGFYN 266 LL F N Sbjct: 303 GERLLEWSFAN 313 >gi|23502050|ref|NP_698177.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|23348005|gb|AAN30092.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] Length = 472 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|134299097|ref|YP_001112593.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051797|gb|ABO49768.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 437 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 147/261 (56%), Gaps = 7/261 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG VI + P++PAS+TKLM Y++ + P+ SK + Sbjct: 71 LVNQDTGQVIYADQEHQPFHPASITKLMVLYILLENIHNGVLHWEDPVQASKKVERINEA 130 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G ++L+ +K ++V SAND AVA+AE + +E FV+ MN + LGL +HF Sbjct: 131 QIYLREGEVLSLEEMIKAMVVASANDAAVALAERVAGSEAAFVEIMNAKALELGLRNSHF 190 Query: 153 MNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV 207 +NA G+ + HY +A D+A+L+ + ++P+ + + ++ I+ +P NTN + Sbjct: 191 INASGLPASNSYNHYMSAYDIALLAKYLLEEYPEVLEFSRLTTTTIRNGSFPIANTNSLL 250 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--Y 265 G F G DG+KTG+T +G+ +VA+A + Q +I+V+LG+ R + +LL+ GF Y Sbjct: 251 GIFQGMDGLKTGYTDRAGWCLVATAQRNGQRMISVVLGSPSNEIRKANTTALLNYGFQHY 310 Query: 266 NKTDRKKINYIIKDFYQQNLS 286 + + +N I ++ Q L+ Sbjct: 311 QRVNNIYVNGIKCNYIQSPLA 331 >gi|167035845|ref|YP_001671076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1] gi|166862333|gb|ABZ00741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1] Length = 386 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 131/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA++E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA L+ I T P + + K K PN N + Sbjct: 160 HFMNPTGLPNPEHYSSAHDMATLARAIITVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G +R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGF 273 >gi|168240742|ref|ZP_02665674.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447475|ref|YP_002044893.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194405779|gb|ACF65998.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340371|gb|EDZ27135.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 400 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYSSGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|238650925|ref|YP_002916781.1| penicillin-binding protein dacF precursor [Rickettsia peacockii str. Rustic] gi|238625023|gb|ACR47729.1| penicillin-binding protein dacF precursor [Rickettsia peacockii str. Rustic] Length = 306 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIQIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|254689394|ref|ZP_05152648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|256257640|ref|ZP_05463176.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260883925|ref|ZP_05895539.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|297248482|ref|ZP_06932200.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|260873453|gb|EEX80522.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|297175651|gb|EFH34998.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] Length = 472 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|50121610|ref|YP_050777.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043] gi|49612136|emb|CAG75586.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043] Length = 401 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 145/273 (53%), Gaps = 20/273 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L PF + +P + L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGAVPFTYAEQLPAVPQIDAKAFILIDHDSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YV+ LK K T +T+ K+A + N + S M L ++ ++++ Sbjct: 75 YVIGQALKSGKIRPTDEVTVGKDA--WATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQ 132 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++A+A+ + ++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L Sbjct: 133 SGNDASIALADYVAGSQDSFVSLMNNYAKALNLTNTHFLTVHGLDAPGQYSTARDMALLG 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ T L DG+KTG T +G N+VAS Sbjct: 193 QALIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWS--TNLNVDGVKTGHTNGAGHNLVAS 250 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A +G+ LI+V+LGA + R + S LL+ GF Sbjct: 251 ATEGNMRLISVVLGAQTDSIRFRESEKLLTWGF 283 >gi|17987097|ref|NP_539731.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase fraction C) [Brucella melitensis bv. 1 str. 16M] gi|225852669|ref|YP_002732902.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|256044826|ref|ZP_05447730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256113731|ref|ZP_05454535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256263838|ref|ZP_05466370.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|265991251|ref|ZP_06103808.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265995087|ref|ZP_06107644.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|17982757|gb|AAL51995.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase fraction c) [Brucella melitensis bv. 1 str. 16M] gi|225641034|gb|ACO00948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|262766200|gb|EEZ11989.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263002035|gb|EEZ14610.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263093969|gb|EEZ17903.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|326409190|gb|ADZ66255.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] Length = 472 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|109897877|ref|YP_661132.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas atlantica T6c] gi|109700158|gb|ABG40078.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Pseudoalteromonas atlantica T6c] Length = 390 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 134/238 (56%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D TG VIAE D PASLTK+MT+YV+ + T +TIS+NA Sbjct: 41 FILVDFQTGKVIAEQNSDIQIPPASLTKMMTSYVIGKEIANGNIKDTDMVTISENAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ +++ + + +IV+S ND VA+AE + +E F MN ++ LG+ Sbjct: 101 FPDSSKMFIEVGTQISVGDLNRGIIVQSGNDACVAMAEHIAGSEDAFASMMNLHAEKLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++THF+N+HG+ HYTT RDMA L+ + TD P + K K N N + Sbjct: 161 TSTHFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYSEKEFTYNNIKQYNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+++V+SA QGD LIAV++GA R + LL GF Sbjct: 221 WDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADSERARKVENKKLLKYGF 278 >gi|90406825|ref|ZP_01215017.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp. CNPT3] gi|90312062|gb|EAS40155.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp. CNPT3] Length = 385 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AEN PASLTK+MT+Y++ + LK + IS+ A Sbjct: 35 YLLVDFDSGKVLAENNSQKILAPASLTKMMTSYIIGNELKVGNIHRDDKVLISEKAWSKN 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++D+ +I++S ND VA+AE + +E FV MN+ + LG+ Sbjct: 95 FPESSKMFIEVGKEVSVDDLNHGIIIQSGNDACVAMAEYIAGSEGAFVDLMNSWAIQLGM 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + THFMN+HG+ HYTTA+DMA L+ + D P+ + K + G + N N + Sbjct: 155 NNTHFMNSHGLNAKDHYTTAQDMATLAKALIRDLPEEYKLYSKKSFKYNGIEQYNRNGLL 214 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T A+G+++V+SA++GD LI+V++G RN S +L+ GF Sbjct: 215 WDKSLNVDGLKTGHTDAAGYSLVSSAVKGDMRLISVVMGTRSSTARNVESKKILNWGF 272 >gi|254693878|ref|ZP_05155706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261214165|ref|ZP_05928446.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|260915772|gb|EEX82633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] Length = 472 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|88860565|ref|ZP_01135203.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas tunicata D2] gi|88817763|gb|EAR27580.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas tunicata D2] Length = 387 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG VIAE PD PASLTK+MT+YV+ +K K +T+S+ A Sbjct: 40 YFLVDFTTGKVIAEGAPDERLAPASLTKMMTSYVIGLEIKNKNISPNDLVTVSEKAWSKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G ++++ + +I++S ND VA+AE + +E F MN ++ LG+ Sbjct: 100 FPDSSKMFIEVGKKISVEELNRGIIIQSGNDACVAMAEHIAGSESAFADLMNAHAEKLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF+N+HG+ H+TT RDMA L + D P + K G K N N Sbjct: 160 TNTHFINSHGLDTDEHFTTPRDMATLGGALIRDVPDEYAIYSEKSFTFNGIKQYNRNSLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V SA +GD L+AV++G R S LL+ GF Sbjct: 220 W--DESLDVDGIKTGHTSEAGYSLVTSATKGDMRLVAVVMGTESDRARRAESKKLLNYGF 277 >gi|262041066|ref|ZP_06014285.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041624|gb|EEW42676.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 400 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 25/273 (9%) Query: 11 AMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A+L + P + AE +LP + L+D +G V++E D +PASLTK+MT+ Sbjct: 16 ALLFLVAPAVQAAE--QLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YVV +K K LT +T+ ++A + N + S M L +++ +I++ Sbjct: 74 YVVGQAIKAGKIKLTDMVTVGRDA--WATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQ 131 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ Sbjct: 132 SGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLT 191 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ + L ADG+KTG T +G+N+V+S Sbjct: 192 KAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWS--SNLNADGVKTGTTAGAGYNLVSS 249 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A QGD LIAV+LG R S LL+ GF Sbjct: 250 ATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282 >gi|152969428|ref|YP_001334537.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330008401|ref|ZP_08306219.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|150954277|gb|ABR76307.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328535160|gb|EGF61663.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 400 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 25/273 (9%) Query: 11 AMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A+L + P + AE +LP + L+D +G V++E D +PASLTK+MT+ Sbjct: 16 ALLFLVAPAVQAAE--QLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YVV +K K LT +T+ ++A + N + S M L +++ +I++ Sbjct: 74 YVVGQAIKAGKIKLTDMVTVGRDA--WATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQ 131 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ Sbjct: 132 SGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLT 191 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ + L ADG+KTG T +G+N+V+S Sbjct: 192 KAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWS--SNLNADGVKTGTTAGAGYNLVSS 249 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A QGD LIAV+LG R S LL+ GF Sbjct: 250 ATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282 >gi|209542214|ref|YP_002274443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209529891|gb|ACI49828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 413 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 131/251 (52%), Gaps = 6/251 (2%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 I P ++A + +LD TG V+ E D P+SLTK+MTAY+VF LK + Sbjct: 60 IGPLDTVAR-----WACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLK 114 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L + +S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV Sbjct: 115 LDQMLPVSEKAWRMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFV 174 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN+ + +GLS +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K Sbjct: 175 AQMNDMAARIGLSNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRF 234 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 N N V L ADG+KTG T A GF + ASA +G ++ + G N R Sbjct: 235 NKISQGNRNVLVDKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHE 293 Query: 256 SASLLSMGFYN 266 LL F N Sbjct: 294 GERLLEWSFAN 304 >gi|144898029|emb|CAM74893.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum gryphiswaldense MSR-1] Length = 424 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 132/232 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G+V+ PD PASLTK+MT Y++F L++ K L + + +S +A+ PS Sbjct: 52 VVDADNGNVLYAVNPDRRSYPASLTKVMTLYLLFDALEQGKLTLNSRMPVSAHATRQSPS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G + +++A+ L+ KSAND+AV +AE++ +E F + M ++ LG+S+T + Sbjct: 112 KLNLKVGDRIDVEDAVLSLVTKSANDVAVVVAEAIGGSEDDFAEMMTRKARQLGMSSTTY 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ G +T RD A L+ + +Y HYF + +G+ N + + G Sbjct: 172 RNASGLPDMGQISTPRDQATLARALVKHHGRYYHYFSTRQFNWQGQPISTHNRLMLRYQG 231 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG+KTG+ ASGFN++ASA + + ++ V+ G R+ A +L GF Sbjct: 232 ADGIKTGYINASGFNLIASAKRDGKRIVGVVFGGNTAGWRDNNMAQILDKGF 283 >gi|170768996|ref|ZP_02903449.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170122068|gb|EDS90999.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 403 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +TI K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTIGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|254730424|ref|ZP_05189002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260758130|ref|ZP_05870478.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260668448|gb|EEX55388.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] Length = 472 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|210615757|ref|ZP_03290738.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787] gi|210150093|gb|EEA81102.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787] Length = 401 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/253 (36%), Positives = 140/253 (55%), Gaps = 12/253 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D PAS+TK+MT ++F L+++K LT +++S+ A+ Sbjct: 49 PSAVLMEVSTGKVIYEKAADEQLPPASVTKVMTLLLIFDALEDEKIKLTDIVSVSEYAAS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D +K + V SAND VA+AE + +E++FV MN +K LG+ Sbjct: 109 MGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEHIWGSEEEFVAKMNARAKELGME 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 T+F+N +G+ GH TTARD+A++S + T +P+ Y I KG G Sbjct: 169 HTNFLNCNGLDADGHVTTARDIALMSRELITRYPKIHDYSTIWMENITHTTKKGTTEFG- 227 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + A G+KTG T + F + A+A + D LIAVI+ A D R K + + Sbjct: 228 -LANTNKLIRQYQYATGLKTGSTSKAKFCLSATAKKDDLELIAVIMAAPDPKARFKDATT 286 Query: 259 LLSMGFYNKTDRK 271 LL+ GF T K Sbjct: 287 LLNYGFGKCTKYK 299 >gi|62290085|ref|YP_221878.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82700009|ref|YP_414583.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|148560388|ref|YP_001259090.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|163843436|ref|YP_001627840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225627640|ref|ZP_03785677.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237815590|ref|ZP_04594587.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254697529|ref|ZP_05159357.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254701913|ref|ZP_05163741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254706648|ref|ZP_05168476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710245|ref|ZP_05172056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|254714241|ref|ZP_05176052.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|254717677|ref|ZP_05179488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|256031739|ref|ZP_05445353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256061252|ref|ZP_05451403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|256159905|ref|ZP_05457627.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|256255139|ref|ZP_05460675.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260168872|ref|ZP_05755683.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. F5/99] gi|260546634|ref|ZP_05822373.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260761956|ref|ZP_05874299.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|261219519|ref|ZP_05933800.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261222337|ref|ZP_05936618.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|261314108|ref|ZP_05953305.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317805|ref|ZP_05957002.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261322014|ref|ZP_05961211.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|265988836|ref|ZP_06101393.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|294852510|ref|ZP_06793183.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|62196217|gb|AAX74517.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616110|emb|CAJ11149.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|148371645|gb|ABQ61624.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|163674159|gb|ABY38270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225617645|gb|EEH14690.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237788888|gb|EEP63099.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|260095684|gb|EEW79561.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260672388|gb|EEX59209.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260920921|gb|EEX87574.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260924608|gb|EEX91176.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294704|gb|EEX98200.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261297028|gb|EEY00525.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303134|gb|EEY06631.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|264661033|gb|EEZ31294.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|294821099|gb|EFG38098.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] Length = 472 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|260754913|ref|ZP_05867261.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260675021|gb|EEX61842.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] Length = 461 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 38 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 98 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 158 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 218 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|238751821|ref|ZP_04613308.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] gi|238709950|gb|EEQ02181.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] Length = 401 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYNSGKVLTEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL THFM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 163 LGLDNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T + DGMKTGFT +G N+VASA G LI+V+LGA R S LL+ Sbjct: 223 RLLWS--TNINVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|256369597|ref|YP_003107107.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|255999759|gb|ACU48158.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] Length = 472 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 49 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 109 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 169 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 228 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 229 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 276 >gi|260777151|ref|ZP_05886045.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260606817|gb|EEX33091.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 388 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E + NPASLTKLMTAYV +K L + ISKNA Sbjct: 39 YVLIDYNTGQVLVEKNANTKLNPASLTKLMTAYVAGQEVKAGNITLDDQVVISKNAWAKN 98 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ L + + LIV+S ND +VAIAE + +E FV MN+ ++ LGL Sbjct: 99 FPDSSKMFIEVGTTVPLMDLYRGLIVQSGNDASVAIAEYVAGSEGAFVNLMNSWAEKLGL 158 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T + N HG+ +G Y+T D+A L I D P + G N N + Sbjct: 159 ENTAYTNPHGLDSNGLYSTPMDIAKLGQAIIRDLPDIYPLYSETSYTYNGITQYNRNGLL 218 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD LIAV++GA +R S LLS GF Sbjct: 219 RDRSMNVDGMKTGYTSGAGYSLTTSATSGDMRLIAVVMGASSTKSRESESKQLLSYGF 276 >gi|260566296|ref|ZP_05836766.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260155814|gb|EEW90894.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] Length = 461 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 38 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 98 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 158 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 218 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|319944900|ref|ZP_08019162.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC 51599] gi|319741470|gb|EFV93895.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC 51599] Length = 411 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 17/283 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 +RQ L + +A + +++A++ P + L D +T V+ PD PAS Sbjct: 21 LRQRLSALMLATSLGLAAPVAMAQSLPPPDIGGRSWFLFDVSTNTVLYSQAPDERVEPAS 80 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMTAYVVF L++ + T +S+ A + S T++ L LI++S Sbjct: 81 LTKLMTAYVVFEALRDGTLNMDTRPPVSQAAYKAIGSRMFVDPRKPATVEELLHGLIIQS 140 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A+ +AE++ +E+ F Q MN ++ +G+ +HF+NA G+ HY+TARDMA+L+ Sbjct: 141 GNDAAIILAEAVSGSEEAFAQQMNAEARRIGMKNSHFVNASGLPAPEHYSTARDMALLAT 200 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI +FP Y + K G + PN N + DGMKTG T A+G+ +VASA + Sbjct: 201 RIIKEFPDYYRMYSEKEYTFNGVRQPNRNRLLYIDPSVDGMKTGHTDAAGYCLVASAHRE 260 Query: 236 DQS------------LIAVILGALDRNTRNKVSASLLSMGFYN 266 ++ +++V++GA TR S LL+ GF N Sbjct: 261 QRNAADPNGSPFSRRILSVLMGATTDATRATESQKLLNYGFQN 303 >gi|218886223|ref|YP_002435544.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757177|gb|ACL08076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 481 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 146/290 (50%), Gaps = 5/290 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG +I E D P PASLTK+++ YV ++ KA L + +S+ A S Sbjct: 84 LLDMSTGRIIYEQNADEPIPPASLTKVLSMYVALDQVRAGKASLKDTVKVSRRAFSTGGS 143 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+G T+TLD+ L+ + V S ND +VA AE + FVQ MN ++ LG+ + F Sbjct: 144 RMFLKQGETLTLDDLLEGMAVSSGNDASVATAEHIGGNVDNFVQMMNAKARALGMKNSVF 203 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N HG+ G +TTARDM LS +P+ + Y + ++ N N +G G Sbjct: 204 RNPHGLPAAGQHTTARDMLALSRAYLAQYPEALRYHSTRYIKHNKVITTNKNPLLGNCEG 263 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-KTDRK 271 ADG+KTG+ ASG+N++++ +G L+AV+LGA R + L+ GF + K Sbjct: 264 ADGLKTGWVFASGYNLISTVKRGKTRLLAVVLGAETTQARAQEVNRLVEAGFRSVAGGGK 323 Query: 272 KINYIIKDF----YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 ++ ++ D Y NL E+ T K T + AK E Sbjct: 324 SVSTLLADMRPADYALNLHKTNSEAYAELRKTSKATKARKTSVAAAKASE 373 >gi|189024322|ref|YP_001935090.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|261325261|ref|ZP_05964458.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261752478|ref|ZP_05996187.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261758361|ref|ZP_06002070.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265998302|ref|ZP_06110859.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|189019894|gb|ACD72616.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|261301241|gb|EEY04738.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261738345|gb|EEY26341.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742231|gb|EEY30157.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|262552770|gb|EEZ08760.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] Length = 461 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 38 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 98 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 158 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 218 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|34580546|ref|ZP_00142026.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246] gi|28261931|gb|EAA25435.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246] Length = 306 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|260565574|ref|ZP_05836058.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260151642|gb|EEW86736.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|326538900|gb|ADZ87115.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 461 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + D PASLTK+MT Y++F + + T I +S A+ PP+ Sbjct: 38 VVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E L +E++F Q M ++ LG+ T F Sbjct: 98 KIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ +++ARDMAIL ++ FP+ YF + +G+ N +G G Sbjct: 158 RNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V+S + L+AV++G +R+ A L+ Sbjct: 218 VDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|229586661|ref|YP_002845162.1| Penicillin-binding protein dacF precursor [Rickettsia africae ESF-5] gi|228021711|gb|ACP53419.1| Penicillin-binding protein dacF precursor [Rickettsia africae ESF-5] Length = 306 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|34498549|ref|NP_902764.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472] gi|34104404|gb|AAQ60762.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472] Length = 381 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 139/268 (51%), Gaps = 13/268 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASL 56 LV A+A+ P L A T +P Y LLD N+ V+A PD PASL Sbjct: 8 LVASALAL-----PSLGFANTAFVPPTPEIAGKAYYLLDYNSQQVLAARDPDARIEPASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TKLMTAY+ F LKEK+ L +T+S+ + S +D+ +K +IV+S Sbjct: 63 TKLMTAYLTFKALKEKRLSLEQTLTVSQRGWKTEGSRMFLDPKVPAKVDDLIKGMIVQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND V +AE++ +E F Q M + LG+ T F NA G+ GHYTT D+ IL+ Sbjct: 123 NDACVTLAEAIAGSEDVFGQLMTQQALKLGMKNTQFKNATGLPHEGHYTTVHDLGILAAA 182 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + D+P++ + +K K PN N + DGMKTG+T ++G+N+V S+ + Sbjct: 183 LIRDYPEFYPIYSMKSFTYNNIKQPNRNLLLYRDPNVDGMKTGYTDSAGYNMVTSSHRDG 242 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 + +I+V++G R S+ LL+ G Sbjct: 243 RRVISVVVGTASPEARAVESSKLLNYGL 270 >gi|187730201|ref|YP_001880973.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella boydii CDC 3083-94] gi|187427193|gb|ACD06467.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC 3083-94] Length = 400 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|171060904|ref|YP_001793253.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii SP-6] gi|170778349|gb|ACB36488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii SP-6] Length = 389 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 139/241 (57%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD + V+AE D PASLTKLMTAY+VF L++KK L +T+S+ A Sbjct: 40 YLLLDVSANQVLAERDADATVEPASLTKLMTAYLVFQALRDKKLALEQELTVSERAWRTG 99 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ++++ + G+ + +++ +K +IV+S ND V +AE++ T + FV MN ++ GL Sbjct: 100 MTDTSRMYIQVGTKVKVEDLIKGMIVQSGNDATVQLAEAVGGTLENFVVLMNRQAQAFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T F N G+ GH +TAR+++I++ R+ DFP Y+ +K K PN N + Sbjct: 160 KVTQFRNPEGLPAPGHVSTARELSIIASRLLVDFPAEARYYTLKEFTFNKIKQPNRNLLL 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNKVSASLLSMG 263 DG+KTG+T +G+ ++A+A + G + L++VILGA + +R + LL+ G Sbjct: 220 WRDPTVDGLKTGYTDNAGYCLIATAKRDLPAGQRRLVSVILGASSKESRATEAQKLLNWG 279 Query: 264 F 264 + Sbjct: 280 Y 280 >gi|325293678|ref|YP_004279542.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325061531|gb|ADY65222.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 433 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+A D +PASLTK+MT Y+ F L + I +S+N + PS Sbjct: 39 IMDANTGKVLAAQNADVLNHPASLTKMMTLYMTFEALHAGRIRWDQKIRMSRNGAAVIPS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G T T+ A+ +IVKSAND+A + + L +E +F Q M ++ LG++ T F Sbjct: 99 KLYVREGQTFTVREAVYGMIVKSANDMAEGMGDHLGGSEAQFAQMMTRKARQLGMTKTVF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARDMA L ++ DFP+ F ++ +GK+ N + + G Sbjct: 159 RNASGLPSKSQVTTARDMAKLGLALQRDFPKEYGLFAMESFSFRGKRIRGHNNLMYRYQG 218 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASGFN+V++ + ++ V+LG R+ A+LL Sbjct: 219 MDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKTARGRDAQMAALL 266 >gi|309786587|ref|ZP_07681209.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|308925554|gb|EFP71039.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] Length = 364 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 6 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTG 65 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 66 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 125 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 126 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 185 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 186 RLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLA 243 Query: 262 MGF 264 GF Sbjct: 244 WGF 246 >gi|157964469|ref|YP_001499293.1| penicillin-binding protein dacF precursor [Rickettsia massiliae MTU5] gi|157844245|gb|ABV84746.1| Penicillin-binding protein dacF precursor [Rickettsia massiliae MTU5] Length = 313 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 33 AVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 92 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S AS+ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 93 KLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 152 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARDMA L+ +K D+P++ F +G Sbjct: 153 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGN 212 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 213 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMG 272 Query: 259 LLSMGF 264 LL F Sbjct: 273 LLDQHF 278 >gi|86357827|ref|YP_469719.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CFN 42] gi|86281929|gb|ABC90992.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CFN 42] Length = 525 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A+ P+ Sbjct: 58 VVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPT 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG++ T + Sbjct: 118 KLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGSEDRFAQMMTAKAHALGMTRTTY 177 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ G Sbjct: 178 RNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRG 237 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+T A+GFN+V+S +S+++V+LG R+ Sbjct: 238 VDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGASGPARD 278 >gi|313650258|gb|EFS14670.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str. 2457T] gi|332759746|gb|EGJ90049.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 4343-70] gi|332760581|gb|EGJ90870.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2747-71] gi|332763049|gb|EGJ93294.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671] gi|332768006|gb|EGJ98192.1| penicillin-binding protein 6 [Shigella flexneri 2930-71] gi|333007039|gb|EGK26534.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218] gi|333020974|gb|EGK40232.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304] Length = 321 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|331656861|ref|ZP_08357823.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA206] gi|331055109|gb|EGI27118.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA206] Length = 392 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 34 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 91 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 92 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 151 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 152 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 211 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 212 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 269 Query: 260 LSMGF 264 L+ GF Sbjct: 270 LTWGF 274 >gi|15800591|ref|NP_286605.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 EDL933] gi|15830173|ref|NP_308946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. Sakai] gi|110641041|ref|YP_668771.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 536] gi|157157612|ref|YP_001462035.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli E24377A] gi|195936884|ref|ZP_03082266.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. EC4024] gi|209918088|ref|YP_002292172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli SE11] gi|215485925|ref|YP_002328356.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O127:H6 str. E2348/69] gi|218553425|ref|YP_002386338.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli IAI1] gi|218688622|ref|YP_002396834.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli ED1a] gi|218694313|ref|YP_002401980.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 55989] gi|218699214|ref|YP_002406843.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli IAI39] gi|218704263|ref|YP_002411782.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UMN026] gi|254792035|ref|YP_003076872.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. TW14359] gi|260843090|ref|YP_003220868.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2 str. 12009] gi|260854131|ref|YP_003228022.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11 str. 11368] gi|260867013|ref|YP_003233415.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H- str. 11128] gi|261225489|ref|ZP_05939770.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O157:H7 str. FRIK2000] gi|293433137|ref|ZP_06661565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B088] gi|306812759|ref|ZP_07446952.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli NC101] gi|307314524|ref|ZP_07594127.1| Beta-lactamase [Escherichia coli W] gi|312969138|ref|ZP_07783345.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|12513851|gb|AAG55215.1|AE005265_5 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Escherichia coli O157:H7 str. EDL933] gi|13360378|dbj|BAB34342.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli O157:H7 str. Sakai] gi|110342633|gb|ABG68870.1| penicillin-binding protein 6 precursor [Escherichia coli 536] gi|157079642|gb|ABV19350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|209775538|gb|ACI86081.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775540|gb|ACI86082.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775542|gb|ACI86083.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775544|gb|ACI86084.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775546|gb|ACI86085.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209911347|dbj|BAG76421.1| penicillin-binding protein 6 [Escherichia coli SE11] gi|215263997|emb|CAS08338.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O127:H6 str. E2348/69] gi|218351045|emb|CAU96749.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli 55989] gi|218360193|emb|CAQ97743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli IAI1] gi|218369200|emb|CAR16955.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli IAI39] gi|218426186|emb|CAR07008.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli ED1a] gi|218431360|emb|CAR12238.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli UMN026] gi|222032568|emb|CAP75307.1| Penicillin-binding protein 6 [Escherichia coli LF82] gi|254591435|gb|ACT70796.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O157:H7 str. TW14359] gi|257752780|dbj|BAI24282.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11 str. 11368] gi|257758237|dbj|BAI29734.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2 str. 12009] gi|257763369|dbj|BAI34864.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H- str. 11128] gi|281177974|dbj|BAI54304.1| penicillin-binding protein 6 [Escherichia coli SE15] gi|284920692|emb|CBG33755.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli 042] gi|291323956|gb|EFE63378.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B088] gi|305853522|gb|EFM53961.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli NC101] gi|306905947|gb|EFN36469.1| Beta-lactamase [Escherichia coli W] gi|307552682|gb|ADN45457.1| penicillin-binding protein 6 precursor [Escherichia coli ABU 83972] gi|312286540|gb|EFR14453.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312945356|gb|ADR26183.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O83:H1 str. NRG 857C] gi|315060077|gb|ADT74404.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli W] gi|320637705|gb|EFX07497.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. G5101] gi|320642829|gb|EFX12030.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H- str. 493-89] gi|320648286|gb|EFX16941.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H- str. H 2687] gi|320654123|gb|EFX22191.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659747|gb|EFX27303.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O55:H7 str. USDA 5905] gi|320664217|gb|EFX31368.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. LSU-61] gi|323155789|gb|EFZ41958.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14] gi|323159661|gb|EFZ45640.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010] gi|323165770|gb|EFZ51556.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G] gi|323172242|gb|EFZ57880.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68] gi|323175540|gb|EFZ61135.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180] gi|323185244|gb|EFZ70609.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357] gi|323191008|gb|EFZ76275.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1] gi|323379365|gb|ADX51633.1| Beta-lactamase [Escherichia coli KO11] gi|327253626|gb|EGE65255.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v] Length = 400 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|213648937|ref|ZP_03378990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 387 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|90411493|ref|ZP_01219504.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90327706|gb|EAS44049.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 400 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--E 88 Y L+D +G +IAEN P PASLTKLMTAYVV + K+ +T+ +NA + Sbjct: 39 YVLMDFQSGSIIAENNPRDALAPASLTKLMTAYVVGQEINTKRLKWDDMVTVGENAWSLK 98 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K G ++++N ++ +I++S ND +VA+AE + +E FV MN +K L L Sbjct: 99 FPDSSKMFIKPGDEISVENLMRGVIIQSGNDASVALAEYIAGSESGFVNLMNGWAKTLKL 158 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T F+NAHG+ G T+ DMA L I D P +Q K N N Sbjct: 159 QDTRFINAHGLDGEGIQTSPADMATLMRHIIRDVPDVYALYQDKQFAWNDITQFNRNKLL 218 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG KTG+T +G+++V+SA +G + LIAV++G + R + S +LLS GF Sbjct: 219 W--DKALNVDGGKTGYTEQAGYSLVSSATEGSRRLIAVVMGTPSQTIRAEASKNLLSYGF 276 >gi|16128807|ref|NP_415360.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. MG1655] gi|89107690|ref|AP_001470.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|157160319|ref|YP_001457637.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli HS] gi|170020804|ref|YP_001725758.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli ATCC 8739] gi|170080498|ref|YP_001729818.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. DH10B] gi|188494572|ref|ZP_03001842.1| penicillin-binding protein 6 [Escherichia coli 53638] gi|238900098|ref|YP_002925894.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BW2952] gi|253774159|ref|YP_003036990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160916|ref|YP_003044024.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B str. REL606] gi|256023565|ref|ZP_05437430.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia sp. 4_1_40B] gi|297518732|ref|ZP_06937118.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli OP50] gi|312970918|ref|ZP_07785097.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|2506804|sp|P08506|DACC_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6; Short=PBP-6; Flags: Precursor gi|1651381|dbj|BAA35542.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. MG1655] gi|157065999|gb|ABV05254.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS] gi|169755732|gb|ACA78431.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] gi|169888333|gb|ACB02040.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. DH10B] gi|188489771|gb|EDU64874.1| penicillin-binding protein 6 [Escherichia coli 53638] gi|238860730|gb|ACR62728.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BW2952] gi|242376630|emb|CAQ31340.1| penicillin-binding protein 6 [Escherichia coli BL21(DE3)] gi|253325203|gb|ACT29805.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972817|gb|ACT38488.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli B str. REL606] gi|253977037|gb|ACT42707.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BL21(DE3)] gi|309701117|emb|CBJ00415.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli ETEC H10407] gi|310336679|gb|EFQ01846.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|315619844|gb|EFV00363.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431] gi|332342172|gb|AEE55506.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88] Length = 400 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|218557743|ref|YP_002390656.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli S88] gi|218364512|emb|CAR02194.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli S88] gi|294493575|gb|ADE92331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034] gi|307627752|gb|ADN72056.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UM146] Length = 400 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|213428063|ref|ZP_03360813.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 402 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|161503974|ref|YP_001571086.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865321|gb|ABX21944.1| hypothetical protein SARI_02067 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYALHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLQVDGMKTGTTSGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|320186097|gb|EFW60841.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83] Length = 403 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKDVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|323227523|gb|EGA11683.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 402 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|91209873|ref|YP_539859.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UTI89] gi|117623019|ref|YP_851932.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli APEC O1] gi|237707198|ref|ZP_04537679.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA] gi|91071447|gb|ABE06328.1| penicillin-binding protein 6 precursor [Escherichia coli UTI89] gi|115512143|gb|ABJ00218.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli APEC O1] gi|226898408|gb|EEH84667.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA] gi|315287329|gb|EFU46740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|323953500|gb|EGB49366.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323958128|gb|EGB53837.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] Length = 407 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|24112205|ref|NP_706715.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] gi|24051049|gb|AAN42422.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] Length = 338 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|77166090|ref|YP_344615.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosococcus oceani ATCC 19707] gi|254435823|ref|ZP_05049330.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani AFC27] gi|76884404|gb|ABA59085.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosococcus oceani ATCC 19707] gi|207088934|gb|EDZ66206.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani AFC27] Length = 382 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 132/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L + IS+ A Sbjct: 40 YLLQDFATGRVLAESQADERIEPASITKLMTAYVVFKELKQGRIHLADEVLISEKAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + + + ++ +K +I++S ND +VA+AE + TE+ F MN ++ LG++ + Sbjct: 100 GSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEHVGGTEEIFAALMNQQAQLLGMTGS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N+ G+ HY TARD+A L I DFP+Y ++ + G N N + Sbjct: 160 HFVNSTGLPHSNHYMTARDIATLGRAIIRDFPKYYSWYSEQAFTYNGITQYNRNLLLRRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG KTG T ++G+ + +SA++ LIAV++G R + S +LL+ GF Sbjct: 220 SSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRAQESLALLNYGF 273 >gi|300916310|ref|ZP_07133057.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300416399|gb|EFJ99709.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] Length = 407 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDIVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|331682347|ref|ZP_08382966.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H299] gi|331079978|gb|EGI51157.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H299] Length = 403 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|325276744|ref|ZP_08142459.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51] gi|324098127|gb|EGB96258.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51] Length = 386 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 40 YVLMDASSGNVLVENNGDERLPPASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA++E + +E F MN T+ +LG++ + Sbjct: 100 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA+L+ I P + + K K PN N + Sbjct: 160 HFMNPTGLPNPDHYSSAHDMAVLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTEEAGYCMVASAVRDGQRLIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|238893899|ref|YP_002918633.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella pneumoniae NTUH-K2044] gi|238546215|dbj|BAH62566.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 428 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 25/273 (9%) Query: 11 AMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A+L + P + AE +LP + L+D +G V++E D +PASLTK+MT+ Sbjct: 44 ALLFLVAPAVQAAE--QLPDAPSINARAWILMDYASGKVLSEGNADEKLDPASLTKIMTS 101 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YVV +K K LT +T+ ++A + N + S M L +++ +I++ Sbjct: 102 YVVGQAIKAGKIKLTDMVTVGRDA--WATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQ 159 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ Sbjct: 160 SGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLT 219 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ + L ADG+KTG T +G+N+V+S Sbjct: 220 KAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWS--SNLNADGVKTGTTAGAGYNLVSS 277 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A QGD LIAV+LG R S LL+ GF Sbjct: 278 ATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 310 >gi|26246814|ref|NP_752854.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli CFT073] gi|227884197|ref|ZP_04002002.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 83972] gi|261258542|ref|ZP_05951075.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. FRIK966] gi|293409214|ref|ZP_06652790.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B354] gi|300817100|ref|ZP_07097319.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300823980|ref|ZP_07104102.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300895754|ref|ZP_07114347.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300907171|ref|ZP_07124834.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300924447|ref|ZP_07140417.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300939883|ref|ZP_07154518.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300991867|ref|ZP_07179692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300993443|ref|ZP_07180385.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|301020649|ref|ZP_07184722.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301051233|ref|ZP_07198062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301303598|ref|ZP_07209720.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|301325847|ref|ZP_07219280.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|309795413|ref|ZP_07689831.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|331646058|ref|ZP_08347161.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M605] gi|331651852|ref|ZP_08352871.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M718] gi|331676578|ref|ZP_08377274.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H591] gi|26107214|gb|AAN79397.1|AE016758_1 Penicillin-binding protein 6 precursor [Escherichia coli CFT073] gi|227838949|gb|EEJ49415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 83972] gi|291469682|gb|EFF12166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B354] gi|300297140|gb|EFJ53525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300305477|gb|EFJ59997.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300360328|gb|EFJ76198.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300398577|gb|EFJ82115.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|300401046|gb|EFJ84584.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300406557|gb|EFJ90095.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300419332|gb|EFK02643.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300455265|gb|EFK18758.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300523491|gb|EFK44560.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300530452|gb|EFK51514.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300841097|gb|EFK68857.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300847361|gb|EFK75121.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|308121063|gb|EFO58325.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|315257828|gb|EFU37796.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] gi|315292514|gb|EFU51866.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] gi|315299413|gb|EFU58665.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] gi|323947137|gb|EGB43148.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] gi|323967274|gb|EGB62697.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] gi|323969597|gb|EGB64885.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|324009727|gb|EGB78946.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|324013062|gb|EGB82281.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] gi|324015963|gb|EGB85182.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] gi|324116152|gb|EGC10075.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] gi|331044810|gb|EGI16937.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M605] gi|331050130|gb|EGI22188.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M718] gi|331075267|gb|EGI46565.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H591] Length = 407 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|166030455|ref|ZP_02233284.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC 27755] gi|166029813|gb|EDR48570.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC 27755] Length = 426 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 13/261 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D PAS+TK+MT ++F L+E K L +T S+ A+ Sbjct: 74 PSALLMEASTGQVIYEKDADSKRPPASVTKVMTLLLIFDALQEGKIHLEDEVTTSEYAAS 133 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T++ +K + V SAND V +AE +C E++FV MN +K LG+ Sbjct: 134 MGGSQVFLEPGEVQTVETLIKCISVASANDACVCMAEYICGNEQEFVNQMNERAKGLGME 193 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGK---KY 200 THF+N +G+ GH TTARD+A++S + +PQ Y I +I KG Sbjct: 194 NTHFVNCNGLDAEGHVTTARDIALMSRELIHTYPQIFDYCNIWMEDITHTTKKGSTQFGL 253 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + A G+KTG T + F I A+A + + +IAVI+ A D R + + +LL Sbjct: 254 TNTNKMIRQYEYATGLKTGSTSQAKFCISATARKDNTDMIAVIMAADDSKARMRDAITLL 313 Query: 261 SMGF-----YNKTDRKKINYI 276 + GF Y + KKI + Sbjct: 314 NYGFGKCQKYQEDTVKKIQDV 334 >gi|300929353|ref|ZP_07144826.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300947071|ref|ZP_07161292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300957042|ref|ZP_07169288.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|301646276|ref|ZP_07246167.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|331641359|ref|ZP_08342494.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H736] gi|300316182|gb|EFJ65966.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300453310|gb|EFK16930.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300462699|gb|EFK26192.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|301075479|gb|EFK90285.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|323938194|gb|EGB34454.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] gi|323942711|gb|EGB38876.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] gi|323962952|gb|EGB58524.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] gi|331038157|gb|EGI10377.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H736] Length = 407 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|261855867|ref|YP_003263150.1| beta-lactamase [Halothiobacillus neapolitanus c2] gi|261836336|gb|ACX96103.1| Beta-lactamase [Halothiobacillus neapolitanus c2] Length = 425 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 128/242 (52%), Gaps = 15/242 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD NTG +I + D P PAS+TKLMT+Y+VFS LK + +TISK A E Sbjct: 82 YVLLDANTGQIIVQKNADEPVPPASITKLMTSYLVFSALKSGNIHMDDMVTISKKAWEMQ 141 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +++ N L +IV+S ND A A+AE + E+ FV MN T+K LG++ T Sbjct: 142 GSKMFIEVGKQVSVKNLLMGMIVQSGNDAATALAEYVGGNEQSFVSLMNATAKKLGMTKT 201 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-YFQIKGLEIKGKKYPNT------ 203 H+ + G GH +ARD++ L + FP Y H +F+ K G K N Sbjct: 202 HYEDPTGWPADGHVMSARDISTLFNALVKHFPNYYHEFFRQKVFTWNGIKQYNREKLLFR 261 Query: 204 -NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 NW DG KTG T +GF + S Q LIAV+LG + RN + +LL+ Sbjct: 262 DNW-------VDGGKTGHTEEAGFCLATSGQQNGMRLIAVVLGTESDDARNNEAEALLNY 314 Query: 263 GF 264 GF Sbjct: 315 GF 316 >gi|150395730|ref|YP_001326197.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150027245|gb|ABR59362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 405 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 135/228 (59%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++ PD +PASLTK+MT Y+ F L + TP+ +S A+ PP+ Sbjct: 29 VVDARTGRVLSAENPDTLNHPASLTKMMTLYMTFEALHRGQLAWKTPVPMSATAARKPPT 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T+ A+ +IV+SAND A A+AE L TE+ F + MN ++ LG++ T F Sbjct: 89 KLGVRPGETITVQEAVYGMIVRSANDAAAAMAERLGGTEEGFARMMNAKARQLGMNRTFF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMA L+ + +P+ F ++ +G+ N + + G Sbjct: 149 VNASGLPASEQVTTARDMARLAVALMRHYPREYRLFSVQSFAFRGRVIRGHNNLMYRYQG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V++ +G++ LI V+LG +R++ A+LL Sbjct: 209 MDGIKTGYTRASGYNLVSAVAEGNRRLIGVVLGGRSARSRDEKMAALL 256 >gi|82776165|ref|YP_402512.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella dysenteriae Sd197] gi|81240313|gb|ABB61023.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197] Length = 400 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLA 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|296537403|ref|ZP_06899250.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296262269|gb|EFH09047.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 375 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 128/232 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E D P+S++KLMT YVVF LK+ + L + +S+ A S Sbjct: 34 LMDADTGAVLLEKSADERMPPSSMSKLMTMYVVFDLLKQGRLRLDQTLPVSERAWRMGGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GS ++++N + +I++S ND + +AE + +E++F + +N ++ LGL+ + F Sbjct: 94 KMFVELGSAVSVENLARGVIIQSGNDACIVLAEGISGSEQQFAELLNEYARKLGLNDSTF 153 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G H TARD+A L+ + DFPQY ++ + + G N N +G G Sbjct: 154 RNATGWPDPEHRMTARDLATLARHLINDFPQYFAFYSERSFQWNGINQENRNPLLGRVPG 213 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG+KTG T +G+ + + +GD+ LI V+ G R + S L+ GF Sbjct: 214 ADGLKTGHTEDAGYGLTGTVKRGDRRLILVVNGLTSMRARGEESERLMEWGF 265 >gi|157962970|ref|YP_001503004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC 700345] gi|157847970|gb|ABV88469.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC 700345] Length = 390 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG +IAE NPASLTK+MT+YV+ +K + +TISK A Sbjct: 40 YVLMDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKKAWSKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +T+++ K +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 100 FPDSSKMFIEVGKKVTVEDLNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H +TA DMAIL I D P+ ++ K G K N N Sbjct: 160 QDSYFENSHGLDSDNHKSTAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +GFN+V SA + LI+V++G R S LL+ GF Sbjct: 220 W--DKSLSVDGIKTGHTSGAGFNLVTSATKDGMRLISVVMGTKSEAARKAESKKLLNYGF 277 >gi|170681795|ref|YP_001742946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli SMS-3-5] gi|187776239|ref|ZP_02801387.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188024947|ref|ZP_02775045.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189010000|ref|ZP_02804398.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189402327|ref|ZP_02781640.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189402936|ref|ZP_02792356.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189404286|ref|ZP_02788318.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189404921|ref|ZP_02812067.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|189405883|ref|ZP_02824886.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|191166209|ref|ZP_03028043.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|191173711|ref|ZP_03035234.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|193064478|ref|ZP_03045559.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|193069405|ref|ZP_03050360.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|194428152|ref|ZP_03060695.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|208814959|ref|ZP_03256138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208822498|ref|ZP_03262817.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209400303|ref|YP_002269508.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|217324128|ref|ZP_03440212.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|291281838|ref|YP_003498656.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615] gi|293404143|ref|ZP_06648137.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1412] gi|293414116|ref|ZP_06656765.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B185] gi|298379925|ref|ZP_06989530.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1302] gi|331662200|ref|ZP_08363123.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA143] gi|331667211|ref|ZP_08368076.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA271] gi|170519513|gb|ACB17691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|187768212|gb|EDU32056.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188015679|gb|EDU53801.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189002710|gb|EDU71696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189356271|gb|EDU74690.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189363476|gb|EDU81895.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189366544|gb|EDU84960.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189373161|gb|EDU91577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|189377784|gb|EDU96200.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|190903818|gb|EDV63533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190905961|gb|EDV65577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|192928940|gb|EDV82553.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|192957358|gb|EDV87806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|194413712|gb|EDX29991.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|208731607|gb|EDZ80295.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208737983|gb|EDZ85666.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209161703|gb|ACI39136.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|217320349|gb|EEC28773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|290761711|gb|ADD55672.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615] gi|291428729|gb|EFF01754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1412] gi|291434174|gb|EFF07147.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B185] gi|298279623|gb|EFI21131.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1302] gi|320192682|gb|EFW67323.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320196666|gb|EFW71289.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|320199030|gb|EFW73627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|326338272|gb|EGD62101.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|326346249|gb|EGD69987.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|330910581|gb|EGH39091.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331060622|gb|EGI32586.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA143] gi|331065567|gb|EGI37460.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA271] Length = 403 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|239996931|ref|ZP_04717455.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas macleodii ATCC 27126] Length = 394 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FLVI + +N A + + L D TGHVIA D PASLTK+MT Y Sbjct: 17 FLVIGTLLHTANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76 Query: 64 VVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIA 120 V+ L+ L +TIS+NA ++P S+ F + G+ +++ + L+ ++V+S ND Sbjct: 77 VIGKELQAGNISLDDEVTISENAWAKKFPDSSKMFIEVGTQVSVRDLLRGIVVQSGNDAC 136 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN + +LG+S +H++NAHG+ HYTT RDMAILS + + Sbjct: 137 VAMAEHVAGSESAFASMMNAHTASLGMSGSHWVNAHGLHDPDHYTTPRDMAILSRALIAE 196 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P+ + K G K N N W L DG+KTG T +G++++ SA QG Sbjct: 197 TPEMYKIYSEKEFTYNGIKQYNRNSLLW--DKSLNVDGIKTGHTSDAGYSLITSAEQGGM 254 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGF 264 LI+V++G R + LL GF Sbjct: 255 RLISVVMGTDSERARKVENKKLLKYGF 281 >gi|41218|emb|CAA29775.1| unnamed protein product [Escherichia coli K-12] Length = 400 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNEDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|237730821|ref|ZP_04561302.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp. 30_2] gi|226906360|gb|EEH92278.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp. 30_2] Length = 407 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 146/281 (51%), Gaps = 23/281 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 +R F A+ +L + P + AE P + L+D +G V+AE D +PA Sbjct: 15 LRSFAAGSALLIL--LAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPA 72 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--------DN 106 SLTK+MT+YVV LK K L +T+ K+A + N + S M L + Sbjct: 73 SLTKIMTSYVVGQALKAGKINLNDMVTVGKDA--WATGNPALRGSSVMFLKPGDQVAVSD 130 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++T Sbjct: 131 LNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFST 190 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCA 223 ARDMA+L + D P+ + K + PN N W+ T L DGMKTG T Sbjct: 191 ARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWS--TNLNVDGMKTGTTAG 248 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+N+VASA QGD LI+V+LGA R S LL+ GF Sbjct: 249 AGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289 >gi|194438401|ref|ZP_03070491.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|301027029|ref|ZP_07190410.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|307137467|ref|ZP_07496823.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli H736] gi|194422625|gb|EDX38622.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|299879457|gb|EFI87668.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] Length = 403 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|323976776|gb|EGB71864.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] Length = 407 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|16759773|ref|NP_455390.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142454|ref|NP_805796.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414047|ref|YP_151122.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179427|ref|YP_215844.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614874|ref|YP_001588839.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168263619|ref|ZP_02685592.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194445951|ref|YP_002040103.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470485|ref|ZP_03076469.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262228|ref|ZP_03162302.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362970|ref|YP_002142607.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200391099|ref|ZP_03217710.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352115|ref|YP_002225916.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856297|ref|YP_002242948.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213583237|ref|ZP_03365063.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612370|ref|ZP_03370196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|224582675|ref|YP_002636473.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289827182|ref|ZP_06545924.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25297768|pir||AD0604 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502066|emb|CAD05302.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138084|gb|AAO69645.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128304|gb|AAV77810.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127060|gb|AAX64763.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364238|gb|ABX68006.1| hypothetical protein SPAB_02628 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404614|gb|ACF64836.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456849|gb|EDX45688.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197094447|emb|CAR59963.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240483|gb|EDY23103.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603544|gb|EDZ02090.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271896|emb|CAR36737.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205347698|gb|EDZ34329.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708100|emb|CAR32392.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467202|gb|ACN45032.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320085138|emb|CBY94925.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322713895|gb|EFZ05466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622581|gb|EGE28926.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627157|gb|EGE33500.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 400 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|238913835|ref|ZP_04657672.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 400 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|204930006|ref|ZP_03221027.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321000|gb|EDZ06201.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 400 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|256828650|ref|YP_003157378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium baculatum DSM 4028] gi|256577826|gb|ACU88962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium baculatum DSM 4028] Length = 401 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 1/241 (0%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ +TG V E+ PD PAS+TKL+T Y++ L + + TPI +S A + S Sbjct: 148 INMSTGDVYYEHNPDKTIAPASITKLLTLYIIREALAQGRLSQATPIPVSAEAVKTGGSR 207 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHF 152 K+ + L +K + V SAN+ VA+AE K + KFV MN +K +G+ + F Sbjct: 208 MRLKRNEKVPLGELIKGISVVSANNACVAVAEYFGKGDPSKFVAQMNEKAKKIGMVNSRF 267 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ G +TARD+A LS FP+ + + G + N N + T+ G Sbjct: 268 KNPNGLPASGQLSTARDIAKLSVAYLRTFPESLKVHSMTSHTFHGATHRNANTLLRTYKG 327 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTGF C +G+NI A+A +G L+AV+LGA + R + +A LL GF D +K Sbjct: 328 VDGLKTGFVCDAGYNITATAKRGKTRLVAVVLGAQNSAVRQRETARLLDYGFRRAADEEK 387 Query: 273 I 273 + Sbjct: 388 L 388 >gi|300113196|ref|YP_003759771.1| beta-lactamase [Nitrosococcus watsonii C-113] gi|299539133|gb|ADJ27450.1| Beta-lactamase [Nitrosococcus watsonii C-113] Length = 389 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 132/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L + IS+ A Sbjct: 47 YLLQDFATGRVLAEHQADERIEPASITKLMTAYVVFKELKQGRIHLADEVLISEKAWRTG 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + + + ++ +K +I++S ND +VA+AE + TE+ F MN ++ LG++ + Sbjct: 107 GSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEYVGGTEEIFAALMNQQAQLLGMTGS 166 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N+ G+ HY TARD+A L I DFP+Y ++ + G N N + Sbjct: 167 HFVNSTGLPHENHYMTARDIATLGRAIILDFPKYYDWYSEQAFTYNGITQYNRNLLLRRD 226 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG KTG T ++G+ + +SA++ LIAV++G R + S +LL+ GF Sbjct: 227 SSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRMQESLALLNYGF 280 >gi|323493053|ref|ZP_08098187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] gi|323312701|gb|EGA65831.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] Length = 398 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y LLD +TG V+ E D NPASLTKLMTAYV +K L + IS+NA Sbjct: 49 YILLDYHTGTVLVEKNADKKLNPASLTKLMTAYVAGQEVKSGNISLDDQVRISRNAWAKN 108 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + L + + LIV+S ND +VAIAE + +E FV MN+ S+ LGL Sbjct: 109 FPDSSKMFIEVGTDVELMDLYRGLIVQSGNDASVAIAEHVAGSEDAFVSLMNSWSQKLGL 168 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T + N HG+ G Y+T D+A LS I D P + G N N + Sbjct: 169 ENTAYTNPHGLDSQGLYSTPHDIARLSQAIIRDLPDIYPLYSETAFTYNGITQYNRNGLL 228 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ SA GD L++V++G+ +R S LLS GF Sbjct: 229 RDRSLNVDGMKTGYTSGAGYSLATSATNGDMRLVSVVMGSSSTKSRESESKQLLSYGF 286 >gi|332993383|gb|AEF03438.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas sp. SN2] Length = 394 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 146/267 (54%), Gaps = 8/267 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F++ A+ + +N A + + L D TGHVIA D PASLTK+MT Y Sbjct: 17 FMLFSALVLSANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76 Query: 64 VVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIA 120 V+ L+ L+ +TIS+NA ++P S+ F + G+ +++ + L+ ++V+S ND Sbjct: 77 VIGKELQAGNISLSDEVTISENAWAKKFPDSSKMFIEVGTQVSVSDLLRGIVVQSGNDAC 136 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + ++ F MN ++ +G+++++F+NAHG+ HYTT RDMA+LS + + Sbjct: 137 VAMAEHVAGSQAAFASMMNAHAQAIGMTSSNFVNAHGLHDPDHYTTPRDMAVLSRALIAE 196 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P+ + K G K N N W L DG+KTG T +G++++ SA QGD Sbjct: 197 TPEMYKIYSEKEFTFNGIKQYNRNSLLW--DKSLNVDGIKTGHTSDAGYSLITSASQGDM 254 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGF 264 LI+V++G R + LL GF Sbjct: 255 RLISVVMGTDSERARKVENKKLLKYGF 281 >gi|322616338|gb|EFY13247.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619588|gb|EFY16463.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622716|gb|EFY19561.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628628|gb|EFY25415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631565|gb|EFY28321.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637092|gb|EFY33795.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641708|gb|EFY38344.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644498|gb|EFY41038.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648431|gb|EFY44883.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654166|gb|EFY50489.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658081|gb|EFY54348.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663555|gb|EFY59757.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670291|gb|EFY66431.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671527|gb|EFY67649.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676883|gb|EFY72950.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682808|gb|EFY78827.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686487|gb|EFY82469.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196059|gb|EFZ81222.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196794|gb|EFZ81938.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204806|gb|EFZ89801.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208966|gb|EFZ93903.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209715|gb|EFZ94642.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215197|gb|EFZ99942.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222423|gb|EGA06799.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229875|gb|EGA13998.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233100|gb|EGA17196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240835|gb|EGA24877.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243152|gb|EGA27172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248693|gb|EGA32621.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251695|gb|EGA35562.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257509|gb|EGA41197.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261490|gb|EGA45071.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267921|gb|EGA51400.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272012|gb|EGA55427.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 400 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|16764225|ref|NP_459840.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992114|ref|ZP_02573212.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419371|gb|AAL19799.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329616|gb|EDZ16380.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246119|emb|CBG23922.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992623|gb|ACY87508.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157447|emb|CBW16936.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911888|dbj|BAJ35862.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226445|gb|EFX51496.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129170|gb|ADX16600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987795|gb|AEF06778.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 400 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 160 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|54310018|ref|YP_131038.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46914457|emb|CAG21236.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 391 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G +IAEN D +PASLTK++T+YV+ +K L +++S NA Sbjct: 41 YILMDYNSGKIIAENNSDEKLHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +T+ K +I++S ND A+AE + + FV+ MN +K +G+ Sbjct: 101 FPGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTGSFVELMNAWAKRIGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++HF+N HG+ H++TA DMA L+ + D P ++ K G N N Sbjct: 161 ESSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DGMKTG T +G+++VASA +G LI+V++G N R S LL+ GF Sbjct: 221 W--DKSLNVDGMKTGHTDQAGYSLVASAYEGKMRLISVVMGTKSANARKAESKKLLNYGF 278 >gi|291085651|ref|ZP_06353607.2| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291070535|gb|EFE08644.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 413 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/271 (36%), Positives = 142/271 (52%), Gaps = 21/271 (7%) Query: 11 AMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 A+L + P + AE P + L+D +G V+AE D +PASLTK+MT+YV Sbjct: 29 ALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 88 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--------DNALKLLIVKSA 116 V LK K L +T+ K+A + N + S M L + K +I++S Sbjct: 89 VGQALKAGKINLNDMVTVGKDA--WATGNPALRGSSVMFLKPGDQVAVSDLNKGVIIQSG 146 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 147 NDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFSTARDMALLGKA 206 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAI 233 + D P+ + K + PN N W+ T L DGMKTG T +G+N+VASA Sbjct: 207 LIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWS--TNLNVDGMKTGTTAGAGYNLVASAT 264 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 QGD LI+V+LGA R S LL+ GF Sbjct: 265 QGDMRLISVVLGAKTDRIRFNESEKLLTWGF 295 >gi|260450014|gb|ACX40436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] Length = 400 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRFRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|114707363|ref|ZP_01440260.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114537244|gb|EAU40371.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 299 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG + E+ D PASLTK+MT Y++F ++ + T +S+NA+ PPS Sbjct: 64 VVDFGTGRTLYEDQADELRYPASLTKMMTLYLLFEAVENGQLSRETQFIVSENAASKPPS 123 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G ++ + A+ L VKSAND+A +AE++ TE+ F M +++LG++ T F Sbjct: 124 KLGLKPGESIPVSLAMTALAVKSANDVATVVAENMAGTEEAFAAVMTRKARSLGMNHTQF 183 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ ++ARDMAIL I + +P Y F + G+ Y +TN +G G Sbjct: 184 ANASGLPNPQQVSSARDMAILGRAIMSRYPSYAQLFATPSYQYNGRTYNSTNKLLGKVAG 243 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DGMKTG+ +G ++VA+ + + LI V+LG R+ Sbjct: 244 VDGMKTGYINDAGSHLVATVRRNGRRLIVVVLGGDSSRKRD 284 >gi|330445965|ref|ZP_08309617.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490156|dbj|GAA04114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 391 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E + NPASLTKLMT+YV +K+ + IS+NA Sbjct: 41 YVLMDYNTGQVLVEKNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + L + + LI++S ND +VAIAE + +E+ FV MN+ +K LG+ Sbjct: 101 FPDSSKMFIEVGSEVPLMDLFRGLIIQSGNDASVAIAEHVAGSEQAFVGLMNSWAKKLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +++HF N HG+ YTT D+A+L + D P + K N N + Sbjct: 161 NSSHFANPHGLDHGDLYTTPYDIALLGQALIRDLPNIYPLYSEKSFTYNNITQRNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA +GD LIAV++G R S +LL+ GF Sbjct: 221 HDKSMNVDGMKTGYTSGAGYSLTSSATEGDMRLIAVVMGTKSTKIRESESKALLNYGF 278 >gi|254521328|ref|ZP_05133383.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14] gi|219718919|gb|EED37444.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14] Length = 406 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 11/242 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 57 WVLMDYATGQVLAGENVHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREG 116 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 117 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 176 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN N Sbjct: 177 GMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNL 236 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W G+ DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+ Sbjct: 237 LLWRDGSV---DGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNW 293 Query: 263 GF 264 GF Sbjct: 294 GF 295 >gi|89092035|ref|ZP_01164990.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92] gi|89083770|gb|EAR62987.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92] Length = 387 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 133/241 (55%), Gaps = 1/241 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++D +TG VIA D P+ PASLTK+MTAY++ L + L + IS+ A Sbjct: 41 YLVMDADTGKVIASKNADKPFAPASLTKMMTAYILEYELSKGNVGLEDLVLISEKAWRTQ 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + L + +K +I++S ND +VA+AE + +E F MN + LG+ T Sbjct: 101 GSRMFIREGTQVRLGDLMKGIIIQSGNDASVAVAEHIAGSEPAFADLMNQHADLLGMKNT 160 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F+NA G+ GH ++A D+A L+ I DFP + K + PN N + Sbjct: 161 NFLNATGLPADGHESSAADLATLAKAIINDFPDLYSIYSEKYFTYNDIRQPNRNKLLWRD 220 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTD 269 DGMKTG+T A+G+ +VASA + LI+V+LG D R + S LLS F Y +T Sbjct: 221 KTVDGMKTGYTDAAGYCLVASAKRDGMRLISVVLGTKDEEARARESQKLLSYAFRYYRTH 280 Query: 270 R 270 + Sbjct: 281 K 281 >gi|283850365|ref|ZP_06367654.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] gi|283574391|gb|EFC22362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] Length = 365 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 138/266 (51%), Gaps = 3/266 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTK 58 MR+ + ++ + L S ++ KLP + + +G V+ PD PAS+TK Sbjct: 1 MRRVIFLLMILCLVGPKTAFSARQSGKLPVKAAMVAEYGSGRVLFTQDPDKRIAPASVTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y+VF L +A L+ + +S+ A S + G +TLD ++ + V S ND Sbjct: 61 VMTMYLVFDALAAGRASLSDKVKVSRRADATGGSTMNLRAGEVVTLDELMRGMAVASGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AVAIAE +V MN ++ LG+++T F +G+ G TTARD+ L+ Sbjct: 121 AAVAIAEHFGGVPH-WVGMMNEKARELGMTSTTFKTPNGLPAPGQLTTARDLMKLATSYL 179 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +PQ + Y + G + NTN +G G DG+KTG+ +SG+NI+A+A +GD Sbjct: 180 RRYPQALRYHSTTEINHCGAVHGNTNRLLGVCEGVDGIKTGYVGSSGYNIIATAKRGDTR 239 Query: 239 LIAVILGALDRNTRNKVSASLLSMGF 264 +IAV+LG + RN + +L F Sbjct: 240 IIAVVLGGRTKQARNNATTRILDASF 265 >gi|222086064|ref|YP_002544596.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221723512|gb|ACM26668.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 504 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG+V+ D PASLTK+MT Y+ F L+ + L TP+ SKNA+ P+ Sbjct: 57 VIDANTGNVLYSENADTLHYPASLTKMMTVYLTFEALESGRITLDTPVVFSKNAAMQAPT 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G ++T+ A+ ++ KSAND A+A+ E L +E F + MN+ ++ LG++ T + Sbjct: 117 KLGIGTGRSVTVREAILGIVTKSANDAAMALGEMLGGSEDNFARMMNDKARMLGMTRTTY 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ TTARD A L ++ FPQY F + + P N +G+ G Sbjct: 177 RNPNGLPNTAQMTTARDQARLGIALREHFPQYYGLFSTTSFRLGNRVIPGHNHLLGSVRG 236 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 DG+KTG+T A+G+N+ S +S++ V+LG R+ Sbjct: 237 VDGIKTGYTRAAGYNLATSVKVDGRSIVGVVLGGASTPARD 277 >gi|218548358|ref|YP_002382149.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia fergusonii ATCC 35469] gi|218355899|emb|CAQ88514.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia fergusonii ATCC 35469] Length = 400 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ ++A + Sbjct: 42 WVLMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGRDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+LS + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLSKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLHVDGLKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|86356590|ref|YP_468482.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86280692|gb|ABC89755.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 419 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 4/243 (1%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++A + L +LD TG V+A D +PASLTK+MT Y+ F LK K Sbjct: 10 PLAALAGSASL----ILDARTGKVLASENADTLNHPASLTKMMTLYLTFEALKRGKIAWD 65 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L +E F + Sbjct: 66 TPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGFARM 125 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG+S T F+NA G+ TTARDM+ L + +FP F + +G Sbjct: 126 MTAKARQLGMSRTVFVNASGLPNSSQVTTARDMSTLGVALMKNFPNEYRLFSMASFNFRG 185 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K N + + G DG+KTG+T ASGFN+V++ G++ ++ V+LG +R+ Sbjct: 186 KTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDARME 245 Query: 258 SLL 260 +LL Sbjct: 246 ALL 248 >gi|315135488|dbj|BAJ42647.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli DH1] Length = 403 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRFRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|194735164|ref|YP_002113956.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195874051|ref|ZP_02700341.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197250312|ref|YP_002145817.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197300887|ref|ZP_02661864.2| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|198246085|ref|YP_002214828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205357020|ref|ZP_02344188.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358377|ref|ZP_02655826.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359776|ref|ZP_02831975.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194710666|gb|ACF89887.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630952|gb|EDX49538.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214015|gb|ACH51412.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290207|gb|EDY29564.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940601|gb|ACH77934.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324544|gb|EDZ12383.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334736|gb|EDZ21500.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343236|gb|EDZ30000.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 426 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 68 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDA--WA 125 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 126 TGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYA 185 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P + K + PN Sbjct: 186 KRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPN 245 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 246 RNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 303 Query: 260 LSMGF 264 L+ GF Sbjct: 304 LTWGF 308 >gi|116252402|ref|YP_768240.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115257050|emb|CAK08144.1| putative D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 291 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 127/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + D PASLTK+MT Y+ F L + + +T+S+NA P Sbjct: 33 VVDVQSGQVLEGSNQDDLNYPASLTKMMTLYLAFEALHDGRLNWDQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L TE+ F + M + + LG+ T F Sbjct: 93 KLAVGAGRKVTLREAVEGIVVLSANDAAVAIAEQLGGTEQVFAKAMTDKAHQLGMKDTVF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ TTARDMA L + DFP+ F ++G + +G K N + + G Sbjct: 153 RNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDG 212 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V SA++ + ++ V++G + R+ ASLL Sbjct: 213 VDGIKTGYTDASGYNVVTSALKDGRRVVGVVMGEKTASIRDDKMASLL 260 >gi|46581059|ref|YP_011867.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450480|gb|AAS97127.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234737|gb|ADP87591.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris RCH1] Length = 441 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 128/234 (54%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ V+ E D PASLTK+++ YV ++ KA L + IS A+ S Sbjct: 47 LIDQNSRRVLFEQNADAQIPPASLTKVISMYVALDHIRAGKASLADKVKISARAARTGGS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++LD L + V S ND +VA+AE + + +FVQ MN ++ LG++ T F Sbjct: 107 RMFLTRGETVSLDELLMGMAVSSGNDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTF 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ G TTARDM L+ T PQ + Y + + N N +G G Sbjct: 167 RNVNGLPAAGQKTTARDMGKLAVSYLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEG 226 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+ CASG+N++++ +G+ L+AV+LGA + R + L+ G+ + Sbjct: 227 ADGLKTGWVCASGYNLISTVKRGNTRLVAVVLGAENSQVRGQEMNRLIDAGYRS 280 >gi|167759038|ref|ZP_02431165.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704] gi|167663445|gb|EDS07575.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704] Length = 435 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 14/260 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG +I E D PAS+TK+MT ++F L K L ++ S+ A+ Sbjct: 83 PSAILMEASTGQIIYEKDADEQRPPASVTKIMTLLLIFDALDSGKISLKDEVSTSEYAAS 142 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D +K + V SAND VA+AE +C E++FV+ MN +K LG+ Sbjct: 143 MGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKQMNQRAKGLGME 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 THF+N +G+ GH TTARD+A++S + T +PQ Y I KG G Sbjct: 203 NTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIHDYSMIWMENITHTTKKGTTEFG- 261 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN V + A G+KTG T + + + A+A + LIAVI+ A D R + + Sbjct: 262 -LTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAKKDGMELIAVIMAAPDHKQRFTDATT 320 Query: 259 LLSMGF--YNKTDRKKINYI 276 LL+ GF NK + +K I Sbjct: 321 LLNYGFGKCNKYEEEKAKSI 340 >gi|120601649|ref|YP_966049.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris DP4] gi|120561878|gb|ABM27622.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Desulfovibrio vulgaris DP4] Length = 441 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 128/234 (54%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ V+ E D PASLTK+++ YV ++ KA L + IS A+ S Sbjct: 47 LIDQNSRRVLFEQNADAQIPPASLTKVISMYVALDHIRAGKASLADKVKISARAARTGGS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++LD L + V S ND +VA+AE + + +FVQ MN ++ LG++ T F Sbjct: 107 RMFLTRGETVSLDELLMGMAVSSGNDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTF 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ G TTARDM L+ T PQ + Y + + N N +G G Sbjct: 167 RNVNGLPAAGQKTTARDMGKLAVNYLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEG 226 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+ CASG+N++++ +G+ L+AV+LGA + R + L+ G+ + Sbjct: 227 ADGLKTGWVCASGYNLISTVKRGNTRLVAVVLGAENSQVRGQEMNRLIDAGYRS 280 >gi|241204910|ref|YP_002976006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858800|gb|ACS56467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 292 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 4/250 (1%) Query: 13 LSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 LS++F ++A+ + + ++D +G V+ + D PASLTK+MT Y+ F L Sbjct: 14 LSSVFLMGAFTLAQAGQASF--VVDVQSGQVLEGSNQDDLNYPASLTKMMTLYLAFEALH 71 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + + +T+S+NA P G +TL A++ ++V SAND AVAIAE L + Sbjct: 72 DGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAAVAIAEQLGGS 131 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E+ F + M + + LG+ T F N G+ TTARDMA L + DFP+ F + Sbjct: 132 EQVFAKAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSM 191 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 +G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++ V++G + Sbjct: 192 RGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMGEKTAS 251 Query: 251 TRNKVSASLL 260 R+ ASLL Sbjct: 252 IRDDKMASLL 261 >gi|190575883|ref|YP_001973728.1| putative penicillin-binding protein [Stenotrophomonas maltophilia K279a] gi|190013805|emb|CAQ47442.1| putative penicillin-binding protein precursor [Stenotrophomonas maltophilia K279a] Length = 404 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 11/242 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 55 WVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREG 114 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 115 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 174 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN N Sbjct: 175 GMKDSHFVNAHGLTAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNL 234 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W G+ DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+ Sbjct: 235 LLWRDGSV---DGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNW 291 Query: 263 GF 264 GF Sbjct: 292 GF 293 >gi|327189245|gb|EGE56423.1| putative serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 493 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 133/245 (54%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A+ P+ Sbjct: 26 VVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPT 85 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG++ T + Sbjct: 86 KLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGSEDRFGQMMTAKAHALGMTRTTY 145 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ G Sbjct: 146 RNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRG 205 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG+T A+GFN+V+S +S+++V+LG R+ +L++ + R Sbjct: 206 VDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGTSGPARDAQMRNLIATYLPKASSRGG 265 Query: 273 INYII 277 + +I Sbjct: 266 SSQLI 270 >gi|154253237|ref|YP_001414061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] gi|154157187|gb|ABS64404.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] Length = 558 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D PASLTK+MT Y++F L+ + L + IT++ + PPS Sbjct: 51 VIDAYSGKVLYARSADEYRYPASLTKVMTLYLLFEKLQAGEVTLKSRITMTPRGAGMPPS 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+++++A+ L+ +SAND+A A + TE F M ++ LG++ T + Sbjct: 111 KLGLRAGQTLSVEDAILALVTRSANDVASATGAFIAGTEDDFAALMTKKARALGMTRTTY 170 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 NA G+ TTARD A L+ RI+ DFPQY HYF + + N N +G + G Sbjct: 171 KNASGLPNSAQKTTARDQATLAKRIREDFPQYYHYFSTEYFAWGKARIRNHNRLLGEYKG 230 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G+KTG+T ASGFN+ A+ + ++ LI V++G R+ Sbjct: 231 TTGLKTGYTNASGFNLTATVERDNKFLIGVVMGGKQAKLRD 271 >gi|311107988|ref|YP_003980841.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8] gi|310762677|gb|ADP18126.1| D-alanyl-D-alanine carboxypeptidase DacC 1 [Achromobacter xylosoxidans A8] Length = 386 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 149/271 (54%), Gaps = 17/271 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +I+A A +S ++A+T P + LLD +G VIA + PASLTK+M Sbjct: 10 LIVAAACMSG-----AMAQTVPAPALSAKAWLLLDETSGQVIASHAATTRIEPASLTKIM 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSAND 118 TAYVVF L +K+ T +T+S A + P +S + GS +++D+ L+ L+++S ND Sbjct: 65 TAYVVFEALSKKELSATQLVTVSTRAWKVPAGSSKMFLEPGSKVSVDDLLRGLMIQSGND 124 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A+A+AE++ + + FV MN+T+ LGL AT F + HG+ Y+TA D++IL+ R Sbjct: 125 AAIALAEAVSGSVEAFVARMNDTAARLGLHATRFASPHGLPDPETYSTASDLSILATRFI 184 Query: 179 TDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--- 234 D+PQ Y Y K PN N + DG+KTG T ++G+ IVA+A + Sbjct: 185 RDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTESAGYCIVATAQRPNG 244 Query: 235 GDQ-SLIAVILGALDRNTRNKVSASLLSMGF 264 DQ LI V++G R + S LL GF Sbjct: 245 ADQRRLITVVVGTASDKLRTQESRELLEWGF 275 >gi|121603114|ref|YP_980443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Polaromonas naphthalenivorans CJ2] gi|120592083|gb|ABM35522.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Polaromonas naphthalenivorans CJ2] Length = 402 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 134/248 (54%), Gaps = 14/248 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++A D P PASLTKLMT Y+VF LK KK L +S+ A + P Sbjct: 44 YLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKITLQQTFGVSQRAWKMP 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ +K +IV+S ND +A+AE + T + FV+ MN +K LG+ +T Sbjct: 104 GSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAEHFVELMNQQAKALGMKST 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN-TNWAVGT 209 + N G+ + GH TTARD++ILS R+ +DFP Y+ Y IK G N TN Sbjct: 164 SYKNPEGLTEAGHITTARDLSILSTRLMSDFPDYIGYSAIKKYRYPGTPATNDTNRNTLL 223 Query: 210 FLG--ADGMKTGFTCASGFNIVASAIQ-----------GDQSLIAVILGALDRNTRNKVS 256 F DG+KTG T A+G+ ++A+A + G + L+A++LG + R S Sbjct: 224 FRDPTVDGLKTGHTNAAGYCMIATAKREFPNLGAAGKPGGRRLLAIVLGTTSDSARATES 283 Query: 257 ASLLSMGF 264 LL+ G+ Sbjct: 284 QKLLNWGY 291 >gi|153001830|ref|YP_001367511.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185] gi|160876563|ref|YP_001555879.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195] gi|151366448|gb|ABS09448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185] gi|160862085|gb|ABX50619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195] Length = 391 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G +IAE+ NPASLTK+MT+YV+ +K + +TISKNA Sbjct: 41 FVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 101 FSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F NAHG+ H +TA DMA+L + D P H + K G K N N Sbjct: 161 RDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G + R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278 >gi|238784923|ref|ZP_04628922.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] gi|238714138|gb|EEQ06151.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] Length = 401 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYNSGKVLAEANGDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T+FM HG+ G Y+TARDMA+L + D P+ + K + N N Sbjct: 163 LGLTNTNFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNMIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W T L DGMKTGFT +G N+VASA G LI+V+LGA R S LLS Sbjct: 223 RLLW--NTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLS 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|324112725|gb|EGC06701.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253] gi|325496781|gb|EGC94640.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia fergusonii ECD227] Length = 403 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ ++A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGRDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 103 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+LS + D P+ + K + PN Sbjct: 163 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLSKALIHDVPEEYAIHKEKEFTFNKIRQPN 222 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 223 RNRLLWS--SNLHVDGLKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 280 Query: 260 LSMGF 264 L+ GF Sbjct: 281 LTWGF 285 >gi|217972275|ref|YP_002357026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223] gi|217497410|gb|ACK45603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223] Length = 391 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G +IAE+ NPASLTK+MT+YV+ +K + +TISKNA Sbjct: 41 FVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 101 FSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F NAHG+ H +TA DMA+L + D P H + K G K N N Sbjct: 161 RDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G + R S LL+ GF Sbjct: 221 W--DNSMDVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278 >gi|91224062|ref|ZP_01259325.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] gi|91190973|gb|EAS77239.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] Length = 390 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E NPASLTKLMTAYV + L + IS+NA Sbjct: 41 YVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEINTGNITLNDEVVISRNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + LIV+S ND +VAIAE + +E FV MN+ + L L Sbjct: 101 FPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVAIAEYVAGSESGFVSLMNSWAAKLEL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S T F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 161 SNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SAIQGD LIAV++GA N R S LLS GF Sbjct: 221 RDRSMNVDGMKTGYTSGAGYSLATSAIQGDMRLIAVVMGAKSENVRESESKQLLSYGF 278 >gi|157370876|ref|YP_001478865.1| D-alanyl-D-alanine carboxypeptidase [Serratia proteamaculans 568] gi|157322640|gb|ABV41737.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 389 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG V+A+ D NPASLTKLMT V+ L + K L +T+ K+A + Sbjct: 40 YVLMDYTTGQVLAQENADQRRNPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDA--WA 97 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M T+ + + +I+ S ND VA+A+ + ++ FV+ MN S Sbjct: 98 QGNPVFKGSSLMFLKPGDRVTVRDLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKS 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +TTA D+A++S I P H + K L G N Sbjct: 158 AQLGLQNTHFETVHGLDAPGQFTTAGDLAVISRAIIMSEPAEYHMYSEKSLTWNGITQQN 217 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T ++GFNI+ASA +GD+ LIAV++G R + + L Sbjct: 218 RNGLLWD--KNLRVDGLKTGHTESAGFNIIASATEGDRRLIAVVMGGKSPKGREEQARKL 275 Query: 260 LSMGFYN 266 L+ G + Sbjct: 276 LTWGLRD 282 >gi|332282314|ref|ZP_08394727.1| penicillin-binding protein 6 [Shigella sp. D9] gi|332104666|gb|EGJ08012.1| penicillin-binding protein 6 [Shigella sp. D9] Length = 407 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 49 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 107 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 167 KKLGLINTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 227 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|290473971|ref|YP_003466845.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus bovienii SS-2004] gi|289173278|emb|CBJ80053.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus bovienii SS-2004] Length = 401 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G ++A + PD +PASLTK+MT+YVV +K K +T+ K+A + Sbjct: 43 YILMDYASGKILASHNPDERLDPASLTKVMTSYVVGQSIKSGKISTEDQVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MN S Sbjct: 101 TGNPALKGSSLMFLKPGDRVKVIDLNRGIVIQSGNDASIALADYVAGSQDAFVDLMNKYS 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y+TARDMA+LS + D P+ + K + PN Sbjct: 161 KTLGLENTHFKTVHGLDAAGQYSTARDMALLSQAMIRDVPEEYALNKEKEFTFNNIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +G+N+VASA +G LI+V+LGA R S + Sbjct: 221 RNRLLW--NQNMNVDGVKTGHTSGAGYNLVASAAEGSMRLISVVLGAPSDRMRFSDSEKI 278 Query: 260 LSMGF 264 LS GF Sbjct: 279 LSWGF 283 >gi|256021090|ref|ZP_05434955.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella sp. D9] Length = 400 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLINTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|291541617|emb|CBL14727.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63] Length = 382 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 9/274 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 +R+ V I + + + PF+ + A++ P L++++TG V+ E P A Sbjct: 2 LRKAFVSITLCAVFLLLPFVGLKVNALSADSISAPSAVLMESSTGKVLFEKNPHEQRPCA 61 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT +VF + K L IT S++A+ S+ +KG TM+ D+ +K +V Sbjct: 62 SVTKIMTLLLVFEAVDSGKLSLDDEITASEHAAGMGGSDIWLEKGETMSADDMIKATVVV 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND AVA+AE + E FV+ MN+ +K LG++ T F N +G+ + GH T+A D+A++S Sbjct: 122 SANDAAVALAEHISGGEDAFVEKMNSRAKELGMNDTVFKNCNGLDEEGHITSAYDVALMS 181 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + T + Y I ++G K NTN + T+ G G+KTG T +G + A+A Sbjct: 182 REL-TKHEKIFDYTSIWLDNLRGGKTQIVNTNKLLKTYNGITGLKTGTTNDAGCCMSATA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +GD SLI+V+LG R +A+LL GF N Sbjct: 241 TRGDVSLISVVLGCKTGKERFADAAALLDYGFAN 274 >gi|167625150|ref|YP_001675444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis HAW-EB4] gi|167355172|gb|ABZ77785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis HAW-EB4] Length = 390 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG +IAE NPASLTK+MT+YV+ +K T +TISK A Sbjct: 40 YVLMDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNVSPTDEVTISKKAWSKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +T++ K +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 100 FPDSSKMFIEVGKKVTVEELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H +TA DMAIL I D P ++ K G K N N Sbjct: 160 QDSYFENSHGLDSDNHKSTAYDMAILGAAIIRDVPDEYAVYKEKSFTYNGIKQYNRNGLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+V SA + LI+V++G R S LL+ GF Sbjct: 220 W--DKSLSVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSEAARKAESKKLLNYGF 277 >gi|74316284|ref|YP_314024.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus denitrificans ATCC 25259] gi|74055779|gb|AAZ96219.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus denitrificans ATCC 25259] Length = 377 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 27/297 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G +A + PD P PASLT+LMT YV+ ++ L + + A+E Sbjct: 34 WVIVDQTSGRELASHQPDLPLAPASLTQLMTVYVLLGDIRRNALRLDAEVRVPDAAAEAD 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + K G + +D L+ ++V+SA+D V +A + +E FV+ MN + LG+ T Sbjct: 94 GARVFLKPGERVRVDTLLRAILVQSASDATVTLATATDGSEAAFVERMNREAARLGMKRT 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 HF NA G+ Q GH ++ARD+A+L + + P F K + G Y N N W Sbjct: 154 HFANATGLAQPGHVSSARDLAVLGRALLREHPAQQALFAQKEFTLDGLTYYNANRLLWRD 213 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--- 264 GT G+K G SG++ VASA +G+Q +AV+LGA R + + LL+ GF Sbjct: 214 GTV---TGLKVGRNPESGYSAVASAQRGEQRRVAVVLGARSDAQRTQDALRLLNYGFEKF 270 Query: 265 -----YNKTDRKKINYIIK------------DFYQQNLSNEVPNISEEVCTTQKEII 304 Y K+ + + DF+ +P + E+ TQ+ I+ Sbjct: 271 DSVLLYRARQPVKVVRLYRGTRQSVGIGFEQDFHLLAPRGSLPRVKAEIV-TQRPIV 326 >gi|317047508|ref|YP_004115156.1| beta-lactamase [Pantoea sp. At-9b] gi|316949125|gb|ADU68600.1| Beta-lactamase [Pantoea sp. At-9b] Length = 401 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AE D +PASLTK+MT+YV+ LK K +TI ++A + Sbjct: 43 WVLMDYNSGKVLAEANADQRLDPASLTKMMTSYVIGQALKAGKIHDDDMVTIGQDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND +A+A+ + ++ F+ MNN + Sbjct: 101 TGNPKLKGSSLMFLKPGDRIPVAELNKGIVIQSGNDACIAMADYVAGSQDSFIGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K GL THFM HG+ G Y+TARDMAI+ R+ +D P+ + K K N Sbjct: 161 KAFGLQNTHFMTVHGLDADGQYSTARDMAIIGQRLISDVPEEYALNKQKEFTFNNIKQMN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G N+V+SA GD LI+V+LGA R + S L Sbjct: 221 RNRLLWS--SNLKVDGIKTGHTSGAGNNLVSSATDGDMRLISVVLGAETDALRFRESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|30249456|ref|NP_841526.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC 19718] gi|30138819|emb|CAD85396.1| D-alanyl-D-alanine carboxypeptidase 1 (S11) family [Nitrosomonas europaea ATCC 19718] Length = 385 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 148/268 (55%), Gaps = 8/268 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+QF I ++ +L+ I P S +A K + L+D ++ +A + P +PASL Sbjct: 13 MKQF--IFSLFLLATISPAWSQQPELAVAAK--SFILIDFHSSQTLASSNPHERLDPASL 68 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TKLMTAYVVFS L++++ + + +S + S + +T+D + +IV+S Sbjct: 69 TKLMTAYVVFSALQQERIKIDQVVPVSNRSWRMVGSRMFIEPNKQVTVDELIHGVIVQSG 128 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VA+AE + +E FV MN +K LG+ THF N+ G+ HY+TA D+A+L+ Sbjct: 129 NDACVALAELIAGSEDLFVHMMNEEAKRLGMHNTHFTNSTGLTHSDHYSTAHDLALLAAA 188 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I DFP+ + ++ G N N + T DGMKTG+T A+G+ +V SA + Sbjct: 189 IIRDFPERYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDQ 248 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 + LI+V++G N R+ S LL+ GF Sbjct: 249 RRLISVVMGTASPNARSIESQRLLNYGF 276 >gi|304410306|ref|ZP_07391925.1| Beta-lactamase [Shewanella baltica OS183] gi|307301983|ref|ZP_07581741.1| Beta-lactamase [Shewanella baltica BA175] gi|304351715|gb|EFM16114.1| Beta-lactamase [Shewanella baltica OS183] gi|306914021|gb|EFN44442.1| Beta-lactamase [Shewanella baltica BA175] gi|315268757|gb|ADT95610.1| Beta-lactamase [Shewanella baltica OS678] Length = 425 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G +IAE+ NPASLTK+MT+YV+ +K + +TISKNA Sbjct: 75 FVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKN 134 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 135 FSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 194 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F NAHG+ H +TA DMA+L + D P H + K G K N N Sbjct: 195 RDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLL 254 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G + R S LL+ GF Sbjct: 255 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 312 >gi|322513157|ref|ZP_08066289.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC 25976] gi|322121089|gb|EFX92912.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC 25976] Length = 392 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G+V+A PD PASLTK+MT+YVV LK+ K + +T+++N A + Sbjct: 40 YILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++++ ++ LI+ S ND AVA+AE +++ F+ MN ++ GL Sbjct: 100 FPGSSLMFLDLNTQVSVEDLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFAQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 THF HG+ + Y++ARDMAI+ I D P+ + K + KK PN N Sbjct: 160 KNTHFTTVHGLDEPNQYSSARDMAIIGAHIIRDQPEEYKIYAEKEFKYNIKKPQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 220 LW--DKTMNVDGMKTGHTSQAGYNLVASATNSNTRLISVVMGVGTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|285017609|ref|YP_003375320.1| D-alanyl-D-alanine carboxypeptidase [Xanthomonas albilineans GPE PC73] gi|283472827|emb|CBA15332.1| probable d-alanyl-d-alanine carboxypeptidase protein [Xanthomonas albilineans] Length = 402 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 134/239 (56%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D +G V+A PAS+TK+MT+YVV + LK+ K + +S+ A Sbjct: 53 WVLMDYASGQVLAGENEHLRVAPASITKVMTSYVVAAELKQGKIKRDDQVMLSERAWREG 112 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + V+S ND A+A+AE +E+ F MNN + + Sbjct: 113 GAGTDGSYSGFPVNQTARLEDMEKGMAVQSGNDAAIALAEHTAGSEEAFANLMNNYAAKI 172 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ +HF+NAHG+ GHYTTA D+A+L + D+P+ Y +I+ + PN N Sbjct: 173 GMTGSHFVNAHGLSAEGHYTTAYDLALLGRAMVRDYPETYAYNKIREFRVGDITQPNRNL 232 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R + S +LL+ GF Sbjct: 233 LLWRDPSVDGIKTGHTSEAGYCLLSSAQRGDQRLIAVVMGDSSEKQRAEDSLALLNWGF 291 >gi|165933122|ref|YP_001649911.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia rickettsii str. Iowa] gi|165908209|gb|ABY72505.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia rickettsii str. Iowa] Length = 306 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S A++ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARD+A L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAESRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|77359968|ref|YP_339543.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas haloplanktis TAC125] gi|76874879|emb|CAI86100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas haloplanktis TAC125] Length = 387 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG VIA+ D PASLTK+MT+YV+ + +K T +T+S+ A Sbjct: 40 YFLVDFTTGKVIAQGEADTKLAPASLTKMMTSYVIGTEVKAGNIAPTDMVTVSEKAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++D+ +I++S ND VA+AE + +E F MN + LG+ Sbjct: 100 FPESSKMFIEVGKQISVDDLNHGIIIQSGNDACVAMAEHIAGSESAFADLMNAHAAKLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 S THF+N+HG+ HYTT RDMA L + D P ++ K G K N N Sbjct: 160 SNTHFINSHGLDTDAHYTTPRDMATLGGALIRDVPDEYALYKKKSFTYNGIKQYNRNSLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V SA + D LIAV++G R + S LL+ GF Sbjct: 220 W--DESLDVDGIKTGHTSDAGYSLVTSATKNDMRLIAVVMGTSSERARKEESKKLLNYGF 277 >gi|332091086|gb|EGI96176.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 155-74] Length = 400 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DG+KTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--SNLNVDGIKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|160872568|ref|ZP_02062700.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Rickettsiella grylli] gi|159121367|gb|EDP46705.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Rickettsiella grylli] Length = 397 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 135/256 (52%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F IA Y L+D +G ++A D PASLTK+MT+YVV L++ + LT Sbjct: 41 FTPIAPNVNAKAYLLMDAYSGKILASKNIDEHLAPASLTKMMTSYVVSMALQQGRIHLTD 100 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + IS+ A + S K G +++ + ++ +IV S ND VA+AE + +++ FV M Sbjct: 101 LVPISEAAWKTGGSKMFVKVGDKVSVQDLMQGMIVDSGNDACVAMAEYIAGSQESFVNLM 160 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + LG+ THF++ G+ HYTTARDM+IL+ + DFP+ ++ K G Sbjct: 161 NQQAARLGMKNTHFVDVDGLPDPNHYTTARDMSILARALILDFPEDYKWYSQKWFSYNGI 220 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K PN N + DG+KTG T +GF + AS + LI +++GA R + S Sbjct: 221 KQPNRNRLLWRNPDVDGIKTGHTNEAGFCLAASGQKNGLRLITIVMGAPSDEVRAQDSQK 280 Query: 259 LLSMGFYNKTDRKKIN 274 LL+ GF RK N Sbjct: 281 LLTYGFRFFESRKLYN 296 >gi|107103514|ref|ZP_01367432.1| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2] Length = 359 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 129/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ EN D PASLTKLMTAY+ ++ + +T+S++A Sbjct: 13 YVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTG 72 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ + L +I++S ND +VA+AE + +E F MN T++ LGL+ + Sbjct: 73 GSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNS 132 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFM+A G+ HY++ARDMA+L+ I P + + K K PN N + Sbjct: 133 HFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRD 192 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q +IAV+ G R + LL+ GF Sbjct: 193 KTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKLLTYGF 246 >gi|188533505|ref|YP_001907302.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] gi|188028547|emb|CAO96409.1| Penicillin-binding protein 6B precursor (D-alanyl-D-alanine carboxypeptidase) [Erwinia tasmaniensis Et1/99] Length = 383 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 128/244 (52%), Gaps = 15/244 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ PD NPASLTKLMT YVV + +K+ +T+ K+A + Sbjct: 34 WVLMDATTGQILTSGQPDERRNPASLTKLMTGYVVDRAIDQKRITRDDVVTVGKDA--WA 91 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L K+ +I+ S ND VA+A+ + ++ FV MN+ Sbjct: 92 AGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGNDACVALADYVAGSQNNFVSMMNHYV 151 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGLS THF HG+ G +TTARD+A LS I + P + + K L G N Sbjct: 152 EKLGLSNTHFETVHGLDAPGQFTTARDLATLSRAIISGEPDFYQMYSEKSLTWNGITQQN 211 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T ++GFNI+AS++ G + LIAV++G R + + L Sbjct: 212 RNGLLWD--KELHVDGLKTGHTESAGFNIIASSLDGQRRLIAVVMGGKSPKGREEQARQL 269 Query: 260 LSMG 263 L G Sbjct: 270 LLWG 273 >gi|157828411|ref|YP_001494653.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800892|gb|ABV76145.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 306 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ T K P T ++D +G V+ + PASLTKLMT Y++F ++ K L Sbjct: 26 AVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDK 85 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S A++ PP K G T+T+ A+ LI+KSAND AV +AE + +EK F M Sbjct: 86 KLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLM 145 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ T+F NA G TTARD+A L+ +K D+P++ F +G Sbjct: 146 NVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKFYPLFAKTSFVFRGN 205 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + GA+GMKTGF +G+N+V +A + +SLIAV+ G +R++ Sbjct: 206 VVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAESRDQKMMG 265 Query: 259 LLSMGF 264 LL F Sbjct: 266 LLDQHF 271 >gi|320177827|gb|EFW52813.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] gi|332088903|gb|EGI94015.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82] Length = 400 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DG+KTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--SNLNVDGIKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 Query: 262 MGF 264 GF Sbjct: 280 WGF 282 >gi|261821229|ref|YP_003259335.1| beta-lactamase [Pectobacterium wasabiae WPP163] gi|261605242|gb|ACX87728.1| Beta-lactamase [Pectobacterium wasabiae WPP163] Length = 401 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 141/263 (53%), Gaps = 20/263 (7%) Query: 18 PFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 PF S + +P + L+D +G V+AE+ D +PASLTK+M +YV+ +K Sbjct: 25 PFTSAEQLPAVPQIDAKAFILMDHASGKVLAESNADERLDPASLTKIMASYVIGQAIKSG 84 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIA 124 K T +T+ K+A + N + S M L ++ ++++S ND ++A+A Sbjct: 85 KIRPTDEVTVGKDA--WATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALA 142 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 + + ++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L + D P+ Sbjct: 143 DYVAGSQDAFVSLMNNYAKALNLTNTHFLTVHGLDAAGQYSTARDMALLGQALIRDVPEE 202 Query: 185 MHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + K + PN N W+ T L DG+KTG T +G N+VASA +G+ LI+ Sbjct: 203 YALHKEKEFTFNNIRQPNRNRLLWS--TNLNVDGVKTGHTNGAGHNLVASATEGNMRLIS 260 Query: 242 VILGALDRNTRNKVSASLLSMGF 264 V+LGA R + S LL+ GF Sbjct: 261 VVLGAQTDAIRFRESEKLLTWGF 283 >gi|152984820|ref|YP_001346496.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7] gi|150959978|gb|ABR82003.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7] Length = 386 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 144/273 (52%), Gaps = 4/273 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ EN D PASLTKLMTAY+ ++ + +T+S++A Sbjct: 40 YVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ + L +I++S ND +VA+AE + +E F MN T++ LGL+ + Sbjct: 100 GSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFM+A G+ HY++ARDMA+L+ I P + + K K PN N + Sbjct: 160 HFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG T +G+ +VASA++ Q +IAV+ G R + LL+ GF R Sbjct: 220 KTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKLLTYGFRFFESR 279 Query: 271 ---KKINYIIKDFYQQNLSNEV-PNISEEVCTT 299 KK + K + +EV ++E++ T Sbjct: 280 NFYKKGTELTKGLVWKGSEHEVKAGLAEDLTMT 312 >gi|194433152|ref|ZP_03065434.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae 1012] gi|194418649|gb|EDX34736.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae 1012] Length = 403 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 136/243 (55%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 45 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATG 104 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 105 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 164 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 165 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 224 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DG+KTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 225 RLLWS--SNLNVDGIKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282 Query: 262 MGF 264 GF Sbjct: 283 WGF 285 >gi|329893664|ref|ZP_08269798.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC3088] gi|328923591|gb|EGG30903.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC3088] Length = 389 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 11/240 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG+VIAE+ + PASLTKLMT+YV+ ++ + + IS+NA Sbjct: 35 LIDATTGYVIAESNANEQLPPASLTKLMTSYVLSYEIERGRVAFDDKVLISENAWA---Q 91 Query: 93 NSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N FK S M L+ +++ +++ S ND VAIAE L E F MN ++ Sbjct: 92 NPIFKGSSLMWLEPGMEVSISDLEKGIVISSGNDATVAIAEHLAGNETAFADMMNTHAQR 151 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG++ ++F N+HG+ H TTA D+A+L+ I DFP + + + K N N Sbjct: 152 LGMNDSYFENSHGLPSPNHLTTAHDLALLAKAIIQDFPTHYQIYAERDYTFNNIKQYNRN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G DG+KTG+T +G+ +V+SA +GD LI+V+LG TR + SLL+ GF Sbjct: 212 TLLGEDPSVDGLKTGYTSEAGYGLVSSAKRGDMRLISVVLGTSSAKTRASETRSLLNYGF 271 >gi|284009241|emb|CBA76342.1| penicillin-binding protein [Arsenophonus nasoniae] Length = 418 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+AE D +PASLTK+MT+Y++ +K K + +TI +NA + Sbjct: 64 YILIDYYSGKVLAERNADQRRDPASLTKMMTSYIIGQTIKAGKISMNDIVTIDENA--WA 121 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+AE + E FV+ MN+ Sbjct: 122 TGNPVFKGSSLMFLKPGDRVSVSQLIRGINLQSGNDACVAMAEYVAGDEASFVKLMNDNV 181 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF+ HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 182 QRLGLKNTHFLTVHGLDADGQYSSARDMALIGQALIRDVPEEYAIYKEKEFTFNKIRQLN 241 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T A+G+N+VASA +G+ LI+VILG R+ S LL+ Sbjct: 242 RNGLLWDKSLNVDGIKTGHTSAAGYNLVASATEGNMRLISVILGGHSSKGRDAESKKLLT 301 Query: 262 MGF 264 GF Sbjct: 302 WGF 304 >gi|254483505|ref|ZP_05096732.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma proteobacterium HTCC2148] gi|214036226|gb|EEB76906.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma proteobacterium HTCC2148] Length = 387 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 139/239 (58%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++AE D P PASLTK+MT+YV+ + + E + L+ +T+S+NA Sbjct: 34 YLLVDANSGEILAEKNADMPLPPASLTKMMTSYVLATEIDEGRVALSDMVTVSENAWSQN 93 Query: 91 P--SNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P + S+ + G +++D+ + +++ S ND VA+AE L +E F + MN+ ++ L Sbjct: 94 PLFAGSSLMWIEPGKEVSIDDLQRGIVISSGNDATVAVAEHLAGSEAVFAEMMNSHAEKL 153 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ T+++N+HG+ H TTARD+A LS + + P++ ++ + K N N Sbjct: 154 GMIDTYYVNSHGLPDPDHVTTARDLATLSKAMIIEHPEHYAVYKEREFTYNNIKQYNRNS 213 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG+T +G+ +VASA + LI+V+LGA R + SLL+ GF Sbjct: 214 LLAEDPTVDGLKTGYTQEAGYCLVASAERRGMRLISVVLGASSTRARKNETRSLLNYGF 272 >gi|15599194|ref|NP_252688.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1] gi|116052037|ref|YP_789120.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889720|ref|YP_002438584.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58] gi|254236891|ref|ZP_04930214.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719] gi|254242683|ref|ZP_04936005.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192] gi|296387449|ref|ZP_06876948.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAb1] gi|313109439|ref|ZP_07795399.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016] gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa PAO1] gi|9950191|gb|AAG07386.1|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1] gi|115587258|gb|ABJ13273.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|126168822|gb|EAZ54333.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719] gi|126196061|gb|EAZ60124.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192] gi|218769943|emb|CAW25704.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58] gi|310881901|gb|EFQ40495.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016] Length = 386 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 129/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ EN D PASLTKLMTAY+ ++ + +T+S++A Sbjct: 40 YVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ + L +I++S ND +VA+AE + +E F MN T++ LGL+ + Sbjct: 100 GSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFM+A G+ HY++ARDMA+L+ I P + + K K PN N + Sbjct: 160 HFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q +IAV+ G R + LL+ GF Sbjct: 220 KTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKLLTYGF 273 >gi|227329429|ref|ZP_03833453.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 401 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 145/273 (53%), Gaps = 20/273 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L + PF + +P Y L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YV+ +K K T +T+ K+A + N + S M L ++ ++++ Sbjct: 75 YVIGQAIKSGKIRPTDEVTVGKDA--WATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQ 132 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++A+A+ + ++ FV MNN +K L L+ T+F+ HG+ G Y+TARDMA+L Sbjct: 133 SGNDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFLTVHGLDAPGQYSTARDMALLG 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ T L DG+KTG T +G N+VAS Sbjct: 193 QALIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWS--TNLNVDGVKTGHTNGAGHNLVAS 250 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A +G+ LI+V+LGA R + S LL+ GF Sbjct: 251 ATEGNMRLISVVLGAQTDAIRFRESEKLLTWGF 283 >gi|90022977|ref|YP_528804.1| penicillin-binding protein 6 [Saccharophagus degradans 2-40] gi|89952577|gb|ABD82592.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Saccharophagus degradans 2-40] Length = 393 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 146/280 (52%), Gaps = 15/280 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 MR F+V + + +F I Y L+D +TG VI E+ D PASLT Sbjct: 5 MRSFVVCLLATICVPVFAAQVIVPAPPELSAKAYLLIDADTGKVIVESNADEVMEPASLT 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD--------NALK 109 K+MT+Y+V ++ + + +S +A S S STM LD + L+ Sbjct: 65 KMMTSYIVSEEIESGRLTEDALVLVSDDAWRRGGSAS---GSSTMFLDPRSEVRVIDLLR 121 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +I++S ND ++A+A+ + E F MN ++ LG+++T+F NA G GH TTARD Sbjct: 122 GVIIQSGNDASIALAQHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTARD 181 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +AIL+ + D P++ + K + G PN N + DGMKTG T ++G+ +V Sbjct: 182 LAILARALVNDHPEHYALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCLV 241 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKT 268 ASA Q D LI+V+LG + R + S LLS GF Y KT Sbjct: 242 ASAKQDDMRLISVVLGTKSDSARTQDSQKLLSYGFRYYKT 281 >gi|126175479|ref|YP_001051628.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS155] gi|125998684|gb|ABN62759.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella baltica OS155] Length = 391 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G +IAE+ NPASLTK+MT+YV+ +K + +TISKNA Sbjct: 41 FVLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 101 FSDSSKMFIEVGTTVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F NAHG+ H +TA DMA+L + D P H + K G K N N Sbjct: 161 RDSYFENAHGLDAENHKSTAYDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G + R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278 >gi|315181925|gb|ADT88838.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218] Length = 390 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E+ + NPASLTKLMT+YV +K T +TIS+ A Sbjct: 40 YVLMDYNTGQVLVEHNANEKMNPASLTKLMTSYVAGQEMKRGNIKPTDQVTISQKAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+++ + + + LIV+S ND +VAIAE + +E FV MN+ ++ LGL Sbjct: 100 FPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAQRLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N HG+ G YTT D+A L+ I D P+ + G N N + Sbjct: 160 NNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIRDLPEIYPIYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTGFT +G+++V SA G+ LI+ ++GA +R S LLS GF Sbjct: 220 RDRSMNVDGMKTGFTSGAGYSLVTSATNGNMRLISAVMGANSMKSRESDSKQLLSYGF 277 >gi|292490707|ref|YP_003526146.1| beta-lactamase [Nitrosococcus halophilus Nc4] gi|291579302|gb|ADE13759.1| Beta-lactamase [Nitrosococcus halophilus Nc4] Length = 382 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 132/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D TG V+AE D PAS+TKLMTAYVVF+ LK L + IS+ A Sbjct: 40 YILQDFATGQVLAEAQADQRVEPASITKLMTAYVVFAELKRGNIHLEDKVLISEKAWRTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + S ++++ L+ +I++S ND +VA+AE + TE+ F MN ++ LG++ + Sbjct: 100 GSRTFIEVDSRVSVETLLQGMIIQSGNDASVALAEYVGGTEEIFATLMNQQAQALGMTGS 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N+ G+ HY T RD+A L+ + DFP+Y ++ + N N + Sbjct: 160 HFVNSTGLPHENHYMTTRDIATLARALIRDFPEYYGWYSEQEFTYNNITQYNRNVLLRRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG KTG+T A+G+ +V+SA++ LIAV++G R + S +LL+ GF Sbjct: 220 PSVDGCKTGYTEAAGYCLVSSAMREGMRLIAVVMGTKGPKIRARESLALLNYGF 273 >gi|116751475|ref|YP_848162.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Syntrophobacter fumaroxidans MPOB] gi|116700539|gb|ABK19727.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Syntrophobacter fumaroxidans MPOB] Length = 462 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 129/232 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G V+ E D PAS+TK++T Y+VF ++E + L + IS A++ S Sbjct: 38 VVDMSNGVVLYEKNADDLIAPASITKVLTLYIVFDAIREGRIRLDDRVEISSRAAKTTGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G+ ++L+ +K + V S ND VA+AE + + FV+ MN ++ LG++++ F Sbjct: 98 RMGVKAGTRVSLEELIKGMAVVSGNDACVAVAEHISGNVEAFVRKMNAKARELGMNSSRF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 M +G+ G TTARD+A LS FP + ++ + N N + T G Sbjct: 158 MTPNGLPAKGQLTTARDIARLSIAYLRRFPDSLTIHSMQAYSYGTSSHHNANRLLATCPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTGF CASG+NI A+A +G+ ++AV+LGA R + + LL GF Sbjct: 218 VDGLKTGFVCASGYNITATARRGNTRILAVVLGAPTPGVRLRETTKLLEAGF 269 >gi|260769394|ref|ZP_05878327.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972] gi|260614732|gb|EEX39918.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972] Length = 390 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D NTG V+ E+ + NPASLTKLMT+YV +K T +TIS+ A Sbjct: 40 YVLMDYNTGQVLVEHNANEKMNPASLTKLMTSYVAGQEMKRGNIKPTDQVTISQKAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+++ + + + LIV+S ND +VAIAE + +E FV MN+ ++ LGL Sbjct: 100 FPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAQRLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N HG+ G YTT D+A L+ I D P+ + G N N + Sbjct: 160 NNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIRDLPEIYPIYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTGFT +G+++V SA G+ LI+ ++GA +R S LLS GF Sbjct: 220 RDRSMNVDGMKTGFTSGAGYSLVTSATNGNMRLISAVMGANSMKSRESDSKQLLSYGF 277 >gi|227356744|ref|ZP_03841129.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906] gi|227163034|gb|EEI47969.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906] Length = 400 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++A P+ +PASLTK+M++YVV +KE + + + +NA + Sbjct: 42 YVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVGQAIKEGRMSPDDIVIVGRNA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+AE + +++ FV MN + Sbjct: 100 TGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDASIALAEHVAGSQETFVDLMNTYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 NLGL THF HG+ G YTTA+DMA+L+ + D P + K + PN Sbjct: 160 ANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYDIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +G+N+V+SA +G+ LIAV+LGA R S L Sbjct: 220 RNRLLW--NKNMNVDGVKTGHTNGAGYNLVSSATEGNMRLIAVVLGAPSDKVRFAESERL 277 Query: 260 LSMGF 264 L GF Sbjct: 278 LGWGF 282 >gi|75675891|ref|YP_318312.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74420761|gb|ABA04960.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 587 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 10/261 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF SI ++D N+G ++ PD +PASLTK+MT Y++F L + L Sbjct: 55 PFASI----------VVDANSGATLSSTSPDSLRHPASLTKMMTLYMLFERLDAGRIGLD 104 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + +S A+ P+ + G T+ +++A+K L+ KSAND AV IAE++ E F + Sbjct: 105 SEMRVSARAAAQNPTKLGLRPGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARM 164 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG++ T + NA G+ TTARD A L ++ FP+Y YF +G Sbjct: 165 MTRKARALGMTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRG 224 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N VG+ G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ Sbjct: 225 RTIRGHNRLVGSVDGVDGIKTGYIRASGFNLVTNLKRGNRHLVGVVLGGRSGGSRDATMR 284 Query: 258 SLLSMGFYNKTDRKKINYIIK 278 LL+ R+ + I + Sbjct: 285 KLLAENLDKAATRRTVAAIAE 305 >gi|288962599|ref|YP_003452893.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288914865|dbj|BAI76349.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 451 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 126/228 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ + P+S+TK+MTAY+ + L + L T IS+ A + S Sbjct: 111 LVDLSSGAVLLDKNGAERMAPSSMTKMMTAYLTYDALVHGRTTLDTSFPISQTAWKMGGS 170 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GST+ +++ L+ L++ S ND AVA+AE L +E F MN ++ LG++ +HF Sbjct: 171 RMFLKLGSTVRVEDLLRGLLIDSGNDAAVALAEGLAGSESAFAGLMNAKARELGMADSHF 230 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 MNA G GHYTTARD+AIL+ R+ DFPQ+ HY + G + N N + + Sbjct: 231 MNASGWPDPGHYTTARDLAILATRLIRDFPQFYHYESERNFTWNGIRQGNRNPLLYHPVS 290 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T G+ + AS + + L+ V+ G +RN LL Sbjct: 291 VDGIKTGHTEVGGYGLTASGERNGRRLVLVVNGLPSPQSRNDEPTRLL 338 >gi|262274734|ref|ZP_06052545.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886] gi|262221297|gb|EEY72611.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886] Length = 347 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 4/235 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D N+G ++AEN NPASLTK+MT+YV+ ++ L + ISKNA +P Sbjct: 1 MDYNSGKILAENNAYERLNPASLTKMMTSYVIGQEIERGNISLDDDVVISKNAWAKNFPG 60 Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G+T+ +++ + +I++S ND VA+AE + +E FV MN +K LG++ T Sbjct: 61 SSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDSFVDLMNGWAKTLGMNNT 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GT 209 F N+HG+ G Y+T DMA+L + D P+ + K G N N + Sbjct: 121 KFSNSHGLDDDGLYSTPYDMALLGQALIRDVPEEYRIYNEKSFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+++V+SA +GD LIAV++G N R S LL+ GF Sbjct: 181 SMNVDGIKTGHTEKAGYSLVSSATEGDMRLIAVVMGTESANARKAESKKLLNYGF 235 >gi|197284564|ref|YP_002150436.1| penicillin-binding protein [Proteus mirabilis HI4320] gi|194682051|emb|CAR41559.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Proteus mirabilis HI4320] Length = 400 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++A P+ +PASLTK+M++YVV +KE + + + +NA + Sbjct: 42 YVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVGQAIKEGRMSPDDIVIVGRNA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+AE + +++ FV MN + Sbjct: 100 TGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDASIALAEHVAGSQETFVDLMNTYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 NLGL THF HG+ G YTTA+DMA+L+ + D P + K + PN Sbjct: 160 ANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYDIHKEKEFTFNNIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +G+N+V+SA +G+ LIAV+LGA R S L Sbjct: 220 RNRLLW--NKNMNVDGVKTGHTNGAGYNLVSSATEGNMRLIAVVLGAPSDKVRFAESERL 277 Query: 260 LSMGF 264 L GF Sbjct: 278 LGWGF 282 >gi|227112044|ref|ZP_03825700.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 401 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 20/273 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L + PF + +P Y L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVK 114 YV+ +K K T +T+ K+A + N + S M L ++ ++++ Sbjct: 75 YVIGQAIKSGKIRPTDEVTVGKDA--WATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQ 132 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++A+A+ + ++ FV MNN +K L L+ T+F HG+ G Y+TARDMA+L Sbjct: 133 SGNDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFRTVHGLDAPGQYSTARDMALLG 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + D P+ + K + PN N W+ T L DG+KTG T +G N+VAS Sbjct: 193 QALIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWS--TNLNVDGVKTGHTSGAGHNLVAS 250 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A +G+ LI+V+LGA R + S LL+ GF Sbjct: 251 ATEGNMRLISVVLGAQTDAIRFRESEKLLTWGF 283 >gi|257439156|ref|ZP_05614911.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257198407|gb|EEU96691.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 412 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 128/236 (54%), Gaps = 2/236 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E PD AS+TKLMT + F ++ K L TP+ +S++A S Sbjct: 68 LMEPETGRVLYEKAPDERMPIASITKLMTLLLTFEAIRGGKLTLDTPVPVSEHAYHMGGS 127 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TLD L+ + V SAND AVA+AE + +E FV+ MN + LG++ T F Sbjct: 128 QIWLEPGEQFTLDEMLRAICVSSANDAAVAVAELVGGSEPVFVEQMNARAAELGMTNTTF 187 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWAVGTF 210 NA G+ GH +TARD+AILS + P+ +HY I L + NTN + + Sbjct: 188 RNACGLDTEGHLSTARDVAILSRYLLNTCPELLHYTGIWTDSLRNGQTQLVNTNKLLRRY 247 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T +G I ASA + +LIAV+LG+ R + +LL GF N Sbjct: 248 SGITGLKTGTTSGAGVCISASATRDGLTLIAVVLGSPSSADRFHSATTLLDYGFAN 303 >gi|317405763|gb|EFV86054.1| penicillin-binding protein [Achromobacter xylosoxidans C54] Length = 385 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 133/241 (55%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD +G VIA + PASLTK+MTAYVVF + K+ + IS A + P Sbjct: 35 WLLLDETSGQVIASHAATARIEPASLTKIMTAYVVFGAIHNKELSPDQKVVISTRAWKVP 94 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S + GS +++D L+ L+++S ND A+A+AE++ + + FV MN+T+ LGL Sbjct: 95 PGSSKMFLEPGSRVSVDQLLRGLMIQSGNDAAIALAEAVSGSVEAFVARMNDTAVQLGLH 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAV 207 THF + HG+ G Y+T D++IL+ R D+PQ Y Y K PN N + Sbjct: 155 GTHFASPHGLPDPGTYSTVSDLSILATRFIRDYPQLYKTYDSAKTYTYNNITQPNRNRLL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGD----QSLIAVILGALDRNTRNKVSASLLSMG 263 DG+KTG T A+G+ IVA+A + + + LI V++G R + S LL G Sbjct: 215 WLDPSVDGLKTGHTDAAGYCIVATAHRPNGKEQRRLITVVVGTASDKLRTQESRELLEWG 274 Query: 264 F 264 F Sbjct: 275 F 275 >gi|323705320|ref|ZP_08116895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535222|gb|EGB24998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 384 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG V+ E PAS+TK+MT +V L K T + S++A + + Sbjct: 38 LMDANTGKVLYEKNSHEELPPASVTKVMTMLLVIEALDSGKIKTTDKVVTSEHAYDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ LK + + SAND +VA+AE + +E+KFV+ MN +K LG T+F Sbjct: 98 QIYLEVGEEMTVDDLLKSVAMNSANDASVALAEYISGSEEKFVEEMNKRAKELGAKNTNF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 NA G+ + GHYT+ DMA++S + Y K ++ K+ NTN + + Sbjct: 158 KNASGLPEDGHYTSVYDMALISREL-VKHKNVFKYLTDKIDSVRNGKFSLANTNKLLWNY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG T + + + A+A +GD IAV+ GA D TR K ++ LL GF N Sbjct: 217 QGADGIKTGSTSEALYCLSATAKRGDTRFIAVVFGAPDSATRFKEASKLLDYGFAN 272 >gi|332307130|ref|YP_004434981.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174459|gb|AEE23713.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 390 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 134/238 (56%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D TG VIAE D PASLTK+MT+YV+ + T +TIS+NA Sbjct: 41 FILVDYQTGKVIAEQNADIQIPPASLTKMMTSYVIGKEIANGNIKDTDMVTISENAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ +++ + + +IV+S ND VA+AE + +E F MN ++ LG+ Sbjct: 101 FPDSSKMFIEVGTQISVADLNRGIIVQSGNDACVAMAEHIAGSEDAFASMMNLHAEKLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++T+F+N+HG+ HYTT RDMA L+ + TD P + K K N N + Sbjct: 161 TSTNFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYSEKEFTYNNIKQYNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+++V+SA QGD LIAV++GA R + LL GF Sbjct: 221 WDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADSERARKVENKKLLKYGF 278 >gi|288942562|ref|YP_003444802.1| beta-lactamase [Allochromatium vinosum DSM 180] gi|288897934|gb|ADC63770.1| Beta-lactamase [Allochromatium vinosum DSM 180] Length = 380 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 133/234 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG +AE D PASLTK+MTAY VF L ++ LT + +S+ A Sbjct: 39 YLLVDFHTGKTLAELNADERLEPASLTKIMTAYTVFRELASERIKLTDQVLVSEKAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G ++L++ LK +I++S ND +VA+AE + + F MN +K LG++ + Sbjct: 99 GSKMFIEVGKHVSLEDLLKGMIIQSGNDASVALAEYVSGNVESFANLMNAHAKRLGMTNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N +G+ YTTARDMA ++ + +FP+Y ++ + G N N + Sbjct: 159 HFTNPNGLPDPELYTTARDMARVAVALIREFPEYYAWYSNQEFTYNGITQANRNPLLKRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG+KTG+T A+G+ +V SA + D LI+V++G R + S +LL+ GF Sbjct: 219 PTADGIKTGYTKAAGYCLVGSAKRDDMRLISVVMGTPSPRARAEASLALLNYGF 272 >gi|222085114|ref|YP_002543644.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221722562|gb|ACM25718.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 429 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 4/260 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++FL+ ++ A++ P S A + Y ++D TG V+A + D +PASLTK+M Sbjct: 1 MKKFLMALSAAVVLLGAPVASFAGS----AYFIMDAKTGAVLASSNADDLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F + K + I +S NA+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYMTFEAINRGKLSWNSKIPVSSNAAGKPPTKLGLKPGGTVTVREAVDGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE+L +E F + M ++ +G+ T FMNA G+ TTARDM+ L+ + + Sbjct: 117 AAMAEALGGSESGFARLMTQKAREIGMRRTVFMNASGLPNMQQVTTARDMSTLAVALINN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +PQ F G +G++ N + + G DG+KTG+T ASGFN+V++ G++ +I Sbjct: 177 YPQEYRLFSQTGFTYRGQRVRGHNNLMYRYEGMDGIKTGYTNASGFNLVSAVRHGNRRVI 236 Query: 241 AVILGALDRNTRNKVSASLL 260 V++G R+ + ASLL Sbjct: 237 GVVMGGATARGRDALMASLL 256 >gi|332162265|ref|YP_004298842.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606331|emb|CBY27829.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666495|gb|ADZ43139.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 396 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 16/262 (6%) Query: 17 FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P+ A++ P Y L+D N+G V+AE D +PASLTK+M++YV+ +K Sbjct: 23 LPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKA 82 Query: 72 KKAMLTTPITISKNA--SEYPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K +T+ K+A + P + K G + L + K ++++S ND ++A+A+ Sbjct: 83 GKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALAD 142 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA+L + D P Sbjct: 143 YIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPDEY 202 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + K + N N W+ T L DGMKTGFT +G N+VASA G LI+V Sbjct: 203 ALHKEKEFTFNKIRQINRNRLLWS--TNLNVDGMKTGFTAGAGHNLVASATDGPMRLISV 260 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 +LGA R S LL+ GF Sbjct: 261 VLGAPSDRVRFSESEKLLTWGF 282 >gi|37525520|ref|NP_928864.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (DD-pept (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784948|emb|CAE13866.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (DD-pept (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 400 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 17/248 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G ++A PD +PASLTK+MT+YVV +K K +T+ K+A + Sbjct: 42 YVLMDYDSGKILAAGNPDERLDPASLTKIMTSYVVGQAIKAGKITPEDIVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++V+S ND ++A+A+ + ++ FV MNN + Sbjct: 100 TGNPILKGSSLMFLKPGDRVKVIDLNHGVVVQSGNDASIALADYVAGSQDVFVSLMNNYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ THF HG+ G ++TARDMA+LS + D P + K + PN Sbjct: 160 KALGLTNTHFRTVHGLDAEGQFSTARDMAVLSQAMIRDVPDEYALHKEKTFTFNKIQQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG+T +G+N+VASA +G LI+V+LGA R S L Sbjct: 220 RNRLLW--NKNMNVDGVKTGYTSGAGYNLVASATEGPMRLISVVLGAPSDRIRFVESEKL 277 Query: 260 LSMG--FY 265 L+ G FY Sbjct: 278 LAWGLRFY 285 >gi|317048758|ref|YP_004116406.1| beta-lactamase [Pantoea sp. At-9b] gi|316950375|gb|ADU69850.1| Beta-lactamase [Pantoea sp. At-9b] Length = 389 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 136/271 (50%), Gaps = 15/271 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 +V ++A + PF + + L+D TG ++ PD NPASLTKLMT Y Sbjct: 13 MIVWASLAQADDGMPFPLTPPSIDAASWVLMDATTGQILTAGNPDEERNPASLTKLMTGY 72 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKS 115 VV + + K +T+ K+A + N FK S M L K+ +I+ S Sbjct: 73 VVDRAIDQHKISRDDVVTVGKDA--WAAGNPVFKGSSLMFLKPGDKVTVRDLSRGVIIDS 130 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + +++ FV MN+ + LGL+ THF HG+ G +TTARD+A+LS Sbjct: 131 GNDACVALADYVAGSQQNFVTMMNSYVQKLGLTHTHFETVHGLDAPGQHTTARDLAVLSR 190 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 I + P + + K L G N N W L DG+KTG T +GFNI+AS+ Sbjct: 191 AIISGEPDFYAMYSEKTLTWNGITQNNRNGLLWD--NNLHVDGLKTGHTETAGFNIIASS 248 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 I G LIAVI+G R + + LL G Sbjct: 249 IVGQHRLIAVIMGGKSSKGREEQARKLLVWG 279 >gi|253578836|ref|ZP_04856107.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849779|gb|EES77738.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 143/254 (56%), Gaps = 12/254 (4%) Query: 23 AETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 AE+ L P L++ TG V+ + D +PAS+TK+MT ++F L + + Sbjct: 39 AESTDLIEAPSGILMEAQTGTVVYQKDADTRRSPASITKIMTLILIFDALDKGSLKMDDT 98 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +T S +A S ++G T++ +K +++ S ND +VA+AE +C +E++FV+HMN Sbjct: 99 VTTSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEHICGSEQEFVRHMN 158 Query: 140 NTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195 ++ LG+ THF + G+ + HYTTARD+AI+S + T +P+ + Y I I Sbjct: 159 ERAEGLGMKNTHFEDCCGLTESPDHYTTARDIAIMSRELITKYPKILEYSSIWMENITHV 218 Query: 196 --KGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 +G K NTN + ++ G G+KTG T + + + A A + D +LIAV++ A D Sbjct: 219 TRQGTKEFGLTNTNKLIRSYEGCVGLKTGSTSIAKYCLSAVAKRNDITLIAVVMAAPDYK 278 Query: 251 TRNKVSASLLSMGF 264 R K +AS+L+ GF Sbjct: 279 VRFKDAASMLNYGF 292 >gi|300716035|ref|YP_003740838.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661] gi|299061871|emb|CAX58987.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661] Length = 400 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AE++ D +PASLTK+M +YVV +K K +T+ K+A + Sbjct: 42 WILMDYNSGKVLAESHADDRLDPASLTKMMASYVVGQAIKAGKITNDDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND ++A+A+ + ++ FV MNN Sbjct: 100 TGNPILQGSSLMFLKPGDRIPVSELNKGIIIQSGNDASIALADYVAGSQDSFVSLMNNYV 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G Y+TARDMA++ + D PQ + K N Sbjct: 160 QALGLKNTHFKTVHGLDSDGQYSTARDMALIGQALIRDVPQEYALHKEKEFTFNRIHQQN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G N+VASA+ GDQ LI+V+LG+ TR + S L Sbjct: 220 RNRLLWS--SNLQVDGIKTGHTAGAGNNLVASAVSGDQRLISVVLGSPTDATRFRESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|303247169|ref|ZP_07333443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] gi|302491328|gb|EFL51216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] Length = 366 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 1/237 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D TG + PD PAS+TK+MT Y+VF + +A + + +S+ A S Sbjct: 37 VADYGTGKIFYSQDPDRRIAPASVTKVMTMYLVFDMVASGQASFSDKVKVSRRADATGGS 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+TLD ++ + V S ND AVA+AE +V+ MN ++ LG++ T F Sbjct: 97 TMNLRAGETVTLDELMRGMAVASGNDAAVAVAEHFGGVPA-WVKRMNAKARQLGMTRTTF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +G+ G TTARD+ L+ +PQ + Y + G + NTN +G G Sbjct: 156 KTPNGLPAPGQLTTARDLMKLAVSYLRHYPQALRYHSTTTINHCGAVHANTNRLLGVCEG 215 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTGF ASGFNI+A+A +G +IAV+LG RN+ + +L F D Sbjct: 216 MDGIKTGFVNASGFNIIATAKRGKTRIIAVVLGGRSSQVRNRETERILDASFEGSVD 272 >gi|56477153|ref|YP_158742.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1] gi|56313196|emb|CAI07841.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1] Length = 401 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 125/234 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+A PD PASLTKLMTAY+ F+ LK L + +S A Sbjct: 57 WLLMDHATGQVLAAQEPDARIEPASLTKLMTAYLTFAALKNGTITLDQTVPVSNKAWRSE 116 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+ +I++S ND VA+AE L +E+ F MN ++ LG+ T Sbjct: 117 GSRMFIEPNRPVTVGELTSGMIIQSGNDACVALAELLAGSEEAFAHMMNAEAQRLGMKNT 176 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G+ YTTARD+ +L+ I DFP+Y Y+ K PN N + Sbjct: 177 HFTNSTGLPDPQLYTTARDLGLLAAAIVRDFPEYYRYYSQKEYTYNKITQPNRNRLLWLD 236 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T ++G+ +++SA +G + LI+V+LG R + S LL+ GF Sbjct: 237 TTVDGLKTGHTSSAGYCLISSAQRGPRRLISVMLGTDSDTIRAQESLKLLNYGF 290 >gi|224825266|ref|ZP_03698371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum 2002] gi|224602187|gb|EEG08365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum 2002] Length = 380 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 5/268 (1%) Query: 1 MRQFLVIIAMAMLSNIF---PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 + LV A+A+ S F PF+ + E YY L+D +G V+A + PD PASL Sbjct: 4 LTSLLVAAAVALPSVSFANAPFVPPVPEIAGKAYY-LVDFYSGQVVASSDPDKRIAPASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TKLMT Y+ + +KEK+ L +T+S S +++D+ +K + V+S Sbjct: 63 TKLMTGYLTYKAIKEKRLTLDQKLTVSHKGWTTGGSRMFLDPKIPVSVDDLIKGMDVQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND V +AE++ +E+ F Q M ++ LG++ T F NA G+ HYTT D+ IL+ Sbjct: 123 NDACVTLAEAIAGSEEAFGQMMTAEARRLGMNNTQFRNATGLPNPEHYTTVHDLGILASA 182 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I ++P++ + +K G PN N + DGMKTGFT +G+N+VAS+ + Sbjct: 183 IIREYPEFYKTYSLKSFTYNGISQPNRNLLLYRDPNVDGMKTGFTDDAGYNMVASSRRDG 242 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 + +I+V++G R S+ LL+ G Sbjct: 243 RRVISVVVGTASPEARAVESSKLLNYGL 270 >gi|330811926|ref|YP_004356388.1| cell division-related protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380034|gb|AEA71384.1| putative cell division-related protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 385 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 129/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 FVLMDASSGEVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA++E + +E F MN T +LG++ + Sbjct: 99 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMNKTVADLGMTNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A DMA+L+ I + P + + K G K PN N + Sbjct: 159 HFMNPTGLPNPEHYSSAHDMALLARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LIAV+ G R + LL+ GF Sbjct: 219 KTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTSSEVARAAETQKLLTYGF 272 >gi|322832952|ref|YP_004212979.1| Beta-lactamase [Rahnella sp. Y9602] gi|321168153|gb|ADW73852.1| Beta-lactamase [Rahnella sp. Y9602] Length = 389 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 133/253 (52%), Gaps = 11/253 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK------ 84 + L+D +G V+A PD NPASLTKLMT YV+ L KK + +T+ + Sbjct: 40 FVLMDYASGDVLAAGNPDERRNPASLTKLMTGYVIDRALDHKKITMDDVVTVPQEAWVAG 99 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S S K G +T+ + ++ +I+ S ND VA+A+ + ++ FV MN + Sbjct: 100 NKSLAGSSLMFLKPGDHVTVRDLIRGIIITSGNDACVAMADYVAGSQDSFVGMMNQYVVS 159 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +GL+ THF HG+ G YTT+ D+A LS I P+ H + K L N N Sbjct: 160 MGLTNTHFETVHGLDAPGQYTTSYDLAKLSRAIIGGEPEEYHMYAEKSLTYDNITQQNRN 219 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W L DG+KTG T ++GFNI+ASA QGD+ LIAV++G R + + LL+ Sbjct: 220 GLLW--DKNLQVDGLKTGHTESAGFNIIASATQGDRRLIAVVMGGKSSKGREEQARKLLT 277 Query: 262 MGFYNKTDRKKIN 274 GF T ++ N Sbjct: 278 WGFREYTSKQIFN 290 >gi|149925918|ref|ZP_01914181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105] gi|149825206|gb|EDM84417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105] Length = 397 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 132/240 (55%), Gaps = 6/240 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD TG +AE +PASLTKLMTAY+ F+ L+ K+ + + +S A + Sbjct: 48 YMLLDLTTGQTLAEFNSRERLDPASLTKLMTAYMAFAALESKQIRMDQQVPVSPYAWKAE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T++ L +IV+S ND + AIAE L E F MN +K LGL+ T Sbjct: 108 GSRMFIEPNKPVTVEELLYGVIVQSGNDASRAIAELLAGDENNFATLMNQQAKRLGLTDT 167 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIKGKKYPNTNWAVGT 209 +F N+ G+ HYTTARD+ IL+ RI TDFP+Y + K G + PN N + Sbjct: 168 NFKNSTGLPDPQHYTTARDLGILAKRIITDFPEYYKKMYSTKEYTYNGIRQPNRNRLLWI 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T ++G+ +V+SA + D+ L++V+LG R + S L++ G+ Sbjct: 228 DPSVDGMKTGHTESAGYCLVSSANRTLPNGVDRRLLSVVLGTTSDQARTQESLKLMNYGY 287 >gi|330861526|emb|CBX71735.1| D-alanyl-D-alanine carboxypeptidase dacC [Yersinia enterocolitica W22703] Length = 428 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 16/262 (6%) Query: 17 FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P+ A++ P Y L+D N+G V+AE D +PASLTK+M++YV+ +K Sbjct: 55 LPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKA 114 Query: 72 KKAMLTTPITISKNA--SEYPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K +T+ K+A + P + K G + L + K ++++S ND ++A+A+ Sbjct: 115 GKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALAD 174 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA+L + D P Sbjct: 175 YIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPDEY 234 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + K + N N W+ T L DGMKTGFT +G N+VASA G LI+V Sbjct: 235 ALHKEKEFTFNKIRQINRNRLLWS--TNLNVDGMKTGFTAGAGHNLVASATDGPMRLISV 292 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 +LGA R S LL+ GF Sbjct: 293 VLGAPSDRVRFSESEKLLTWGF 314 >gi|209964479|ref|YP_002297394.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] gi|209957945|gb|ACI98581.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] Length = 403 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 142/263 (53%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R+ I + ++ I P + L+DT+TG V+ E D +S++K+MT Sbjct: 29 RRLAAIAVLTLVGTILPAQAATIDTIAREAILIDTSTGTVLFEKNADERTPTSSMSKVMT 88 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+VF ++ + L + +S+NA S + G+++ +++ ++ +I++S ND + Sbjct: 89 MYMVFDRIRSGRLSLDDTLPVSENAWRMQGSKMWVELGNSIRVEDLIRGVIIQSGNDACI 148 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L +E F M + +G++A++FMNA G HY+TARD+A L+ R+ DF Sbjct: 149 VLAEGLSGSEPAFAADMTRKAHEMGMTASNFMNASGWPDPDHYSTARDLATLAQRLIKDF 208 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+++HY+ K G K N N + +G DG+KTG T ++G+ ++A+ + + L+ Sbjct: 209 PEFLHYYSEKEFTYHGIKQGNRNPLLYRNMGVDGLKTGHTESAGYGLIATGERDGRRLVL 268 Query: 242 VILGALDRNTRNKVSASLLSMGF 264 V+ G + R SA LL G+ Sbjct: 269 VVNGLPNMQARADESARLLEWGW 291 >gi|71905933|ref|YP_283520.1| penicillin-binding protein 6 [Dechloromonas aromatica RCB] gi|71845554|gb|AAZ45050.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Dechloromonas aromatica RCB] Length = 391 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 135/235 (57%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LL+ + V+ D PASLTKLMTAY+ F+ +++K L+ + +S+ A Sbjct: 48 WLLLEVGSNQVLTAEKSDERLEPASLTKLMTAYLTFAAIRQKTIGLSQTLPVSEKAWRTG 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + + +++ +K +IV+S ND V +AE + +E+ F Q MN ++ LG++ + Sbjct: 108 GSKMFVRVDTQVPVEDLIKGMIVQSGNDACVTLAEGIAGSEENFAQMMNREAQRLGMTNS 167 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGT 209 HF+N+ G+ HYTTARD+++L+ + DFP+ Y Y+ +K PN N + Sbjct: 168 HFINSTGLPDPQHYTTARDLSLLASALIRDFPEDYKKYYSMKEFRYNNITQPNRNRLLFI 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A+G+ +++SA++ + L++V+LG + R S LL+ GF Sbjct: 228 DPTVDGVKTGHTEAAGYCLISSALRDKRRLLSVVLGTTSDSARATESQKLLNWGF 282 >gi|269966371|ref|ZP_06180456.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269828958|gb|EEZ83207.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 390 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E NPASLTKLMTAYV + L + IS+NA Sbjct: 41 YVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEINTGNITLNDEVVISRNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + LIV+S ND +VAIAE + +E FV MN+ + L L Sbjct: 101 FPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLEL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S T F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 161 SNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA QGD LIAV++GA N R S LLS GF Sbjct: 221 RDRSMNVDGMKTGYTSGAGYSLATSATQGDMRLIAVVMGAKSENVRESESKQLLSYGF 278 >gi|114775714|ref|ZP_01451282.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1] gi|114553825|gb|EAU56206.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1] Length = 334 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 16/242 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G +IA + D PASLTK+MT Y+ F LK+ + L TP+++S+ A + Sbjct: 43 WAMIDARSGQIIASHNADEQLPPASLTKMMTLYLAFEALKQGRLSLDTPVSVSQKAWKI- 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 GSTM LD + + + S ND +A+AE + +E F + MN + Sbjct: 102 -------GGSTMFLDPRMHPTVGQLIHGIATYSGNDACIALAEHMEGSESTFAERMNAKA 154 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ +HF+NA G GHY++A DMAIL + DFP+ F + G+ PN Sbjct: 155 RELGMLHSHFVNATGFPTEGHYSSAGDMAILGAALWRDFPERYKLFDERDFTYDGRTQPN 214 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + T ADG+KTG T +G+ +V SA + + +A + G R + + +LL Sbjct: 215 RNRLLWTMSEADGIKTGHTQEAGYCLVGSAEKANTRFVAAVFGTKSDRARAQETRTLLRF 274 Query: 263 GF 264 GF Sbjct: 275 GF 276 >gi|238897881|ref|YP_002923560.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465638|gb|ACQ67412.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 384 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 +LSN+ P + K Y L+D N+G ++AE D PASLTK+MT+YV+ +K Sbjct: 13 LLSNLIP---VPPEIKAVSYILMDYNSGKILAEKNADEHRMPASLTKMMTSYVIGQAIKS 69 Query: 72 KKAMLTTPITISKNA-----SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAE 125 +K + +T+ K+A E+ S+ F K G +++ + + ++S ND VA+A Sbjct: 70 EKIGVNDIVTVGKDAVSTGNPEFKGSSLMFLKPGDQVSVAQLTRGITLQSGNDACVAMAN 129 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + ++ FV MN ++ +GL THF N HG+ G YT+ARDMA++ + D P Sbjct: 130 YVAGSQDSFVHLMNAYAQEMGLKNTHFKNVHGLDSEGQYTSARDMALMGRALIHDVPDEY 189 Query: 186 HYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 ++ K + N N + L DG+KTG T A+G+N+VASA QG LI+V+L Sbjct: 190 AIYKEKEFTFNQIRQLNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATQGPMRLISVVL 249 Query: 245 GALDRNTRNKVSASLLSMGF 264 G R S LLS GF Sbjct: 250 GGRTFKEREAESKKLLSWGF 269 >gi|328471030|gb|EGF41941.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 389 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV + L + IS+NA Sbjct: 40 YVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + L+V+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 100 FPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 160 TNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD LIAV++GA ++ R S LLS GF Sbjct: 220 RDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGF 277 >gi|153838852|ref|ZP_01991519.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810] gi|260900530|ref|ZP_05908925.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] gi|149747680|gb|EDM58590.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810] gi|308107023|gb|EFO44563.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] Length = 389 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV + L + IS+NA Sbjct: 40 YVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + L+V+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 100 FPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 160 TNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD LIAV++GA ++ R S LLS GF Sbjct: 220 RDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGF 277 >gi|85058899|ref|YP_454601.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str. 'morsitans'] gi|84779419|dbj|BAE74196.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str. 'morsitans'] Length = 396 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+AE D +PASLTK+M++YV+ +K K T +TI K+A + Sbjct: 42 YILMDYQSGKVLAEANADQRLDPASLTKIMSSYVIGQAMKAGKIHPTDKVTIGKDA--WA 99 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K G +T+D+ K ++++S ND ++A+A+ + ++ FV +N + Sbjct: 100 TGNPVLRGSSLMFLKPGEQVTVDDLNKGIVIQSGNDASIALADHVAGSQDAFVSLINQYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF+ HG+ G Y+TARDMAILS + + P + K K PN Sbjct: 160 QALGLKNTHFLTVHGLDAEGQYSTARDMAILSQALIRNVPDEYALHKEKEFTYNKIKQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ L DG+KTG+T +G N+VASA LI+V+LGA R + S L Sbjct: 220 RNRLLWSGN--LTVDGVKTGYTSGAGHNLVASATDNGMRLISVVLGAPTDGIRFRESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|313901874|ref|ZP_07835294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467867|gb|EFR63361.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 437 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 135/241 (56%), Gaps = 12/241 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ E D P +PAS++KLMT + + + L +T+S A P S Sbjct: 89 VMDPASGQILWEKNGDEPRHPASISKLMTLLLTLEAIDAGQIRLQDQVTVSPRAQGTPGS 148 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +T+++ +K + V SAND VA+AE + +FVQ MN + LGL+ T F Sbjct: 149 TAFLEAGERITVEDLIKAVAVASANDACVALAEYISGDVDRFVQRMNQRAAELGLTRTRF 208 Query: 153 MNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKY--PNT 203 ++ HG+ Q G+ +ARD+A+LS + P+ +HY I KG + +++ NT Sbjct: 209 VDPHGLTDQPGNRMSARDVALLSRYLINHHPEILHYTSIWEDWLRKGTD---REFWLTNT 265 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N V + G DG+KTG T SG ++V +A +GD I V+LGA D NTR + ++ LL Sbjct: 266 NKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGAPDSNTRWREASRLLDWA 325 Query: 264 F 264 F Sbjct: 326 F 326 >gi|238753434|ref|ZP_04614797.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] gi|238708387|gb|EEQ00742.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] Length = 401 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 20/275 (7%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V + +L P + A+ P Y L+D N+G ++ + D +PASLTK+M Sbjct: 13 VTFSAGLLLLTMPAVRAADEQPAPPIDAKAYVLMDFNSGKILTQGNADQRLDPASLTKIM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLL------I 112 ++YV+ +K K +T+ K+A + N + S M L + +KLL + Sbjct: 73 SSYVIGQAIKAGKVHPDDMVTVGKDA--WATGNPVLRGSSLMFLKPGDQVKLLDLNKGIV 130 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND ++A+A+ + ++ FV MNN +K LGL THF+ HG+ G Y+TARDMA+ Sbjct: 131 IQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLDNTHFLTVHGLDAEGQYSTARDMAV 190 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIV 229 L+ + D P+ + K + N N W T L DG+KTG T +G N+V Sbjct: 191 LAQALIRDVPEEYALHKEKEFTFNNIRQINRNRLLW--NTNLNVDGVKTGHTAGAGHNLV 248 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ASA G LI+V+LGA R S LLS GF Sbjct: 249 ASATDGPMRLISVVLGAPSDRVRFSESEKLLSWGF 283 >gi|258542238|ref|YP_003187671.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256633316|dbj|BAH99291.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256636375|dbj|BAI02344.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-03] gi|256639428|dbj|BAI05390.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-07] gi|256642484|dbj|BAI08439.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-22] gi|256645539|dbj|BAI11487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-26] gi|256648592|dbj|BAI14533.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-32] gi|256651645|dbj|BAI17579.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654636|dbj|BAI20563.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-12] Length = 406 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 1/237 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + +LD N+G + E D P+SLTK+MTAYV F LK + L + +S+ A Sbjct: 67 WACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRM 126 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S G ++++ + ++ ++++S ND + IAE + +E++FV MN+T+ LGL+ Sbjct: 127 QGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTN 186 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K + N N V Sbjct: 187 SHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVK 246 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 L ADG+KTG T A GF + AS+ + + ++ + G R + + L+ F N Sbjct: 247 GL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAFAN 302 >gi|312963236|ref|ZP_07777720.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6] gi|311282502|gb|EFQ61099.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6] Length = 385 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 2/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 WVLMDAASGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T +LG++ + Sbjct: 99 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTVADLGMTNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 HFMN G+ HY++A DMAIL+ I+ D Y Y Q K K PN N + Sbjct: 159 HFMNPTGLPNPEHYSSAHDMAILARAIIRVDPVHYAIYSQ-KEFFWNNIKQPNRNLLLWR 217 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ Q LIAV+ G R + LL+ GF Sbjct: 218 DKTVDGLKTGHTEEAGYCMVSSAVRDGQRLIAVVFGTNSEQARAAETQKLLTYGF 272 >gi|126665209|ref|ZP_01736192.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17] gi|126630579|gb|EBA01194.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17] Length = 392 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 161/301 (53%), Gaps = 13/301 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ +G VI EN PASLTK+MTAY+V L E + + + IS A + Sbjct: 46 YVLMEPKSGQVIMENNSSERLPPASLTKMMTAYIVERELDEGRIAMGDMVPISVTAWQTG 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + ++G+++T+++ L+ ++++S ND +VA+AE + +E FV MN + LG++ T Sbjct: 106 GSRTFVREGTSVTVEDLLRGVVIQSGNDASVALAEFVAGSEGAFVDIMNQQADLLGMTNT 165 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F NA G+ HY+TA+D+A+L+ D+P+ + K + PN N + Sbjct: 166 NFENATGLPSPNHYSTAQDLALLAQATINDYPETYPIYAEKHFTFNNIRQPNRNSLLWRD 225 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTD 269 DG+KTG T +G+ +VASA + D IAV++GA +R++ +L+ GF Y +++ Sbjct: 226 NSVDGLKTGHTEEAGYCLVASAKRDDTRFIAVVMGARSAESRSQEVQKMLNYGFRYYQSE 285 Query: 270 R--KKINYIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 R +IK +N +P + E+V Y T + A+++ ID + + Sbjct: 286 RLFSAGQELIKSPVWGGAANTLPVGVFEDV---------YVTISRGARNQLESVIDLDSV 336 Query: 327 T 327 Sbjct: 337 V 337 >gi|194367218|ref|YP_002029828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] gi|194350022|gb|ACF53145.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 137/242 (56%), Gaps = 11/242 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A + PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 57 WVLMDYATGQVLAGENINEQLAPASITKVMTSYVIAAEVKNGKVRPDDQVMMSERAWREG 116 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 117 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 176 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 G+ +HF+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K PN N Sbjct: 177 GMKNSHFVNAHGLTAPGHHSSAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNL 236 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W G+ DG+KTG T +G+ +++SA +GDQ L+AV+LG R S +LL+ Sbjct: 237 LLWRDGSV---DGIKTGHTSEAGYCLMSSAQRGDQRLVAVVLGGQSEKQRADDSLALLNW 293 Query: 263 GF 264 GF Sbjct: 294 GF 295 >gi|289209131|ref|YP_003461197.1| beta-lactamase [Thioalkalivibrio sp. K90mix] gi|288944762|gb|ADC72461.1| Beta-lactamase [Thioalkalivibrio sp. K90mix] Length = 415 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 131/219 (59%), Gaps = 4/219 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G ++A D PASLTKLMTAYVVF +++ + L +TIS+ A Sbjct: 58 YALMDFDSGLMLASREADVDREPASLTKLMTAYVVFGEIRDGRLGLEDTVTISERAWRTG 117 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ++ + G + +++ L+ +I++S ND + A+AE++ +E FV MNN ++ LG+ Sbjct: 118 MRGASRMFIEVGDEVKVEDLLRGMIIQSGNDASTALAEAVAGSEGAFVDMMNNQARELGM 177 Query: 148 SATHFMNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + ++F N+HG+ T+A+DMA+L+ + +FP Y+ + E N N Sbjct: 178 TRSYFTNSHGLPSDEPQSTSAQDMALLARALIREFPDLYGYYSERSFEFNDISQSNRNML 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + G DG+KTG+T A+G+N+V+SA + D+ LIAV+LG Sbjct: 238 LWRDAGFDGLKTGWTSAAGYNLVSSAKRSDRRLIAVVLG 276 >gi|53803228|ref|YP_115023.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] gi|53756989|gb|AAU91280.1| putative D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] Length = 362 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 1/242 (0%) Query: 24 ETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 E PY L ++ + V+ E D +PASLTK+MT Y+VF L + + L Sbjct: 25 EAVAAPYSALVMEVESDRVLYERNADEIRHPASLTKMMTLYLVFEALVQGRISLYDTFYA 84 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ PS + G +T++ + L+ SAND A + E L +E F M + Sbjct: 85 SSYAASRSPSRIGLRPGDPLTVEEGILALVTCSANDAAATLGEGLAGSEPAFAAMMTRKA 144 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+S T F NA G+ TTARDM L + FPQY YF + +G+ + N Sbjct: 145 RELGMSQTVFRNASGLPDPEQVTTARDMYRLGKALLKHFPQYYPYFSTSRFQYRGRSFHN 204 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + + GADG+KTGF ASGFN+VASA + L+ V+ G R+ +L Sbjct: 205 HNHLLENYYGADGIKTGFVNASGFNLVASARRNGVRLVGVVFGGNSSFRRDAHMRDILDD 264 Query: 263 GF 264 GF Sbjct: 265 GF 266 >gi|28875449|gb|AAO59939.1| DacD [uncultured bacterium] Length = 421 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 35/305 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + K+ T +T+ ++A + Sbjct: 72 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDA--WA 129 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MNN + Sbjct: 130 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYA 189 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P + H + K L G N Sbjct: 190 QKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQN 249 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + L Sbjct: 250 RNGLLW--DKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKL 307 Query: 260 LSMGFYN-------------------KTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTT 299 L G +N D++KI+ +DF+ EVPNI + Sbjct: 308 LQWGQHNFDTVQVLRSGKQVGTERIWYGDKEKISLGTEQDFWMALPKAEVPNIKAKYVLD 367 Query: 300 QKEII 304 +KE++ Sbjct: 368 KKELV 372 >gi|127513867|ref|YP_001095064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4] gi|126639162|gb|ABO24805.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4] Length = 390 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D N+G +IAE NPASLTK+MT+YV+ +K +TISKNA Sbjct: 40 FILMDYNSGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPQDKVTISKNAWSKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G ++++ + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 100 FPDSSKMFIEVGKQVSVEELNRGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMA+L + D P+ + K G K N N Sbjct: 160 RDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYRVYSEKSFTYNGIKQYNRNGLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+V SA + L++V+LG + R S LL+ GF Sbjct: 220 WDKS--LNVDGIKTGHTSGAGYNLVTSATKDGMRLVSVVLGTASESARKAESKKLLNYGF 277 >gi|253688070|ref|YP_003017260.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754648|gb|ACT12724.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 401 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G V+AE+ D +PASLTK+M +YV+ +K K T +T+ K+A + Sbjct: 43 FILMDYHSGKVLAESNADERLDPASLTKIMASYVIGQAIKSGKISPTDEVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MNN Sbjct: 101 TGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADYVAGSQDAFVSLMNNYV 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L+ THF+ HG+ G Y+TARDMA+L + D P+ + K + PN Sbjct: 161 KALNLTNTHFLTVHGLDATGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNNIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA +G+ LI+V+LGA R + S L Sbjct: 221 RNRLLWS--TNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLGAQTDAIRFRESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|241204780|ref|YP_002975876.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858670|gb|ACS56337.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 517 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A+ P+ Sbjct: 51 VVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPT 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG++ T Sbjct: 111 KLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTT 170 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ Sbjct: 171 YRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVR 230 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASL 259 G DG+KTG+T A+GFN+V+S +S++ V+LG A D RN +++ L Sbjct: 231 GVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVLGGASTPARDAQMRNLIASYL 283 >gi|329113407|ref|ZP_08242188.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum DM001] gi|326697232|gb|EGE48892.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum DM001] Length = 406 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 1/237 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + +LD N+G + E D P+SLTK+MTAYV F LK + L + +S+ A Sbjct: 67 WACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRM 126 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S G ++++ + ++ ++++S ND + IAE + +E++FV MN+T+ LGL+ Sbjct: 127 QGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTN 186 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K + N N V Sbjct: 187 SHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVK 246 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 L ADG+KTG T A GF + AS+ + + ++ + G R + + L+ F N Sbjct: 247 GL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAFAN 302 >gi|315127074|ref|YP_004069077.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas sp. SM9913] gi|315015588|gb|ADT68926.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas sp. SM9913] Length = 386 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG VIAE D PASLTK+MT+YV+ + + T +T+S+ A Sbjct: 40 YFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVIGTEINAGNIAPTDMVTVSEKAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++D+ +I++S ND VA+AE + +E F MN ++ +G+ Sbjct: 100 FPESSKMFIEVGKQVSVDDLNHGIIIQSGNDACVAMAEHIAGSESAFADLMNAHAEKIGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF+N+HG+ HYTT RDMA L + D P ++ K G K N N Sbjct: 160 TNTHFVNSHGLDTDAHYTTPRDMATLGAALIRDVPDEYALYKQKSFTFNGIKQYNRNSLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V SA + D LIAV++G R S LL+ GF Sbjct: 220 W--DESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIAVVMGTSSERARKVESKKLLNYGF 277 >gi|261251421|ref|ZP_05943995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] gi|260938294|gb|EEX94282.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] Length = 388 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ + + NPASLTKLMTAYV + L + IS+NA Sbjct: 39 YILMDYHTGEVLVQKNSEKKLNPASLTKLMTAYVAGQEVNSGNIALDDQVRISRNAWAKN 98 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + L + + LIV+S ND +VAIAE + +E FV MN+ S+ LGL Sbjct: 99 FPDSSKMFIEVGTDVQLMDLYRGLIVQSGNDASVAIAEHVAGSEDAFVSLMNSWSQKLGL 158 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T + N HG+ G Y+T D+A+LS I D P + G N N + Sbjct: 159 ANTSYTNPHGLDSDGLYSTPYDIALLSQAIIRDLPDIYPLYSETAYTYNGITQYNRNGLL 218 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ SA GD LI+V++G+ +R S LLS GF Sbjct: 219 RDRSLNVDGMKTGYTSGAGYSLATSATSGDMRLISVVMGSSSAKSRESESKQLLSYGF 276 >gi|320173897|gb|EFW49075.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] Length = 279 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 133/240 (55%), Gaps = 11/240 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWAMG 101 Query: 90 -PPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S LL+ Sbjct: 222 RLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 >gi|296272811|ref|YP_003655442.1| beta-lactamase [Arcobacter nitrofigilis DSM 7299] gi|296096985|gb|ADG92935.1| Beta-lactamase [Arcobacter nitrofigilis DSM 7299] Length = 389 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 4/250 (1%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 +I P ++I K Y L+D +T ++ D PASLTKLMT+Y+V + + + Sbjct: 26 SIQPLINI----KAKSYILMDYDTKEILLSKNTDEKLPPASLTKLMTSYIVSTKINSGEI 81 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L + ISK A + S + + + L +K +IV+S ND +AIAE + +EK+F Sbjct: 82 SLKDKVFISKKAWKMTGSRTFLNVNTKVDLSKLIKGMIVQSGNDAVIAIAEHISGSEKEF 141 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V+ MN +K L L TH+ +A G+ HY+TA D+A+LS I DFP + ++ IK + Sbjct: 142 VKLMNKYAKKLNLKNTHYNDATGLPTKDHYSTAHDIALLSRAIIKDFPDHYSWYSIKNFK 201 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 N N + DG+KTG T A+G+ + +SA + + LIAV++G R K Sbjct: 202 YNNISQNNRNKLLWKDTSVDGLKTGHTMAAGYCLASSAKRKNMRLIAVVMGTKSSKARAK 261 Query: 255 VSASLLSMGF 264 S LL+ GF Sbjct: 262 ESEKLLNYGF 271 >gi|332532441|ref|ZP_08408319.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis ANT/505] gi|332038084|gb|EGI74531.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis ANT/505] Length = 387 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG VIAE D PASLTK+MT+YV+ + +K T +T+S+ A Sbjct: 40 YFLVDFTTGKVIAEGEADTQLAPASLTKMMTSYVIGTEIKAGNIATTDMVTVSEKAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++D +I++S ND VA+AE + +E F MN + LG+ Sbjct: 100 FPESSKMFIEVGKQISVDELNHGIIIQSGNDACVAMAEHIAGSESAFADLMNAHAAKLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 S +HF+N+HG+ H+TT RDMA L + D P ++ K G K N N Sbjct: 160 SNSHFINSHGLDTDEHFTTPRDMATLGAALIRDVPDEYALYKQKSFTYNGIKQYNRNSLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V SA + D LIAV++G R S LL+ GF Sbjct: 220 W--DESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIAVVMGTSSERARKVESKKLLNYGF 277 >gi|300722494|ref|YP_003711784.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297629001|emb|CBJ89586.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus nematophila ATCC 19061] Length = 402 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G ++A N D +PASLTK+MT+YV+ +K K +TI K+A + Sbjct: 44 YVLMDYYSGKILASNNADERLDPASLTKMMTSYVIGLAVKSGKISTEDWVTIGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MN S Sbjct: 102 TGNPVLKGSSLMFLKPGDRVKVIDLNRGIVIQSGNDASIALADYVAGSQDSFVDLMNQYS 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ THF HG+ G Y+TA DMA+LS + D P+ + K + PN Sbjct: 162 KTLGLTNTHFKTVHGLDAAGQYSTAHDMALLSQAMIRDVPEEYALNKEKEFTFNNIRQPN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN+VASA +G LI+V+LGA R S L Sbjct: 222 RNRLLW--NKNMNVDGVKTGHTSGAGFNLVASATEGPMRLISVVLGAPSDRMRFSDSEKL 279 Query: 260 LSMGF 264 LS GF Sbjct: 280 LSWGF 284 >gi|28901151|ref|NP_800806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260362712|ref|ZP_05775581.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] gi|260879998|ref|ZP_05892353.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|260894673|ref|ZP_05903169.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|28809664|dbj|BAC62639.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308086579|gb|EFO36274.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|308091747|gb|EFO41442.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|308112412|gb|EFO49952.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] Length = 389 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV + L + IS+NA Sbjct: 40 YVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +++ L + + L+V+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 100 FPDSSKMFIEVNTSVPLSDLYRGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 160 TNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA GD LIAV++GA ++ R S LLS GF Sbjct: 220 RDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGF 277 >gi|271500864|ref|YP_003333889.1| beta-lactamase [Dickeya dadantii Ech586] gi|270344419|gb|ACZ77184.1| Beta-lactamase [Dickeya dadantii Ech586] Length = 402 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 145/276 (52%), Gaps = 20/276 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +V A +L + P L + P + L+D +G V+AE+ D +PASLTK+ Sbjct: 13 IVAAATGILMAVSPVLQAEQMPPPPQIDAKAFILIDYGSGRVLAESNADTRLDPASLTKI 72 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALKLL 111 M++YV+ +K K +T+ K+A + N T K G +++ + K + Sbjct: 73 MSSYVIGQAIKVGKITPEDKVTVGKDA--WAGGNPTLRGSSLMFLKPGDQISVSDLNKGI 130 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA Sbjct: 131 VIQSGNDASIALADYVAGSQNAFVSLMNQYAATLGLTNTHFLTVHGLDTPGQYSTARDMA 190 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNI 228 L+ + D P K + PN N W+ + L DG+KTG+T +G ++ Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWS--SNLRVDGVKTGYTDGAGHSL 248 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 VASA+ GD LI+V+LGA R + S LL+ GF Sbjct: 249 VASAVDGDMRLISVVLGAPSDTIRFRESEKLLTWGF 284 >gi|209549453|ref|YP_002281370.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535209|gb|ACI55144.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 517 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 1/248 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A+ P+ Sbjct: 51 VVDAKTGNVLYSENADRLQYPASLTKMMTIYMTFEALEQGRIRLDTPVPFSAHAAAQAPT 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG++ T Sbjct: 111 KLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTT 170 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ Sbjct: 171 YRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVR 230 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+T A+GFN+V+S +S++ V+LG R+ +L++ + R Sbjct: 231 GVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVLGGASTPARDAQMRNLIATYLPKASSRG 290 Query: 272 KINYIIKD 279 + +I + Sbjct: 291 GSSALIAE 298 >gi|149377633|ref|ZP_01895371.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893] gi|149358106|gb|EDM46590.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893] Length = 388 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G VI E PASLTK+MTAY+V L E + L+ + IS NA Sbjct: 42 YILMDPLSGRVIMEENSHERLPPASLTKMMTAYIVERELDEGRISLSDMVPISVNAWRTE 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + K+G+ ++++N LK +I++S ND +VA+AE + +E FV MN ++ LG++ + Sbjct: 102 GSRTFVKEGTEVSVENLLKGVIIQSGNDASVALAEYIAGSEGAFVDIMNQQAQILGMNES 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F NA G+ H++TA D+A+L+ I D+P+ + K + PN N + Sbjct: 162 SFANATGLPAPDHFSTAYDLALLAKAIINDYPENYPLYAQKHFTYNNIRQPNRNSLLWRD 221 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTD 269 DG+KTG T +G+ +VASA + D LIAV++G ++R + +L+ GF Y +++ Sbjct: 222 DSVDGLKTGHTEEAGYCLVASAKRNDTRLIAVVMGTDSTSSRAQEVQKMLNYGFRYYQSE 281 Query: 270 R 270 R Sbjct: 282 R 282 >gi|323524598|ref|YP_004226751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1001] gi|323381600|gb|ADX53691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1001] Length = 409 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 140/258 (54%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A PD PASLTKLMTAY+VF L+ KK + +T S+ Sbjct: 55 WVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKIAMDQTVTPSEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 115 TDESRMFVEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVNMMNTEAQRLGMT 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K K PN N + Sbjct: 175 HTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ K N ++ Sbjct: 295 YGYSAYDTVRLYKANQVV 312 >gi|116252287|ref|YP_768125.1| penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115256935|emb|CAK08029.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 523 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+ F L++ + L TP+ S +A+ P+ Sbjct: 58 VVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPT 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 + G T+T++ + L+ SAND A A+ E L +E +F Q M + LG++ T Sbjct: 118 KLGVRAGGTITVEQGILGLVTLSANDAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTT 177 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA+G+ TTARD A L ++ FPQY YF + + + + N VG+ Sbjct: 178 YRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVR 237 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASL 259 G DG+KTG+T A+GFN+V+S +S++ V++G A D RN +++ L Sbjct: 238 GVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVMGGASTPARDAQMRNLIASYL 290 >gi|260777069|ref|ZP_05885963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260606735|gb|EEX33009.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 394 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 Y ++D ++G V+A PD P PASLTKLMTAYVV + + TIS+NA Sbjct: 35 YVVMDYHSGQVVASQNPDTPLAPASLTKLMTAYVVGQEINAGRLSWDDKATISRNAWSVN 94 Query: 89 YP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P PS K G +++ N + +IV+S ND +VA+AE + +E FV MN ++ LG+ Sbjct: 95 FPEPSKMFIKPGDEISIRNLMLGVIVQSGNDASVALAEHVAGSESAFVSLMNGWTQTLGM 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T F+NAHG+ TT +DMA L I D P+ +Q K + N N Sbjct: 155 ENTQFINAHGLDGDNIQTTPKDMANLMRAIIKDVPEVYKLYQEKKFTWNDIEQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG KTG+T +G+++V+SA +G LI+V++G + R S +LL GF Sbjct: 215 W--DRSLNVDGGKTGYTENAGYSLVSSATEGRMRLISVVMGTPSQQARTSASRNLLGYGF 272 >gi|110834820|ref|YP_693679.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2] gi|110647931|emb|CAL17407.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2] Length = 386 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 137/268 (51%), Gaps = 6/268 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAE-TNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASL 56 +F V+ A+ F L+ A+ + P Y L+D +G +I E D PASL Sbjct: 7 RFTVLALFALFGTAFSLLAQAQMVPRAPQIDAKGYLLMDATSGQIIVERNADQRLPPASL 66 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTAY+ + L++ IS A + S ++G+ + + + L+ +I++S Sbjct: 67 TKMMTAYIAEAELQKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRGIIIQSG 126 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +VA+AE + +E F MN + LG+ +HFMNA G H+TTA+DMAIL+ Sbjct: 127 NDASVAMAEYIAGSEDAFADLMNQHANRLGMDNSHFMNATGWPAENHFTTAKDMAILARA 186 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I DFP + + K G N N + DG+KTG T +G+ +V+SA + Sbjct: 187 IVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRDPSVDGLKTGHTDEAGYCLVSSAKKDG 246 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 LIAV++G R + S LL+ GF Sbjct: 247 MRLIAVVMGTDSEGARARESQKLLTYGF 274 >gi|333006637|gb|EGK26136.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri VA-6] Length = 269 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 11/225 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQVLKADKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKK 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA Sbjct: 222 RLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGA 264 >gi|253997624|ref|YP_003049688.1| beta-lactamase [Methylotenera mobilis JLW8] gi|253984303|gb|ACT49161.1| Beta-lactamase [Methylotenera mobilis JLW8] Length = 392 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 5/258 (1%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A + I P S+A + Y L D N G+VIA+N PASLTK+MTAY+ F Sbjct: 30 LAHAGAAQIAPPPSLA----VKAYLLKDFNNGYVIAQNNASMRVEPASLTKIMTAYLAFK 85 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K L + +S++A + S + T+D L +I+ S ND ++ +AE + Sbjct: 86 AVKNGHLQLNQTLPVSEHAWKTEGSKMFIEPNKPATVDELLHGMIIVSGNDASITLAEGI 145 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMH 186 +E F Q MN ++ LG+ TH+MNA G+ HYTTA D+A L+ + DFP +Y Sbjct: 146 ASSEPLFAQMMNKEAERLGMKNTHYMNATGLPDPQHYTTAEDLATLAMALIRDFPEEYKR 205 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K K PN N + DGMKTG T ++G+ ++++A + + I+VILGA Sbjct: 206 LYSVKEYAYNNIKQPNRNRLLWLDPNVDGMKTGHTESAGYCLISTAKRDNTRYISVILGA 265 Query: 247 LDRNTRNKVSASLLSMGF 264 R S LL+ GF Sbjct: 266 PTDTARATESQKLLNYGF 283 >gi|307544791|ref|YP_003897270.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] gi|307216815|emb|CBV42085.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] Length = 419 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G VIA++ PD PASLTKLMTAY+V L + + +S+ A Sbjct: 69 WILMDAGSGRVIAQHNPDERLPPASLTKLMTAYLVERELNKGNISPDDLVPVSEKAWRTG 128 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G + + L +I+ S ND +VA+AE L + F MN + LG+ T Sbjct: 129 GSKMFIEVGDRVPVSELLHGIIIVSGNDASVAMAEYLAGGTEPFADIMNQHAARLGMENT 188 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N G+ HY++ARD+A+LS I D+P++ ++ K G PN N + Sbjct: 189 HFVNPTGLPHDNHYSSARDLALLSRHIINDYPKHYSMYRQKHFTYGGIDQPNRNSLLWRD 248 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T A+G+ +V+SA + D LI+V++G R + S LLS GF Sbjct: 249 SSVDGLKTGWTEAAGYCLVSSAKREDMRLISVVMGTDSAEARVQESQKLLSYGF 302 >gi|268590416|ref|ZP_06124637.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] gi|291314330|gb|EFE54783.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] Length = 403 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 13/272 (4%) Query: 4 FLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L+ +A + FP SI A Y L+D N+G V+AE+ D +PASLTK+MT Sbjct: 20 LLMTANIANANETFPNTSIPAAPAIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMT 79 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI--------V 113 +YV+ +K K +T+ +A + N FK S M L ++ + + Sbjct: 80 SYVIGQAIKSGKIGENDIVTVGNDA--WATGNPVFKGSSLMFLKPGDRVSVSQLTRGINL 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+A+ + + FVQ MN LGL THF HG+ G Y++ARDMA++ Sbjct: 138 QSGNDACVAMADYIAGDQANFVQLMNGYVNKLGLKNTHFQTVHGLDAEGQYSSARDMALI 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASA 232 + D P+ ++ K + N N + L DG+KTG T A+G+N+VASA Sbjct: 198 GQALVRDVPEEYAIYKEKEFTFNNIRQTNRNGLLWDKSLTVDGIKTGHTNAAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GD LI+V++G R+ S LL+ GF Sbjct: 258 TEGDMRLISVVMGGKSSKGRDAESKKLLTYGF 289 >gi|293396914|ref|ZP_06641188.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291420385|gb|EFE93640.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 356 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 133/242 (54%), Gaps = 15/242 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D N+G ++AE PD +PASLTK+M++YV+ +K K T +T+ K+A + N Sbjct: 1 MDYNSGKILAEGNPDSRLDPASLTKIMSSYVIGQAIKAGKIKPTDLVTVGKDA--WATGN 58 Query: 94 STFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S M + ++ ++++S ND ++A+A+ + +++ FV MN +K+L Sbjct: 59 PVLRGSSLMFIKPGDRVPVMELNKGIVIQSGNDASIALADYVAGSQESFVSLMNGYAKHL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 GL THF+ HG+ G ++TARDMA+LS + D P + K + N N Sbjct: 119 GLQNTHFLTVHGLDAEGQFSTARDMALLSQALIRDVPDEYALHKEKEFTFNKIRQVNRNR 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W+ + L DG+KTG+T +G N+VASA G LI+V+LGA R S LL+ Sbjct: 179 LLWS--SNLSVDGIKTGYTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTW 236 Query: 263 GF 264 GF Sbjct: 237 GF 238 >gi|15964646|ref|NP_384999.1| hypothetical protein SMc00068 [Sinorhizobium meliloti 1021] gi|307304223|ref|ZP_07583975.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307320528|ref|ZP_07599943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15073824|emb|CAC45465.1| Probable D-alanyl-D-alanine carboxypeptidase [Sinorhizobium meliloti 1021] gi|306893804|gb|EFN24575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306902691|gb|EFN33284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 409 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 134/228 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V++ PD +PASLTK+MT Y+ F L + TP+ +S A+ PP+ Sbjct: 29 VVDARTGRVLSAENPDTLHHPASLTKMMTLYMTFEALHRGQIAWKTPVPVSATAARKPPT 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+T++ A+ +IV+SAND A A+AE L +E+ F + MN ++ LG++ T F Sbjct: 89 KLGVKAGGTITVEEAVYGMIVRSANDAAAAMAERLGGSEEGFARMMNAKARQLGMNRTFF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMA L+ + +P+ F ++ +G+ N + + G Sbjct: 149 VNASGLPASEQVTTARDMARLAVALMRHYPREYRLFSVQSFAFRGRVIRGHNNLMYRYQG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASG+N+V++ ++ LI V+LG +R++ A+LL Sbjct: 209 MDGIKTGYTRASGYNLVSAVNDRNRRLIGVVLGGRSARSRDEKMAALL 256 >gi|261343387|ref|ZP_05971032.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] gi|282568528|gb|EFB74063.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] Length = 401 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G ++A ++PD +PASLTK+MT+YVV +K K +T+S+ A + Sbjct: 43 FVLMDYDSGKILASSHPDERLDPASLTKIMTSYVVGQAVKAGKITPQDMVTVSEAA--WA 100 Query: 91 PSNSTFKKGSTMTLD-----NALKL---LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L + L L ++++S ND ++A+AE + +++ FV MN+ Sbjct: 101 TGNPVLKGSSLMFLKPKDQVSVLDLNKGIVIQSGNDASIALAEYVAGSQESFVDLMNSYV 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +GL+ THF HG+ G Y+TARDMA+L+ + D P + K + PN Sbjct: 161 QKIGLTNTHFKTVHGLDSEGQYSTARDMAVLAQALIRDVPDEYILHKEKEFTFNNIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ L DG+KTG T +G N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLWSQN--LKVDGVKTGHTSGAGHNLVASATDGPMRLISVVLGAPSDKVRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|92113673|ref|YP_573601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] gi|91796763|gb|ABE58902.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Chromohalobacter salexigens DSM 3043] Length = 359 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 126/234 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G ++ E+ D PASLTK+MTAY+V + TIS+NA Sbjct: 13 WVLMDADSGKILVEHNADKELPPASLTKMMTAYIVEREIDAGNISGDDEATISENAWRTG 72 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S GS +++DN L+ ++++S ND +VA+AE + +E F MN + + L T Sbjct: 73 GSRMFLNPGSKVSIDNLLRGVVIQSGNDASVALAEHIAGSEDAFADLMNQQAARMKLEHT 132 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN G+ HY++A D+A+++ I D+P + + K + PN N + Sbjct: 133 HFMNPTGLPHEEHYSSAHDLAVIAQHIIKDYPDHYEVYSEKYFTWNDIRQPNRNRLLWRD 192 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A+G+ +VASA + L+AV++G R + + LLS GF Sbjct: 193 PNVDGLKTGHTEAAGYCLVASAKKDGTRLVAVVMGTDSDEARAQETQKLLSYGF 246 >gi|121591022|ref|ZP_01678339.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121547132|gb|EAX57264.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] Length = 386 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|304316784|ref|YP_003851929.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778286|gb|ADL68845.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 381 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 150/286 (52%), Gaps = 9/286 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E PAS+TK+MT +V L K T + S++A + + Sbjct: 38 LMDASTGKVLYEKNSHEELPPASVTKVMTMLLVMEALDSGKIKTTDKVVTSEHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ LK + + SAND +VA+AE + +E+KFV+ MN +K LG T+F Sbjct: 98 QIYLEVGEEMTVDDLLKSVAMNSANDASVALAEYISGSEEKFVEEMNKRAKELGAKNTNF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 NA G+ + HYT+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNASGLPEKDHYTSVYDIALISREL-VKHKGIFKYLTDKIDSVRNGKFSLANTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADG+KTG T + + + A+A +GD IAVI GA D NTR K ++ LL GF N + Sbjct: 217 QGADGIKTGSTSEALYCLSATAKRGDTRFIAVIFGAPDSNTRFKEASKLLDYGFANFETK 276 Query: 271 K-----KINYIIKDFY-QQNLSNEVPNISEEVCTTQKEIINYNTQM 310 K KI +K +Q+ N V N E V + E N ++ Sbjct: 277 KVVEAGKIYGTVKVLKGEQDYINAVANTDEYVLLKKGEAKNIKQEI 322 >gi|153830932|ref|ZP_01983599.1| penicillin-binding protein 5 [Vibrio cholerae 623-39] gi|148873587|gb|EDL71722.1| penicillin-binding protein 5 [Vibrio cholerae 623-39] Length = 354 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|254427252|ref|ZP_05040959.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881] gi|196193421|gb|EDX88380.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881] Length = 386 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 128/234 (54%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G VI E+ + PASLTK+MTAY+V L++ IS A + Sbjct: 41 YLLMDAASGQVIVEHNAEQRLPPASLTKMMTAYIVEEELQKGNISEKDMAPISVQAWQMG 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + + + L+ +I++S ND +VA+AE + +E F MN + LG+ ++ Sbjct: 101 GSRMFVREGTRVPVGDLLRGIIIQSGNDASVAMAEYIAGSEDAFADLMNQHANRLGMDSS 160 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G H+TTA+DMAIL+ I DFP + + K G N N + Sbjct: 161 HFMNATGWPAENHFTTAKDMAILARAIVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRD 220 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA + + LIAV++G + R + S LL+ GF Sbjct: 221 PTVDGLKTGHTDEAGYCLVSSAKKDNMRLIAVVMGTASESARARESQKLLTYGF 274 >gi|294142181|ref|YP_003558159.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12] gi|293328650|dbj|BAJ03381.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12] Length = 390 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 IA T Y L+D NTG +I E NPASLTK+MT+YV+ +K + Sbjct: 31 IAPTVAAKAYVLMDFNTGQIITEENAYESLNPASLTKMMTSYVIGQEMKAGNISPEDEVV 90 Query: 82 ISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +SK A +P S+ F + G +T+D+ +I++S ND VA+AE + TE FV M Sbjct: 91 VSKKAWSKNFPDSSKMFIEVGKHVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLM 150 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N+ +K LG+ +HF NAHG+ H +TA DMAIL + D P+ + K G Sbjct: 151 NSWAKQLGMKDSHFENAHGLDATNHKSTAYDMAILGAALIRDVPKEYTLYSQKSFTYNGI 210 Query: 199 KYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 K N N W + DG+KTG T +G+N+V SA + L++V++G + R Sbjct: 211 KQYNRNGLLW--DKSMKVDGIKTGHTSGAGYNLVTSATKDGMRLVSVVMGTRSESARKAE 268 Query: 256 SASLLSMGF 264 S LL+ GF Sbjct: 269 SKKLLNYGF 277 >gi|114561878|ref|YP_749391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina NCIMB 400] gi|114333171|gb|ABI70553.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina NCIMB 400] Length = 403 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G VIAE NPASLTK+MT+YV+ ++ L + I+KNA Sbjct: 53 YVLMDYNSGRVIAEENAYESLNPASLTKMMTSYVIGHEIRVGNISLDDDVAITKNAWAKN 112 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 113 FPDSSKMFIEVGKTVKVHDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDLMNSWAKQLGM 172 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMAIL + D P+ + K G K N N Sbjct: 173 KDSYFENSHGLDSENHKTTAYDMAILGAALIRDVPEEYKVYSEKSFTYNGIKQYNRNGLL 232 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+V+S LI+V++G + R S LL+ GF Sbjct: 233 WDKS--LNVDGIKTGHTSGAGYNLVSSGTSEGMRLISVVMGTSSESARKAESKKLLNYGF 290 >gi|260774871|ref|ZP_05883772.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260609126|gb|EEX35284.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 392 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++AE + +PASLTK+MT+YV+ L+ L +TISKNA Sbjct: 43 YVLMDYNSGKILAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ ++ + +IV+S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVEELNRGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRIYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANARKSESKKLLSYGF 280 >gi|91786161|ref|YP_547113.1| penicillin-binding protein 6 [Polaromonas sp. JS666] gi|91695386|gb|ABE42215.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Polaromonas sp. JS666] Length = 400 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 133/248 (53%), Gaps = 14/248 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++A D P PASLTKLMT Y+VF LK KK L +S+ A + P Sbjct: 42 YLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKIDLKQTFGVSERAWKMP 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ +K ++V+S ND +A+AE + T + FV+ MN +K LG+ +T Sbjct: 102 GSRMFIDPKMQVPVEDLIKGMVVQSGNDATMALAEGVGGTAEHFVRLMNEQAKALGMKST 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN-TNWAVGT 209 + N G+ + GH TTARD++IL+ R+ DFP Y+ Y IK G N TN Sbjct: 162 AYKNPEGLTEPGHTTTARDLSILATRLMRDFPDYIGYSAIKKYRYPGTPAANDTNRNTLL 221 Query: 210 FLG--ADGMKTGFTCASGFNIVASAIQ-----------GDQSLIAVILGALDRNTRNKVS 256 F DG+KTG T A+G+ ++A+A + G + L+A++LG + R S Sbjct: 222 FRDPTVDGLKTGHTEAAGYCMIATARRDFPNLGVGGAPGGRRLLAIVLGTSSDSARANES 281 Query: 257 ASLLSMGF 264 LL+ G+ Sbjct: 282 QKLLNWGY 289 >gi|153213833|ref|ZP_01949039.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|229510878|ref|ZP_04400357.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229517999|ref|ZP_04407443.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229608471|ref|YP_002879119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254848079|ref|ZP_05237429.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|124115667|gb|EAY34487.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|229344714|gb|EEO09688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229350843|gb|EEO15784.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229371126|gb|ACQ61549.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254843784|gb|EET22198.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] Length = 391 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|332097261|gb|EGJ02244.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74] Length = 268 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 127/227 (55%), Gaps = 15/227 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + +++ F+ MN + Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKDVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGA 264 >gi|120555321|ref|YP_959672.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinobacter aquaeolei VT8] gi|120325170|gb|ABM19485.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Marinobacter aquaeolei VT8] Length = 391 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G VI E+ + PASLTK+MTAY+V L E + ++ + IS A Sbjct: 45 WVLMDPLSGRVIMEHNSNERLPPASLTKMMTAYIVERELDEGRISMSDMVPISVKAWRTE 104 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + ++G+++++++ LK +I++S ND +VA+AE + +E FV MN ++ LG+ T Sbjct: 105 GSRTFVQEGTSVSVEDLLKGVIIQSGNDASVALAEFVAGSEGAFVDIMNQQAQLLGMKDT 164 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF NA G+ H++TA D+A+L+ I D+P+ + K + PN N + Sbjct: 165 HFENATGLPSADHFSTAYDLAVLARHIIQDYPENYPLYAQKHFTYNNIRQPNRNSLLWRD 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTD 269 DG+KTG T +G+ +VASA +G+ LIA ++G R + +L+ GF Y +T+ Sbjct: 225 DSVDGLKTGHTEEAGYCLVASAKRGETRLIATVMGTSSSEARAQEVQKMLNYGFRYFETE 284 Query: 270 R 270 R Sbjct: 285 R 285 >gi|153826135|ref|ZP_01978802.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2] gi|149740158|gb|EDM54317.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|153817207|ref|ZP_01969874.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457] gi|227081121|ref|YP_002809672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229505452|ref|ZP_04394962.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|298498936|ref|ZP_07008743.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] gi|126512241|gb|EAZ74835.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457] gi|227009009|gb|ACP05221.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229357675|gb|EEO22592.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|297543269|gb|EFH79319.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|222147779|ref|YP_002548736.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium vitis S4] gi|221734767|gb|ACM35730.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium vitis S4] Length = 442 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 129/237 (54%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG VIA D P +PASLTK+MT Y+VF ++ +P+ SK AS PP+ Sbjct: 29 LLDARTGRVIASENADMPNHPASLTKMMTIYMVFDAIRRGTLSWDSPVPFSKYASSRPPT 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G +T+ A+ ++ SAND A A+AE L TE+ F M ++ LG+ T F Sbjct: 89 KLRLKPGEEITVREAVLGMVTLSANDAAAAMAEKLGGTEENFAAMMTAKARQLGMPNTTF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDM+ L + DFP+ F + +G+ N + + G Sbjct: 149 VNASGLPDDRQITTARDMSTLGVALLRDFPRDYALFSTRSFAFRGRTINGHNNLMYRYKG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTG+T ASG+N+V++ G + +I VI+G +R+ + A L++ +D Sbjct: 209 MDGIKTGYTNASGYNLVSAVADGKRRVIGVIMGGRSGASRDNLMAQLITKNIGKASD 265 >gi|121728034|ref|ZP_01681072.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|147675663|ref|YP_001216421.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229512959|ref|ZP_04402425.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|229523260|ref|ZP_04412667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229529956|ref|ZP_04419346.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|254225715|ref|ZP_04919321.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|254285618|ref|ZP_04960582.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|121629663|gb|EAX62083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|125621723|gb|EAZ50051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|146317546|gb|ABQ22085.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|150424480|gb|EDN16417.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|227012764|gb|ACP08974.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229333730|gb|EEN99216.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229339623|gb|EEO04638.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229349852|gb|EEO14806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|327483673|gb|AEA78080.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|220935870|ref|YP_002514769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp. HL-EbGR7] gi|219997180|gb|ACL73782.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp. HL-EbGR7] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++D +G V+AE D PASLTKLMTAY+VF ++ L + IS+ A Sbjct: 40 YLIMDHLSGMVLAERAADERVEPASLTKLMTAYLVFQEIERGTISLDDEVRISERAWRTG 99 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ++ + + + L + L+ LI++S ND +VA+AE + TE FV MN ++ LG+ Sbjct: 100 MQGASRMFIEVNNRVRLQDLLRGLIIQSGNDASVALAEHVGGTEGAFVDLMNAQARALGM 159 Query: 148 SATHFMNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 THF N+HG+ + YT+ARDMA+L+ + DFPQ+ Y+ + G N N Sbjct: 160 VNTHFTNSHGLPTEEAQYTSARDMALLASALIRDFPQHYGYYSERNFTFNGITQSNRNLL 219 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + DG+KTG+T SG+N+V+S Q L+AV++G Sbjct: 220 LWRDSQVDGLKTGWTRTSGYNLVSSREQEGMRLVAVVMG 258 >gi|297581327|ref|ZP_06943251.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] gi|297534643|gb|EFH73480.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|262395893|ref|YP_003287746.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|262339487|gb|ACY53281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 389 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E NPASLTKLMTAYV + L + IS+NA Sbjct: 40 YVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEINAGNITLDDEVVISRNAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + L+V+S ND +VAIAE + +E FV MN+ + L L Sbjct: 100 FPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLEL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 160 NNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ SA QGD LIAV++GA N R S LLS GF Sbjct: 220 RDRSMNVDGMKTGYTSGAGYSLATSATQGDMRLIAVVMGAKSENIRESESKQLLSYGF 277 >gi|163857632|ref|YP_001631930.1| penicillin-binding protein precursor [Bordetella petrii DSM 12804] gi|163261360|emb|CAP43662.1| penicillin-binding protein precursor [Bordetella petrii] Length = 371 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 7/243 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + LLD +G +A D PASLTK+MTAY+VF L++ + +T+S A + Sbjct: 20 WMLLDATSGQEMASFNADTRVEPASLTKVMTAYLVFQALRDGRLSTQQLVTVSTRAWKVA 79 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S + G +++++ L L+V+S ND A+ +AE++ + + FVQ MN + +GL Sbjct: 80 PGSSKMFLEPGKRVSVNDLLFGLLVQSGNDAAIVLAEAVSGSVEAFVQRMNQQAAQMGLR 139 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAV 207 THF + HG+ G Y+TARD+A+L+ R+ D+P Y Y + PN N + Sbjct: 140 DTHFASPHGLPDPGTYSTARDLALLARRLVRDYPDLYKTYDSARTFTYNNISQPNRNRLL 199 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGD----QSLIAVILGALDRNTRNKVSASLLSMG 263 DG+KTG T A+G+ ++ASA + D + LI+V++G R + S LL+ G Sbjct: 200 WLDPSVDGLKTGHTDAAGYCLIASAERPDGQSRRRLISVVMGTASDKLRTEESRVLLNWG 259 Query: 264 FYN 266 F N Sbjct: 260 FQN 262 >gi|170728041|ref|YP_001762067.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC 51908] gi|169813388|gb|ACA87972.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC 51908] Length = 390 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/274 (35%), Positives = 141/274 (51%), Gaps = 13/274 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASL 56 R +I L++ F F + T P + L+D NTG VIAE NPASL Sbjct: 6 RPLKSLILATSLASSFVFAAPVVTPNAPTVAAKAFVLMDYNTGQVIAEENAYESLNPASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIV 113 TK+MT+YV+ +K +TISK A +P S+ F + G +T+D+ +I+ Sbjct: 66 TKMMTSYVIGHEIKVGNISPNDQVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNHGIII 125 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMAIL Sbjct: 126 QSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSENHKTTAYDMAIL 185 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVA 230 + D P+ ++ K G K N N W + DG+KTG T +G+N+V Sbjct: 186 GAALIRDVPEEYVLYKKKSFTYNGIKQYNRNGLLWDKS--MHVDGIKTGHTSGAGYNLVT 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA + L+AV++G R S +L+ GF Sbjct: 244 SATKDGMRLVAVVMGTKSEAARKAESKKILNYGF 277 >gi|157369871|ref|YP_001477860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] gi|157321635|gb|ABV40732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 401 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++AE D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYNSGKILAEGNADTRLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M + ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 101 TGNPALRGSSLMFIKPGDQVPVMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL THF+ HG+ G Y+TARDMA+L + D P + K + N Sbjct: 161 KSLGLQNTHFLTVHGLDAEGQYSTARDMALLGQALIRDVPDEYALHKEKEFTFNKIRQVN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG+T +G N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLWS--TNLSVDGIKTGYTGGAGHNLVASATDGPMRLISVVLGAPSDRIRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|261493869|ref|ZP_05990381.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495135|ref|ZP_05991599.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309205|gb|EEY10444.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310471|gb|EEY11662.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 392 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 132/243 (54%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G V+ PD PASLTK+MT+YVV LK K + +T+++N A + Sbjct: 40 YILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F S +++ +K LI+ S ND +VA+AE + ++ F+ MN ++ GL Sbjct: 100 FPGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 THF HG+ Y++ARDMAI+ I D P+ + K + KK PN N Sbjct: 160 KNTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASAI + LI+V++G R S LL G Sbjct: 220 LW--DKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|229525558|ref|ZP_04414963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] gi|229339139|gb|EEO04156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] Length = 391 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|229592798|ref|YP_002874917.1| putative cell division-like protein [Pseudomonas fluorescens SBW25] gi|229364664|emb|CAY52594.1| putative cell division-related protein [Pseudomonas fluorescens SBW25] Length = 385 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 130/235 (55%), Gaps = 2/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G+V+ E+ D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 WVLMDAASGNVLVESNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +T+ + L +I++S ND +VA+AE + +E F MN T +LG++ + Sbjct: 99 GSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTVADLGMTNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 HFMN G+ HY++A DMAIL+ I+ D Y Y Q K K PN N + Sbjct: 159 HFMNPTGLPNPEHYSSAHDMAILARAIIRVDPVHYAIYSQ-KEFFWNNIKQPNRNLLLWR 217 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ Q LIAV+ G R + LL+ GF Sbjct: 218 DKTVDGLKTGHTDEAGYCMVSSAVRDGQRLIAVVFGTNSEQARAAETQKLLTYGF 272 >gi|226942990|ref|YP_002798063.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ] gi|226717917|gb|ACO77088.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ] Length = 404 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 128/234 (54%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ E+ + PASLTKLMTAY+ +K + + +T+S+ A Sbjct: 58 YLLMDAASGQVLIESNGEQRLPPASLTKLMTAYIATLEIKRGQIKESDLVTVSERAWRTG 117 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ +++ + L +I++S ND +VA+AE + +E F MN T++ LGLS T Sbjct: 118 GSRMFIQVGTQVSVSDLLHGIIIQSGNDSSVALAEHIAGSEDAFADMMNATAQRLGLSNT 177 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMNA G+ HY++A DMA L+ I D P + + K K PN N + Sbjct: 178 HFMNATGLPHAEHYSSAHDMARLARAIIYDDPAHYAIYAQKEFFWNNIKQPNRNLLLWRD 237 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIAV+ G R + LL+ GF Sbjct: 238 KTVDGLKTGHTEEAGYCLVASAVRDGQRLIAVVFGTKSEQARAAETQKLLTYGF 291 >gi|212709668|ref|ZP_03317796.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM 30120] gi|212687479|gb|EEB47007.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM 30120] Length = 401 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G ++A + PD +PASLTK+MT+YVV +K K +T+S+ A + Sbjct: 43 FVLMDYNSGKILASSNPDERLDPASLTKIMTSYVVGQAVKAGKITPQDMVTVSEAA--WA 100 Query: 91 PSNSTFKKGSTMTLD-----NALKL---LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L + L L ++++S ND ++A+AE + +++ FV MN Sbjct: 101 TGNPILKGSSLMFLKPKDRVSVLDLNKGVVIQSGNDASIALAEHVAGSQESFVDLMNGYV 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +GL+ THF HG+ G Y+TARDMA+L+ + D P + K + PN Sbjct: 161 QKIGLTNTHFKTVHGLDSDGQYSTARDMAVLAQALIRDVPDEYVLHKEKEFTFNNIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ L DG+KTG T +G N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLWSQN--LKVDGVKTGHTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFAESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|319785898|ref|YP_004145373.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1] gi|317464410|gb|ADV26142.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1] Length = 407 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 135/246 (54%), Gaps = 6/246 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + ++D TG V+A D PAS+TK+MT+YV+ + + + + +S+ A Sbjct: 58 WLVMDYATGQVLAGENVDEQVEPASITKVMTSYVIAAEMAAGRVKPDDQVLMSERAWREG 117 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L K + V+S ND A+A+AE + T++ F MN+ + + Sbjct: 118 GARTDGSFSGFPVNQTAPLVEMEKGMAVQSGNDAAIALAEHVAGTQEAFADLMNSYAAKI 177 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ +HF+NAHG+ GHY+TARD+A+L D+P+ Y +IK + G PN N Sbjct: 178 GMKNSHFVNAHGLSAEGHYSTARDLALLGRAFVRDYPEQYGYNKIKEFTVNGITQPNRNL 237 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF- 264 + DG+KTG +G+ +++SA +GDQ L+AV++G R S +LL+ GF Sbjct: 238 LLWRDSSVDGIKTGHHSKAGYCLMSSAQRGDQRLVAVLMGGASERQRADDSLALLNWGFR 297 Query: 265 YNKTDR 270 +++T R Sbjct: 298 FHETHR 303 >gi|238789672|ref|ZP_04633455.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] gi|238722225|gb|EEQ13882.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] Length = 401 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYDSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T+FM HG+ G Y+TA DMA+L + D P+ + K + N N Sbjct: 163 LGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W T L DGMKTG+T +G N+VASA G LI+V+LGA R S LL+ Sbjct: 223 RLLW--NTNLNVDGMKTGYTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|242239720|ref|YP_002987901.1| beta-lactamase [Dickeya dadantii Ech703] gi|242131777|gb|ACS86079.1| Beta-lactamase [Dickeya dadantii Ech703] Length = 401 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 147/276 (53%), Gaps = 22/276 (7%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 V++A + L+ +F S AE P + L+D +G V+AE D +PASLTK+ Sbjct: 13 VVMAASFLT-LFSPSSYAEQPSAPPQIDAKAFILMDATSGRVLAELNADERLDPASLTKI 71 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL---DNAL-----KLL 111 MT+YVV +K K +T+ +A + N + + S M L D L K + Sbjct: 72 MTSYVVGQAIKAGKIKPDDRVTVGSDA--WANGNPSLRGSSLMFLKPGDQILVSDLNKGM 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + +++ F+ MN + +LGLS +HF+ HG+ G Y+TARDM+ Sbjct: 130 VIQSGNDASIALADYVAGSQQAFISLMNQYAASLGLSNSHFLTVHGLDTPGQYSTARDMS 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNI 228 L+ + D P K PN N W+ L DG+KTGFT +G+N+ Sbjct: 190 RLTQALIRDLPDEYALHSEKAFTFNKINQPNRNRLLWS--ATLRVDGVKTGFTHGAGYNL 247 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V+SA++G LIAV+LG+ R + S LL+ GF Sbjct: 248 VSSAVEGGTRLIAVVLGSSSDAIRFRESEKLLAWGF 283 >gi|317491121|ref|ZP_07949557.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920668|gb|EFV41991.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 403 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ +K K +T+ ++A + Sbjct: 49 YILIDYNSGKVLAESNADARRNPASLTKMMTSYVIGQAMKAGKFTENDVVTVGQDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNA----LKLLI----VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L + LLI ++S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVPVSLLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T + DG+KTG T ++GFN+VASA +G LI+ +LG R S LL+ Sbjct: 227 RNGLLWDTSMNVDGIKTGHTESAGFNLVASATEGQMRLISAVLGGHTSKGRESESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|119946648|ref|YP_944328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychromonas ingrahamii 37] gi|119865252|gb|ABM04729.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychromonas ingrahamii 37] Length = 406 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V++EN D NPASLTK+MT+Y++ +K +TIS+ A Sbjct: 50 YLLIDFNSGKVLSENNSDVRLNPASLTKMMTSYIIGQEIKSGNLSPDDKVTISEKAWSKN 109 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++ + + +I++S ND VA+AE + +E F MN+ + LG+ Sbjct: 110 FPESSKMFIEVGKEVSVADLNRGIIIQSGNDACVAMAEYIAGSEGAFADLMNSWAAQLGM 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + T F N+HG+ GHYTT DMAIL+ + D P + K + G PN N Sbjct: 170 NNTQFKNSHGLTAEGHYTTPHDMAILAQALINDVPDEYLIYSEKSFKFNGIDQPNRNALL 229 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++++SA + LI+V++G + R S LL+ GF Sbjct: 230 WDKS--LDVDGIKTGHTNEAGYSLISSATKDGMRLISVVMGTRSTSARLTESKKLLNWGF 287 >gi|187922505|ref|YP_001894147.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans PsJN] gi|187713699|gb|ACD14923.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans PsJN] Length = 409 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A PD PASLTKLMTAY+VF L+ KK + + S+ Sbjct: 55 WVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +I++S ND A+A+AE + +E +FV MNN ++ LG+ Sbjct: 115 TDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNNEAQKLGMK 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K K PN N + Sbjct: 175 NTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ K N ++ Sbjct: 295 YGYSAYDTVRLYKANQVV 312 >gi|146310988|ref|YP_001176062.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter sp. 638] gi|145317864|gb|ABP60011.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 400 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K L +TI K+A + Sbjct: 43 WILMDYASGKVLAEGNADEQLDPASLTKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + ++ F+ MN ++ Sbjct: 103 NPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQR 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN N Sbjct: 163 LGLTKTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + + DGMKTG T +G+N+VASA QGD LI+V+LG R S LL+ Sbjct: 223 RLLWS--SNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|288549405|ref|ZP_06390668.1| hypothetical protein ENTCAN_05367 [Enterobacter cancerogenus ATCC 35316] gi|288318989|gb|EFC57927.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 408 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTKLMT+YVV LK K L +T+ K+A + Sbjct: 50 WILMDYASGKVLAEGNADEKLDPASLTKLMTSYVVGQALKAGKIKLDDMVTVGKDA--WA 107 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ +I++S ND +A+A+ + ++ F+ MN + Sbjct: 108 TGNPALRGSSVMFLKPGDRVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN Sbjct: 168 QRLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 227 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + + DGMKTG T +G+N+VASA QGD LI+V+LG R S L Sbjct: 228 RNRLLWS--SNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKL 285 Query: 260 LSMGF 264 L+ GF Sbjct: 286 LTWGF 290 >gi|323498490|ref|ZP_08103483.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] gi|323316379|gb|EGA69397.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] Length = 385 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E D NPASLTKLMTAYV + L +TIS+ A Sbjct: 36 YILMDYHTGAVLVEKNADSQLNPASLTKLMTAYVAGQEVANGNIGLDDQVTISERAWAKN 95 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + L + + LIV+S ND +VAIAE + +E FV MN+ + LGL Sbjct: 96 FPDSSKMFIEVGTQVALSDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAAKLGL 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F N HG+ Y+T RD+A LS I D P + + G N N + Sbjct: 156 ENSAFSNPHGLDSDALYSTPRDIATLSQAIIRDLPTIYPLYSERAFTYNGITQYNRNGLL 215 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ SA G+ LI+V++G+ +R S LLS GF Sbjct: 216 RDRSLHVDGMKTGYTSGAGYSLATSATNGNMRLISVVMGSSSTKSRESESKQLLSYGF 273 >gi|313202207|ref|YP_004040865.1| beta-lactamase [Methylovorus sp. MP688] gi|312441523|gb|ADQ85629.1| Beta-lactamase [Methylovorus sp. MP688] Length = 378 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D N+ IA+ D PASLTKLMTAY+ F +K LT + IS A + Sbjct: 35 YVLRDFNSQSTIAQQAGDERVEPASLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVE 94 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D L +I++S ND ++A+AE + TE+ F MN + LG+ T Sbjct: 95 GSKMFVEPNRPVTVDELLHGMIIQSGNDASIALAEGIAITEEAFADLMNKEAARLGMKNT 154 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGT 209 HFMNA G+ HYTTA D+++L+ + DFP+ Y + K PN N + Sbjct: 155 HFMNATGLPDPQHYTTAYDLSLLASALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWL 214 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T +G+ +++SA +G+ LI+V+LG + R S LL+ GF Sbjct: 215 DPYVDGMKTGHTKTAGYCLISSAKRGETRLISVVLGTPSDSARATESQKLLNYGF 269 >gi|297181495|gb|ADI17682.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0130_23I23] Length = 380 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 145/264 (54%), Gaps = 13/264 (4%) Query: 19 FLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 FLSI + +P Y L + NT V+A D P PASLTKLMT+YVV ++K Sbjct: 11 FLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYVVADYIK 70 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 E LT IS NA + P S ++ + + + +K +I++S ND +VA+AE + + Sbjct: 71 EDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALAEHVAGS 130 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E+ F MN ++ LG+ T F NA G+ + T+A D+A+L+ + +FP + ++ Sbjct: 131 EENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDHYRHYSQ 190 Query: 191 KGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 K G N N W T + DG+KTG+T ++G+ +V SA++ L+AV+LG+ Sbjct: 191 KSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVAVVLGSE 250 Query: 248 DRNTRNKVSASLLSMGF-YNKTDR 270 D N VS +L+ GF Y KT++ Sbjct: 251 DDKRFNDVS-NLMVYGFRYFKTEK 273 >gi|254000240|ref|YP_003052303.1| beta-lactamase [Methylovorus sp. SIP3-4] gi|253986919|gb|ACT51776.1| Beta-lactamase [Methylovorus sp. SIP3-4] Length = 378 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D N+ IA+ D PASLTKLMTAY+ F +K LT + IS A + Sbjct: 35 YVLRDFNSQSTIAQQAGDERVEPASLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVE 94 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D L +I++S ND ++A+AE + TE+ F MN + LG+ T Sbjct: 95 GSKMFVEPNRPVTVDELLHGMIIQSGNDASIALAEGIAITEEAFADLMNKEAARLGMKNT 154 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGT 209 HFMNA G+ HYTTA D+++L+ + DFP+ Y + K PN N + Sbjct: 155 HFMNATGLPDPQHYTTAYDLSLLASALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWL 214 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T +G+ +++SA +G+ LI+V+LG + R S LL+ GF Sbjct: 215 DPYVDGMKTGHTKTAGYCLISSAKRGETRLISVVLGTPSDSARATESQKLLNYGF 269 >gi|329120772|ref|ZP_08249433.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis ATCC BAA-1200] gi|327460142|gb|EGF06480.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis ATCC BAA-1200] Length = 432 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 130/230 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +G ++ D P PASLTKLMTAY+ F L+ K T +T S+ A Sbjct: 84 YLVQDLQSGQILTGRDLDKPVEPASLTKLMTAYLAFKALESGKLNATDTLTPSEKAWRAE 143 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G + + + LK LIV+S ND A+ +AE+L +E+ F + MN +K LG++ T Sbjct: 144 GSRMFLNAGKPVAVGDLLKGLIVQSGNDAAITLAEALGGSEEGFAKMMNAEAKRLGMNGT 203 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF NA G+ GH+TT RD+AIL+ I D+P+Y + ++ + + PN N + Sbjct: 204 HFTNATGLPGDGHFTTVRDLAILAAAIIRDYPKYYPIYSMQSFKYNNIEQPNRNLLLYRD 263 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T ++G+N+VAS+ + + +++V++G R S+ LL Sbjct: 264 PNVDGLKTGHTNSAGYNLVASSKRNGRRVVSVVVGTESIEARAGESSKLL 313 >gi|253687572|ref|YP_003016762.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822396|ref|YP_003260502.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium wasabiae WPP163] gi|251754150|gb|ACT12226.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606409|gb|ACX88895.1| Beta-lactamase [Pectobacterium wasabiae WPP163] Length = 403 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N TF+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G +++ARDMA++ + D P+ ++ K + PN Sbjct: 167 KALGLQNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTG T ++GFN+VASA +G LI+ +LG + R S L Sbjct: 227 RNGLLWD--SSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|50120239|ref|YP_049406.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium atrosepticum SCRI1043] gi|49610765|emb|CAG74210.1| D-alanine carboxypeptidase [Pectobacterium atrosepticum SCRI1043] Length = 403 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N TF+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G +++ARDMA++ + D P+ ++ K + PN Sbjct: 167 KALGLQNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + + L DG+KTG T ++GFN+VASA +G LI+ +LG + R S LL+ Sbjct: 227 RNGLLWDSSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|311278994|ref|YP_003941225.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308748189|gb|ADO47941.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 395 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 151/327 (46%), Gaps = 35/327 (10%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I+ A ++ P + + L+D TG ++ NPASLTKLMT YVV Sbjct: 23 ISCAFAADALPITVSPPAIQAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDR 82 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALKLLIVKSANDI 119 + +K +T+ +A + N F K G +T+ + + LIV S ND Sbjct: 83 AIDSRKITPDDMVTVGHDA--WAKGNPVFDGSSLMFLKPGDRLTVRDLSRGLIVDSGNDA 140 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+A+ + + +FVQ MN + LGL THF HG+ G +++A D+A+LS I Sbjct: 141 CVALADYVAGGQPQFVQLMNGYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIH 200 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 P + H + K L G N N W + DG+KTG T +GFN++ASA+ G+ Sbjct: 201 GEPDFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGE 258 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYN-----------KTDRKKINYIIK------- 278 + LIAV++GA R + + LL G N + ++I Y K Sbjct: 259 RRLIAVVMGAESAKGREEQARKLLHWGQQNFDTVQILHSGKQVGSERIWYGDKEQIRLGT 318 Query: 279 --DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ EVPNI + KE+ Sbjct: 319 DQDFWLALPKAEVPNIKAKYVLDAKEL 345 >gi|297180929|gb|ADI17133.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0070_03O15] Length = 370 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 138/244 (56%), Gaps = 5/244 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L + NT V+A D P PASLTKLMT+YVV ++KE LT IS NA + P Sbjct: 21 YILYEPNTKKVLASFNADAPVEPASLTKLMTSYVVADYIKEDFIDLTDTPKISINAWKTP 80 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++ + + + +K +I++S ND +VA+AE + +E+ F MN ++ LG+ T Sbjct: 81 GSRMFIRESTKVPVSELIKGMIIQSGNDASVALAEHVAGSEENFSYLMNEYARELGMENT 140 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 F NA G+ + T+A D+A+L+ + +FP + ++ K G N N W Sbjct: 141 SFNNASGLPDPLNVTSANDLAVLTGELIKNFPDHYRHYSQKSFTYAGIAQKNRNQLLWRD 200 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YN 266 T + DG+KTG+T ++G+ +V SA++ L+AV+LG+ D N VS +L+ GF Y Sbjct: 201 NTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVAVVLGSEDDKRFNDVS-NLMVYGFRYF 259 Query: 267 KTDR 270 KT++ Sbjct: 260 KTEK 263 >gi|254491459|ref|ZP_05104638.1| beta-lactamase, putative [Methylophaga thiooxidans DMS010] gi|224462937|gb|EEF79207.1| beta-lactamase, putative [Methylophaga thiooxydans DMS010] Length = 382 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D ++G V+AE D PAS+TKLMT+YVV L L + IS+ A Sbjct: 39 YVLTDYDSGRVLAEENADERLPPASITKLMTSYVVSHELHAGNIQLDDEVLISEKAWRMV 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S + + ++++ L+ +IV+S ND AVA+AE + +E+ F Q MN ++ LG+ T Sbjct: 99 GSRSFIEVNTKVSVEALLRGMIVQSGNDAAVALAEHIAGSEETFAQMMNQYAQQLGMYGT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 ++ NA G+ HYTTARD+A+LS + DFP + ++ K N N + Sbjct: 159 NYRNATGLPDPDHYTTARDIAVLSAALIRDFPAHYEWYSEKEYTYNDITQHNRNKLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ + ASA + LI+V+LG N R + + L + GF Sbjct: 219 NSVDGLKTGHTEEAGYCLAASAKRSGMRLISVVLGTRSENARAQETQKLFNYGF 272 >gi|24372747|ref|NP_716789.1| D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1] gi|24346818|gb|AAN54234.1|AE015560_7 D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1] Length = 390 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +IAE NPASLTK+MT+YV+ +K +TISKNA Sbjct: 40 YVLMDYYSGQIIAEENAYESLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKN 99 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G T+ + + + +I++S ND VA+AE + TE FV MN+ SK LG+ Sbjct: 100 FSDSSKMFIEVGKTVKVSDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMA+L + D P+ + K G K N N Sbjct: 160 RDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G R S LL+ GF Sbjct: 220 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 277 >gi|319778852|ref|YP_004129765.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9] gi|317108876|gb|ADU91622.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9] Length = 430 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 131/236 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G +IA+ PD PASLTKLMT+ +VF +K+K+ L + +S+ A + Sbjct: 89 WIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERAWKTG 148 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +T+ L+ +IV+S ND ++ +AES+ T FV+ MN++ + + + Sbjct: 149 GSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFHMLNS 208 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF + G+ YTTARD+++L+ I DFPQ+ HYF + NTN +G Sbjct: 209 HFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGLLGKI 268 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T +G+ +V S + ++ ++ +++GA R ++S L+ F N Sbjct: 269 EGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWTFQN 324 >gi|254500365|ref|ZP_05112516.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222436436|gb|EEE43115.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 320 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 76/205 (37%), Positives = 119/205 (58%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA + F L+ L+TP+ +S NA + + + K G+ MTL++AL ++V SAN++ Sbjct: 1 MTALITFQALERGDVDLSTPVILSHNAMDQSAAYAGLKVGNAMTLEDALYAVLVGSANEV 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVA+AE++ TE FV MN + LGL+ATHF N +G+ +ARD+A+L + Sbjct: 61 AVALAETVAGTEAAFVDLMNAQADRLGLTATHFTNPNGLFDQKQTVSARDLAVLGRDLFQ 120 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P Y F+ + I K+ + N + + G G+KTGF C++G NIVA A + + L Sbjct: 121 VYPDYRRMFRTAAVTIDDKELISYNELITRYPGTLGLKTGFVCSAGRNIVAIAERDGKRL 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 +AV+LGA R++ +A L F Sbjct: 181 LAVVLGATTGRERSERTAKLFDDAF 205 >gi|323495455|ref|ZP_08100532.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] gi|323310378|gb|EGA63565.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] Length = 392 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L+ L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ +++ + +I++S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P+ + K G N N Sbjct: 163 KDTHFANVHGLDNSNLYSTPYDMALLGSALIRDVPEEYRIYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANARKSESKKLLSYGF 280 >gi|227114414|ref|ZP_03828070.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327371|ref|ZP_03831395.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 403 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N TF+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G +++ARDMA++ + D P+ ++ K + PN Sbjct: 167 KALGLKNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTG T ++GFN+VASA +G LI+ +LG + R S L Sbjct: 227 RNGLLWD--SSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|120597860|ref|YP_962434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sp. W3-18-1] gi|146293967|ref|YP_001184391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens CN-32] gi|120557953|gb|ABM23880.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. W3-18-1] gi|145565657|gb|ABP76592.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens CN-32] Length = 391 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +IAE+ NPASLTK+MT+YV+ +K +TISKNA Sbjct: 41 YVLMDYYSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G T+ + + + +I++S ND VA+AE + TE FV MN+ SK LG+ Sbjct: 101 FSDSSKMFIEVGKTVKVADLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMA+L + D P+ + K G K N N Sbjct: 161 RDSYFENSHGLDSDNHKTTAYDMALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278 >gi|58038510|ref|YP_190474.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] gi|58000924|gb|AAW59818.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] Length = 424 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 I PF ++A + ++D +TG V+ + D P+SLTK+MTAY+VF L + Sbjct: 72 IGPFDTVAR-----WAYVVDYDTGAVLLDKASDERMAPSSLTKMMTAYIVFGMLATGRIR 126 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L + +S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV Sbjct: 127 LEQSLPVSEKAWRTQGSKMFVPLGQSVLVSDLIQGMLIQSGNDACIVLAEGIAGSEERFV 186 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN + LG+ +HF+N G+ GHY TARD+A ++ + DFPQY HYF Sbjct: 187 AMMNEEAPKLGMMNSHFVNVTGLPADGHYMTARDVATVASHLIRDFPQYYHYFGELEFTY 246 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N N V L ADG+KTG T A GF + AS+ + +I VI G+ N R Sbjct: 247 NHIRQGNRNVLVDKGL-ADGLKTGHTEAGGFGLCASSQRNGNRVIVVINGSSSSNERAHE 305 Query: 256 SASLLSMGFYN 266 L+S F N Sbjct: 306 GERLMSWAFAN 316 >gi|261367341|ref|ZP_05980224.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile DSM 15176] gi|282570101|gb|EFB75636.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile DSM 15176] Length = 405 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 2/236 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ E D AS+TK+MT + F L+ +K L + +S++A S Sbjct: 60 LVDEDSGTVLYEKNADEQRPIASITKVMTLLLTFQALESRKISLEDNVPVSEHAYSMGGS 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MTL++ LK + V SAND AVA+AE + +E FVQ MN T+ LG+++THF Sbjct: 120 QIWLEPGEQMTLNDMLKAICVSSANDAAVAVAEFVGGSEPAFVQMMNETAAQLGMTSTHF 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWAVGTF 210 NA G+ Q GH ++ARD+AI+S + + Y I L + NTN + ++ Sbjct: 180 ENACGLDQEGHLSSARDVAIMSREMLLHHTEVRDYCSIWTDTLRNGATQLVNTNKLLKSY 239 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T +G I ASA + LIAV+LG+ R + + +LL GF N Sbjct: 240 NGITGLKTGTTSKAGVCISASAERNGLRLIAVVLGSASGKERFQAATALLDYGFAN 295 >gi|170691583|ref|ZP_02882748.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis C4D1M] gi|170143788|gb|EDT11951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis C4D1M] Length = 409 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A PD PASLTKLMTAY+VF L+ KK + +T + Sbjct: 55 WVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKITMDQTVTPGEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 115 TDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGMK 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K K PN N + Sbjct: 175 HTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ K N ++ Sbjct: 295 YGYSAYDTARLYKANQVV 312 >gi|320158294|ref|YP_004190672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] gi|319933606|gb|ADV88469.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] Length = 387 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+ D NPASLTKLMTAYV + + + IS+NA Sbjct: 38 YVLMDYHSGEVLVAKNADTQLNPASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKN 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G++++L++ + LI++S ND +VAIAE + ++ FV MN+ + LGL Sbjct: 98 FPDSSKMFIEVGTSVSLEDLYRGLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGL 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F N HG+ G Y+T RD+A L I D P + G N N + Sbjct: 158 QNSAFTNPHGLDSTGLYSTPRDIAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLL 217 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTGFT +G+++ SA G+ LI+V++G+ ++R S LLS GF Sbjct: 218 RDRSIAVDGMKTGFTSGAGYSLATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGF 275 >gi|332289415|ref|YP_004420267.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium anatis UMN179] gi|330432311|gb|AEC17370.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium anatis UMN179] Length = 394 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YV+ LKE + T +TI + + Sbjct: 43 YILMDYNSGAVLAALNPDQKHYPASLTKMMTSYVIGQALKEGRIHNTDMVTIDEESWGKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +I+ S ND VA+A+ L ++ F+ MN GL Sbjct: 103 FPGSSKMFLNVNQQVSVADLNRGIIIASGNDACVAMAKYLAGSQANFINMMNQYVDQFGL 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF HG+ Y+T+RDMA++ RI D P+ H + K K PN N Sbjct: 163 KNTHFETVHGLDHENQYSTSRDMALIGARIIRDLPEEYHIYAEKEFTFNNIKQPNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+N+VASA+ + LI+V++G R S LL GF Sbjct: 223 WDKN--LTVDGLKTGHTDEAGYNLVASAVNNNMRLISVVMGVNSFKGREIESKKLLQWGF 280 Query: 265 YN 266 N Sbjct: 281 AN 282 >gi|148975180|ref|ZP_01812104.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145965104|gb|EDK30354.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 417 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE PASLTKLMTAYVV +K + +++S+NA ++ Sbjct: 57 YVLMDFQSGSIIAEQNSRAILAPASLTKLMTAYVVGQEIKAGRLTWQDKVSVSENAWSAK 116 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S+ F + G +++ N +K +IV+S ND +VA+AE + +E+ FV MN +K+LGL Sbjct: 117 FSESSKMFIQPGDEISVSNLMKGVIVQSGNDASVALAEHIAGSEQAFVSLMNGWAKSLGL 176 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA 206 T+F+NAHG+ G T+ DMAIL I D P +Q + K +Y Sbjct: 177 QDTNFVNAHGLDGEGIQTSPLDMAILMKSIIRDVPDVYALYQERRFTWNKITQYNRNKLL 236 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG KTG+T +G+++V+SA +G LI+V++G R S +LLS GF Sbjct: 237 WDKSINVDGGKTGYTENAGYSLVSSATEGKMRLISVVMGTTSPQARTSASKNLLSYGF 294 >gi|83310217|ref|YP_420481.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82945058|dbj|BAE49922.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 435 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 1/260 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L +IA+A+ I AE + ++D G V+ PD PASLTK+MT ++ Sbjct: 12 LRLIAVALGVAIIAVAQPAEAGRYAS-IVIDAENGSVLHAANPDTRSYPASLTKVMTLFL 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +F L + L + T S +A+ PS + G +++++ + L+ KSAND AV A Sbjct: 71 LFDELDSGRIRLDSKFTTSAHAAAQSPSKLGLEPGEKISVESLILALVTKSANDAAVVAA 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + TE +F M + LG+ T + NA G+ G +T RD A L+ + P Y Sbjct: 131 EGVGGTETRFAHMMTQKAHALGMRNTVYRNASGLPDTGQVSTVRDQATLARALIRSHPGY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF + G+ N + + GADG+KTG+ ASGFN+++SA +GD+ +I V+ Sbjct: 191 YKYFSTRQFVYDGQPINTHNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDKRIIGVVF 250 Query: 245 GALDRNTRNKVSASLLSMGF 264 G ++R+ LL GF Sbjct: 251 GGSTASSRDNHMGQLLDKGF 270 >gi|296103221|ref|YP_003613367.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057680|gb|ADF62418.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 404 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE D +PASLTK+MT+YVV LK K L +TI K+A + Sbjct: 46 WILMDYSSGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATG 105 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + ++ F+ MN ++ Sbjct: 106 NPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQK 165 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 166 LGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRN 225 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + + DGMKTG T +G+N+VASA QGD LI+V+LG R S LL+ Sbjct: 226 RLLWS--SNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 283 Query: 262 MGF 264 GF Sbjct: 284 WGF 286 >gi|227821091|ref|YP_002825061.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] gi|227340090|gb|ACP24308.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] Length = 417 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V++ D PASLTK+MT Y+ F L + TP+ +SK A+ PP+ Sbjct: 29 VIDARSGRVLSAENADELNYPASLTKMMTLYLTFEALHRGEINWQTPVPMSKEAARKPPT 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K GS +T++ A+ +I+ SAND A A+AE L +E F Q M ++ LG++ T F Sbjct: 89 KLGLKPGSAITVEEAVYGMIIHSANDAAAAMAEKLGGSEAAFAQMMTAKARRLGMTRTVF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G+ TTARDMA L + DFP+ F + +G+ N + + G Sbjct: 149 VNASGLPASQQVTTARDMAKLGMALLRDFPREYRLFSAQSFNFRGRVVRGHNKLMYRYDG 208 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASGFN+V++ G++ +I V+LG +R+ A+LL Sbjct: 209 MDGIKTGYTNASGFNLVSAVRDGNRRVIGVVLGGRTAKSRDNKMAALL 256 >gi|326424426|ref|NP_763548.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|319999816|gb|AAO08538.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] Length = 391 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 12/272 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASL 56 +V + A+ +++ F + A +P Y L+D ++G V+ D NPASL Sbjct: 8 IVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNPASL 67 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIV 113 TKLMTAYV + + + IS+NA +P S+ F + G++++L++ + LI+ Sbjct: 68 TKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRGLII 127 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD+A L Sbjct: 128 QSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDIAKL 187 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASA 232 I D P + G N N + + DGMKTGFT +G+++ SA Sbjct: 188 GQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLATSA 247 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ LI+V++G+ ++R S LLS GF Sbjct: 248 TSGNMRLISVVMGSNSTSSREAESKQLLSYGF 279 >gi|157376621|ref|YP_001475221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis HAW-EB3] gi|157318995|gb|ABV38093.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis HAW-EB3] Length = 395 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D NTG VIAE NPASLTK+MT+YV+ +K +TISK A Sbjct: 45 FILMDYNTGQVIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPDDKVTISKKAWSKN 104 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +T+D+ +I++S ND VA+AE + TE FV MN+ SK LG+ Sbjct: 105 FPDSSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWSKQLGM 164 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMA+L + D P+ ++ K K N N Sbjct: 165 EDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYVLYKKKSFTYNSIKQYNRNGLL 224 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V SA + L+AV++G + R S +L+ GF Sbjct: 225 WDKS--MNVDGIKTGHTSGAGYNLVTSATKDGMRLVAVVMGTKSESARKAESKKILNYGF 282 >gi|169795133|ref|YP_001712926.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii AYE] gi|213158204|ref|YP_002320255.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii AB0057] gi|215482680|ref|YP_002324876.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB307-0294] gi|301345223|ref|ZP_07225964.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB056] gi|301511561|ref|ZP_07236798.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB058] gi|301596993|ref|ZP_07242001.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB059] gi|332853987|ref|ZP_08435103.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332869733|ref|ZP_08438921.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] gi|169148060|emb|CAM85923.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii AYE] gi|193077983|gb|ABO12897.2| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii ATCC 17978] gi|213057364|gb|ACJ42266.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii AB0057] gi|213986927|gb|ACJ57226.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB307-0294] gi|332728269|gb|EGJ59651.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332732635|gb|EGJ63868.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] Length = 439 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 21/298 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K L IT + S ++ S K G +++D L LIV SAND AV Sbjct: 69 IALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS + Sbjct: 129 TLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQT 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 189 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSPNL 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + L+ ++LG R +++ L+++ + D I +Q L E+P I Sbjct: 249 PQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|251789994|ref|YP_003004715.1| beta-lactamase [Dickeya zeae Ech1591] gi|247538615|gb|ACT07236.1| Beta-lactamase [Dickeya zeae Ech1591] Length = 402 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 146/275 (53%), Gaps = 20/275 (7%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V+ A +L + L +T P + L+D+ +G V+AE+ D +PASLTK+M Sbjct: 14 VVAATGVLMVVSSGLRAEQTPPPPQIDAKAFILIDSASGRVLAESNADTRLDPASLTKIM 73 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALKLLI 112 ++YV+ +K K +T+ K+A + N + K G +++ + K ++ Sbjct: 74 SSYVIGQAIKVGKIKPEDKVTVGKDA--WATGNPSLRGSSLMFLKPGDQISVSDLNKGMV 131 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND ++A+A+ + ++ FV MN + NLGL+ THF+ HG+ G Y+TARDMA Sbjct: 132 IQSGNDASIALADYVAGSQDAFVSLMNQYALNLGLTNTHFLTVHGLDTPGQYSTARDMAR 191 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIV 229 L+ + D P K + PN N W+ L DG+KTG+T +G ++V Sbjct: 192 LTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSGN--LRVDGVKTGYTDGAGHSLV 249 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ASA+ GD LI+V+LGA R + S LL+ GF Sbjct: 250 ASAVDGDMRLISVVLGAPSDAVRFRESEKLLTWGF 284 >gi|148977058|ref|ZP_01813704.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145963718|gb|EDK28979.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 373 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E NPASLTKLMT+YV +K + IS+NA Sbjct: 24 YVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMKRGNISADDKVRISENAWAKN 83 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T + + + + LI++S ND +VAIAE + ++ FV MN+ + +L L Sbjct: 84 FPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEQVAGSQDAFVDLMNSWATSLKL 143 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF NAHG+ Y+T D+A+L I D P + + G N N + Sbjct: 144 ENTHFANAHGLDAEDLYSTPYDIALLGRAIIKDLPDVYGLYSERSFSYNGITQHNRNGLL 203 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ +SA QG+ LIAV++GA +R S LLS GF Sbjct: 204 RDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 261 >gi|169632783|ref|YP_001706519.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii SDF] gi|169151575|emb|CAP00352.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii] Length = 439 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 21/298 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K L IT + S ++ S K G +++D L LIV SAND AV Sbjct: 69 IALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS + Sbjct: 129 TLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQT 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 189 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTQAAGYNLALTASRPSFSPNL 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + L+ ++LG R +++ L+++ + D I +Q L E+P I Sbjct: 249 PQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|302389828|ref|YP_003825649.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302200456|gb|ADL08026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 390 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 20/304 (6%) Query: 10 MAMLSNIFPFLSIAETN--------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +A+LS IF F+S+ T K P L+D TG V+ E PAS+TK+MT Sbjct: 13 IALLSLIF-FISVNFTVYAQPLPEIKSPSAILIDAGTGTVLYEKNAHEKLEPASITKIMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 V +++ K LT + IS+ A + S G TL+ LK + + SAND +V Sbjct: 72 LLVALEAIEQGKVKLTDKVKISERAWKTGGSQVFLGPGEEQTLETLLKCITIASANDASV 131 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + + + FV+ MN+ +K LG++ T+F N HG+ HYTTA D+A++S R + Sbjct: 132 AVAEYIGGSVEGFVKMMNDKAKALGMNNTNFTNPHGLSDPNHYTTAYDIALMS-RELVKY 190 Query: 182 PQY-------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P++ + Y + E + NTN +G + G DG+KTGF +G+ SA + Sbjct: 191 PKFFEWSTVWIDYLEHTDKEREATMLANTNKLLGKYEGLDGLKTGFHAKAGYCFAGSAKR 250 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDF-YQQNLSNEVPN 291 GD LI+V+L + R + + LL GF Y+ K N ++K ++ + EV Sbjct: 251 GDLRLISVVLNSPSSAERFEDTKKLLDYGFGRYSSVQVAKKNSVLKRLPVEKGVKKEVDV 310 Query: 292 ISEE 295 ++ + Sbjct: 311 VASD 314 >gi|197303542|ref|ZP_03168581.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC 29176] gi|197297540|gb|EDY32101.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC 29176] Length = 402 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 8/244 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG V+ E D PAS+TK+MT ++F L E K L +T S+ AS Sbjct: 50 PSAILMEMTTGTVLYEKDADTARPPASVTKVMTMLLIFDALAEGKIQLEDEVTTSEYASS 109 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T++ LK + V SAND VA+AE + E++FV+ MN ++ LG+ Sbjct: 110 MGGSQVFLETGEKQTVETLLKCISVASANDACVAMAEYISGNEEEFVRQMNLRAEGLGMK 169 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---Y 200 THF+N +G+ GH T+ARD+A++S + +P+ +Y I I KG Sbjct: 170 HTHFVNCNGLDAEGHETSARDIALMSRELLLKYPEIHNYCTIWMENITHTTSKGSSEFGL 229 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + A G+KTG T + F + A+A + SLIAVI+GA D R K + +LL Sbjct: 230 TNTNKLIRQYEYATGLKTGSTGKAKFCVSATAEKNGVSLIAVIMGAEDSKARFKDAVTLL 289 Query: 261 SMGF 264 + GF Sbjct: 290 NYGF 293 >gi|319427343|gb|ADV55417.1| Beta-lactamase [Shewanella putrefaciens 200] Length = 391 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +IAE+ NPASLTK+MT+YV+ +K +TISKNA Sbjct: 41 YVLMDYYSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G T+ + + + +I++S ND VA+AE + TE FV MN+ SK LG+ Sbjct: 101 FSDSSKMFIEVGKTVKVADLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H TTA DMA+L + D P+ + K G K N N Sbjct: 161 RDSYFENSHGLDSDNHKTTAYDMALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278 >gi|261343559|ref|ZP_05971204.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] gi|282568708|gb|EFB74243.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] Length = 403 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 13/259 (5%) Query: 17 FPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 FP SI A T Y L+D N+G V+AE+ D +PASLTK+MT+YV+ +K K Sbjct: 33 FPNTSIPAAPTIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGKI 92 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAES 126 +T+ ++A + N FK S M L ++ + ++S ND VA+A+ Sbjct: 93 GANDMVTVGEDA--WATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADH 150 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + + FV MNN LGL THF HG+ G Y++ARDMA++ + D P+ Sbjct: 151 VAGDQSSFVNLMNNYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYE 210 Query: 187 YFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ K + N N + L DG+KTG T A+G+N+VASA GD LI+V++G Sbjct: 211 IYKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLVASAKDGDMRLISVVMG 270 Query: 246 ALDRNTRNKVSASLLSMGF 264 R+ S LL+ GF Sbjct: 271 GKSSKGRDAESKKLLTYGF 289 >gi|37676160|ref|NP_936556.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] gi|37200701|dbj|BAC96526.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] Length = 391 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 142/272 (52%), Gaps = 12/272 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASL 56 +V + A+ +++ F + A +P Y L+D ++G V+ D NPASL Sbjct: 8 IVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNPASL 67 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIV 113 TKLMTAYV + + + IS+NA +P S+ F + G++++L++ + LI+ Sbjct: 68 TKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRGLII 127 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD+A L Sbjct: 128 QSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDIAKL 187 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASA 232 I D P + G N N + + DGMKTGFT +G+++ SA Sbjct: 188 GQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLATSA 247 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ LI+V++G+ ++R S LLS GF Sbjct: 248 TSGNMRLISVVMGSNSTSSREAESKQLLSYGF 279 >gi|59711352|ref|YP_204128.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Vibrio fischeri ES114] gi|197335666|ref|YP_002155507.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11] gi|59479453|gb|AAW85240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Vibrio fischeri ES114] gi|197317156|gb|ACH66603.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11] Length = 391 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + NPASLTK+MT+YV+ ++ + + ISKNA Sbjct: 41 YVLMDYHSGKVLAEKDMNVRMNPASLTKMMTSYVIGQEIESGNISMDDDVVISKNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GST+ + K +I++S ND VA+AE + +E FV MN +K L L Sbjct: 101 FPGSSKMFIEVGSTVKVRELNKGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWAKTLNL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ + Y+T DMA++ + D P+ + K G N N Sbjct: 161 KNTHFANVHGLDRDDLYSTPYDMALIGQALIRDVPEEYRVYSEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +GFN+V+SA +G L+AV++G N R S LL+ GF Sbjct: 221 W--DKSMNVDGIKTGHTNGAGFNLVSSATEGKMRLVAVVMGTKSGNARKAESKKLLNYGF 278 >gi|22125078|ref|NP_668501.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis KIM 10] gi|45440942|ref|NP_992481.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis biovar Microtus str. 91001] gi|108808491|ref|YP_652407.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Antiqua] gi|108811250|ref|YP_647017.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Nepal516] gi|145599915|ref|YP_001163991.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Pestoides F] gi|149365498|ref|ZP_01887533.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125] gi|162419741|ref|YP_001606339.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Angola] gi|165937675|ref|ZP_02226237.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|166008297|ref|ZP_02229195.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|167398703|ref|ZP_02304227.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167423578|ref|ZP_02315331.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468426|ref|ZP_02333130.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1] gi|170025245|ref|YP_001721750.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis YPIII] gi|186894472|ref|YP_001871584.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis PB1/+] gi|218929682|ref|YP_002347557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis CO92] gi|229838147|ref|ZP_04458306.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895938|ref|ZP_04511108.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A] gi|229898742|ref|ZP_04513887.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. India 195] gi|229901487|ref|ZP_04516609.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516] gi|270489672|ref|ZP_06206746.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294504405|ref|YP_003568467.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003] gi|21957931|gb|AAM84752.1|AE013720_16 D-alanyl-D-alanine carboxypeptidase, fraction A [Yersinia pestis KIM 10] gi|45435801|gb|AAS61358.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Microtus str. 91001] gi|108774898|gb|ABG17417.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Nepal516] gi|108780404|gb|ABG14462.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Antiqua] gi|115348293|emb|CAL21224.1| putative penicillin-binding protein 5 [Yersinia pestis CO92] gi|145211611|gb|ABP41018.1| penicillin-binding protein 5 [Yersinia pestis Pestoides F] gi|149291911|gb|EDM41985.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125] gi|162352556|gb|ABX86504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165914425|gb|EDR33040.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|165992679|gb|EDR44980.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|167051207|gb|EDR62615.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057748|gb|EDR67494.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751779|gb|ACA69297.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|186697498|gb|ACC88127.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] gi|229681416|gb|EEO77510.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516] gi|229688290|gb|EEO80361.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. India 195] gi|229694513|gb|EEO84560.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700861|gb|EEO88890.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A] gi|262362606|gb|ACY59327.1| putative penicillin-binding protein 5 [Yersinia pestis D106004] gi|270338176|gb|EFA48953.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294354864|gb|ADE65205.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003] gi|320016196|gb|ADV99767.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 400 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 46 YILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDA--WA 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 104 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 163 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 164 KALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 223 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+V+LG R S L Sbjct: 224 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKL 281 Query: 260 LSMGF 264 L+ GF Sbjct: 282 LTWGF 286 >gi|260549669|ref|ZP_05823886.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624] gi|260407186|gb|EEX00662.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624] Length = 439 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 21/298 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K L IT + S ++ S K G +++D L LIV SAND AV Sbjct: 69 IALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS + Sbjct: 129 TLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQT 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 189 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSPNL 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + L+ ++LG R +++ L+++ + D I +Q L E+P I Sbjct: 249 PQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|51595441|ref|YP_069632.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis IP 32953] gi|153946853|ref|YP_001401914.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis IP 31758] gi|51588723|emb|CAH20334.1| putative penicillin-binding protein 5 [Yersinia pseudotuberculosis IP 32953] gi|152958348|gb|ABS45809.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] Length = 400 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 46 YILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGADDMVTVGKDA--WA 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 104 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 163 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 164 KALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 223 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+V+LG R S L Sbjct: 224 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKL 281 Query: 260 LSMGF 264 L+ GF Sbjct: 282 LTWGF 286 >gi|307728308|ref|YP_003905532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1003] gi|307582843|gb|ADN56241.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1003] Length = 409 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A PD PASLTKLMTAY+VF L+ KK + +T + Sbjct: 55 WVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKITMDQTVTPGEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 115 TDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVNMMNTEAQRLGMT 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K K PN N + Sbjct: 175 HTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF 264 G+ Sbjct: 295 YGY 297 >gi|300023249|ref|YP_003755860.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299525070|gb|ADJ23539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 397 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 136/245 (55%), Gaps = 5/245 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T+K P L+D TG + + + D P PAS++KLMT V+F +KE + T T+S Sbjct: 38 TSKAPRAILIDAATGATLFQQHADEPAPPASMSKLMTLAVLFRAMKEGRIQKTDEFTMSV 97 Query: 85 NA--SEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 NA + PS ++ + +T+D ++ ++++S ND A+ +AE + + F + MN Sbjct: 98 NAWRNGGAPSGTSAMMVPVNTKVTVDELIQGIVIQSGNDAAMCVAEGMAGSIPAFARMMN 157 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + +K +GL+ + F NA G+ +ARD+A+L+ I ++P Y F K + + Sbjct: 158 DEAKRIGLTKSTFTNASGLPDPQQVMSARDLAVLARYIIDEYPDYYPVFAQKEFLYRKHR 217 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + N N + +GADG+KTG T A+GF +V SA+Q + LI V+ G + R + + L Sbjct: 218 FINRNPLLFQNIGADGLKTGHTAAAGFGLVGSAVQDGKRLIVVVSGLEKADQRKEEAVKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LNWGF 282 >gi|256821559|ref|YP_003145522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM 16069] gi|256795098|gb|ACV25754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM 16069] Length = 389 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 129/243 (53%), Gaps = 12/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG +I EN D PASLTK+MT+Y++ L + + + +S+NA Sbjct: 41 YLLMDYDTGQIIMENNADQKLPPASLTKMMTSYIIGDELHKGNLSMDDKVLVSENAW--- 97 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K GS M +++ + +I++S ND ++A+AE + TE F MN + Sbjct: 98 AQNPKLKGGSLMFIEVNKYVRVEDLYRGIIIQSGNDASIAMAEHIAGTEGAFADLMNQYA 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG+ THF N+ G GH TTARD+AIL+ + DFP+ + + G K N Sbjct: 158 AKLGMKDTHFENSTGWPAEGHVTTARDLAILARALIRDFPEDYKLYAEREFTYNGIKQAN 217 Query: 203 TNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N +G L DG+KTG T +G+ +V+SA + D LI+V++G R + LL+ Sbjct: 218 RNGLLGDPTLNVDGLKTGHTEEAGYCLVSSAEKEDMRLISVVMGTDSEAERAAETRKLLN 277 Query: 262 MGF 264 GF Sbjct: 278 FGF 280 >gi|167772329|ref|ZP_02444382.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM 17241] gi|167665432|gb|EDS09562.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM 17241] Length = 391 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 3/238 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D PAS+TK+MT +V L + L +T S++A S Sbjct: 50 LIEQSTGRVLFEKNADEQLPPASITKVMTLLLVMEALDSGQIALGDMVTCSEHAQSMGGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 FK G +++D+ LK + SAND +VA+AE + +E+ FV MN + LG++ THF Sbjct: 110 QIWFKAGEQLSVDDLLKAAAISSANDASVALAEHVAGSEEAFVALMNEKAAQLGMTNTHF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTF 210 +NA G+ GH TTARD+A +S R +P+ Y E++G + NTN V + Sbjct: 170 VNATGLDADGHLTTARDIAAMS-RALLAYPKITEYSGTWMSELRGGATQLVNTNKLVRFY 228 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 G G+KTG T +G + ASA +G SLIAV LG+ R + LL GF N T Sbjct: 229 DGCTGLKTGTTDGAGSCLSASATRGGLSLIAVTLGSPTSAERFSAARGLLDYGFANYT 286 >gi|156973523|ref|YP_001444430.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|156525117|gb|ABU70203.1| hypothetical protein VIBHAR_01214 [Vibrio harveyi ATCC BAA-1116] Length = 392 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRIYSDKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|165925339|ref|ZP_02221171.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166212479|ref|ZP_02238514.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|167422579|ref|ZP_02314332.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|165922946|gb|EDR40097.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166206410|gb|EDR50890.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958593|gb|EDR55614.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 380 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 26 YILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDA--WA 83 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 84 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 143 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 144 KALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 203 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+V+LG R S L Sbjct: 204 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKL 261 Query: 260 LSMGF 264 L+ GF Sbjct: 262 LTWGF 266 >gi|269961547|ref|ZP_06175909.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] gi|269833588|gb|EEZ87685.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] Length = 392 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRIYSDKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|261253676|ref|ZP_05946249.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] gi|260937067|gb|EEX93056.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] Length = 392 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L+ L +TISKNA Sbjct: 43 YVLMDFHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ +++ + +IV+S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPDSSKMFIEVGTTVKVEDLNRGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRIYSDKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKNANARKSESKKLLSYGF 280 >gi|195941235|ref|ZP_03086617.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. EC4024] Length = 363 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K L +T+ K+A + Sbjct: 7 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTVGKDAWATG 66 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + ++ F+ MN ++ Sbjct: 67 NPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQK 126 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 127 LGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 186 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W+ + + DGMKTG T +G+N+VASA QGD LI+V+LG R S LL+ Sbjct: 187 RLLWS--SNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 244 Query: 262 MGF 264 GF Sbjct: 245 WGF 247 >gi|119470843|ref|ZP_01613454.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Alteromonadales bacterium TW-7] gi|119446070|gb|EAW27349.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Alteromonadales bacterium TW-7] Length = 390 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG VIAE D PASLTK+MT+YV+ + +K T +TIS+ A Sbjct: 43 YFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVIGTEIKVGNIAPTDMVTISEKAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++D +I++S ND VA++E + +E F MN + LG+ Sbjct: 103 FPESSKMFIEVGKQISVDELNHGIIIQSGNDACVAMSEHIAGSESAFADLMNAHAAKLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + +HF+N+HG+ HYTT RDMA LS + D P+ ++ K G K N N Sbjct: 163 TNSHFINSHGLDTDEHYTTPRDMATLSAALIRDVPEEYAIYKEKSYTYNGIKQYNRNSLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V SA + LIAV++G R S LL+ GF Sbjct: 223 W--DESLDVDGIKTGHTSEAGYSLVTSATKNGMRLIAVVMGTSSERARKVESKKLLNYGF 280 >gi|300715824|ref|YP_003740627.1| penicillin-binding protein 5 [Erwinia billingiae Eb661] gi|299061660|emb|CAX58776.1| Penicillin-binding protein 5 [Erwinia billingiae Eb661] Length = 403 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIKQDDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVAVSELTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTHFQTVHGLDADGQYSSARDMALIGRALIRDVPDEYAVYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA +G LI+ ++G R S L Sbjct: 227 RNGLLWD--TSLQVDGIKTGHTEAAGYNLVASATEGQMRLISAVMGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|225023258|ref|ZP_03712450.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC 23834] gi|224943903|gb|EEG25112.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC 23834] Length = 414 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +G ++A + + PASLTKLMTAY+VF L+E K T+S+ + Sbjct: 65 YAVYDAQSGQMLASHKLNEHIEPASLTKLMTAYLVFKALEEGKLKPDQTFTVSEQGWKAE 124 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +D+ LK +IV+S ND ++ +AE++ +E +FVQ MN +K LG++ T Sbjct: 125 GSRMFLDPKTPARVDDLLKGVIVQSGNDASITLAEAVAGSEAQFVQLMNAEAKRLGMNDT 184 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G+ HYT+ +D+ LS I D+PQY + I+ PN N + Sbjct: 185 HFENSTGLPGAQHYTSVQDLITLSAAIIHDYPQYYPLYAIQSYSYNNITQPNRNLLLYRD 244 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DGMKTG T ++G+N+VAS+ + + +I+V++G R S+ LL Sbjct: 245 PDVDGMKTGHTDSAGYNLVASSKRNGRRVISVVVGTESMQARAAESSKLL 294 >gi|88705586|ref|ZP_01103296.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Congregibacter litoralis KT71] gi|88700099|gb|EAQ97208.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Congregibacter litoralis KT71] Length = 372 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 134/245 (54%), Gaps = 6/245 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEY 89 Y L+D N+G V+ E+ D PASLTKLMTAYV+ S ++ + +T+S+NA S+ Sbjct: 20 YLLVDANSGAVLVESNADEQLPPASLTKLMTAYVLASEIEAGRVSRDDQVTVSRNAWSQN 79 Query: 90 PPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P N + + +T+ + +++ S ND VA+AE + +E F MN + L Sbjct: 80 PVFNGSSLMWIEPRKPVTIGQLEQGVVISSGNDATVAVAEHIAGSEAAFADLMNKHAAEL 139 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 GL T+F N+HG+ H TTARD+A L+ I FP++ + + K N N Sbjct: 140 GLHGTYFANSHGLPHPQHLTTARDLATLAKNIIARFPEHYKVYSQRDYTYNDIKQYNRNK 199 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF- 264 +G DG+KTG+T +G+ +VASA + LI+V++G R + + SLL+ GF Sbjct: 200 LLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARETRSLLNYGFR 259 Query: 265 YNKTD 269 + +TD Sbjct: 260 FYETD 264 >gi|307246518|ref|ZP_07528590.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255504|ref|ZP_07537310.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259955|ref|ZP_07541668.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262081|ref|ZP_07543735.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306852581|gb|EFM84814.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861546|gb|EFM93534.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865983|gb|EFM97858.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868260|gb|EFN00083.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 392 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G+V+A PD PASLTK+MT+YVV LK+ K + +T+++N A + Sbjct: 40 YILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + ++ LI+ S ND AVA+AE +++ F+ MN + GL Sbjct: 100 FPGSSLMFLDLNTQVSVADLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 T+F HG+ Y++ARDMAI+ + D P+ + K + KK PN N Sbjct: 160 KNTNFTTVHGLDDPNQYSSARDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 220 LW--DKTINVDGMKTGHTSQAGYNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|254360903|ref|ZP_04977049.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] gi|153092382|gb|EDN73445.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] Length = 392 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G V+ PD PASLTK+MT+YVV LK K + + +++N A + Sbjct: 40 YILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQK 99 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F S +++ +K LI+ S ND +VA+AE + ++ F+ MN ++ GL Sbjct: 100 FPGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 THF HG+ Y++ARDMAI+ I D P+ + K + KK PN N Sbjct: 160 KNTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASAI + LI+V++G R S LL G Sbjct: 220 LW--DKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|53729243|ref|ZP_00133773.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209060|ref|YP_001054285.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae L20] gi|165977032|ref|YP_001652625.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150927|ref|YP_001969452.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250838|ref|ZP_07337032.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253460|ref|ZP_07339602.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248643|ref|ZP_07530657.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250875|ref|ZP_07532803.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253259|ref|ZP_07535133.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257674|ref|ZP_07539433.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307264281|ref|ZP_07545870.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097852|gb|ABN74680.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877133|gb|ABY70181.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916058|gb|ACE62310.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647704|gb|EFL77918.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650351|gb|EFL80513.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854854|gb|EFM87043.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857125|gb|EFM89253.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859246|gb|EFM91285.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863849|gb|EFM95773.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306870345|gb|EFN02100.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 392 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G+V+A PD PASLTK+MT+YVV LK+ K + +T+++N A + Sbjct: 40 YILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + ++ LI+ S ND AVA+AE +++ F+ MN + GL Sbjct: 100 FPGSSLMFLDLNTQVSVADLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 T+F HG+ Y++ARDMAI+ + D P+ + K + KK PN N Sbjct: 160 KNTNFTTVHGLDDPNQYSSARDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 220 LW--DKTINVDGMKTGHTSQAGYNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|260855992|ref|YP_003229883.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257754641|dbj|BAI26143.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] Length = 388 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I D P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|256004001|ref|ZP_05428987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|255992129|gb|EEU02225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316940572|gb|ADU74606.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 404 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++ EN AS+TK+M+ +V + K + +T S+ A+ Sbjct: 56 YVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYAASMG 115 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K LG++ T Sbjct: 116 GSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELGMNNT 175 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 +F++ G+ GHY+TA D+A++S + P+ + + I + ++ NTN V Sbjct: 176 NFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTNKLVH 235 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL GF N Sbjct: 236 FYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGFAN-Y 294 Query: 269 DRKKIN 274 + K++N Sbjct: 295 ESKQVN 300 >gi|296116334|ref|ZP_06834950.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] gi|295977153|gb|EFG83915.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] Length = 435 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 1/237 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + ++D TG V+ E D P+SLTK+MTAYVVF L+ + L +T+S+ A Sbjct: 91 WACIIDYTTGAVLLEKAADERMPPSSLTKMMTAYVVFGMLRAGRLKLDQTLTVSEKAWRM 150 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + + + ++ ++++S ND + +AE + +E +FV MN + LG++ Sbjct: 151 QGSKMFVPLQGAVAVSDLIQGMVIQSGNDACIVLAEGVAGSEDQFVSLMNAQAVQLGMTN 210 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THFMNA G GHY +ARD+ ++ + DFP+Y H+F KG N N V Sbjct: 211 THFMNATGWPADGHYMSARDVTTIAMHLIHDFPEYYHFFAEKGFRYNRISQENRNALVVK 270 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T A GF + AS+ + ++ I G N R LL GF N Sbjct: 271 GI-ADGLKTGHTDAGGFGLCASSERNGNRIVMAINGLPSSNARAFEGERLLEWGFVN 326 >gi|125973197|ref|YP_001037107.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|281417396|ref|ZP_06248416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|125713422|gb|ABN51914.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|281408798|gb|EFB39056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 404 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++ EN AS+TK+M+ +V + K + +T S+ A+ Sbjct: 56 YVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYAASMG 115 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K LG++ T Sbjct: 116 GSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELGMNNT 175 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 +F++ G+ GHY+TA D+A++S + P+ + + I + ++ NTN V Sbjct: 176 NFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTNKLVH 235 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL GF N Sbjct: 236 FYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGFAN-Y 294 Query: 269 DRKKIN 274 + K++N Sbjct: 295 ESKQVN 300 >gi|283832568|ref|ZP_06352309.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291072237|gb|EFE10346.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 390 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 35/332 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + + A +N+ F + L+D TG ++ NPASLTKLMT Y Sbjct: 14 FAMSFSPAWATNVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALKLLIVKS 115 VV + K+ T +T+ ++A + N F K+G +++ + + LIV S Sbjct: 74 VVDRAIDSKRISPTDIVTVGRDA--WAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDS 131 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + + +FV MNN ++ L L THF HG+ G +++A D+A+LS Sbjct: 132 GNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSR 191 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 I P + H + K L G N N W + DG+KTG T +GFN++ASA Sbjct: 192 AIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHTSGAGFNLIASA 249 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-------------------KTDRKKI 273 + G + LIAV++GA R + LL G N D++KI Sbjct: 250 VDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGTERIWYGDKEKI 309 Query: 274 NY-IIKDFYQQNLSNEVPNISEEVCTTQKEII 304 + +DF+ EV NI + +KE++ Sbjct: 310 SLGTEQDFWMALPKAEVANIKAKYVLDKKELV 341 >gi|254784818|ref|YP_003072246.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901] gi|237684996|gb|ACR12260.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901] Length = 390 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 11/242 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG VI E+ D PASLTK+MT+Y+V + + T + +S +A Sbjct: 42 YLLIDADTGKVIVEHNADEQLPPASLTKMMTSYIVSEEIYAGRLQETDLVRVSDDAWRRG 101 Query: 91 PSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + S STM L+ + L+ +I++S ND ++A+A+ + +E+ F + MN + Sbjct: 102 GAKS---GSSTMFLEARSEVPVIDMLRGVIIQSGNDASIALAQHIAGSEEAFAEIMNQQA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ +HF NA G GH TTARD+AIL+ + D P++ + K + G PN Sbjct: 159 QLLGMTNSHFRNATGWPAEGHLTTARDLAILAKALINDHPKHYALYSEKHFKHNGISQPN 218 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + T DG+KTG T A+G+ +VASA + LI+V++GA N R S LL+ Sbjct: 219 RNKLLFTDNTVDGIKTGHTEAAGYCLVASAKRDGMRLISVVMGAKSENARAAESKKLLAY 278 Query: 263 GF 264 GF Sbjct: 279 GF 280 >gi|240950037|ref|ZP_04754345.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor NM305] gi|240295515|gb|EER46258.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor NM305] Length = 392 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G V+A PD PASLTK+MTAYVV +K+ K + +T+++N A + Sbjct: 40 YILMDYNSGAVLASLNPDQRQYPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + +K LI+ S ND AVA+AE +++ F+ MN ++ GL Sbjct: 100 FPGSSLMFLDLNTQVSVGDLMKGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 T+F HG+ +++ARDMAI+ + D P+ + K + KK PN N Sbjct: 160 KNTYFTTVHGLDDPNQFSSARDMAIIGTHVIRDQPEEYKIYAEKEFQYNIKKPQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 220 LW--DKTMNVDGMKTGHTDKAGYNLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|294635241|ref|ZP_06713743.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291091358|gb|EFE23919.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 387 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 16/248 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++A+ PD NPASLTKLMT YVV L + + L P+ I +A + Sbjct: 36 WVLMDAQTGQILAQGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDPVPIGNDA--WA 93 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N +FK S M T+ + ++ +I+ S ND VA+A+ + + FV+ MN Sbjct: 94 TRNPSFKGSSLMFLKPGDKATVSDLIRGIIIDSGNDACVALADYVSGDQAGFVRLMNGYV 153 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G Y++ARD+A L+ I Y H++ K L G N Sbjct: 154 QQLHLQNTHFETVHGLDAPGQYSSARDLAQLARAIILHEQPYYHFYAQKSLSWNGVTQNN 213 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSAS 258 N W L DGMKTG T ++GFN+VAS+I Q LIAV++GA R + Sbjct: 214 RNGLLW--DQDLHVDGMKTGHTASAGFNLVASSIDPHGQRLIAVVMGADSSRGREVQAKK 271 Query: 259 LLSMGFYN 266 LL G N Sbjct: 272 LLQWGERN 279 >gi|188025727|ref|ZP_02959597.2| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827] gi|188020262|gb|EDU58302.1| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827] Length = 402 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T++++A + Sbjct: 48 YILIDYNSGKVLAEKNADQRRDPASLTKMMTSYVIGQAIKSGKIGAEDIVTVNEDA--WA 105 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+A+ + + F+Q MN Sbjct: 106 TGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVAGDQANFIQLMNGYV 165 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA+L + D P ++ K + N Sbjct: 166 SKLGLQNTHFQTVHGLDAEGQYSSARDMALLGQALIRDVPDEYAIYKEKEFTFNNIRQTN 225 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T A+G+N+VASA +G LI+V++G R+ S LL+ Sbjct: 226 RNGLLWDKSLSVDGIKTGHTNAAGYNLVASATEGQMRLISVVMGGKSMKGRDAESKKLLT 285 Query: 262 MGF 264 GF Sbjct: 286 YGF 288 >gi|291616674|ref|YP_003519416.1| DacA [Pantoea ananatis LMG 20103] gi|291151704|gb|ADD76288.1| DacA [Pantoea ananatis LMG 20103] Length = 418 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ ++A + Sbjct: 64 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGQDA--WA 121 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 122 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYV 181 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 182 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMN 241 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S LL+ Sbjct: 242 RNGLLWDTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLT 301 Query: 262 MGF 264 GF Sbjct: 302 WGF 304 >gi|323152399|gb|EFZ38687.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli EPECa14] Length = 390 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I D P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|297180556|gb|ADI16768.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0010_11B23] Length = 368 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 7/244 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L + NT V+ D P PASLTKLMT+YVV ++KE L IS A + Sbjct: 22 YVLYEPNTKKVLVSFNADEPVQPASLTKLMTSYVVADYIKEDFIRLDDTPKISIKAWKTE 81 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + + + +K +I++S ND +VA+AE + +E+ F MN + LG+ + Sbjct: 82 GSRMFIREGTKVAVSDLIKGMIIQSGNDASVALAEHVAGSEENFAYLMNEYASQLGMQNS 141 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 F NA G+ + T+A D+A+L+ + +FP++ + K G K PN N W Sbjct: 142 SFNNASGLPDPLNVTSAYDLALLTSALINNFPEHYKLYSEKSYTYAGIKQPNRNRLLWRS 201 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F DG KTG+ +G+ +V SA++GD L+AV+LG+ D N VSA L+ GF + Sbjct: 202 DIF---DGAKTGYHSQAGYCLVGSAMRGDMRLVAVVLGSEDDKRFNDVSA-LMDYGFRHF 257 Query: 268 TDRK 271 T K Sbjct: 258 TTEK 261 >gi|183598299|ref|ZP_02959792.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827] gi|188020471|gb|EDU58511.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827] Length = 401 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G ++A PD +PASLTK+MT+YVV +K K +T+ +A + Sbjct: 43 FVLMDYDSGKILASGNPDERLDPASLTKMMTSYVVGQAIKAGKITPQDMVTVGVDA--WA 100 Query: 91 PSNSTFKKGSTMTLD-----NALKL---LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L + L L ++++S ND ++A+A+ + ++ FV MN Sbjct: 101 TGNPVLKGSSLMFLKPKDRVSVLDLNKGVVIQSGNDASIALADYVAGSQDSFVSLMNEYV 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y+TARDMAIL+ + D P + K + PN Sbjct: 161 KQLGLKNTHFKTVHGLDSEGQYSTARDMAILAQAMIRDVPDEYALHKEKEFTFNKIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ L DG+KTG T +G N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLWSQN--LNVDGVKTGHTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|94309170|ref|YP_582380.1| penicillin-binding protein 6 [Cupriavidus metallidurans CH34] gi|93353022|gb|ABF07111.1| D-alanyl-D-alanine carboxypeptidase [Cupriavidus metallidurans CH34] Length = 397 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 11/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML---TTPITISKNAS 87 + L D +G +A D PASLTKLMTAY+ F LKEK+ L TP I + Sbjct: 44 WMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVTPTDIVRKVK 103 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + G +++ + L LIV+S ND ++A+AE++ +E+ FV MN ++ +G+ Sbjct: 104 S-DESRMFIEAGKPVSVQDLLLGLIVQSGNDASLALAEAVGGSEEGFVVMMNREAQRMGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF N GV HYTTA D+AIL+ R+ DFP+Y + K + PN N + Sbjct: 163 KNTHFTNTDGVPDPNHYTTAVDLAILTTRLIKDFPEYYSMYSQKEFTYNKIRQPNRNRLL 222 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T ++G+ +++SA + G + L+++++G R + S +L Sbjct: 223 YIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLVSIVIGTATEQIRTQESLKIL 282 Query: 261 SMGF 264 + GF Sbjct: 283 NYGF 286 >gi|327393100|dbj|BAK10522.1| penicillin-binding protein 5 precursor DacA [Pantoea ananatis AJ13355] Length = 410 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ ++A + Sbjct: 56 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGQDA--WA 113 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 114 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYV 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 174 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMN 233 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T ++G+N+VASA +G LI+ ++G R S L Sbjct: 234 RNGLLW--DTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGRETESKKL 291 Query: 260 LSMGF 264 L+ GF Sbjct: 292 LTWGF 296 >gi|311693499|gb|ADP96372.1| serine-type D-Ala-D-Ala carboxypeptidase [marine bacterium HP15] Length = 374 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 137/241 (56%), Gaps = 1/241 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +I E PASLTK+MTAY+V L E + ++ + IS NA + Sbjct: 28 YVLMDPKSGRIIMEENSHERLPPASLTKMMTAYIVERELDEGRIAMSDMVPISVNAWKTE 87 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + ++G+ +++++ L+ +I++S ND +VA+AE + +E FV MN ++ LG+ T Sbjct: 88 GSRTFVREGTQVSVEDLLRGVIIQSGNDASVALAEFVAGSEGAFVDIMNQQAQLLGMKDT 147 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F+NA G+ H++TA D+A+L+ I D+P+ + K + PN N + Sbjct: 148 NFVNATGLPSPEHFSTAYDLAMLARAIINDYPENYPLYAEKHFTYNNIRQPNRNSLLWRD 207 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTD 269 DG+KTG T +G+ +VASA + D IAV++G R + +L+ GF Y +++ Sbjct: 208 DSVDGLKTGHTEEAGYCLVASAKRNDTRFIAVVMGTNSSEARAQEIQKMLNYGFRYYESE 267 Query: 270 R 270 R Sbjct: 268 R 268 >gi|90416209|ref|ZP_01224141.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium HTCC2207] gi|90331934|gb|EAS47148.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium HTCC2207] Length = 391 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 13/262 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D NTGH++ EN D P PASL K+MT Y+V + + + + IS NA E Sbjct: 39 YILIDANTGHILVENNADMPLPPASLVKMMTTYIVSNEIAAGRMSKDETVLISDNAWEKG 98 Query: 91 PSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + + GSTM L+ + ++ +I++S ND ++A+AE + E F MN+ + Sbjct: 99 GAKT---DGSTMFLNPRTRVSVSDLMRGVIIQSGNDASIALAEHISGDEAAFADVMNHQA 155 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG+ +T ++N+ G+ G +TARD+++L+ I D P++ + K + PN Sbjct: 156 SLLGMDSTQYLNSTGLPYEGMVSTARDLSLLARAIIQDHPEHYSIYSEKYFKYNNINQPN 215 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DG+KTG T A+G+ +V+SA + D LI+V++GA R + + LLS Sbjct: 216 RNRLLWRDSSVDGLKTGHTNAAGYCLVSSAKRRDMRLISVVMGADSDKARARETQKLLSY 275 Query: 263 GFYNKTDRKKINYIIKDFYQQN 284 GF + D K I Y D ++N Sbjct: 276 GFRH-YDTKTI-YSAGDILKEN 295 >gi|294788907|ref|ZP_06754147.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC 29453] gi|294483009|gb|EFG30696.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC 29453] Length = 411 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D + ++A D PASLTK+MTAY+VF L E K + +S+ A + Sbjct: 64 YLVKDLQSNQILASKDIDKSIEPASLTKVMTAYIVFKNLNEGKLKPEQMLKVSEKAWKVE 123 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ + +K LIV S ND A+ +AE L +E KFV MN +K LG++ T Sbjct: 124 GSRMFLEMKKPVSVADLIKGLIVHSGNDAAITLAEGLSGSEAKFVDLMNAEAKRLGMNQT 183 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N G+ H TT +D+ LS I DFP Y + +K G K PN N + Sbjct: 184 HFENTTGLPSPKHLTTVQDLMTLSDAIIHDFPDYYKIYSLKEFTYNGIKQPNRNLLLFRD 243 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DGMKTG T ++G+N++AS+ + + ++++++G + R S+ LL+ N Sbjct: 244 PSVDGMKTGHTSSAGYNLIASSKRNGRRVVSIVVGTASQEARATESSKLLNFALQN 299 >gi|239501103|ref|ZP_04660413.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB900] Length = 439 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 21/298 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K L IT + S ++ S K G +++D L LIV SAND AV Sbjct: 69 IALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS + Sbjct: 129 TLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQT 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 189 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSPNL 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + L+ ++LG R +++ L+++ + D I +Q L E+P I Sbjct: 249 PQRRLLVIVLGTPSAVKRAEIADKLMNLTYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|262366391|gb|ACY62948.1| penicillin-binding protein 5 [Yersinia pestis D182038] Length = 335 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 71 YILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDA--WA 128 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 129 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 188 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 189 KALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 248 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+V+LG R S L Sbjct: 249 RNGLLW--DTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKL 306 Query: 260 LSMGF 264 L+ GF Sbjct: 307 LTWGF 311 >gi|300717466|ref|YP_003742269.1| penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase) [Erwinia billingiae Eb661] gi|299063302|emb|CAX60422.1| Penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase) [Erwinia billingiae Eb661] Length = 379 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 134/272 (49%), Gaps = 26/272 (9%) Query: 17 FPFLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 F L+ A+ N L + + L+D TG V+ + D NPASLTKLMT YVV Sbjct: 5 FASLAHADDNPLAFPMTPPSVDAASWVLMDATTGQVLTQGNADERRNPASLTKLMTGYVV 64 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSAN 117 + K+ +TI ++A + N FK S M L K+ +I+ S N Sbjct: 65 DRAIDAKRITRDDMVTIGQDA--WGAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+A+ + ++ FV MN LGL+ THF HG+ G +TTA D+A LS I Sbjct: 123 DACVALADYVAGSQSAFVDQMNQYVTKLGLTNTHFETVHGLDAPGQFTTAGDLAKLSRAI 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + P + + K L G N N W L DG+KTG T ++GFNI+AS++ Sbjct: 183 ISGEPDFYQMYGEKSLTWNGITQQNRNGLLWD--KTLHVDGLKTGHTESAGFNIIASSVD 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G + LIAVI+G R + + LL+ G N Sbjct: 241 GQRRLIAVIMGGKSTKGREEQARKLLTWGQNN 272 >gi|293397311|ref|ZP_06641583.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291420229|gb|EFE93486.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 431 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE+ D +PASLTK+MT+YV+ LK K +T+ ++A + Sbjct: 77 YILIDYNSGKVLAESNADARRDPASLTKMMTSYVIGQALKSGKIGQEDLVTVGQDA--WA 134 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MN Sbjct: 135 TGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYV 194 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 195 KQLGLQNTHFQTVHGLDAQGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQVN 254 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA +G LI+ +LG R S L Sbjct: 255 RNGLLW--DTSLNVDGIKTGHTSAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKL 312 Query: 260 LSMGF 264 L+ GF Sbjct: 313 LTWGF 317 >gi|317047293|ref|YP_004114941.1| beta-lactamase [Pantoea sp. At-9b] gi|316948910|gb|ADU68385.1| Beta-lactamase [Pantoea sp. At-9b] Length = 428 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 74 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGKDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 132 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYV 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 192 QALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPDEYAVYHEKEFTFNNIRQLN 251 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DG+KTG T A+G+N+VASA +G LI+ ++G R S LL+ Sbjct: 252 RNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLT 311 Query: 262 MGF 264 GF Sbjct: 312 WGF 314 >gi|193071481|ref|ZP_03052393.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|192955203|gb|EDV85694.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] Length = 388 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G Y Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQY 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|219871407|ref|YP_002475782.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding protein 5 [Haemophilus parasuis SH0165] gi|219691611|gb|ACL32834.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding protein 5 [Haemophilus parasuis SH0165] Length = 393 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T+++N+ + Sbjct: 42 YILMDYNSGAVLASLNPDQRQAPASLTKMMTSYVVGEALKTGKIKNSDLVTVTENSWGQK 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++++ K +IV S ND VAIAE + +E+ F+ MN + GL Sbjct: 102 FPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSMNKFVQKFGL 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF HG+ Y++ARDMAI+ I D P+ + K PN N Sbjct: 162 KNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKITQPNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 222 W--DKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESKKLLQWGF 279 Query: 265 YN 266 N Sbjct: 280 AN 281 >gi|306814866|ref|ZP_07449028.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101] gi|305852260|gb|EFM52712.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101] Length = 388 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N WA + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWA--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|73539986|ref|YP_294506.1| penicillin-binding protein 6 [Ralstonia eutropha JMP134] gi|72117399|gb|AAZ59662.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Ralstonia eutropha JMP134] Length = 399 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 132/246 (53%), Gaps = 15/246 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-----AMLTTPITISKN 85 + L D +G +A D PASLTKLMTAY+ F LKEK+ A++ T + + Sbjct: 46 WMLFDVTSGQALASQNADQRIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPTTLVLKVK 105 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + E S + +++ + L LIV+S ND A+A+AE++ +E+ FV MN ++ + Sbjct: 106 SDE---SRMFIEPNKPVSVQDLLMGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRM 162 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K K PN N Sbjct: 163 GMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIQDFPEYYGMYSQKEFTYNKIKQPNRNR 222 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSAS 258 + DG+KTG T ++G+ +++SA + G + LI+V++G R + S Sbjct: 223 LLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLISVVIGTTTEQVRTQESLK 282 Query: 259 LLSMGF 264 +L+ GF Sbjct: 283 ILNYGF 288 >gi|268590223|ref|ZP_06124444.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] gi|291314506|gb|EFE54959.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] Length = 401 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G ++A PD +PASLTK+MT+YV+ + K +T+ ++A + Sbjct: 43 FVLMDYNSGKILASGNPDERLDPASLTKIMTSYVIGQAVNAGKITPQDMVTVGEDA--WA 100 Query: 91 PSNSTFKKGSTMTLD-----NALKL---LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L + L L ++++S ND ++A+A+ + ++ FV MN Sbjct: 101 TGNPVLKGSSLMFLKPKDRVSVLDLNKGIVIQSGNDASIALADYVAGSQDSFVSLMNQYV 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +GL THF HG+ G Y+TARDMA+L+ + D P + K + PN Sbjct: 161 QKIGLKNTHFKTVHGLDSEGQYSTARDMALLTQAMIRDVPDEYALHKEKEFTFNKIRQPN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +G N+VASA +GD LI+V+LGA R S L Sbjct: 221 RNRLLW--NQNLKVDGVKTGHTSGAGHNLVASATEGDMRLISVVLGAPSDRVRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|302879284|ref|YP_003847848.1| Beta-lactamase [Gallionella capsiferriformans ES-2] gi|302582073|gb|ADL56084.1| Beta-lactamase [Gallionella capsiferriformans ES-2] Length = 381 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 6/238 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNA 86 Y L D ++ ++ PASLTKLMTAY+ FS +K+ K LT P+ +N+ Sbjct: 32 YLLYDFSSNQILVNQNGHARLEPASLTKLMTAYLTFSAIKQDKLKLDQTLTVPVDAPRNS 91 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S S K G ++T+D L LIV+S ND A +A + +E FV+ MN ++ +G Sbjct: 92 SG--ESRMLLKPGQSVTVDELLHGLIVQSGNDAANTLAVQISGSEATFVEQMNKEAQRMG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + THF+N G+ HY++A DMAIL+ + D+P++ F ++ N N Sbjct: 150 MKNTHFVNPVGMPNAQHYSSAYDMAILAAALIRDYPEHYPLFGLRDYTFNNVTQANRNRL 209 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + ADG+KTG T +GF +V SA + + LI+V+LGA N R S LL+ GF Sbjct: 210 LWLDPYADGLKTGHTETAGFCLVGSAKRDKRRLISVVLGADSDNQRASESQKLLNYGF 267 >gi|260434140|ref|ZP_05788111.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157] gi|260417968|gb|EEX11227.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157] Length = 388 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 5/243 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D P PAS++KLMT YV F L++ + L + +S++A Y S Sbjct: 33 VMDQTTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDEKLPVSEHAMSYGGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND V IAE+L TE F ++M +K +G++ + Sbjct: 93 TMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTQRAKQMGMNNS 152 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F N++G GH + +D+AIL+ R+ TDFP+Y F + E G+ N N + Sbjct: 153 TFANSNGWPAAGHMMSVKDLAILADRLITDFPEYYPLFAEETFEFDGRAPSNVNNRNPLL 212 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +GADG+KTG T +G+ +V SA QGD+ +I V+ G + R + + ++++ F N Sbjct: 213 KLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVLSGLENVARRAEEAEAVVNWSFRNF 272 Query: 268 TDR 270 +R Sbjct: 273 VER 275 >gi|308187437|ref|YP_003931568.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans C9-1] gi|308057947|gb|ADO10119.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans C9-1] Length = 388 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 131/267 (49%), Gaps = 26/267 (9%) Query: 19 FLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+A+ + +P+ + L+D TG V+ PD NPASLTKLMT YVV Sbjct: 16 WASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDR 75 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDI 119 + +KK +T+ K+A + N FK S M L KL +I+ S ND Sbjct: 76 AIDQKKISRDDMVTVGKDA--WAAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDA 133 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+A+ + +E FV MN+ + LGL THF HG+ G Y++A DMA LS I Sbjct: 134 CVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQYSSALDMAKLSRAIID 193 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 P + + K L G N N W L DG+KTG T +GFNI+AS + G Sbjct: 194 GEPDFYAMYSEKTLSWNGITQNNRNGLLW--DNNLHVDGLKTGHTETAGFNIIASNVVGK 251 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMG 263 LIAV++G R + + LL G Sbjct: 252 HRLIAVVMGGKSPKGREEQARKLLVWG 278 >gi|184159011|ref|YP_001847350.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|332874790|ref|ZP_08442660.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] gi|183210605|gb|ACC58003.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|322508991|gb|ADX04445.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii 1656-2] gi|323518975|gb|ADX93356.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii TCDC-AB0715] gi|332737051|gb|EGJ68008.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] Length = 439 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 17/284 (5%) Query: 19 FLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 L+IA E+ + +T++DT +G +IAE+ PASLTK+M AY+ +K K L Sbjct: 23 LLNIASESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAYIALKEIKAGKLKLN 82 Query: 78 TPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 IT + S ++ S K G +++D L LIV SAND AV +AE + FV Sbjct: 83 EVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAVTLAEKISGDVPHFV 142 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 Q MN ++ LG+ THF N G+ HYTTA D+++LS + P+Y+HY ++ Sbjct: 143 QRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQTPEYLHYSKMPSFSY 202 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALD 248 + + TN A+ DG+KTG+T A+G+N+ +A + + L+ ++LG Sbjct: 203 NQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSPNLPQRRLLVIVLGTPS 262 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 R +++ L+++ + D I +Q L E+P I Sbjct: 263 AVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|113969331|ref|YP_733124.1| penicillin-binding protein 6 [Shewanella sp. MR-4] gi|117919440|ref|YP_868632.1| penicillin-binding protein 6 [Shewanella sp. ANA-3] gi|113884015|gb|ABI38067.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-4] gi|117611772|gb|ABK47226.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. ANA-3] Length = 391 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +IAE NPASLTK+MT+YV+ +K +TISKNA Sbjct: 41 YVLMDYYSGQIIAEENAYESLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 101 FSDSSKMFIEVGKTVKVSDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H +TA DMA+L + D P+ + K G K N N Sbjct: 161 RDSYFENSHGLDSENHKSTAYDMALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278 >gi|15640963|ref|NP_230594.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9655406|gb|AAF94109.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 391 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + P+ + + G N N Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRXVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|33152983|ref|NP_874336.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus ducreyi 35000HP] gi|33149208|gb|AAP96725.1| penicillin-binding protein 5 [Haemophilus ducreyi 35000HP] Length = 393 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A P +PASLTK+MT+YVV +K+ K + +T+S+NA + Sbjct: 41 YVLMDYNSGAVLASLNPQQRQHPASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARK 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + ++ LI+ S ND AVA+AE +++ F+ MN + GL Sbjct: 101 FPGSSLMFLDLNTQVSVADLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 THF HG+ + Y++A DMAI+ + D P+ + K + KK PN N Sbjct: 161 KNTHFTTVHGLDEESQYSSALDMAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGL 220 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 LW--DKTMNVDGMKTGHTNQAGYNLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|258625415|ref|ZP_05720309.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258582326|gb|EEW07181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] Length = 391 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + +LG+ Sbjct: 102 FPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|258621965|ref|ZP_05716994.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] gi|258585718|gb|EEW10438.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] Length = 391 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + +LG+ Sbjct: 102 FPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y+T D+A+L + D P+ + + G N N Sbjct: 162 KDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 222 W--DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 279 >gi|317121980|ref|YP_004101983.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591960|gb|ADU51256.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 438 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 135/241 (56%), Gaps = 12/241 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D P +PAS++KLMT + ++ + L +T+S A P S Sbjct: 90 VMDAASGRVLWAKNADEPRHPASISKLMTLLLTLEAIQAGQIRLQDQVTVSPRAQGTPGS 149 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +T+++ +K + V SAND VA+AE + +FVQ MN ++ LGL+ T F Sbjct: 150 TAFLEVGERITVEDLIKAVAVASANDACVALAEYISGDVGRFVQRMNRRAQELGLTRTRF 209 Query: 153 MNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKY--PNT 203 ++ HG+ Q G+ +ARD+A+LS + P+ + Y I KG + +++ NT Sbjct: 210 VDPHGLTDQPGNRMSARDIAVLSRYMIQYHPEILRYTSIWEDWLRKGTD---REFWLTNT 266 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N V + G DG+KTG T SG ++V +A +GD I V+LG+ D NTR + ++ LL Sbjct: 267 NKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGSPDSNTRWREASRLLDWA 326 Query: 264 F 264 F Sbjct: 327 F 327 >gi|332527505|ref|ZP_08403557.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] gi|332111912|gb|EGJ11890.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] Length = 381 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---S 87 Y L+D + V+AE D P +PASLTKLM+AY+VF+ +++ K L + +S A Sbjct: 31 YILIDVSANQVLAERDADTPADPASLTKLMSAYLVFNAVRDGKLALDQRVPVSTRAWDER 90 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +Y S +D L+ +IV+S ND VA+AE++ T + FV MN ++ GL Sbjct: 91 KYGGSLMFIDTRMQPRVDELLRGMIVQSGNDATVALAEAVGGTVENFVAMMNKQAQAWGL 150 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T F N G+ + GH TT R++A ++ RI D PQ+ + + + N N + Sbjct: 151 KNTQFRNPSGLTEAGHKTTPREIAYIATRIIQDHPQFYPIYSERAFAFNNIRQDNRNLLL 210 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNKVSASLLSMG 263 G DGMKTG+T A+G+ +VASA + G + L++V++G R S LL+ G Sbjct: 211 GRDPSVDGMKTGYTEAAGYCLVASAQRDMPNGKRRLLSVVMGTASMQARANESQKLLNWG 270 Query: 264 F 264 + Sbjct: 271 Y 271 >gi|149914154|ref|ZP_01902685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b] gi|149811673|gb|EDM71506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b] Length = 388 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D TG V+ D P PAS++KLMT YV F +++ + L + +S++A + S Sbjct: 33 VFDMKTGTVLLSKNADAPLPPASMSKLMTLYVTFEAIRDGRLSLDDRLPVSQHAMSFGGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND V +AE+L TE+ F ++M ++ +G++ + Sbjct: 93 TMFLDTTDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTEQGFARYMTQRAQQMGMTNS 152 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 FMN+ G GH + RD+A+LS I DFP++ F E G+ NT N + Sbjct: 153 TFMNSSGWPAAGHRMSMRDLALLSRHIIEDFPEFYPMFAETKFEFDGRAPQNTRNRNPIL 212 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G +GADG+KTG T +G+ +V SA QGD+ +I VI G R R + S ++++ F Sbjct: 213 GLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLETRQARAEESEAIVNWSF 269 >gi|307130748|ref|YP_003882764.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] gi|306528277|gb|ADM98207.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] Length = 399 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 20/276 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +V+ A L + P L +T P + L+D +G V+AE+ D +PASLTK+ Sbjct: 10 VVVAAATALMTVSPGLRAEQTPPPPQIEAKAFILIDYASGRVLAESNADARLDPASLTKI 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------L 111 M++YV+ +K K +T+ K+A + N + S M L ++ + Sbjct: 70 MSSYVIGQAIKVGKITPEDKVTVGKDA--WATGNPALRGSSLMFLKPGDQIPVSELNKGM 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA Sbjct: 128 VIQSGNDASIALADYVAGSQDAFVSLMNQYAATLGLANTHFLTVHGLDTPGQYSTARDMA 187 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNI 228 L+ + D P K + PN N W+ L DG+KTG+T +G ++ Sbjct: 188 RLTQALIRDVPGEYALHSEKEFTFNNIRQPNRNRLLWSGN--LRVDGVKTGYTGGAGHSL 245 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 VASA+ D LI+V+LGA R + S LL+ GF Sbjct: 246 VASAVDSDMRLISVVLGAPSDAVRFRESEKLLTWGF 281 >gi|262403437|ref|ZP_06079995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] gi|262349941|gb|EEY99076.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] Length = 389 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVKFSMACMAFV-PTLGFSALSVIPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + GS + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHAQDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNPNLYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGQAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA GD LI+V++G+ R S LLS GF Sbjct: 244 SATSGDMRLISVVMGSKSTKIREAESKQLLSYGF 277 >gi|114046558|ref|YP_737108.1| penicillin-binding protein 6 [Shewanella sp. MR-7] gi|113888000|gb|ABI42051.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-7] Length = 391 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +IAE NPASLTK+MT+YV+ +K +TISKNA Sbjct: 41 YVLMDYYSGQIIAEENAYESLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKN 100 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G T+ + + + +I++S ND VA+AE + TE FV MN+ +K LG+ Sbjct: 101 FSDSSKMFIEVGKTVKVSDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N+HG+ H +TA DMA+L + D P+ + K G K N N Sbjct: 161 RDSYFENSHGLDAENHKSTAYDMALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+VASA + LI+V++G R S LL+ GF Sbjct: 221 W--DNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278 >gi|238762044|ref|ZP_04623017.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] gi|238699772|gb|EEP92516.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] Length = 397 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + L + K ++++S ND ++A+A+ + ++ FV MN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNKYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T+FM HG+ G Y+TA DMA+L + D P + K + N N Sbjct: 163 LGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRN 222 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W T + DGMKTG+T +G N+VASA G LI+V+LGA R S LL+ Sbjct: 223 RLLW--NTNINVDGMKTGYTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 280 Query: 262 MGF 264 GF Sbjct: 281 WGF 283 >gi|167856207|ref|ZP_02478943.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus parasuis 29755] gi|167852662|gb|EDS23940.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus parasuis 29755] Length = 393 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T+++N+ + Sbjct: 42 YILMDYNSGAVLASLNPDQHQAPASLTKMMTSYVVGEALKTGKIKNSDLVTVTENSWGQK 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++++ K +IV S ND VAIAE + +E+ F+ MN + GL Sbjct: 102 FPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSMNKFVQKFGL 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF HG+ Y++ARDMAI+ I D P+ + K PN N Sbjct: 162 KNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKITQPNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 222 W--DKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESKKLLQWGF 279 Query: 265 YN 266 N Sbjct: 280 AN 281 >gi|291618006|ref|YP_003520748.1| DacD [Pantoea ananatis LMG 20103] gi|291153036|gb|ADD77620.1| DacD [Pantoea ananatis LMG 20103] Length = 386 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 134/267 (50%), Gaps = 26/267 (9%) Query: 19 FLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+A+ + +P+ + L+D TG V+ PD NPASLTKLMT YVV Sbjct: 14 WASLAQADDMPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDR 73 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDI 119 + +KK +T+ K+A + N FK S M L KL +I+ S ND Sbjct: 74 AIDQKKITRDDMVTVGKDA--WAAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDA 131 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+A+ + ++ FV+ MN+ + LGL+ THF HG+ G +++A DMA LS I Sbjct: 132 CVALADYVAGSQDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIID 191 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 P + ++ K L G N N W L DG+KTG T +GFNI+AS + G Sbjct: 192 GEPDFYAMYREKTLTWNGITQNNRNGLLW--DNSLHVDGLKTGHTETAGFNIIASNVVGQ 249 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMG 263 LIAV++G R + + LL G Sbjct: 250 HRLIAVVMGGKSAKGREEQARKLLVWG 276 >gi|163801380|ref|ZP_02195279.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] gi|159174869|gb|EDP59669.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] Length = 388 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 145/272 (53%), Gaps = 8/272 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R + + + S+ P L++ N + Y L+D +G +IAE PASL Sbjct: 4 LRTRFTFVCLLLASSCLPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASL 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA +++P S+ F + +T+ N ++ +I+ Sbjct: 64 TKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPNDEITIANLMRGVII 123 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L Sbjct: 124 QSGNDACVALAEHVAGSEGAFVSLMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATL 183 Query: 174 SWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 I D P+ + K + K +Y + DG KTG+T +G+++V+SA Sbjct: 184 MQAIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSA 243 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 QG LI+V++G + +R S +LLS GF Sbjct: 244 KQGKMRLISVVMGTPSKQSRITQSKNLLSYGF 275 >gi|54309028|ref|YP_130048.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46913460|emb|CAG20246.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 404 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D NTG V+ E + NPASLTKLMT+YV +K + IS+NA Sbjct: 54 YVLMDYNTGRVLVEKNANVKLNPASLTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARN 113 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+ +++ + + LI++S ND +VAIAE + ++ FV MN+ +KNLG+ Sbjct: 114 FSDSSKMFIEVGTEVSMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGM 173 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NAHG+ Y+T D+A+L + D P + + N N + Sbjct: 174 NNSQFANAHGLDNPNLYSTPYDIALLGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLL 233 Query: 208 GT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G + DGMKTG+T +G+++ +SA QG+ LI+V++G+ +R S LL+ GF Sbjct: 234 GDKSINVDGMKTGYTSGAGYSLASSATQGNMRLISVVMGSSSTKSREAESKQLLNYGF 291 >gi|260556621|ref|ZP_05828839.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606] gi|260409880|gb|EEX03180.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606] Length = 439 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 21/298 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K L IT + S ++ S K G +++D L LIV SAND AV Sbjct: 69 IALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 128 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + FV+ MN ++ LG+ THF N G+ HYTTA D+++LS + Sbjct: 129 TLAEKISGDVPHFVKRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQAVIHQT 188 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 189 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSPNL 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + L+ ++LG R +++ L+++ + D I +Q L E+P I Sbjct: 249 PQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAELPVI 299 >gi|330994628|ref|ZP_08318551.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp. SXCC-1] gi|329758269|gb|EGG74790.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp. SXCC-1] Length = 428 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 1/237 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + ++D TG V+ E D P+SLTK+MTAY+VF L+ + L + +S+ A Sbjct: 84 WACIVDYTTGAVLLEKAADERMPPSSLTKMMTAYIVFGMLRAGRLTLEQTLPVSEKAWRM 143 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S T+ + + ++ ++++S ND + +AE + +E++FV MN + LG+S Sbjct: 144 QGSKMFVPLNGTVAVSDLIQGMVIQSGNDACIVLAEGIAGSEEQFVGLMNAKAAELGMSN 203 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+NA G GHY +ARD+A ++ + DFP Y H+F K N N V Sbjct: 204 SHFLNATGWPMDGHYMSARDVATIAMHLIHDFPDYYHFFSEKSFRYNKISQENRNVLVVR 263 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T A GF + ASA +G ++ I G N R + L F N Sbjct: 264 GV-ADGLKTGHTDAGGFGLCASAERGGNRVVMAINGLPSSNARAQEGERLFEWSFVN 319 >gi|307265140|ref|ZP_07546699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919762|gb|EFN49977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 381 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ E +P PAS+TK+MT + + K +T + SK+A + + Sbjct: 38 LIEANTGQILYEKDSHNPLPPASVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPEEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 217 KGADGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFAN 272 >gi|167040194|ref|YP_001663179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|256752060|ref|ZP_05492928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|300914278|ref|ZP_07131594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724486|ref|YP_003904237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|166854434|gb|ABY92843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|256749070|gb|EEU62106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|300889213|gb|EFK84359.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581547|gb|ADN54946.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] Length = 381 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++TNTG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 38 LIETNTGQILYEKDSHKPLPPASVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPEEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 217 KGVDGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFAN 272 >gi|260598500|ref|YP_003211071.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter turicensis z3032] gi|260217677|emb|CBA32019.1| D-alanyl-D-alanine carboxypeptidase dacD [Cronobacter turicensis z3032] Length = 412 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A N NPASLTKLMT YVV + + +T+ K+A + Sbjct: 63 YVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDA--WA 120 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +T+ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 121 KDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVSMMNDYV 180 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G +++A D+A+LS I P + H + K L G N Sbjct: 181 QKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQN 240 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +GFN++AS++ G + LIAVI+GA R + L Sbjct: 241 RNGLLW--DKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKL 298 Query: 260 LSMG 263 L G Sbjct: 299 LHWG 302 >gi|257413914|ref|ZP_04744661.2| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257201876|gb|EEV00161.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 402 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 137/244 (56%), Gaps = 8/244 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E +PAS+TK+MT ++F L K+ L +T+S+ A+ Sbjct: 50 PSAILMEASTGAVVYEKNSHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAAS 109 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ Sbjct: 110 MGGSQVFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMN 169 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---Y 200 T+F+N G+ GH T+A D+A++S + T +P+ Y I I KG Sbjct: 170 DTNFVNCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGL 229 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL Sbjct: 230 TNTNKLIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLL 289 Query: 261 SMGF 264 + GF Sbjct: 290 NYGF 293 >gi|90415028|ref|ZP_01222988.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90323842|gb|EAS40448.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 393 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D NTG V+ E + NPASLTKLMT+YV +K + IS+NA Sbjct: 43 YVLMDYNTGRVLVEKNANVKLNPASLTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARN 102 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+S+ + G+ +++ + + LI++S ND +VAIAE + ++ FV MN+ +KNLG+ Sbjct: 103 FSDSSKMFIEVGTEVSMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NAHG+ Y+T D+A+L + D P + + N N + Sbjct: 163 NNSQFANAHGLDNPNLYSTPYDIALLGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLL 222 Query: 208 GT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G + DGMKTG+T +G+++ +SA QG+ LI+V++G+ +R S LL+ GF Sbjct: 223 GDKSINVDGMKTGYTGGAGYSLASSATQGNMRLISVVMGSSSTKSREAESKQLLNYGF 280 >gi|326391736|ref|ZP_08213259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325992236|gb|EGD50705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 381 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 38 LIEANTGQILYEKDSHKPLPPASVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPEEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 217 KGADGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFAN 272 >gi|323499952|ref|ZP_08104910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] gi|323314969|gb|EGA68022.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] Length = 392 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y LLD ++G V+A+ + +PASLTK+MT+YV+ L+ L +TISKNA Sbjct: 43 YVLLDYHSGKVLAQKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ +++ + +I++S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRIYSDKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKSANARKSESKKLLSYGF 280 >gi|331005765|ref|ZP_08329124.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC1989] gi|330420402|gb|EGG94709.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC1989] Length = 386 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 1/262 (0%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F++ ++ MLS P + A Y L+DTNTG V+ E D PAS+TK+MT+ Sbjct: 10 FILSCSVVMLSYARPVIIPAPPQLAATAYFLMDTNTGRVLVEKNADMQLPPASMTKMMTS 69 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+V S ++ +TIS A + S ++G+ +++ + L+ +I++S ND ++A Sbjct: 70 YIVSSEIERGSINPDDLVTISVKAWKKGGSKMFVREGTQVSIKDLLRGVIIQSGNDASIA 129 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN + LG++ T F NA G GH ++ RD+AIL + DFP Sbjct: 130 LAEHIAGSEAAFADIMNQQAALLGMTNTVFKNATGWPADGHISSVRDLAILGQALIKDFP 189 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 ++ + K G PN N + T DG+KTG T +GF + AS+ + L++V Sbjct: 190 EHYKLYSEKYFTYNGINQPNRNKLLFTDKSVDGIKTGHTEEAGFGLTASSERDGMRLVSV 249 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 + G + R S LLS GF Sbjct: 250 VTGTRSESARAAESQKLLSYGF 271 >gi|157161502|ref|YP_001458820.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli HS] gi|157067182|gb|ABV06437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS] Length = 388 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 144/287 (50%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 ++GFN++ASA+ G + LIAVI+GA R + + LL G N T Sbjct: 237 SSAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283 >gi|28199163|ref|NP_779477.1| penicillin-binding protein 6 precursor [Xylella fastidiosa Temecula1] gi|182681894|ref|YP_001830054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23] gi|28057261|gb|AAO29126.1| penicillin-binding protein 6 precursor [Xylella fastidiosa Temecula1] gi|182632004|gb|ACB92780.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23] gi|307578148|gb|ADN62117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 396 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 139/240 (57%), Gaps = 7/240 (2%) Query: 31 YTLLDTNTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D +G V+A EN H PASLTK+MT+YV+ + +K K + +++NA Sbjct: 47 WVVMDYASGQVLAGENIHTHL-APASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRK 105 Query: 87 --SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ Sbjct: 106 GGAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQR 165 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +G+ +HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N Sbjct: 166 IGMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRN 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 226 LLLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGF 285 >gi|299769193|ref|YP_003731219.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1] gi|298699281|gb|ADI89846.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1] Length = 439 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 156/318 (49%), Gaps = 32/318 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVF-----SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + LK+++ + TP+ ++ S K G +++D L LIV SAND Sbjct: 69 IALKEIKAGKLKKEEIITATPVV---GVVQWDESQMYLKAGEQISVDQLLAGLIVMSAND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L + Sbjct: 126 AAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLLGQAVI 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ---- 234 + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 186 KETPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFS 245 Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 + L+ ++LG R +++ L+++ + D I +Q L E+P Sbjct: 246 SDLAQRRLLVIVLGTPSAVKRAEIADKLMNLAYTYTRDEVIIP-------EQKLIAELPV 298 Query: 292 ISE-----EVCTTQKEII 304 + +V T Q I+ Sbjct: 299 VKSTLKMFKVATKQPTIV 316 >gi|254478674|ref|ZP_05092045.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium pacificum DSM 12653] gi|214035361|gb|EEB76064.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium pacificum DSM 12653] Length = 377 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 33 LMEAETGEILYEKDIHKPLPPASVTKVMTLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 93 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH TT D+A++S + P Y K ++ K+ NTN + + Sbjct: 153 KNATGLPEEGHLTTVYDIAMISREL-VKHPSIFKYLTNKIDSLRNGKFSLINTNKLLWRY 211 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 212 QGVDGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFNETAKLLDYGFAN 267 >gi|323940908|gb|EGB37096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] Length = 388 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAERLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|270261117|ref|ZP_06189390.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13] gi|270044601|gb|EFA17692.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13] Length = 401 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G ++ E D +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 FVLMDYNSGKILTEGNADTRLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M + ++ ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 101 TGNPALRGSSLMFIKPGDQVPVMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL THF+ HG+ G Y+TARDMA+LS + D P + K + N Sbjct: 161 KSLGLQNTHFLTVHGLDAEGQYSTARDMALLSQALIRDVPVEYALHKEKEFTFNKIRQVN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG+T +G N+VASA G LI+V+LGA R S L Sbjct: 221 RNRLLWS--SNLNVDGIKTGYTGGAGHNLVASATDGPMRLISVVLGAPSDRIRFSESEKL 278 Query: 260 LSMGF 264 L+ GF Sbjct: 279 LTWGF 283 >gi|94501220|ref|ZP_01307742.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65] gi|94426647|gb|EAT11633.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65] Length = 380 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+ E+ D PASLTKLMTA++ F L L + +S A + Sbjct: 34 YILMDANSGEVLVEHNADKVLPPASLTKLMTAFIAFEELSYGNIALDEKVRVSVKAWKAE 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+T+ +++ L+ +I++S ND ++A+AE + TE F MN + +LG++ + Sbjct: 94 GSRMFIREGTTVPVEDLLRGIIIQSGNDASIAMAEHISGTESSFADIMNQYAVSLGMTNS 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F NA G+ GH+++ARDMA L+ I + Q+ + K + + N N + Sbjct: 154 QFKNATGLPSEGHHSSARDMATLARAIIFNHKQHYPIYSEKKFKYNNIEQTNRNRLLFWN 213 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA D LIAV++GA R + S LL+ GF Sbjct: 214 DKVDGLKTGHTEEAGYCLVSSAQDEDMRLIAVVMGANSERARARESNKLLTYGF 267 >gi|254509295|ref|ZP_05121387.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16] gi|219547783|gb|EED24816.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16] Length = 293 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L+ L +TISKNA Sbjct: 43 YVLMDFHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ +++ + +I++S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KDTHFANVHGLDNPDLYSTPYDMALLGSALIRDVPDEYRIYSEKKYTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANARKSESKKLLSYGF 280 >gi|84387870|ref|ZP_00990884.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] gi|84377216|gb|EAP94085.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] Length = 373 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E NPASLTKLMT+YV ++ + IS+NA Sbjct: 24 YVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMQRGNISADDQVRISENAWAKN 83 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T + + + + LI++S ND +VAIAE + ++ FV MN+ + +L L Sbjct: 84 FPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWATSLKL 143 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF NAHG+ Y+T D+A+L I D P + + G N N + Sbjct: 144 ENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNGITQHNRNGLL 203 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ +SA QG+ LIAV++GA +R S LLS GF Sbjct: 204 RDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 261 >gi|291539061|emb|CBL12172.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 348 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG V+ E P +PAS+TK+MT ++F L K+ L +T+S+ A+ S + Sbjct: 5 TGAVVYEKNPHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASIGGSQVFLE 64 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+N G Sbjct: 65 PGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFVNCCG 124 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNTNWAVGT 209 + GH T+A D+A++S + T +P+ Y I I KG NTN + Sbjct: 125 LDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNKLIKH 184 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF Sbjct: 185 YQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGF 239 >gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] gi|133740058|emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase) transmembrane protein [Herminiimonas arsenicoxydans] Length = 382 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +A+A+LS F + A T + LLD + ++A N D PASLTK Sbjct: 1 MKKLFAALAVAVLSLSTAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASLTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--KKGSTMTLDNALKLLIVKSA 116 LMTAYV FS +++K+ L IT+S NA + P +S + +++++ L LIV+S Sbjct: 61 LMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQSG 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+AE++ TE F MN ++ +G+ +T F N HG+ +Y+TARD+A+L+ Sbjct: 121 NDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLATH 180 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234 + +D P++ + K K N N + DGMKTG+T +G+ ++++A + Sbjct: 181 LVSDHPEFYKIYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRPN 240 Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 ++ LI+V++G R + S LL+ GF N+ Y ++++ + PN+ Sbjct: 241 GANERRLISVVIGTASDQARAQESQKLLNWGFQ--------NFDAVKLYSKDVAIDTPNV 292 >gi|302392458|ref|YP_003828278.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302204535|gb|ADL13213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 397 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 7/240 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ +G VI E PAS+TK MT + + E KA L +T S+ A+ Sbjct: 41 VLMEAKSGKVIYEKNAHEELPPASITKTMTLLLTMEAIDEGKANLDEAVTTSEYAAGMGG 100 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + G M L+ +K + + SAND VA+AE L TE+ FV MN + LGL TH Sbjct: 101 SQIWLEPGEEMKLEEMIKAIAIVSANDACVAVAEHLYGTEEVFVNAMNEKADELGLDDTH 160 Query: 152 FMNAHGVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQ--IKGLEIKGKKYPNTN 204 F+N +G+ + G+YT+A D+ ++S + T +PQ + Y + I L NTN Sbjct: 161 FVNTNGLPVEDSDKRGNYTSAHDVGVMSRELVTKYPQVLDYTKIWIDHLRDGDSFLRNTN 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + GADG+KTG T +GF +VA+A + IAV++ +TR K + LLS GF Sbjct: 221 NLVRFYKGADGLKTGHTSQAGFGVVATAERKGLRFIAVVMKEETSDTRFKEAGELLSYGF 280 >gi|255744731|ref|ZP_05418682.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262161135|ref|ZP_06030246.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] gi|255737762|gb|EET93156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262028885|gb|EEY47538.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] Length = 347 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA +P Sbjct: 1 MDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPD 60 Query: 92 SNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ + Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 HF N+HG+ Y+T D+A+L + D P+ + + G N N W Sbjct: 121 HFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLW-- 178 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 179 DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 235 >gi|304310091|ref|YP_003809689.1| Penicillin-binding protein 5 precursor (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium HdN1] gi|301795824|emb|CBL44023.1| Penicillin-binding protein 5 precursor (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium HdN1] Length = 385 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 129/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L++ ++G V+ E+ D PASLTK+MT+YV +KE A + +S+ A Sbjct: 38 WILIEPSSGQVLVEHNADEQLPPASLTKMMTSYVAADKIKEGLAGWDDEVLVSEKAWRMG 97 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ + + + ++ +I++S ND +VA+AE + +E+ F MN T+K +G++ T Sbjct: 98 GSKMFIRVGTQVKIRDLMRGIIIQSGNDASVALAEHIAGSEESFADLMNQTAKRIGMTHT 157 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H++NA G+ HYTTARD+AIL+ + D P+ + K K PN N + Sbjct: 158 HYVNATGLPDPSHYTTARDLAILAQHVIFDHPEDYELYSEKEFLYNNIKQPNRNLLLWRD 217 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA + L+AV++ R + LL+ GF Sbjct: 218 NSVDGIKTGHTKEAGYCLVASAKRDGMRLVAVVMNTNSEKARASETMKLLTYGF 271 >gi|20807763|ref|NP_622934.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20516318|gb|AAM24538.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 377 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 33 LMEAETGEILYEKDIHKPLPPASVTKVMTLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 93 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH TT D+A++S + P Y K ++ K+ NTN + + Sbjct: 153 KNATGLPEEGHLTTVYDIAMISREL-VKHPSIFKYLTNKIDSLRNGKFSLINTNKLLWRY 211 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 212 KGVDGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFNETAKLLDYGFAN 267 >gi|146308809|ref|YP_001189274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina ymp] gi|145577010|gb|ABP86542.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Pseudomonas mendocina ymp] Length = 386 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 125/234 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ E+ D PASLTKLMTAY+ + + + + +S+ A Sbjct: 40 YVLMDAASGQVLVESNGDQRLPPASLTKLMTAYIATLEINRGQIKESDMVRVSEKAWRKG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +++D+ L +I++S ND ++AIAE + +E F MN ++ LG+S T Sbjct: 100 GSKMFIEVGKEVSVDDLLHGIIIQSGNDASIAIAEHIAGSEDAFADMMNTHAQRLGMSNT 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HFMN+ G HY++A DMA L+ I + P + ++ K G K PN N + Sbjct: 160 HFMNSTGWPDPEHYSSAHDMAKLARAIIYEDPAHYDIYKQKEFLWNGIKQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ Q LIA + G + R LL+ GF Sbjct: 220 STVDGLKTGHTEEAGYCLVASAVRDGQRLIAAVFGTVSEQARAAEVQKLLTYGF 273 >gi|304395655|ref|ZP_07377538.1| Beta-lactamase [Pantoea sp. aB] gi|304356949|gb|EFM21313.1| Beta-lactamase [Pantoea sp. aB] Length = 420 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 129/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ +A + Sbjct: 66 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDLVTVGPDA--WA 123 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 124 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYV 183 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 184 KALGLQNTHFGTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMN 243 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S LL+ Sbjct: 244 RNGLLWDTNLNVDGIKTGHTNSAGYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLT 303 Query: 262 MGF 264 GF Sbjct: 304 WGF 306 >gi|83589906|ref|YP_429915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83572820|gb|ABC19372.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 385 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 150/275 (54%), Gaps = 28/275 (10%) Query: 6 VIIAMAMLSNIFPFLS---IAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 V++ +A++ +F FL + ++L P L++ +TG V+ E PAS TK Sbjct: 7 VVLILALV--VFCFLGSSPVKAADELQITAPAAVLMEASTGQVLYERGAREKRPPASTTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + + L TPI +S+NA+ P ++ +KG +TL + +K +++S ND Sbjct: 65 IMTAILALELGR-----LDTPIKVSENAATTPGASIYLQKGEVLTLGDLVKGALLESGND 119 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VAIAE L +E F MN + LG THF N +G+ GHYT+A D+A+++ R Sbjct: 120 ATVAIAEGLAGSEAGFAFLMNRKAWLLGARTTHFNNPNGLPDPGHYTSAYDLALIA-RYA 178 Query: 179 TDFPQYMHYF-----QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 P + QI G + Y NTN + ++ GADG+KTG T A+G +VASA Sbjct: 179 LGNPVFRRLVATVEDQIPGPDGVRHLY-NTNRLLESYPGADGVKTGTTAAAGQCLVASAT 237 Query: 234 QGDQSLIAVILGALDR--NTRNKVSASLLSMGFYN 266 +G + LIAV+LG+ DR +TR +LL GF N Sbjct: 238 RGGRQLIAVVLGSADRYGDTR-----TLLDYGFKN 267 >gi|289663962|ref|ZP_06485543.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 371 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 22 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 81 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 82 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 141 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 142 GMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRNR 201 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 202 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 260 >gi|262394994|ref|YP_003286848.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|262338588|gb|ACY52383.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 392 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +IV+S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPESSKMFIEVGTTVKVRDLNRGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + +HF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 TNSHFANVHGLDNAELYSTPYDMALLGKALIRDVPNEYRVYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|206577494|ref|YP_002239713.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|288936555|ref|YP_003440614.1| beta-lactamase [Klebsiella variicola At-22] gi|290510389|ref|ZP_06549759.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|206566552|gb|ACI08328.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|288891264|gb|ADC59582.1| Beta-lactamase [Klebsiella variicola At-22] gi|289777105|gb|EFD85103.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 399 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AEN D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 45 WVLIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MNN Sbjct: 103 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYV 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 163 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLN 222 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 223 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRESESKKLLT 282 Query: 262 MGF 264 GF Sbjct: 283 WGF 285 >gi|269965477|ref|ZP_06179596.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269829956|gb|EEZ84186.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 392 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +IV+S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVRDLNRGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + +HF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 TNSHFANVHGLDNAELYSTPYDMALLGKALIRDVPNEYRVYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|226952491|ref|ZP_03822955.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ATCC 27244] gi|226836762|gb|EEH69145.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ATCC 27244] Length = 445 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 148/276 (53%), Gaps = 16/276 (5%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A L NI P ET + ++++D +G +IAE+ PASLTK+M AYV Sbjct: 25 LAHATLLNISP-----ETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALK 79 Query: 68 FL---KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + K +K +TT ++ N + S K+G +++D L LIV SAND A+ +A Sbjct: 80 EIEAGKLRKEDVTTATSVV-NTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLA 138 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + +F+ MN ++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y Sbjct: 139 EKISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEY 198 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQ 237 ++Y ++ + + TN A+ ADG+KTGFT A+G+N+ +A + + Sbjct: 199 LYYSKMPSFSYNQRFHRATNLALKIDPTADGLKTGFTKAAGYNLALTAERPTLNPHIDKR 258 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI ++LG + TR +V+ L+++ + D + I Sbjct: 259 RLIVIVLGTPNAITRAEVANKLMNLAYAYTRDEEVI 294 >gi|237732061|ref|ZP_04562542.1| DacD [Citrobacter sp. 30_2] gi|226907600|gb|EEH93518.1| DacD [Citrobacter sp. 30_2] Length = 421 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 146/305 (47%), Gaps = 35/305 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + K+ T +T+ ++A + Sbjct: 72 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDA--WA 129 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MNN Sbjct: 130 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYV 189 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P + H + K L G N Sbjct: 190 QKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQN 249 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + L Sbjct: 250 RNGLLW--DKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKL 307 Query: 260 LSMGFYN-------------------KTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTT 299 L G N D++KI+ +DF+ EV NI + Sbjct: 308 LQWGQQNFDTVQVLRSGKQVGIERIWYGDKEKISLGTEQDFWMALPKAEVANIKAKYVLD 367 Query: 300 QKEII 304 +KE++ Sbjct: 368 KKELV 372 >gi|156933395|ref|YP_001437311.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter sakazakii ATCC BAA-894] gi|156531649|gb|ABU76475.1| hypothetical protein ESA_01208 [Cronobacter sakazakii ATCC BAA-894] Length = 390 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A N NPASLTKLMT YVV + + +T+ K+A + Sbjct: 41 YVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +T+ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G +++A D+A+LS I P + H + K L G N Sbjct: 159 QKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +GFN++AS++ G + LIAVI+GA R + L Sbjct: 219 RNGLLW--DKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKL 276 Query: 260 LSMG 263 L G Sbjct: 277 LHWG 280 >gi|283479159|emb|CAY75075.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia pyrifoliae DSM 12163] Length = 411 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 56 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDA--WA 113 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + +++ FV MNN Sbjct: 114 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYV 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 174 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 233 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 234 RNGLLWDTSLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 293 Query: 261 SMGF 264 + GF Sbjct: 294 TWGF 297 >gi|51892953|ref|YP_075644.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51856642|dbj|BAD40800.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 403 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 136/248 (54%), Gaps = 8/248 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +G VI + NPAS+TK+MT V F +++ K L P+TIS+ A Sbjct: 49 PSAILMEPLSGRVIYQKNAHERRNPASVTKIMTLIVAFDAIRDGKVSLKDPVTISEEAKR 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P + G T +L+ L + V SAND AVA+AE + + FV MN +K LG++ Sbjct: 109 QPGTTIFADVGETFSLEELLLSVAVGSANDAAVAVAEHVAGSVDAFVALMNKKAKELGMN 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYP- 201 T FMN G+ GHY+TA D+A++S +P+ + I G E+ G K+ Sbjct: 169 DTQFMNPTGLSAEGHYSTAYDIALMSRHAVLHYPELVKLTAIYGAELNVPWRKNGPKFQL 228 Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + + GADG+KTG+T A+G+ + A+A+Q + +IAV++GA RN A LL Sbjct: 229 WNNNKLLTWYPGADGLKTGWTQAAGYCLAATAVQNNTRMIAVVMGAESAKQRNIEVARLL 288 Query: 261 SMGFYNKT 268 GF N T Sbjct: 289 DYGFANYT 296 >gi|218558891|ref|YP_002391804.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli S88] gi|218365660|emb|CAR03397.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli S88] Length = 388 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|218133227|ref|ZP_03462031.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC 43243] gi|217992100|gb|EEC58104.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC 43243] Length = 400 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 142/270 (52%), Gaps = 21/270 (7%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG + E D +PAS+TK+MT ++F L E K L +T+S++A+ Sbjct: 47 PSVILMEASTGKTVYEKNADETLHPASITKIMTLILIFDALSENKITLEENVTVSEHAAS 106 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T++ +K + V SAND +VA+AE + +E+ FV MN ++ LG+S Sbjct: 107 MGGSQVFLEAGEKQTVNTMIKCISVASANDASVAMAEHIWGSEQTFVDKMNERAQGLGMS 166 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---Y 200 THF+N G+ GH TARD+AI+S + T +PQ Y I I +G+ Sbjct: 167 GTHFVNCCGLDTDGHMMTARDVAIMSRELITRYPQIHEYSGIWMDTITHNTRRGESEFGL 226 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + A G+KTG T + + A+A + LIAV++ A + TR K + SLL Sbjct: 227 SNTNKLIKQYEWATGLKTGSTGLAKCCLSATAEKDGIELIAVVMAAPNSKTRFKDAISLL 286 Query: 261 SMGFYNKTDRKKINYIIKDFYQQN--LSNE 288 + G Y + D Y+ N LS E Sbjct: 287 NYG-----------YGVVDIYRDNAWLSQE 305 >gi|325915034|ref|ZP_08177363.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937] gi|325538732|gb|EGD10399.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937] Length = 401 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKNSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDTSEEQRATDSLALLNWGF 290 >gi|269138268|ref|YP_003294968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|267983928|gb|ACY83757.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|304558304|gb|ADM40968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 387 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 16/248 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++A PD NPASLTKLMT YVV L + + L ++I +A + Sbjct: 36 WVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVEQALDQGRIGLNDRVSIGDDA--WA 93 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M T+ + ++ +I+ S ND VA+++ + + FV+ MN Sbjct: 94 TRNPLFKGSSLMFLKPGDRATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNADV 153 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 L L THF HG+ G Y++ARD+A+L+ I T Y H++ K L G N Sbjct: 154 SALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQNN 213 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSAS 258 N W L DGMKTG T ++GFN+VA+++ Q LIAV++GA R + + Sbjct: 214 RNGLLW--DQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREQQAKK 271 Query: 259 LLSMGFYN 266 LL G N Sbjct: 272 LLLWGERN 279 >gi|113866332|ref|YP_724821.1| D-alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia eutropha H16] gi|113525108|emb|CAJ91453.1| D-Alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia eutropha H16] Length = 399 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 15/246 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-----AMLTTPITISKN 85 + L D +G +A D PASLTKLMTAY+ F LKEK+ A++ T + + Sbjct: 46 WMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPTSVVLKVK 105 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + E S + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN ++ + Sbjct: 106 SDE---SRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRM 162 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + PN N Sbjct: 163 GMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIRQPNRNR 222 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSAS 258 + DG+KTG T ++G+ +++SA + G + LI++++G R + S Sbjct: 223 LLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQESLK 282 Query: 259 LLSMGF 264 +L+ GF Sbjct: 283 ILNYGF 288 >gi|259909131|ref|YP_002649487.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia pyrifoliae Ep1/96] gi|224964753|emb|CAX56270.1| penicillin-binding protein 5 [Erwinia pyrifoliae Ep1/96] Length = 404 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + +++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 167 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 227 RNGLLWDTSLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 286 Query: 261 SMGF 264 + GF Sbjct: 287 TWGF 290 >gi|152969235|ref|YP_001334344.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893699|ref|YP_002918433.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella pneumoniae NTUH-K2044] gi|150954084|gb|ABR76114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546015|dbj|BAH62366.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 399 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AEN D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 45 WILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MNN Sbjct: 103 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYV 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 163 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLN 222 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 223 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRESESKKLLT 282 Query: 262 MGF 264 GF Sbjct: 283 WGF 285 >gi|331673546|ref|ZP_08374309.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA280] gi|331068819|gb|EGI40211.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA280] Length = 390 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 GKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 LS G N T Sbjct: 277 LSWGQQNFT 285 >gi|330006051|ref|ZP_08305469.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|328535989|gb|EGF62402.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 423 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AEN D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 69 WILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDA--WA 126 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MNN Sbjct: 127 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYV 186 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 187 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLN 246 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +G+N+VASA +G LI+ ++G R S L Sbjct: 247 RNGLLW--DNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRESESKKL 304 Query: 260 LSMGF 264 L+ GF Sbjct: 305 LTWGF 309 >gi|294627617|ref|ZP_06706199.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597969|gb|EFF42124.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 401 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|304397023|ref|ZP_07378902.1| Beta-lactamase [Pantoea sp. aB] gi|304355172|gb|EFM19540.1| Beta-lactamase [Pantoea sp. aB] Length = 420 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+ E+ D +PASLTK+MT+YVV +K K +T+ ++A + Sbjct: 62 WILIDYASGKVLTESSADQRLDPASLTKMMTSYVVGQAIKAGKIKPDDLVTVGQDA--WA 119 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND +A+A+ + ++ F+ MNN Sbjct: 120 TGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDACIALADYVAGSQDSFIGLMNNYV 179 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THFM HG+ G Y+TARDMA+++ + D P+ + K + N Sbjct: 180 KALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIRDVPEEYALNKEKEFTFNNIRQIN 239 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA +GD LI+V+LG R + S L Sbjct: 240 RNRLLWS--TNLKVDGVKTGHTSGAGNNLVASATEGDMRLISVVLGTASDAIRFRESEKL 297 Query: 260 LSMGF 264 L+ GF Sbjct: 298 LTWGF 302 >gi|294666894|ref|ZP_06732125.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603342|gb|EFF46762.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 401 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRAPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDNSEEQRATDSLALLNWGF 290 >gi|330820568|ref|YP_004349430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli BSR3] gi|327372563|gb|AEA63918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli BSR3] Length = 306 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 13/250 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G V+ E+ D PASLTKLMTAYVV L+ + L T+ + ++ Sbjct: 46 WLVVDGESGRVLGEHDADAERQPASLTKLMTAYVVLDALR--RGALRLDETLRVDGADLA 103 Query: 91 PSNSTFKK-----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + G ++T+++ + LIV SAND A+ +A + + F Q MN+T++ L Sbjct: 104 DLGQDEARMYLVAGRSVTVEDLVDGLIVASANDAAMVLARRVGGSRAGFEQRMNDTARRL 163 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ TH+ G+ G+++TARD+A L+ R+ DFP Y Y + G N NW Sbjct: 164 GMTHTHYTTPSGITTPGNHSTARDLATLARRLTADFPVYYRYSARQQFAYGGFHKRNKNW 223 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDRNTRNKVSASL 259 +G+ G DG+KTG T A+G+ IVA+A + + + AV+LGA + R L Sbjct: 224 LLGSAPGVDGLKTGHTQAAGYCIVATARRRQAAPPMARRVFAVVLGAPSASARIDAGRRL 283 Query: 260 LSMGFYNKTD 269 L + D Sbjct: 284 LDEAYAQSRD 293 >gi|325123015|gb|ADY82538.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 440 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 152/301 (50%), Gaps = 27/301 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 15 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 69 Query: 64 VVFSF-----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + LK+++ + TP+ + ++ S K G +++D L LIV SAND Sbjct: 70 IALKEIKAGKLKKEEIITATPVV---SVVQWDESQMYLKAGEQISVDQLLAGLIVMSAND 126 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV +AE + +FVQ MN ++ LG+ THF N G+ H+TTA D+++LS + Sbjct: 127 AAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLLSQALI 186 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--- 235 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 187 KQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFS 246 Query: 236 ----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 + L+ ++LG R +++ L+++ + D I +Q L E+P Sbjct: 247 SDLTQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVIIP-------EQKLIAELPV 299 Query: 292 I 292 + Sbjct: 300 V 300 >gi|163803893|ref|ZP_02197734.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] gi|159172307|gb|EDP57194.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] Length = 392 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 128/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA L + D P + K G N N Sbjct: 163 KNTHFANVHGLDNPNLYSTPYDMAQLGKALIRDVPDEYRIYSDKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|331089686|ref|ZP_08338584.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium 3_1_46FAA] gi|330404521|gb|EGG84064.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium 3_1_46FAA] Length = 434 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 147/275 (53%), Gaps = 16/275 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+ A+ Sbjct: 78 PSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAAS 137 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K LG+ Sbjct: 138 MGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGMH 197 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------IKGKK--- 199 T+F+N +G+ GH TTARD+A++S + T +PQ +H + + +E KG Sbjct: 198 NTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQ-IHEYAMTWMENITHETKKGTSEFG 256 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + A G+KTG T + F + A+ + D LIAV++ A R + + Sbjct: 257 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 316 Query: 260 LSMGF-----YNKTDRKKINY-IIKDFYQQNLSNE 288 ++ GF Y+ K Y ++K+ ++N+ E Sbjct: 317 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVE 351 >gi|325929151|ref|ZP_08190294.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118] gi|325540470|gb|EGD12069.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118] Length = 401 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDSAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|310766969|gb|ADP11919.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia sp. Ejp617] Length = 411 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 56 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDA--WA 113 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + +++ FV MNN Sbjct: 114 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYV 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 174 KALGLQNTHFQTVHGLDADGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 233 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 234 RNGLLWDTSLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 293 Query: 261 SMGF 264 + GF Sbjct: 294 TWGF 297 >gi|188492414|ref|ZP_02999684.1| penicillin binding protein 6B [Escherichia coli 53638] gi|188487613|gb|EDU62716.1| penicillin binding protein 6B [Escherichia coli 53638] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|308186205|ref|YP_003930336.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1] gi|308056715|gb|ADO08887.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1] Length = 400 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+ E+ D +PASLTK+MT+YVV +K K +T+ ++A + Sbjct: 42 WILIDYASGKVLTESSADQRLDPASLTKMMTSYVVGQAIKAGKIKPDDLVTVGQDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND +A+A+ + ++ F+ MNN Sbjct: 100 TGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDACIALADYVAGSQDSFIGLMNNYV 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THFM HG+ G Y+TARDMA+++ + D P+ + K + N Sbjct: 160 KALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIRDVPEEYALNKEKEFTFNKIRQIN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA +GD LI+V+LG R + S L Sbjct: 220 RNRLLWS--TNLKVDGVKTGHTSGAGNNLVASATEGDMRLISVVLGTASDAIRFRESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|262041277|ref|ZP_06014488.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041393|gb|EEW42453.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 423 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AEN D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 69 WILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDA--WA 126 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MNN Sbjct: 127 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYV 186 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 187 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLN 246 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +G+N+VASA +G LI+ ++G R S L Sbjct: 247 RNGLLW--DNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRESESKKL 304 Query: 260 LSMGF 264 L+ GF Sbjct: 305 LTWGF 309 >gi|153009406|ref|YP_001370621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561294|gb|ABS14792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 398 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 5/243 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ + P PASL KLMTA VVF L++ L TP T+S+NA Sbjct: 40 KAPQVLLVDDRSGTVLLSKNANVPIPPASLVKLMTAEVVFEALEQGATTLGTPYTVSENA 99 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN+ Sbjct: 100 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQAFADRMNDR 159 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGL + F+N+ G+ G + +D+ L+ I+T P+Y Y+ Sbjct: 160 AKELGLIGSKFVNSTGLPAEGQVVSLQDLVRLARHIRTAHPEYYKYYAQPAFTWNNIMQR 219 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASGF +V SA Q + L + G R + + LL Sbjct: 220 NRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRLYLAMSGLASIKEREEEAKRLLQ 279 Query: 262 MGF 264 G Sbjct: 280 WGM 282 >gi|153814787|ref|ZP_01967455.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756] gi|317500310|ref|ZP_07958535.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847818|gb|EDK24736.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756] gi|316898251|gb|EFV20297.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] Length = 415 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 147/275 (53%), Gaps = 16/275 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+ A+ Sbjct: 59 PSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAAS 118 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K LG+ Sbjct: 119 MGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGMH 178 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------IKGKK--- 199 T+F+N +G+ GH TTARD+A++S + T +PQ +H + + +E KG Sbjct: 179 NTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQ-IHEYAMTWMENITHETKKGTSEFG 237 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + A G+KTG T + F + A+ + D LIAV++ A R + + Sbjct: 238 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 297 Query: 260 LSMGF-----YNKTDRKKINY-IIKDFYQQNLSNE 288 ++ GF Y+ K Y ++K+ ++N+ E Sbjct: 298 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVE 332 >gi|303327144|ref|ZP_07357586.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. 3_1_syn3] gi|302863132|gb|EFL86064.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. 3_1_syn3] Length = 256 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 129/245 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG V+ E D PASLTKLM+ ++ +K + L + +S+ A+ S Sbjct: 8 LVNLNTGRVLYEQSADTAIPPASLTKLMSMFLTLDAVKAGRISLNRKVKVSRQAAATGGS 67 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G + L L + V S ND A+ +A+ + + FV+ MN ++ LG+ T F Sbjct: 68 SMHLRAGERVPLVRLLTGMAVASGNDAAMTVAQHVHGNSRTFVRQMNRKARALGMRRTLF 127 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ G TTARDM LS P M + + +G+ NTN +G+ G Sbjct: 128 KNPTGLPAAGQKTTARDMMTLSRAYLKAHPDAMRFHGTRFFLHRGRTMRNTNALLGSVAG 187 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +G+KTG+T ASG+NIV +A +G L+AV+LG ++ R+ + L+ GF + + K+ Sbjct: 188 VNGLKTGWTVASGYNIVITAQRGKTRLLAVVLGGNSKDRRDISARRLIEAGFRHPSSPKQ 247 Query: 273 INYII 277 + + Sbjct: 248 VQRAL 252 >gi|260868661|ref|YP_003235063.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|257765017|dbj|BAI36512.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 29/299 (9%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKIN 274 +GFN++ASAI G + LIAV++GA R + + LL G N T RKK+ Sbjct: 237 SGAGFNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVG 295 >gi|21241435|ref|NP_641017.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str. 306] gi|21106773|gb|AAM35553.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str. 306] Length = 401 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|78046281|ref|YP_362456.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289667540|ref|ZP_06488615.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. musacearum NCPPB4381] gi|78034711|emb|CAJ22356.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 401 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|209694545|ref|YP_002262473.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) [Aliivibrio salmonicida LFI1238] gi|208008496|emb|CAQ78667.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) [Aliivibrio salmonicida LFI1238] Length = 391 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + NPASLTK+MT+YV+ + + + ISKNA Sbjct: 41 YVLMDYHSGKVLAEKDMNVRMNPASLTKMMTSYVIGQEIASGNISMDDDVVISKNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + + + + +IV+S ND VA+AE + +E FV MN SK L L Sbjct: 101 FPGSSKMFIEVGSVVKVRDLNQGIIVQSGNDACVAMAEHVAGSEDAFVDLMNAWSKTLNL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ + Y+T DMA++ + D P+ + K G N N Sbjct: 161 QNTHFANVHGLDRDDLYSTPYDMALIGQALIRDVPEEYRVYSEKSYTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+N+V+SA +G L+AV++G N R S LL+ GF Sbjct: 221 W--DKSMNVDGIKTGHTDGAGYNLVSSATEGKMRLVAVVMGTKSGNARKAESKKLLNYGF 278 >gi|170019661|ref|YP_001724615.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ATCC 8739] gi|169754589|gb|ACA77288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--NTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|256022304|ref|ZP_05436169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia sp. 4_1_40B] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 29/299 (9%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAESWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKIN 274 +GFN++ASA+ G + LIAV++GA R + + LL G N T RKK+ Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVG 295 >gi|317496786|ref|ZP_07955116.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895798|gb|EFV17950.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 399 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 14/258 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ + ++ D PAS+TK+M+ ++F LK+ K LT +T+S++A+ S Sbjct: 46 VMEQESKEILFAKDKDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +K +++ SAND VA+AE +C +E+ FV MN ++ LG+ T F Sbjct: 106 QVFLETGEKQQVQTLIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNTN 204 NA G+ GH T+A D+A+++ + +P+ Y +I I KG+K NTN Sbjct: 166 QNACGLDTKGHVTSAYDIALMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTN 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G GMKTG T +GF + A+A + +IAV++G R K + +LL GF Sbjct: 226 KLIRQYHGCTGMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGF 285 Query: 265 YN------KTDRKKINYI 276 N +T RK+I I Sbjct: 286 SNCQRIHSETTRKEIGRI 303 >gi|167766358|ref|ZP_02438411.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1] gi|167711949|gb|EDS22528.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1] Length = 399 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 14/258 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ + ++ D PAS+TK+M+ ++F LK+ K LT +T+S++A+ S Sbjct: 46 VMEQESKEILFAKDKDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +K +++ SAND VA+AE +C +E+ FV MN ++ LG+ T F Sbjct: 106 QVFLETGEKQQVQTLIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNTN 204 NA G+ GH T+A D+A+++ + +P+ Y +I I KG+K NTN Sbjct: 166 QNACGLDAKGHVTSAYDIALMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTN 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G GMKTG T +GF + A+A + +IAV++G R K + +LL GF Sbjct: 226 KLIRQYHGCTGMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGF 285 Query: 265 YN------KTDRKKINYI 276 N +T RK+I I Sbjct: 286 SNCQRIHSETTRKEIGRI 303 >gi|332160854|ref|YP_004297431.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604756|emb|CBY26254.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665084|gb|ADZ41728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863383|emb|CBX73505.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia enterocolitica W22703] Length = 403 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|110642224|ref|YP_669954.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 536] gi|191170002|ref|ZP_03031556.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|227887061|ref|ZP_04004866.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972] gi|110343816|gb|ABG70053.1| penicillin-binding protein 6B precursor [Escherichia coli 536] gi|190909518|gb|EDV69103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|227835411|gb|EEJ45877.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972] gi|307554080|gb|ADN46855.1| DD-carboxypeptidase [Escherichia coli ABU 83972] gi|323956179|gb|EGB51930.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|89108830|ref|AP_002610.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|162135904|ref|NP_416514.4| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. MG1655] gi|170081640|ref|YP_001730960.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. DH10B] gi|238901200|ref|YP_002926996.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BW2952] gi|3183515|sp|P33013|DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags: Precursor gi|85675189|dbj|BAA15838.2| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|87082022|gb|AAC75071.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. MG1655] gi|169889475|gb|ACB03182.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. DH10B] gi|238860731|gb|ACR62729.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BW2952] gi|260448889|gb|ACX39311.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] gi|315136643|dbj|BAJ43802.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli DH1] gi|332343793|gb|AEE57127.1| D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli UMNK88] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|193062785|ref|ZP_03043878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|331683696|ref|ZP_08384292.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H299] gi|192931428|gb|EDV84029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|331078648|gb|EGI49850.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H299] Length = 388 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G LIAVI+GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283 >gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] Length = 393 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YV+ L+ L + +SKNA Sbjct: 44 FVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLEDDVVVSKNAWAKN 103 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF N HG+ Y+T DMA+L + D P + + G N N Sbjct: 164 TNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIYSEQKFTYNGITQYNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G LIAV++G D N R S LLS GF Sbjct: 224 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGF 281 >gi|238755056|ref|ZP_04616404.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] gi|238706760|gb|EEP99129.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] Length = 403 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 126/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKSGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFQGSSLMFLKPGDQVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 NALGLKNTHFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA +G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] Length = 393 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YV+ L+ L + +SKNA Sbjct: 44 FVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERGNISLEDDVVVSKNAWAKN 103 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF N HG+ Y+T DMA+L + D P + + G N N Sbjct: 164 TNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIYSEQKFTYNGITQYNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G LIAV++G D N R S LLS GF Sbjct: 224 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGF 281 >gi|309702334|emb|CBJ01656.1| penicillin-binding protein 6B [Escherichia coli ETEC H10407] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|257453878|ref|ZP_05619156.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus SK60] gi|257448805|gb|EEV23770.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus SK60] Length = 395 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV-----FSFLKEKKAMLTTPITISKN 85 + L+D +TG V+A+ P+ PASLTK+MT+Y++ LKE + +L TP K Sbjct: 47 FILIDYDTGTVLAQKNAAQPFPPASLTKMMTSYIIEQRLLSGALKENEPILMTPEAWCKG 106 Query: 86 ASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 +SE Y P N+T + + LK +I++S ND + A+A+ + +E F MN Sbjct: 107 SSEESCMYVPVNTT------APVIDMLKGIIIQSGNDASKAMAQHIGGSETTFADLMNEE 160 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K +G++ THFMNA G+ Q GH +A D+A L+ I + +Y + K G Sbjct: 161 AKKIGMTHTHFMNATGMPQEGHQASAEDLAKLAQAIIKNSKKYYPIYSQKQFTYNGITQG 220 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + T DG+KTG T +G+ +VAS+ +GD LI+VI+G R S +LL+ Sbjct: 221 NRNALLFTDPTVDGLKTGHTDEAGYCLVASSKRGDMRLISVIMGTKSAQERADQSRNLLN 280 Query: 262 MGFYN 266 GF N Sbjct: 281 WGFSN 285 >gi|168790220|ref|ZP_02815227.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|195939526|ref|ZP_03084908.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC4024] gi|254793720|ref|YP_003078557.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. TW14359] gi|261226456|ref|ZP_05940737.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|189370276|gb|EDU88692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|226237417|dbj|BAH46939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O55:H7] gi|254593120|gb|ACT72481.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O157:H7 str. TW14359] gi|320188186|gb|EFW62850.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320641418|gb|EFX10862.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. G5101] gi|320646787|gb|EFX15664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str. 493-89] gi|320652066|gb|EFX20409.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str. H 2687] gi|320657428|gb|EFX25226.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663244|gb|EFX30549.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str. USDA 5905] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|254225957|ref|ZP_04919558.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|125621491|gb|EAZ49824.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] Length = 389 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + LP Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVLPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|123443220|ref|YP_001007194.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090181|emb|CAL13044.1| putative penicillin-binding protein 5 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 403 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|157155424|ref|YP_001463361.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E24377A] gi|157077454|gb|ABV17162.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|323961778|gb|EGB57379.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|292898840|ref|YP_003538209.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946] gi|291198688|emb|CBJ45797.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946] Length = 404 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 167 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 227 RNGLLWDTNLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 286 Query: 261 SMGF 264 + GF Sbjct: 287 TWGF 290 >gi|323968145|gb|EGB63554.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVGRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|28897493|ref|NP_797098.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260876429|ref|ZP_05888784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|28805705|dbj|BAC58982.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308091621|gb|EFO41316.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|328472498|gb|EGF43361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 392 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KNSHFANVHGLDNSELYSTPYDMALLGKALIRDVPDEYRVYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G D N R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGTKDANARKSESKKLLSYGF 280 >gi|292487601|ref|YP_003530473.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora CFBP1430] gi|291553020|emb|CBA20065.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora CFBP1430] Length = 411 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 56 YILIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDA--WA 113 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 114 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYV 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 174 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 233 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 234 RNGLLWDTNLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 293 Query: 261 SMGF 264 + GF Sbjct: 294 TWGF 297 >gi|238758038|ref|ZP_04619219.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] gi|238703792|gb|EEP96328.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] Length = 403 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|220904314|ref|YP_002479626.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868613|gb|ACL48948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 258 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ D PASLTK+MT Y+ ++ K I I+ + S Sbjct: 8 LINMDTGKILYAKNADMAIPPASLTKVMTMYLAMDQIRAGKIKPGEKIRITPQVAAVGGS 67 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G + L L + V S ND A A+A + +++FV+ MN +K LG++ T F Sbjct: 68 SMHLRAGERVALSQLLTGMAVVSGNDAATAVARRVGGNDRQFVRAMNQKAKALGMNRTTF 127 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ G TTARDMA ++ P + Y ++ L + +K NTN +GT G Sbjct: 128 KNPTGLPAAGQKTTARDMARMTRAYLRSHPSALRYHSVQLLTYRDRKTRNTNGLLGTVAG 187 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +G+KTG+T ASG+N++ + +G ++AV++G R R+ + L+ GF + KK Sbjct: 188 VNGLKTGWTVASGYNLIVTGQRGKTRMLAVVMGGTSRVGRDNAARRLIEAGFRHPASPKK 247 Query: 273 INYI 276 + + Sbjct: 248 VQQM 251 >gi|191167708|ref|ZP_03029516.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190902221|gb|EDV61962.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|323948386|gb|EGB44371.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|260844620|ref|YP_003222398.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|257759767|dbj|BAI31264.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFTAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G LIAVI+GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283 >gi|188534483|ref|YP_001908280.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia tasmaniensis Et1/99] gi|188029525|emb|CAO97402.1| Penicillin-binding protein 5 [Erwinia tasmaniensis Et1/99] Length = 404 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDIVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 167 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 227 RNGLLWDTSLNVDGIKTGHTESAGYNLVASATEGQQMRLISAVMGGHTYKGRETESKKLL 286 Query: 261 SMGF 264 + GF Sbjct: 287 TWGF 290 >gi|256017815|ref|ZP_05431680.1| D-alanyl-D-alanine carboxypeptidase [Shigella sp. D9] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|238791637|ref|ZP_04635275.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] gi|238729253|gb|EEQ20769.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] Length = 403 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|238762884|ref|ZP_04623852.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] gi|238698895|gb|EEP91644.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] Length = 403 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 49 YVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLWD--TSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|152996856|ref|YP_001341691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1] gi|150837780|gb|ABR71756.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1] Length = 382 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 11/273 (4%) Query: 10 MAMLSNIFPFLS---IAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +A LS +F F+S A + +P Y L+D TG ++ E+ D PASLTK Sbjct: 5 LATLSLVFCFVSGSVFAAPSLIPTPPQLSASSYILMDAYTGDILVEHNADQALPPASLTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY++ L L + IS+ A S ++G+ + L++ ++ +I++S ND Sbjct: 65 LMTAYIIEYELARGNLSLDDKVNISEKAWRMEGSRMFIREGTQVKLEDLMRGIIIQSGND 124 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA AE + +E F MN ++ LG++ +HF+NA G HY++A D+A L+ Sbjct: 125 ASVAAAEHIAGSESAFADLMNQHAQLLGMTNSHFVNATGFPAEDHYSSAHDIAKLARATI 184 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FP+ + K + PN N + DGMKTG T A+GF + ASA++ Sbjct: 185 LQFPENYSMYAEKEFTYNNIRQPNRNKLLWRDKTVDGMKTGHTEAAGFCLAASAVRNGTR 244 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 LI V++G R S LL GF RK Sbjct: 245 LITVVMGTKSDTARAIESQKLLDYGFRYYETRK 277 >gi|304397386|ref|ZP_07379264.1| Beta-lactamase [Pantoea sp. aB] gi|304355004|gb|EFM19373.1| Beta-lactamase [Pantoea sp. aB] Length = 387 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 131/267 (49%), Gaps = 26/267 (9%) Query: 19 FLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+A+ + +P+ + L+D TG V+ PD NPASLTKLMT YVV Sbjct: 15 WASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDR 74 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDI 119 + +KK +T+ K+A + N FK S M L KL +I+ S ND Sbjct: 75 AIDQKKISRDDMVTVGKDA--WGAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDA 132 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+A+ + +E FV MN+ + LGL THF HG+ G +++A DMA LS I Sbjct: 133 CVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQFSSALDMAKLSRAIID 192 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 P + + K L G N N W L DG+KTG T +GFNI+AS + G Sbjct: 193 GEPDFYAMYSEKTLTWNGITQNNRNGLLW--DNNLHVDGLKTGHTETAGFNIIASNVVGK 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMG 263 LIAV++G R + + LL G Sbjct: 251 HRLIAVVMGGKSSKGREEQARKLLVWG 277 >gi|194428756|ref|ZP_03061292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|194436027|ref|ZP_03068129.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|215487233|ref|YP_002329664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O127:H6 str. E2348/69] gi|218554572|ref|YP_002387485.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI1] gi|218705552|ref|YP_002413071.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UMN026] gi|293405492|ref|ZP_06649484.1| dacD [Escherichia coli FVEC1412] gi|298381180|ref|ZP_06990779.1| dacD [Escherichia coli FVEC1302] gi|307312424|ref|ZP_07592058.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W] gi|312967243|ref|ZP_07781459.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75] gi|331668710|ref|ZP_08369558.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA271] gi|194413203|gb|EDX29489.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|194424755|gb|EDX40740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|215265305|emb|CAS09700.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O127:H6 str. E2348/69] gi|218361340|emb|CAQ98928.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli IAI1] gi|218432649|emb|CAR13544.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli UMN026] gi|222033782|emb|CAP76523.1| Penicillin-binding protein 6B [Escherichia coli LF82] gi|291427700|gb|EFF00727.1| dacD [Escherichia coli FVEC1412] gi|298278622|gb|EFI20136.1| dacD [Escherichia coli FVEC1302] gi|306907595|gb|EFN38098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W] gi|312288051|gb|EFR15955.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75] gi|312946640|gb|ADR27467.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O83:H1 str. NRG 857C] gi|315061285|gb|ADT75612.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli W] gi|320193299|gb|EFW67937.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|323378135|gb|ADX50403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli KO11] gi|330911850|gb|EGH40360.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331063904|gb|EGI35815.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA271] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|166710542|ref|ZP_02241749.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas oryzae pv. oryzicola BLS256] Length = 401 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 132/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLTAEGHHSTAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|332977441|gb|EGK14217.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 395 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 16/248 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E PAS+TK+MT +V L++ + + S+ AS S Sbjct: 39 LVDADTGTVLYEKNSREKLPPASITKIMTMLLVMEALEKGQISYEDRVRTSEYASSMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M L++ LK + V SAND +VA+AE L TE++FV+ MN ++ LG+ T F Sbjct: 99 QIFLETGEVMKLEDLLKAVAVGSANDASVALAEHLAGTEERFVEMMNRRAEELGMKDTRF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSW-----RIKTDFPQ-YMHYFQIKGLEIKGKKYP----N 202 N +G+ HY+TARD+AI+S R T F + Y Y + K K P N Sbjct: 159 QNPNGLPASDHYSTARDIAIMSRELLKHREITRFTKTYEDYLR------KESKKPFWLVN 212 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G DG+KTGFT +GF + A+A + D IAV++G D RN+ +L Sbjct: 213 TNKLVKFYEGLDGLKTGFTREAGFCLAATAKRRDLRAIAVVMGEPDVKARNREITRMLDF 272 Query: 263 GFYNKTDR 270 F +R Sbjct: 273 AFNQYANR 280 >gi|188591036|ref|YP_001795636.1| d-alanyl-d-alanine carboxypeptidase; penicillin-binding protein 6a [Cupriavidus taiwanensis LMG 19424] gi|170937930|emb|CAP62914.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Cupriavidus taiwanensis LMG 19424] Length = 399 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 15/246 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-----AMLTTPITISKN 85 + L D +G +A D PASLTKLMTAY+ F LKEK+ A++ T + + Sbjct: 46 WMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPTNLVLKVK 105 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + E S + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN ++ + Sbjct: 106 SDE---SRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRM 162 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + PN N Sbjct: 163 GMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYSMYSQKEFTYNKIRQPNRNR 222 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSAS 258 + DG+KTG T ++G+ +++SA + G + LI++++G R + S Sbjct: 223 LLYIDSTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQESLK 282 Query: 259 LLSMGF 264 +L+ GF Sbjct: 283 ILNYGF 288 >gi|294671129|ref|ZP_06735984.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307237|gb|EFE48480.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 430 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 127/230 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +G ++ D PASLTKLMTAY+ F L+E + T +T S+ A Sbjct: 82 YLVQDLQSGQILTGKNLDKQIEPASLTKLMTAYLAFKALEEGRLKAETMLTPSETAWRAE 141 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G + + + LK LIV+S ND AV +AE+L +E F MN +K LG+S T Sbjct: 142 GSRMFLNAGKPVAVGDLLKGLIVQSGNDAAVTLAEALGGSEVGFADMMNAEAKRLGMSKT 201 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+NA G+ GH +T RD+AILS I D+P+Y + ++ + + PN N + Sbjct: 202 HFVNATGLPSDGHMSTVRDLAILSAAIIKDYPKYYPIYSMQSFKYNNIEQPNRNLLLYRD 261 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T +G+N++AS+ + + +++V++G R S+ LL Sbjct: 262 PNVDGLKTGHTNTAGYNLIASSKRNGRRVVSVVVGTESIEARAGESSKLL 311 >gi|294637512|ref|ZP_06715798.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291089344|gb|EFE21905.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 403 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDA--WA 106 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ N ++ + + S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T + DG+KTG T ++G+N+VASA +G+ LI+ ++G R S L Sbjct: 227 RNGLLWD--TSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|220903565|ref|YP_002478877.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867864|gb|ACL48199.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 378 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 125/232 (53%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D + ++ E D PASLTK+++ ++ + + K L +T+S+ A+ S Sbjct: 53 LYDLDHDAILFEQNADQRIAPASLTKVLSMFLALDSVDQGKLSLDNTVTVSRAAAGTGGS 112 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ ++L+ L + V S ND ++A+AE + + FV MN ++ LG+ + F Sbjct: 113 RMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTPAFVAMMNAKAQALGMRDSQF 172 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N HG+ G YTTARDM L+ PQ + + + KG+ N N +G + G Sbjct: 173 RNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHTISHKGRVTWNKNPLLGQYPG 232 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ADG+KTG+ ASG+N++ +A QG + L+AVILGA D TR + LL GF Sbjct: 233 ADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTRGVEAFRLLDAGF 284 >gi|323177151|gb|EFZ62741.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1180] Length = 390 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 21/261 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASAI G + LIAV++GA R + + L Sbjct: 219 RNGLLW--DKTMNVDGLKTGHTSGAGFNLIASAIDGQRRLIAVVMGADSAKGREEEAKKL 276 Query: 260 LSMGFYNKT------DRKKIN 274 L G N T RKK+ Sbjct: 277 LRWGQQNFTTVQILHRRKKVG 297 >gi|303241570|ref|ZP_07328070.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302590888|gb|EFL60636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 403 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 145/287 (50%), Gaps = 25/287 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY----------------------TLLDTNTGHV 41 F +I + +++N+F + AE + P Y L+D TG V Sbjct: 7 FRHLIVICIVANLFSVFAFAEEER-PVYNPNTVNSIMASTSISELKAKASVLMDAYTGQV 65 Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101 + EN + AS+TK+M+ + + K L +T S+ AS S + + G Sbjct: 66 LYENKSNEKLPIASVTKVMSMLLAMEAIDSGKISLKDMVTASEYASGMGGSQAYIEPGEQ 125 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 ++ +ALK + + S+ND+ V++AE + +E+ FV MN + LG+ T F + G+ Sbjct: 126 YSVHDALKAIALHSSNDVTVSVAELVAGSEEAFVVQMNEKAGELGMKNTLFKDCTGLTDE 185 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTG 219 GH+++A D+A++S + T P+ + Y + + ++ NTN V + G DG+KTG Sbjct: 186 GHFSSANDIALMSRELVTKHPKILEYSSVYTDTFRNGEFDLTNTNRLVKFYSGCDGLKTG 245 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 FT A+GF + A+ + + LI+V+LG D NTR + LL GF N Sbjct: 246 FTRAAGFCLSATVSRNNMRLISVVLGEPDSNTRFAETRKLLDYGFAN 292 >gi|307138677|ref|ZP_07498033.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H736] gi|331642633|ref|ZP_08343768.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H736] gi|331039431|gb|EGI11651.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H736] Length = 388 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 29/299 (9%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKIN 274 +GFN++ASA+ G + LIAV++GA R + + LL G N T RKK+ Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVG 295 >gi|253773059|ref|YP_003035890.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161999|ref|YP_003045107.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B str. REL606] gi|297519533|ref|ZP_06937919.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli OP50] gi|242377656|emb|CAQ32416.1| DD-carboxypeptidase, penicillin-binding protein 6b [Escherichia coli BL21(DE3)] gi|253324103|gb|ACT28705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973900|gb|ACT39571.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli B str. REL606] gi|253978094|gb|ACT43764.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BL21(DE3)] Length = 388 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 29/299 (9%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKIN 274 +GFN++ASA+ G + LIAV++GA R + + LL G N T RKK+ Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVG 295 >gi|161613330|ref|YP_001587295.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362694|gb|ABX66462.1| hypothetical protein SPAB_01041 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 388 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 158/342 (46%), Gaps = 43/342 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWN 52 M++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 1 MKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHI--DGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-----------KTDR 270 +GFN++ASA+ G + LIAV++GA R + + LL G N K Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGS 296 Query: 271 KKINYIIK---------DFYQQNLSNEVPNISEEVCTTQKEI 303 ++I Y K DF+ E+P+I + +KE+ Sbjct: 297 ERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 338 >gi|312973749|ref|ZP_07787921.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70] gi|310332344|gb|EFP99579.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70] Length = 390 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L+ THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLNDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|167037532|ref|YP_001665110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115947|ref|YP_004186106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856366|gb|ABY94774.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929038|gb|ADV79723.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 381 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 38 LMEANTGQILYEKDSHKPLPPASVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEVGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ + GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPEEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A +GD LIAV+ GA D TR +A LL GF N Sbjct: 217 KGVDGIKTGSTSEALYCMAATAKRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFAN 272 >gi|327253142|gb|EGE64796.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli STEC_7v] Length = 388 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|323936908|gb|EGB33191.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] Length = 388 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKNLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|315180861|gb|ADT87775.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218] Length = 391 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE +PASLTK+MT+YV+ LK +TIS+NA Sbjct: 42 FVLIDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELKRGNITNDDDVTISRNAWAKN 101 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +IV+S ND VA+AE + +E FV MN + LG+ Sbjct: 102 FPDSSKMFIEVGTTVKVRDLNQGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWA 206 THF N HG+ Y+T DMA+L + D P +Y Y Q K +Y Sbjct: 162 QETHFANVHGLDDPNLYSTPYDMALLGQALIRDVPDEYKIYSQQKFTYNGITQYNRNGLL 221 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+++V+SA +G LIAV++G D N R S LLS GF Sbjct: 222 WDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGF 279 >gi|153953878|ref|YP_001394643.1| DacA2 [Clostridium kluyveri DSM 555] gi|219854493|ref|YP_002471615.1| hypothetical protein CKR_1150 [Clostridium kluyveri NBRC 12016] gi|146346759|gb|EDK33295.1| DacA2 [Clostridium kluyveri DSM 555] gi|219568217|dbj|BAH06201.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 403 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G +I E + PAS+TK+M + L K L+ +T+S+NA + S Sbjct: 57 LMEPTSGKIIFEKNANEKLEPASVTKIMDMLLTMEALDSGKISLSDKVTVSENAKKMGGS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++++ +K + + S ND AVA+AE L TE+ FVQ MN +K LG++ T F Sbjct: 117 SMLLDTGEVRSVEDLIKGIGIASGNDAAVAMAEYLGGTEEAFVQLMNKRAKELGMNNTQF 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ Q GHYTTA D+A++S + P + Y I +G+K P N N V Sbjct: 177 KNCTGLSQEGHYTTAYDIALMSSEL-LKHPNILKYTGTYMETISEGRKSPIELVNHNKLV 235 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT ++ + I A++++ ++AV++G+ RNK ++ L++ GF Sbjct: 236 RFFKGCDGLKTGFTDSAKYCISATSVRDGARMLAVVMGSPTYKERNKEASMLMNYGF 292 >gi|332278836|ref|ZP_08391249.1| penicillin-binding protein 6B [Shigella sp. D9] gi|332101188|gb|EGJ04534.1| penicillin-binding protein 6B [Shigella sp. D9] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|26248385|ref|NP_754425.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli CFT073] gi|237704469|ref|ZP_04534950.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA] gi|26108789|gb|AAN80992.1|AE016762_245 Penicillin-binding protein 6B precursor [Escherichia coli CFT073] gi|226900835|gb|EEH87094.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|15832066|ref|NP_310839.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. Sakai] gi|168764096|ref|ZP_02789103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|168777102|ref|ZP_02802109.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|168784009|ref|ZP_02809016.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|188025184|ref|ZP_02997384.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189402596|ref|ZP_03006773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189403423|ref|ZP_03007084.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189406210|ref|ZP_03008107.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|208810754|ref|ZP_03252630.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208816718|ref|ZP_03257838.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208818499|ref|ZP_03258819.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209397891|ref|YP_002271183.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209447203|ref|YP_002274288.1| penicillin-binding protein 6b [Stx2-converting phage 1717] gi|217329693|ref|ZP_03445772.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|261256444|ref|ZP_05948977.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. FRIK966] gi|291283247|ref|YP_003500065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7 str. CB9615] gi|293410371|ref|ZP_06653947.1| dacD [Escherichia coli B354] gi|13362280|dbj|BAB36235.1| penicillin binding protein 6b [Escherichia coli O157:H7 str. Sakai] gi|187767572|gb|EDU31416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188014404|gb|EDU52526.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|188998746|gb|EDU67732.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189354737|gb|EDU73156.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189360801|gb|EDU79220.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189365830|gb|EDU84246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189375987|gb|EDU94403.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|208725270|gb|EDZ74977.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208731061|gb|EDZ79750.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208738622|gb|EDZ86304.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209159291|gb|ACI36724.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209361182|gb|ACI43175.1| penicillin-binding protein 6b [Escherichia coli O157:H7] gi|209748254|gb|ACI72434.1| penicillin binding protein 6b [Escherichia coli] gi|209748256|gb|ACI72435.1| penicillin binding protein 6b [Escherichia coli] gi|209748258|gb|ACI72436.1| penicillin binding protein 6b [Escherichia coli] gi|217317461|gb|EEC25890.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|284922011|emb|CBG35089.1| penicillin-binding protein 6B [Escherichia coli 042] gi|290763120|gb|ADD57081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7 str. CB9615] gi|291470839|gb|EFF13323.1| dacD [Escherichia coli B354] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|327394408|dbj|BAK11830.1| penicillin-binding protein 6B precursor DacD [Pantoea ananatis AJ13355] Length = 364 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 125/244 (51%), Gaps = 15/244 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ PD NPASLTKLMT YVV + +KK +T+ K+A + Sbjct: 15 WVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVTVGKDA--WA 72 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L KL +I+ S ND VA+A+ + ++ FV+ MN+ Sbjct: 73 AGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGSQDNFVKLMNHYV 132 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL+ THF HG+ G +++A DMA LS I P + ++ K L G N Sbjct: 133 EKLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYREKTLTWNGITQNN 192 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +GFNI+AS + G LIAV++G R + + L Sbjct: 193 RNGLLW--DNSLHVDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSAKGREEQARKL 250 Query: 260 LSMG 263 L G Sbjct: 251 LVWG 254 >gi|293415304|ref|ZP_06657947.1| dacD [Escherichia coli B185] gi|291432952|gb|EFF05931.1| dacD [Escherichia coli B185] gi|323168855|gb|EFZ54535.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella sonnei 53G] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|90578192|ref|ZP_01234003.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90441278|gb|EAS66458.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 459 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 127/236 (53%), Gaps = 2/236 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D NTG +IA N + PAS TKLM Y+V L + L + + + + A Sbjct: 106 FILIDANTGQIIASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLVPEVAWRTG 165 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T+ LG+ T Sbjct: 166 GSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNT 225 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF G+ H++TA D+ +L I D+PQY H+F K E + PN N + T+ Sbjct: 226 HFTTVMGLPAPAHFSTAYDLGLLGEHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTY 285 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGALDRNTRNKVSASLLSMGF 264 A GMKTG T A+G+++V+SA D +L+AV+LG N S L + GF Sbjct: 286 QYATGMKTGSTEAAGYSLVSSAKMPDNPMNLVAVVLGTQSLNDVAAQSKGLFNYGF 341 >gi|257465150|ref|ZP_05629521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor 202] gi|257450810|gb|EEV24853.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor 202] Length = 392 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D N+G V+A PD PASLTK+MTAYVV +K+ K + +T+++N A + Sbjct: 40 YILMDYNSGAVLASLNPDQRQYPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQK 99 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + +K LI+ S ND AVA+AE +++ F+ MN ++ GL Sbjct: 100 FPGSSLMFLDLNTQVSVGDLMKGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGL 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-- 204 T+F HG+ +++A DMAI+ + D P+ + K + KK PN N Sbjct: 160 KNTYFTTVHGLDDPNQFSSAHDMAIIGAHVIRDQPEEYKIYAEKEFKYNIKKPQPNRNGL 219 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 220 LW--DKTMNVDGMKTGHTDKAGYNLVASATNANTRLISVVMGVPTYKGREVESKKLLQWG 277 Query: 264 FYN 266 F N Sbjct: 278 FAN 280 >gi|331677915|ref|ZP_08378590.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H591] gi|331074375|gb|EGI45695.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H591] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|293446369|ref|ZP_06662791.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088] gi|291323199|gb|EFE62627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088] gi|324119040|gb|EGC12929.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|312171708|emb|CBX79966.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora ATCC BAA-2158] Length = 411 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 56 YILIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDA--WA 113 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 114 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYV 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G Y++ARDMA++ + D P + K + N Sbjct: 174 KALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMN 233 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260 N + T L DG+KTG T ++G+N+VASA +G Q LI+ ++G R S LL Sbjct: 234 RNGLLWDTNLNVDGIKTGHTESAGYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLL 293 Query: 261 SMGF 264 + GF Sbjct: 294 TWGF 297 >gi|71898423|ref|ZP_00680595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] gi|71731736|gb|EAO33795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] Length = 347 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 137/237 (57%), Gaps = 7/237 (2%) Query: 34 LDTNTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-----S 87 +D +G V+A EN H PASLTK+MT+YV+ + +K K + +++NA + Sbjct: 1 MDYASGQVLAGENIHTHL-APASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGA 59 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ +G+ Sbjct: 60 GTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGM 119 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N + Sbjct: 120 KNSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLL 179 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 180 WRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGF 236 >gi|91781628|ref|YP_556834.1| penicillin-binding protein 6 [Burkholderia xenovorans LB400] gi|91685582|gb|ABE28782.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia xenovorans LB400] Length = 418 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L+ KK + + S+ Sbjct: 64 WVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVR 123 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 124 TDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGMK 183 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+AILS R+ DFP Y + F +K K PN N + Sbjct: 184 HTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLW 243 Query: 209 TFLGADGMKTGFTCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + L++V++G + R + S +L+ Sbjct: 244 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLN 303 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ K N ++ Sbjct: 304 YGYSAYDTVRLYKANQVV 321 >gi|218699400|ref|YP_002407029.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI39] gi|218369386|emb|CAR17143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli IAI39] Length = 388 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 39 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 96 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 97 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 156 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 157 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 216 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 217 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 274 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 275 LRWGQQNFT 283 >gi|170683658|ref|YP_001743130.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SMS-3-5] gi|331647659|ref|ZP_08348751.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M605] gi|331663510|ref|ZP_08364420.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA143] gi|170521376|gb|ACB19554.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|281179111|dbj|BAI55441.1| penicillin binding protein 6 [Escherichia coli SE15] gi|323161927|gb|EFZ47801.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli E128010] gi|323187689|gb|EFZ72990.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli RN587/1] gi|331043383|gb|EGI15521.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M605] gi|331059309|gb|EGI31286.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA143] Length = 390 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|218676325|ref|YP_002395144.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus LGP32] gi|218324593|emb|CAV26124.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus LGP32] Length = 394 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E NPASLTKLMT+YV +K + IS+NA Sbjct: 45 YVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKN 104 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T + + + + LI++S ND +VAIAE + ++ FV MN+ + +L L Sbjct: 105 FPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKL 164 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF NAHG+ Y+T D+A+L I D P + + N N + Sbjct: 165 ENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLL 224 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ +SA QG+ LIAV++GA +R S LLS GF Sbjct: 225 RDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 282 >gi|209919474|ref|YP_002293558.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11] gi|209912733|dbj|BAG77807.1| penicillin binding protein 6 [Escherichia coli SE11] Length = 390 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|86144247|ref|ZP_01062579.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] gi|85837146|gb|EAQ55258.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] Length = 381 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ E NPASLTKLMT+YV +K + IS+NA Sbjct: 32 YVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKN 91 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T + + + + LI++S ND +VAIAE + ++ FV MN+ + +L L Sbjct: 92 FPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKL 151 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF NAHG+ Y+T D+A+L I D P + + N N + Sbjct: 152 ENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLL 211 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+++ +SA QG+ LIAV++GA +R S LLS GF Sbjct: 212 RDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 269 >gi|168238798|ref|ZP_02663856.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734763|ref|YP_002115095.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710265|gb|ACF89486.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288431|gb|EDY27812.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 390 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGLQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|157369441|ref|YP_001477430.1| D-alanyl-D-alanine carboxypeptidase fraction A [Serratia proteamaculans 568] gi|157321205|gb|ABV40302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 428 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K +T+ ++A + Sbjct: 74 YVLIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGKIGQEDMVTVGQDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MN Sbjct: 132 TGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYV 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 192 SKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 251 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA +G LI+ +LG R S L Sbjct: 252 RNGLLW--DTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKL 309 Query: 260 LSMGF 264 L+ GF Sbjct: 310 LTWGF 314 >gi|308186017|ref|YP_003930148.1| D-alanine carboxypeptidase [Pantoea vagans C9-1] gi|308056527|gb|ADO08699.1| D-alanine carboxypeptidase [Pantoea vagans C9-1] Length = 420 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 129/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ +A + Sbjct: 66 YVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVTVGPDA--WA 123 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ ++++S ND VA+A+ + ++ FV MNN Sbjct: 124 TGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYV 183 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K +GL THF HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 184 KAIGLQNTHFGTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMN 243 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S LL+ Sbjct: 244 RNGLLWDTNLNVDGIKTGHTNSAGYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLT 303 Query: 262 MGF 264 GF Sbjct: 304 WGF 306 >gi|325920074|ref|ZP_08182046.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865] gi|325549444|gb|EGD20326.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865] Length = 401 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRNL 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDSSERQRADDSLALLNWGF 290 >gi|271499698|ref|YP_003332723.1| beta-lactamase [Dickeya dadantii Ech586] gi|270343253|gb|ACZ76018.1| Beta-lactamase [Dickeya dadantii Ech586] Length = 403 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +TI K+A + Sbjct: 49 YILIDYNSGKVLAEKNADARRNPASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPDFQGSSLMFLKPGDRVPVYLLNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQLN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTG T ++G+N+VASA +G LI+ ++G R S L Sbjct: 227 RNGLLW--DSSLAVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|15802489|ref|NP_288515.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 EDL933] gi|12516188|gb|AAG57069.1|AE005426_11 penicillin binding protein 6b [Escherichia coli O157:H7 str. EDL933] Length = 390 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|330445206|ref|ZP_08308858.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489397|dbj|GAA03355.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 391 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++A + PASLTK+MT+YV+ +K + +SKNA Sbjct: 41 YILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVIGQEIKNGNISPDDTVVVSKNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G T+ + + + +IV S ND VA+AE + +++ FV MN +KNLG+ Sbjct: 101 FPGSSKMFLEVGKTVKVSDLNRGIIVDSGNDACVAMAEHIAGSQESFVDLMNGWAKNLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +THF N HG+ + YTT D++IL+ + +D P + K G N N Sbjct: 161 KSTHFANVHGLDRSDLYTTPYDLSILARHLISDLPNEFKIYSEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V++A +G+ L+AV++G +N R S LL+ GF Sbjct: 221 W--DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLVAVVMGTASKNARLAESKKLLNFGF 278 >gi|296160368|ref|ZP_06843185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1] gi|295889349|gb|EFG69150.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1] Length = 410 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L+ KK + + S+ Sbjct: 56 WVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVR 115 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 116 TDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGMK 175 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+AILS R+ DFP Y + F +K K PN N + Sbjct: 176 HTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLW 235 Query: 209 TFLGADGMKTGFTCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + L++V++G + R + S +L+ Sbjct: 236 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLN 295 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ K N ++ Sbjct: 296 YGYSAYDTVRLYKANQVV 313 >gi|312882711|ref|ZP_07742448.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369672|gb|EFP97187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC BAA-2122] Length = 392 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE +PASLTK+MT+YV+ L L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELARGNISLQDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+++ ++ + +I++S ND VA+AE + +E FV MN + +G+ Sbjct: 103 FPESSKMFIEVGTSVKVEELNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGM 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 163 KDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRIYSEKKFTYNGITQYNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N+R S LLS GF Sbjct: 223 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANSRKSESKKLLSYGF 280 >gi|218690072|ref|YP_002398284.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ED1a] gi|218427636|emb|CAR08547.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli ED1a] Length = 388 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNIDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|323977820|gb|EGB72906.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] Length = 388 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREDEARKLLRWGQQNFT 283 >gi|212702629|ref|ZP_03310757.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098] gi|212673901|gb|EEB34384.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098] Length = 285 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 2/232 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ + G V+ E+ P+ PASLTK+MT YVV +K + T I + A S Sbjct: 39 MINLSNGKVLYEHNPNLSIPPASLTKVMTMYVVMDRIKLGRLKRNTSIRVHPTA-RVGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + +T+D L + V S ND A+AI++ + + F MN+ ++ LG++ T F Sbjct: 98 SMRLRPRQKVTVDQLLTGMAVASGNDAAMAISQHISGNSRNFTHLMNHKARQLGMTRTVF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ G TTARDMA L+ PQ M Y ++ G+ TN +G G Sbjct: 158 KNPTGLPAAGQRTTARDMATLARAYLRSHPQAMRYHSLRSFRFNGRTLGATNTMLG-IPG 216 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+T ASG+NI+ +A +G L+ V++G R R+ V+ SL+ GF Sbjct: 217 VDGLKTGWTVASGYNIIVTARRGKTRLLVVVMGGRSRAARDMVAHSLIEAGF 268 >gi|293609789|ref|ZP_06692091.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828241|gb|EFF86604.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 439 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 152/301 (50%), Gaps = 27/301 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVFSF-----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + LK+++ + TP+ + ++ S K G +++D L LIV SAND Sbjct: 69 IALKEIKAGKLKKEEIITATPVV---SVVQWDESQMYLKAGEQISVDQLLAGLIVMSAND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV +AE + +FVQ MN ++ LG+ THF N G+ H+TTA D+++LS + Sbjct: 126 AAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLLSQAVI 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--- 235 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 186 KQTPEYLHYSKMPNFSYNQRFHHATNLALKYDPYVDGLKTGYTKAAGYNLALTASRPSFS 245 Query: 236 ----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 + L+ ++LG R +++ L+++ + D I +Q L E+P Sbjct: 246 SDLTQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVIIP-------EQKLIAELPV 298 Query: 292 I 292 + Sbjct: 299 V 299 >gi|320668144|gb|EFX35013.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 388 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG + N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQIFTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|311280463|ref|YP_003942694.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308749658|gb|ADO49410.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 399 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 45 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKDSDLVTVGNDA--WA 102 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MNN Sbjct: 103 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYV 162 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 163 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLN 222 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G L++ ++G R S LL+ Sbjct: 223 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLVSAVMGGRTYKGRETESKKLLT 282 Query: 262 MGF 264 GF Sbjct: 283 WGF 285 >gi|242238535|ref|YP_002986716.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya dadantii Ech703] gi|242130592|gb|ACS84894.1| Beta-lactamase [Dickeya dadantii Ech703] Length = 403 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +TI K+A + Sbjct: 49 YILIDYNSGKVLAEKNADVRRNPASLTKMMTSYVIGQAIKAGKINPNDIVTIGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ +I++S ND VA+A+ + ++ F+ MN Sbjct: 107 TGNPDFQGSSLMFLKPGDRVPVHMLNKGIILQSGNDACVAMADYVAGSQDAFISLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KSLGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPNEYATYKEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + + L DG+KTG T ++G+N+VASA +G LI+ +LG R S LL+ Sbjct: 227 RNGLLWDSSLSVDGIKTGHTASAGYNLVASATEGQMRLISAVLGGRTFKGRESESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|270263700|ref|ZP_06191969.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13] gi|270042584|gb|EFA15679.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13] Length = 428 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K +T+ ++A + Sbjct: 74 YVLIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGKIGPEDMVTVGQDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MN Sbjct: 132 TGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYV 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 192 SKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 251 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA +G LI+ +LG R S L Sbjct: 252 RNGLLW--DTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKL 309 Query: 260 LSMGF 264 L+ GF Sbjct: 310 LTWGF 314 >gi|153810795|ref|ZP_01963463.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174] gi|149833191|gb|EDM88273.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174] Length = 422 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 129/245 (52%), Gaps = 9/245 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG + D +PAS+TK+MT ++F L LT P+T S +A Sbjct: 69 PSAVLMEAETGQFVYAKDKDTRRSPASVTKIMTLILIFDHLHAGDISLTDPVTTSAHAKS 128 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + +E++FV MN + LG+ Sbjct: 129 MGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFISGSEQEFVAQMNLRADRLGMK 188 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKK 199 THF++ G+ HYTTA D+AI+S + +P+ + Y I IK Sbjct: 189 NTHFIDCCGLTDSDEHYTTANDIAIMSRELIVKYPKILDYSSIWMETIIHETSQGIKEFG 248 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + T+ G G+KTG T +GF + A+A + LI+V++ A D R K +A+L Sbjct: 249 LTNTNRLIRTYPGCRGLKTGSTSKAGFCLSATAERNSLKLISVVMAAPDYKARLKDAAAL 308 Query: 260 LSMGF 264 L GF Sbjct: 309 LDYGF 313 >gi|91776847|ref|YP_546603.1| penicillin-binding protein 6 [Methylobacillus flagellatus KT] gi|91710834|gb|ABE50762.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Methylobacillus flagellatus KT] Length = 385 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D N+ VIAE + PASLTK+MTAY+ F +K LT + +S A + Sbjct: 42 YQLYDFNSERVIAEQDGNSRVEPASLTKIMTAYLAFKAIKNGHLTLTQTLPVSVKAWKVE 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D L +I++S ND ++A+AE + +E+ F + MN + LG+ T Sbjct: 102 GSKMFIEPNKPVTVDELLHGMIIQSGNDASIALAEGIAGSEEGFAELMNKEAARLGMKGT 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGT 209 H++NA G+ HYTTA D+A+L+ + DFP Y + +K PN N + Sbjct: 162 HYVNATGLPDPQHYTTAHDLALLAAALIRDFPDHYKRLYSMKEYTYNKISQPNRNRLLWL 221 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T ++G+ +V SA +GD +I+V+LGA R S LL+ GF Sbjct: 222 DPYVDGMKTGHTKSAGYCLVTSAKRGDTRMISVVLGAPSDAARATESQKLLNYGF 276 >gi|330818433|ref|YP_004362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] gi|327370826|gb|AEA62182.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] Length = 434 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 81 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALSTKKISMEQIVTPSEAVRRVG 140 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+S Sbjct: 141 TDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNAEAQKLGMS 200 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS R+ DFP Y + F +K + PN N + Sbjct: 201 GTHFADVNGMPDPQHYTTAGDLAKLSARLIRDFPDYYNIFSVKEFSYNNIRQPNRNRLLW 260 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + G + L++V++G + R + S +L+ Sbjct: 261 IDPTVDGLKTGHTQAAGYCLIASAKRALPGADGGTRRLVSVMMGETKESDRVQDSMKMLN 320 Query: 262 MGF 264 G+ Sbjct: 321 YGY 323 >gi|291550443|emb|CBL26705.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14] Length = 390 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 17/272 (6%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D PAS+TK+MT ++F L+ L ++ S+ A+ Sbjct: 40 PSGILMEMSTGTVLFEKDADTARPPASVTKIMTMLLIFDALENGTISLDDEVSTSEYAAS 99 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T+ LK + V SAND V ++E +C E++FV+ MN +K LG+ Sbjct: 100 MGGSQVFLEPGEMQTVGTLLKCISVASANDACVTMSECICGNEQEFVKQMNERAKGLGMK 159 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 T+F+N +G+ GH +ARD+A++S + T +PQ Y + +G G Sbjct: 160 HTNFVNCNGLDADGHEMSARDIALMSRELMTRYPQIKDYCTVWMENITHTTARGSSEFG- 218 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + A G+KTG T + F + A+A + LIAVI+GA D +R K + + Sbjct: 219 -LTNTNKLIRQYEYATGLKTGSTGKAKFCVSATASKNGVDLIAVIMGAEDSKSRFKDAVT 277 Query: 259 LLSMGF-----YNKTDRKKINYIIKDFYQQNL 285 LL+ GF YN ++K ++K + +L Sbjct: 278 LLNYGFGKCQIYNAKEQKLPEVLVKGGKEDHL 309 >gi|291536082|emb|CBL09194.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 348 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 135/239 (56%), Gaps = 8/239 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ +TG V+ E +PAS+TK+MT ++F L K+ L +T+S+ A+ S Sbjct: 1 MEASTGAVVYEKNSHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQ 60 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+ Sbjct: 61 VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNTNW 205 N G+ GH T+A D+A++S + T +P+ Y I I KG NTN Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGF 239 >gi|269139992|ref|YP_003296693.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda EIB202] gi|267985653|gb|ACY85482.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda EIB202] gi|304559825|gb|ADM42489.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 403 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDA--WA 106 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ N ++ + + S ND VA+A+ + ++ FV MN+ Sbjct: 107 TGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTHFETVHGLDASGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQTN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T + DG+KTG T ++G+N+VASA +G+ LI+ ++G R S L Sbjct: 227 RNGLLWD--TSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|89074850|ref|ZP_01161304.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89049425|gb|EAR54987.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 459 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 2/236 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D NTG ++A N + PAS TKLM Y+V L + L + + + + A Sbjct: 106 FILIDANTGRIVASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLVPEVAWRTG 165 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T+ LG+ T Sbjct: 166 GSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNT 225 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF G+ H++TA D+ +L I D+PQY H+F K E + PN N + T+ Sbjct: 226 HFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTY 285 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS--LIAVILGALDRNTRNKVSASLLSMGF 264 A GMKTG T A+G+++V+SA D L+AV+LG N S L + GF Sbjct: 286 QYATGMKTGSTEAAGYSLVSSAKMPDNPMKLVAVVLGTQSLNDVAAQSKGLFNYGF 341 >gi|220931542|ref|YP_002508450.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] gi|219992852|gb|ACL69455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] Length = 397 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 10/265 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+ NTG ++ E P PAS+TK+MT +V L++ +A L I +S+ A+ S Sbjct: 44 LMQVNTGEILYEKNPHQKLPPASMTKIMTMLLVMEALEDGRASLRDSIIVSERAASMGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MTL++ +K + + SAND VA+AE L TE+ FV+ MN ++ LG T+F Sbjct: 104 QVYLEPGEEMTLEDLMKAIAIASANDACVAVAEYLYGTEEDFVKKMNEKARELGCKNTYF 163 Query: 153 MNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNW 205 N +G+ G+YT+A D+AI+S R +P+ + + ++ ++ NTN Sbjct: 164 YNTNGLPPGDPSVEGNYTSAYDLAIMS-RELLKYPEVLKWTSTWIDYLRDGEFVLNNTNR 222 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF- 264 V + G DG+KTG+T + F + +A + IAVI+GA R K +A LLS GF Sbjct: 223 LVRHYKGVDGIKTGYTEEAKFCVATTAARNGIRFIAVIMGADTSKARFKEAAQLLSYGFS 282 Query: 265 -YNKTDRKKINYIIKDFYQQNLSNE 288 Y +I + QN NE Sbjct: 283 KYRSFIVADKEEVIDEITIQNAKNE 307 >gi|291559238|emb|CBL38038.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SSC/2] Length = 399 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 14/258 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ + ++ D PAS+TK+M+ ++F LK+ K LT +T+S++A+ S Sbjct: 46 VMEQESKEILFAKDKDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +K +++ SAND VA+AE +C +E+ FV MN ++ LG+ T F Sbjct: 106 QVFLETGEKQQVQTLIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNTN 204 NA G+ GH T+A D+A+++ + +P+ Y +I I KG+K NTN Sbjct: 166 QNACGLDAKGHVTSAYDIALMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTN 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G GMKTG T +GF + A+A + +IAV++G R K + LL GF Sbjct: 226 KLIRQYHGCTGMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARILLDYGF 285 Query: 265 YN------KTDRKKINYI 276 N +T RK+I I Sbjct: 286 SNCQRIHSETTRKEIGRI 303 >gi|32490923|ref|NP_871177.1| hypothetical protein WGLp174 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166129|dbj|BAC24320.1| dacA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 410 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK------ 84 Y L+D +G V+AE D PASLTK+MT+Y++ ++K + + ISK Sbjct: 55 YILIDYYSGQVLAEMNADSKRLPASLTKMMTSYIIGMYIKSGHIKSSDLVKISKESWMLG 114 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S S+ K G +++ + + +I++S ND VAIA + ++ FV+ MNN +K Sbjct: 115 NPSLKGSSSMFLKPGDLVSISDLSRGIILQSGNDACVAIANYISGNQESFVELMNNYAKK 174 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 L L THF N HG+ G +T+ARDM+I+ ++ IK +Y+ Y + + ++ Sbjct: 175 LKLKNTHFKNVHGLDNAGQFTSARDMSIIGTYLIKDVHEEYIKYKEKEFTYNNIRQLNRN 234 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N L DG+KTG T +G+N+VASAI + LI+VILG N R+ S SLL+ G Sbjct: 235 NLLWDKTLNVDGIKTGHTKLAGYNLVASAINENMRLISVILGGRSINERDNGSKSLLNWG 294 Query: 264 F 264 Sbjct: 295 L 295 >gi|320177929|gb|EFW52913.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] Length = 388 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++AS + G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|307130041|ref|YP_003882057.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] gi|306527570|gb|ADM97500.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] Length = 403 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +TI K+A + Sbjct: 49 YILIDYNSGKVLAEKNADARRNPASLTKMMTSYVIGQAIKSGKISPNDVVTIGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPDFQGSSLMFLKPGDRVPVYLLNKGIILQSGNDACVAMADYVAGSQDSFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTNFKTVHGLDADGQYSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + + L DG+KTG T ++G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDSSLAVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|186474981|ref|YP_001856451.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum STM815] gi|184191440|gb|ACC69405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum STM815] Length = 409 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 136/259 (52%), Gaps = 11/259 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A PD PASLTKLMTAY+ F L KK + I S+ Sbjct: 55 WVLVDATSNQVLASGNPDERVEPASLTKLMTAYLTFEALASKKITMDQSINPSEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 115 NDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQKLGMK 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+AILS R+ D+P Y + F +K K PN N + Sbjct: 175 NTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + + L+ V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRSLPGVPDASRRLVTVMMGEQKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYIIK 278 G+ Y+ K N +++ Sbjct: 295 YGYSAYDAVRLYKANQVVE 313 >gi|229514750|ref|ZP_04404211.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|229348730|gb|EEO13688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|15838821|ref|NP_299509.1| penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c] gi|9107379|gb|AAF85029.1|AE004035_8 penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c] Length = 396 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 138/240 (57%), Gaps = 7/240 (2%) Query: 31 YTLLDTNTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D +G V+A EN H PASLTK+MT+YV+ + +K K + +++NA Sbjct: 47 WVVMDFASGQVLAGENIHTHL-APASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRK 105 Query: 87 --SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ Sbjct: 106 GGAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQR 165 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +G+ +HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N Sbjct: 166 IGMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRN 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 226 LLLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGF 285 >gi|153829019|ref|ZP_01981686.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39] gi|148875448|gb|EDL73583.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|332799334|ref|YP_004460833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] gi|332697069|gb|AEE91526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] Length = 388 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 142/269 (52%), Gaps = 9/269 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L+I + + I P + + + K P L+D TG ++ E PAS+TK+MT Sbjct: 11 ILLITLLMLFIIISPVAAAPQLDIKSPSAILMDAGTGTILFEKNSHEKMEPASITKIMTM 70 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + F L+ K L+ + IS+ A S G TL+ LK +++ SAND ++A Sbjct: 71 IIAFEALESGKVSLSDIVRISERAWGTGGSQVFLAPGEEQTLETLLKCIVIASANDASMA 130 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + + + FV+ MN+ +K LG+S T+F+N HG+ HYTTA D+A++S R +P Sbjct: 131 VAEHIGGSVEGFVKLMNDKAKQLGMSNTNFVNPHGLSSPEHYTTAHDIALMS-RELVKYP 189 Query: 183 QYMHY--FQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + ++ I LE KK NTN +G + G DG+KTGF +G +A +G Sbjct: 190 LFFNWSTIWIDYLEHTDKKRDATMLANTNKLLGKYEGLDGLKTGFHNKAGHCFAGTARRG 249 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264 D LI+V+L A + R + + LL GF Sbjct: 250 DFRLISVVLNADTSSQRFEDTVKLLDYGF 278 >gi|229522951|ref|ZP_04412365.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229527763|ref|ZP_04417154.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229334125|gb|EEN99610.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229340168|gb|EEO05176.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|15601038|ref|NP_232668.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587136|ref|ZP_01676912.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121728082|ref|ZP_01681119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|147671927|ref|YP_001215796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|153823905|ref|ZP_01976572.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|227811892|ref|YP_002811902.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229506574|ref|ZP_04396083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|229510630|ref|ZP_04400110.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229517239|ref|ZP_04406684.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229606053|ref|YP_002876757.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254850532|ref|ZP_05239882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|298500115|ref|ZP_07009921.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] gi|9657668|gb|AAF96181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548672|gb|EAX58722.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121629630|gb|EAX62051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|126518573|gb|EAZ75796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|146314310|gb|ABQ18850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|227011034|gb|ACP07245.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|227014938|gb|ACP11147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229345275|gb|EEO10248.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229353075|gb|EEO18015.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229356925|gb|EEO21843.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|229372539|gb|ACQ62961.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254846237|gb|EET24651.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|297542096|gb|EFH78147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|153215272|ref|ZP_01949916.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|124114811|gb|EAY33631.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHTDDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|113460464|ref|YP_718526.1| penicillin-binding protein [Haemophilus somnus 129PT] gi|112822507|gb|ABI24596.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Haemophilus somnus 129PT] Length = 388 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+A PD +PASLTK+MT+YVV +K+ K LT +TI ++A Sbjct: 36 YILMDYHSGAVLAAFNPDQRQHPASLTKMMTSYVVGDAIKQGKISLTDTVTIDESAWGKN 95 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +++ S ND VAIAE + +E+ F++ MN GL Sbjct: 96 FPGSSKMFLNLNQQVSVADLNRGIVIVSGNDACVAIAEHIAGSERNFIELMNKYVAKFGL 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+FM HG+ Y++ARDMAI+ I D P+ + K K N N + Sbjct: 156 KNTNFMTVHGLDDDNQYSSARDMAIIGRHIIHDLPEEYKIYAEKEFTFNKIKQHNRNGLL 215 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA+ + LI+V++G R S LL GF Sbjct: 216 WDKSIKVDGMKTGHTNKAGYNLVASAVNNNNMRLISVVMGVATHKGREIESKKLLQWGFA 275 Query: 266 N 266 N Sbjct: 276 N 276 >gi|327485477|gb|AEA79883.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4] Length = 389 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|218695635|ref|YP_002403302.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 55989] gi|218352367|emb|CAU98141.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli 55989] Length = 388 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAVNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|229526111|ref|ZP_04415515.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] gi|229336269|gb|EEO01287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] Length = 389 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHAGDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|297579619|ref|ZP_06941546.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] gi|297535265|gb|EFH74099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] Length = 389 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|161504189|ref|YP_001571301.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865536|gb|ABX22159.1| hypothetical protein SARI_02296 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 403 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|260597057|ref|YP_003209628.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter turicensis z3032] gi|260216234|emb|CBA29137.1| D-alanyl-D-alanine carboxypeptidase dacA [Cronobacter turicensis z3032] Length = 370 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +TI +A + Sbjct: 16 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDVVTIGNDA--WA 73 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MN+ Sbjct: 74 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYV 133 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 134 TALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQTN 193 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +G+N+VASA +G LI+ ++G R S L Sbjct: 194 RNGLLWD--NSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKL 251 Query: 260 LSMGF 264 L+ GF Sbjct: 252 LTWGF 256 >gi|16764014|ref|NP_459629.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179236|ref|YP_215653.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615147|ref|YP_001589112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550827|ref|ZP_02344583.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990643|ref|ZP_02571743.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231649|ref|ZP_02656707.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236628|ref|ZP_02661686.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240484|ref|ZP_02665416.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264432|ref|ZP_02686405.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465811|ref|ZP_02699693.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823261|ref|ZP_02835261.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442745|ref|YP_002039879.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448720|ref|YP_002044671.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471751|ref|ZP_03077735.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736722|ref|YP_002113755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250303|ref|YP_002145612.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245247|ref|YP_002214626.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389790|ref|ZP_03216401.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930599|ref|ZP_03221529.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351925|ref|YP_002225726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856103|ref|YP_002242754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582473|ref|YP_002636271.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911587|ref|ZP_04655424.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419149|gb|AAL19588.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62126869|gb|AAX64572.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364511|gb|ABX68279.1| hypothetical protein SPAB_02915 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401408|gb|ACF61630.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407024|gb|ACF67243.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458115|gb|EDX46954.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712224|gb|ACF91445.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631937|gb|EDX50457.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214006|gb|ACH51403.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290404|gb|EDY29760.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939763|gb|ACH77096.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602235|gb|EDZ00781.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320533|gb|EDZ05736.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271706|emb|CAR36537.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324158|gb|EDZ11997.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331044|gb|EDZ17808.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334030|gb|EDZ20794.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339760|gb|EDZ26524.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340474|gb|EDZ27238.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347141|gb|EDZ33772.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707906|emb|CAR32194.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467000|gb|ACN44830.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245910|emb|CBG23711.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992371|gb|ACY87256.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157238|emb|CBW16725.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911668|dbj|BAJ35642.1| D-alanyl-D-alanine carboxypeptidase DacA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084907|emb|CBY94697.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226217|gb|EFX51268.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613231|gb|EFY10174.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621299|gb|EFY18156.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623719|gb|EFY20557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628991|gb|EFY25770.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631713|gb|EFY28467.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637551|gb|EFY34253.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641891|gb|EFY38521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646735|gb|EFY43241.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651436|gb|EFY47816.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653113|gb|EFY49447.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658833|gb|EFY55088.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664897|gb|EFY61090.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668899|gb|EFY65051.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670595|gb|EFY66728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675336|gb|EFY71412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682193|gb|EFY78218.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684977|gb|EFY80974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713701|gb|EFZ05272.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128954|gb|ADX16384.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193964|gb|EFZ79166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197944|gb|EFZ83066.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202009|gb|EFZ87069.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207142|gb|EFZ92095.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210407|gb|EFZ95298.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214331|gb|EFZ99082.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221482|gb|EGA05896.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231084|gb|EGA15200.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234084|gb|EGA18173.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238221|gb|EGA22279.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242545|gb|EGA26569.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248478|gb|EGA32412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259234|gb|EGA42877.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261642|gb|EGA45217.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264824|gb|EGA48325.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272339|gb|EGA55746.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622381|gb|EGE28726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626964|gb|EGE33307.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987582|gb|AEF06565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 403 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|225677145|ref|ZP_03788144.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590812|gb|EEH12040.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 368 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 119/214 (55%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +LD + I ++ D P+S++KLMT Y+ F +LK + +S+ A E Sbjct: 31 VVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERRG 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV MN ++NL L+ +H Sbjct: 91 SSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSH 150 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+N+ G H+ A+D+ +L+ RI TDFP+Y F + L N N + + Sbjct: 151 FVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDI 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G DG+KTG+T A G+ IVASA + D+ + AV+ G Sbjct: 211 GVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNG 244 >gi|42520006|ref|NP_965921.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99035928|ref|ZP_01314975.1| hypothetical protein Wendoof_01000183 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409743|gb|AAS13855.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 368 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 119/214 (55%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +LD + I ++ D P+S++KLMT Y+ F +LK + +S+ A E Sbjct: 31 VVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERRG 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV MN ++NL L+ +H Sbjct: 91 SSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSH 150 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+N+ G H+ A+D+ +L+ RI TDFP+Y F + L N N + + Sbjct: 151 FVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDI 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G DG+KTG+T A G+ IVASA + D+ + AV+ G Sbjct: 211 GVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNG 244 >gi|325661128|ref|ZP_08149755.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472635|gb|EGC75846.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium 4_1_37FAA] Length = 394 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 130/242 (53%), Gaps = 12/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + PAS+TK+MT ++ +++ K L +T+S+ A+ S Sbjct: 63 LMEASTGKIIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGS 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF Sbjct: 123 QVFLEPGEVQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNARAKGLGMEHTHF 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYPN 202 +N +G+ GH TTA D+A++S + T P+ Y I KG G N Sbjct: 183 VNCNGLDADGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFG--LSN 240 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + A G+KTG T + F I A+A + LIAVI+ A D R K + +LL+ Sbjct: 241 TNKLVRHYPYATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNY 300 Query: 263 GF 264 GF Sbjct: 301 GF 302 >gi|153803461|ref|ZP_01958047.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3] gi|124121011|gb|EAY39754.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3] Length = 389 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L I D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLXS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|238920432|ref|YP_002933947.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] gi|238870001|gb|ACR69712.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] Length = 450 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++G V+ E D +PASLTK+M +YV+ LK K + + K+A + Sbjct: 92 YILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQALKSGKIAPGDMVVVGKDA--WA 149 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN Sbjct: 150 TGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIALADHVAGSQDTFVNLMNQYV 209 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 GL THF HG+ G Y++ARDMA++S R+ D P + K + N Sbjct: 210 SAWGLKNTHFQTVHGLDSEGQYSSARDMALISQRLIADVPDEYQLNKEKEFTFNKIRQIN 269 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTGFT +G N+VASAI G LI+V+LGA R S L Sbjct: 270 RNRLLWD--SSLNVDGVKTGFTSGAGHNLVASAIDGPMRLISVVLGAPTDRVRFDESKKL 327 Query: 260 LSMGF 264 L+ GF Sbjct: 328 LTWGF 332 >gi|170769785|ref|ZP_02904238.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170121399|gb|EDS90330.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 390 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVDMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P + H + K L G N Sbjct: 159 EKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIKD---------FYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K+ F+ E+PNI + Sbjct: 277 LRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQGFWMVLPKTEIPNIKAKYTLD 336 Query: 300 QKEI 303 KE+ Sbjct: 337 GKEL 340 >gi|16759596|ref|NP_455213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142631|ref|NP_805973.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414228|ref|YP_151303.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363151|ref|YP_002142788.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|25297769|pir||AH0580 D-alanine carboxypeptidase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501888|emb|CAD05114.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138262|gb|AAO69833.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128485|gb|AAV77991.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094628|emb|CAR60150.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|291613195|ref|YP_003523352.1| beta-lactamase [Sideroxydans lithotrophicus ES-1] gi|291583307|gb|ADE10965.1| Beta-lactamase [Sideroxydans lithotrophicus ES-1] Length = 419 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 129/251 (51%), Gaps = 5/251 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G + E + PA LTKLMTAYVVFS +K+ K LT + S A+ Sbjct: 75 YALYDYTSGQFLVEQNANAHIPPAQLTKLMTAYVVFSAIKQGKLSLTRKLLPSAYATRMQ 134 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 G ++++ L+ LIV+SAND A +AE+L E MNN ++ LGL Sbjct: 135 NDEPRMYLTAGKEVSVEELLRGLIVQSANDAARVLAETLANHEMALADAMNNEAQQLGLK 194 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF+NA G HY++A D+A+++ + DFP+Y H + + + G N N + Sbjct: 195 DTHFVNATGTPDAQHYSSAHDLALIAAALVRDFPEYYHIYSQREYQYNGINQFNRNRLLW 254 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 DG+ TG + F +VASA + ++ LI+V++G R+ S LL+ GF Sbjct: 255 MDPFVDGLATGNNESEEFYMVASAKRDERRLISVVIGTATEKLRSSESQRLLNYGF---Q 311 Query: 269 DRKKINYIIKD 279 D + I KD Sbjct: 312 DFEAIRLYAKD 322 >gi|158423796|ref|YP_001525088.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS 571] gi|158330685|dbj|BAF88170.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS 571] Length = 426 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 140/275 (50%), Gaps = 12/275 (4%) Query: 4 FLVIIAMAMLSNIFPFLSI----AET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 FL A A+L+ + L + A+T +P TL+D +G ++ E P + Sbjct: 29 FLSAGAGALLTVVAALLPLQAARAQTAFQTAVPEATLVDFASGTILFEKNAQGRVAPGGI 88 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNST---FKKGSTMTLDNALKLL 111 K+MTA V+F ++ K L TP +S+NA PS S + + + L+ Sbjct: 89 VKIMTAAVIFDQIRAGKITLDTPFYVSENAWRRGGGPSGGAAMFVPVKSQVRVGDLLQGA 148 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V S ND A+A+AE L TE +F Q MN + LG+S + F NA G +T ARDMA Sbjct: 149 LVVSGNDAAIALAEGLSGTESEFAQRMNAKAAELGMSGSQFRNATGFADPDQFTNARDMA 208 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +L+ I + P+ F + +E K N N + +GADG+ + +G+++V S Sbjct: 209 VLARSIIRNDPELYKIFAVPDIEWSKIKQRNRNTLLNAGIGADGLHMSWVKDAGYHLVGS 268 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 A+QG+Q LI V++GA R + + LL GF++ Sbjct: 269 AVQGNQRLIVVVMGAKTEKERLEEARRLLEWGFHS 303 >gi|291616858|ref|YP_003519600.1| DacC [Pantoea ananatis LMG 20103] gi|291151888|gb|ADD76472.1| DacC [Pantoea ananatis LMG 20103] gi|327393284|dbj|BAK10706.1| penicillin-binding protein 6 precursor DacC [Pantoea ananatis AJ13355] Length = 400 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+ E+ D +PASLTK+MT+YVV +K K +T+ ++A + Sbjct: 42 WILIDYASGKVLTESNADQRLDPASLTKMMTSYVVGQAIKSGKIKPDDMVTVGQDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND +A+A+ + ++ F+ MNN Sbjct: 100 TGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDACIALADYVAGSQDSFIGLMNNYV 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THFM HG+ G Y+TARDMA++ + D P+ + K + N Sbjct: 160 KALGLKNTHFMTVHGLDADGQYSTARDMALIGQALIRDVPEEYALNKEKEFTFNNIRQMN 219 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G N+VASA +GD LI+V+LG R + S L Sbjct: 220 RNRLLWS--SNLKVDGIKTGHTSGAGNNLVASATEGDMRLISVVLGTASDAIRFRESEKL 277 Query: 260 LSMGF 264 L+ GF Sbjct: 278 LTWGF 282 >gi|213583748|ref|ZP_03365574.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 401 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 47 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 104 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 105 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 164 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 165 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 224 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 225 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 284 Query: 262 MGF 264 GF Sbjct: 285 WGF 287 >gi|238920819|ref|YP_002934334.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella ictaluri 93-146] gi|238870388|gb|ACR70099.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] Length = 403 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K +T+ K+A + Sbjct: 49 YILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDA--WA 106 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ N ++ + + S ND VA+A+ + ++ FV MN+ Sbjct: 107 TGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQTN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T + DG+KTG T ++G+N+VASA +G+ LI+ ++G R S L Sbjct: 227 RNGLLWD--TSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|213425100|ref|ZP_03357850.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289823664|ref|ZP_06543276.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 427 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 73 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|331653434|ref|ZP_08354435.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M718] gi|331048283|gb|EGI20359.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M718] Length = 390 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 134/261 (51%), Gaps = 21/261 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LI+V++GA R + + L Sbjct: 219 RNGLLW--DKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLISVVMGADSAKGREEEAKKL 276 Query: 260 LSMGFYNKT------DRKKIN 274 L G N T RKK+ Sbjct: 277 LRWGQQNFTTVQILHRRKKVG 297 >gi|209521266|ref|ZP_03269986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] gi|209498308|gb|EDZ98443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] Length = 409 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L KK + I S+ Sbjct: 55 WVLVDATSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 115 NDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQRLGMK 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+AILS R+ D+P Y + F +K K PN N + Sbjct: 175 HTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRPMPGATDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ T K N ++ Sbjct: 295 YGYTAYDTTRLYKANQVV 312 >gi|238790457|ref|ZP_04634227.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] gi|238721483|gb|EEQ13153.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 29 YVLIDYNSGKVLAEMNADVRRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 86 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 87 TGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 146 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 147 NALGLKNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 206 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 207 RNGLLWD--TSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTFKGRETESKKL 264 Query: 260 LSMGF 264 L+ GF Sbjct: 265 LTWGF 269 >gi|283784410|ref|YP_003364275.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] gi|282947864|emb|CBG87425.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] Length = 403 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 TALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSVYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTAKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|261868788|ref|YP_003256710.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391084|ref|ZP_06635418.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414120|gb|ACX83491.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951618|gb|EFE01737.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 396 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YVV +K+ K T +TI +++ + Sbjct: 44 YVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGQAIKQGKIRNTDMVTIGESSWGHK 103 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +I+ S ND VA+AE + T FV MN + GL Sbjct: 104 FPGSSKMFLNLNQQVSVADLHRGIIIVSGNDACVAMAEHVSGTVMNFVDTMNKYVEQFGL 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ + Y++ARDMAI+ RI D P+ + K K PN N Sbjct: 164 KNTYFTTVHGLDEDNQYSSARDMAIIGARIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASAI + LI+V++G R S LL G Sbjct: 224 W--DKTINVDGMKTGHTDKAGYNLVASAISPNNMRLISVVMGVPTYKGREVESKKLLQWG 281 Query: 264 FYN 266 F N Sbjct: 282 FAN 284 >gi|163752391|ref|ZP_02159585.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99] gi|161327728|gb|EDP98916.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99] Length = 348 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 126/237 (53%), Gaps = 8/237 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D NTG +IAE NPASLTK+MT+YV+ +K +TISK A +P Sbjct: 1 MDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPEDEVTISKKAWSKNFPD 60 Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G +T+D+ +I++S ND VA+AE + TE FV MN+ + LG+ + Sbjct: 61 SSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAIQLGMKDS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 F N+HG+ H +TA DMA+L + D P ++ K G K N N W Sbjct: 121 FFENSHGLDAKNHKSTAYDMALLGAALIRDVPDEYAVYKQKSFTYNGIKQYNRNGLLWDK 180 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+N+V SA + LI+V++G N R S LL+ GF Sbjct: 181 S--MNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSENARKAESKKLLNYGF 235 >gi|213646564|ref|ZP_03376617.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 427 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 73 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|117924769|ref|YP_865386.1| penicillin-binding protein 6 [Magnetococcus sp. MC-1] gi|117608525|gb|ABK43980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Magnetococcus sp. MC-1] Length = 386 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%) Query: 21 SIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 S A LP++ + D ++G ++ + D P PASLTK+MT Y+++ L++ Sbjct: 27 SQAWAEGLPFHVRAKAAIMGDIDSGAILFDQNSDMPLPPASLTKVMTLYLLYEALQKGDI 86 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L T + +S+NA + S + K G + +++ ++ + V+S ND V +AE L +EK F Sbjct: 87 TLETSMPVSRNAWQREGSKTFVKVGDKIRVEDLIRGIAVQSGNDACVVVAEYLGGSEKGF 146 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN + LG+ A+HF NA G+ GH ++ARD IL+ + FP+Y HY Q K Sbjct: 147 ADMMNAKAAALGMEASHFANASGLPAPGHQSSARDFFILTAALMKHFPEYAHYVQQKEYT 206 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G + N N + G+KTG T +G+ ++A + Q L +V++G+ R + Sbjct: 207 FNGIRQVNRNHLLWKDKYITGLKTGHTSEAGYCLIAVREKDGQRLCSVVMGSSSTEVREE 266 Query: 255 VSASLLSMG 263 S LL G Sbjct: 267 ESMRLLHYG 275 >gi|313114949|ref|ZP_07800445.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622742|gb|EFQ06201.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] Length = 368 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 2/234 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E D AS+TK+MT + F + + + + T + +S++A S Sbjct: 22 LIDQQTGTILYEKNADQQMPIASITKVMTLLLTFEAVHDGRIAMDTLVPVSEHAYHMGGS 81 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TLD +K + V SAND AVA+AE + +E FVQ MN + LG+ T F Sbjct: 82 QIWLEPGEQFTLDEMIKAICVSSANDAAVAVAELVGGSEPGFVQMMNARAAELGMVNTTF 141 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTF 210 NA G+ GH +TA D+AI+S I P+ +HY I ++G + NTN + + Sbjct: 142 HNACGLDTEGHLSTAHDVAIMSREILNTCPEVLHYTGIWTDTLRGGATQLVNTNKLLKRY 201 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G+KTG T +G I ASA + LIAV+LG+L + R + +LL GF Sbjct: 202 NGITGLKTGTTSGAGVCISASATRDGLDLIAVVLGSLSSSERFTAATTLLDYGF 255 >gi|110680629|ref|YP_683636.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh 114] gi|109456745|gb|ABG32950.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh 114] Length = 389 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 9/241 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----LTTPITISKNASE 88 ++D TG V+ D P PAS++KLMT Y+ F ++ KA L + +S++A Sbjct: 30 VMDQTTGTVLLNKNADAPLPPASMSKLMTLYMAFEAVRRGKADGGLDLNERLPVSEHAQS 89 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLG 146 Y S+ + G T+++++ L+ +IV S ND V IAE+L TE F + M ++ LG Sbjct: 90 YGGSSMFLRSGETVSVEDLLRGIIVVSGNDACVVIAEALSPDGTEYGFARMMTQRAQQLG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT--- 203 ++ + F+NA G Q GH + RD+AIL+ R+ TDFP++ F + N+ Sbjct: 150 MNNSVFINASGWPQTGHVMSMRDLAILADRLITDFPEFYPMFAETEFPFDNRVPSNSRNR 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + +GADG+KTG T +G+ +V SA QGD+ +I VI G R + S ++++ Sbjct: 210 NPVLTMGIGADGLKTGHTQEAGYGLVGSAKQGDRRIIFVITGLETTAARAQESQAIVNWA 269 Query: 264 F 264 F Sbjct: 270 F 270 >gi|295675328|ref|YP_003603852.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1002] gi|295435171|gb|ADG14341.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1002] Length = 409 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 11/258 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L KK + I S+ Sbjct: 55 WVLVDATSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRVR 114 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 115 NDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQKLGMK 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+AILS R+ D+P Y + F +K K PN N + Sbjct: 175 NTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLLW 234 Query: 209 TFLGADGMKTGFTCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + L++V++G + R + S +L+ Sbjct: 235 IDPTVDGLKTGHTQAAGYCLIASAKRPLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLN 294 Query: 262 MGF--YNKTDRKKINYII 277 G+ Y+ T K N ++ Sbjct: 295 YGYTAYDTTRLYKANQVV 312 >gi|37525261|ref|NP_928605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784688|emb|CAE13588.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase fraction A) (DD-peptidase) (DD-caroboxypeptidase) (PBP-5) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 389 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +T+ +A + Sbjct: 35 YILIDYNSGKVLAEMNADAHRDPASLTKMMTSYVIGQAIKSGKIHPSDMVTVGTDA--WA 92 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+A+ + +++ FV MN Sbjct: 93 TGNPVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAGSQESFVNLMNGYV 152 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL T+F HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 153 KSLGLKNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYTIYKEKEFTYNNIRQTN 212 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T A+G+N+VASA +GD LI+ +LG R S LL+ Sbjct: 213 RNGLLWDKSLNVDGIKTGHTSAAGYNLVASATEGDMRLISAVLGGHTYKGRETESKKLLT 272 Query: 262 MGF 264 GF Sbjct: 273 WGF 275 >gi|320539093|ref|ZP_08038764.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Serratia symbiotica str. Tucson] gi|320030731|gb|EFW12739.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Serratia symbiotica str. Tucson] Length = 403 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 124/245 (50%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K +T+ ++A + Sbjct: 49 YILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGHTLKAGKIGQEDLVTVGQDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + K S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPVFKGSSLMFLRPGDRVSVAKLSRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 167 NKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 227 RNGLLW--DTSLNVDGIKTGHTDAAGYNLVASATAGQMRLISAVLGGRTYKGRETESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|198246188|ref|YP_002216147.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940704|gb|ACH78037.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623893|gb|EGE30238.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSSKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|294649783|ref|ZP_06727186.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] gi|292824334|gb|EFF83134.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] Length = 438 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 144/275 (52%), Gaps = 14/275 (5%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A L NI P ET + ++++D +G +IAE+ PASLTK+M AYV Sbjct: 18 LAHATLLNISP-----ETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALK 72 Query: 68 FLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ++ K IT + N + S K+G +++D L LIV SAND A+ +AE Sbjct: 73 EIEAGKLRKEDVITATSVVNTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAE 132 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + +F+ MN ++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y+ Sbjct: 133 RISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYL 192 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQS 238 +Y ++ + + TN A+ ADG+KTGFT A+G+N+ +A + + Sbjct: 193 YYSKMPSFSYNQRFHRATNLALKMDSTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRR 252 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI ++LG + R +V+ L+++ + D + I Sbjct: 253 LIVIVLGTPNAIKRAEVANKLMNLAYAYTRDEEVI 287 >gi|126739769|ref|ZP_01755460.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6] gi|126719001|gb|EBA15712.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6] Length = 388 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L+ ET Y ++D T V+ D P PAS++KLMT Y+ F L++ + L+ Sbjct: 21 LAAFETGARAAY-VIDQGTDTVLLSKNADQPLPPASMSKLMTLYIAFEALQDGRLTLSEK 79 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQH 137 + +S +A Y S + +++ L+ +IV S ND IAE+L TE F ++ Sbjct: 80 LPVSAHAMSYGGSTMFLDTTDRVGVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARY 139 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++ LG+ F N++G GH + RD+ IL+ R+ DFPQY F K G Sbjct: 140 MTRRAQELGMVNATFANSNGWPAAGHRMSMRDLGILAERLIEDFPQYYPLFSEKEFAFDG 199 Query: 198 KKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + NT N +G +GADG+KTG T +G+ +V SA+QG++ +I VI G Sbjct: 200 RAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQGERRVIFVITG 250 >gi|238913456|ref|ZP_04657293.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHNGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|204929188|ref|ZP_03220331.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321732|gb|EDZ06931.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613672|gb|EFY10612.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620243|gb|EFY17112.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623289|gb|EFY20130.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630494|gb|EFY27263.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632829|gb|EFY29574.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638838|gb|EFY35532.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640341|gb|EFY37000.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647153|gb|EFY43652.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648980|gb|EFY45423.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653886|gb|EFY50210.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660993|gb|EFY57222.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663066|gb|EFY59273.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668511|gb|EFY64666.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673354|gb|EFY69457.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679140|gb|EFY75194.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683235|gb|EFY79250.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685895|gb|EFY81885.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195182|gb|EFZ80363.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198750|gb|EFZ83850.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202394|gb|EFZ87437.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209221|gb|EFZ94157.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209796|gb|EFZ94719.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216122|gb|EGA00852.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220678|gb|EGA05125.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223727|gb|EGA08034.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231333|gb|EGA15447.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232575|gb|EGA16672.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240982|gb|EGA25022.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245599|gb|EGA29594.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247629|gb|EGA31578.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251071|gb|EGA34945.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254840|gb|EGA38635.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263363|gb|EGA46897.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266318|gb|EGA49807.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271462|gb|EGA54884.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +G+N++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGYNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGLQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|83593039|ref|YP_426791.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] gi|83575953|gb|ABC22504.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] Length = 388 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +T V+ + D P P+S++KLMTAY++F LK L ++S+NA Sbjct: 35 VIDLDTDTVLLDKDADVPMPPSSMSKLMTAYMLFERLKSGSLSLDDTFSVSENAWR---K 91 Query: 93 NSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 GSTM L+ + ++ +I++S ND V +AE+L E F MN +K Sbjct: 92 GGAASGGSTMFLNPGAQVKVHDLMRGIIIQSGNDACVVVAENLAGDEATFAAAMNRRAKE 151 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ +HF+NA G+ HY TA D+ +L+ I DFP++ + G N N Sbjct: 152 LGLTNSHFVNATGLPDPEHYMTAHDLVLLAEHIIRDFPEFYEIYGETKFTYNGIVQHNRN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + +GADG+KTG T +GF + ASA+Q + L+ VI G R++ + L+S GF Sbjct: 212 PLLYMNMGADGLKTGHTNIAGFGLTASAVQDGRRLLMVINGLQSNKERSEEAERLMSWGF 271 Query: 265 YN 266 N Sbjct: 272 RN 273 >gi|331085114|ref|ZP_08334200.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407897|gb|EGG87387.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 397 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 130/242 (53%), Gaps = 12/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + PAS+TK+MT ++ +++ K L +T+S+ A+ S Sbjct: 49 LMEASTGKIIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF Sbjct: 109 QVFLEPGEVQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNVRAKGLGMEHTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYPN 202 +N +G+ GH TTA D+A++S + T P+ Y I KG G N Sbjct: 169 VNCNGLDADGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFG--LSN 226 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + A G+KTG T + F I A+A + LIAVI+ A D R K + +LL+ Sbjct: 227 TNKLVRHYPYATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNY 286 Query: 263 GF 264 GF Sbjct: 287 GF 288 >gi|200388770|ref|ZP_03215382.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605868|gb|EDZ04413.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|74095596|emb|CAJ27362.1| strongly similar to penicillin-binding protein 5 precursor [Cronobacter sakazakii] Length = 404 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +TI +A + Sbjct: 50 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDA--WA 107 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MN+ Sbjct: 108 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYV 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 168 TALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTN 227 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 228 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 287 Query: 262 MGF 264 GF Sbjct: 288 WGF 290 >gi|238752594|ref|ZP_04614067.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] gi|238709185|gb|EEQ01430.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] Length = 383 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 29 YVLIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 86 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 87 TGNPEFRGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 146 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 147 NALGLKNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTN 206 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T A+G+N+VASA G LI+ +LG R S L Sbjct: 207 RNGLLWD--TSLNVDGIKTGHTDAAGYNLVASATDGQMRLISTVLGGHTYKGRETESKKL 264 Query: 260 LSMGF 264 L+ GF Sbjct: 265 LTWGF 269 >gi|74312552|ref|YP_310971.1| D-alanyl-D-alanine carboxypeptidase [Shigella sonnei Ss046] gi|73856029|gb|AAZ88736.1| penicillin binding protein 6b [Shigella sonnei Ss046] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+ S I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVFSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|300816637|ref|ZP_07096858.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300530867|gb|EFK51929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] Length = 347 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKGTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|332091585|gb|EGI96666.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 155-74] Length = 301 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 141/287 (49%), Gaps = 23/287 (8%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTL 104 PASLTKLMT YVV + + +T+ ++A + N F K+G +++ Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G + Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 178 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221 ++A D+A+LS I P++ H + K L G N N W + DG+KTG T Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHT 236 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +GFN++AS + G + LIAV++GA R + + LL G N T Sbjct: 237 SGAGFNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283 >gi|238918925|ref|YP_002932439.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri 93-146] gi|238868493|gb|ACR68204.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri 93-146] Length = 387 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 128/248 (51%), Gaps = 16/248 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++A PD NPASLTKLMT YVV L + + L ++I +A + Sbjct: 36 WVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDRVSIGDDA--WA 93 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M T+ + ++ +I+ S ND VA+++ + + FV+ MN Sbjct: 94 TRNPLFKGSSLMFLKPGDHATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNAYV 153 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 L L THF HG+ G Y++ARD+A+L+ I T Y H++ K L G N Sbjct: 154 NALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQNN 213 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSAS 258 N W L DGMKTG T ++GFN+VA+++ Q LIAV++GA R + Sbjct: 214 RNGLLW--DQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREVQAKK 271 Query: 259 LLSMGFYN 266 LL G N Sbjct: 272 LLLWGDRN 279 >gi|168229376|ref|ZP_02654434.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472812|ref|ZP_03078796.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459176|gb|EDX48015.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335852|gb|EDZ22616.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|327482406|gb|AEA85716.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri DSM 4166] Length = 385 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ E+ D PASLTKLMTAY+ +++ + +T+S+ A Sbjct: 39 YMLMDAASGEVLVEHNGDERLPPASLTKLMTAYIATLEIQKGQISDNDMVTVSEKAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + +++D+ L +I++S ND +VA+AE + +E+ F MN+T++ LG+S T Sbjct: 99 GSRMFIQVNTQVSVDDLLHGIIIQSGNDASVAMAEHIAGSEEAFADMMNSTAQRLGMSNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+NA G+ HY++A DMA L+ I + P + + K K PN N + Sbjct: 159 HFVNATGLPHPEHYSSANDMAKLARAIIYEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ + LI+V+ G R + LL+ GF Sbjct: 219 KTVDGLKTGHTEEAGYCLVASAVRDNMRLISVVFGTDSEQARAAETQKLLTYGF 272 >gi|300722312|ref|YP_003711597.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297628814|emb|CBJ89392.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus nematophila ATCC 19061] Length = 402 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 48 YILIDYNSGKILAEKNADVRRDPASLTKMMTSYVIGQAIKSGKIGPNDIVTVGKDA--WA 105 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+A+ + ++ FV MN Sbjct: 106 TGNPIFKGSSLMFLKPGDQVSVAMLSRGINLQSGNDACVAMADYVAGSQDAFVSLMNKYV 165 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 ++LGL THF HG+ +G Y++ARDMA++ + D P ++ K + PN Sbjct: 166 QSLGLQNTHFQTVHGLDANGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTYNNIRQPN 225 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+V+SA +G+ LI+ ++G+ R S LL+ Sbjct: 226 RNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATEGNMRLISAVMGSPTFKGREGDSKKLLT 285 Query: 262 MGF 264 GF Sbjct: 286 WGF 288 >gi|167551002|ref|ZP_02344757.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168242129|ref|ZP_02667061.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168466288|ref|ZP_02700158.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818250|ref|ZP_02830250.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445713|ref|YP_002041329.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448664|ref|YP_002046110.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|207857497|ref|YP_002244148.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194404376|gb|ACF64598.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406968|gb|ACF67187.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631235|gb|EDX49795.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324074|gb|EDZ11913.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338413|gb|EDZ25177.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345154|gb|EDZ31918.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709300|emb|CAR33640.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|158320620|ref|YP_001513127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140819|gb|ABW19131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 386 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 159/299 (53%), Gaps = 18/299 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPA 54 +++F ++I ++++ ++ +I + P+ L+D NTG V+ E PA Sbjct: 2 VKKFKIMICLSLIISLALSTAIVNGDTAPFDINAKSAILIDANTGTVLYEKNIHEKLPPA 61 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT +V + K L +T+S+ AS+ + + G T++ +K + ++ Sbjct: 62 SVTKIMTMLLVMEAIDSNKITLNDKVTVSERASKMGGTQLYLEPGEVKTVEELMKGVAIR 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND ++A+ E + TE+ FVQ MN +K LG++ T F+N +G+ GH TTA D+AI+S Sbjct: 122 SANDASLALGEHIAGTEELFVQEMNRRAKELGMNNTTFVNTNGLPAEGHVTTAYDIAIMS 181 Query: 175 WRIKTDFPQYMHYFQIKGLE--IKGKKYP-----NTNWAVGTFLGADGMKTGFTCASGFN 227 + + +H + ++ + GK+ NTN + ++ GA+G+KTG+T + Sbjct: 182 RELLKH--KSIHKWLTTWMDTVVVGKRQSEQSLVNTNRLINSYQGANGIKTGYTTEALHC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + ASA +G + I+VIL A R +A LL GF N + + KD + N+S Sbjct: 240 LSASATRGGTTFISVILAAPSSQVRFNEAAKLLDYGFAN---YNTVEVVKKDGFVGNIS 295 >gi|16765392|ref|NP_461007.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180641|ref|YP_217058.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990972|ref|ZP_02572071.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168259641|ref|ZP_02681614.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197251570|ref|YP_002147019.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224583442|ref|YP_002637240.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|585694|sp|P37604|DACD_SALTY RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6B; Short=PBP-6B; Flags: Precursor gi|16420593|gb|AAL20966.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128274|gb|AAX65977.1| DD-carboxypeptidase, penicillin-binding protein 6b [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197215273|gb|ACH52670.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205330511|gb|EDZ17275.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350814|gb|EDZ37445.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467969|gb|ACN45799.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247276|emb|CBG25100.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994112|gb|ACY88997.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158623|emb|CBW18134.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913053|dbj|BAJ37027.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224707|gb|EFX49770.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715112|gb|EFZ06683.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130385|gb|ADX17815.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988997|gb|AEF07980.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 390 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|146284089|ref|YP_001174242.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501] gi|145572294|gb|ABP81400.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501] Length = 385 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 130/234 (55%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G V+ E+ D PASLTKLMTAY+ +++ + +T+S+ A Sbjct: 39 YMLMDAASGEVLVEHNGDERLPPASLTKLMTAYIATLEIQKGQISDNDMVTVSEKAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + +++D+ L +I++S ND +VA+AE + +E+ F MN+T++ LG+S T Sbjct: 99 GSRMFIQVNTQVSVDDLLHGIIIQSGNDASVAMAEHIAGSEEAFADMMNSTAQRLGMSNT 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+NA G+ HY++A DMA L+ I + P + + K K PN N + Sbjct: 159 HFVNATGLPHPEHYSSANDMAKLARAIIYEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRD 218 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VASA++ + LI+V+ G R + LL+ GF Sbjct: 219 KTVDGLKTGHTEEAGYCLVASAVRDNMRLISVVFGTDSEQARAAETQKLLTYGF 272 >gi|254477194|ref|ZP_05090580.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11] gi|214031437|gb|EEB72272.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11] Length = 405 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 141/270 (52%), Gaps = 21/270 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A +L ++ + A + +LD T V+ D PAS++KLMT YV F Sbjct: 25 VAAGLLVSVSALSAAAFDTRARAAYVLDQETDTVLLNKNGDLALPPASMSKLMTLYVAFE 84 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--------DNALKLLIVKSANDI 119 +++ + L + +S++A Y KGSTM L ++ L+ +IV S ND Sbjct: 85 AIRDGRLTLDERLPVSEHAMSY--------KGSTMFLNTQDRVRVEDLLRGIIVLSGNDA 136 Query: 120 AVAIAESLCK--TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 V IAE+L TE F ++M ++ +G+ + F N++G GH + +D+AIL+ R+ Sbjct: 137 CVVIAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVQDLAILAERL 196 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 DFP+Y F K E G+ NT N +G +GADG+KTG T +G+ +V SA Q Sbjct: 197 IEDFPEYYPLFAEKRFEFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAKQ 256 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GD+ +I VI G N R + + ++++ F Sbjct: 257 GDRRVIFVITGLDSTNARAEEAEAIVNWSF 286 >gi|170730550|ref|YP_001775983.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12] gi|167965343|gb|ACA12353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12] Length = 347 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 7/237 (2%) Query: 34 LDTNTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKA-----MLTTPITISKNAS 87 +D +G V+A EN H PASLTK+MT+YV+ + +K K M+ T K + Sbjct: 1 MDFASGQVLAGENIHTHL-APASLTKVMTSYVIAAEIKNGKVHRDDQMMMTENAWRKGGA 59 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ Sbjct: 60 GTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGM 119 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N + Sbjct: 120 KNSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLL 179 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 180 WRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGF 236 >gi|218708731|ref|YP_002416352.1| putative Penicillin-binding protein [Vibrio splendidus LGP32] gi|218321750|emb|CAV17705.1| putative Penicillin-binding protein [Vibrio splendidus LGP32] Length = 393 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YVV L+ L + IS+NA Sbjct: 44 FVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVVGQELERGNINLNDDVVISENAWAKN 103 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ ++ + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFIEVGTTVKVEELNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 164 KDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRIYSQKKFTYNGITQYNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 224 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANARKTESKKLLSYGF 281 >gi|197264724|ref|ZP_03164798.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242979|gb|EDY25599.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 390 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVHDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|238795411|ref|ZP_04638926.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] gi|238720530|gb|EEQ12331.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] Length = 383 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 29 YILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 86 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 87 TGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 146 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 147 NALGLQNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYTIYKEKEFTFNNIRQMN 206 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T ++G+N+VASA G LI+ +LG R S L Sbjct: 207 RNGLLWD--TSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRTYKGRETESKKL 264 Query: 260 LSMGF 264 L+ GF Sbjct: 265 LTWGF 269 >gi|205353205|ref|YP_002227006.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272986|emb|CAR37933.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628291|gb|EGE34634.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 390 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|58584548|ref|YP_198121.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418864|gb|AAW70879.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 370 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 3/268 (1%) Query: 8 IAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + + +L + PF S + K +LD + I E+ D +P+S++KLMT YV Sbjct: 7 LVILLLVSTLPFSSYSYQFRTKAKQAVVLDLASDLFIFEHNSDEKMSPSSMSKLMTLYVA 66 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F +LK + +S+ A E S+ K+G ++++ L+ + S ND + +AE Sbjct: 67 FDYLKAGIIDMKDKFRVSRKAWERKGSSMFLKEGQSVSVKELLEGVTTVSGNDACITLAE 126 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E+ FV MN ++NL LS ++F+N+ G H+ +A+D+ +L+ RI TDFP+Y Sbjct: 127 GIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSAKDLVVLAKRIFTDFPEYY 186 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F + L N N + +G DG+KTG+T A G+ IV SA + D+ + AV+ G Sbjct: 187 DLFSKQYLTYNDIIQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVISAKRNDRRIFAVVNG 246 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 R + + L+ F N + KKI Sbjct: 247 LNTEKERIEEAKRLIQYSF-NHFNTKKI 273 >gi|254511090|ref|ZP_05123157.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium KLH11] gi|221534801|gb|EEE37789.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium KLH11] Length = 389 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D P PAS++KLMT YV F L++ + L + +S++A Y S Sbjct: 34 VIDQKTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDETLPVSEHAMSYGGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND V IAE+L +E F + M ++ +G++ + Sbjct: 94 TMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGSEAGFARFMTQRAQQMGMNDS 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 +F N++G GH + D+A+L+ R+ TDFP+Y F + E G+ N+ N + Sbjct: 154 NFANSNGWPAAGHMMSVHDLAVLADRLITDFPEYYPLFAEEEFEFDGRAPSNSRNRNPLL 213 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +GADG+KTG T +G+ +V SA QGD+ ++ V+ G R + + ++++ F N Sbjct: 214 KLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVVFVLSGLDSVGKRAEEAEAVVNWSFRNF 273 Query: 268 TDR 270 +R Sbjct: 274 VER 276 >gi|262173532|ref|ZP_06041209.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] gi|261890890|gb|EEY36877.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] Length = 378 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG ++ E NPASLTKLMTAYV +K + IS NA + Sbjct: 29 YVLIDYHTGKILVERNAHQKLNPASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKK 88 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + L + + LIV+S ND +VAIAE + +E FV MN+ ++ LG+ Sbjct: 89 FPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGM 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ Y+T D+A+L I D P+ + G N N + Sbjct: 149 NNSSFANPHGLDNSNLYSTPYDIALLGQAIIRDLPEIYPLYSELSFTYNGITQHNRNGLL 208 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA G+ LI+V++G+ R S LLS GF Sbjct: 209 RDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKIREAESKQLLSYGF 266 >gi|21232885|ref|NP_638802.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767044|ref|YP_241806.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. 8004] gi|188990136|ref|YP_001902146.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas campestris pv. campestris str. B100] gi|21114716|gb|AAM42726.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572376|gb|AAY47786.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. 8004] gi|167731896|emb|CAP50080.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas campestris pv. campestris] Length = 403 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 54 WILMDYATGQVLAGENIHQELAPASITKVMTSYVVAAEIKNGKISRDDQVMMSERAWREG 113 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + + Sbjct: 114 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKI 173 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K N N Sbjct: 174 GMKNSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRNL 233 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+ GF Sbjct: 234 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDTSERQRADDSLALLNWGF 292 >gi|320086495|emb|CBY96266.1| DD-carboxypeptidase, penicillin-binding protein 6B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 390 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDHAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N K ++I Y K DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +KE+ Sbjct: 337 RKEL 340 >gi|88800720|ref|ZP_01116279.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297] gi|88776584|gb|EAR07800.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297] Length = 394 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 4/251 (1%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + A Y L+D TG V+ + PASLTKLMT+Y+ + E + LT Sbjct: 30 PIIPAAPQLAATSYILMDAETGQVLVAHNEHEQMPPASLTKLMTSYIAEREILEGRLELT 89 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +SK A + P S + G +T+++ L+ +I+ S ND +VA+AE + TE F Q Sbjct: 90 DETLVSKKAWQMPGSRMFIEVGDLVTIEDLLRGVIIVSGNDASVALAEHIAGTEDLFAQL 149 Query: 138 MNNTSKNLGLSATHFMNAHGV-VQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN ++NLG+ THF NA G+ ++G HY++A D+A+LS + D ++ + + + Sbjct: 150 MNKYAENLGMINTHFSNASGLPPENGQEHYSSAYDLALLSQALIYDNAEFYPLYAERSFK 209 Query: 195 IKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 PN N +GT DG+KTG T +G+ + ASA + LI+V++G + R Sbjct: 210 YGPVSAQPNRNRLLGTNPDVDGLKTGHTEEAGYCLAASAERDGMRLISVVMGTRSEDARA 269 Query: 254 KVSASLLSMGF 264 + + LL+ GF Sbjct: 270 QETQKLLTYGF 280 >gi|17942531|pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 At 2.3 A Resolution gi|28374028|pdb|1NJ4|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 At 1.9 A Resolution gi|61679891|pdb|1SDN|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 Modified By Mercury Length = 363 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 20 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 77 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 78 TGNPVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 137 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 138 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 197 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 198 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 257 Query: 262 MGF 264 GF Sbjct: 258 WGF 260 >gi|332971504|gb|EGK10454.1| serine-type D-Ala-D-Ala carboxypeptidase [Kingella kingae ATCC 23330] Length = 432 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 127/236 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +G ++A+ D PASLTK+MTAY+VF L+ KK S++A Sbjct: 85 YLVQDLQSGQILAQANADQKIEPASLTKVMTAYLVFQALENKKITPDQTTKTSEHAWRQA 144 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +++ + + L+V+ AND AV++AE L +E +FV MN +K LG++ T Sbjct: 145 GSRMFLELGKPVSVQDLVHGLVVQLANDAAVSLAELLAGSEAEFVALMNAEAKRLGMTNT 204 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF NA G+ H TT +D+AILS + DFPQY + K N N + Sbjct: 205 HFDNATGLSSQTHLTTVKDLAILSNALIRDFPQYYKIYSTKSFTYNTITQQNRNLLLFRD 264 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+ G+T + G+N++AS+ + + +++++ GA +R S+ LL+ N Sbjct: 265 DNIDGLAAGYTNSGGYNLIASSKRDGRRVLSIVAGAASAESRATESSKLLNYALLN 320 >gi|239831909|ref|ZP_04680238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824176|gb|EEQ95744.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 426 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ + PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 55 WVVFDADSGRILGQDDANIQHAPASLAKMMTLYLAFEALKTGRLHWDDAMPISKNAASKV 114 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T+T+ +A+ +IV SAND A + E + +E F + M ++ +G+ +T Sbjct: 115 RMKLWLKPGETITVHDAIYGMIVISANDAATVMGEYMAGSEAAFGRLMTQRARQIGMKST 174 Query: 151 HFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F+N G+ TTARDMAIL ++ DFP+ F + + + N + Sbjct: 175 FFVNPSGLTAKATQLTTARDMAILGMSLRRDFPEQYALFSTRSFTFRNRVLNGHNTLMYR 234 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SAI D+ L+ V+LGA R+ A LL+ Sbjct: 235 YQGVDGIKTGYTDVSGYNLVSSAIINDKHLVGVVLGAGSARQRDDQMAKLLT 286 >gi|254284899|ref|ZP_04959865.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|150424902|gb|EDN16679.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] Length = 389 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVA 230 +L + D P+ + G N N + + DGMKTG+T +G+++ + Sbjct: 184 LLGRAMIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ +R S LLS GF Sbjct: 244 SATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 277 >gi|156934847|ref|YP_001438763.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter sakazakii ATCC BAA-894] gi|156533101|gb|ABU77927.1| hypothetical protein ESA_02695 [Cronobacter sakazakii ATCC BAA-894] Length = 428 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +TI +A + Sbjct: 74 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ + ++ FV MN+ Sbjct: 132 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYV 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 192 TALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTN 251 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 252 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 311 Query: 262 MGF 264 GF Sbjct: 312 WGF 314 >gi|145298088|ref|YP_001140929.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850860|gb|ABO89181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] Length = 396 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 127/241 (52%), Gaps = 9/241 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D PASLTK+MT+Y++ L E T +TISKNA Sbjct: 45 HILIDYYSGQVLAEANADERLPPASLTKMMTSYIIGHELLEGNIKNTDMVTISKNAWSKN 104 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y S+ F + G +++D+ K +I++S ND VA+AE L + F MN S LG+ Sbjct: 105 YTDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNAWSAKLGM 164 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T F N HG+ + GHY+TARDMA L + D P+ + K G N N Sbjct: 165 KDTQFKNPHGLDEEGHYSTARDMARLGQALIHDQPEEYKIYAQKSFVFNGITQHNRNRLL 224 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMG 263 W L DG+KTG G+N+V+SA + LIAV+LGA +R S LL+ G Sbjct: 225 W--DQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSEGSRAAESKKLLTYG 282 Query: 264 F 264 F Sbjct: 283 F 283 >gi|42543137|pdb|1NZO|A Chain A, The Crystal Structure Of Wild Type Penicillin-Binding Protein 5 From E. Coli gi|46014978|pdb|1NZU|A Chain A, Wild-Type Penicillin-Binding Protein 5 From E. Coli Modified By Beta-Mercaptoethanol gi|71042191|pdb|1Z6F|A Chain A, Crystal Structure Of Penicillin-Binding Protein 5 From E. Coli In Complex With A Boronic Acid Inhibitor gi|197305030|pdb|3BEB|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5 In Complex With A Peptide-Mimetic Penicillin gi|197305031|pdb|3BEC|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5 In Complex With A Peptide-Mimetic Cephalosporin gi|326327867|pdb|3MZD|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli: Cloxacillin Acyl-Enzyme Complex gi|326327868|pdb|3MZE|A Chain A, Structure Of Penicillin-Binding Protein 5 From E.Coli: Cefoxitin Acyl- Enzyme Complex gi|326327869|pdb|3MZF|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli: Imipenem Acyl- Enzyme Complex Length = 363 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 20 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 77 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 78 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 137 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 138 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 197 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 198 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 257 Query: 262 MGF 264 GF Sbjct: 258 WGF 260 >gi|157146752|ref|YP_001454071.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter koseri ATCC BAA-895] gi|157083957|gb|ABV13635.1| hypothetical protein CKO_02526 [Citrobacter koseri ATCC BAA-895] Length = 403 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|295096612|emb|CBK85702.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL +HF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 SALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|163732221|ref|ZP_02139667.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149] gi|161394519|gb|EDQ18842.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149] Length = 389 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 9/241 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----LTTPITISKNASE 88 ++D TG V+ D P PAS++KLMT Y+ F ++ KA L + +S++A Sbjct: 30 VMDQTTGTVLLNKNADAPLPPASMSKLMTLYMAFEAVRRGKADGGLDLNELLPVSEHAQS 89 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLG 146 Y S+ + G T+++++ L+ +IV S ND V IAE+L TE F + M ++ LG Sbjct: 90 YGGSSMFLRSGETVSVEDLLRGIIVVSGNDACVVIAEALSPDGTEYGFARMMTQRAQQLG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT--- 203 ++ + F+NA G Q GH + RD+AIL+ R+ TDFP++ F + N+ Sbjct: 150 MNNSTFINASGWPQTGHVMSMRDLAILADRLITDFPEFYPMFAETEFPFDNRVPSNSRNR 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + +GADG+KTG T +G+ +V SA QGD+ +I VI G R + S ++++ Sbjct: 210 NPVLTMGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVITGLETTAARAQESQAIVNWA 269 Query: 264 F 264 F Sbjct: 270 F 270 >gi|300947320|ref|ZP_07161521.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300453072|gb|EFK16692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDALGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAVI+GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|226323183|ref|ZP_03798701.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758] gi|225208373|gb|EEG90727.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758] Length = 425 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 135/258 (52%), Gaps = 15/258 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ + G V+ E D PAS+TK+MT ++F L + T +T S+ A+ S Sbjct: 77 IMEASGGQVLLEKNADEKKPPASVTKVMTLLLIFDALADGTITPDTEVTTSEYAASMGGS 136 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+D +K + V SAND VA+AE + +E FV+ MN S LG++ THF Sbjct: 137 QVFLEAGEKQTVDTMIKCIAVASANDACVAMAEKIAGSEPAFVEKMNQRSAGLGMTNTHF 196 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYPN 202 +N +G+ GH TTARD+A++S + T +PQ Y I KG G N Sbjct: 197 VNCNGLDTEGHLTTARDIALMSRELITKYPQIEDYSTIWMENITHTTAKGSSEFG--LSN 254 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + A G+KTG T + F + A+A + ++IAV++ D TR K + ++L+ Sbjct: 255 TNKLIRQYEYATGLKTGSTSGAKFCLSATARKDGVNMIAVVMAEPDSKTRIKDAIAMLNY 314 Query: 263 GFYNKT---DRKKINYII 277 GF + D K + I+ Sbjct: 315 GFGKCSIYQDEKALEKIV 332 >gi|283834062|ref|ZP_06353803.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291070205|gb|EFE08314.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|212712937|ref|ZP_03321065.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM 30120] gi|212684415|gb|EEB43943.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM 30120] Length = 409 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 139/275 (50%), Gaps = 20/275 (7%) Query: 6 VIIAMAMLSNI---FPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +I++ A +N FP SI + Y L+D N+G V+AE+ D +PASLTK+M Sbjct: 25 LIVSTANFANADEAFPNTSIPAVPDIDAAAYILIDYNSGKVLAESNADQRRDPASLTKMM 84 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI-------- 112 T+YV+ +K K +T+ +A + N FK S M L ++ + Sbjct: 85 TSYVIGQAIKSGKIGANDMVTVGDDA--WATGNPIFKGSSLMFLKPGDRVSVSQLTRGIN 142 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ + + FV MN LGL THF HG+ G Y++ARDMA+ Sbjct: 143 LQSGNDACVAMADYVAGDQANFVNLMNTYVTKLGLQNTHFQTVHGLDAAGQYSSARDMAL 202 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIV 229 + + D P+ ++ K + N N W L DG+KTG T A+G+N+V Sbjct: 203 IGQALIRDVPEEYEIYKEKEFTFNNIRQTNRNGLLW--DKSLAVDGIKTGHTDAAGYNLV 260 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ASA GD LI+V++G R+ S LL+ GF Sbjct: 261 ASAKDGDMRLISVVMGGKSSKGRDAESKKLLTYGF 295 >gi|325577705|ref|ZP_08147980.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus parainfluenzae ATCC 33392] gi|325160450|gb|EGC72576.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus parainfluenzae ATCC 33392] Length = 395 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 131/254 (51%), Gaps = 10/254 (3%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++I E N Y L+D N+G V+A PD PASLTK+MT+YVV + LK+ K Sbjct: 33 IAIPEVNA-QTYVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGAALKQGKIHNEDM 91 Query: 80 ITISKNA--SEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +TIS++A +P S+ F +++ + K +I+ S ND VA+AE + T FV Sbjct: 92 VTISESAWGRNFPDSSKMFLNLNQQVSVGDLNKGIIIVSGNDACVAVAEHISGTVANFVD 151 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN + GL T+F HG+ Y+TARDMAI+ I D P+ + K Sbjct: 152 TMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAIIGAHIIRDLPEEYKIYAEKDFTFN 211 Query: 197 GKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTR 252 K PN N W + DGMKTG T +G+N+VASA + LI+V++G R Sbjct: 212 KIKQPNRNGLLWD--KTINVDGMKTGHTSQAGYNLVASATSPNNMRLISVVMGVPTYKGR 269 Query: 253 NKVSASLLSMGFYN 266 S LL GF N Sbjct: 270 EVESKKLLQWGFAN 283 >gi|190571728|ref|YP_001976086.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190358000|emb|CAQ55464.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 368 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 2/236 (0%) Query: 12 MLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 +L IFPF S + K +LD + I E+ P+S++KLMT YV F +L Sbjct: 9 LLIFIFPFYSYSYQFRTKAKQAIVLDLASDSFIFEHNSREKMAPSSMSKLMTLYVAFDYL 68 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K + +S+ A E S+ K+G +T+ L+ + + S ND +A+AE + Sbjct: 69 KAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDACIALAEGIAG 128 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI TDFP+Y F Sbjct: 129 SEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFTDFPEYYDLFS 188 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + L N N + +G DG+KTG T A G+ I+ SA + D+ + AV+ G Sbjct: 189 EQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRIFAVVNG 244 >gi|119477453|ref|ZP_01617644.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2143] gi|119449379|gb|EAW30618.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2143] Length = 384 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 6/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G VI E D PASLTKLMT+YV+ L E T +TIS+NA Sbjct: 35 YILIDADSGRVITEKNADEKLPPASLTKLMTSYVLSYELAEGNVANTDMVTISENAWAQN 94 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P+ + + G + L + K +++ S ND +VA+AE L +E F MN + L Sbjct: 95 PTFAGSSLMWIEVGKQVNLKDLHKGVVISSGNDASVAVAEHLAGSESAFADVMNQHAALL 154 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ +HF+NAHG+ HY TARD+AILS I +P+ + N N Sbjct: 155 GMTGSHFVNAHGLPDPEHYMTARDLAILSKAI-LKYPEEYALYSQPDYTYNNITQTNRNR 213 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +GF +V+SA + LI+V++GA ++ R S LLS GF Sbjct: 214 LLWKDDSVDGLKTGHTEEAGFCLVSSAKRNGMRLISVVMGAKSQSAREVESQKLLSYGF 272 >gi|84394380|ref|ZP_00993099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] gi|84374982|gb|EAP91910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] Length = 393 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YV+ L+ L + IS+NA Sbjct: 44 FVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVIGQELERGNINLNDDVVISENAWAKN 103 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ ++ + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFIEVGTTVKVEELNRGIIIQSGNDATVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 164 KDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRIYSEKKFTYNGITQYNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS GF Sbjct: 224 W--DKSMNVDGIKTGHTSKAGYSLVSSATEGKMRLVAVVMGTKNANARKTESKKLLSYGF 281 >gi|82777459|ref|YP_403808.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197] gi|81241607|gb|ABB62317.1| penicillin binding protein 6b [Shigella dysenteriae Sd197] Length = 378 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 29 WVLMDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 86 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN Sbjct: 87 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYV 146 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 147 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 206 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 207 RNGLLWD--KTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKL 264 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 265 LRWGQQNFT 273 >gi|260773924|ref|ZP_05882839.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] gi|260610885|gb|EEX36089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] Length = 388 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 139/276 (50%), Gaps = 12/276 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 M+ I+ A + P +S A +P Y L+D +TG V+ E+ + N Sbjct: 1 MKNIKSIVVSATCLSFIPLVSDATPIVVPNPPQLSAKGYVLMDYHTGTVLVEHNAHNKLN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALK 109 PASLTKLMT+YV +K + IS+ A +P S+ F + G+ + + + + Sbjct: 61 PASLTKLMTSYVAGQEMKRGNISPDDQVVISQRAWARNFPDSSKMFIEVGTKVNMMDLYR 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LIV+S ND +VAIAE + +E FV MN+ + LGL+ T F N HG+ G Y+T D Sbjct: 121 GLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAATLGLTNTAFTNPHGLDSSGLYSTPYD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L+ I D P+ + G N N + + DGMKTGFT +GF++ Sbjct: 181 IAKLAQAIIRDLPEIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGFSL 240 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA G+ LI+V++G+ R S LLS GF Sbjct: 241 TTSATNGNMRLISVVMGSNSAKGREADSKQLLSYGF 276 >gi|300926504|ref|ZP_07142297.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300417465|gb|EFK00776.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G LIAVI+GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|332094304|gb|EGI99355.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVYQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|300930715|ref|ZP_07146093.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|301330462|ref|ZP_07223080.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|300461436|gb|EFK24929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300843583|gb|EFK71343.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|332092389|gb|EGI97462.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella boydii 5216-82] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|330505013|ref|YP_004381882.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina NK-01] gi|328919299|gb|AEB60130.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina NK-01] Length = 391 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 11/242 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G+V+ EN D PASLTKLMTAY+ ++ K +TIS++A Sbjct: 40 YVLMDAASGNVLVENNADQRLPPASLTKLMTAYIATLEIRNGKIGEQDLVTISEHAWR-- 97 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + GSTM T+D+ L +I++S ND ++AIAE + +E F MN T+ Sbjct: 98 -TGGAASGGSTMFLPLNSQATVDDLLHGIIIQSGNDASIAIAEYIAGSEDAFADMMNATA 156 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ +HFMNA G+ HY++A DMAIL+ I + ++ + K K PN Sbjct: 157 ERLGMKNSHFMNATGLPHPEHYSSAHDMAILARAIINEDAEHYAIYSQKEFLWNNIKQPN 216 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DG+KTG T +G+ +VASA++ +I + G R + LL+ Sbjct: 217 RNLLLWRDRTVDGLKTGHTSEAGYCLVASAVRDGARMITSVFGTDSEQARAAETQKLLTY 276 Query: 263 GF 264 GF Sbjct: 277 GF 278 >gi|296103402|ref|YP_003613548.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057861|gb|ADF62599.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL +HF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 SALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQTN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|300935769|ref|ZP_07150733.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300974063|ref|ZP_07172437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300308960|gb|EFJ63480.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300459040|gb|EFK22533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|315285607|gb|EFU45049.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|324015750|gb|EGB84969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|300898616|ref|ZP_07116943.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300956273|ref|ZP_07168579.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|405953|gb|AAA16416.1| yeeC [Escherichia coli] gi|300316896|gb|EFJ66680.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300357712|gb|EFJ73582.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|320175126|gb|EFW50238.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] gi|320185393|gb|EFW60163.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83] gi|332097731|gb|EGJ02705.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|253990639|ref|YP_003041995.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782089|emb|CAQ85253.1| penicillin-binding protein 5 precursor [Photorhabdus asymbiotica] Length = 428 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 129/243 (53%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ +A + Sbjct: 74 YILIDYNSGKVLAEMNADSHRDPASLTKMMTSYVIGQAIKSGKIGPNDMVTVGTDA--WA 131 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+A+ + +++ FV MN Sbjct: 132 TGNPVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAGSQESFVNLMNGYV 191 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K+LGL T+F HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 192 KSLGLQNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAIYKEKEFTYNNIRQTN 251 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T A+G+N+VASA +GD LI+ +LG R S LL+ Sbjct: 252 RNGLLWDKSLNVDGIKTGHTNAAGYNLVASATEGDMRLISAVLGGHTYKGRETESKKLLT 311 Query: 262 MGF 264 GF Sbjct: 312 WGF 314 >gi|83648479|ref|YP_436914.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] gi|83636522|gb|ABC32489.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] Length = 386 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 126/234 (53%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G +I E + PASLTK+MT+YV+ + + IS A + Sbjct: 40 YILMDAESGAIIVEKNSEERLPPASLTKMMTSYVLDYEVDQGNVSFNDEAPISVKAWKTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+++ L + LK +I++S ND +VA+AE L +E F MN ++ LG+S T Sbjct: 100 GSKMFVREGTSVRLGDLLKGIIIQSGNDASVAVAEFLAGSEDAFASMMNQHAQRLGMSNT 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F NA G+ HY++A D+A L+ I DFP + K + PN N + Sbjct: 160 NFANATGLPSENHYSSAHDLAKLAKAIINDFPNQYPLYSEKYFTYNNIRQPNRNLLLWRD 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +V+SA++ LI+V++GA R + + LL+ GF Sbjct: 220 KSVDGLKTGHTEEAGYCLVSSAVRDGMRLISVVMGAKSEEARARETLKLLNYGF 273 >gi|71274450|ref|ZP_00650738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon] gi|71900446|ref|ZP_00682578.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] gi|71164182|gb|EAO13896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon] gi|71729811|gb|EAO31910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] Length = 347 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 136/237 (57%), Gaps = 7/237 (2%) Query: 34 LDTNTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-----S 87 +D +G V+A EN H PASLTK+MT+YV+ + +K K + +++NA + Sbjct: 1 MDFASGQVLAGENIHTHL-APASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGA 59 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ Sbjct: 60 GTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGM 119 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N + Sbjct: 120 KNSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLL 179 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 180 WRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGF 236 >gi|322833903|ref|YP_004213930.1| Beta-lactamase [Rahnella sp. Y9602] gi|321169104|gb|ADW74803.1| Beta-lactamase [Rahnella sp. Y9602] Length = 402 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 48 YILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQSIKAGKISPTDIVTVGPDA--WA 105 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ +I++S ND VA+A+ + ++ FV MNN Sbjct: 106 TGNPVFKGSSLMFLKPGDRVPVSELNRGIILQSGNDACVAMADHVAGSQDAFVAIMNNYV 165 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 +LGL THF HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 166 NSLGLKNTHFGTVHGLDAAGQYSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQMN 225 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T ++G+N+VASA +G LI+ ++G R S L Sbjct: 226 RNGLLWD--NSLNVDGIKTGHTDSAGYNLVASATEGQMRLISAVMGGHTYKGREVESKKL 283 Query: 260 LSMGF 264 L+ GF Sbjct: 284 LTWGF 288 >gi|258623181|ref|ZP_05718190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] gi|258625506|ref|ZP_05720398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258582212|gb|EEW07069.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258584479|gb|EEW09219.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] Length = 413 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 142/273 (52%), Gaps = 11/273 (4%) Query: 3 QFLVIIAMAMLSNI--FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 +FL ++MA ++ + F ++ T + P Y L+D +TG ++ E NPAS Sbjct: 29 KFLFRLSMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPAS 88 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLI 112 LTKLMTAYV +K + IS NA ++P S+ F + GS + L + + LI Sbjct: 89 LTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 148 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 149 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIAL 208 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P + G N N + + DGMKTG+T +G+++ +S Sbjct: 209 LGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 268 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A G+ LI+V++G+ R S LLS GF Sbjct: 269 ATSGEMRLISVVMGSKSVKIREAESKQLLSYGF 301 >gi|312171895|emb|CBX80152.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora ATCC BAA-2158] Length = 402 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+ V+AE D +PASLTK+M++YV+ LK K +T+ K+A + Sbjct: 44 WILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDVVTVGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MN+ Sbjct: 102 TGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNHYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ +G Y+TARDMA++ + D P + K + N Sbjct: 162 QALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAFTFNKIRQHN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R + S L Sbjct: 222 RNRLLWS--TNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAVRFRESEKL 279 Query: 260 LSMGFYN 266 L G N Sbjct: 280 LIWGLRN 286 >gi|225629999|ref|YP_002726790.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi] gi|225591980|gb|ACN94999.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi] Length = 368 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 119/214 (55%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +LD + I ++ D P+S++KLMT Y+ F +LK + +S+ A E Sbjct: 31 VVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERKG 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K+G +T+ L+ + + S ND + +AE + +E+ FV MN ++NL L+ +H Sbjct: 91 SSMFLKEGQFVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSH 150 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+N+ G H+ +A+D+ +L+ RI TDFP+Y F + L N N + + Sbjct: 151 FVNSSGWPDGDHFMSAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDI 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G DG+KTG+T A G+ IVASA + D+ + AV+ G Sbjct: 211 GVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNG 244 >gi|193063321|ref|ZP_03044411.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|192930905|gb|EDV83509.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|24112068|ref|NP_706578.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 2a str. 301] gi|30062179|ref|NP_836350.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 2a str. 2457T] gi|82543078|ref|YP_407025.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii Sb227] gi|24050895|gb|AAN42285.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] gi|30040424|gb|AAP16156.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 2457T] gi|81244489|gb|ABB65197.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella boydii Sb227] gi|313649723|gb|EFS14147.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str. 2457T] gi|332760998|gb|EGJ91286.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 4343-70] gi|332763369|gb|EGJ93609.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671] gi|332768266|gb|EGJ98451.1| penicillin-binding protein 6 [Shigella flexneri 2930-71] gi|333007457|gb|EGK26937.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri VA-6] gi|333007869|gb|EGK27345.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218] gi|333010043|gb|EGK29478.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-272] gi|333020876|gb|EGK40136.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-227] gi|333021546|gb|EGK40796.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304] Length = 403 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|269960275|ref|ZP_06174649.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834886|gb|EEZ88971.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 388 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 38 YVLMDFQSGAIIAEQNARAGLAPASLTKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAK 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T+ N ++ +I++S ND VA+AE + +E FV MN + L L Sbjct: 98 FPDSSKMFIQPKDEITVANLMRGVIIQSGNDACVALAEHVAGSEGAFVALMNGWADKLSL 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA 206 + T+F+N+HG+ G T+ DMA L I D P+ + K + K +Y Sbjct: 158 NDTYFVNSHGLDSEGIQTSPNDMATLMQSIINDVPEVYALYSEKVFKWNKITQYNRNKLL 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG KTG+T +G+++V+SA QG LI+V++G + +R S +LLS GF Sbjct: 218 WDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMRLISVVMGTPSKQSRISQSKNLLSYGF 275 >gi|294637039|ref|ZP_06715354.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291089736|gb|EFE22297.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 399 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++G V+ E D +PASLTK+M +YV+ LK K + + K+A + Sbjct: 41 YILLDYDSGRVLTEGNADQRLDPASLTKIMASYVIGQALKSGKIAPGDMVVVGKDA--WA 98 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN Sbjct: 99 TGNPVLRGSSLMFLKPGDRVPVSELNRGVVIQSGNDASIALADHVAGSQDAFVNLMNKYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 ++ GL THF HG+ G Y++ARDMA++S + D P + K + N Sbjct: 159 ESWGLKNTHFRTVHGLDSAGQYSSARDMALISQHLIADVPDEYQLNKEKEFTFNNIRQTN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTGFT +G N+VASA G LI+V+LGA R + S L Sbjct: 219 RNRLLWD--TSLNVDGVKTGFTNGAGHNLVASATDGPMRLISVVLGAPSDRVRFEESKKL 276 Query: 260 LSMGF 264 L+ GF Sbjct: 277 LTWGF 281 >gi|320175602|gb|EFW50695.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] Length = 347 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|300824757|ref|ZP_07104862.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300920250|ref|ZP_07136696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|301018907|ref|ZP_07183137.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|299882461|gb|EFI90672.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|300412752|gb|EFJ96062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300522744|gb|EFK43813.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|323172598|gb|EFZ58232.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli LT-68] Length = 347 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|300903877|ref|ZP_07121778.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|301307141|ref|ZP_07213170.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300404135|gb|EFJ87673.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300837656|gb|EFK65416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|315253360|gb|EFU33328.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] Length = 347 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|238785719|ref|ZP_04629693.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] gi|238713359|gb|EEQ05397.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] Length = 383 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 124/245 (50%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 29 YILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDA--WA 86 Query: 91 PSNSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ + K S ND VA+A+ + ++ FV MNN Sbjct: 87 TGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYV 146 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL T F HG+ G Y++ARDMA++ + D P ++ K + N Sbjct: 147 NALGLKNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMN 206 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T ++G+N+VASA G LI+ +LG R S L Sbjct: 207 RNGLLWD--TSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRTYKGRETESKKL 264 Query: 260 LSMGF 264 L+ GF Sbjct: 265 LTWGF 269 >gi|117624214|ref|YP_853127.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli APEC O1] gi|301019170|ref|ZP_07183370.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301050040|ref|ZP_07196954.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301648516|ref|ZP_07248240.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|309797269|ref|ZP_07691664.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|331658091|ref|ZP_08359053.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA206] gi|115513338|gb|ABJ01413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli APEC O1] gi|300298224|gb|EFJ54609.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300399363|gb|EFJ82901.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301073419|gb|EFK88225.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|308119144|gb|EFO56406.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|320198701|gb|EFW73301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|323183797|gb|EFZ69188.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1357] gi|323951763|gb|EGB47637.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323972841|gb|EGB68040.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|324008953|gb|EGB78172.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|326338366|gb|EGD62194.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|326347113|gb|EGD70846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|331056339|gb|EGI28348.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA206] Length = 347 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|237730616|ref|ZP_04561097.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp. 30_2] gi|226906155|gb|EEH92073.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp. 30_2] Length = 403 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|47779364|gb|AAT38593.1| predicted penicillin-binding protein 6 precursor [uncultured gamma proteobacterium eBACHOT4E07] Length = 382 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 145/268 (54%), Gaps = 5/268 (1%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+Q FL ++ ++ + F+ A L Y L++ +T VIAE+ PAS+TK+ Sbjct: 1 MKQIFLFLLCVSNIVVGQSFVPNAPELNLKSYMLIEPDTNTVIAESNASGLIEPASMTKV 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAYVV +K L + IS+ A S + G +++ + LK +I++S ND Sbjct: 61 MTAYVVADQIKNDLISLDDSVLISEKAWRMGGSKMFIEVGKRVSILDLLKGIIIQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + TE FV MN+ + LG++ T F+N+ G+ GH T+ARD+A L+ T Sbjct: 121 SVAIAEYVGGTEAGFVDLMNSYAGALGMADTTFINSTGLPNEGHLTSARDLATLTSNFMT 180 Query: 180 DFPQYMHYFQIKGLE---IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +FP F+ K E I G KY N N + +DG+KTG T ++G+ ++ SA +G+ Sbjct: 181 NFPDIYALFKEKEFEYGGITGNKY-NRNKLLWRDESSDGVKTGHTSSAGYCLIGSAKRGN 239 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 LI V+ G+ N + LL GF Sbjct: 240 MRLITVVAGSDTANNSFSDTQRLLEYGF 267 >gi|15800346|ref|NP_286358.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 EDL933] gi|16128615|ref|NP_415165.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. MG1655] gi|26246612|ref|NP_752652.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli CFT073] gi|74311168|ref|YP_309587.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei Ss046] gi|82775901|ref|YP_402248.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella dysenteriae Sd197] gi|89107501|ref|AP_001281.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|91209679|ref|YP_539665.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UTI89] gi|110640861|ref|YP_668589.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 536] gi|117622848|ref|YP_851761.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli APEC O1] gi|157159257|ref|YP_001461799.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli E24377A] gi|168770236|ref|ZP_02795243.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|168778083|ref|ZP_02803090.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|168779124|ref|ZP_02804131.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|168786481|ref|ZP_02811488.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|170080211|ref|YP_001729531.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170080312|ref|YP_001729632.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170683720|ref|YP_001742748.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli SMS-3-5] gi|188495416|ref|ZP_03002686.1| penicillin-binding protein 5 [Escherichia coli 53638] gi|191167358|ref|ZP_03029174.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|191172298|ref|ZP_03033840.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|194437465|ref|ZP_03069562.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|208808249|ref|ZP_03250586.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208815700|ref|ZP_03256879.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208823277|ref|ZP_03263595.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209398518|ref|YP_002269267.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209917890|ref|YP_002291974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli SE11] gi|215485672|ref|YP_002328103.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O127:H6 str. E2348/69] gi|217326125|ref|ZP_03442209.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|218553174|ref|YP_002386087.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli IAI1] gi|218557570|ref|YP_002390483.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli S88] gi|218688455|ref|YP_002396667.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli ED1a] gi|218694072|ref|YP_002401739.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 55989] gi|218699004|ref|YP_002406633.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli IAI39] gi|218703966|ref|YP_002411485.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UMN026] gi|227884389|ref|ZP_04002194.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972] gi|237707395|ref|ZP_04537876.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp. 3_2_53FAA] gi|238899909|ref|YP_002925705.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BW2952] gi|253774382|ref|YP_003037213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160714|ref|YP_003043822.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B str. REL606] gi|254791798|ref|YP_003076635.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. TW14359] gi|256020584|ref|ZP_05434449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|260842858|ref|YP_003220636.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|260853884|ref|YP_003227775.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|260866780|ref|YP_003233182.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|261224099|ref|ZP_05938380.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. FRIK2000] gi|261257793|ref|ZP_05950326.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. FRIK966] gi|291281583|ref|YP_003498401.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia coli O55:H7 str. CB9615] gi|293403894|ref|ZP_06647888.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1412] gi|293408757|ref|ZP_06652596.1| conserved hypothetical protein [Escherichia coli B354] gi|293413928|ref|ZP_06656577.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B185] gi|293418743|ref|ZP_06661178.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B088] gi|297519791|ref|ZP_06938177.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli OP50] gi|298379670|ref|ZP_06989275.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1302] gi|300817851|ref|ZP_07098065.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300823054|ref|ZP_07103188.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300901139|ref|ZP_07119246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300907806|ref|ZP_07125423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300920556|ref|ZP_07136981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300927270|ref|ZP_07142998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300931564|ref|ZP_07146878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300937897|ref|ZP_07152688.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300990039|ref|ZP_07179081.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300996738|ref|ZP_07181525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|301025238|ref|ZP_07188805.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301049826|ref|ZP_07196766.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301302111|ref|ZP_07208244.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|301329153|ref|ZP_07222150.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|306812936|ref|ZP_07447129.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli NC101] gi|307312652|ref|ZP_07592284.1| Beta-lactamase [Escherichia coli W] gi|309785937|ref|ZP_07680566.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|309795501|ref|ZP_07689918.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|312965077|ref|ZP_07779314.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312970712|ref|ZP_07784893.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|331645789|ref|ZP_08346892.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605] gi|331651643|ref|ZP_08352662.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718] gi|331656658|ref|ZP_08357620.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206] gi|331676290|ref|ZP_08377002.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591] gi|331682055|ref|ZP_08382679.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299] gi|332281770|ref|ZP_08394183.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|83288470|sp|P0AEB4|DACA_ECO57 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|83288471|sp|P0AEB3|DACA_ECOL6 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|83288472|sp|P0AEB2|DACA_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Beta-lactamase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|12513533|gb|AAG54966.1|AE005242_10 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli O157:H7 str. EDL933] gi|26107011|gb|AAN79195.1|AE016757_99 Penicillin-binding protein 5 precursor [Escherichia coli CFT073] gi|41212|emb|CAA29774.1| unnamed protein product [Escherichia coli K-12] gi|1651259|dbj|BAA35275.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. MG1655] gi|73854645|gb|AAZ87352.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei Ss046] gi|81240049|gb|ABB60759.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella dysenteriae Sd197] gi|91071253|gb|ABE06134.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli UTI89] gi|110342453|gb|ABG68690.1| D-alanyl-D-alanine carboxypeptidas, penicillin-binding protein 5 [Escherichia coli 536] gi|115511972|gb|ABJ00047.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli APEC O1] gi|157081287|gb|ABV20995.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|169888046|gb|ACB01753.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|169888147|gb|ACB01854.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170521438|gb|ACB19616.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|187766838|gb|EDU30682.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188490615|gb|EDU65718.1| penicillin-binding protein 5 [Escherichia coli 53638] gi|189002783|gb|EDU71769.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189360912|gb|EDU79331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189373492|gb|EDU91908.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|190902607|gb|EDV62340.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190907397|gb|EDV66994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|194423634|gb|EDX39624.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|208728050|gb|EDZ77651.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208732348|gb|EDZ81036.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208737470|gb|EDZ85154.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209159918|gb|ACI37351.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209777148|gb|ACI86886.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777150|gb|ACI86887.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777152|gb|ACI86888.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777154|gb|ACI86889.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777156|gb|ACI86890.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209911149|dbj|BAG76223.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11] gi|215263744|emb|CAS08080.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli O127:H6 str. E2348/69] gi|217322346|gb|EEC30770.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|218350804|emb|CAU96496.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli 55989] gi|218359942|emb|CAQ97485.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli IAI1] gi|218364339|emb|CAR02013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli S88] gi|218368990|emb|CAR16744.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli IAI39] gi|218426019|emb|CAR06836.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli ED1a] gi|218431063|emb|CAR11939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli UMN026] gi|222032392|emb|CAP75131.1| Penicillin-binding protein 5 [Escherichia coli LF82] gi|226898605|gb|EEH84864.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp. 3_2_53FAA] gi|227838475|gb|EEJ48941.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972] gi|238860729|gb|ACR62727.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BW2952] gi|242376408|emb|CAQ31107.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli BL21(DE3)] gi|253325426|gb|ACT30028.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972615|gb|ACT38286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli B str. REL606] gi|253976809|gb|ACT42479.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BL21(DE3)] gi|254591198|gb|ACT70559.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli O157:H7 str. TW14359] gi|257752533|dbj|BAI24035.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257758005|dbj|BAI29502.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|257763136|dbj|BAI34631.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|281177781|dbj|BAI54111.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE15] gi|284920432|emb|CBG33493.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli 042] gi|290761456|gb|ADD55417.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia coli O55:H7 str. CB9615] gi|291325271|gb|EFE64686.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B088] gi|291428480|gb|EFF01505.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1412] gi|291433986|gb|EFF06959.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B185] gi|291471935|gb|EFF14418.1| conserved hypothetical protein [Escherichia coli B354] gi|294492617|gb|ADE91373.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034] gi|298279368|gb|EFI20876.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1302] gi|300298421|gb|EFJ54806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300304453|gb|EFJ58973.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300355406|gb|EFJ71276.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300396141|gb|EFJ79679.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|300400495|gb|EFJ84033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300407211|gb|EFJ90749.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300412458|gb|EFJ95768.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300416758|gb|EFK00069.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300457097|gb|EFK20590.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300460633|gb|EFK24126.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300524403|gb|EFK45472.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300529548|gb|EFK50610.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300842663|gb|EFK70423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300844500|gb|EFK72260.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|305853699|gb|EFM54138.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli NC101] gi|306907354|gb|EFN37859.1| Beta-lactamase [Escherichia coli W] gi|307552502|gb|ADN45277.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972] gi|307627930|gb|ADN72234.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UM146] gi|308120876|gb|EFO58138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|308926048|gb|EFP71526.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|309700870|emb|CBJ00167.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli ETEC H10407] gi|310337361|gb|EFQ02499.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|312290168|gb|EFR18051.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312945179|gb|ADR26006.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O83:H1 str. NRG 857C] gi|315059887|gb|ADT74214.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli W] gi|315135298|dbj|BAJ42457.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli DH1] gi|315255065|gb|EFU35033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] gi|315287076|gb|EFU46490.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|315292098|gb|EFU51450.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] gi|315299178|gb|EFU58432.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] gi|320178421|gb|EFW53389.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] gi|320193039|gb|EFW67679.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320194186|gb|EFW68818.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|320198242|gb|EFW72846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|320638081|gb|EFX07845.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. G5101] gi|320643487|gb|EFX12657.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H- str. 493-89] gi|320648822|gb|EFX17449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H- str. H 2687] gi|320654408|gb|EFX22455.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660089|gb|EFX27619.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O55:H7 str. USDA 5905] gi|320664886|gb|EFX32021.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. LSU-61] gi|323153647|gb|EFZ39895.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14] gi|323158915|gb|EFZ44926.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010] gi|323179892|gb|EFZ65449.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180] gi|323185014|gb|EFZ70381.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357] gi|323191270|gb|EFZ76534.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1] gi|323379549|gb|ADX51817.1| Beta-lactamase [Escherichia coli KO11] gi|323945107|gb|EGB41169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] gi|323952790|gb|EGB48658.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323958390|gb|EGB54096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] gi|323963201|gb|EGB58769.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] gi|323967579|gb|EGB62995.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] gi|323976385|gb|EGB71475.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] gi|324006310|gb|EGB75529.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|324010472|gb|EGB79691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] gi|324016087|gb|EGB85306.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] gi|324116706|gb|EGC10621.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] gi|326341383|gb|EGD65175.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|326345839|gb|EGD69578.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|327254316|gb|EGE65938.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v] gi|330910393|gb|EGH38903.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331044541|gb|EGI16668.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605] gi|331049921|gb|EGI21979.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718] gi|331054906|gb|EGI26915.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206] gi|331076348|gb|EGI47630.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591] gi|331080734|gb|EGI51908.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299] gi|332096835|gb|EGJ01825.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 155-74] gi|332104122|gb|EGJ07468.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|332341978|gb|AEE55312.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88] Length = 403 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|283785832|ref|YP_003365697.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168] gi|282949286|emb|CBG88897.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168] Length = 390 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 126/247 (51%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MNN Sbjct: 99 KDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNNYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQYN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W L DG+KTG T +GFN++ASA+ G + LIAVI+GA R + + L Sbjct: 219 RNGLLWD--KSLNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGAQSPKGREEQARKL 276 Query: 260 LSMGFYN 266 L G N Sbjct: 277 LHWGQQN 283 >gi|251790547|ref|YP_003005268.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya zeae Ech1591] gi|247539168|gb|ACT07789.1| Beta-lactamase [Dickeya zeae Ech1591] Length = 403 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +TI K+A + Sbjct: 49 YILIDYNSGKVLAEKNADTRRNPASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ +I++S ND VA+A+ + ++ FV MN Sbjct: 107 TGNPDFQGSSLMFLKPGDRVPVYLLNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T+F HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 167 KALGLQNTNFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMN 226 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTG T ++G+N+VASA +G LI+ ++G R S L Sbjct: 227 RNGLLW--DSSLAVDGIKTGHTASAGYNLVASATEGQVRLISAVMGGRTFKGREAESKKL 284 Query: 260 LSMGF 264 L+ GF Sbjct: 285 LTWGF 289 >gi|315296383|gb|EFU55683.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] Length = 347 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|110804719|ref|YP_688239.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 5 str. 8401] gi|110614267|gb|ABF02934.1| penicillin-binding protein 5 [Shigella flexneri 5 str. 8401] Length = 427 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 73 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|331666984|ref|ZP_08367858.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271] gi|331066208|gb|EGI38092.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271] Length = 403 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|262164351|ref|ZP_06032089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] gi|262026731|gb|EEY45398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] Length = 389 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG ++ E NPASLTKLMTAYV +K + IS NA + Sbjct: 40 YVLIDYHTGKILVERNAHQKLNPASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKK 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + GS + L + + LIV+S ND +VAIAE + +E FV MN+ ++ LG+ Sbjct: 100 FPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ Y+T D+A+L I D P + G N N + Sbjct: 160 NNSSFANPHGLDDSNLYSTPYDIALLGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLL 219 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA G+ LI+V++G+ R S LLS GF Sbjct: 220 RDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKIREAESKQLLSYGF 277 >gi|187731390|ref|YP_001879357.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii CDC 3083-94] gi|187428382|gb|ACD07656.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC 3083-94] Length = 403 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQTMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|260438046|ref|ZP_05791862.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292809525|gb|EFF68730.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 385 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 150/271 (55%), Gaps = 14/271 (5%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F++I++ A +S LS+ + + L++ +TG +I E+ PD PAS+TK+MT Sbjct: 10 SFILILSSAHISVTADELSLTSKSAI----LMEASTGKIIYEHNPDEILRPASITKIMTL 65 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 ++F + + + + +T+S++A+ S + G T T++ +K + + SAND VA Sbjct: 66 ILIFDAIHDGRIKMDDTVTVSEHAASMGGSQVFLEAGETQTVETLIKCIAIASANDACVA 125 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E+ FV HMN +K L ++ T+F+N G+ H TTARD+A++S + +P Sbjct: 126 MAEYIDTSEENFVAHMNERAKGLSMTNTNFVNCCGLDADNHVTTARDVALMSKELINKYP 185 Query: 183 QYMHYFQ------IKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + +H I + +G+ NTN + + A G+KTG T +GF + A+A Sbjct: 186 E-IHNISTIWMDTITHVTRRGESDFTLTNTNKLIKQYEWATGLKTGSTSLAGFCLSATAK 244 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + D LI+V++ + D +R S LL+ G+ Sbjct: 245 RNDIELISVVMASKDGKSRVADSIKLLNYGY 275 >gi|331661996|ref|ZP_08362919.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143] gi|315616449|gb|EFU97066.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431] gi|331060418|gb|EGI32382.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143] Length = 394 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 40 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 97 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 98 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 158 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 217 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 218 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 277 Query: 262 MGF 264 GF Sbjct: 278 WGF 280 >gi|254227305|ref|ZP_04920737.1| beta-lactamase, putative [Vibrio sp. Ex25] gi|262396428|ref|YP_003288281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|151939917|gb|EDN58743.1| beta-lactamase, putative [Vibrio sp. Ex25] gi|262340022|gb|ACY53816.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 385 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I D P + K + N N Sbjct: 155 QDTYFVNSHGLDSEGIQTSPTDMAKLMQSIINDVPAVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGKMRLISVVMGTPSKQARTSQSKNLLSYGF 272 >gi|170021011|ref|YP_001725965.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli ATCC 8739] gi|193069040|ref|ZP_03049998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|256023756|ref|ZP_05437621.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia sp. 4_1_40B] gi|300951129|ref|ZP_07164994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300959200|ref|ZP_07171279.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|301028891|ref|ZP_07192063.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|307137249|ref|ZP_07496605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli H736] gi|331641134|ref|ZP_08342269.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736] gi|1778549|gb|AAB40832.1| penicillin-binding protein 5 [Escherichia coli] gi|169755939|gb|ACA78638.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] gi|192957584|gb|EDV88029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|260450201|gb|ACX40623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] gi|299878139|gb|EFI86350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|300314185|gb|EFJ63969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300449584|gb|EFK13204.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|323938394|gb|EGB34648.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] gi|323943047|gb|EGB39206.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] gi|323972087|gb|EGB67301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|331037932|gb|EGI10152.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736] Length = 427 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 73 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|330828593|ref|YP_004391545.1| Penicillin-binding protein [Aeromonas veronii B565] gi|328803729|gb|AEB48928.1| Penicillin-binding protein [Aeromonas veronii B565] Length = 398 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 9/241 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE + PASLTK+MT+Y++ L + T +TIS+NA Sbjct: 47 HILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKN 106 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y S+ F + G +++D+ K +I++S ND VA+AE L + F MN+ + LG+ Sbjct: 107 YSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGM 166 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + +HFMN HG+ GHY+TA DMA L + D P+ + K G N N Sbjct: 167 NDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPEEYKIYSQKSFVFNGITQHNRNRLL 226 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMG 263 W L DG+KTG G+N+V+SA + LIAV+LGA +R S LL+ G Sbjct: 227 W--DQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYG 284 Query: 264 F 264 F Sbjct: 285 F 285 >gi|138895883|ref|YP_001126336.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196248772|ref|ZP_03147472.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|134267396|gb|ABO67591.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196211648|gb|EDY06407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 391 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E P PAS+TK+MT ++ + E K + S+ A+ S Sbjct: 44 LIERDTGKVLYEKNPHEKLPPASMTKIMTMLLIMEAIDEGKLSYDEKVRTSEYAASMGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K LGL T F Sbjct: 104 QIFLEPGEEMTVDELLRAIAIGSANDASVAMAERIAGSEEAFVEMMNEKAKELGLKETKF 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ GHY++A DMAI++ + +Y ++ E KK+ NTN V Sbjct: 164 ANTTGLPAEGHYSSAYDMAIMARELLKYEGITKYTSKYEDYLRENTDKKFWLVNTNRLVK 223 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTGFT +G+ + A+A + +IAV+ GA +RN +L F++ Sbjct: 224 FYPGVDGLKTGFTSEAGYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKMLDYAFHH 281 >gi|161502774|ref|YP_001569886.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864121|gb|ABX20744.1| hypothetical protein SARI_00825 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 390 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESSKGREEQARKL 276 Query: 260 LSMGFYN-------------------KTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTT 299 L G N DR+KI +DF+ E+P+I + Sbjct: 277 LQWGQQNFATVQILHSGKKVGSERIWYGDREKIALGAEQDFWMALPKAEIPHIKAKYVLD 336 Query: 300 QKEI 303 +K++ Sbjct: 337 KKDL 340 >gi|89074975|ref|ZP_01161420.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89049214|gb|EAR54778.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 391 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++A N PASLTK+MT++V+ +K + ISKNA Sbjct: 41 YILVDYNSGKILAGNNEYEKLAPASLTKIMTSFVIGQEIKNGNISPDDTVVISKNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G ++ + + + +IV S ND VA+AE + +++ FV MN +KNLG+ Sbjct: 101 FPGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNGWAKNLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +THF N HG+ + YTT D++IL+ + D P + K G N N Sbjct: 161 KSTHFANVHGLDRPDLYTTPYDLSILTRSLIRDLPNEFKIYDEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V++A +G+ LI+V++G +N R S LL+ GF Sbjct: 221 W--DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLISVVMGTASKNARLAESKKLLNFGF 278 >gi|255318395|ref|ZP_05359628.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] gi|262378625|ref|ZP_06071782.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter radioresistens SH164] gi|255304387|gb|EET83571.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] gi|262299910|gb|EEY87822.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter radioresistens SH164] Length = 437 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 141/282 (50%), Gaps = 15/282 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L + A L+N + E+ + +++LD +G +IAE + +PASLTK+M AY Sbjct: 9 ILFSLCCASLANARLLQVVPESVEAAAWSILDPQSGQIIAEYNSEVQRSPASLTKMMVAY 68 Query: 64 VVFSFLKEKK-----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + ++ K + TP+ + S K+G +++D L LIV SAND Sbjct: 69 IALKEIENGKLNRNEILTATPVV---KMVMWDESQMYLKEGEQISVDQLLAGLIVMSAND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV +AE + F++ MN ++ LG+ THF N G+ GHY+TA D+A+L + Sbjct: 126 AAVTLAERISGNVPAFIERMNQEAQKLGMKNTHFTNPAGITMDGHYSTAHDLALLGQALV 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ---- 234 D P Y++Y + + + TN + DG+KTGFT A+G+N+ +A + Sbjct: 186 NDTPDYLNYSKQQSFTYNNHFHRATNLLLKQDATVDGLKTGFTKAAGYNLALTASRPTMN 245 Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 ++ LI V++G R +V+ LL++G+ D I Sbjct: 246 ADLPNRRLIVVVMGTTSAVKRAEVAYKLLNLGYAYTRDEVAI 287 >gi|310767134|gb|ADP12084.1| D-alanyl-D-alanine carboxypeptidase [Erwinia sp. Ejp617] Length = 402 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K +T+ K+A + Sbjct: 44 WILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDLVTVGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNAL--------KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L K ++++S ND ++A+A+ + ++ FV MNN Sbjct: 102 TGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNNYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G Y+TARDMA++ + D P + K + N Sbjct: 162 QALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKVFTFNNIRQYN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R + S L Sbjct: 222 RNRLLWS--TSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAIRFRESEKL 279 Query: 260 LSMGFYN 266 L+ G N Sbjct: 280 LTWGLRN 286 >gi|301643955|ref|ZP_07243981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|301077690|gb|EFK92496.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] Length = 427 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 73 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|261341254|ref|ZP_05969112.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] gi|288316558|gb|EFC55496.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 403 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL +HF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 TALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYKEKEFTFNGIRQTN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTEKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|15829924|ref|NP_308697.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. Sakai] gi|13360128|dbj|BAB34093.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. Sakai] Length = 403 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKDTDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|292487778|ref|YP_003530653.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430] gi|292899010|ref|YP_003538379.1| penicillin-binding protein 6 [Erwinia amylovora ATCC 49946] gi|291198858|emb|CBJ45968.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Erwinia amylovora ATCC 49946] gi|291553200|emb|CBA20245.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430] Length = 402 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+ V+AE D +PASLTK+M++YV+ LK K +T+ K+A + Sbjct: 44 WILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDVVTVGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MN+ Sbjct: 102 TGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNHYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ +G Y+TARDMA++ + D P + K + N Sbjct: 162 QALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAFTFNKIRQHN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R + S L Sbjct: 222 RNRLLWS--TNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAVRFRESEKL 279 Query: 260 LSMGFYN 266 L G N Sbjct: 280 LIWGVRN 286 >gi|254281581|ref|ZP_04956549.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR51-B] gi|219677784|gb|EED34133.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR51-B] Length = 381 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 135/243 (55%), Gaps = 13/243 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G V+ E+ D PASLTK+MTAY++ + + L+ + +S+ A Sbjct: 31 YLLMDFHSGEVLVEHNADDVLPPASLTKMMTAYILAEEIDAGRLSLSDEVPVSRTAWS-- 88 Query: 91 PSNSTFK--------KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N TF+ G T+T+ K +++ S ND VAIAE + +E+ F MN + Sbjct: 89 -QNPTFRGSSLMWIEPGKTVTVGELEKGIVISSGNDATVAIAEHIAGSEEAFAGMMNRYA 147 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYP 201 + LG++ATH++N+HG+ H T+ARD+A L+ I D P+ Y Y Q+ +Y Sbjct: 148 EILGMTATHYVNSHGLPNSAHVTSARDLATLAAAIIRDHPERYKVYKQLSFTYNDITQY- 206 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + DG+KTG+T +G+ +VASA + LI+V++G+ +R + SLL+ Sbjct: 207 NRNHLLRDDPSVDGLKTGYTSVAGYGLVASAERDGMRLISVVMGSNSTRSRKAETRSLLN 266 Query: 262 MGF 264 GF Sbjct: 267 YGF 269 >gi|259908963|ref|YP_002649319.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96] gi|224964585|emb|CAX56098.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96] gi|283478973|emb|CAY74889.1| dacC [Erwinia pyrifoliae DSM 12163] Length = 402 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K +T+ K+A + Sbjct: 44 WILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDLVTVGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNAL--------KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L K ++++S ND ++A+A+ + ++ FV MNN Sbjct: 102 TGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNNYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G Y+TARDMA++ + D P + K + N Sbjct: 162 QALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKVFTFNNIRQYN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R + S L Sbjct: 222 RNRLLWS--TSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAIRFRESEKL 279 Query: 260 LSMGFYN 266 L+ G N Sbjct: 280 LTWGLRN 286 >gi|269965808|ref|ZP_06179903.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269829543|gb|EEZ83782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 385 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|262375440|ref|ZP_06068673.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145] gi|262309694|gb|EEY90824.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145] Length = 437 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 103/317 (32%), Positives = 159/317 (50%), Gaps = 30/317 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ + A L NI P E+ + +T+LD+ +G VIAE+ D PASLTK+M AY Sbjct: 14 FISAFSHAALLNIVP-----ESVEAEAWTILDSQSGQVIAEHNADVQRAPASLTKMMVAY 68 Query: 64 VVFSFL---KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 + + K K + T ++ K + S K+G +++D L LI+ SAND A Sbjct: 69 IALKEIEAGKLDKNEVLTATSVVKTVM-WDESQMYLKEGDLISVDQLLAGLIIMSANDAA 127 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V +AE + +FV+ MN +K LG+ T+F N G+ HY+TA D+A LS + + Sbjct: 128 VTLAEKISGGIPQFVERMNQEAKALGMQHTNFQNPAGITMPEHYSTAADLARLSMAVVNE 187 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA--IQGD-- 236 P Y++Y + + TN + DG+KTGFT A+G+N+ +A + D Sbjct: 188 TPDYLYYSKQPSFTYNQHFHRATNRVLQVDPTVDGLKTGFTRAAGYNLALTANRVTADFE 247 Query: 237 ---QSLIAVILGALDRNTRNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + LI V+LG R +VS L+++ + Y + + IKD Q L E+P I Sbjct: 248 MPNRRLIVVVLGTNSAAKRAEVSHKLMNLAYAYTRNE-----VAIKD---QQLLAELPVI 299 Query: 293 SE-----EVCTTQKEII 304 +V T Q +II Sbjct: 300 KSTLKMFKVQTKQPQII 316 >gi|281600032|gb|ADA73016.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella flexneri 2002017] Length = 427 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 73 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 191 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 250 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 251 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 310 Query: 262 MGF 264 GF Sbjct: 311 WGF 313 >gi|254516725|ref|ZP_05128784.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR5-3] gi|219675148|gb|EED31515.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR5-3] Length = 379 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 12/248 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+ E+ D PASLTKLMTA+V+ S + + +T+S+NA Sbjct: 27 YLLVDANSGAVLVESNADEQLPPASLTKLMTAFVLASEIDAGRLSRDDQVTVSRNAWS-- 84 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F S M ++ + + +++ S ND VA+AE + +E F MN + Sbjct: 85 -QNPVFNGSSLMWIEPRMPVTIGQLEQGIVISSGNDATVAVAEHIAGSETAFADLMNKHA 143 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG+ ++F N+HG+ H TARD+A L+ I T FP++ + + + N Sbjct: 144 AELGMHGSYFANSHGLPHPQHLMTARDLATLAKAIITRFPEHYKVYSQREYTYNDIRQYN 203 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +G DG+KTG+T +G+ +VASA + LI+V++G R + + SLL+ Sbjct: 204 RNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARETRSLLNY 263 Query: 263 GF-YNKTD 269 GF + +TD Sbjct: 264 GFRFYETD 271 >gi|315618015|gb|EFU98607.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 3431] Length = 390 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVKMMNNYA 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 EKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++A A+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIALAVDGQRRLIAVVMGADSAKGREEEARKL 276 Query: 260 LSMGFYNKT 268 L G N T Sbjct: 277 LRWGQQNFT 285 >gi|260899720|ref|ZP_05908115.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] gi|308106862|gb|EFO44402.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] Length = 385 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|218680596|ref|ZP_03528493.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 246 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 ++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY Sbjct: 1 AIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYA 60 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 YF ++G + P+ N +G F GADGMKTGF CASGFN + SA + ++L++V+LG Sbjct: 61 GYFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLG 120 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R +A+LL GF + + ++ + ++V +IS ++C+ + I Sbjct: 121 TDSLAARADATANLLQKGFTTQFPGSETLGSLRPYGPGQ--DQVADISADICSAKGAKIR 178 Query: 306 YNTQ 309 T+ Sbjct: 179 SETR 182 >gi|52425884|ref|YP_089021.1| DacC protein [Mannheimia succiniciproducens MBEL55E] gi|52307936|gb|AAU38436.1| DacC protein [Mannheimia succiniciproducens MBEL55E] Length = 394 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y ++D N+G V+A PD PASLTK+MT+YV+ LK+ K T IT+ +++ Sbjct: 43 YVVMDYNSGAVLASLNPDQRQYPASLTKMMTSYVIGDALKQGKIHNTDTITVGESSWGKN 102 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T++ + +I+ S ND VA+AE + T F+ MN ++ GL Sbjct: 103 FPDSSKMFLNLNQQVTVEQLNRGIIIVSGNDACVAMAEHVSGTTDNFINSMNKYAEQFGL 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ Y++ARDMAI+ I D P+ + K K PN N + Sbjct: 163 KNTHFTTVHGLDDANQYSSARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLL 222 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG T +G+N+VASA D LI V++G R S LL F Sbjct: 223 WDKTINVDGMKTGHTSQAGYNLVASATNADNMRLITVVMGVPTYKGREVESKKLLQWAF 281 >gi|328469382|gb|EGF40328.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 385 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|153839337|ref|ZP_01992004.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus AQ3810] gi|149747147|gb|EDM58135.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus AQ3810] Length = 385 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|87119258|ref|ZP_01075156.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121] gi|86165649|gb|EAQ66916.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121] Length = 408 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 127/241 (52%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD TG V+ E+ + PASLTKLMTAY+V L + +S+ A Sbjct: 63 YILLDAYTGEVLVEHNSRKEYPPASLTKLMTAYIVDYERNRGNIGLEDMVRVSEKAWRME 122 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + L++ ++ +I++S ND +VA+AE + +E F MN ++ LG++ + Sbjct: 123 GSRMFIREGTKVNLEDLMRGIIIQSGNDASVAVAEHIAGSEGAFADLMNQHAELLGMNNS 182 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+N+ G GHY++A D+A+LS FP + K + PN N + Sbjct: 183 HFVNSTGYPAEGHYSSAYDLAVLSRAKIIQFPDSYPMYSEKYFTYNDIRQPNRNKLLWRD 242 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG T A+G+ + ASA++ LI+V++G R + LL+ GF R Sbjct: 243 KTVDGLKTGHTEAAGYCLAASAVRNGTRLISVVMGTKSDEARANETQKLLNYGFRYYETR 302 Query: 271 K 271 K Sbjct: 303 K 303 >gi|28901449|ref|NP_801104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260363002|ref|ZP_05775871.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] gi|260880289|ref|ZP_05892644.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|260896672|ref|ZP_05905168.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|28809996|dbj|BAC62937.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308085410|gb|EFO35105.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|308091912|gb|EFO41607.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|308112244|gb|EFO49784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] Length = 385 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE+ PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEHNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|188534313|ref|YP_001908110.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] gi|188029355|emb|CAO97232.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] Length = 402 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G V+AE+ D +PASLTK+M++YV+ LK K +T+ +A + Sbjct: 44 WFLMDFHSGKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDLVTVGNDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+A+ + ++ FV MNN Sbjct: 102 TGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNNYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THF HG+ G ++TARDMA++ + D P + K + N Sbjct: 162 QTLGLKNTHFKTVHGLDADGQFSTARDMALIGQALIRDVPDEYALHKEKEFTFNNIRQHN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W+ + L DG+KTG T +G N+VASA++GD+ +I+V+LGA R + S L Sbjct: 222 RNRLLWS--SNLQVDGIKTGHTSGAGNNLVASAVEGDRRMISVVLGAATDAVRFRESEKL 279 Query: 260 LSMGFYN 266 L+ G N Sbjct: 280 LTWGLRN 286 >gi|262372029|ref|ZP_06065308.1| penicillin-binding protein 6B [Acinetobacter junii SH205] gi|262312054|gb|EEY93139.1| penicillin-binding protein 6B [Acinetobacter junii SH205] Length = 439 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 16/268 (5%) Query: 19 FLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-----SFLKEK 72 L IA ET + ++++D +G +IAE+ PASLTK+M AY+ L+++ Sbjct: 23 LLKIAPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYIALKEIEAGKLRKE 82 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + TP+ N + S K G +++D L LIV SAND AV +AE + + Sbjct: 83 DILTATPVV---NTVMWDESQMYLKTGEKISVDQLLAGLIVMSANDAAVTLAEKISGSVP 139 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +FV MN ++ LG+ THF N G+ HY+TA D+ +L+ I D P+Y++Y ++ Sbjct: 140 QFVARMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAKAIVQDTPEYLYYSKMPS 199 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILG 245 + + TN A+ ADG+KTG+T A+G+N+ +A + + LI ++LG Sbjct: 200 FSYNQRVHHATNLALKMDPTADGLKTGYTKAAGYNLALTAERPTFNPDVEKRRLIVIVLG 259 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 R +V+ L+++ F D I Sbjct: 260 TPSAVKRAEVAHKLMNLAFTYTRDEVVI 287 >gi|153820129|ref|ZP_01972796.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457] gi|255745929|ref|ZP_05419876.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262163513|ref|ZP_06031259.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] gi|262168229|ref|ZP_06035927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|126509329|gb|EAZ71923.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457] gi|255735683|gb|EET91081.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262023472|gb|EEY42175.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|262028080|gb|EEY46739.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] Length = 378 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E+ NPASLTKLMT+YV +K + IS NA + Sbjct: 29 YVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKK 88 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + L + + LIV+S ND +VAIAE + +E FV MN+ ++ LG+ Sbjct: 89 FPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGM 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ Y+T D+A+L I D P+ + G N N + Sbjct: 149 NNSSFANPHGLDNPALYSTPYDIALLGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLL 208 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA G+ LI+V++G+ +R S LLS GF Sbjct: 209 RDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 266 >gi|330448017|ref|ZP_08311665.1| penicillin-binding 6 domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492208|dbj|GAA06162.1| penicillin-binding 6 domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 459 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 2/236 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D NTG +IA N + PAS TKLM Y+V L + L + + + + A Sbjct: 106 FILMDANTGQIIASNDANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVQVPEVAWRTG 165 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K GS +++ ++ +IV+S ND AV +A + ++ FV MN T+ LG+ T Sbjct: 166 GSRMFLKPGSYVSVKELIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNT 225 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF G+ H++TA D+ +L I D+PQY H+F K E + PN N + T+ Sbjct: 226 HFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTY 285 Query: 211 LGADGMKTGFTCASGFNIVASA--IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A GMKTG T A+G+++V+SA L+ V+LG N S +L + GF Sbjct: 286 QYATGMKTGSTEAAGYSLVSSAEIPNNPMKLVGVVLGTQSLNDVAAQSKALFNYGF 341 >gi|163843338|ref|YP_001627742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|163674061|gb|ABY38172.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] Length = 410 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQKAKLLT 277 >gi|23501950|ref|NP_698077.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161619022|ref|YP_001592909.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|254704362|ref|ZP_05166190.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|260566392|ref|ZP_05836862.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|261755034|ref|ZP_05998743.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|23347896|gb|AAN29992.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161335833|gb|ABX62138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|260155910|gb|EEW90990.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|261744787|gb|EEY32713.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] Length = 410 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQKAKLLT 277 >gi|288958656|ref|YP_003448997.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288910964|dbj|BAI72453.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 396 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 125/232 (53%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + V+ E D P+S++K+MTAY+VF +K + L + + +S+ A S Sbjct: 52 LVDLTSNTVLFEKNADERMAPSSMSKIMTAYMVFEAIKAGRLTLESTLPVSERAWRMQGS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + + +D+ LK +IV+S ND + +AE L +E+ F + +K LGL +++F Sbjct: 112 KMFVELHNNIKVDDLLKGMIVQSGNDACIVLAEGLAGSEQSFAEQATKRAKELGLKSSNF 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +NA G HY TARD+AIL+ R+ DFP++ Y I+ + G N N + + Sbjct: 172 VNATGWPDPNHYMTARDLAILAERLIKDFPEFYKYDSIREFKYHGITQGNRNPLLYRNMN 231 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T A G+ + AS + + L+ V+ G R SA L+ GF Sbjct: 232 VDGLKTGHTDAGGYGLTASGERDGRRLLLVVNGLPSMQARADESARLIEWGF 283 >gi|117619099|ref|YP_857750.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560506|gb|ABK37454.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 396 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 9/241 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE + PASLTK+MT+Y++ L + T +TIS+NA Sbjct: 45 HILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKN 104 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y S+ F + G +++D+ K +I++S ND VA+AE L + F MN+ + LG+ Sbjct: 105 YSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGM 164 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + +HFMN HG+ GHY+TA DMA L + D P + K G N N Sbjct: 165 NDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPDEYKIYAQKSFVFNGITQHNRNRLL 224 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMG 263 W L DG+KTG G+N+V+SA + LIAV+LGA +R S LL+ G Sbjct: 225 W--DQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYG 282 Query: 264 F 264 F Sbjct: 283 F 283 >gi|90581616|ref|ZP_01237407.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90437199|gb|EAS62399.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 391 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++A + PASLTK+MT+YV+ +K + ISKNA Sbjct: 41 YILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVIGQEIKNGNISPDDTVVISKNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G ++ + + + +IV S ND VA+AE + +++ FV MN +KNLG+ Sbjct: 101 FPGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNGWAKNLGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +THF N HG+ + YTT D++IL+ + D P + K G N N Sbjct: 161 KSTHFANVHGLDRPDLYTTPYDLSILARSLIRDLPNEFKIYAEKSFTYNGITQYNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V++A +G+ LI+V++G +N R S LL+ GF Sbjct: 221 W--DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLISVVMGTASKNARLAESKKLLNFGF 278 >gi|170767905|ref|ZP_02902358.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170123393|gb|EDS92324.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 403 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFRGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|156977862|ref|YP_001448768.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|156529456|gb|ABU74541.1| hypothetical protein VIBHAR_06653 [Vibrio harveyi ATCC BAA-1116] Length = 388 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 131/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 38 YVLMDFQSGAIIAEQNARAGLAPASLTKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAK 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T+ N ++ +I++S ND VA+AE + E FV MN + L L Sbjct: 98 FPDSSKMFIQPKDEITVANLMRGVIIQSGNDACVALAEHVAGGEGAFVALMNGWADKLSL 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA 206 + T+F+N+HG+ G T+ DMA L I D P+ + K + K +Y Sbjct: 158 NDTYFVNSHGLDSEGIQTSPNDMATLMQSIINDVPEVYALYSEKVFKWNKITQYNRNKLL 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG KTG+T +G+++V+SA QG LI+V++G + +R S +LLS GF Sbjct: 218 WDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMRLISVVMGTPSKQSRITQSKNLLSYGF 275 >gi|296103671|ref|YP_003613817.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058130|gb|ADF62868.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 388 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 144/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 39 WVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 96 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV+ MN+ Sbjct: 97 KGNPVFDGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADHVAGGQPQFVKMMNDYV 156 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 157 QKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 216 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++AS + G + LIAV++GA R + L Sbjct: 217 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASTVDGQRRLIAVVMGADSPKGREDQARKL 274 Query: 260 LSMGFYN-------------------KTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTT 299 L G N D++++N +DF+ EVPNI + Sbjct: 275 LHWGQQNFDTVQILHNGKKVGTERIWYGDKEQVNLGTDQDFWLALPKAEVPNIKAKYVLD 334 Query: 300 QKEI 303 KE+ Sbjct: 335 TKEL 338 >gi|324016991|gb|EGB86210.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] Length = 347 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|255261606|ref|ZP_05340948.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62] gi|255103941|gb|EET46615.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62] Length = 389 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 138/267 (51%), Gaps = 18/267 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ E D PAS++KLMT Y+ F + + + L + +S++A Y S Sbjct: 36 VIDQTTGTLLMEKNADEALPPASMSKLMTLYMAFEAVSDGRLRLDEELPVSQHAMNYGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSAT 150 K+G + +++ ++ +IV S ND IAE+L TE F + M ++ LG+ + Sbjct: 96 TMFLKRGERVKVEDLIRGIIVLSGNDACAVIAEALSTDGTEAGFGRMMTARARELGMMNS 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYPNTNWAV 207 F N++G Q GH + RD++IL+ R+ TD+P Y F K E + K N N + Sbjct: 156 TFTNSNGWPQAGHRMSMRDLSILADRLITDYPTYYPLFSQKEFMFDEKESKNRLNRNPLL 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G +GADG+KTG T +G+ +V SA QG++ +I VI G L S + Sbjct: 216 GLGIGADGLKTGHTNEAGYGLVGSAKQGNRRIIFVITG-------------LDSAAARAE 262 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISE 294 K +N+ + F ++++ I+E Sbjct: 263 ESEKIVNWAFRQFVHRDITEAGTKIAE 289 >gi|226939903|ref|YP_002794976.1| DacC [Laribacter hongkongensis HLHK9] gi|226714829|gb|ACO73967.1| DacC [Laribacter hongkongensis HLHK9] Length = 382 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 18/243 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +G +A P+ PASLTKLMTAY+ F +KE + K Sbjct: 40 YIVNDFYSGQTLASRDPNTRIEPASLTKLMTAYLTFKAIKEGRL---------KGEQMLQ 90 Query: 91 PSNSTFK-KGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 PS ++ +GS M LD + ++ +IV+S ND V +AE++ +E+ F Q MN Sbjct: 91 PSEKAWRTEGSRMFLDLRTPVSVNDLMRGMIVQSGNDACVTLAEAIGGSEEVFAQMMNRE 150 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LG++ ++F N+ G+ Y T RD+ ILS + D+P++ + +K K P Sbjct: 151 AKRLGMTGSNFTNSTGLPDPNLYMTVRDLGILSGALIHDYPEFYPIYSMKEFTYNKIKQP 210 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + DG+KTG T ++GFN+V+SA + D+ +I+V++G R S+ LL+ Sbjct: 211 NRNLLLYRDPSVDGLKTGHTASAGFNLVSSAKRDDRRVISVVVGTTSPEARAVESSKLLN 270 Query: 262 MGF 264 G Sbjct: 271 YGL 273 >gi|295695956|ref|YP_003589194.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295411558|gb|ADG06050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 425 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PAS+TK+MT + L+ + L+ + S+ A+ S Sbjct: 77 LMDAATGTVLMEKNSHEKLPPASITKIMTMLLTVEALERGQVQLSDRVRTSERAASMGGS 136 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MTLD+ +K + V SAND +VA+AE L +E +FV MN ++ LG+ THF Sbjct: 137 QIFLEPGEEMTLDDMMKGIAVASANDASVAVAEYLAGSEAEFVSLMNRRAEELGMRDTHF 196 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWAV 207 +N +G+ GHYT+A D+AI+S R PQ + + + + K P NTN V Sbjct: 197 VNCNGLPAEGHYTSAYDIAIMS-RELLKHPQVLRWTSLYEDYLRKNTDRPFWLVNTNKLV 255 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT ++ + + A+A +GD +IAV++G RN +L F Sbjct: 256 RFYPGVDGLKTGFTESARYCLSATAKKGDFRVIAVVMGEPTSKQRNAEVTQMLDWAF 312 >gi|288549826|ref|ZP_05968319.2| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] gi|288317555|gb|EFC56493.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 347 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 141/301 (46%), Gaps = 35/301 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKGN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K G +T+ + + LIV S ND VA+A+ + + +FV MN+ + L Sbjct: 59 PVFDGSSLMFLKPGDRVTVRDLSRGLIVDSGNDACVALADHVAGGQPQFVNMMNDYVQKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 NLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + LL Sbjct: 179 LLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREDQARKLLHW 236 Query: 263 GFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTTQKE 302 G N K ++I Y K DF+ EVPNI + +KE Sbjct: 237 GQQNFDTVQILHNGKKVGTERIWYGDKEQVELGTDQDFWLALPKTEVPNIKAKYVLDKKE 296 Query: 303 I 303 + Sbjct: 297 L 297 >gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 385 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 133/244 (54%), Gaps = 6/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MTL+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTLNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQY 276 Query: 268 TDRK 271 T +K Sbjct: 277 TTKK 280 >gi|239832000|ref|ZP_04680329.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824267|gb|EEQ95835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 398 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P LLD +G V+ + P PASL KLMTA VVF L++ L T +S+NA Sbjct: 40 KAPQVLLLDDRSGTVLLSKNANVPIPPASLAKLMTAEVVFEALEKGLTTLDTAYPVSENA 99 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + S+ T+ + L+ +IV++AND A+ +AE L +E+ F + MN+ Sbjct: 100 WRTGGAPSGTSTMFARIKSSPTVADLLQGMIVQAANDGAIVLAEGLAGSERAFAERMNDR 159 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ LGL+A+ F+N+ G+ G + +D+ L+ I+T P+Y Y+ Sbjct: 160 ARELGLAASRFVNSTGLPAEGQTVSLQDLVRLAQHIRTAHPEYYKYYAQPAFTWNNIMQR 219 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASGF +V SA Q + L + G R + + LL Sbjct: 220 NRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRLYLAMSGLSSVKEREEEAKRLLQ 279 Query: 262 MGF 264 G Sbjct: 280 WGM 282 >gi|188582286|ref|YP_001925731.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179345784|gb|ACB81196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 418 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L+D +G V+ E D P++PAS+ KLMTA +VF +KE + + T T++++A Sbjct: 44 LVDAESGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRRGGA 103 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +S F + S + L + L+ LIV+S ND A+ IAE++ TE+ F MN +K +GL Sbjct: 104 GGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEEAFAGMMNQRAKEIGL 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NA G TARDMA ++ + +P++ + + K N N + Sbjct: 164 TRSTFRNATGYSAPDQKVTARDMARIAQHLIDSYPEFYKIYSEREFTWNKIKQQNRNPLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG+ SG+ + SA+Q Q LI V+ G R S ++ GF Sbjct: 224 TLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAESRKMMEWGF 280 >gi|83949599|ref|ZP_00958332.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM] gi|83837498|gb|EAP76794.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM] Length = 403 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D P PAS++KLMT YV F +++ + +T + +S +A+ Y S Sbjct: 37 VVDVGTGTVLLAKNADQPLPPASMSKLMTLYVTFEAIRDGRLSMTETLPVSAHAARYGGS 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + G +++++ L+ +IV S ND V +AESL TE F + M ++N+G++ + Sbjct: 97 TLFLQAGERVSVEDLLRGIIVLSGNDACVVLAESLSPDGTEAGFARFMTRRAQNMGMTNS 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYPNTNWAV 207 F N++G GH + RD+ +L+ ++ DFP++ F + E + + N N + Sbjct: 157 AFTNSNGWPAPGHRMSMRDLGLLARKLIEDFPEFYPMFAEEEFLFDEKESQNRYNRNPLL 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G +GADG+KTG T +G+ +V SA+Q + +I VI G Sbjct: 217 GLGIGADGLKTGHTAEAGYGLVGSAVQNGRRVIFVISG 254 >gi|261212007|ref|ZP_05926293.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] gi|260838615|gb|EEX65266.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] Length = 347 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D ++G V+AE + +PASLTK+MT+YV+ +K L + ISKNA +P Sbjct: 1 MDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEIKRGNISLNDDVVISKNAWAKNFPD 60 Query: 92 SNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + +LG+ + Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAV 207 HF NAHG+ Y+T D+A+L + D P + + G N N W Sbjct: 121 HFTNAHGLDNPNLYSTPYDLALLGQALIRDVPDEYAIYSEQKFTYNGITQYNRNGLLWD- 179 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+N+V+SA +G+ L+AV++G N R S LL GF Sbjct: 180 -KSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDSENARKAESKKLLGYGF 235 >gi|304559487|gb|ADM42151.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 399 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++G V+ E D +PASLTK+M +YV+ LK K + + K+A + Sbjct: 41 YILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQALKSGKIAPGDMVVVGKDA--WA 98 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN Sbjct: 99 TGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIALADHVAGSQDAFVNLMNQYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 GL THF HG+ G Y++ARDMA++S R+ D P + K + N Sbjct: 159 GAWGLKNTHFRTVHGLDSEGQYSSARDMALISQRLIADVPDEYQLNKEKEFTFNKIRQIN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTGFT +G N+VASA G LI+V+LGA R S L Sbjct: 219 RNRLLWD--SSLNVDGVKTGFTGGAGHNLVASATDGPMRLISVVLGAPTDRIRFDESKKL 276 Query: 260 LSMGF 264 L+ GF Sbjct: 277 LTWGF 281 >gi|154248244|ref|YP_001419202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154162329|gb|ABS69545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 399 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 11/250 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG ++ E D P +L K+MTA VVFS LK K L TP T+S NA Sbjct: 34 PSAILVDYETGTILFEKDADRRIAPGTLAKVMTADVVFSQLKAGKIALDTPFTVSVNAWR 93 Query: 89 YPPSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S G+ M + L ++V S ND A+A+AE + TE +F Q M Sbjct: 94 RGGGPS---GGAAMFAEVNKPAPVGELLAGMLVVSGNDAAIALAEGVGGTETEFSQQMTE 150 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K +G++ + F NA G G ++TARD+++L+ + +P Y F +E K Sbjct: 151 RAKAIGMANSEFRNATGFADPGQFSTARDLSVLAQHVIRTYPDYYPVFARTSIEWSRIKQ 210 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADG++ G+ G++ + SA+Q Q LI V+L A R + + LL Sbjct: 211 RNRNVLLDAGIGADGLQIGWVKDVGYHALGSAVQNGQRLIVVVLAAKTEKERLEEAKKLL 270 Query: 261 SMGFYNKTDR 270 GF + R Sbjct: 271 EWGFQSFRQR 280 >gi|91223153|ref|ZP_01258419.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] gi|91191966|gb|EAS78229.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] Length = 385 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE PASLTKLMTAYVV +K + +T+S+NA ++ Sbjct: 35 YVLMDFQSGAIIAEYNGRAGLAPASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAK 94 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F K +++ N ++ +I++S ND VA+AE + +E+ FV MN ++ LGL Sbjct: 95 FPGSSKMFIKPKDEISVANLMRGVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F+N+HG+ G T+ DMA L I +D P + K + N N Sbjct: 155 QDTYFVNSHGLDSDGIQTSPTDMARLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLL 214 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG KTG+T +G+++V+SA +G LI+V++G + R S +LLS GF Sbjct: 215 W--DNSIDVDGGKTGYTSNAGYSLVSSAKEGRMRLISVVMGTPSKQARISQSKNLLSYGF 272 >gi|67906493|gb|AAY82600.1| predicted penicillin-binding protein 6 precursor [uncultured bacterium MedeBAC35C06] Length = 380 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 132/246 (53%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F++ A L Y L++ TG VIAE D PAS+TK+MT YVV + L Sbjct: 21 FVAPAPKLDLKAYILIEPQTGTVIAEYNSDLHVEPASMTKIMTGYVVADQIGNDLINLND 80 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + IS+ A S + G +++++ LK +I++S ND +VA+AE TE+ FV M Sbjct: 81 SVLISERAWRMGGSKMFIEAGKRVSVEDLLKGVIIQSGNDASVALAEYSGGTEEGFVDLM 140 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +++LG++ T F+N+ G+ GHY++A+D+A L+ FP+ ++ K E Sbjct: 141 NAYAQSLGMNNTTFLNSTGLPAEGHYSSAKDLAYLTSNFINKFPEIYSLYKEKSFEFNSI 200 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K N N + +DG+KTG T ++G+ +V SA +G LI V+ G+ R + Sbjct: 201 KQLNRNKLLWRDDSSDGVKTGHTESAGYCLVGSAKRGGMRLITVVAGSSSDKKRFDDTQR 260 Query: 259 LLSMGF 264 LL GF Sbjct: 261 LLEYGF 266 >gi|269139610|ref|YP_003296311.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|267985272|gb|ACY85101.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] Length = 411 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD ++G V+ E D +PASLTK+M +YV+ LK K + + K+A + Sbjct: 53 YILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQALKSGKIAPGDMVVVGKDA--WA 110 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN Sbjct: 111 TGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIALADHVAGSQDAFVNLMNQYV 170 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 GL THF HG+ G Y++ARDMA++S R+ D P + K + N Sbjct: 171 GAWGLKNTHFRTVHGLDSEGQYSSARDMALISQRLIADVPDEYQLNKEKEFTFNKIRQIN 230 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTGFT +G N+VASA G LI+V+LGA R S L Sbjct: 231 RNRLLWD--SSLNVDGVKTGFTGGAGHNLVASATDGPMRLISVVLGAPTDRIRFDESKKL 288 Query: 260 LSMGF 264 L+ GF Sbjct: 289 LTWGF 293 >gi|218549792|ref|YP_002383583.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia fergusonii ATCC 35469] gi|218357333|emb|CAQ89970.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia fergusonii ATCC 35469] gi|324114754|gb|EGC08722.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253] gi|325498188|gb|EGC96047.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia fergusonii ECD227] Length = 403 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 WILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFETVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTNQAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|238028745|ref|YP_002912976.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] gi|237877939|gb|ACR30272.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] Length = 433 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 80 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALASKKISMEQIVTPSEAVRRVG 139 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 140 TDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQKLGMK 199 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K + PN N + Sbjct: 200 GTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFTYNHIRQPNRNRLLW 259 Query: 209 TFLGADGMKTGFTCASGFNIVASA---IQG----DQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + G + L+ V++G + R + S +L+ Sbjct: 260 IDPTVDGLKTGHTQAAGYCLIASAKRPLPGSADVSRRLVTVMMGEPRESDRVQDSLKMLN 319 Query: 262 MGF 264 G+ Sbjct: 320 YGY 322 >gi|153009485|ref|YP_001370700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561373|gb|ABS14871.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 404 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ + PASL K+MT Y+ F LK + + +SKNA+ Sbjct: 33 WVVFDADSGRILGQDDANVQRAPASLAKMMTLYLAFEGLKTGRLHWDDAMPVSKNAAAKV 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T+T+ +A+ +I+ SAND A + E + +E F + M ++ +G+ +T Sbjct: 93 RMKLWLKPGETITVRDAINGMIIVSANDAATVMGEYIAGSEAAFGRLMTQRARQIGMKST 152 Query: 151 HFMNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F+N G+ + TTARDMA+L ++ DFP+ F + + + N + Sbjct: 153 FFVNPSGLTAKSTQLTTARDMAVLGMSLRRDFPEQYELFSQRSFTFRDRVRNGHNNLMYR 212 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA+ D+ L+ V+LGA R+ A LL+ Sbjct: 213 YQGVDGIKTGYTDVSGYNLVSSAVINDKHLVGVVLGAGSARQRDDQMAKLLT 264 >gi|146312224|ref|YP_001177298.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter sp. 638] gi|145319100|gb|ABP61247.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 394 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 155/338 (45%), Gaps = 44/338 (13%) Query: 6 VIIAMAML-SNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPASL 56 + IA+++L S++ P L+ + P + L+D TG ++ NPASL Sbjct: 11 LFIALSLLASSVTPALAADPLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPASL 70 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNAL 108 TKLMT YVV + + +T+ ++A + N F K G +++ + Sbjct: 71 TKLMTGYVVDRAIDSHRITPDDMVTVGRDA--WAKGNPVFDGSSLMFLKAGERVSVRDLS 128 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + LIV S ND VA+A+ + + +FV MN + LGL THF HG+ G +++A Sbjct: 129 RGLIVDSGNDACVALADYVAGGQPQFVNMMNEYVQKLGLRDTHFETVHGLDAPGQHSSAY 188 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASG 225 D+A+LS I P + H + K L G N N W L DG+KTG T +G Sbjct: 189 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGVTQQNRNGLLWD--KNLKVDGLKTGHTSGAG 246 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-----------KTDRKKIN 274 FN++ASA+ G + LIAVI+G R + LL G N K ++I Sbjct: 247 FNLIASAVDGQRRLIAVIMGGESPKGREDQARKLLHWGQQNFDTVQILHNGKKVGTERIW 306 Query: 275 YIIK---------DFYQQNLSNEVPNISEEVCTTQKEI 303 Y K DF+ EV NI + +KE+ Sbjct: 307 YGDKEHISLGTDQDFWLALPKAEVANIKAKYVLDKKEL 344 >gi|62289988|ref|YP_221781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82699916|ref|YP_414490.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|225627545|ref|ZP_03785582.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237815492|ref|ZP_04594490.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254689296|ref|ZP_05152550.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254697432|ref|ZP_05159260.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254701819|ref|ZP_05163647.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254706741|ref|ZP_05168569.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710152|ref|ZP_05171963.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis B2/94] gi|254714151|ref|ZP_05175962.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1] gi|254716791|ref|ZP_05178602.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1] gi|254730330|ref|ZP_05188908.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256031647|ref|ZP_05445261.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256159791|ref|ZP_05457534.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M490/95/1] gi|256255049|ref|ZP_05460585.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti B1/94] gi|256257546|ref|ZP_05463082.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256369499|ref|YP_003107007.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260168777|ref|ZP_05755588.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99] gi|260545262|ref|ZP_05821003.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260754808|ref|ZP_05867156.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260758030|ref|ZP_05870378.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260761853|ref|ZP_05874196.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260883826|ref|ZP_05895440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261218589|ref|ZP_05932870.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261222240|ref|ZP_05936521.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|261314205|ref|ZP_05953402.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317706|ref|ZP_05956903.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261321914|ref|ZP_05961111.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261752376|ref|ZP_05996085.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261758258|ref|ZP_06001967.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265988739|ref|ZP_06101296.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|265998204|ref|ZP_06110761.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|297248388|ref|ZP_06932106.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|62196120|gb|AAX74420.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616017|emb|CAJ11050.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|225617550|gb|EEH14595.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237790329|gb|EEP64539.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|255999659|gb|ACU48058.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260096669|gb|EEW80544.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260668348|gb|EEX55288.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260672285|gb|EEX59106.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260674916|gb|EEX61737.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260873354|gb|EEX80423.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260920824|gb|EEX87477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260923678|gb|EEX90246.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294604|gb|EEX98100.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261296929|gb|EEY00426.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303231|gb|EEY06728.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261738242|gb|EEY26238.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742129|gb|EEY30055.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|262552672|gb|EEZ08662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|264660936|gb|EEZ31197.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|297175557|gb|EFH34904.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] Length = 410 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 277 >gi|306841800|ref|ZP_07474484.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] gi|306288114|gb|EFM59506.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] Length = 370 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 6 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 65 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 66 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 125 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 126 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 185 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 186 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 237 >gi|50084413|ref|YP_045923.1| D-ala-D-ala-carboxypeptidase [Acinetobacter sp. ADP1] gi|49530389|emb|CAG68101.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter sp. ADP1] Length = 382 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ K K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQ--KLLKGELTEGEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +IV+S ND + A+AE + E F MN +K L Sbjct: 92 RGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRL 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THFMN+ G+ GHY++A+DMAIL+ I D +Y + K G K N N Sbjct: 152 GMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G N R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVNERANQTRTLLAWGFS 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|189024230|ref|YP_001934998.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|189019802|gb|ACD72524.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] Length = 397 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 33 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 93 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 152 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 153 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 212 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 213 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 264 >gi|85713001|ref|ZP_01044039.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145] gi|85693170|gb|EAQ31130.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145] Length = 388 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 131/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG V+AE D PASLTK+MT+Y++ ++ + + +TIS+NA Sbjct: 40 YILIDHKTGKVLAEGNADESLPPASLTKMMTSYIIGKEIQAGRISNSDMVTISENAWAKN 99 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ +++ + +I+ S ND VA+AE + +E F MN ++ +G+ Sbjct: 100 FPESSKMFIEVGTEVSVSDLNHGIIISSGNDACVAMAEYIAGSEGAFADLMNTYAQEVGM 159 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +++HF N+HG+ Y +ARDM+ L+ + + P+ + K K N N Sbjct: 160 TSSHFANSHGLPDPEQYVSARDMSKLASALINETPEEYKIYSQKSYTYNNIKQYNRNALL 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W + DG+KTG T +G+++V SA+ GD LI+V++G R S LL+ GF Sbjct: 220 W--DRSMNVDGIKTGHTSEAGYSLVTSAVDGDTRLISVVIGTGSEQARKIESKKLLNYGF 277 >gi|50084374|ref|YP_045884.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ADP1] gi|49530350|emb|CAG68062.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ADP1] Length = 436 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 144/275 (52%), Gaps = 14/275 (5%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A L NI P E+ + ++++D +G +I+E+ PASLTK+M AY+ Sbjct: 18 VAHANLLNIAP-----ESVEAEAWSIVDAQSGQIISEHNSHIQRAPASLTKMMVAYITLK 72 Query: 68 FLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 LK K T +T + N + S K G +++D L LIV SAND AV +AE Sbjct: 73 ELKAGKLHKTDILTATPVVNMVMWDESQMYLKPGEQISIDQLLAGLIVMSANDAAVTLAE 132 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + F++ MN ++ LG+ T+F N GV HY+T+ D+A+L+ I P Y+ Sbjct: 133 RISGNVPDFLKRMNQEAQALGMKDTYFSNPAGVTMPDHYSTSHDLALLAQAIVKQTPDYL 192 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQS 238 Y ++ + + + TN A+ ADG+KTG+T A+G+N+ +A + D+ Sbjct: 193 SYSKLPSFSYQQRFHRATNLALKIDPTADGLKTGYTKAAGYNLALTAKRPTMNVDIPDRR 252 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +I V+LG + + R +V+ L+++ + D + I Sbjct: 253 MIVVVLGTKNAHKRAEVANKLMNLAYAYTRDEEVI 287 >gi|297544591|ref|YP_003676893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842366|gb|ADH60882.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ E P PAS+TK+MT + + K +T + SK+A + + Sbjct: 38 LMEANTGQILYEKDSHKPLPPASVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEIGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEIMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPDEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A + D LIAV+ GA D TR +A LL GF N Sbjct: 217 KGVDGIKTGSTSEALYCMAATAKRADTRLIAVVFGAPDSETRFSETAKLLDYGFAN 272 >gi|301154770|emb|CBW14233.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus parainfluenzae T3T1] Length = 395 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YVV + LK+ K +TI ++A Sbjct: 43 YVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGAALKQGKIHNEDMVTIGESAWGRN 102 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + K +I+ S ND VA+AE + T FV MN + GL Sbjct: 103 FPDSSKMFLNLNQQVSVGDLNKGIIIVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGL 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+F HG+ Y+TARDMAI+ I D P+ + K K PN N + Sbjct: 163 KNTNFTTPHGLDDPNQYSTARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLL 222 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 223 WDKTINVDGMKTGHTSQAGYNLVASATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFA 282 Query: 266 N 266 N Sbjct: 283 N 283 >gi|206559102|ref|YP_002229862.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia J2315] gi|198035139|emb|CAR51013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein precursor) [Burkholderia cenocepacia J2315] Length = 436 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S Sbjct: 83 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ + LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAARLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 203 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+GF ++ASA + G + L++V++G N R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGFCLIASAKRAIPGVDGQRRLVSVMMGEQKENDRTQDSMKMLNY 322 Query: 263 GF 264 G+ Sbjct: 323 GY 324 >gi|197284323|ref|YP_002150195.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis HI4320] gi|227358533|ref|ZP_03842858.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis ATCC 29906] gi|194681810|emb|CAR41057.1| putative penicillin-binding protein [Proteus mirabilis HI4320] gi|227161244|gb|EEI46318.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis ATCC 29906] Length = 403 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ ++ K + I + A + Sbjct: 49 YILIDYNSGKVLAEKNADVRRDPASLTKMMTSYVIGQAIRAGKISNNDIVPIGEEA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L K+ + ++S ND VA+A + ++ FV MN+ Sbjct: 107 TGNPVFRGSSLMFLKPGDKVTVSQLTRGINLQSGNDACVAMASYVAGSQDTFVTMMNDYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y++ARDMA++ + D P+ ++ K + N Sbjct: 167 KRLGLQNTQFQTVHGLDAPGQYSSARDMALIGAALIRDVPEEYAIYKEKEFTYNNIRQTN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DG+KTG T A+G+N+VASA +G+ LI+ ++G R+ S LL+ Sbjct: 227 RNGLLWDTSLNVDGIKTGHTEAAGYNLVASATEGNMRLISAVMGGHSSKGRDAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|261212803|ref|ZP_05927087.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] gi|260837868|gb|EEX64545.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] Length = 378 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E+ NPASLTKLMT+YV +K + IS NA + Sbjct: 29 YVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKK 88 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + L + + LIV+S ND +VAIAE + +E FV MN+ + LG+ Sbjct: 89 FPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWALQLGM 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N HG+ Y+T D+A+L I D P+ + G N N + Sbjct: 149 NNSSFANPHGLDNPNLYSTPYDIALLGQAIIRDLPEIYTLYSEPSFTYNGITQYNRNGLL 208 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA G+ LI+V++GA R S LLS GF Sbjct: 209 RDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGAKSVKIREAESKQLLSYGF 266 >gi|146310825|ref|YP_001175899.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter sp. 638] gi|145317701|gb|ABP59848.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 403 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEMNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL +HF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 SALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYKEKEFTFNGIRQTN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLKVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|45644640|gb|AAS73028.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine gamma proteobacterium EBAC20E09] Length = 382 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/259 (35%), Positives = 140/259 (54%), Gaps = 7/259 (2%) Query: 12 MLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 ++SNI F+ A L Y L+D T VIA++ D PAS+TK+MTAYVV Sbjct: 10 LVSNIILGQSFVPNAPELNLKGYILIDPTTNTVIAQSNSDGLIEPASMTKVMTAYVVADQ 69 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 ++ + + IS+ A + S + G +++ + LK +I++S ND AVAIAE + Sbjct: 70 IQNDLISIDDEVLISEKAWKMGGSKMFIEVGKRVSILDLLKGIIIQSGNDAAVAIAEYVG 129 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 TE FV MN + +LG++ T F+N+ G+ H TTA D+AIL+ T FP+ F Sbjct: 130 GTEDGFVDLMNAYAASLGMNNTSFINSTGLPDVNHLTTAEDLAILTSNFITKFPEIYALF 189 Query: 189 QIKGLE---IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K E I G KY N N + +DG+KTG T ++G+ ++ SA +G+ LI V+ G Sbjct: 190 KEKEFEYGGISGNKY-NRNKLLWRDETSDGVKTGHTSSAGYCLIGSAKRGNMRLITVVAG 248 Query: 246 ALDRNTRNKVSASLLSMGF 264 + N + LL GF Sbjct: 249 SDSANNSFSDTQRLLEYGF 267 >gi|58583579|ref|YP_202595.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625391|ref|YP_452763.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575165|ref|YP_001912094.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428173|gb|AAW77210.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369331|dbj|BAE70489.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519617|gb|ACD57562.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 401 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 WILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREG 111 Query: 87 -SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + S S F T L++ K + ++S ND A+A+AE + +E+ F MN + + Sbjct: 112 GAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNTYAAKI 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F+NAHG+ GH+++A D+A+L + D+P Y +IK ++ K N N Sbjct: 172 GMKDSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRNR 231 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+ +++SA + DQ LIAV++G R S +LL+ GF Sbjct: 232 LLWRDPAVDGIKTGHTSEAGYCLLSSAKRDDQRLIAVVMGDSSEEQRATDSLALLNWGF 290 >gi|306843944|ref|ZP_07476539.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] gi|306275699|gb|EFM57423.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] Length = 397 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 33 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 93 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 152 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 153 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 212 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 213 YAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLT 264 >gi|309787902|ref|ZP_07682512.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 1617] gi|308924301|gb|EFP69798.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 1617] Length = 347 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 15/246 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ NPASLTKLMT YVV + + +T+ ++A + N Sbjct: 1 MDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDN 58 Query: 94 STF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 F K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + L Sbjct: 59 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKL 118 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 L THF HG+ G +++A D+A+LS I P++ H + K L G N N Sbjct: 119 HLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNG 178 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL Sbjct: 179 LLWD--KTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKLLRW 236 Query: 263 GFYNKT 268 G N T Sbjct: 237 GQQNFT 242 >gi|259415214|ref|ZP_05739136.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] gi|259349124|gb|EEW60878.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] Length = 393 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 132/251 (52%), Gaps = 21/251 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ D P PAS++KLMT YV F +++ + + + +S++A Y Sbjct: 38 VVDQGTNTVLLSKNADVPMPPASMSKLMTLYVAFEAVRDGRLTMDERLPVSEHAMSY--- 94 Query: 93 NSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTS 142 KGSTM LD + L+ +IV S ND IAE+L TE F ++M + Sbjct: 95 -----KGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARYMTRRA 149 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+S + FMN++G GH + RD+AIL+ + DFP++ F + G+ N Sbjct: 150 RELGMSESTFMNSNGWPDQGHEMSVRDLAILAEHLIEDFPEFYPMFSEQEFAFDGRAPSN 209 Query: 203 T---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 T N + +GADG+KTG T +G+ +V SA QGD+ +I VI G R + S ++ Sbjct: 210 TRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGMNSTPERAEESEAI 269 Query: 260 LSMGFYNKTDR 270 ++ F T + Sbjct: 270 VNWAFRQFTKK 280 >gi|85858430|ref|YP_460632.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus aciditrophicus SB] gi|85721521|gb|ABC76464.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus aciditrophicus SB] Length = 310 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 122/232 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D V+ E D P PASLTK+++ Y+ + + + + + +S+ A + S Sbjct: 65 LMDMTDRRVLYEQNADQPIQPASLTKVLSLYLTYEAMAQGRVRWLDSVVVSQAARQADGS 124 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L+ +K + V SAND +VA+AE + +FV+ MN + LG++ + F Sbjct: 125 RMYIEAGERVPLETLIKGMTVISANDASVAVAEHVAGNVDRFVERMNRKAGELGMTHSVF 184 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +G+ G YTTARDM IL+ FP + ++ K N N + + Sbjct: 185 RTPNGLPAEGQYTTARDMMILADAYLRRFPGSLALHSMQYYTYKKITQHNCNALLKKYPD 244 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+K+GF ASG+N++A+A +G+ LIAV++GA R + + LL GF Sbjct: 245 VDGLKSGFVRASGYNLIATARRGNTRLIAVVMGARTPEIRVRETRRLLDAGF 296 >gi|323142851|ref|ZP_08077563.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT 12066] gi|322417393|gb|EFY08015.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT 12066] Length = 429 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 128/240 (53%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+ E+ PASLTK+MT+YV+ +K + + I++ A Sbjct: 73 WVLMDYHSGQVLFEHNGQKKIWPASLTKMMTSYVIGMEIKAGRLKPDDQVMITEEAWSKN 132 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y S+ F + G T+++D+ K +I++S ND VA+A L +E FV MN +K LGL Sbjct: 133 YSDSSKMFIEVGDTVSVDSLNKGIIIQSGNDACVAMAIHLAGSEAGFVSVMNTYAKQLGL 192 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 + THF N HG+ +Y+TA DMA+L + D P+ + K G K N N Sbjct: 193 NHTHFSNVHGLFSEDNYSTAYDMALLGRALIRDLPEEYSIYAQKEFTFNGIKQSNRNRLL 252 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG G+N+VASA G+ LIA ++GA + R +LS GF Sbjct: 253 W--DKTLNVDGIKTGHLSQVGYNLVASAPSGNMRLIASVIGAKSESQRADFCRQMLSYGF 310 >gi|294338753|emb|CAZ87085.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas sp. 3As] Length = 393 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 131/244 (53%), Gaps = 5/244 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G ++AE+ PASLTKLMTAY+ F LKE L +T SK A + Sbjct: 46 WLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEGTIKLNQMVTESKEAWQTG 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +++++ L +IV+S ND A+ +A+++ + FV MN ++ GL T Sbjct: 106 GSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVSAFVAMMNRQAQQWGLKGT 165 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGT 209 HFM+ G+ GH+TTA D++I++ I DFP Y YF++K PN + T Sbjct: 166 HFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVKEFTYNHITQPNRVSLLFT 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 DGMKTG+T +G+ ++ SA++ G + L+ V++G R + S LL+ + Sbjct: 226 DPSVDGMKTGYTSEAGYCMITSALRQFPNGPRRLLTVVMGTPTERARGEESQVLLNWAYQ 285 Query: 266 NKTD 269 N D Sbjct: 286 NFDD 289 >gi|303325746|ref|ZP_07356189.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio sp. 3_1_syn3] gi|302863662|gb|EFL86593.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio sp. 3_1_syn3] Length = 375 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 143/293 (48%), Gaps = 8/293 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D + ++ E D PASLTK+++ ++ + A + + +S+ A+ S Sbjct: 54 LYDLDNDAILFEQNADEHIPPASLTKVLSMFLALDHISAGHAAFDSVVPVSRAAARTGGS 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + L+ L + V S ND ++A+AE + + FV MN ++ LG+ + F Sbjct: 114 RMGLRNREQVPLEELLMGMAVSSGNDASMAVAEFVGGSAPAFVNMMNVKARTLGMRDSRF 173 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N HG+ G YTTARDM L+ +P + + L +G+ N N +G + G Sbjct: 174 RNPHGLPAQGQYTTARDMLTLARAYLRAYPWALKFHNTHVLNHQGRVTWNKNPLLGQYPG 233 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR-- 270 ADG+KTG+ ASG+N++ +A +GD+ L+AVILGA D R + LL GF ++ Sbjct: 234 ADGLKTGWVNASGYNLIFTASRGDKRLLAVILGAPDVRVRGTEACRLLDAGFQVCGNQAV 293 Query: 271 ---KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI---INYNTQMKEAKDKE 317 + + ++ Y+ +L + Q E + TQ K AK+K+ Sbjct: 294 SVAAALTQMPQENYRLDLRKTAHEAGRQYAQAQPEARKQAKHGTQSKYAKNKK 346 >gi|56420846|ref|YP_148164.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261417853|ref|YP_003251535.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|319767335|ref|YP_004132836.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] gi|56380688|dbj|BAD76596.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Geobacillus kaustophilus HTA426] gi|261374310|gb|ACX77053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|317112201|gb|ADU94693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] Length = 391 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E P PAS+TK+MT +V + E K + S+ A+ S Sbjct: 44 LIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASEYAASMGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K LGL THF Sbjct: 104 QIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQLGLKNTHF 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 NA G+ HY++A DMA+++ + D +Y ++ E KK+ NTN V Sbjct: 164 ANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVK 223 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTG+T + + + A+A + +IAV+ GA +RN +L F Sbjct: 224 FYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKMLDYAF 279 >gi|323170759|gb|EFZ56409.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68] Length = 403 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + + P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRNVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|254719144|ref|ZP_05180955.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13] gi|265984138|ref|ZP_06096873.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|264662730|gb|EEZ32991.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] Length = 410 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLT 277 >gi|256061158|ref|ZP_05451311.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33] gi|261325163|ref|ZP_05964360.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261301143|gb|EEY04640.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] Length = 410 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ + PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGRDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 277 >gi|226951361|ref|ZP_03821825.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. ATCC 27244] gi|226837883|gb|EEH70266.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. ATCC 27244] Length = 397 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A D PAS+TK+MT++++ L + K LT + N S + Sbjct: 49 YVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGK--LTEDEHVRMNESAWC 106 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S T T+ L+ +IV+S ND + A+AE + E F MN +K L Sbjct: 107 RGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRL 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y + K G K N N Sbjct: 167 GMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +GF + S+ +G LI+VI G N R + +LL+ GF Sbjct: 227 LLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNERANQTRALLAWGFA 286 Query: 266 N 266 N Sbjct: 287 N 287 >gi|153832244|ref|ZP_01984911.1| penicillin-binding protein 6 [Vibrio harveyi HY01] gi|148871555|gb|EDL70410.1| penicillin-binding protein 6 [Vibrio harveyi HY01] Length = 388 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +G +IAE PASLTKLMTAYVV + +K + +T+S+NA ++ Sbjct: 38 YVLMDFQSGAIIAEQNARAGLAPASLTKLMTAYVVGTEIKAGRLNWDDKVTVSENAWSAK 97 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + +T+ N ++ +I++S ND VA+AE + +E FV MN + L L Sbjct: 98 FPDSSKMFIQPKDEITVANLMRGVIIQSGNDACVALAEHVAGSEGAFVALMNGWADKLSL 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA 206 + T+F+N+HG+ G T+ DMA L I D P + K + K +Y Sbjct: 158 NDTYFVNSHGLDSEGIQTSPNDMATLMQAIINDVPDVYALYSEKVFKWNKITQYNRNKLL 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG KTG+T +G+++V+SA QG LI+V++G + +R S +LLS GF Sbjct: 218 WDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMRLISVVMGTPSKQSRITQSKNLLSYGF 275 >gi|294650880|ref|ZP_06728227.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] gi|292823298|gb|EFF82154.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] Length = 397 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A D PAS+TK+MT++++ L + K LT + N S + Sbjct: 49 YVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGK--LTEDEHVRMNESAWC 106 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S T T+ L+ +IV+S ND + A+AE + E F MN +K L Sbjct: 107 RGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRL 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y + K G K N N Sbjct: 167 GMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +GF + S+ +G LI+VI G N R + +LL+ GF Sbjct: 227 LLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNERANQTRALLAWGFA 286 Query: 266 N 266 N Sbjct: 287 N 287 >gi|83590342|ref|YP_430351.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83573256|gb|ABC19808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 412 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 118/218 (54%), Gaps = 8/218 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E + PAS+TKLMT V + +A L P+ +S+ A + S Sbjct: 65 LMDPQTGEILWEKNSHAHYYPASMTKLMTMVVAMDMVANGQATLDEPVQVSERAESFGGS 124 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T L+ L + V SAND AVA+AE L +E+ FV MN +K LGL THF Sbjct: 125 EVFLAVGETFPLEQMLIAIAVASANDAAVAVAEHLAGSEEAFVAMMNAKAKELGLKDTHF 184 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV 207 N HG+ +YT+A DMA+++ R +P+ + IK + +K P TN + Sbjct: 185 ANCHGLHDEQNYTSAYDMAVIA-RYALKYPKIREWTSIKRYTL--RKDPLTILDTTNKML 241 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + G DG KTGFT A+G N+V++ + L+AV++G Sbjct: 242 YWYPGTDGFKTGFTDAAGLNLVSTVERDGLRLVAVVMG 279 >gi|332971215|gb|EGK10178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 418 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 29/289 (10%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPY----------YTLLDTNTGHVIAENYPDHPWNPASL 56 +I +L ++ LS+ E P Y L++ TG V+A HP+ PASL Sbjct: 19 VIVWGVLLSVGSLLSVGEVFAEPQAEPLDIQTRSYVLMEMETGRVLAGKEEKHPYPPASL 78 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT Y+V +K + + ISKNA+ + G T++ + + SA Sbjct: 79 TKIMTEYLVLEEVKSGRIRWKDEVKISKNAASIGEAQVNLVAGEKRTVEELFHAMAIHSA 138 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND +VA+AE + +E+ FV MN +K LGL +HF+N G+ V+ H + Sbjct: 139 NDASVALAEHISGSERAFVGKMNKEAKRLGLKKSHFINCTGLPSRSYPQPPEVKGEHRMS 198 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK----YPNTNWAV-GT---FLGADGMK 217 A D+A L+ R+ D PQ + + + G+K PN+N + G+ + G DG+K Sbjct: 199 AEDIARLTRRLLRDHPQVIRTTSLPEYIFRQGEKRELILPNSNRMLPGSPHFYDGVDGVK 258 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 TG+T +G++ +A + LI V++G ++ R + LL GF N Sbjct: 259 TGYTREAGYSFTGTARRDGMRLITVVMGTDSKSRRFAETEKLLDFGFQN 307 >gi|297529521|ref|YP_003670796.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] gi|297252773|gb|ADI26219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] Length = 391 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E P PAS+TK+MT +V + E K + S+ A+ S Sbjct: 44 LIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASEYAASMGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K LGL THF Sbjct: 104 QIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQLGLKNTHF 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 NA G+ HY++A DMA+++ + D +Y ++ E KK+ NTN V Sbjct: 164 ANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVK 223 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTG+T + + + A+A + +IAV+ GA +RN +L F Sbjct: 224 FYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKMLDYAF 279 >gi|306838136|ref|ZP_07470992.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] gi|306406726|gb|EFM62949.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] Length = 397 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 33 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 93 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 152 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 153 IFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 212 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 213 YAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLT 264 >gi|74316665|ref|YP_314405.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus denitrificans ATCC 25259] gi|74056160|gb|AAZ96600.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus denitrificans ATCC 25259] Length = 402 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 124/234 (52%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+ ++ PASLTKLMT++V L+ + +TIS+ A Sbjct: 54 WVLMDAASGSVLVDHRGRERLPPASLTKLMTSHVAALELQRGRIKENDLVTISEKAWRMG 113 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ + + + L+ +IV+S ND ++A+AE L E F MN +K LGL+ T Sbjct: 114 GSKMFVRVGNQVAVHDLLRGIIVQSGNDASIALAEHLAGGEDTFAALMNQEAKRLGLADT 173 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF+NA G GHY++A DMA L+ I + P + + K G K PN N + Sbjct: 174 HFVNATGWPAEGHYSSALDMAKLARAIIIEDPAHYGLYAEKEFVWNGIKQPNRNLLLWRD 233 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VAS+ + Q +IA + G R +A LL+ GF Sbjct: 234 PSVDGLKTGHTEEAGYCLVASSQRDGQRMIAAVFGTESEAARATETAKLLAYGF 287 >gi|163852334|ref|YP_001640377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163663939|gb|ABY31306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 418 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L+D ++G V+ E D P++PAS+ KLMTA +VF +KE + + T T++++A Sbjct: 44 LIDADSGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRRGGA 103 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +S F + S + L + L+ LIV+S ND A+ IAE++ TE F MN +K +GL Sbjct: 104 GGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKEIGL 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NA G TARDMA ++ + +P++ + + K N N + Sbjct: 164 TRSTFRNATGYSAPDQKVTARDMARIAQHLIDTYPEFYKIYSEREFTWNKIKQQNRNPLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG+ SG+ + SA+Q Q LI V+ G R + ++ GF Sbjct: 224 TLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMMEWGF 280 >gi|261214059|ref|ZP_05928340.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|260915666|gb|EEX82527.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] Length = 416 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 277 >gi|240139670|ref|YP_002964147.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens AM1] gi|240009644|gb|ACS40870.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens AM1] Length = 403 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L+D ++G V+ E D P++PAS+ KLMTA +VF +KE + + T T++++A Sbjct: 29 LIDADSGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRRGGA 88 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +S F + S + L + L+ LIV+S ND A+ IAE++ TE F MN +K +GL Sbjct: 89 GGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKEIGL 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NA G TARDMA ++ + +P++ + + K N N + Sbjct: 149 TRSTFRNATGYSAPDQKVTARDMARIAQYLIDTYPEFYKIYSEREFTWNKIKQQNRNPLL 208 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG+ SG+ + SA+Q Q LI V+ G R + ++ GF Sbjct: 209 TLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMMEWGF 265 >gi|225374869|ref|ZP_03752090.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM 16841] gi|225213252|gb|EEG95606.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM 16841] Length = 421 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG ++ E PAS+TK+MT ++F ++ + L +T+S+ A+ Sbjct: 69 PSVLLMEASTGTILYEKNSHTVLRPASITKIMTLILIFDAIESGQISLEDTVTVSEYAAS 128 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + T T+D +K + + SAND VA+AE +C +E FV+ MN +K LG++ Sbjct: 129 MGGSQVFLEPNETQTVDTMIKCISIASANDACVAMAEFICGSEAAFVEKMNERAKGLGMN 188 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 T F+N G+ GH T+A D+A++S + T +PQ Y I +G E G Sbjct: 189 DTTFVNCCGLDVDGHMTSAYDVALMSRELTTKYPQIHDYSTIWMDTITHVTRRGSEEFG- 247 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + A G+KTG T + + + A+A++ LIAV++ A D R +A+ Sbjct: 248 -LTNTNKLIRQYQYATGLKTGSTSLAKYCVSATAVKDGMELIAVVMAAPDFKIRFADAAT 306 Query: 259 LLSMGF 264 LL+ GF Sbjct: 307 LLNYGF 312 >gi|262168638|ref|ZP_06036333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|262022756|gb|EEY41462.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] Length = 339 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 8/229 (3%) Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKK- 98 +AE D +PASLTK+MT+YV+ +K L + ISKNA +P S+ F + Sbjct: 1 MAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEV 60 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Sbjct: 61 GTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGL 120 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADG 215 Y+T D+A+L + D P+ + + G N N W + DG Sbjct: 121 DDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLW--DKSMNVDG 178 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 179 IKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 227 >gi|187932841|ref|YP_001886556.1| penicillin-binding protein DacF [Clostridium botulinum B str. Eklund 17B] gi|187720994|gb|ACD22215.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B str. Eklund 17B] Length = 396 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 7/246 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E PD + PAS+TK+MT + + K L +T S+NA + S Sbjct: 50 LIEPTTGKVVYEKNPDEKFAPASVTKIMTMLLTMEAIDNGKIKLDDKVTCSENAKKMGGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +++ LK + + S ND AVA+AE L TE FV MN ++ LG+ T F Sbjct: 110 TMLLDTGEIRSVEELLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ GH +TARD++++S + P + Y I +G+K P N N V Sbjct: 170 KNCNGLPADGHLSTARDISLMSIEL-LKHPTILKYTGTYMDSISEGRKSPIELVNHNKLV 228 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++ VI+GA RN+ + LL+ GF +K Sbjct: 229 RFFEGCDGLKTGFTNEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGF-SK 287 Query: 268 TDRKKI 273 + KKI Sbjct: 288 YEGKKI 293 >gi|213619044|ref|ZP_03372870.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 305 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + L Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL 276 Query: 260 LSMGFYN 266 L G N Sbjct: 277 LQWGQQN 283 >gi|251780585|ref|ZP_04823505.1| penicillin-binding protein DacF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084900|gb|EES50790.1| penicillin-binding protein DacF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 396 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 7/246 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E PD + PAS+TK+MT + + K L +T S+NA + S Sbjct: 50 LIEPTTGKVVYEKNPDEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +++ LK + + S ND AVA+AE L TE FV MN ++ LG+ T F Sbjct: 110 TMLLDTGEIRSVEELLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ GH +TARD++++S + P + Y I +G+K P N N V Sbjct: 170 KNCNGLPADGHLSTARDISLMSIEL-LKHPTILKYTGTYMDSISEGRKSPIELVNHNKLV 228 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++ VI+GA RN+ + LL+ GF +K Sbjct: 229 RFFEGCDGLKTGFTNEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGF-SK 287 Query: 268 TDRKKI 273 + KKI Sbjct: 288 YEGKKI 293 >gi|188588716|ref|YP_001921477.1| penicillin-binding protein DacF [Clostridium botulinum E3 str. Alaska E43] gi|188498997|gb|ACD52133.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] Length = 396 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 7/246 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E PD + PAS+TK+MT + + K L +T S+NA + S Sbjct: 50 LIEPTTGKVVYEKNPDEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +++ LK + + S ND AVA+AE L TE FV MN ++ LG+ T F Sbjct: 110 TMLLDTGEIRSVEELLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ GH +TARD++++S + P + Y I +G+K P N N V Sbjct: 170 KNCNGLPADGHLSTARDISLMSIEL-LKHPTILKYTGTYMDSISEGRKSPIELVNHNKLV 228 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++ VI+GA RN+ + LL+ GF +K Sbjct: 229 RFFEGCDGLKTGFTNEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGF-SK 287 Query: 268 TDRKKI 273 + KKI Sbjct: 288 YEGKKI 293 >gi|299068147|emb|CBJ39364.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum CMR15] Length = 397 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 13/245 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNA 86 + L D +G V+ D PASLTKLMTAY+ + +++ K MLT T+ Sbjct: 44 WMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAVAAVRDGKLKYDQMLTPTETVRSVK 103 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN ++ LG Sbjct: 104 TDE--SRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLG 161 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN N Sbjct: 162 MKGTHFMNAAGLPDPNHYTTARDLSILTSALIRDFPEDYKFYSQKEFTYNNIKQPNRNRL 221 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASL 259 + DG+KTG T ++G+ ++ SA + + L++V++G R + S + Sbjct: 222 LWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESLKV 281 Query: 260 LSMGF 264 L+ G+ Sbjct: 282 LNYGY 286 >gi|291545871|emb|CBL18979.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 395 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 9/245 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG VI PD +PAS+TK+MT ++F ++E L IT S A Sbjct: 42 PGAVLMEKETGTVIYSRDPDTRRSPASITKIMTLILIFDAIREGTLHLEDSITTSAYARS 101 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T + +K +++ S ND +VA+AE + TE+ FV+ MN +K+LG+ Sbjct: 102 MGGSQVFLEEGEKQTAETMIKCIVIASGNDASVAMAEHVAGTEQAFVERMNERAKDLGMK 161 Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK--- 199 THF++ G+ + HYTT D+A++S + + +P+ + Y + +I KG Sbjct: 162 NTHFVDCCGLTESQEHYTTPYDIALMSRELISRYPEVLTYSSVWIEDITHVTRKGSSKFT 221 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + ++ G G+KTG T + + + A A + +LIA ++ A D TR + +A+L Sbjct: 222 LTNTNKLLRSYEGCMGLKTGSTSIAKYCLSAVAERNGITLIASVMAAPDPKTRFRDAAAL 281 Query: 260 LSMGF 264 L+ GF Sbjct: 282 LNYGF 286 >gi|17545046|ref|NP_518448.1| penicillin-binding transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427336|emb|CAD13855.1| probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein [Ralstonia solanacearum GMI1000] Length = 397 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 130/245 (53%), Gaps = 13/245 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNA 86 + L D +G V+ D PASLTKLMTAY+ +++ K MLT T+ Sbjct: 44 WMLTDVTSGQVLGGGNVDERIEPASLTKLMTAYLAVEAVRDGKLKYDQMLTPTETVRSVK 103 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN ++ LG Sbjct: 104 TDE--SRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLG 161 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN N Sbjct: 162 MKGTHFMNAAGLPDPNHYTTARDLSILTAALIRDFPEDYKFYSQKEFTYNNIKQPNRNRL 221 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASL 259 + DG+KTG T ++G+ ++ SA + + L++V++G R + S + Sbjct: 222 LWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESLKV 281 Query: 260 LSMGF 264 L+ G+ Sbjct: 282 LNYGY 286 >gi|289578311|ref|YP_003476938.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|289528024|gb|ADD02376.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] Length = 381 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ E P PAS+TK+MT + + K ++ + SK+A + + Sbjct: 38 LMEANTGQILYEKDSHKPLPPASVTKVMTLLLAIEAIDSGKIKISDKVVTSKHAFDMGGT 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D+ +K + + SAND +VA+AE + TE+ FV+ MN +K LG T F Sbjct: 98 QIYLEIGEEMTVDDLMKAIAMNSANDASVALAEYIAGTEENFVEIMNKRAKELGAKNTTF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ GH T+ D+A++S + Y K ++ K+ NTN + + Sbjct: 158 KNATGLPDEGHLTSVYDIAMISREL-VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG T + + + A+A + D LIAV+ GA D TR +A LL GF N Sbjct: 217 KGVDGIKTGSTSEALYCMAATAKRADTRLIAVVFGAPDSETRFSETAKLLDYGFAN 272 >gi|218531093|ref|YP_002421909.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218523396|gb|ACK83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 418 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L+D ++G V+ E D P++PAS+ KLMTA +VF +KE + + T T++++A Sbjct: 44 LIDADSGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRRGGA 103 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +S F + S + L + L+ LIV+S ND A+ IAE++ TE F MN +K +GL Sbjct: 104 GGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKEIGL 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NA G TARDMA ++ + +P++ + + K N N + Sbjct: 164 TRSTFRNATGYSAPDQKVTARDMARIAQYLIDTYPEFYKIYSEREFTWNKIKQQNRNPLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG+ SG+ + SA+Q Q LI V+ G R + ++ GF Sbjct: 224 TLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMMEWGF 280 >gi|251796348|ref|YP_003011079.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] gi|247543974|gb|ACT00993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] Length = 405 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G VI E + PAS+TK+MT ++ L + K LT + S+ A+ S Sbjct: 60 LMDADSGTVIYEKDSNVKLPPASITKVMTMLLIMEALDDGKIKLTDKVPTSEYAASMGGS 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE L +E++FV MN ++ LGL THF Sbjct: 120 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQQFVVMMNEKAQQLGLQNTHF 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N +G+ HYT+A D+A++S + ++ +Y +Q + K + NTN V Sbjct: 180 ANCNGLPAADHYTSAHDIAVMSRELLKHSEITKYTGSYQDYLRKTSEKPFWLVNTNKLVR 239 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + GADG+KTGFT + F + A+A + + +IAV++G + TRN + +L F T Sbjct: 240 FYSGADGLKTGFTNEAKFCLTATAKRDNLRVIAVVMGEPNTKTRNAEVSQMLDFTFAQYT 299 >gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] gi|99035699|gb|ABF62557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] Length = 393 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 21/249 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ D P PAS++KLMT YV F +++ + + + +S++A Y Sbjct: 38 VVDQGTNTVLLSKNADVPMPPASMSKLMTLYVAFEAVRDGRLTMDERLPVSEHAMSY--- 94 Query: 93 NSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTS 142 KGSTM LD + L+ +IV S ND IAE+L TE F ++M + Sbjct: 95 -----KGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARYMTRRA 149 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ + FMN++G GH + RD+AIL+ + DFP++ F + E G+ N Sbjct: 150 RELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEHLIEDFPEFYPMFAEQVFEFDGRAPSN 209 Query: 203 T---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 T N + +GADG+KTG T +G+ +V SA QGD+ +I VI G R + S ++ Sbjct: 210 TRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLNSTPERAEESEAI 269 Query: 260 LSMGFYNKT 268 ++ F T Sbjct: 270 VNWSFRQFT 278 >gi|290476200|ref|YP_003469100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus bovienii SS-2004] gi|289175533|emb|CBJ82336.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus bovienii SS-2004] Length = 402 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++AE D +PASLTK+MT+YV+ +K K +T+ K+A + Sbjct: 48 YILIDYNSGKILAEKNSDIRRDPASLTKMMTSYVIGQAIKSGKIGPNDTVTVGKDA--WA 105 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ + ++S ND VA+A+ + ++ FV MN Sbjct: 106 TGNPVFKGSSLMFLKPGDQVSVAMLSRGINLQSGNDACVAMADYVAGSQDAFVNLMNKYV 165 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 +NLGL THF HG+ G Y++A DMA++ + D P ++ K PN Sbjct: 166 QNLGLQNTHFETVHGLDAAGQYSSAHDMALIGQALIRDVPDEYAIYKEKEFTYNNIHQPN 225 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + L DG+KTG T +G+N+V+SA + + LI+V++G+ R S LL+ Sbjct: 226 RNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATESNMRLISVVMGSPTFKGRETDSKKLLT 285 Query: 262 MGF 264 GF Sbjct: 286 WGF 288 >gi|163814026|ref|ZP_02205418.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759] gi|158450475|gb|EDP27470.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759] Length = 417 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 131/261 (50%), Gaps = 9/261 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L++ +G VI E D PAS+TK+MT + F + + K L + +S +A Sbjct: 63 KSPSAILMEAESGQVIYEKNCDTAMAPASVTKVMTLLLTFEAIDDGKFSLDDTVVVSDHA 122 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S F+ G T+ + +K +I+ S ND AVA+AE + +E FV MN +K LG Sbjct: 123 ASMGGSQCFFESGEEQTVQDMIKCIIIASGNDAAVAMAEKIAGSEPAFVNMMNERAKELG 182 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-------- 198 + F NA G+ GH +ARD+A++S + T + Y I I K Sbjct: 183 MENASFKNACGLDTSGHEMSARDIALMSRELITKHSEIFDYSGIWMDHITHKTARGDSRF 242 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + GA G+KTG+T + + + A+A + LIAVI+G + RN + Sbjct: 243 DLVNTNKFLNMYTGATGLKTGYTSTAKYCMSATAERDGIDLIAVIMGGETKEMRNNDACH 302 Query: 259 LLSMGFYNKTDRKKINYIIKD 279 LL G Y+K + IIK+ Sbjct: 303 LLDYG-YSKCHKYTDKEIIKE 322 >gi|90412590|ref|ZP_01220592.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90326398|gb|EAS42810.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 399 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 139/273 (50%), Gaps = 18/273 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ MA L PF + A+ P + L+ +G VIA + P PASLT Sbjct: 12 LFTLVTMASL----PFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASLT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKK-GSTMTLDNALKLLIVK 114 K+MT+YVV + + IS+NA ++P S+ F G +T+D K +I+ Sbjct: 68 KIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVIIS 127 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + + F++ MN ++ +G+ T+F N HG+ +TTA DMAIL+ Sbjct: 128 SGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDMAILT 187 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVAS 231 + + P+ F+ K + K N N W T L DG+KTG T +G+++V+S Sbjct: 188 RALIKELPEMYGLFKEKSFTFQDIKQGNRNGLLW--DTTLNVDGVKTGHTSKAGYSLVSS 245 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A Q Q IAV++G TR S LL+ GF Sbjct: 246 AEQSGQRFIAVVMGTKSTGTRRSESKKLLTWGF 278 >gi|269104718|ref|ZP_06157414.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161358|gb|EEZ39855.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 414 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+ NTG +IA + P PASLTK+MT +VV +K L+ +TIS+NA + Sbjct: 41 WVLMSYNTGQIIAGDNLHKPLAPASLTKIMTTFVVGEEIKAGNIQLSDMVTISENAWGKK 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F G ++++++ L+ +IV S ND VA+AE + + F++ MN ++ G+ Sbjct: 101 FPGSSKMFLNVGDSVSVEDLLRGVIVSSGNDATVALAEHVAGHQSAFIKMMNQYAERYGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 ++F N HG+ T+A DMA+L+ + P + K K N N Sbjct: 161 KDSYFSNPHGLDADDQTTSAYDMALLTRAFIQEVPDIYDMHKEKSFTFGDIKQGNRNALL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG+T +G+++V+SA G+Q LIAV+LG R S LLS GF Sbjct: 221 W--DETLHVDGVKTGYTKQAGYSLVSSAKNGEQRLIAVVLGTKSAKARRLESKQLLSWGF 278 >gi|330839897|ref|YP_004414477.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|329747661|gb|AEC01018.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 376 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 134/253 (52%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D P PAS TK+MT + ++ L++ +T+S+ A+E Sbjct: 36 LIEASTGRVLYEKAADVPRFPASTTKMMTCVLAI-----EEGDLSSILTVSRTAAET--E 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ G L + ++++S N +VAIAE L + F HMN +K +G THF Sbjct: 89 DTEVGAGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGAKDTHF 148 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTN 204 +N +G+ H +TA D+A I ++ +K P++ + K EI K + NTN Sbjct: 149 LNPNGLPDPAHVSTAHDIARIAAYGMKN--PKFRSFVGTKEREITWVTPEKKRARMANTN 206 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D R +A LL MGF Sbjct: 207 RLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLLDMGF 266 Query: 265 --------YNKTD 269 Y KTD Sbjct: 267 RRVKAAPAYTKTD 279 >gi|170747925|ref|YP_001754185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170654447|gb|ACB23502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 429 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 5/241 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P+ L+D ++G V+ E D ++PAS+ KLMT +VF LK + + T T++++A Sbjct: 45 PHAILIDADSGSVLFEKAADERFSPASMAKLMTTDIVFEALKSGRLSMDTEFTVTEDAWK 104 Query: 87 --SEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +S F + S + + + L+ LIV+S ND A+ IAE++ +E+ F MN +K Sbjct: 105 RGGAGGGGSSMFAQVNSRIKMADLLRGLIVQSGNDAAITIAENMAGSEEAFAGLMNQRAK 164 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F NA G TARDMA L+ I +P Y F K + N Sbjct: 165 EIGLTNSTFRNATGYSAPDQKVTARDMAKLALHIIDTYPDYYKIFSEKEFTWNKIRQQNR 224 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R S L+ G Sbjct: 225 NPLLALDIGADGLKTGYLEESGYALTGSAVQNGQRLVLVVSGLKTARDRASESRKLMEWG 284 Query: 264 F 264 F Sbjct: 285 F 285 >gi|260888699|ref|ZP_05899962.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|260861568|gb|EEX76068.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 438 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 134/253 (52%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D P PAS TK+MT + ++ L++ +T+S+ A+E Sbjct: 98 LIEASTGRVLYEKAADVPRFPASTTKMMTCVLAI-----EEGDLSSILTVSRTAAET--E 150 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ G L + ++++S N +VAIAE L + F HMN +K +G THF Sbjct: 151 DTEVGAGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGAKDTHF 210 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTN 204 +N +G+ H +TA D+A I ++ +K P++ + K EI K + NTN Sbjct: 211 LNPNGLPDPAHVSTAHDIARIAAYGMKN--PKFRSFVGTKEREITWVTPEKKRARMANTN 268 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D R +A LL MGF Sbjct: 269 RLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLLDMGF 328 Query: 265 --------YNKTD 269 Y KTD Sbjct: 329 RRVKAAPAYTKTD 341 >gi|114566158|ref|YP_753312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337093|gb|ABI67941.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 381 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 3/240 (1%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K Y L+D ++G V+ PAS+TKLMT + L+E K L + S+NA Sbjct: 33 KAESYVLMDADSGKVLLAKNEHKQLAPASMTKLMTLILAMEALEEGKVTLKDKVVTSENA 92 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + G M+ ++ L + V SAND VA+AE L T + FV MN+ +K LG Sbjct: 93 WKMGGSQIYLEPGEQMSYEDMLIAIAVGSANDACVAVAEHLEGTHQNFVDKMNHKAKMLG 152 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 L THF+N++G+ HYT+A DMA++ R P+ + Y IK +++ ++ NTN Sbjct: 153 LKNTHFINSYGLSAPKHYTSAYDMAVIG-REALAHPKILEYSSIKEYDLRQGEFKLFNTN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + GADG KTG+T + + + +A + LI+V++ + +++ + S LL+ GF Sbjct: 212 KLLWWYQGADGFKTGWTDEAKYCLAGTAKRDGLRLISVVMASPEKHGNFRDSMQLLNYGF 271 >gi|260773274|ref|ZP_05882190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] gi|260612413|gb|EEX37616.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] Length = 347 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 4/235 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D ++G ++AE + +PASLTK+MT+YV+ L L + IS+NA YP Sbjct: 1 MDYHSGKILAEKEMNTKLSPASLTKMMTSYVIGQELNRGNISLDDDVVISENAWAKNYPD 60 Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G+++ + + K +I++S ND VA+AE + +E FV MN + +L ++ T Sbjct: 61 SSKMFIEVGTSVKVRDLNKGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLNMTNT 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGT 209 HF N HG+ Y+T DMA+L + D P +Y Y + K +Y Sbjct: 121 HFANVHGLDHPELYSTPYDMALLGQALIRDVPDEYALYAEQKFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+++V+SA +G+ LIAV++G D N+R S LLS GF Sbjct: 181 SMNVDGIKTGHTTNAGYSLVSSATEGNMRLIAVVMGTKDINSRKTESKKLLSYGF 235 >gi|303238776|ref|ZP_07325308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302593655|gb|EFL63371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 384 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 1/267 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+ V + +A+ + + P AE + L++ +TG V+ E + PAS+TK+ Sbjct: 7 MKFLSVFLLIAIFTTMHPLNIYAEFESTAGSAILIEASTGQVLYEKNSEVSMPPASITKV 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT + F + + A T +++S+ A + S + GS ++ + + + + SAND Sbjct: 67 MTLLLGFEAISKGTAKWTDLVSVSEKAWKMEGSKMFLQVGSKVSYRDIIMGISIDSANDG 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +A+AE LC +E FV MN +K +GL + F N G+ Q GH TA+D+ ILS + Sbjct: 127 CIALAEYLCGSENAFVSAMNEKAKEIGLKNSTFKNCTGLPQEGHRLTAKDIVILSRYLIQ 186 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++P+ + + N N +G + GADG+KTG+T +G+ + A+A Q L Sbjct: 187 NYPEILEIESKTEFTFNDIRQFNRNPLLGVYEGADGLKTGWTEEAGYCLAATAKQNGIRL 246 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266 IAV+L D R LL+ GF N Sbjct: 247 IAVVLNTKDEKERQIAGQELLTYGFKN 273 >gi|288934486|ref|YP_003438545.1| beta-lactamase [Klebsiella variicola At-22] gi|290508688|ref|ZP_06548059.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|288889195|gb|ADC57513.1| Beta-lactamase [Klebsiella variicola At-22] gi|289778082|gb|EFD86079.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 387 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ K+A + Sbjct: 38 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDA--WA 95 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ + + LIV S ND VA+A+ + + +FV MN Sbjct: 96 KGNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYV 155 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P H + K L G N Sbjct: 156 EKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQN 215 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + +A L Sbjct: 216 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKL 273 Query: 260 LSMGFYN 266 L G N Sbjct: 274 LHWGQQN 280 >gi|86136162|ref|ZP_01054741.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193] gi|85827036|gb|EAQ47232.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193] Length = 391 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD T V+ + P PAS++KLMT YV F L++ + L + +S +A Y S Sbjct: 35 VLDQGTDTVLLSKNAEVPLPPASMSKLMTLYVAFEALRDGRLSLDERLPVSAHAMSYGGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND IAE+L TE F ++M + LG+ Sbjct: 95 TMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARYMTKRAHELGMMNA 154 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F N++G GH + RD+ +L+ + DFPQY F K G+ NT N + Sbjct: 155 SFANSNGWPAIGHRMSMRDLGVLAEHLIEDFPQYYPLFSEKSFAFDGRAPSNTRNRNPLL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G +GADG+KTG T +G+ +V SA+QGD+ +I V+ G R + + ++++ F Sbjct: 215 GLGIGADGLKTGHTSEAGYGLVGSAVQGDRRVIFVVTGLESNKARAEEAEAIVNWSF 271 >gi|254465451|ref|ZP_05078862.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I] gi|206686359|gb|EDZ46841.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I] Length = 389 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 129/241 (53%), Gaps = 5/241 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ D P PAS++KLMT YV F L++ + L + +S++A Y S Sbjct: 34 VVDAGTDTVLLSKNSDVPLPPASMSKLMTLYVAFEALRDGRLTLDERLPVSEHAMSYGGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND V IAE+L TE F ++M ++++G++A+ Sbjct: 94 TMFLDTTDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTKRAEDMGMTAS 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAV 207 F N++G GH + D+A+L+ R+ DFP+Y F E G+ N N + Sbjct: 154 TFANSNGWPAAGHRMSVHDLAVLAERLIEDFPEYYPLFAETTFEFDGRAPSNIRNRNPLL 213 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +GADG+KTG T +G+ +V SA QGD+ +I V+ G R + + ++++ F Sbjct: 214 RLGIGADGLKTGHTEEAGYGLVGSATQGDRRVIFVVSGLDTERGRAEEAEAIVNWSFRQF 273 Query: 268 T 268 T Sbjct: 274 T 274 >gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] Length = 385 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|254459679|ref|ZP_05073095.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2083] gi|206676268|gb|EDZ40755.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium HTCC2083] Length = 392 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 5/269 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR + IA ++ I + A + ++D TG V+ D PAS++K+M Sbjct: 1 MRHLITTIAALVVPLILALPAGAFETRAASAFVIDQTTGTVLLNKNADQMLPPASMSKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + +L + +SK+A Y S +T+++ ++ +IV S ND Sbjct: 61 TLYITFEALRDGRLVLDEKLPVSKHAMAYGGSTMFLDTTDRITVEDLIRGIIVLSGNDAC 120 Query: 121 VAIAESLCK--TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F + M ++ LG++ + F N++G Q GH + RD+A+L+ R+ Sbjct: 121 AVIAEALSPDGTEAGFARFMTQRAQQLGMTNSTFSNSNGWPQAGHRMSMRDLALLANRVI 180 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TDFP + F + + G+ NT N + +GADG+KTG T +G+ +V SA Q Sbjct: 181 TDFPSFYPLFSEREFKFDGRAPQNTRNRNPLLSLGIGADGLKTGHTQEAGYGLVGSAKQR 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264 + +I VI G R + + S+++ F Sbjct: 241 GRRVIFVISGLQSAQARAEEAESIVNWAF 269 >gi|152971007|ref|YP_001336116.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895589|ref|YP_002920324.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae NTUH-K2044] gi|330000619|ref|ZP_08303760.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|150955856|gb|ABR77886.1| DD-carboxypeptidase, penicillin-binding protein 6b [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547906|dbj|BAH64257.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537943|gb|EGF64124.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 389 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ K+A + Sbjct: 40 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDA--WA 97 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ + + LIV S ND VA+A+ + + +FV MN Sbjct: 98 KGNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYV 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P H + K L G N Sbjct: 158 EKLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQN 217 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + +A L Sbjct: 218 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKL 275 Query: 260 LSMGFYN 266 L G N Sbjct: 276 LHWGQQN 282 >gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] Length = 377 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 30 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASEHAASMGGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 90 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 150 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 208 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 209 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 265 >gi|119504244|ref|ZP_01626324.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2080] gi|119459752|gb|EAW40847.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2080] Length = 386 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 5/239 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEY 89 Y L+D TG V+ E+ D PASLTKLMT+Y++ + + L +T+S+NA S+ Sbjct: 35 YLLMDFATGEVLVEHNIDTRLPPASLTKLMTSYILAEEVDAGRLSLDDEVTVSRNAWSQN 94 Query: 90 PPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P + + G ++T+ + + + S ND VAIAE + +E+ FV MN ++ L Sbjct: 95 PKFRGSSLMWIEPGKSVTVGELEQGIAISSGNDATVAIAEHIAGSEEAFVALMNRYAEEL 154 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 L+ATHF N HG+ H TTARD+ L+ D P ++ + N N Sbjct: 155 ALTATHFENTHGLPNSDHLTTARDLGSLAIATIRDHPDRYRVYRQQSYTYNDITQYNRNH 214 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG+T +G+ +VASA + LI+V+LG+ +R + SLL+ GF Sbjct: 215 LLREDPSVDGLKTGYTSVAGYGLVASAEREGMRLISVVLGSNSTRSRKAETRSLLNYGF 273 >gi|85058773|ref|YP_454475.1| D-alanyl-D-alanine carboxypeptidase fraction A [Sodalis glossinidius str. 'morsitans'] gi|84779293|dbj|BAE74070.1| penicillin-binding protein 5 [Sodalis glossinidius str. 'morsitans'] Length = 403 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+ E D +PASLTK+MT+YV+ +K K +T++K+A + Sbjct: 49 YILIDYNSGKVLTEMNADVRRDPASLTKMMTSYVIGQAIKSGKITPNDVVTVNKDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L ++ +I++S ND VA+A+ + ++ FV MNN Sbjct: 107 TGNPVFKGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVGLMNNYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G +++ARDMA++ + D P ++ K + N Sbjct: 167 GALGLQNTHFETVHGLDAPGQFSSARDMAMIGKALIRDVPDEYATYKEKEFTFNNIRQMN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + + L DG+KTG T ++G+N+VASA +G LI+ +LG R S L++ Sbjct: 227 RNGLLWDSNLNVDGIKTGHTESAGYNLVASATEGQMRLISAVLGGHSMKGRENESRKLMT 286 Query: 262 MGF 264 GF Sbjct: 287 WGF 289 >gi|294852342|ref|ZP_06793015.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|294820931|gb|EFG37930.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] Length = 410 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 1/232 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 F N G+ + TTARDMA+L ++ DFP+ F +G+ Y N + Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQCSFTFRGRVYNGHNNLMYR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 226 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 277 >gi|206579571|ref|YP_002237570.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|206568629|gb|ACI10405.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] Length = 389 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ K+A + Sbjct: 40 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDA--WA 97 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ + + LIV S ND VA+A+ + + +FV MN Sbjct: 98 KGNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYV 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P H + K L G N Sbjct: 158 EKLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQN 217 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + +A L Sbjct: 218 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKL 275 Query: 260 LSMGFYN 266 L G N Sbjct: 276 LHWGQQN 282 >gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 396 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] Length = 385 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|168180436|ref|ZP_02615100.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] gi|226949102|ref|YP_002804193.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] gi|182668867|gb|EDT80845.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] gi|226842614|gb|ACO85280.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] Length = 407 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D+AI+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDIAIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 385 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] Length = 385 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 385 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|150016747|ref|YP_001309001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149903212|gb|ABR34045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 396 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G ++ E D + PAS+TK+MT + + K L +T S+NA + S Sbjct: 50 LMEPMSGKILYEKNADEKFAPASVTKIMTMLITMEGVDSGKIKLDDKVTCSENAKKMGGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+AE L TE++FV MN ++ LG+ T F Sbjct: 110 TMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTEQEFVNMMNKRAQELGMVNTTF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ GH +TA+D+AI+S + P+ + Y I +G+K P N N V Sbjct: 170 KNCNGLPADGHMSTAKDIAIMSKEL-LKHPKVLKYTGTYMDNISEGRKSPIELVNHNKLV 228 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ + LL+ GF Sbjct: 229 RFFEGCDGLKTGFTDEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDAGVLLNYGF 285 >gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAF 284 >gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|148653555|ref|YP_001280648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1] gi|148572639|gb|ABQ94698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1] Length = 413 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 15/243 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 Y L+D +TG ++AE D P PASLTK+MT++++ L + T P+ ++++A Sbjct: 65 YILMDYDTGVILAEKNADQPLPPASLTKMMTSHIIEKKLMSGEMKETDPVLMTESAWCRG 124 Query: 87 -----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 Y P N S +D L+ +I++S ND + A+AE + +E F Q MN Sbjct: 125 TSDQSCMYVPVNK-----SAPAID-MLRGIIIQSGNDASKAMAEHIAGSESAFAQIMNAE 178 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LG++ THF+NA G+ GH +ARD+AILS I Y + K Sbjct: 179 AKALGMTNTHFVNATGMPDEGHRASARDLAILSRAIIKQGGDYYKLYSEKEFTYNNITQG 238 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + T DG+KTG T A+G+ + AS+ + D LI+VI+G+ R S LL+ Sbjct: 239 NRNALLRTDPTVDGLKTGHTDAAGYCLAASSKRNDMRLISVIMGSKSMQARADQSRELLN 298 Query: 262 MGF 264 GF Sbjct: 299 WGF 301 >gi|56460065|ref|YP_155346.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR] gi|56179075|gb|AAV81797.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR] Length = 385 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 151/296 (51%), Gaps = 16/296 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D TG V+AEN PASLTK+MT+Y++ + + +T+S+NA Sbjct: 37 YILIDHTTGKVLAENNSRESLPPASLTKMMTSYIIGKEMLAGRISEKDIVTVSENAWAKN 96 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G +++ + +I+ S ND VA+AE + +E F MNN ++ +G+ Sbjct: 97 FPESSKMFIEVGKEVSVKELNRGIIISSGNDACVAMAEHIAGSEDAFAGLMNNYAEQIGM 156 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 +HF N+HG+ Y +ARDMA L+ + + P + K K N N Sbjct: 157 KDSHFANSHGLPDSEQYVSARDMATLASALINETPDEYKLYSEKSFTYNNIKQYNRNSLL 216 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W L DG+KTG T +G+++V+SA++ LIAV++G R S LL+ GF Sbjct: 217 W--DRSLNVDGIKTGHTNEAGYSLVSSAVEDGTRLIAVVMGTNSEQARKVESKKLLNYGF 274 Query: 265 -YNKTDR---KKINYIIKDFYQQNLSNEVPNISEEVCTT----QKEIINYNTQMKE 312 Y +T + ++I + + +L ISE+V T Q++ + N ++ E Sbjct: 275 RYFETVKAYSAGESFISQRIWGGDLDEVELGISEDVVITLPKGQRDKLKANFELDE 330 >gi|168184531|ref|ZP_02619195.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|237795263|ref|YP_002862815.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4 str. 657] gi|182672360|gb|EDT84321.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|229263748|gb|ACQ54781.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4 str. 657] Length = 407 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D+AI+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDIAIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] Length = 385 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH1134] gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH1134] gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 385 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAF 273 >gi|237809572|ref|YP_002894012.1| Beta-lactamase [Tolumonas auensis DSM 9187] gi|237501833|gb|ACQ94426.1| Beta-lactamase [Tolumonas auensis DSM 9187] Length = 413 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 9/241 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D N+G ++ + PASLTK+MT+YV+ LK + T +TIS+NA Sbjct: 62 HLLMDYNSGQILVGENTEERLPPASLTKMMTSYVIGQELKSGRIKPTDMVTISQNAWAKN 121 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y S+ F + G +++DN K +I++S ND +A+AE + +E F MN + LG+ Sbjct: 122 YGDSSKMFIEVGKQVSVDNLNKGIIIQSGNDACIAMAEHIAGSEDSFASLMNQWAAKLGM 181 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 S +HF+NAHG+ HY+TA DMA + + D P + K G N N Sbjct: 182 SNSHFVNAHGLHNVDHYSTAHDMARMGQALIRDLPNEYAIYSQKDFTFNGITQHNRNRLL 241 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMG 263 W L DG+KTG G+N+VASA + LI+VI+G+ R + S LL+ G Sbjct: 242 W--DKTLVVDGIKTGHVSEVGYNLVASATGPEGMRLISVIIGSNSEQQRAEESKKLLTYG 299 Query: 264 F 264 F Sbjct: 300 F 300 >gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus G9842] gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus G9842] gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAF 284 >gi|254562080|ref|YP_003069175.1| penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens DM4] gi|254269358|emb|CAX25324.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens DM4] Length = 403 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L+D ++G V+ E D P++PAS+ KLMTA +VF +KE + + + T++++A Sbjct: 29 LIDADSGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDSEFTVTEDAWRRGGA 88 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +S F + S + L + L+ LIV+S ND A+ IAE++ TE F MN +K +GL Sbjct: 89 GGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKEIGL 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F NA G TARDMA ++ + +P++ + + K N N + Sbjct: 149 TRSTFRNATGYSAPDQKVTARDMARIAQHLIDTYPEFYKIYSEREFTWNRIKQQNRNPLL 208 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG+ SG+ + SA+Q Q LI V+ G R + ++ GF Sbjct: 209 TLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMMEWGF 265 >gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 396 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 396 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] Length = 385 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|163738564|ref|ZP_02145978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] gi|161387892|gb|EDQ12247.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis BS107] Length = 396 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 22/232 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD T V+ D PAS++KLMT YV F +++ + L + +S++A Y Sbjct: 41 VLDQETDTVLLAKNADLALPPASMSKLMTLYVAFEAIRDGRLTLDERLPVSEHAMSY--- 97 Query: 93 NSTFKKGSTMTL--------DNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTS 142 KGSTM L ++ L+ +IV S ND V +AE+L TE F ++M + Sbjct: 98 -----KGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTKRA 152 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +G+ + F N++G GH + D+AIL+ ++ DFPQY F + E G+ N Sbjct: 153 QEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQYYPLFAEREFEFDGRAPSN 212 Query: 203 T---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N +G +GADG+KTG T +G+ +V SA QGD+ +I VI G LD T Sbjct: 213 VRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVIFVITG-LDSTT 263 >gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 396 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|148981388|ref|ZP_01816384.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145960880|gb|EDK26210.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 278 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YV+ L+ L + IS+NA Sbjct: 44 FVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVIGQELERGNINLNDDVVISENAWAKN 103 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ ++ + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFVEVGTTVKVEELNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF N HG+ Y+T DMA+L + D P + K G N N Sbjct: 164 KDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRIYSQKKFTYNGITQYNRNGLL 223 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W + DG+KTG T +G+++V+SA +G L+AV++G + N R S LLS Sbjct: 224 W--DKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKNANARKTESKKLLS 278 >gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 385 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|296134797|ref|YP_003642039.1| Beta-lactamase [Thiomonas intermedia K12] gi|295794919|gb|ADG29709.1| Beta-lactamase [Thiomonas intermedia K12] Length = 413 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 10/264 (3%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 AML+ + P A + + ++D +G ++AE+ PASLTKLMTAY+ F LK Sbjct: 51 AMLATVPPPKLDARS-----WLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALK 105 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 E L +T SK A + S +++++ L +IV+S ND A+ +A+++ + Sbjct: 106 EGTIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGS 165 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQ 189 FV MN ++ GL THFM+ G+ GH+TTA D++I++ I DFP Y YF+ Sbjct: 166 VSAFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFK 225 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILG 245 +K PN + T DGMKTG+T +G+ ++ SA + G + L+ V++G Sbjct: 226 VKEFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSAQRQFPNGPRRLLTVVMG 285 Query: 246 ALDRNTRNKVSASLLSMGFYNKTD 269 R + S LL+ + N D Sbjct: 286 TPTERARGEESQVLLNWAYQNFDD 309 >gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus B4264] gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus B4264] Length = 396 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|163743049|ref|ZP_02150432.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis 2.10] gi|161383732|gb|EDQ08118.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis 2.10] Length = 396 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 22/232 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD T V+ D PAS++KLMT YV F +++ + L + +S++A Y Sbjct: 41 VLDQETDTVLLAKNADLALPPASMSKLMTLYVAFEAIRDGRLTLDERLPVSEHAMSY--- 97 Query: 93 NSTFKKGSTMTL--------DNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTS 142 KGSTM L ++ L+ +IV S ND V +AE+L TE F ++M + Sbjct: 98 -----KGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTKRA 152 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +G+ + F N++G GH + D+AIL+ ++ DFPQY F + E G+ N Sbjct: 153 QEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQYYPLFAEREFEFDGRAPSN 212 Query: 203 T---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N +G +GADG+KTG T +G+ +V SA QGD+ +I VI G LD T Sbjct: 213 VRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVIFVITG-LDSTT 263 >gi|28211200|ref|NP_782144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28203640|gb|AAO36081.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 395 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 9/240 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L++ N+G +I E + PAS+TK+MT + + K LT IT+S+NA + Sbjct: 46 LMEPNSGKIIYEKNANEKLPPASVTKIMTMLIAMEAVDSGKIKLTDKITVSENAKKNGQG 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G T++ LK + + S ND A A+AE L +E+ FV+ MN+ +K LG+ Sbjct: 106 GNSSMLLDTGEIRTVEEILKGIAIASGNDAATAMAEYLDGSEEAFVKTMNDRAKALGMKN 165 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTN 204 T+F N G+ + GH TTA D+A++S + P + Y I +G+K P N N Sbjct: 166 TNFKNCSGLPEEGHITTAYDIALMSKEL-LKHPTILKYTGTYMETISEGRKSPIGLVNHN 224 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V F G DG+KTG+T + + I A+A++ ++ VI+GA + RNK +++L++ GF Sbjct: 225 KLVRFFKGCDGLKTGYTSEAKYCISATAVRDGVRVLTVIMGAPNYKIRNKEASNLMNYGF 284 >gi|319645178|ref|ZP_07999411.1| DacF protein [Bacillus sp. BT1B_CT2] gi|317392987|gb|EFV73781.1| DacF protein [Bacillus sp. BT1B_CT2] Length = 395 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 8/312 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L E K + + S+ A+ S Sbjct: 47 LIERDTGKVMYDKNSREKLPPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + + S ND +VA+AE + +E++FV+ MN + LGL T F Sbjct: 107 QIFLEPGEEMTVEDMLKGIAIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSF 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ + GHY+TA DMA+++ + + ++ ++ E KK+ NTN + Sbjct: 167 QNTTGLPEEGHYSTAYDMALMAKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIK 226 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YN 266 + G DG+KTGFT + + + ASA +G+ +IAV+ GA RN +L F Y Sbjct: 227 FYPGVDGVKTGFTNEAKYCLTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYE 286 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 K N II D + N+ SE + K+ N + KE K KE + Sbjct: 287 THPMYKRNEIISDLKVNKGREQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVK 346 Query: 325 KITLLKNKITKK 336 K T L + KK Sbjct: 347 KGTELGTLVLKK 358 >gi|78067705|ref|YP_370474.1| penicillin-binding protein 6 [Burkholderia sp. 383] gi|77968450|gb|ABB09830.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia sp. 383] Length = 437 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ + LG+ Sbjct: 144 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAARLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKEGERTQDSMKMLNY 323 Query: 263 GF 264 G+ Sbjct: 324 GY 325 >gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 385 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 396 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] Length = 385 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH187] gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH187] gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 396 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] Length = 385 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|207727766|ref|YP_002256160.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum MolK2] gi|206591007|emb|CAQ56619.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum MolK2] Length = 398 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 11/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA---MLTTPITISKNAS 87 + L D +G V+ D PASLTKLMTAY+ F +++ K L TP T S Sbjct: 45 WMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITP-TESVRTV 103 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN ++ LG+ Sbjct: 104 KTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K PN N + Sbjct: 164 KNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQG-DQSLIAVILGALDRNTRNKVSASLL 260 DG KTG T ++G+ +V SA + G + L++VI+G R + S +L Sbjct: 224 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVL 283 Query: 261 SMGF 264 + G+ Sbjct: 284 NYGY 287 >gi|148379819|ref|YP_001254360.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|153934177|ref|YP_001384117.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|153937458|ref|YP_001387657.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. Hall] gi|148289303|emb|CAL83399.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|152930221|gb|ABS35721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|152933372|gb|ABS38871.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. Hall] Length = 407 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames] gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0488] gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0442] gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0193] gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0465] gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0389] gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0174] gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis Tsiankovskii-I] gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W] gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus NVH0597-99] gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB108] gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH820] gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB102] gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. CDC 684] gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0248] gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. CNEVA-9066] gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055] gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Western North America USA6153] gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger B] gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Vollum] gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Australia 94] gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. Ames] gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. 'Ames Ancestor'] gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0488] gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0193] gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0442] gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0389] gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0465] gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0174] gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis Tsiankovskii-I] gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W] gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB108] gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus NVH0597-99] gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH820] gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB102] gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. CDC 684] gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0248] gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 396 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|237734435|ref|ZP_04564916.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7] gi|229382665|gb|EEO32756.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7] Length = 390 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 154/294 (52%), Gaps = 21/294 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+ ++ + + PAS TK+MT ++F L+ KK IT SK A+ S Sbjct: 46 LIEANSRQILYDKNAEEKLYPASTTKIMTMILMFEALRNKKISFDDEITTSKYAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G +++L + K + + SAND +VA+AE + + KFV+ MN+ +K LGL THF Sbjct: 106 QVYLEVGESLSLKDMFKSIAIASANDASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHF 165 Query: 153 MNAHGVVQHGHYTTARDMAILS-----------WRIKTDFPQYMHYFQIKGLEIKGKKYP 201 NA G+ HYT A D+AI++ + + + + Y+ + + Sbjct: 166 KNATGLHDPDHYTCAHDLAIMAAYLIEIGGEDLFAVTSLYDSYIREDTKQSFWL-----V 220 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + + G DG+KTG+T +G+ +V +A + Q +I V++ TRN+ SLL Sbjct: 221 NTNKLLKLYNGVDGLKTGYTKEAGYCLVTTAQRDGQRIIGVLMKETAPKTRNEEMCSLLD 280 Query: 262 MGFYNKTDRKKINYIIKD-FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 GF N K++ KD +Q+L +++ N++ +V +K+I+ + +AK Sbjct: 281 YGFNN---YKQVTIFKKDTLIEQHLVDKMDNLTIDV-KCKKDIVYTKAKSADAK 330 >gi|52786237|ref|YP_092066.1| DacF [Bacillus licheniformis ATCC 14580] gi|163119526|ref|YP_079656.2| penicilin binding protein [Bacillus licheniformis ATCC 14580] gi|52348739|gb|AAU41373.1| DacF [Bacillus licheniformis ATCC 14580] gi|145903033|gb|AAU24018.2| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus licheniformis ATCC 14580] Length = 390 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 8/312 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L E K + + S+ A+ S Sbjct: 42 LIERDTGKVMYDKNSREKLPPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + + S ND +VA+AE + +E++FV+ MN + LGL T F Sbjct: 102 QIFLEPGEEMTVEDMLKGIAIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ + GHY+TA DMA+++ + + ++ ++ E KK+ NTN + Sbjct: 162 QNTTGLPEEGHYSTAYDMALMAKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIK 221 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YN 266 + G DG+KTGFT + + + ASA +G+ +IAV+ GA RN +L F Y Sbjct: 222 FYPGVDGVKTGFTNEAKYCLTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYE 281 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 K N II D + N+ SE + K+ N + KE K KE + Sbjct: 282 THPMYKRNEIISDLKVNKGREQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVK 341 Query: 325 KITLLKNKITKK 336 K T L + KK Sbjct: 342 KGTELGTLVLKK 353 >gi|157145043|ref|YP_001452362.1| D-alanyl-D-alanine carboxypeptidase [Citrobacter koseri ATCC BAA-895] gi|157082248|gb|ABV11926.1| hypothetical protein CKO_00774 [Citrobacter koseri ATCC BAA-895] Length = 420 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 143/304 (47%), Gaps = 35/304 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG ++ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 71 WVLMDYTTGQILTAGNEHQRRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 128 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 129 KDNPVFVGSSLMFLKQGERVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNHYV 188 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 189 ETLKLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 248 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++AS++ G + LIAV++GA R + L Sbjct: 249 RNGLLW--DKTMNIDGLKTGHTSGAGFNLIASSVDGQRRLIAVVMGAESAKGREDQARKL 306 Query: 260 LSMGFYN-----------KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTT 299 L G N + ++I Y K DF+ E+P+I Sbjct: 307 LQWGQQNFDTVQILRSGKQVGTERIWYGDKENIALGTEQDFWMALPKTEIPHIKARYALD 366 Query: 300 QKEI 303 +KE+ Sbjct: 367 KKEL 370 >gi|167755687|ref|ZP_02427814.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402] gi|167704626|gb|EDS19205.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402] Length = 379 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 154/294 (52%), Gaps = 21/294 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+ ++ + + PAS TK+MT ++F L+ KK IT SK A+ S Sbjct: 35 LIEANSRQILYDKNAEEKLYPASTTKIMTMILMFEALRNKKISFDDEITTSKYAASMGGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G +++L + K + + SAND +VA+AE + + KFV+ MN+ +K LGL THF Sbjct: 95 QVYLEVGESLSLKDMFKSIAIASANDASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHF 154 Query: 153 MNAHGVVQHGHYTTARDMAILS-----------WRIKTDFPQYMHYFQIKGLEIKGKKYP 201 NA G+ HYT A D+AI++ + + + + Y+ + + Sbjct: 155 KNATGLHDPDHYTCAHDLAIMAAYLIEIGGEDLFAVTSLYDSYIREDTKQSFWL-----V 209 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + + G DG+KTG+T +G+ +V +A + Q +I V++ TRN+ SLL Sbjct: 210 NTNKLLKLYNGVDGLKTGYTKEAGYCLVTTAQRDGQRIIGVLMKETAPKTRNEEMCSLLD 269 Query: 262 MGFYNKTDRKKINYIIKD-FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 GF N K++ KD +Q+L +++ N++ +V +K+I+ + +AK Sbjct: 270 YGFNN---YKQVTIFKKDTLIEQHLVDKMDNLTIDV-KCKKDIVYTKAKSADAK 319 >gi|192360123|ref|YP_001981301.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus Ueda107] gi|190686288|gb|ACE83966.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus Ueda107] Length = 405 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 124/234 (52%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG +IAE + PASLTK+M++Y++ L++ + T + IS A + Sbjct: 59 YILVDATTGSIIAEFNAEQKLPPASLTKMMSSYLIVDELEKGRYQEQTLVPISVKAWQMG 118 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G+ + L + L+ +I++S ND VA+AE E FV MN + LG+ T Sbjct: 119 GSRMFVKEGTQVPLIDLLRGVIIQSGNDATVALAEYHSGNEDAFVDRMNQKAAELGMVNT 178 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G GH TTA+D+AIL+ I D P Y K + N N + Sbjct: 179 HFENSSGWPAEGHLTTAKDLAILARAIINDHPIYYPLHAEKYFVYNDIRQRNRNELLFRD 238 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ +VAS+ + + LIAV++G + R + LL+ GF Sbjct: 239 ETVDGLKTGHTEEAGYCLVASSKRENTRLIAVVMGTANEKARAAETQKLLAYGF 292 >gi|262040030|ref|ZP_06013292.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042607|gb|EEW43616.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 389 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 15/247 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ K+A + Sbjct: 40 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTMGKDA--WA 97 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K G +++ + + LIV S ND VA+A+ + + +FV MN Sbjct: 98 KGNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYV 157 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G +++A D+A+LS I P H + K L G N Sbjct: 158 EKLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQN 217 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + DG+KTG T +GFN++ASA+ G + LIAV++GA R + +A L Sbjct: 218 RNGLLWD--KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKL 275 Query: 260 LSMGFYN 266 L G N Sbjct: 276 LHWGQQN 282 >gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 396 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis str. Al Hakam] gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] Length = 398 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A+ S Sbjct: 51 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGS 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 111 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 170 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 171 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 230 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 286 >gi|170757721|ref|YP_001781407.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str. Okra] gi|169122933|gb|ACA46769.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1 str. Okra] Length = 407 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|125972794|ref|YP_001036704.1| penicillin-binding protein 6 [Clostridium thermocellum ATCC 27405] gi|256004983|ref|ZP_05429955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|125713019|gb|ABN51511.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Clostridium thermocellum ATCC 27405] gi|255991052|gb|EEU01162.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316940970|gb|ADU75004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 384 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 122/234 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D P PAS+TK+MT + F L++ + IS+ A S Sbjct: 40 LIEASTGQVLYEKNADVPMPPASITKIMTLLLGFEALEKGLVKWDDEVIISEKAWRMEGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + + V SAND VA+AE L +E+ FVQ MN +K LGL+ T+F Sbjct: 100 KMFLLVGDKAKFGEIMTGISVVSANDGCVALAEHLYGSEEAFVQVMNTRAKELGLTNTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N++G+ GH +ARD++ L+ + ++P+ + + N N +G F G Sbjct: 160 ANSNGLPAEGHVMSARDISTLARYLIQNYPKILELESTTEYTYNNIRQFNRNPLLGVFPG 219 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G+ IV +A Q Q +I V+L R+K LL+ GF N Sbjct: 220 ADGLKTGWTEEAGYCIVGTAQQNGQRMIGVVLKTSSEKERSKAIQELLNYGFKN 273 >gi|83746894|ref|ZP_00943941.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551] gi|207742170|ref|YP_002258562.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum IPO1609] gi|83726479|gb|EAP73610.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551] gi|206593558|emb|CAQ60485.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum IPO1609] Length = 398 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 11/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA---MLTTPITISKNAS 87 + L D +G V+ D PASLTKLMTAY+ F +++ K L TP T S Sbjct: 45 WMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITP-TESVRTV 103 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN ++ LG+ Sbjct: 104 KTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K PN N + Sbjct: 164 KNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQG-DQSLIAVILGALDRNTRNKVSASLL 260 DG KTG T ++G+ +V SA + G + L++VI+G R + S +L Sbjct: 224 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVL 283 Query: 261 SMGF 264 + G+ Sbjct: 284 NYGY 287 >gi|116690911|ref|YP_836534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia HI2424] gi|170734237|ref|YP_001766184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia MC0-3] gi|116649000|gb|ABK09641.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia HI2424] gi|169817479|gb|ACA92062.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia MC0-3] Length = 436 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S Sbjct: 83 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ + LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 203 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKMLNY 322 Query: 263 GF 264 G+ Sbjct: 323 GY 324 >gi|253576351|ref|ZP_04853681.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844244|gb|EES72262.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 396 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG VI E PAS+TK+MT + + LT +T S+ A+ S Sbjct: 48 LIDADTGTVIYEKKSHEKLPPASITKIMTMLLTMEAIDNGTLKLTDKVTTSEYAASMGGS 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TMT+D LK + + S ND +VA+AE + +EK FV+ MN ++ LGL THF Sbjct: 108 QIFLEPGETMTVDELLKGVAMASGNDASVALAEKIAGSEKAFVKMMNERAQQLGLKDTHF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKYP----NTNWA 206 N +G+ HY++A D+AI+S + + +Y +Q +G + P NTN Sbjct: 168 ANCNGLPVADHYSSAYDIAIMSRELLKHEEITKYTGAYQ--DYLRQGTEKPFWLVNTNKL 225 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + GADG+KTG+T + F + A+A + LIAV+LG + TRN +++ F Sbjct: 226 VRFYSGADGLKTGYTSEAKFCLAATAKRDGLRLIAVVLGEPNTKTRNSEVSAMFDYAF 283 >gi|170704053|ref|ZP_02894691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria IOP40-10] gi|170131039|gb|EDS99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria IOP40-10] Length = 368 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + IT S+ Sbjct: 15 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRVG 74 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 75 LDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGMK 134 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 135 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 194 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R + S +L+ Sbjct: 195 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKMLNY 254 Query: 263 GF 264 G+ Sbjct: 255 GY 256 >gi|254247085|ref|ZP_04940406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia PC184] gi|124871861|gb|EAY63577.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia PC184] Length = 436 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S Sbjct: 83 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ + LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 203 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKMLNY 322 Query: 263 GF 264 G+ Sbjct: 323 GY 324 >gi|84686497|ref|ZP_01014390.1| D-alanyl-D-alanine carboxypeptidase [Maritimibacter alkaliphilus HTCC2654] gi|84665410|gb|EAQ11887.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2654] Length = 401 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 5/261 (1%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + + + Y L TNT V+ E P PAS++KLMT ++F L++ + L Sbjct: 21 LPAFAFETSARSAYVVDLTTNT--VLLEKNAQVPLPPASMSKLMTLNMLFEALEDGRVSL 78 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T +S+ A + S T++ +K +IV S ND V +AE L TE F Sbjct: 79 DTQFNVSQRAMDMGGSTMFLTTQDRPTVEELIKGIIVLSGNDACVVVAEGLGGTEDAFAS 138 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M ++ LG+ + F NA G + D+AIL+ R+ +FPQY HYF I+ Sbjct: 139 MMTQRARALGMENSTFGNASGWPHPAQRMSTEDLAILAERLIEEFPQYYHYFGIEEFPYD 198 Query: 197 GKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G+ N N LGADG+KTG T +G+ +V SA+QG++ ++ V+ G R Sbjct: 199 GRAPDNRFNRNPLFDLGLGADGLKTGHTQEAGYGLVGSAMQGNRRVVLVVSGLDSEAARR 258 Query: 254 KVSASLLSMGFYNKTDRKKIN 274 SA++++ F R + Sbjct: 259 SESAAIINFAFRQFVMRTAVE 279 >gi|281416991|ref|ZP_06248011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|281408393|gb|EFB38651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 384 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 122/234 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D P PAS+TK+MT + F L++ + IS+ A S Sbjct: 40 LIEASTGQVLYEKNADVPMPPASITKIMTLLLGFEALEKGLVKWDDEVIISEKAWRMEGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + + V SAND VA+AE L +E+ FVQ MN +K LGL+ T+F Sbjct: 100 KMFLLVGDKAKFGEIMTGISVVSANDGCVALAEHLYGSEEAFVQVMNTRAKELGLTNTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N++G+ GH +ARD++ L+ + ++P+ + + N N +G F G Sbjct: 160 ANSNGLPAEGHVMSARDISTLARYLIQNYPKILELESTTEYTYNNIRQFNRNPLLGVFPG 219 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G+ IV +A Q Q +I V+L R+K LL+ GF N Sbjct: 220 ADGLKTGWTEEAGYCIVGTAQQNGQRMIGVVLKTSSEKERSKAIQELLNYGFKN 273 >gi|325519264|gb|EGC98711.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. TJI49] Length = 354 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 131/242 (54%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 1 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 60 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 61 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 121 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++AS+ + G + L++V++G + R + S +L+ Sbjct: 181 LDPTVDGLKTGHTQAAGYCLIASSKRAIPGSDGQRRLVSVMMGEQKESDRTQDSMKMLNY 240 Query: 263 GF 264 G+ Sbjct: 241 GY 242 >gi|297180033|gb|ADI16258.1| d-alanyl-d-alanine carboxypeptidase [uncultured bacterium HF0010_16H03] Length = 384 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 124/237 (52%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L Y L++ NT VIAE PAS+TK+MT+YVV + L + IS+ A Sbjct: 28 LKSYILIEPNTNTVIAEFNSSSEIEPASMTKIMTSYVVADQIANGLISLEDQVLISEKAW 87 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + G +++ N LK +I++S ND +VAI+E TE+ FV MN + +LG+ Sbjct: 88 RMGGSKMFIEAGKKVSISNLLKGIIIQSGNDASVAISEYAGGTERGFVDLMNAYADSLGM 147 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N+ G+ H+++A+D+A L+ FP ++ K K N N + Sbjct: 148 NNTIFQNSTGLPDENHFSSAKDLATLTSNFIIKFPDIYSLYKEKQFTFNNIKQLNRNKLL 207 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +DG+KTG T A+G+ +V SA +GD LI V+ G+ N R S LL GF Sbjct: 208 WRDESSDGVKTGHTEAAGYCLVGSAKRGDMRLITVVAGSDTDNNRFLASQRLLEYGF 264 >gi|262372977|ref|ZP_06066256.1| penicillin-binding protein 6 [Acinetobacter junii SH205] gi|262313002|gb|EEY94087.1| penicillin-binding protein 6 [Acinetobacter junii SH205] Length = 382 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +ST T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 RGSSTESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRV 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THF+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMVNTHFINSTGMPADGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G N R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTEEAGYCLTTSSKRGPMRLISVIFGTPSMNERASQTRTLLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|226331025|ref|ZP_03806543.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198] gi|225201820|gb|EEG84174.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198] Length = 367 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ ++ K + + I + A + Sbjct: 13 YILIDYNSGKVLAEMNADVRRDPASLTKMMTSYVIGQSIRAGKISNSDIVPIGEEA--WA 70 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F+ S M L ++ + ++S ND VA+A + ++ FV MN+ Sbjct: 71 TGNPIFRGSSLMFLKPGDQVTVAQLTRGINLQSGNDACVAMASYVAGSQDTFVAMMNDYV 130 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL T F HG+ G Y+TARDMA++ + D P ++ K + N Sbjct: 131 KRLGLQNTQFQTVHGLDAPGQYSTARDMALIGAALIRDVPDEYAIYKEKEYTYNNIRQTN 190 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W T L DG+KTG T ++G+N+VASA +G+ LI+ ++G R+ S L Sbjct: 191 RNGLLWD--TSLNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGHSPKGRDVESKKL 248 Query: 260 LSMGF 264 L+ GF Sbjct: 249 LTWGF 253 >gi|150390291|ref|YP_001320340.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149950153|gb|ABR48681.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 387 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 7/240 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PAS+TK+MT + L + L + +S+ AS + Sbjct: 41 LIDAATGEVLYEKNIHESLPPASVTKIMTMLLTMEALDTNRITLNDKVVVSERASSMGGT 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++ +K + ++SAND VAI E + +E FVQ MN +K LG+ T F Sbjct: 101 QLYLEPGEVKTVEELMKGIAIRSANDACVAIGEHISGSEDAFVQKMNERAKELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ------IKGLEIKGKKYPNTNWA 206 +N +G+ GH T+ D+A++S + +P + + G ++ NTN Sbjct: 161 INTNGLPAEGHVTSVYDIALMSKEL-LKYPDVQKWLTTWMDTVVVGKRESTQELVNTNRL 219 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + T+ GA G+KTGFT A+ + ASA +G+ + IAV+L A R +A LL GF N Sbjct: 220 IRTYKGATGLKTGFTQAALHCLSASATRGNNTFIAVVLAAPTSQVRFSEAAQLLDFGFAN 279 >gi|17987273|ref|NP_539907.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|23501872|ref|NP_697999.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161618945|ref|YP_001592832.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|163843260|ref|YP_001627664.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225627469|ref|ZP_03785506.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|225852496|ref|YP_002732729.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|254689222|ref|ZP_05152476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254693707|ref|ZP_05155535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|254701743|ref|ZP_05163571.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254704285|ref|ZP_05166113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|254706813|ref|ZP_05168641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710077|ref|ZP_05171888.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|254730255|ref|ZP_05188833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256031573|ref|ZP_05445187.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256044652|ref|ZP_05447556.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256113538|ref|ZP_05454364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256257472|ref|ZP_05463008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256264013|ref|ZP_05466545.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|256369413|ref|YP_003106921.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260168704|ref|ZP_05755515.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99] gi|260563998|ref|ZP_05834484.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260566468|ref|ZP_05836938.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260754727|ref|ZP_05867075.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260757950|ref|ZP_05870298.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260883748|ref|ZP_05895362.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261213979|ref|ZP_05928260.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261314280|ref|ZP_05953477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317626|ref|ZP_05956823.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261752296|ref|ZP_05996005.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261754953|ref|ZP_05998662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|261758181|ref|ZP_06001890.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265988661|ref|ZP_06101218.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|265991076|ref|ZP_06103633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265994911|ref|ZP_06107468.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|297248317|ref|ZP_06932035.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Brucella abortus bv. 5 str. B3196] gi|17982950|gb|AAL52171.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|23347810|gb|AAN29914.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161335756|gb|ABX62061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|163673983|gb|ABY38094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225617474|gb|EEH14519.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|225640861|gb|ACO00775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|255999573|gb|ACU47972.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260154014|gb|EEW89106.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260155986|gb|EEW91066.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260668268|gb|EEX55208.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260674835|gb|EEX61656.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260873276|gb|EEX80345.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260915586|gb|EEX82447.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261296849|gb|EEY00346.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303306|gb|EEY06803.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261738165|gb|EEY26161.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742049|gb|EEY29975.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261744706|gb|EEY32632.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|262766024|gb|EEZ11813.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263001860|gb|EEZ14435.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263094156|gb|EEZ18078.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|264660858|gb|EEZ31119.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|297175486|gb|EFH34833.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Brucella abortus bv. 5 str. B3196] gi|326409012|gb|ADZ66077.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] gi|326538722|gb|ADZ86937.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 396 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|262277220|ref|ZP_06055013.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114] gi|262224323|gb|EEY74782.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114] Length = 378 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 170/326 (52%), Gaps = 23/326 (7%) Query: 17 FPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 F F+S+ ET+ Y L+D +G V+ E + +PAS+TK+MTA V F +K+ Sbjct: 10 FLFISVKSSALETSAKQAY-LIDVLSGEVLFEKNKEQKISPASITKIMTAIVAFDLIKKG 68 Query: 73 KAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 L +SKNA S S+ ++++N LK +I+ S ND +A+AE + Sbjct: 69 DLKLEEKFKVSKNAWRMSSKGFSSMFIMPNDRVSVENLLKGIIIVSGNDACIALAEGIAG 128 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYF 188 TE++FV MNN ++ +GLS T F N+ G+ +Y+T D++ +S + +FP Y +Y Sbjct: 129 TEEEFVNMMNNMAEKIGLSNTRFANSSGIYDGNNYSTVEDISKMSIYLINNFPNLYKYYS 188 Query: 189 QIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + K + P N N + +G DG+KTG+ SG+++ A+ + D+ +++V+ Sbjct: 189 EKKFTWDRTGGAPITQGNRNPILYKDMGGDGIKTGYLNNSGYSLAATIKKNDRRILSVVS 248 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 G +N R++ + LLS N+ D KIN I K++ ++ + + T Q E+ Sbjct: 249 GTDSKNARSRETVRLLSYA-ENRFDLLKINKIDKNY-------KIKTWNLKQKTVQLELK 300 Query: 305 N--YNTQMKEAKDKESHFIDFEKITL 328 N Y T K K+K ID EK L Sbjct: 301 NNIYLTIPKRKKNKLKIEIDHEKDIL 326 >gi|148559355|ref|YP_001258933.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|148370612|gb|ABQ60591.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] Length = 396 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|284007887|emb|CBA73817.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Arsenophonus nasoniae] Length = 402 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G V+ N PD +PASLTK+MT+YVV +K K + +T+ ++A + Sbjct: 44 YVLMDYHSGKVLTANNPDERLDPASLTKIMTSYVVGQAIKAGKISVNDLVTVGEDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N S M L ++ ++++S ND +A+A+ + ++ FV MN Sbjct: 102 TGNPVLHGSSLMFLKPGDRVSVLDLNRGIVIQSGNDACIALADYVAGSQTVFVDLMNQYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYP 201 +LGL THF HG+ G ++TA DMAIL+ + D P +Y+ + + K K++ Sbjct: 162 TSLGLKNTHFKTVHGLDSEGQFSTAHDMAILTQALIRDVPDEYLLHGEKVFTYNKIKQFN 221 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 L DG+KTG T +G+N++ SA G LIAV+LGA R S LL+ Sbjct: 222 RNRLLWSKNLQVDGVKTGHTSGAGYNLITSATNGPMRLIAVVLGAGSDRIRFTESEKLLN 281 Query: 262 MGF 264 GF Sbjct: 282 WGF 284 >gi|332970912|gb|EGK09888.1| D-alanyl-D-alanine carboxypeptidase DacA [Psychrobacter sp. 1501(2011)] Length = 412 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 9/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG ++AE D P PASLTK+MT++++ L + P+ +S+NA Sbjct: 64 YILMDYDTGAILAEKNADQPLPPASLTKMMTSHIIEKKLMSGELKEDEPVIMSENAWCRG 123 Query: 91 PSNST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S+ + K S + + L+ +I++S ND + A+AE + +E+ F Q MN +K Sbjct: 124 TSDQSCMYVPVHKSASVIDM---LRGIIIQSGNDASKAMAEHIAGSEQAFAQLMNAEAKE 180 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG++ T+F+NA G+ H+ +ARD+AIL+ I Y + K N N Sbjct: 181 LGMTNTNFVNATGMPDENHHASARDLAILARAIIKQGGDYYKIYSEKEFTYNNITQGNRN 240 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + T DG+KTG T A+G+ + AS+++ D LI+VI+G+ R S LL+ GF Sbjct: 241 ALLRTDPTVDGLKTGHTDAAGYCLAASSLRNDMRLISVIMGSKSMQARADQSRELLNWGF 300 >gi|254518746|ref|ZP_05130802.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] gi|226912495|gb|EEH97696.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] Length = 401 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 133/246 (54%), Gaps = 7/246 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G ++ E D + PAS+TK+MT + + K L +T S+NA + S Sbjct: 55 LIEPKSGKILYEKNIDEKFAPASVTKIMTMLLTMEAVDSGKITLQDKVTCSENAKKMGGS 114 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L TE FV+ MN ++ LG+ T F Sbjct: 115 TMLLDTGEIRTVEELIKGVAIASGNDAAVALAEYLGGTEDAFVEMMNKRAQELGMVNTTF 174 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ GH +TARD++I+S + P + Y I I +G+K P N N V Sbjct: 175 KNCNGLPIEGHLSTARDISIMSLEL-LKHPTILKYSGIYMETISEGRKSPIELVNHNKLV 233 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTG+T + + I A+A + +++VI+GA RN+ + LL+ GF +K Sbjct: 234 RFFEGCDGLKTGYTEEAKYCISATATRNGVRMLSVIMGAPTYKVRNRDAGMLLNYGF-SK 292 Query: 268 TDRKKI 273 + KK+ Sbjct: 293 FEGKKL 298 >gi|300692700|ref|YP_003753695.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum PSI07] gi|299079760|emb|CBJ52436.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum PSI07] Length = 397 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 13/245 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNA 86 + L D +G V+ D PASLTKLMTAY+ F +++ K M+T T+ Sbjct: 44 WMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAFEAVRDGKLKYDQMVTPTETVRSVK 103 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ S + G + L+ LIV+S ND A+ +AE++ TE FV MN ++ LG Sbjct: 104 TDE--SRMFLQAGKPAAVRELLQGLIVQSGNDAALVLAEAVGGTEANFVMLMNREAERLG 161 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN N Sbjct: 162 MKNTHFMNAAGLPDPNHYTTARDLSILTTALIRDFPEDYKFYSQKEFTYNNIKQPNRNRL 221 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASL 259 + DG+KTG T ++G+ ++ SA + + L++V++G R + S + Sbjct: 222 LWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDMPNASRRLLSVMIGTKSEQVRTQESLKV 281 Query: 260 LSMGF 264 L+ G+ Sbjct: 282 LNYGY 286 >gi|62289915|ref|YP_221708.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82699842|ref|YP_414416.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|189024158|ref|YP_001934926.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|237815417|ref|ZP_04594415.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254697357|ref|ZP_05159185.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260545336|ref|ZP_05821077.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260761773|ref|ZP_05874116.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|62196047|gb|AAX74347.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82615943|emb|CAJ10966.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|189019730|gb|ACD72452.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|237790254|gb|EEP64464.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|260096743|gb|EEW80618.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260672205|gb|EEX59026.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] Length = 396 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFTGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|212638842|ref|YP_002315362.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212560322|gb|ACJ33377.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 387 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 13/275 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYT------LLDTNTGHVIAENYPDHPWNP 53 M++F +A+ +L P +S+ AE K+ T L++ +TG ++ E P P Sbjct: 3 MKRFFYALAIVLL--FVPIVSVHAEQPKVELATEARSAILIERDTGAILYEKNAHEPLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + + K L + S+ A+ S + G MT+D+ LK + + Sbjct: 61 ASMTKIMTMLLIMEAIDQGKLKLDERVRASEYAASMGGSQIFLEPGEEMTVDDLLKGIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE + +E+ FV MN ++ LGL T F N G+ HY+TA DMA++ Sbjct: 121 GSGNDASVALAERIAGSEEAFVHLMNEKARQLGLKHTAFENTTGLPAKNHYSTAYDMAMM 180 Query: 174 SWR-IKTDF-PQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + +K D +Y ++ E KK+ NTN V + G DG+KTG+T + + + Sbjct: 181 AKELLKYDLITKYTGTYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTSEAKYCLT 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A+A +G+ +IAV+ GA RN +L F Sbjct: 241 ATAKKGNMRVIAVVFGAPTPKARNAQITKMLDYAF 275 >gi|152976485|ref|YP_001376002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025237|gb|ABS23007.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 392 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 131/244 (53%), Gaps = 6/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 45 VIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRTSEHAASMGGS 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K LGL THF Sbjct: 105 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKRAKELGLKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 165 QNPTGLPAKNHYSTAIDMAIIAKEL-MKYPLIRKYTGKYEDYLRENTDKKFWLVNTNKLV 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 224 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNSQVTKLLDYAFGQY 283 Query: 268 TDRK 271 T +K Sbjct: 284 TTKK 287 >gi|310642625|ref|YP_003947383.1| d-ala-d-ala carboxypeptidase dacf; serine peptidase; merops family s11 [Paenibacillus polymyxa SC2] gi|309247575|gb|ADO57142.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Paenibacillus polymyxa SC2] Length = 397 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 6/241 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG VI E PAS+TK+MT + + + K LT + S+ AS S Sbjct: 51 LMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIHDGKLKLTDKVRASEYASSMGGS 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE + +E+ FV+ MN + LGL THF Sbjct: 111 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVEMMNAKVQQLGLKDTHF 170 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY---FQ--IKGLEIKGKKYPNTNWAV 207 N +G+ HY++A D+A++S R +PQ Y +Q ++ +K NTN V Sbjct: 171 ANCNGLPVENHYSSAHDIAVMS-RELLKYPQITKYTGAYQDYLRKSSVKPFWLVNTNKLV 229 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + GADG+KTG+T + F + A+A + ++AV+LG + RN +S+ F Sbjct: 230 RFYTGADGLKTGYTSEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQY 289 Query: 268 T 268 T Sbjct: 290 T 290 >gi|153940158|ref|YP_001391119.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str. Langeland] gi|152936054|gb|ABS41552.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F str. Langeland] Length = 407 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSVEGHKTSAYDISIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|71279808|ref|YP_268450.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H] gi|71145548|gb|AAZ26021.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H] Length = 399 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D TG +IAE D PASLTK+MT+Y++ L+ T + IS+ A + Sbjct: 52 FILIDYTTGKIIAEENADTQLAPASLTKIMTSYIIGKELENGNIKNTDKVMISEKAWAKK 111 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+ + + + +IV S ND VA+AE + +E F MN ++ LG+ Sbjct: 112 FPDSSKMFIEVGTEVPVSLLNQGIIVASGNDACVAMAEHIAGSESAFADLMNAHAEQLGM 171 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S++ F N+HG+ H TT RDMA L+ + + P+ ++ K K N N + Sbjct: 172 SSSFFENSHGLDSTSHMTTPRDMATLAIALIREVPEEYAIYKQKSFTYNNIKQYNRNGLL 231 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG T +G+++V SA +GD L+ V++G R S LL+ GF Sbjct: 232 WDKSLNVDGMKTGHTSNAGYSLVTSATKGDMRLVTVVMGTASERARKVESKKLLNYGF 289 >gi|256061084|ref|ZP_05451239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261325086|ref|ZP_05964283.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261301066|gb|EEY04563.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] Length = 396 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|262278233|ref|ZP_06056018.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262258584|gb|EEY77317.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 271 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 13/234 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 14 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 68 Query: 64 VVF-----SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + LK+++ + TP+ + ++ S K G +++D L LIV SAND Sbjct: 69 IALKEIKAGKLKKEEIITATPVV---SVVQWDESQMYLKAGEQISVDQLLAGLIVMSAND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L + Sbjct: 126 AAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLLGQALI 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 186 KQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTA 239 >gi|154502522|ref|ZP_02039582.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149] gi|153796918|gb|EDN79338.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149] Length = 401 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 132/263 (50%), Gaps = 17/263 (6%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D PAS+TK+MT ++F L++ K L ++ S+ A+ Sbjct: 49 PSAVLMEASTGAVLYEKDADTRRAPASVTKIMTMLLIFDALEDGKIALEDEVSTSEYAAS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G T ++D LK + V SAND A+AE + +E+ FV+ MN + LG+ Sbjct: 109 MGGSQVFLEPGETQSVDTMLKCISVASANDACTAMAEYIAGSEEAFVKMMNERAAGLGMK 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGK 198 T F N +G+ GH TTARD+A++S + +P+ Y I KG G Sbjct: 169 NTTFQNCNGLDTEGHLTTARDIALMSRELIEKYPKIHDYCMIWMDTITHTTKKGTSEFG- 227 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN V + A G+KTG T + F + A+A + LIAVIL + R + + Sbjct: 228 -LSNTNKLVRQYPYATGLKTGSTDEAKFCVSATAEKDGMELIAVILSGENSKQRFQDATK 286 Query: 259 LLSMGF-----YNKTDRKKINYI 276 LL+ GF Y D K+ I Sbjct: 287 LLNYGFGKCQVYEDNDPPKLKPI 309 >gi|53724944|ref|YP_101907.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|52428367|gb|AAU48960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] Length = 403 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 49 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 108 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 109 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 169 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 228 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 229 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 288 Query: 262 MGF 264 G+ Sbjct: 289 YGY 291 >gi|228992815|ref|ZP_04152740.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] gi|228766864|gb|EEM15502.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] Length = 386 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 6/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 39 VIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 99 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DM+I++ + +P +Y ++ E KK+ NTN V Sbjct: 159 QNPTGLPAKDHYSTAYDMSIMAKEL-MKYPLIRKYTGKYEDYLRENTEKKFWLVNTNKLV 217 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 218 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQY 277 Query: 268 TDRK 271 T +K Sbjct: 278 TTKK 281 >gi|85706300|ref|ZP_01037394.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217] gi|85669073|gb|EAQ23940.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217] Length = 387 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + D PAS++KLMT YV F ++ + L + +S++A Y S Sbjct: 32 VMDVTTGTVLLDKNADTALPPASMSKLMTLYVAFEAVRSGRLTLDERLPVSEHAMSYGGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND IAE+L TE F + M ++ +G++ + Sbjct: 92 TMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARFMTQRAQQMGMTNS 151 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F NA G GH + RD+A+L+ I DFP + F G+ N N + Sbjct: 152 MFRNASGWPAEGHVMSVRDLALLARHIIEDFPDFYKMFAETEFRFDGRAPSNINNRNPLL 211 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G +GADG+KTG T +GF + SAIQGD+ +I VI G R + S ++++ F Sbjct: 212 GLGIGADGLKTGHTEQAGFGLTGSAIQGDRRVIFVISGLATTQDRARESEAIVNWAF 268 >gi|167909308|ref|ZP_02496399.1| penicillin-binding protein 6 [Burkholderia pseudomallei 112] Length = 379 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 25 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 84 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 85 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 144 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 145 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 204 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 205 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 264 Query: 262 MGF 264 G+ Sbjct: 265 YGY 267 >gi|228998860|ref|ZP_04158445.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] gi|228760876|gb|EEM09837.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] Length = 386 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 6/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 39 VIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 99 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DM+I++ + +P +Y ++ E KK+ NTN V Sbjct: 159 QNPTGLPAKDHYSTAYDMSIMAKEL-MKYPLIRKYTGKYEDYLRENTEKKFWLVNTNKLV 217 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 218 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQY 277 Query: 268 TDRK 271 T +K Sbjct: 278 TTKK 281 >gi|255284455|ref|ZP_05349010.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255265000|gb|EET58205.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 508 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ ++G V+ E +PAS+TK+MT ++F L++ L + S +A Sbjct: 113 PSALLMEASSGTVLYEKDAHTRRSPASVTKIMTTLLIFEELEKGTLKLDDEVVTSAHAKS 172 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T+D LK ++V S ND +VA+AE + TE +FV MN + LG++ Sbjct: 173 MGGSQVFLEEGEKQTVDTLLKCILVSSGNDASVAMAEHIGGTEAEFVSRMNEKAAELGMA 232 Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF + G+ HYTTA D+A++S + T FPQ Y I +G G Sbjct: 233 DTHFEDCCGLTDSDNHYTTAYDIALMSRELITRFPQVYDYTTIWMDTITHVTRRGSSEFG 292 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 NTN + ++ G G+KTG T + F + A+A++ D LI+V++ D TR +A Sbjct: 293 --LANTNKLLRSYDGCMGLKTGSTSKALFCVSATAVRNDIELISVVMAGPDSKTRFADAA 350 Query: 258 SLLSMGF 264 ++L+ GF Sbjct: 351 AMLNYGF 357 >gi|167579652|ref|ZP_02372526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis TXDOH] Length = 375 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 21 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDSKKITMEQIVTPSEAVRRVG 80 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 81 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAQAQRLGMT 140 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 141 HTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 200 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 201 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKMLN 260 Query: 262 MGF 264 G+ Sbjct: 261 YGY 263 >gi|281500691|pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From Haemophilus Influenzae Length = 344 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 12 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 71 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 72 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 131 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N + Sbjct: 132 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 191 Query: 208 -GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 192 WDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFA 251 Query: 266 N 266 N Sbjct: 252 N 252 >gi|172061846|ref|YP_001809498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MC40-6] gi|171994363|gb|ACB65282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MC40-6] Length = 437 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + IT S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 144 LDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKMLNY 323 Query: 263 GF 264 G+ Sbjct: 324 GY 325 >gi|300705317|ref|YP_003746920.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum CFBP2957] gi|299072981|emb|CBJ44338.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum CFBP2957] Length = 398 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +G V+ D PASLTKLMTAY+ F +++ K IT ++ Sbjct: 45 WMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITPTETVRTVK 104 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN ++ LG+ Sbjct: 105 TDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGMK 164 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K PN N + Sbjct: 165 NTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLLW 224 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQG-DQSLIAVILGALDRNTRNKVSASLLS 261 DG KTG T ++G+ +V SA + G + L++VI+G R + S +L+ Sbjct: 225 LDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVLN 284 Query: 262 MGF 264 G+ Sbjct: 285 YGY 287 >gi|167917341|ref|ZP_02504432.1| penicillin-binding protein 6 [Burkholderia pseudomallei BCC215] Length = 377 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 23 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 82 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 83 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 142 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 143 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 202 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 203 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 262 Query: 262 MGF 264 G+ Sbjct: 263 YGY 265 >gi|134297080|ref|YP_001120815.1| penicillin-binding protein 6 [Burkholderia vietnamiensis G4] gi|134140237|gb|ABO55980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia vietnamiensis G4] Length = 437 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 144 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAQRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGDRTADSMKMLNY 323 Query: 263 GF 264 G+ Sbjct: 324 GY 325 >gi|182416858|ref|ZP_02948244.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237669065|ref|ZP_04529049.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379320|gb|EDT76819.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237657413|gb|EEP54969.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 461 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 139/260 (53%), Gaps = 9/260 (3%) Query: 21 SIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 S AE+N++ + L++ TG +I E D + PAS+TK+MT + + K L Sbjct: 94 SNAESNEIEARSALLMEPCTGKIIYEKNADEKFAPASVTKIMTMLLTIEAVDSGKIALDD 153 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T S+NA + S G T++ LK + + S ND AVA+AE L TE FV M Sbjct: 154 KVTCSENAKKMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTENDFVGMM 213 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KG 197 N ++ LG++ T F N +G+ GH +TA D+A +S + P + Y I +G Sbjct: 214 NKRAEELGMTNTTFKNCNGLPADGHLSTANDIAKMSKEL-LKHPTILKYTGTYMDTITEG 272 Query: 198 KKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +K P N N V F G DG+KTGFT + + I A+A + +++VI+GA RN Sbjct: 273 RKSPIELVNHNKLVRFFDGCDGLKTGFTNEAKYCISATATRNGVRMLSVIMGAPTYKIRN 332 Query: 254 KVSASLLSMGFYNKTDRKKI 273 + ++ LL+ GF +K + KKI Sbjct: 333 RDASILLNYGF-SKYEGKKI 351 >gi|115352994|ref|YP_774833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria AMMD] gi|115282982|gb|ABI88499.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia ambifaria AMMD] Length = 436 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + IT S+ Sbjct: 83 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 LDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 203 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKMLNY 322 Query: 263 GF 264 G+ Sbjct: 323 GY 324 >gi|308069568|ref|YP_003871173.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] gi|305858847|gb|ADM70635.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] Length = 404 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 6/241 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG VI E PAS+TK+MT + +++ K LT + S+ AS S Sbjct: 58 LMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIQDGKLKLTDKVRASEYASSMGGS 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE + +E+ FV MN + LGL THF Sbjct: 118 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVGMMNAKVQQLGLKDTHF 177 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY---FQ--IKGLEIKGKKYPNTNWAV 207 N +G+ HY++A D+A++S R +PQ Y +Q ++ +K NTN V Sbjct: 178 ANCNGLPVENHYSSAHDIAVMS-RELLKYPQITKYTGAYQDYLRKSSVKPFWLVNTNKLV 236 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + GADG+KTG+T + F + A+A + ++AV+LG + RN +S+ F Sbjct: 237 RFYTGADGLKTGYTAEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQY 296 Query: 268 T 268 T Sbjct: 297 T 297 >gi|171320084|ref|ZP_02909152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MEX-5] gi|171094681|gb|EDT39727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MEX-5] Length = 437 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 144 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKMLNY 323 Query: 263 GF 264 G+ Sbjct: 324 GY 325 >gi|119713334|gb|ABL97398.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium EB80_02D08] Length = 385 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 143/272 (52%), Gaps = 1/272 (0%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ L ++++++ + F+ A + Y L++ NT +IAE + PAS+TK+ Sbjct: 1 MKKILFILLSISTIGESQSFVPDAPELDVKSYILIEPNTNTIIAEYNSESEIEPASMTKI 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT+YVV + L + IS+ A S + + G +T+ + LK ++++S ND Sbjct: 61 MTSYVVADQISNGLISLDDEVLISEKAWRMKGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE TE+ FV MN+ + +LG++ T F NA G+ H+++A+D+A L+ Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYASSLGMNNTIFQNATGLPDENHFSSAKDLANLTSNYIN 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FP+ ++ K K N N + DG+KTG T A+G+ +V SA +G L Sbjct: 181 KFPEEYALYKQKEFTFNNIKQLNRNKLLWRDDSTDGVKTGHTEAAGYCLVGSAKRGGMRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 I V+ G+ N R S LL GF T +K Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFYTTQK 272 >gi|148255490|ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146407663|gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] Length = 384 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ N+G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA Sbjct: 24 PTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTIKLNDEYRISENAWR 83 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNNTS 142 P ST S +++ + L I++S ND +A+AE + EK F +M + Sbjct: 84 RGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKRA 143 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL+ + F N++G+ G+ T R++A+L+ I DFP++ F K + N Sbjct: 144 RELGLTKSTFANSNGLPDPGNKMTVRELAMLARHIILDFPEFYKIFGEKEFTWNKIRQQN 203 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + GADG+KTGFT G+ +V SA+Q LI V+ G D R + +L Sbjct: 204 RNPLLNAMEGADGLKTGFTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEW 263 Query: 263 GFYN 266 GF N Sbjct: 264 GFRN 267 >gi|302386799|ref|YP_003822621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium saccharolyticum WM1] gi|302197427|gb|ADL04998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium saccharolyticum WM1] Length = 411 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG +I E D +PAS+TK+MT ++F L K LT + S +A Sbjct: 56 PSAVLMEASTGQIIYEKNADEKRSPASITKIMTLILIFDALDSGKIKLTDEVVTSAHAKS 115 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T+D +K +++ S ND +VA+AE + TE +FV+ MN + LG++ Sbjct: 116 MGGSQVFLEEGEVQTVDTLIKCIVIASGNDASVAMAEYIAGTEDEFVKMMNERAAGLGMT 175 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF + G+ + G H TTARD+A++S + +PQ +Y I +G + G Sbjct: 176 NTHFEDCCGLTESGTHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFG 235 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIA I+ A D R + Sbjct: 236 LSNTNKLLKMATNFNVTGLKTGSTSVAKYCLSATAEKDGVRLIASIMAAPDYKIRFADAQ 295 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 296 TLLNFGYAN 304 >gi|254293994|ref|YP_003060017.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] gi|254042525|gb|ACT59320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] Length = 380 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+V ++ + S P + A Y ++D +TG + D P+ PAS+TK+MTAY Sbjct: 7 FIVSTSLLLGSVYTPAYADALNTSADYAYIMDADTGMALYSKDGDTPFIPASMTKIMTAY 66 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNST-----FKKGSTMTLDNALKLLIVKSAND 118 +VF +++ + L +S+ A + S + GS +++ + L+ +I++S ND Sbjct: 67 IVFERIRDGRLTLEDEFVVSETAWREGGAASGGSTMFLELGSKVSVRDLLRGVIIQSGND 126 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 + IAE++ +++ F + M ++ LGL + F N G+ H +A D+A L++ Sbjct: 127 ACIVIAEAISGSQEAFAEEMTRRARELGLDSATFENPTGLYSDNHRISAADLAQLAYLTI 186 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP++ + K G + PN N +G GADG+KTG SG+ +V SA++ + Sbjct: 187 KDFPEFYALYSEKEFTWNGIRQPNRNPLLGEVQGADGLKTGHLEISGYGLVGSAVRDGKR 246 Query: 239 LIAVILGALD 248 I ++L LD Sbjct: 247 RI-IVLNGLD 255 >gi|167561357|ref|ZP_02354273.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis EO147] Length = 381 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 27 WVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 86 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 87 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMT 146 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y F +K K PN N + Sbjct: 147 GTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFTYNNIKQPNRNRLLW 206 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 207 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGETKESDRVQDSMKMLN 266 Query: 262 MGF 264 G+ Sbjct: 267 YGY 269 >gi|107023825|ref|YP_622152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia AU 1054] gi|105894014|gb|ABF77179.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia AU 1054] Length = 529 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 8/242 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S Sbjct: 176 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRVG 235 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ + LG+ Sbjct: 236 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGMK 295 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 296 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLLW 355 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++ASA + G + L++V++G + R + S +L+ Sbjct: 356 LDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKMLNY 415 Query: 263 GF 264 G+ Sbjct: 416 GY 417 >gi|167717860|ref|ZP_02401096.1| penicillin-binding protein 6 [Burkholderia pseudomallei DM98] gi|167892592|ref|ZP_02479994.1| penicillin-binding protein 6 [Burkholderia pseudomallei 7894] Length = 378 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 24 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 83 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 84 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 143 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 144 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 203 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 204 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 263 Query: 262 MGF 264 G+ Sbjct: 264 YGY 266 >gi|254295961|ref|ZP_04963418.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 406e] gi|157805850|gb|EDO83020.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 406e] Length = 437 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|260549716|ref|ZP_05823933.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624] gi|260407233|gb|EEX00709.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624] Length = 382 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEKVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSAESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHLMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T FMN+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMTNTQFMNSTGLPAEGHYSTAKDMAVLAQHIIKDSSRYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G N R + +LLS GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTDSVNERANQTRALLSWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|167617731|ref|ZP_02386362.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis Bt4] Length = 381 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 27 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 86 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 87 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 146 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 147 NTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 206 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 207 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKMLN 266 Query: 262 MGF 264 G+ Sbjct: 267 YGY 269 >gi|126441761|ref|YP_001057491.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 668] gi|237810642|ref|YP_002895093.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei MSHR346] gi|254187919|ref|ZP_04894431.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei Pasteur 52237] gi|126221254|gb|ABN84760.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] gi|157935599|gb|EDO91269.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei Pasteur 52237] gi|237504177|gb|ACQ96495.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei MSHR346] Length = 437 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|167462561|ref|ZP_02327650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381758|ref|ZP_08055712.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154146|gb|EFX46468.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 392 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 16/247 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG +I+E D PAS+TK+MT ++ + + + + S+ A+ S Sbjct: 45 LLDADTGTIISEKDKDAKLPPASITKIMTMLLIMEAVDKGTLKMDEKVRTSEYAASMGGS 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + TE+ FV+ MN +K LG+ THF Sbjct: 105 QIFLEPGEEMTVEEMLKGIAMASGNDASVAMAEKIAGTEEDFVRMMNERAKQLGMKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKYP----N 202 N +G+ HY+TA D+A++S +I Y Y + K + P N Sbjct: 165 ANCNGLPAENHYSTAYDIALMSRELLKHEKITAFTGAYQDYLR------KDSEKPFWLVN 218 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + GADG+KTGFT F + A+A + + +IAV++G D TRN L Sbjct: 219 TNKLVRFYNGADGLKTGFTSEEKFCLAATAKRDNLRMIAVVMGEPDTKTRNAEVTKLFDY 278 Query: 263 GFYNKTD 269 F T+ Sbjct: 279 SFSQYTN 285 >gi|254181990|ref|ZP_04888587.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1655] gi|184212528|gb|EDU09571.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1655] Length = 437 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|167844088|ref|ZP_02469596.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] Length = 376 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 22 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 81 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 82 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 141 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 142 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 201 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 202 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 261 Query: 262 MGF 264 G+ Sbjct: 262 YGY 264 >gi|315633663|ref|ZP_07888953.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis ATCC 33393] gi|315477705|gb|EFU68447.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis ATCC 33393] Length = 399 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 123/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+ PD PASLTK+MT+YV LK+ K T +TI ++A Sbjct: 47 YILMDYNSGTVLVALNPDQRQYPASLTKMMTSYVTGQALKQGKIHDTDVVTIGESAWGQN 106 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +++ S ND VA+AE + T FV MN + GL Sbjct: 107 FPGSSKMFLNLNQQVSVADLNRGIVIVSGNDACVAMAEHVSGTVTNFVATMNKYVEQFGL 166 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF HG+ Y++ARDMAI+ I D P+ + K K PN N Sbjct: 167 KNTHFTTVHGLDDENQYSSARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLL 226 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 227 W--DKTIHVDGMKTGHTDKAGYNLVASATNPNNMRLISVVMGVPTYKGREVESKKLLQWG 284 Query: 264 FYN 266 F N Sbjct: 285 FAN 287 >gi|326794762|ref|YP_004312582.1| beta-lactamase [Marinomonas mediterranea MMB-1] gi|326545526|gb|ADZ90746.1| Beta-lactamase [Marinomonas mediterranea MMB-1] Length = 382 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 122/241 (50%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG V+ E PASLTKLMTAY+ + + +S+ A Sbjct: 37 YILMDAYTGEVLVEQNSHKELPPASLTKLMTAYIADYEIARGNISYDDQVRVSEAAWRMK 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + L++ ++ +I++S ND +VA+AE + E FV MN ++ LG+ T Sbjct: 97 GSRMFIREGTRVKLEDLMRGIIIQSGNDASVAVAEHIAGAEGAFVDLMNQHAQLLGMKNT 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N+ G HY++A D+A+LS FP+ + K + PN N + Sbjct: 157 HFQNSTGFPAENHYSSAYDIALLSRAKILQFPESYKMYAEKYFTYNDIRQPNRNKLLWRD 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 DG+KTG T A+G+ + ASA++ LI+V++G R S L++ GF R Sbjct: 217 KTVDGLKTGHTQAAGYCLAASAVRNGTRLISVVMGTSSDEARATESQKLMNYGFRYYETR 276 Query: 271 K 271 K Sbjct: 277 K 277 >gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 385 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 385 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAREL-MKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|167568588|ref|ZP_02361462.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis C6786] Length = 378 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 24 WVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 83 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 84 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMT 143 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y F +K K PN N + Sbjct: 144 GTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFTYNNIKQPNRNRLLW 203 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 204 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGETKESDRVQDSMKMLN 263 Query: 262 MGF 264 G+ Sbjct: 264 YGY 266 >gi|67642413|ref|ZP_00441170.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|121598771|ref|YP_991575.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124385285|ref|YP_001027352.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10229] gi|126449591|ref|YP_001082709.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10247] gi|126454122|ref|YP_001064741.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1106a] gi|167003222|ref|ZP_02269012.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] gi|242314349|ref|ZP_04813365.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1106b] gi|254176979|ref|ZP_04883636.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|254202020|ref|ZP_04908384.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|254207352|ref|ZP_04913703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|254357610|ref|ZP_04973884.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|121227581|gb|ABM50099.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124293305|gb|ABN02574.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10229] gi|126227764|gb|ABN91304.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1106a] gi|126242461|gb|ABO05554.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10247] gi|147747914|gb|EDK54990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|147752894|gb|EDK59960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|148026674|gb|EDK84759.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|160698020|gb|EDP87990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|238523562|gb|EEP87000.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|242137588|gb|EES23990.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1106b] gi|243061219|gb|EES43405.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] Length = 437 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 STHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|260582057|ref|ZP_05849852.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127] gi|260094947|gb|EEW78840.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127] Length = 393 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|329929847|ref|ZP_08283523.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328935825|gb|EGG32286.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 396 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 128/240 (53%), Gaps = 4/240 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG +I E PAS+TK+MT + + E + LT + S+ A+ S Sbjct: 49 LLDADTGTIIYEKNSHDKLPPASITKVMTMLLTMEAIDEGQLKLTDKVRTSEYAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF Sbjct: 109 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWR-IKTD-FPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 +N +G+ HYT+A D+A++S +K D +Y +Q + K + NTN V Sbjct: 169 VNCNGLPAENHYTSAHDIAVMSRELLKYDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVR 228 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + GADG+KTG+T + F + A+A + +AV++GA D TRN + + F T Sbjct: 229 FYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYT 288 >gi|189351640|ref|YP_001947268.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|189335662|dbj|BAG44732.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] Length = 410 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 56 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 115 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 116 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 175 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 176 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 235 Query: 209 TFLGADGMKTGFTCASGFNIVASA---IQG----DQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+GF +++SA I G + L+AV++G + R + S +L+ Sbjct: 236 LDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGEPKESDRTQDSMKMLN 295 Query: 262 MGF 264 G+ Sbjct: 296 YGY 298 >gi|229086646|ref|ZP_04218815.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] gi|228696728|gb|EEL49544.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] Length = 386 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 6/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 39 VIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 99 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DM+I++ + +P +Y ++ E KK+ NTN V Sbjct: 159 QNPTGLPAKDHYSTAYDMSIMAKEL-MKYPLIRKYTGKYEDYLRENTEKKFWLVNTNKLV 217 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 218 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQY 277 Query: 268 TDRK 271 T +K Sbjct: 278 TTKK 281 >gi|301168630|emb|CBW28220.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae 10810] Length = 393 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N + Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 221 WDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|145630679|ref|ZP_01786458.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae R3021] gi|144983805|gb|EDJ91255.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae R3021] Length = 393 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|319896451|ref|YP_004134644.1| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae F3031] gi|317431953|emb|CBY80301.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae F3031] Length = 393 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N + Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 221 WDKTINVDGMKTGHTSRAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|149201815|ref|ZP_01878789.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035] gi|149144863|gb|EDM32892.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035] Length = 387 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 6/246 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ET+ Y ++D TG V+ + D P PAS++KLMT YV F ++ + L + +S Sbjct: 24 ETSAKAAY-VMDVTTGTVLLDKNADTPMPPASMSKLMTLYVAFEAVRSGRLTLDERLPVS 82 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNT 141 ++A Y S + +++ L+ +IV S ND IAE+L TE F + M Sbjct: 83 QHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARFMTQR 142 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 ++ +G++ + F NA G GH + RD+A+L+ I DFP++ F G+ Sbjct: 143 AQQMGMTNSIFRNASGWPAEGHVMSMRDLALLARHIIEDFPEFYPMFAETEFRFDGRAPS 202 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G +GADG+KTG T +GF + SA QG++ ++ VI G R + S S Sbjct: 203 NISNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAKQGERRVVFVISGLATAQDRARESES 262 Query: 259 LLSMGF 264 +++ F Sbjct: 263 IVNWAF 268 >gi|126736702|ref|ZP_01752441.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2] gi|126713817|gb|EBA10689.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2] Length = 382 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 19/269 (7%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ETN Y + D TG V+ D P PAS++KLMT Y+ F + + + + + +S Sbjct: 15 ETNATAAY-IYDQTTGTVLLSKNADTPLPPASMSKLMTIYMAFEAVADGRLDINEELAVS 73 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNT 141 +A+ + S+ +++++ L+ +IV S ND +V +AE+L TE F + M + Sbjct: 74 SHAASFGGSSMFLDTTDRVSVEDLLRGVIVVSGNDASVVLAEALSPDGTESGFARMMTDR 133 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ + F+N+ G GH + D+ IL+ R+ TDFP + F G+ Sbjct: 134 ARQMGMMNSTFVNSSGWPAAGHRMSMEDLGILANRLITDFPTFYPLFAETEFPFDGRVPS 193 Query: 202 NT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N+ N + +GADG+KTG T +GF +V SA Q D+ +I VI G R R++ SA Sbjct: 194 NSRNRNPVLSMGIGADGLKTGHTEEAGFGLVGSAKQDDRRIIFVITGLDSRQERSEESA- 252 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 K IN+ + F Q+ ++ Sbjct: 253 ------------KIINWAFRQFAQKEVAE 269 >gi|323164088|gb|EFZ49896.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G] gi|332761340|gb|EGJ91626.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2747-71] Length = 284 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 11/225 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI +A + Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + L DG+KTG T +G+N+VASA +G LI+ ++G Sbjct: 227 RNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271 >gi|329123117|ref|ZP_08251687.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius ATCC 11116] gi|327471672|gb|EGF17114.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius ATCC 11116] Length = 393 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|145633414|ref|ZP_01789144.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655] gi|145635213|ref|ZP_01790917.1| penicillin-binding protein 5 precursor [Haemophilus influenzae PittAA] gi|144985977|gb|EDJ92579.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655] gi|145267492|gb|EDK07492.1| penicillin-binding protein 5 precursor [Haemophilus influenzae PittAA] Length = 393 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKIMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|145636767|ref|ZP_01792433.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH] gi|145270065|gb|EDK10002.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH] Length = 393 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 T+F HG+ Y++ARDMAI+ I D P+ + K K PN N + Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG T +G+N+VASA + LI+V++G R S LL GF Sbjct: 221 WDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|306840479|ref|ZP_07473238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] gi|306289494|gb|EFM60712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] Length = 396 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|299769239|ref|YP_003731265.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. DR1] gi|298699327|gb|ADI89892.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. DR1] Length = 382 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMTNTQFINSTGLPAEGHYSTAKDMAVLAQHIIKDSSRYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G N R + +LLS GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTDSVNERANQTRTLLSWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|167835257|ref|ZP_02462140.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis MSMB43] Length = 374 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T + Sbjct: 20 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPGEAVRRVG 79 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG++ Sbjct: 80 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVNMMNAQAQRLGMT 139 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 140 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFAYNNIKQPNRNRLLW 199 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +LS Sbjct: 200 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKMLS 259 Query: 262 MGF 264 G+ Sbjct: 260 YGY 262 >gi|53718048|ref|YP_107034.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243] gi|52208462|emb|CAH34396.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243] Length = 403 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 49 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 108 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 109 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 169 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 228 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 229 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 288 Query: 262 MGF 264 G+ Sbjct: 289 YGY 291 >gi|163941818|ref|YP_001646702.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163864015|gb|ABY45074.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 396 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 49 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 109 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 169 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLRENTDKKFWLVNTNKLV 227 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 228 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 284 >gi|167585315|ref|ZP_02377703.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ubonensis Bu] Length = 438 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSAAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ +K LG+ Sbjct: 144 TDESRMFIEADKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNDEAKRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLATLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+GF +++SA + L++V++G + R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGFCLISSAKRQMPGTADAPRRLVSVMMGETKESDRTQDSMKMLN 323 Query: 262 MGF 264 G+ Sbjct: 324 YGY 326 >gi|302874917|ref|YP_003843550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans 743B] gi|307690464|ref|ZP_07632910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans 743B] gi|302577774|gb|ADL51786.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans 743B] Length = 403 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG V+ E + PAS+TK+MT + + + LT IT+S+NA + S Sbjct: 57 LMEPNTGKVLYEKNIHDKYAPASVTKIMTMLLAMEAIDSGRIKLTDTITVSENAKKMGGS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G T++ +K + + S ND AVA+AE + +E+ FV MN + LG+ T F Sbjct: 117 SMILETGEVRTVEEIIKGIAIASGNDAAVAMAEYIGGSEENFVVMMNKKCEELGMKNTTF 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++++S + P + Y I I +G+K P N N V Sbjct: 177 KNCTGLSADGHLSTAYDISLMSREL-LKHPTILKYSSIYMETISEGRKTPIELVNHNKLV 235 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 236 RFFKGCDGLKTGFTSEAKYCISATATRDGVRMLSVIMGAPTFKVRNRDASMLMNYGF 292 >gi|83718804|ref|YP_440938.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|257140407|ref|ZP_05588669.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|83652629|gb|ABC36692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 436 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 82 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 141 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 142 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 201 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 202 NTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 261 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 262 LDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKMLN 321 Query: 262 MGF 264 G+ Sbjct: 322 YGY 324 >gi|154253549|ref|YP_001414373.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] gi|154157499|gb|ABS64716.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] Length = 384 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 136/265 (51%), Gaps = 10/265 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L + A+A+ F F + AE Y L+D +G ++ D +PAS++KLMT + Sbjct: 14 LALTAVALPRGAFAFETAAE-----YAVLMDYESGSILWGKNADEQMHPASMSKLMTLDM 68 Query: 65 VFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNA-LKLLIVKSANDI 119 +F +++ L +S+NA S++ F +T+ +A L+ +IV+S ND Sbjct: 69 LFGAIRDGSVSLDDEFKVSENAWRKGGAASGSSTMFADLNTVVPVHAILRGIIVQSGNDA 128 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +A AE+L +E F + + K +GL+ ++F N+ G H TA D+A+L+ I Sbjct: 129 CIATAEALSGSESAFAEALTERGKAIGLTNSNFTNSTGWPDEDHLMTAHDLAVLARHIIM 188 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +FP++ F+ G K N N A+ DG+KTG T ASG+ +VASA +GDQ L Sbjct: 189 EFPEFYPIFKETDFTWNGIKQGNRNPALYLDPSVDGLKTGHTEASGYGLVASAKRGDQRL 248 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I V+ G R S LL GF Sbjct: 249 ILVLNGLPSERARADESVRLLDWGF 273 >gi|27379630|ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] gi|27352782|dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] Length = 451 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 6/244 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ ++G V+ E D P+S+ KLMTA VVF+ +++ LT IS+NA Sbjct: 91 PTAILIEASSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENAWR 150 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH-MNNTS 142 P ST S +++D+ L I++S ND +A+AE++ E+ F M + Sbjct: 151 KGGAPSGGSTMFAAINSKVSVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTKRA 210 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ + F N++G+ G+ T R++ IL+ I DFP++ F K + PN Sbjct: 211 RELGMTKSTFGNSNGLPDPGNKMTVRELGILARHIILDFPEFYKLFGEKEYTWNKIRQPN 270 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L Sbjct: 271 RNPLLNSMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEW 330 Query: 263 GFYN 266 GF N Sbjct: 331 GFRN 334 >gi|229013286|ref|ZP_04170427.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|229134885|ref|ZP_04263692.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228648560|gb|EEL04588.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228748053|gb|EEL97917.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 385 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S++A+ S Sbjct: 38 VIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF Sbjct: 98 QIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAV 207 N G+ HY+TA DMAI++ + +P +Y ++ E KK+ NTN V Sbjct: 158 QNPTGLPAKDHYSTANDMAIMAKEL-MKYPLIRKYTGKYEDYLRENTDKKFWLVNTNKLV 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +I+V++GA RN LL F Sbjct: 217 RFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAF 273 >gi|161523591|ref|YP_001578603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|221199887|ref|ZP_03572930.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2M] gi|221207444|ref|ZP_03580453.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2] gi|160341020|gb|ABX14106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|221172647|gb|EEE05085.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2] gi|221180126|gb|EEE12530.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2M] Length = 438 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 144 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA---IQG----DQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+GF +++SA I G + L+AV++G + R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGEPKESDRTQDSMKMLN 323 Query: 262 MGF 264 G+ Sbjct: 324 YGY 326 >gi|221211096|ref|ZP_03584075.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1] gi|221168457|gb|EEE00925.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1] Length = 438 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 84 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 143 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 144 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 203 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 204 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 263 Query: 209 TFLGADGMKTGFTCASGFNIVASA---IQG----DQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+GF +++SA I G + L+AV++G + R + S +L+ Sbjct: 264 LDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGEPKESDRTQDSMKMLN 323 Query: 262 MGF 264 G+ Sbjct: 324 YGY 326 >gi|262370309|ref|ZP_06063635.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046] gi|262314651|gb|EEY95692.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046] Length = 436 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 20/266 (7%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF---- 66 A L NI P ET + +T+ D+ +G VIAE+ PASLTK+M AY+ Sbjct: 21 AALLNIVP-----ETVEAQAWTVFDSQSGQVIAEHNSHVQRAPASLTKMMVAYIALKEIN 75 Query: 67 -SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 L + + + TP+ + E S K+G +++D L L+V SAND AV +AE Sbjct: 76 AGKLNKSEILTATPVVSTVMWDE---SQMYLKQGEQISVDQLLAGLVVMSANDAAVTLAE 132 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + FV MN +K LG++ THF N G+ HY+TA D+A+L + + P Y+ Sbjct: 133 RISGDIPNFVARMNQEAKALGMTETHFQNPAGITMPEHYSTAHDLALLGQALVNETPDYL 192 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQS 238 +Y + + + + TN + DG+KTG+T A+G+N+ +A + ++ Sbjct: 193 YYSKQQSFSYNQRFHRATNVLLKQDPTVDGLKTGYTKAAGYNLALTANRPTMNPDNPNRR 252 Query: 239 LIAVILGALDRNTRNKVSASLLSMGF 264 L+ ++LG R +V+ +L+++ + Sbjct: 253 LVVIVLGTESATKRAEVAHNLMNLSY 278 >gi|187779539|ref|ZP_02996012.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC 15579] gi|187773164|gb|EDU36966.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC 15579] Length = 407 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ + GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSEEGHKTSAYDISIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|325844944|ref|ZP_08168309.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] gi|325488994|gb|EGC91383.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] Length = 389 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E P PAS+TK+M+ Y++ + I +S+NA+ Y S Sbjct: 39 LIEAETGEILYEKNPHEQLAPASMTKMMSMYLILESIHNGALQWDEVIRVSENAASYGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G M + + K + + SAND A+AE + +E+ FV+ MN +K LG++ T F Sbjct: 99 QIYLKPGEKMIVRDLFKSIAIASANDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP----NTNWAV 207 N G+ GH TT DM+I++ + D+P+ + + I+ + P NTN + Sbjct: 159 KNPTGLTAAGHVTTPYDMSIIARHLLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNRLI 218 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGFT +G+ + A+A + +IAV++GA RN+ L+ + Sbjct: 219 KYVDGVDGLKTGFTQEAGYCLTATAQRNGMRVIAVVMGASKSEIRNQEVTRLIEYAY 275 >gi|167901088|ref|ZP_02488293.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] Length = 371 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 17 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 76 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 77 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 136 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 137 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 196 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 197 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 256 Query: 262 MGF 264 G+ Sbjct: 257 YGY 259 >gi|167736880|ref|ZP_02409654.1| penicillin-binding protein 6 [Burkholderia pseudomallei 14] Length = 376 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 22 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 81 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 82 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 141 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 142 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 201 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 202 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 261 Query: 262 MGF 264 G+ Sbjct: 262 YGY 264 >gi|306843866|ref|ZP_07476461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] gi|306275621|gb|EFM57345.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] Length = 396 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAVAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|254719069|ref|ZP_05180880.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|265984060|ref|ZP_06096795.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306838351|ref|ZP_07471196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] gi|264662652|gb|EEZ32913.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306406491|gb|EFM62725.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] Length = 396 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTD 269 G D Sbjct: 278 WGMTGFDD 285 >gi|182678513|ref|YP_001832659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634396|gb|ACB95170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 394 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 123/248 (49%), Gaps = 11/248 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG V+ E PD P PAS K+MTA +VF L+E + L IS+ A Sbjct: 35 PNVILIEAETGGVLFEKNPDAPVIPASTAKIMTAELVFQNLREGRIHLDDTFLISETAWR 94 Query: 89 YPPSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 + S +GS+M +++ ++ L++ S ND A+A+AE L +E F M Sbjct: 95 QGGAPS---RGSSMYAALNSHVRVEDLIRGLVIDSGNDAAIALAEGLAGSEGAFATLMTK 151 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL + F NA G TARDMA L+ + T +P Y YF K + Sbjct: 152 RARELGLDHSVFTNAWGRGDPDQLVTARDMARLAAHVITTYPDYYKYFGEKEFTWNKIRQ 211 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + GADG+KTG ASG+ +V SA+Q + LI + GA + R + L Sbjct: 212 TNRNPLLTMDFGADGLKTGNIDASGYGLVGSAVQNGERLILALYGAKNAKERADEARRLF 271 Query: 261 SMGFYNKT 268 GF + T Sbjct: 272 LWGFRSFT 279 >gi|291562424|emb|CBL41240.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 450 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D P NPAS+TK+MT ++F L+ K LT + S +A Sbjct: 90 PSAILMEASTGTVICEKNADEPRNPASVTKIMTLILIFDALQSGKIRLTDEVVTSAHAKS 149 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + E FV+ MN +K LG+ Sbjct: 150 MGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFIGGDEGTFVKMMNERAKGLGME 209 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 T F++ G+ H TTARD+A++S + T +PQ +Y I +G + G Sbjct: 210 HTKFIDCCGLTDSPEHVTTARDIALMSRELITKYPQITNYTTIWMENITHVTKQGTKEFG 269 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIA I+ A D R K + Sbjct: 270 LSNTNKLLKMATNFEVTGLKTGSTSIAKYCLSATAKKDGVELIAAIMAAPDFKARFKDAV 329 Query: 258 SLLSMGFYN 266 +LL+ GF N Sbjct: 330 TLLNYGFGN 338 >gi|254714078|ref|ZP_05175889.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|254716865|ref|ZP_05178676.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261218667|ref|ZP_05932948.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261321835|ref|ZP_05961032.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|260923756|gb|EEX90324.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294525|gb|EEX98021.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] Length = 396 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KL+TA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLITAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQR 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 218 NRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQ 277 Query: 262 MGFYNKTDRK 271 G D + Sbjct: 278 WGMTGFDDMR 287 >gi|269102681|ref|ZP_06155378.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162579|gb|EEZ41075.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 348 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 4/235 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPP 91 +D +TG V+ E+ + NPASLTKLMT+YV +K+ + IS+NA + Sbjct: 1 MDYHTGRVLVEHNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFHD 60 Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ F + G+ + + + + LI++S ND +VAIAE + ++ FV MN+ +K L ++ + Sbjct: 61 SSKMFIEVGAEVPMMDLFRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKKLNMNNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GT 209 F NAHG+ Y+T D+A+L + D P + K N N + + Sbjct: 121 RFANAHGLDHDDLYSTPYDIALLGQALIRDLPDIYPLYSEKSFTYNNITQRNRNGLLHDS 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DGMKTG+T +G+++ +SA +GD LIAV++G R S LL+ GF Sbjct: 181 SMNVDGMKTGYTGGAGYSLASSATEGDMRLIAVVMGTKSPKIRQAESKQLLNYGF 235 >gi|83858300|ref|ZP_00951822.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853123|gb|EAP90975.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633] Length = 399 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 142/291 (48%), Gaps = 16/291 (5%) Query: 1 MRQFLVIIAMAMLSNIFP--FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+ L ++A+ +S + P A + + +LD +G V+ + P PAS++K Sbjct: 19 MRRLLCLLALITVS-LSPSAMAQSAFDTRASHAVILDYESGDVLFSKNGEEPMPPASMSK 77 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD--------NALKL 110 LMTA +VF L++ + L T + +S+NA + S STM LD + ++ Sbjct: 78 LMTALMVFEALEDGRFTLDTSLPVSENAWRRGGAAS---GSSTMFLDVNSRAEVGDLIRG 134 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +IV+S ND + +AE+L TE+ F Q M + LGL + F NA G H +A D+ Sbjct: 135 IIVQSGNDACIVVAEALGGTEENFAQMMTERAHELGLESASFANATGWPDPDHRISALDL 194 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A L+ I +PQY + G + N N +G F GADG+KTG T SG+ +VA Sbjct: 195 ARLARHIIETYPQYYDIYSETEFTYNGIRQYNRNPLLGVFDGADGLKTGHTEESGYGLVA 254 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKD 279 SA + + I V G R S L+ F ++ D + ++ D Sbjct: 255 SAERDGERRIVVFNGMDSNRARADESERLMRAAFSEFSTVDLVEAGEVLGD 305 >gi|209518827|ref|ZP_03267640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] gi|209500712|gb|EEA00755.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] Length = 273 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPP 91 L+D +G ++ E+ D PASLTKLMTAY+ LK + + + + E Sbjct: 2 LVDGESGQILLEHNADAKRQPASLTKLMTAYIALDALKHGSVRWDEKVAVNTADIGEVGG 61 Query: 92 SNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + G + + + ++ LI SAND A+ +A + T F Q MN+ ++ LG++ Sbjct: 62 DEARMYLVPGQQVPVRDLVQGLIAASANDAALVLARRVGGTPAGFEQLMNDIARKLGMAH 121 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAVG 208 THF G+ G+Y+TARD++ L+ R+ DFPQY + F + + GK + N NW +G Sbjct: 122 THFSTPSGITTPGNYSTARDLSTLAMRLTKDFPQY-YTFSSEQHFVYGKFEKRNKNWLLG 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDRNTRNKVSASLLSM 262 DGMKTG T A+G+ IVA+A + + + AVILGA N R + SLL+ Sbjct: 181 KDPSVDGMKTGHTQAAGYCIVATAKRKQTAPPMMRRVFAVILGAPTANDRITGAGSLLNY 240 Query: 263 GF 264 F Sbjct: 241 AF 242 >gi|159043475|ref|YP_001532269.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae DFL 12] gi|157911235|gb|ABV92668.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae DFL 12] Length = 393 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 20/244 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D TG V+ E D P PAS++KLMT Y++F L++ A+ L T +S A Sbjct: 34 VVDVTTGTVLLEKNADVPLPPASMSKLMTLYMLFEALEKNPAVTLDTTFRVSARA----- 88 Query: 92 SNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 K GSTM T ++ +K +IV+S ND V +AE L TE+ F + M Sbjct: 89 ---MAKGGSTMFLTERDRPTAEDLIKGIIVQSGNDATVVVAEGLAGTEEAFSRLMTEKGA 145 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-- 201 +GL+ + F N+ G H + RD+ IL+ RI D+P+Y YF + G+ Sbjct: 146 AIGLTQSTFTNSSGWPDPQHRMSMRDLGILTQRIIEDYPEYYGYFAMSEWGFDGRAPQNR 205 Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADG+KTG T +G+ +V SA QG + +I VI G R + S ++ Sbjct: 206 FNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAQQGARRIIFVITGLETDRARAEESERIV 265 Query: 261 SMGF 264 S F Sbjct: 266 SWAF 269 >gi|76808683|ref|YP_332034.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b] gi|134279982|ref|ZP_01766694.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305] gi|167822505|ref|ZP_02453976.1| penicillin-binding protein 6 [Burkholderia pseudomallei 9] gi|217420171|ref|ZP_03451677.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226193704|ref|ZP_03789307.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei Pakistan 9] gi|254258059|ref|ZP_04949113.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1710a] gi|76578136|gb|ABA47611.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b] gi|134249182|gb|EBA49264.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305] gi|217397475|gb|EEC37491.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225934282|gb|EEH30266.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei Pakistan 9] gi|254216748|gb|EET06132.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1710a] Length = 437 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|54302470|ref|YP_132463.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46915892|emb|CAG22663.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 394 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 8/240 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+ +G VIA + P PASLTK+MT+YVV + + IS+NA + Sbjct: 41 WLLMSYESGQVIASFNENEPLAPASLTKIMTSYVVGKEINAGHINNDDLVIISENAWGKK 100 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F G +T+D K +I+ S ND VA+AE + + F++ MN ++ +G+ Sbjct: 101 FPGSSKMFLNIGDNVTVDQLNKGVIISSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGM 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F N HG+ +TTA D+AIL+ + D P+ F+ K K N N Sbjct: 161 QNTYFTNPHGLDADEQFTTAYDIAILTRALIKDLPEMYGLFKEKSFTFHDIKQGNRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W T L DG+KTG T +G+++V+SA Q Q IAV++G R S LL+ GF Sbjct: 221 W--DTTLNVDGVKTGHTSKAGYSLVSSAEQSGQRFIAVVMGTKSTGIRRSESKKLLTWGF 278 >gi|300854313|ref|YP_003779297.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434428|gb|ADK14195.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] Length = 435 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 128/242 (52%), Gaps = 16/242 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G VI E PAS+TK+MT + + + L+ +T+S+NA + S Sbjct: 89 LMEPASGKVIFEKSSHEKLEPASVTKIMTMLLTMEAVDSGRISLSDKVTVSENAKKMGGS 148 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++++ +K + + S ND AVA+AE L +E +FVQ MN + LG+ T F Sbjct: 149 SMLLDTGEVRSVEDLIKGIGIASGNDAAVAMAEYLGGSEDQFVQLMNKRAAELGMKDTSF 208 Query: 153 MNAHGVVQHGHYTTARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKYP----N 202 N G+ + GH TTA D+A++S RI YM +G+K P N Sbjct: 209 KNCTGLSEDGHLTTAYDIALMSRELLKHTRILKYTGTYMETIS------EGRKSPIELVN 262 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N V F G DG+KTGFT ++ + I A+A + ++AVI+G+ RNK ++ +++ Sbjct: 263 HNKLVRFFKGCDGLKTGFTSSAKYCISATATRDGARMLAVIMGSPTYKVRNKDASMMMNY 322 Query: 263 GF 264 GF Sbjct: 323 GF 324 >gi|147677558|ref|YP_001211773.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146273655|dbj|BAF59404.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 392 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LL+ TG +I E P AS+TKLMT + + E K LT + S+NA E S Sbjct: 52 LLEPATGKIIYEKEPHKRLPMASVTKLMTLLLAVEAVDEGKFKLTDRVVASENAWEMGGS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M+L + L + ++SAND +VA+AE + +E+ FVQ MN +++LGL+ T+F Sbjct: 112 QIYLEPGEEMSLWDLLLAIGLQSANDASVAVAEHIAGSEEAFVQAMNEKARSLGLNNTNF 171 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGT 209 +N HG+ HYT+A DMA IL +K+ P + +K E++G + NTN + Sbjct: 172 VNCHGLTADNHYTSAHDMAMILKEGLKS--PLFRKISAMKEYELRGGAFKLWNTNKLLWW 229 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GAD KTG+T A+ + + +SA + LI V+LG + + + S L GF Sbjct: 230 YDGADAGKTGWTEAAKYCLASSAERDGLRLICVVLGTPEPQSHFRESTKLFDYGF 284 >gi|295109899|emb|CBL23852.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 394 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 17/275 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L +I +LS IFP AET + L++ TG ++ E + PAS+TK Sbjct: 11 LFLIICMILSTIFPVR--AETESISPEILAASGILMEVETGKILYEKDSNTRRCPASVTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT ++F L K L +T S +A S ++G +++ +K +++ S ND Sbjct: 69 VMTLLLIFEQLDSGKLSLNDTVTTSAHAKSMGGSQVFLEEGEQQSVETMIKCIVIASGND 128 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRI 177 +VA+AE + +E+ FV MN ++ LG+ THF++ G+ HYT+A D+A++S + Sbjct: 129 ASVAMAEHIAGSEQSFVNRMNQRAEELGMKNTHFVDCCGLTDSDEHYTSAYDIALMSREL 188 Query: 178 KTDFPQYMHYFQ-----IKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 PQ Y I + +G K NTN + T+ G G+KTG T + F + Sbjct: 189 IRKHPQIFEYSSIWMENITHVTAQGTKKFGLTNTNRLIRTYPGCKGLKTGSTSKAKFCLS 248 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A A + SL++V++ A D R K +++LL GF Sbjct: 249 AVAERDGLSLLSVVMAAPDYKARLKDASALLDYGF 283 >gi|260587845|ref|ZP_05853758.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|331083847|ref|ZP_08332956.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542110|gb|EEX22679.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|330403272|gb|EGG82832.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium 6_1_63FAA] Length = 393 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 146/273 (53%), Gaps = 14/273 (5%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ + + ++F P AE +L P+ L++ +TG +I E D PAS+TK+M Sbjct: 9 IVVGILLFCSLFLTPLTVKAENEELITAPHGVLMEASTGKIIYEKDMDTRVKPASITKIM 68 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T ++F L++ + + S A S ++G T++ +K +++ S ND + Sbjct: 69 TLILIFDELEKGNLHMEDEVVTSAYAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDAS 128 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKT 179 A+AE + +E +FV+ MN +K LG+ T+F + G+ + HYT+A D+AI+S + T Sbjct: 129 AAMAEHIAGSETEFVKRMNERAKGLGMENTNFEDCCGLTESDNHYTSAHDVAIMSRELIT 188 Query: 180 DFPQYMHYFQ-----IKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +P+ + Y I + KG NTN + ++ G G+KTG T + + + A Sbjct: 189 RYPKILEYSSVWMENITHVTQKGNSEFGLTNTNKLIRSYDGCVGLKTGSTSVAKYCVSAV 248 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A + +LI+V++ A D R K +A++L++GF Sbjct: 249 AQREGITLISVVMTAPDYKVRFKDAAAMLNLGF 281 >gi|163746820|ref|ZP_02154177.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45] gi|161379934|gb|EDQ04346.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45] Length = 396 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 142/280 (50%), Gaps = 25/280 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----LTTPITISKNASE 88 +LD TG V+ D P PAS++KLMT Y+ F ++ K L + +S++A Sbjct: 30 VLDQTTGTVLLAKNADEPLPPASMSKLMTLYMAFEAVERGKQNGGLDLVEELPVSEHAMS 89 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLG 146 Y S +++++ ++ +IV S ND + IAE+L TE F + M ++ +G Sbjct: 90 YGGSTMFLDTTDRVSVEDLIRGVIVLSGNDASAVIAEALSPDGTEYGFARLMTQRAQQMG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN---T 203 ++ + F N++G Q GH + RD+ +L+ RI +D+PQ+ F + G+ N Sbjct: 150 MTNSTFANSNGWPQAGHLMSVRDLGLLANRIISDYPQFYPLFAEREFAFDGRAPQNKLNR 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G +GADG+KTG T +G+ +V SA QGD+ +I V+ G R + + S+ Sbjct: 210 NPLLGLGIGADGLKTGHTNEAGYGLVGSAKQGDRRVIFVLSGLDSAAARAQEAESV---- 265 Query: 264 FYNKTDRKKINYIIKDFYQQNLSN---EVPNISEEVCTTQ 300 +N+ + F Q++L ++ N + TTQ Sbjct: 266 ---------VNWAFRQFTQRDLGQAGKQIANAPVALGTTQ 296 >gi|296133162|ref|YP_003640409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296031740|gb|ADG82508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 389 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 10/262 (3%) Query: 12 MLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 M++ +FP A + P L+D TG V+ E D PAS+TK+MT V Sbjct: 17 MITILFPTQGFAAPEQQPLLETTAESAILIDAVTGKVLFEKAADVERPPASVTKVMTLLV 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 L + K L+ + S+NAS S + +++ L + V SAND VA+A Sbjct: 77 ALEQLAKGKISLSDKVVTSENASGMGGSQVYLEPNEELSMREMLISIAVGSANDACVAVA 136 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + + +V+ MN+ +K LGL THF NA+G+ GHYT+ARD+A++ R +P + Sbjct: 137 EHIAGSHEAYVKMMNDKAKELGLKHTHFANAYGLPAEGHYTSARDLAVMM-REALKYPLF 195 Query: 185 MHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 IK +++G ++ NTN + + G DG KTG+T + + + ++ + LIAV Sbjct: 196 SKLTSIKRYDLRGGEFVLWNTNKLLWWYDGCDGGKTGWTSEAKYCLASTCKRNGLRLIAV 255 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 ++ + + + S L + GF Sbjct: 256 VMATPEPRSHFRESMRLYNYGF 277 >gi|293375491|ref|ZP_06621770.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] gi|292645891|gb|EFF63922.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] Length = 389 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E P PAS+TK+M+ Y++ + I +S+NA+ Y S Sbjct: 39 LIEAETGEILYEKNPHEQLAPASMTKMMSMYLILESIHNGALQWDEVIRVSENAASYGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G M + + K + + SAND A+AE + +E+ FV+ MN +K LG++ T F Sbjct: 99 QIYLKPGEKMIVRDLFKSIAIASANDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP----NTNWAV 207 N G+ GH TT DM+I++ + D+P+ + + I+ + P NTN + Sbjct: 159 KNPTGLTAAGHVTTPYDMSIIARHLLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNKLI 218 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGFT +G+ + A+A + +IAV++GA RN+ L+ + Sbjct: 219 KYVDGVDGLKTGFTQEAGYCLTATAQRNGMRVIAVVMGASKSEIRNQEVTRLIEYAY 275 >gi|225572270|ref|ZP_03781134.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM 10507] gi|225040275|gb|EEG50521.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM 10507] Length = 414 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 9/245 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 PY L++ +TG ++ E D +PAS+TK+MT ++F ++ + +T S A Sbjct: 56 PYGVLMEASTGEILYEKEKDTKRSPASITKIMTLILIFDAIENGSLNMDDMVTTSAYAKS 115 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T ++ +K +++ S ND +VA+AE + +E++FV+ MN+ +++LG+ Sbjct: 116 MGGSQVYLEEGETQDVETMIKCIVIASGNDASVAMAEHIAGSEEEFVKKMNDRAQSLGMK 175 Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--------K 199 THF + G+ HYTTA D+A++S + T +P+ + Y I I K Sbjct: 176 NTHFEDCCGLTDSENHYTTAYDVALMSRELITHYPKILEYSSIWMDTITHKTRQGTSEFG 235 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + ++ G G+KTG T + + + A A + SLI+V++ A D R +A++ Sbjct: 236 LTNTNKLIRSYEGCVGLKTGSTSLAKYCVSAVAQKNGMSLISVVMAAPDYKVRFSDAAAM 295 Query: 260 LSMGF 264 + GF Sbjct: 296 FNYGF 300 >gi|326791361|ref|YP_004309182.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326542125|gb|ADZ83984.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 396 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ ++G ++ E D P PAS+TK+MT ++ + K +TIS++A+ Sbjct: 42 YILMEESSGKILLERNADEPLPPASITKVMTLLLINEAVDTGKINWEDKVTISEHAAHMG 101 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T+ + +K + + SAND AVA++E + +E++FV+ MN + LG++ T Sbjct: 102 GSQVFMEPGEEQTVRDLVKCICIASANDAAVAMSEYIAGSEEQFVELMNKRAAELGMTHT 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKK---YPN 202 F NA G+ GH +TARD+A++S + P+ I +G+ N Sbjct: 162 VFKNACGLHTEGHVSTARDIALMSRALVNGHPEITKTLTTWMDTITHRTRRGESEFGLSN 221 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + G G+KTG+T + + A+A + + LIAVI+GA D TR + + LL Sbjct: 222 TNKMLKWYKGITGLKTGYTPEAKHCVSATATRDNMGLIAVIMGAADGKTRFQEAGQLLDY 281 Query: 263 GFYN 266 GF N Sbjct: 282 GFAN 285 >gi|254196217|ref|ZP_04902641.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13] gi|169652960|gb|EDS85653.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13] Length = 437 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ V+A D PASLTKLMTAY+VF L KK + +T S+ Sbjct: 83 WVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRVG 142 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ Sbjct: 143 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + D+P Y + F +K K PN N + Sbjct: 203 NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 262 Query: 209 TFLGADGMKTGFTCASGFNIVAS-------AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++AS A + L+ V++G + R + S +L+ Sbjct: 263 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLN 322 Query: 262 MGF 264 G+ Sbjct: 323 YGY 325 >gi|254486408|ref|ZP_05099613.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101] gi|214043277|gb|EEB83915.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101] Length = 389 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 9/248 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----LTTPITISKNASE 88 ++D TG V+ D P PAS++KLMT Y+ F ++ K+ LT + +S++A Sbjct: 30 VIDQTTGTVLLAKNADDPLPPASMSKLMTLYMAFEAVERGKSNGGLDLTEELPVSQHAMS 89 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLG 146 Y S + +++ L+ +IV S ND IAE+L TE F + M ++ +G Sbjct: 90 YGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARLMTRRAQQIG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNT 203 ++ + F N++G GH + RD+ +++ R+ TDFPQY F + G+ N Sbjct: 150 MTNSTFANSNGWPAAGHRMSMRDLGLVAMRLITDFPQYYPLFSQREFLFDGRAPQNKANR 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G +GADG+KTG T +G+ +V SA QGD+ +I VI G R + S ++++ Sbjct: 210 NPLLGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLETAAERAQESEAIVNWA 269 Query: 264 FYNKTDRK 271 F R+ Sbjct: 270 FRQFAQRE 277 >gi|56697577|ref|YP_167946.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3] gi|56679314|gb|AAV95980.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3] Length = 388 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 7/244 (2%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++A+ M P + + + Y +LD +TG V+ D PAS++KLMT YV F Sbjct: 9 LLALGMALTALPGFAYDTSARAAY--VLDQSTGTVLLTKNADEALPPASMSKLMTLYVTF 66 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L++ + L + +S++A Y S + +++ L+ +IV S ND IAE+ Sbjct: 67 EALRDGRLTLDERLPVSQHAMSYGGSTMFLNTTDRVRVEDLLRGIIVLSGNDACAVIAEA 126 Query: 127 LCK--TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 L TE F + M ++ +G++ + F N++G GH + D+A+L+ R+ TDFP+Y Sbjct: 127 LSPDGTEAGFARFMTKRAQQMGMTRSTFANSNGWPAAGHLMSVHDLAVLANRLITDFPEY 186 Query: 185 MHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 F G+ N N + +GADG+KTG T +G+ +V SA QGD+ +I Sbjct: 187 YPLFAETEFAFDGRAPSNVRNRNPLLKLDIGADGLKTGHTAEAGYGLVGSARQGDRRVIF 246 Query: 242 VILG 245 V+ G Sbjct: 247 VLTG 250 >gi|160942230|ref|ZP_02089539.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC BAA-613] gi|158434787|gb|EDP12554.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC BAA-613] Length = 453 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D +PAS+TK+MT ++F L+ K LT + S +A Sbjct: 95 PSAILMEASTGQVIYEKDADEKRSPASVTKVMTLILIFDALQSGKIQLTDEVVTSAHAKS 154 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + +E +FV+ MN + +LG+S Sbjct: 155 MGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIAGSEDEFVRMMNERAASLGMS 214 Query: 149 ATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF++ G+ + HYTTARD+AI+S + +PQ +Y I +G + G Sbjct: 215 NTHFVDCCGLTESPDHYTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFG 274 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIA I+ A D R + Sbjct: 275 LSNTNKLLKMATNFTVTGLKTGSTSIAKYCLSATAEKDGVRLIAAIMAAPDFKARFADAQ 334 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 335 TLLNYGYAN 343 >gi|116748745|ref|YP_845432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobacter fumaroxidans MPOB] gi|116697809|gb|ABK16997.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Syntrophobacter fumaroxidans MPOB] Length = 422 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 122/232 (52%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E D PAS TK+ + Y+VF L++ + L I IS+ A S Sbjct: 42 LMEVSTGAILFEQNADEVIEPASFTKIASLYLVFEALRQGRIHLNDEIWISEAAWRTGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G+ + L+ LK + V S ND VA AE + + + FV+ MN ++ LG++ + F Sbjct: 102 KMFVGVGTKVPLEELLKGIAVVSGNDACVAAAEHVSGSAETFVEAMNRKTRELGMTHSRF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N HG+ G TTARDMAIL FP+ + Y ++ N N + Sbjct: 162 LNPHGLPVEGQTTTARDMAILDSAYLRQFPESLQYHSMREYTYNNIVQYNRNHLLLKDPS 221 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG+ A+G+++ A+A + L+AV++GA R + + LL+ GF Sbjct: 222 VDGLKTGYVAAAGYHLAATAKRDGMRLLAVVMGAGTPAVREREALKLLNYGF 273 >gi|304407014|ref|ZP_07388668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus curdlanolyticus YK9] gi|304344001|gb|EFM09841.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus curdlanolyticus YK9] Length = 398 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 130/236 (55%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G VI + PAS+TK+MT ++ L + + LT ++ S+ AS S Sbjct: 53 LMDADSGTVIFDKNSHDRLPPASITKIMTMLLIMEALDDGRLKLTDKVSASEYASSMGGS 112 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M++D +K + + S ND +VA+AE + +E +FV+ MN ++ LG+ THF Sbjct: 113 QIFLEPGEEMSVDEMIKGIALASGNDASVAMAEKIGGSEAEFVKMMNEKAQQLGMKDTHF 172 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N +G+ HY++A D+AI+S + T +Y +Q + K + NTN V Sbjct: 173 ANCNGLPVADHYSSAHDIAIMSRELLKHTQITKYTGMYQDYLRKTSEKPFWLVNTNKLVW 232 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GADG+KTGFT + F + A+A + +IAV++G + TRN +S+L F Sbjct: 233 FYTGADGLKTGFTNEAKFCLSATARRDGLRVIAVVMGEPNTKTRNAEVSSMLDYSF 288 >gi|312877868|ref|ZP_07737815.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] gi|311795372|gb|EFR11754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] Length = 386 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E +PAS+TK+MT ++ +++ + L+ + S+NAS S Sbjct: 46 LVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 106 QVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + LL GF N Sbjct: 225 RGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280 >gi|188586281|ref|YP_001917826.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350968|gb|ACB85238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 395 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 130/250 (52%), Gaps = 13/250 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P Y L + +G ++ E PAS+TK+MT + L+ ++ L + + + A + Sbjct: 35 PVYLLGEPKSGEILLEQDKQEQVYPASITKIMTLLLTMEALENEQIALEEEVIVPREAED 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P + ++G +T+D+ + + V SAND ++AIA+ + T FV MN+ ++ LG+ Sbjct: 95 IPGTTIFLQQGEKITVDDLITAIAVGSANDASIAIAKHISGTVDNFVDEMNDKARELGMK 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKK------- 199 T+F N HG+ H TTA D+ I++ + + + + +I +E ++GKK Sbjct: 155 NTNFENPHGLHHDEHVTTAEDIFIMASELGK-YEEIHDWLEIWLIEDFLQGKKVVEDDEE 213 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 NTN V + G DG KTGFT S +I A+A Q + IA+I+ D + R + + Sbjct: 214 GIFLSNTNRLVNQYPGCDGFKTGFTEESKHSITATAKQNGERYIAIIMSHEDSDGRFEEA 273 Query: 257 ASLLSMGFYN 266 +LL GF N Sbjct: 274 MNLLDYGFAN 283 >gi|167745582|ref|ZP_02417709.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662] gi|317472823|ref|ZP_07932134.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|167654894|gb|EDR99023.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662] gi|316899742|gb|EFV21745.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 394 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 12/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +G ++ + D PAS+TK+M+ ++F L + + +T+S++A+ S Sbjct: 48 VMEAGSGTILYQKDKDMKLPPASVTKVMSLLLIFEELDKGNLKYSDKVTVSEHAASMGGS 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + T+D LK +++ SAND V++AE + +E FV+ MN +K LG+ T F Sbjct: 108 QVFLEPGESQTVDTMLKCIVISSANDAVVSMAEHIAGSEGAFVKRMNEKAKQLGMKNTTF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYPN 202 N+ G+ GH T+A D+A++S + T P Y +I KG + G N Sbjct: 168 KNSCGLDIKGHETSAYDIALMSRELTTKHPDIFKYTKIWMDKFTHETKKGTKEFG--LSN 225 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + G G+KTG T + F + A+A + SLIAV++ + D TR K +++LL Sbjct: 226 TNKLLKQYNGCTGLKTGSTSTAKFCLSATATRNGVSLIAVVMASDDSKTRVKDASALLDY 285 Query: 263 GF 264 GF Sbjct: 286 GF 287 >gi|254251303|ref|ZP_04944621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa AUO158] gi|124893912|gb|EAY67792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa AUO158] Length = 460 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 132/243 (54%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 106 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 165 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 166 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 225 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 226 STHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 285 Query: 209 TFLGADGMKTGFTCASGFNIVAS---AIQG----DQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ +++S AI G + L+AV++G + R + S +L+ Sbjct: 286 LDPTVDGLKTGHTQAAGYCLISSAKRAIPGTADAQRRLVAVMMGEPKESDRTQDSMKMLN 345 Query: 262 MGF 264 G+ Sbjct: 346 YGY 348 >gi|9971925|gb|AAG10487.1|AF279106_49 predicted penicillin-binding protein 6 precursor [uncultured marine gamma proteobacterium EBAC31A08] Length = 385 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 131/247 (53%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L Y L++ NT VIAE D PAS+TK+MT+YVV + L + IS+ A Sbjct: 29 LKSYILIEPNTNTVIAEFNSDLEIEPASMTKIMTSYVVADQIANGLISLDDEVLISEKAW 88 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + + G +T+ + LK ++++S ND +VAIAE TE+ FV MN+ + +L + Sbjct: 89 RMQGSKTFIEAGKKVTVSDLLKGIMIQSGNDASVAIAEYAGGTERGFVDLMNSYAASLEM 148 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N+ G+ H+++A+D+A L+ FP+ ++ K K N N + Sbjct: 149 NNTIFQNSTGLPDENHFSSAKDLANLTANYINKFPEEYALYKQKQFTFNNIKQLNRNKLL 208 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ADG+KTG T A+G+ +V SA +G LI V+ G+ N R S LL GF Sbjct: 209 WRDDSADGVKTGHTEAAGYCLVGSAKRGGMRLITVVAGSKSDNDRFLSSQRLLEYGFRFF 268 Query: 268 TDRKKIN 274 T +K ++ Sbjct: 269 TTQKMLS 275 >gi|312793772|ref|YP_004026695.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180912|gb|ADQ41082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 386 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E +PAS+TK+MT ++ +++ + L+ + S+NAS S Sbjct: 46 LVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 106 QVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + LL GF N Sbjct: 225 RGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280 >gi|170760218|ref|YP_001787185.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] gi|169407207|gb|ACA55618.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] Length = 407 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSREL-LKHKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGF 296 >gi|144899826|emb|CAM76690.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D TG ++ E D P+S++KLMTAY+VF LKE + + +S+ A + Sbjct: 39 LIDYKTGTILLEKNSDELMVPSSMSKLMTAYLVFEKLKEGSWKMDDQLPVSETAWKRHFK 98 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S GS+ + + ++ +I++S ND +AE+ TE+ F + +++LG+ Sbjct: 99 SGGSLMFLPVGSSAKVGDLIRGVIIQSGNDACSVLAEAHSGTEEAFAEEATRKARDLGML 158 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 T NA G H TTARD++IL+ R+ +DFP+Y + + G + N N + Sbjct: 159 HTTLRNASGWPDPEHLTTARDLSILARRLISDFPEYFPIYSEREFVFNGIRQGNRNPLLY 218 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG T A+G+ +V + +G++ +I VI G R++ SA L+ F Sbjct: 219 GVSGADGLKTGHTEAAGYGLVGTVKRGERRIIMVINGLKSMKERSEESARLMEWAF 274 >gi|84499966|ref|ZP_00998232.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597] gi|84391900|gb|EAQ04168.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597] Length = 406 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 134/266 (50%), Gaps = 34/266 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + D P PAS++KLMT Y+ F L++ + L + +S +A Y Sbjct: 39 VMDLTTRTVLLDKNADMPLPPASMSKLMTLYIAFEALRDGRLRLDEELPVSSHAMSY--- 95 Query: 93 NSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTS 142 GSTM LD + L+ +IV S ND V +AE+L TE F ++M + Sbjct: 96 -----GGSTMFLDTTDRVKVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTQRA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +G++ + F N++G GH + RD+A+L+ R+ DFP + F + G+ N Sbjct: 151 QKMGMTNSTFANSNGWPAAGHRMSMRDLALLAARLIEDFPNFYPLFAERTFAFDGRAPQN 210 Query: 203 T---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N +G +GADG+KTG T +G+ +V SA QGD+ +I + G R + S ++ Sbjct: 211 NTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDRRVIFALSGLPTTAARAQESEAI 270 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNL 285 IN+ + F Q++L Sbjct: 271 -------------INWAFRQFTQKSL 283 >gi|15603792|ref|NP_246866.1| DacA [Pasteurella multocida subsp. multocida str. Pm70] gi|12722361|gb|AAK04011.1| DacA [Pasteurella multocida subsp. multocida str. Pm70] Length = 394 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D N+G VIA PD PASLTK+MT+YVV LK+ K +TI ++A Sbjct: 42 FILMDYNSGAVIAALNPDQRQYPASLTKMMTSYVVGDALKQGKINNADRVTIGESAWGKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +I+ S ND +VAIAE + + FV MN ++ GL Sbjct: 102 FPGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVAIAEHVAGSVPAFVDAMNKYAQQFGL 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF HG+ + Y++ARDMAI+ + D P+ + K K N N Sbjct: 162 KNTHFTTVHGLDEDNQYSSARDMAIIGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLL 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263 W + DG+KTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 222 W--DKSIQVDGIKTGHTDKAGYNLVASATNANNMRLISVVMGVPTIKGREVESKKLLQWG 279 Query: 264 FYN 266 F N Sbjct: 280 FAN 282 >gi|315646365|ref|ZP_07899483.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] gi|315278008|gb|EFU41328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] Length = 396 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG +I E PAS+TK+MT + + + T + S+ A+ S Sbjct: 49 LLDADTGTIIYEKNSHDKLPPASITKIMTMLLTMEAIDAGRLQWTDKVRTSEYAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE L +E+ FV+ MN+ + LG+ THF Sbjct: 109 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQGFVKMMNDKAAELGMKDTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKYP----N 202 +N +G+ HYT+A D+A++S +I Y Y + K + P N Sbjct: 169 VNCNGLPAENHYTSAHDIAVMSRELLKYEQITKYTGSYQDYLR------KDSQKPFWLVN 222 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + GADG+KTG+T + F + A+A + +AV++GA D TRN + + Sbjct: 223 TNKLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDY 282 Query: 263 GFYNKT 268 F T Sbjct: 283 AFAQYT 288 >gi|15895333|ref|NP_348682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15025050|gb|AAK80022.1|AE007709_6 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325509478|gb|ADZ21114.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 404 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 134/246 (54%), Gaps = 6/246 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LL+ +TG +I E + PAS+TK+MT + + K LT +T+S+NA + S Sbjct: 56 LLEPSTGAIIYEKNSHEKFAPASVTKIMTMLLTMEAVDSGKIKLTDKVTVSENAKKMGGS 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++ LK + + S ND AVA+AE L +++ FV MN ++ +G+ T F Sbjct: 116 SMLLDTGEVRTVEELLKGIAIASGNDAAVAMAEYLGGSQENFVNMMNKKAQEIGMKDTSF 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH TTA D++++S + P+ + + I +G+K P N N V Sbjct: 176 KNCTGLNADGHMTTAYDISLMSREL-LKHPKILKFTGTYMETISEGRKTPIALVNHNKLV 234 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + + ++A+I+GA RN+ ++ L++ GF Sbjct: 235 RFFKGCDGLKTGFTDEAKYCISATACKDNVRMLAIIMGAPTYKVRNRDASMLMNYGFSKF 294 Query: 268 TDRKKI 273 T +K + Sbjct: 295 TAKKVV 300 >gi|91977185|ref|YP_569844.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91683641|gb|ABE39943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 432 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D +G V+ E D P+S+ KLMT +VF L + + LT IS+NA Sbjct: 73 PTAILIDAESGSVLFEKNADELRPPSSMLKLMTVELVFHLLTKGEIKLTDDYRISENAWR 132 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +ST + S +++D+ L+ I++S ND +A+AE + +E+ F + M ++ Sbjct: 133 RGGAPAGSSTMFAEIHSRVSIDDLLRGAIIQSGNDSCIALAEGIAGSEQAFAERMTKRAR 192 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F N++G+ G+ + R++ L+ + +P Y F K + N Sbjct: 193 EIGLAQSTFANSNGLPDPGNKMSVRELGRLARHLIQTYPDYYKLFGEKEFTWNKIRQTNR 252 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + T GADG+KTG+T G+ +V SA+Q LI V+ G D + R + LL G Sbjct: 253 NPLLNTMPGADGLKTGYTKDGGYGMVGSAVQNGTRLIVVVNGVEDADDRASEAKKLLEWG 312 Query: 264 FYNKTDR 270 F N R Sbjct: 313 FRNFESR 319 >gi|226311980|ref|YP_002771874.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] gi|226094928|dbj|BAH43370.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] Length = 394 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 132/242 (54%), Gaps = 16/242 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E + PAS+TK+MT ++ ++ + LT + S+ A+ S Sbjct: 46 MIEADTGTVLYEKNANEKMPPASITKVMTMLLIMEAVERGELKLTDKVRTSERAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + + S ND +VA+AE L TE+ FV MN ++ LG+ THF Sbjct: 106 QIFLQPGEEMTVEDMLKGIAIASGNDASVAMAEHLAGTEESFVTRMNERAQQLGMKNTHF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIK-----TDFP-QYMHYFQIKGLEIKGKKYP----N 202 +N++G+ HY++A D+AI+S + T F Y Y + K + P N Sbjct: 166 VNSNGLPAANHYSSAGDIAIMSRELLKHEGITKFTGTYQDYLR------KDTESPFWLVN 219 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G DG+KTG+T + + + A+A + + +IAV+LG D TRN +++ + Sbjct: 220 TNKLVRFYEGVDGLKTGYTGEAKYCLTATAKRNNMRVIAVVLGEPDVKTRNNEVSTMFNY 279 Query: 263 GF 264 F Sbjct: 280 AF 281 >gi|288555970|ref|YP_003427905.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288547130|gb|ADC51013.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] Length = 386 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E PAS+TK+MT ++ + E I S+NA+ S Sbjct: 40 VIERDTGEVLFEKNSHDQLPPASMTKIMTMLLIMEAIDEGSLSYDDKIRTSENAASMGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ + LK + V S ND +VA+AE L TE++FV MN+ +K LGL T+F Sbjct: 100 QVFLEPGEEMTVTDMLKAIAVASGNDASVAMAEHLGGTEEEFVSMMNDKAKELGLENTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 MN++G+ HYTTA D+A++S + D ++ ++ + K+ NTN V Sbjct: 160 MNSNGLPAENHYTTAYDLAMISKELLKYEDITKFTGIYEDYLRQDSENKFWLVNTNKLVK 219 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A + D +I+VI+GA RN +L F Sbjct: 220 FYPGVDGLKTGFTREAMYCLTATAQKNDMRVISVIMGAPTPKERNAQITEMLDYSF 275 >gi|254372818|ref|ZP_04988307.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570545|gb|EDN36199.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3549] Length = 444 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 134/284 (47%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------------- 193 THF N G+ YTTA DMA+L+ +FP+ + KGL Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 194 ------------------EIKG----------KKYP---------NTNWAVGTFLGADGM 216 +KG K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|208779297|ref|ZP_03246643.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG] gi|254374319|ref|ZP_04989801.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3548] gi|151572039|gb|EDN37693.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3548] gi|208745097|gb|EDZ91395.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG] gi|332678194|gb|AEE87323.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida Fx1] Length = 444 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 134/284 (47%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------------- 193 THF N G+ YTTA DMA+L+ +FP+ + KGL Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 194 ------------------EIKG----------KKYP---------NTNWAVGTFLGADGM 216 +KG K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|294083925|ref|YP_003550682.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663497|gb|ADE38598.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] Length = 394 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 13/273 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T + + D +TG V+ + D PAS+ K+MT ++ F ++E L +S+ Sbjct: 32 TTPAEFAYITDFDTGKVLFQKNADMQMKPASMAKIMTIFIAFERIREGGLSLNDKFQVSE 91 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S S + GS +T+ + L +IV+S ND A+ IAE + TE+ F + MN ++ Sbjct: 92 KAWRKGGSRSFLEVGSFVTVSDLLNGVIVQSGNDAAIVIAEGISGTEESFAEEMNFWAQK 151 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKK 199 LG+ T F N+ G TTA+D+ ILS + + F P F+ K E G Sbjct: 152 LGMENTVFRNSTGWPDPELTTTAKDLNILSSALISRFPIDEYPDLYPMFKKKRFEYNGID 211 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N V +GADG+KTG T SG+ +V SAI+ Q ++ V+ G R+ S L Sbjct: 212 QPNRNPLVYGTVGADGLKTGHTKESGYGVVGSAIREGQRVVMVLNGMTSMKQRSAESRRL 271 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + + F R+ Y F++ N + +V N+ Sbjct: 272 MDLAF-----REFKQY---RFFEANETVDVANV 296 >gi|255524154|ref|ZP_05391114.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296186612|ref|ZP_06855014.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium carboxidivorans P7] gi|255512139|gb|EET88419.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296048649|gb|EFG88081.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium carboxidivorans P7] Length = 398 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 139/259 (53%), Gaps = 7/259 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ + G +I E PAS+TK+MT + + K L+ +TIS+NA + S Sbjct: 52 LMEPSNGKIIYEKNCHEKLAPASVTKVMTMLLTMENVDSGKIKLSDKVTISENAKKMGGS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++ +K + + S ND AVA+AE L +E+ FV+ MN + LG+ T+F Sbjct: 112 SMLLDTGEVRTVEELIKGIGIASGNDAAVAMAEYLGGSEEGFVKLMNERAHKLGMKDTNF 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH TTA D+AI+S + P + Y I +G+K P N N V Sbjct: 172 NNCTGLSSPGHVTTAYDIAIMSREL-LKHPDILKYTGTYMETISEGRKSPIGLVNHNKLV 230 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+G+ RNK ++ L++ GF +K Sbjct: 231 RFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGSPTYKVRNKDASMLMNYGF-SK 289 Query: 268 TDRKKINYIIKDFYQQNLS 286 + KK+ KD + NL+ Sbjct: 290 YENKKLIEKGKDVEKVNLN 308 >gi|157692847|ref|YP_001487309.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157681605|gb|ABV62749.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 400 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ D PAS+TK+MT ++ + + K +T + S +A+ S Sbjct: 53 LIERDTGKVLYNKNSDEKLAPASMTKIMTMLLIMEAIDQGKLKMTDKVRTSDHAASMGGS 112 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FV+ MN +K LGL++T F Sbjct: 113 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEHIAGSEEQFVEQMNKKAKELGLTSTVF 172 Query: 153 MNAHGVVQHGHYTTARDMA-----ILSWRIKTDFPQ-YMHYFQIKGLEIKGKKY--PNTN 204 N G+ + HY+TA DMA +L + T F Y Y + + KK+ NTN Sbjct: 173 QNPTGLPEKDHYSTAHDMAKMAKELLKYEQITKFTGVYEDYLR----QNTDKKFWLVNTN 228 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTGFT + + + ASA +G+ +IAV+ GA RN +L F Sbjct: 229 RLIKFYPGVDGLKTGFTGEAKYCLTASAKKGNMRVIAVVFGASTPKDRNAQVVKMLDYAF 288 Query: 265 YNKT 268 T Sbjct: 289 SQYT 292 >gi|119713206|gb|ABL97274.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium EB0_50A10] Length = 384 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 6/267 (2%) Query: 1 MRQFLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ L+ + +L+NI F+ A L Y L++ NT VIAE D PAS+T Sbjct: 1 MKKLLIPL---LLTNILYAQSFVPDAPELDLKSYILIEPNTNTVIAEFNSDSEIEPASMT 57 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT+YVV + L + IS+ A S + G +++ + LK +I++S N Sbjct: 58 KIMTSYVVADQIANDLISLDDQVLISEKAWRMEGSKMFIEAGKKVSVSDLLKGIIIQSGN 117 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VAIAE TE+ FV MN + L ++ T F N+ G+ H+++A+D+A L+ Sbjct: 118 DASVAIAEYAGGTERGFVDLMNAYAGALSMNNTIFKNSTGLPDENHFSSAKDLATLTSDF 177 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 FP + K K N N + +DG+KTG T A+G+ +V SA +G+ Sbjct: 178 IKKFPDIYSLYNEKQFTFNNIKQLNRNKLLWRDDSSDGVKTGHTEAAGYCLVGSAKRGNM 237 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGF 264 LI V+ G+ N R S LL GF Sbjct: 238 RLITVVAGSDSDNNRFLASQRLLEYGF 264 >gi|299133891|ref|ZP_07027085.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298591727|gb|EFI51928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 408 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D TG V+ E D P+S+ KLMTA V+F L + + LT IS+NA Sbjct: 49 PTAILIDAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAWR 108 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +ST S +++D+ L L+++S ND +A+AE +E FV M +K Sbjct: 109 KGGAPSGSSTMFAAIHSQVSIDDLLHGLVIQSGNDSCIALAEGYAGSEDAFVNRMQARAK 168 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL+ + F N +G+ + + R++A L+ I +P + F + + N Sbjct: 169 ELGLTRSTFGNTNGLPNPDNKMSVRELAHLTRHIILTYPDFYKLFGEREFTWNKIRQMNR 228 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G+ GADG+KTG+T G+ +V SA+Q LI V+ G D R + LL G Sbjct: 229 NPLLGSLDGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDSGDRAAAAKKLLEWG 288 Query: 264 FYNKTDR 270 F N R Sbjct: 289 FKNFESR 295 >gi|118497499|ref|YP_898549.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida U112] gi|195536192|ref|ZP_03079199.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida FTE] gi|118423405|gb|ABK89795.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida U112] gi|194372669|gb|EDX27380.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida FTE] Length = 444 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 134/284 (47%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T + IS+NA+ Sbjct: 55 PAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMVPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------------- 193 THF N G+ YTTA DMA+L+ +FP+ + KGL Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 194 ------------------EIKG----------KKYP---------NTNWAVGTFLGADGM 216 +KG K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDSERFISVVLGTTSSAKRDSESAKLL 338 >gi|331269461|ref|YP_004395953.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum BKT015925] gi|329126011|gb|AEB75956.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum BKT015925] Length = 379 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 139/252 (55%), Gaps = 16/252 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E + PAS+TK+MT + + K LT + +S+NA + + Sbjct: 30 LMEPSTGKVVFEKNVHEKFAPASVTKIMTMLLTMEAIDSGKIKLTDTVVVSENAKKMGKN 89 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G T+++ LK + + S ND A A+AE + +E FV+ MN ++ LG+ Sbjct: 90 GSSSMLLDTGEVRTVEDLLKGVAIASGNDAATALAEYIGGSESSFVEMMNKRAQQLGMKD 149 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYP---- 201 T F N HG+ + GH T+A D++I+S + ++ + G + +G+K P Sbjct: 150 TTFKNCHGLSKEGHLTSAYDISIMSR----ELLKHKKILKYSGTYMETISEGRKKPIELV 205 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V + G DG+KTGFT + + I A+A++ + ++A+I+GA RN+ ++ L++ Sbjct: 206 NHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRNNIRMLAIIVGAPTYKVRNRDASMLMN 265 Query: 262 MGFYNKTDRKKI 273 GF +K + KKI Sbjct: 266 YGF-SKFESKKI 276 >gi|312797424|ref|YP_004030346.1| D-alanyl-D-alanine serine-type carboxypeptidase [Burkholderia rhizoxinica HKI 454] gi|312169199|emb|CBW76202.1| D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4) [Burkholderia rhizoxinica HKI 454] Length = 403 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 139/272 (51%), Gaps = 12/272 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++ +A D PASLTKLMT+Y+VF LK KK + + + Sbjct: 49 WVLVDASSAQTLASANADERVEPASLTKLMTSYLVFDALKTKKISMDQTVMPGEAVRRVG 108 Query: 91 PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +T+ + + +IV+S ND A+A+AE + +E FVQ MN ++ LG+ Sbjct: 109 TDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAHFVQMMNEAAQKLGMK 168 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 TH+ + +G+ HYT+A D+A+LS + D+P+Y F +K K N N + Sbjct: 169 NTHYADVNGMPNPQHYTSAADLAVLSAHLIRDYPEYYSIFAVKDFTYNKIKQLNRNRLLW 228 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG T A+G+ ++ASA + + L++V++G + R + S +L+ Sbjct: 229 IDPTVDGLKTGHTKAAGYCLIASAKRPLPGVPDASRRLVSVMMGEPKEHDRTQDSLKMLN 288 Query: 262 MGF--YNKTDRKKINYIIKD-FYQQNLSNEVP 290 G+ Y+ K N +I + L N VP Sbjct: 289 YGYTAYDTVRLYKANQVIDSPRVYKGLQNAVP 320 >gi|56963557|ref|YP_175288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56909800|dbj|BAD64327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 388 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 34/309 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E D+ PAS+TK+MT ++ ++E +T+S+NA+ S Sbjct: 42 LIERDTGEVLFEKDSDNMLPPASMTKIMTMLLIMEAIEEGTIKYEDMVTVSENAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M++D+ LK + + S ND AVA+AE + TE++FV+ MN + LGL T F Sbjct: 102 QVFLEPGEEMSVDDLLKAIAIASGNDAAVAMAEHIGGTEQEFVKMMNAKAAELGLENTQF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 N +G+ + HY++A D+A+++ + T + + KG + K NTN V Sbjct: 162 QNPNGLPEADHYSSAHDLAVMAKELLKYENITSYTGIYEDYLRKGTD-KEFWLVNTNKLV 220 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTGFT + + + A+A + +IAV++GA RN ++L + Sbjct: 221 KFYPGVDGLKTGFTQEAKYGLTATAEKNGMRVIAVVMGAKTPKERNATITNMLDYSYS-- 278 Query: 268 TDRKKINYIIKDFYQQ-NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 +Y + +++ +L EVP I + KD+ I E + Sbjct: 279 ------HYSTERLHERGDLIGEVPVI-------------------KGKDRHVQAITPEPV 313 Query: 327 TLLKNKITK 335 +LL K TK Sbjct: 314 SLLLKKGTK 322 >gi|152978379|ref|YP_001344008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus succinogenes 130Z] gi|150840102|gb|ABR74073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus succinogenes 130Z] Length = 395 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+Y V +K+ K +TI +++ Sbjct: 43 YILMDYNSGAVLAAFNPDQRQYPASLTKMMTSYAVGDAMKQGKIHPNDQVTIGESSWGKN 102 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +IV S ND VA+AE + + ++FV MN + GL Sbjct: 103 FPGSSKMFLNLNQQVSVADLNRGVIVVSGNDACVALAEHVSGSTEQFVALMNKYVQQFGL 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMA++ RI D P+ + K K PN N Sbjct: 163 KNTNFTTPHGLDDPNQYSSARDMALIGIRIIHDLPEEYKIYAEKDFTFNKIKQPNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 223 WD--KSMNVDGMKTGHTSQAGYNLVASATNANNMRLISVVMGVPTYKGREVESKKLLQWG 280 Query: 264 F 264 F Sbjct: 281 F 281 >gi|160915294|ref|ZP_02077507.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991] gi|158433093|gb|EDP11382.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991] Length = 414 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 26/279 (9%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLTK 58 L ++ + + +++ P + E + + L++ +G VI + + PAS+TK Sbjct: 34 LALVVLCLSASLLPITARKEVSDVGLKGDAKSVYLMEYTSGKVIYAEHENKRLYPASMTK 93 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +M +++ L + + L +T S+ A+ S + T++ ++ +K + + SAND Sbjct: 94 MMGLLLIYEALHDGQLQLDDMVTTSEFAASMGGSQVFLEPQETLSAEDMIKSICIASAND 153 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS---- 174 VA+ E L + + FV MN +K LG++ THFMNA G+ HYTTA+DMA+L Sbjct: 154 AMVAMGEHLAGSHEAFVNKMNRKAKELGMNNTHFMNATGLHDDKHYTTAKDMALLGQALL 213 Query: 175 -------WRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASG 225 +I + + Y+ E KK+ NTN + G DG+KTGFT + Sbjct: 214 KEGGEELLKITSTYDAYIR-------EDSDKKFWLVNTNKLLKQVEGVDGLKTGFTKEAL 266 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 I SA + + LIAV++GA + RN +++ LL GF Sbjct: 267 SCITVSAKRKELRLIAVVMGASNAKARNAIASGLLEYGF 305 >gi|169795187|ref|YP_001712980.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii AYE] gi|213158149|ref|YP_002320200.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Acinetobacter baumannii AB0057] gi|215482735|ref|YP_002324933.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB307-0294] gi|239501150|ref|ZP_04660460.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB900] gi|260556667|ref|ZP_05828885.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606] gi|301346852|ref|ZP_07227593.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB056] gi|301511131|ref|ZP_07236368.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB058] gi|301596416|ref|ZP_07241424.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB059] gi|169148114|emb|CAM85977.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii AYE] gi|193077945|gb|ABO12853.2| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii ATCC 17978] gi|213057309|gb|ACJ42211.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Acinetobacter baumannii AB0057] gi|213987778|gb|ACJ58077.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB307-0294] gi|260409926|gb|EEX03226.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606] Length = 382 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|169632895|ref|YP_001706631.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii SDF] gi|169151687|emb|CAP00477.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii] Length = 382 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|291522275|emb|CBK80568.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7] Length = 430 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 11/245 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E D +PAS+TK+MT +++ L K LT + S A S Sbjct: 76 LMEAGTGTVIYEKNQDVRVSPASITKIMTLLLIYDALYNGKIQLTDEVVTSARAKSMGGS 135 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G T++ +K +++ S ND +VA+AE + +E+ FV MN + +LG++ THF Sbjct: 136 QVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYVSGSEEAFVGEMNQKAADLGMNGTHF 195 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYP 201 ++ G+ + HYTTA+D+AI++ + T++P Y I KG G Sbjct: 196 VDCCGLTDSNDHYTTAKDVAIMARALITNYPDISQYATIWMENITHVTAKGSSEFGLSNT 255 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + G+KTG T +G+ +A++ SLIAV++ A D R + LL+ Sbjct: 256 NKLLKMANNFEVTGLKTGSTAKAGYCFCGTAVKDGLSLIAVVMDAPDYKIRFSEAQQLLN 315 Query: 262 MGFYN 266 GF N Sbjct: 316 YGFAN 320 >gi|261405987|ref|YP_003242228.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] gi|261282450|gb|ACX64421.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] Length = 396 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 127/240 (52%), Gaps = 4/240 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG +I E PAS+TK+MT + + E + T + S+ A+ S Sbjct: 49 LLDADTGTIIYEKNSHDKLPPASITKVMTMLLTMEAIDEGQLKWTDKVRTSEYAASMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF Sbjct: 109 QIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWR-IKTD-FPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 +N +G+ HYT+A D+A++S +K D +Y +Q + K + NTN V Sbjct: 169 VNCNGLPAENHYTSAHDIAVMSRELLKYDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVR 228 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + GADG+KTG+T + F + A+A + +AV++GA D TRN + + F T Sbjct: 229 FYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYT 288 >gi|322383131|ref|ZP_08056958.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152793|gb|EFX45419.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 414 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 32/286 (11%) Query: 21 SIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + A+ N++P L++ NTG V+ EN D PAS++K+MT Y++ +K+ K Sbjct: 15 AAADANEIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTEYLIMEAIKDGKIK 74 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + +SK A+ S +G +++ + + + S+ND +VA+AE L TE++F Sbjct: 75 WEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVAMAEYLGGTEEEFA 134 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQH--GHYT----------TARDMAILSWRIKTDFP 182 MN +K LGLS HF+NA G+ + G Y TARD AIL+ I D P Sbjct: 135 NMMNKKAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARHIVLDHP 194 Query: 183 QYMHYFQIKGLEIKG-KKYP--NTNWAVG-----------TFLGADGMKTGFTCASGFNI 228 Q + + + +++ K P N NW + + G DG+KTG T +G+ Sbjct: 195 QVLEFTKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNEAGYCF 254 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +A +GD LI+V++G R + + +L GF N RK ++ Sbjct: 255 TGTAQRGDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLD 300 >gi|184158962|ref|YP_001847301.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|183210556|gb|ACC57954.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|322508944|gb|ADX04398.1| dacC [Acinetobacter baumannii 1656-2] gi|323518930|gb|ADX93311.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii TCDC-AB0715] Length = 382 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|154483610|ref|ZP_02026058.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC 27560] gi|149735520|gb|EDM51406.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC 27560] Length = 387 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++++TG V+ EN + +PAS+TK+MT ++F + K LT T S A S Sbjct: 36 LMESSTGMVLYENNQNEKLSPASITKIMTLVLIFDAIHSGKIKLTDVATTSAYAKSMGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G T T++ +K +I+ S ND +V +AE + +E+ FV+ MN +K+LG++ THF Sbjct: 96 QVFLEEGETQTVETLIKCIIIASGNDASVVMAEMIAGSEEAFVKKMNERAKSLGMNNTHF 155 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKK---YPNT 203 ++ G+ HYTTA+D+A++S + +P+ Y I I G+K NT Sbjct: 156 IDCCGLTDSDDHYTTAKDVALMSRELIEKYPEIFKYSTIWMESITHKTKAGEKEFVLSNT 215 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + T G+KTG T + + + A + LIAV++ A D R K S L++ G Sbjct: 216 NKLLKTNQYVKGLKTGSTSKAKYCVSTVAEKDGVQLIAVVMAAPDYKIRFKESEKLINYG 275 Query: 264 FYN 266 F N Sbjct: 276 FSN 278 >gi|317491387|ref|ZP_07949823.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920934|gb|EFV42257.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 402 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G ++ E D +PASLTK+M +YV+ +K K + + K+A + Sbjct: 44 YVLMDYDSGKILTEANADERLDPASLTKIMASYVIGQSIKAGKITPNDMVVVGKDA--WA 101 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN Sbjct: 102 TGNPILRGSSLMFLKPGDRVPVSELNKGVVIQSGNDASIALADYVAGSQDAFVSLMNKYV 161 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + GL T F HG+ G Y++ARDMA++S R+ D P + K + N Sbjct: 162 EAWGLKNTSFKTVHGLDSEGQYSSARDMALISQRLIADVPDEYALHKEKEFTFNKIRQVN 221 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + L DG+KTG+T +G N+V+SA G LI+V+LGA R + S L Sbjct: 222 RNRLLW--DSSLNVDGIKTGYTSGAGHNLVSSATDGPMRLISVVLGAPTDRIRFEESKKL 279 Query: 260 LSMGF 264 L+ GF Sbjct: 280 LTWGF 284 >gi|225174857|ref|ZP_03728854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169497|gb|EEG78294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 389 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 10/243 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ EN PAS+TK+MT + L+E K + +S+ A+ + S Sbjct: 37 LMDVGSGEVLYENNIHEQLYPASVTKIMTMLLAMEALEEGKVKPDDLVPVSEAAAAHGGS 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +T ++ + + V SAND + A+AE L + FV MN ++ LG++ T+F Sbjct: 97 QIFLSPGDRITFEDLMIGIGVGSANDGSWAMAEFLAGSADAFVTQMNEKARELGMNNTNF 156 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGK-------KYPNT 203 MN HG+ HYTTA D+A++S R +P+ + I E +KGK N Sbjct: 157 MNPHGLHDENHYTTAYDIALMS-RELLRYPKIHEWITIWMDEEFLKGKIQKEEGVYLSNA 215 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N V + G DG+KTGFT +G + A+A +GD +AVILGA R + +LL G Sbjct: 216 NRIVRYYDGGDGLKTGFTSEAGNCVSATAKRGDTRFMAVILGAPGRPALFDEAKTLLDYG 275 Query: 264 FYN 266 F N Sbjct: 276 FAN 278 >gi|321311824|ref|YP_004204111.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|320018098|gb|ADV93084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 389 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L + K ++ + S++A+ S Sbjct: 42 LIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FVQ MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVQKMNKKAKELGLKNTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GHY++A DMAI L + T F Y Y + E KK+ NTN Sbjct: 162 KNPTGLTEEGHYSSAYDMAIMAKELLKYESITKFTGTYEDYLR----ENTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAF 277 >gi|332874743|ref|ZP_08442613.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] gi|332737004|gb|EGJ67961.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] Length = 397 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 49 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 106 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 107 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 167 GMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 227 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFA 286 Query: 266 N 266 N Sbjct: 287 N 287 >gi|332857068|ref|ZP_08436374.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332870006|ref|ZP_08438982.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] gi|332726883|gb|EGJ58397.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332732506|gb|EGJ63757.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] Length = 397 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 49 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 106 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 107 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G++ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 167 GMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 227 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFA 286 Query: 266 N 266 N Sbjct: 287 N 287 >gi|295399047|ref|ZP_06809029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus thermoglucosidasius C56-YS93] gi|294978513|gb|EFG54109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus thermoglucosidasius C56-YS93] Length = 393 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E + PAS+TK+MT ++ + + + + S+ A+ S Sbjct: 46 LIERDTGAVLYEKNANEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F Sbjct: 106 QIFLEPGEEMTVDELLRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 NA G+ GHY++A DMAI++ + D +Y ++ E KK+ NTN V Sbjct: 166 QNATGLPAKGHYSSAHDMAIMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVK 225 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A + +IAV+ GA RN +L F Sbjct: 226 FYPGVDGLKTGFTSEAKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAF 281 >gi|89895051|ref|YP_518538.1| hypothetical protein DSY2305 [Desulfitobacterium hafniense Y51] gi|219669462|ref|YP_002459897.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|89334499|dbj|BAE84094.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539722|gb|ACL21461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 380 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ E PAS+TKLMT V ++ + LT +T S+ AS S Sbjct: 38 LMDAKSGQILFEKEIHKELPPASVTKLMTLLVAAEAVESGRVSLTDKVTASEGASSLGGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T +L+ L + V SAND A+ E + T + FV+ MN +K +G + THF Sbjct: 98 QIYLEPGETFSLEEMLISIAVGSANDACYAVGEHISGTHEAFVEEMNKKAKEIGANHTHF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 +NA+G+ GHYT+A D+A++ R +P +K +++G K+ NTN + + Sbjct: 158 VNAYGLPAQGHYTSAYDLALMG-REALKYPLVRKLTNMKEYDLRGGKFKLWNTNKLLWWY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG KTG+T + + + ++ + LIAV++G S L + GF N Sbjct: 217 EGADGFKTGWTSEANYCLASTVERDGLRLIAVVMGVPQVRGHFTESMKLYNYGFAN 272 >gi|118443387|ref|YP_878099.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118133843|gb|ABK60887.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 392 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 150/283 (53%), Gaps = 18/283 (6%) Query: 4 FLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FLV+ M+ + N+ + A + L++ TG +I E + PAS+TK+MT Sbjct: 12 FLVVTLMSQICVVNVMAAENTALDVEAKAGLLMEPTTGKIIFEKNVHEKFAPASVTKIMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSAND 118 + + K LT + +S+NA + + S+ G T+++ LK + + S ND Sbjct: 72 MLLTMEAVDSGKIKLTDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGND 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + +E FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S Sbjct: 132 AATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSKEGHLTSAYDISIMSR--- 188 Query: 179 TDFPQYMHYFQIKGLEI----KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + ++ + G + +G+K P N N V + G DG+KTGFT + + I A Sbjct: 189 -ELLKHKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISA 247 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +A++ + ++A+I+GA RN+ ++ L++ GF +K + KK+ Sbjct: 248 TAVRDNIRMLAIIVGAPTYKIRNRDASMLMNYGF-SKFESKKV 289 >gi|254693780|ref|ZP_05155608.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella abortus bv. 3 str. Tulya] Length = 361 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 114/210 (54%), Gaps = 1/210 (0%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASL K+MT Y+ F LK + + ISKNA+ K G T++ +A+ +I Sbjct: 13 PASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMI 72 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMA 171 + SAND A + E L +E F + M ++ +G+ +T F N G+ + TTARDMA Sbjct: 73 IVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMA 132 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +L ++ DFP+ F + +G+ Y N + + G DG+KTG+T SG+N+V+S Sbjct: 133 VLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSS 192 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLS 261 A ++ L+ V+LGA R+ A LL+ Sbjct: 193 AYINNRHLVGVVLGAGSAGQRDGQMAKLLT 222 >gi|119384875|ref|YP_915931.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] gi|119374642|gb|ABL70235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] Length = 385 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 15/279 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R F +++ +A+ + F +TN + + D TG V+ E D P PAS++KLMT Sbjct: 7 RIFALLMVLALPARAF------DTNARAAW-VYDVATGTVLMEKNADEPLPPASMSKLMT 59 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 ++F L + + + T +S A + S + T+++ + +I+ S ND V Sbjct: 60 LNMLFEALHDGRVAMDTTFPVSTKAWQMGGSKMFVEPADRPTVEDLIHGIIINSGNDACV 119 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L TE+ F + MN ++ LG++ +HF+N+ G H + D+ +L+ R+ T+F Sbjct: 120 VVAEGLAGTEEAFARLMNERARQLGMANSHFVNSSGWPDPQHRMSMHDLGLLATRLITEF 179 Query: 182 PQYMHYFQIKGLEIKGK-------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P+ F + KG+ + P G + ADG+KTG T +G+ +V SA+Q Sbjct: 180 PELYKNFALTEYNYKGRVPSNAGNRNPLLRLGTGDW-KADGLKTGHTQEAGYGLVGSAVQ 238 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 GD+ ++ VI G R + + +++ + T R I Sbjct: 239 GDRRIVFVITGLSSEKARAEEAEQIVNWAYRQFTMRTII 277 >gi|51892723|ref|YP_075414.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51856412|dbj|BAD40570.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 401 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 16/241 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E +PAS TK++TA + ++ L +T+SK A++ P S Sbjct: 51 LMDAATGDVLWERNAHVRLHPASTTKVLTALIAL-----ERGDLDARVTVSKRAAQTPGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G TL + + L++ S ND AVAIAE + + + F MN ++ LG +HF Sbjct: 106 SMYLREGEVHTLHDLVHGLLMLSGNDAAVAIAEHIAGSVEAFADLMNERAERLGARNSHF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYP--NTNWA 206 +N HG+ H +TA D+A+++ R P + E+ G+K NTN Sbjct: 166 VNPHGLTHPEHLSTAYDLAVIT-RAALQNPLFAEIVAAPQKELTYEELGRKVVLYNTNRL 224 Query: 207 V-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G GADG+KTG T A+G ++ASA + DQ LIAV+L A + R + SA+LL GF Sbjct: 225 LRGGLPGADGVKTGTTGAAGPCLIASATRDDQKLIAVVLNA---SNRWRESAALLEWGFR 281 Query: 266 N 266 N Sbjct: 282 N 282 >gi|312110348|ref|YP_003988664.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1] gi|311215449|gb|ADP74053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1] Length = 393 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E + PAS+TK+MT ++ + + + + S+ A+ S Sbjct: 46 LIERDTGAVLYEKNANEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F Sbjct: 106 QIFLEPGEEMTVDELLRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 NA G+ GHY++A DMAI++ + D +Y ++ E KK+ NTN V Sbjct: 166 QNATGLPAKGHYSSAHDMAIMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVK 225 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A + +IAV+ GA RN +L F Sbjct: 226 FYPGVDGLKTGFTSEAKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAF 281 >gi|145629114|ref|ZP_01784913.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae 22.1-21] gi|144978617|gb|EDJ88340.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae 22.1-21] Length = 393 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|146296751|ref|YP_001180522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410327|gb|ABP67331.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family S11 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 384 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E PAS+TK+MT ++ +++ K L+ + S+NA+ S Sbjct: 44 LVDFDTGRVLFEKNSHEKLPPASITKIMTMILICEAIEKGKLKLSDKVIASQNAASLGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE L + + FV MN +K LG+ T+F Sbjct: 104 QVYLKENEEMTVEELLKSIAIASANDACVALAEHLAGSVQGFVYMMNQKAKELGMLDTNF 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ GHYT+A D+A++S + +Y ++ K+ NTN V + Sbjct: 164 VNPYGLDAEGHYTSAYDVAVMSREL-LKHKLVRNYLTTWVDTVRDGKFGLTNTNKLVRFY 222 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F I ASA + LIAVI+ A D TR + LL GF N Sbjct: 223 RGCTGVKTGSTDKAKFCISASAQRNALHLIAVIMAAPDSKTRFNEAVRLLDWGFAN 278 >gi|229845375|ref|ZP_04465506.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 6P18H1] gi|229811683|gb|EEP47381.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 6P18H1] Length = 393 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|68248580|ref|YP_247692.1| penicillin-binding protein 5 [Haemophilus influenzae 86-028NP] gi|68056779|gb|AAX87032.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 86-028NP] Length = 393 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|145639682|ref|ZP_01795285.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII] gi|145271239|gb|EDK11153.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII] gi|309750652|gb|ADO80636.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Haemophilus influenzae R2866] Length = 393 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|255066778|ref|ZP_05318633.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC 29256] gi|255048853|gb|EET44317.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC 29256] Length = 417 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ V+A N D PASLTK+MTAY+ F L+ +T+S + Sbjct: 66 YIVTDLHSHQVLASNNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149 S ++ + +K +IV+S ND A +AE++ + FVQ MN +K LG++ Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N + Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T ++G+N+ AS+ + + ++++++G R S LL Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLL 296 >gi|213857663|ref|ZP_03384634.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 266 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 11/220 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLN 226 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 N + L DG+KTG T +G+N+VASA +G LI+ Sbjct: 227 RNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLIS 266 >gi|145641831|ref|ZP_01797406.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae R3021] gi|229846948|ref|ZP_04467054.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 7P49H1] gi|145273453|gb|EDK13324.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae 22.4-21] gi|229810032|gb|EEP45752.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 7P49H1] Length = 393 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|164688533|ref|ZP_02212561.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM 16795] gi|164602946|gb|EDQ96411.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM 16795] Length = 383 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 15/279 (5%) Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++F+ +I+ ++ + +F + A N K L+D +G V+ E PA Sbjct: 1 MKKFIGVFLAIILIISQSTLVFADKNGANLNLKCKSAVLMDVTSGKVLYEKNCHEKLPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT ++ ++ K LT +T+S+ AS S + T T+D LK + V Sbjct: 61 SVTKVMTMLLICEAVESNKIKLTDEVTVSETASSMGGSQIFLEPNETQTVDTLLKGIAVA 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND VA+AE + + + FV MNN +K LG+ T+F+N +G+ HYT+A D+A++S Sbjct: 121 SANDACVAMAEYIGGSIEGFVDMMNNKAKELGMKDTNFVNTNGLPVDNHYTSAYDIALMS 180 Query: 175 WRIKTD--FPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFN 227 + +Y+ + K + GKK NTN + + GA G+KTGFT + + Sbjct: 181 RELLKHEMIEKYLTTWMDK--VVVGKKQATIGLANTNKMIKYYNGATGVKTGFTGEAKYC 238 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ASA +G L++V+L R K +++LL GF N Sbjct: 239 VSASAKRGKTHLVSVVLRGETSQERFKDASTLLDYGFAN 277 >gi|148825690|ref|YP_001290443.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE] gi|148715850|gb|ABQ98060.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE] Length = 367 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 15 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 74 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 75 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 134 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 135 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 194 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 195 WD--KTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 252 Query: 264 FYN 266 F N Sbjct: 253 FAN 255 >gi|16272004|ref|NP_438202.1| penicillin-binding protein 5 [Haemophilus influenzae Rd KW20] gi|260580667|ref|ZP_05848494.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae RdAW] gi|1169208|sp|P44466|DACA_HAEIN RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd KW20] gi|260092729|gb|EEW76665.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae RdAW] Length = 393 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|309972837|gb|ADO96038.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Haemophilus influenzae R2846] Length = 393 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|56708118|ref|YP_170014.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670589|ref|YP_667146.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis FSC198] gi|134301929|ref|YP_001121898.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|224457209|ref|ZP_03665682.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370602|ref|ZP_04986607.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis FSC033] gi|254874916|ref|ZP_05247626.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604610|emb|CAG45662.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320922|emb|CAL09045.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. tularensis FSC198] gi|134049706|gb|ABO46777.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568845|gb|EDN34499.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis FSC033] gi|254840915|gb|EET19351.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159318|gb|ADA78709.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis NE061598] Length = 444 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 133/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 199 K---------------------------------YP---------NTNWAVGTFLGADGM 216 K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|57339684|gb|AAW49829.1| hypothetical protein FTT1029 [synthetic construct] Length = 479 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 81 PAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 140 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 141 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 200 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 201 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 260 Query: 199 K--YPNTNWAVG----------------------------------------TFLGADGM 216 K P + A G TF GADGM Sbjct: 261 KQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 320 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 321 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 364 >gi|222529548|ref|YP_002573430.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] gi|222456395|gb|ACM60657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] Length = 386 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E PAS+TK+MT ++ +++ K L+ + S+NAS S Sbjct: 46 LVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 106 QVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMFDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + +L GF N Sbjct: 225 RGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFAN 280 >gi|319774981|ref|YP_004137469.1| penicillin-binding protein 5 [Haemophilus influenzae F3047] gi|317449572|emb|CBY85777.1| penicillin-binding protein 5 precursor [Haemophilus influenzae F3047] Length = 393 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI ++A Sbjct: 41 YVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN 100 Query: 89 YPPSNSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +T +++ + + +IV S ND VA+AE + FV+ MN + GL Sbjct: 101 FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 T+F HG+ Y++ARDMAI+ I D P+ + K K N N Sbjct: 161 KNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLL 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W + DGMKTG T +G+N+VASA + LI+V++G R S LL G Sbjct: 221 W--DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWG 278 Query: 264 FYN 266 F N Sbjct: 279 FAN 281 >gi|312622222|ref|YP_004023835.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] gi|312202689|gb|ADQ46016.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] Length = 386 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E PAS+TK+MT ++ +++ K L+ + S+NAS S Sbjct: 46 LVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K G+ T+F Sbjct: 106 QVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKEFGMLDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + LL GF N Sbjct: 225 RGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280 >gi|312127393|ref|YP_003992267.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] gi|311777412|gb|ADQ06898.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] Length = 386 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+NAS S Sbjct: 46 LVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDRVIASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 106 QIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + LL GF N Sbjct: 225 RGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280 >gi|255320588|ref|ZP_05361766.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter radioresistens SK82] gi|262378578|ref|ZP_06071735.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164] gi|255302350|gb|EET81589.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter radioresistens SK82] gi|262299863|gb|EEY87775.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164] Length = 382 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T ++ L+ +IV+S ND + A+AE + E F MN +K + Sbjct: 92 RGSSSESCMYVPLNGTASVLEMLRGIIVQSGNDASKAVAEHVAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ THF+N+ G+ GH +TA+DMAIL+ I D +Y + K G K N N Sbjct: 152 GMVNTHFVNSTGMPAEGHVSTAKDMAILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +GF + S+ +G LI+VI GA R + LL G+ Sbjct: 212 LLYTDPSVDGLKTGHTDEAGFCLTTSSKRGPMRLISVIFGAPTMQERATQTRDLLGWGYA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|187931647|ref|YP_001891631.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712556|gb|ACD30853.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. mediasiatica FSC147] Length = 444 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 133/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 199 K---------------------------------YP---------NTNWAVGTFLGADGM 216 K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|163795501|ref|ZP_02189467.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] gi|159179100|gb|EDP63633.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] Length = 385 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 119/232 (51%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E PAS+TK+MT ++ F LK+ + +T I IS+NA S Sbjct: 41 LMDYDTGQVLFEKNSTELMPPASMTKIMTVFLAFERLKDGRLKMTDEIPISENAWRKGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GS + L + L +IV+S ND +A+AE++ +E+ F + M ++ +GL + F Sbjct: 101 KMFVEVGSRVVLSDLLMGIIVQSGNDATIALAEAISGSEEAFGELMTTRAREIGLERSVF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N+ G H TA D+A+L+ FP Y F K N N + +G Sbjct: 161 RNSTGWPDPEHRMTAHDLAVLAAETIRRFPDYYSLFSETSFTYNKIKQGNRNPLLYKAMG 220 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G+ + SA +GD+ LI V+ G R+ S L+ GF Sbjct: 221 VDGLKTGHTENAGYGLTVSAKRGDRRLILVVNGLSSVRERSDESERLIEWGF 272 >gi|253682546|ref|ZP_04863343.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D str. 1873] gi|253562258|gb|EES91710.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D str. 1873] Length = 391 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 140/252 (55%), Gaps = 16/252 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I + + PAS+TK+MT + + K L+ + +S+NA + + Sbjct: 42 LMEPSTGKIIYKKNVHEKFAPASVTKIMTMLLTMEAIDSGKIKLSDTVVVSENAKKMGKN 101 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G T+++ LK + + S ND A A+AE + +E +FV+ MN ++ LG+ Sbjct: 102 GSSSMLLDTGEVRTVEDLLKGVAIASGNDAATALAEYIGGSESRFVEMMNKRAQQLGMKD 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYP---- 201 T F N HG+ + GH T+A D++I+S + ++ + G + +G+K P Sbjct: 162 TTFKNCHGLSKEGHLTSAYDISIMSC----ELLKHKKILKYSGTYMETISEGRKNPIELV 217 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V + G DG+KTGFT + + I A+A++ + ++A+I+GA RN+ ++ L++ Sbjct: 218 NHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRNNIRMLAIIVGAPTYKVRNRDASMLMN 277 Query: 262 MGFYNKTDRKKI 273 GF +K + KKI Sbjct: 278 YGF-SKFESKKI 288 >gi|325122968|gb|ADY82491.1| D-ala-D-ala-carboxypeptidase [Acinetobacter calcoaceticus PHEA-2] Length = 382 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRTLLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|302871646|ref|YP_003840282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] gi|302574505|gb|ADL42296.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] Length = 386 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+NAS S Sbjct: 46 LVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVVASQNASSLGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 106 QVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 166 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 224 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F I ASA++ LIAVI+GA D TR + +L GF N Sbjct: 225 RGCTGVKTGSTDKAKFCISASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFAN 280 >gi|83943052|ref|ZP_00955512.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36] gi|83954241|ref|ZP_00962961.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1] gi|83841278|gb|EAP80448.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1] gi|83846060|gb|EAP83937.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36] Length = 389 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 148/303 (48%), Gaps = 26/303 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R F IA +L+ P + + Y ++D TG V+ D P PAS++KLM Sbjct: 2 IRIFAATIATLLLA--LPAQAFETQARAAY--VVDQTTGTVLLTKNADEPLPPASMSKLM 57 Query: 61 TAYVVFSFLKEKKAM----LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+ F ++ K+ LT + +S++A Y S + +++ L+ +IV S Sbjct: 58 TLYMAFEAIERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSG 117 Query: 117 NDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 ND IAE+L +E F + M ++ +G++ + F N++G GH + RD+ +L+ Sbjct: 118 NDACAVIAEALSPDGSEAGFARLMTQRAQQMGMTNSTFANSNGWPAAGHRMSLRDLGLLA 177 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 R+ D+PQY F + G+ N N +G +GADG+KTG T +G+ +V S Sbjct: 178 TRLIEDYPQYYPMFSQREFLFDGRAPQNKTNRNPLLGLGIGADGLKTGHTEEAGYGLVGS 237 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A QGD+ ++ V+ G R + S S+ +N+ + F Q+++ Sbjct: 238 AKQGDRRVVFVLSGLESAAARAQESESI-------------VNWAFRQFSQRSMGKAGTM 284 Query: 292 ISE 294 I+E Sbjct: 285 IAE 287 >gi|160880719|ref|YP_001559687.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160429385|gb|ABX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 450 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TGH+I PAS+TK+MT ++F L + +T +++S++A+ S Sbjct: 102 LMEGSTGHIIYSKNEIKELRPASITKIMTLLLIFDALDSGQIKMTDQVSVSEHAASMGGS 161 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + T +D LK + + SAND +VA+AE + +E+ FV MN +K LG+ T+F Sbjct: 162 QVFLEPFETQDVDTMLKCISIASANDASVAMAEFIAGSEEAFVSKMNQKAKELGMDHTNF 221 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKKYPN 202 +N +G+ HYT A D+A++S + P+ +Y + +G G N Sbjct: 222 VNCYGLDTDNHYTCALDVALMSRELIMKHPEISNYSTVWMDKFVHTTKRGQTEFG--LNN 279 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + ++ G G+KTG T + + + A+A + LIAV++ A D TR +A LL+ Sbjct: 280 TNKLIKSYQGITGLKTGSTGLAKYCLSATARRDGMDLIAVVMAAPDTKTRFAEAAKLLNY 339 Query: 263 GFYN 266 GF N Sbjct: 340 GFAN 343 >gi|293609746|ref|ZP_06692048.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828198|gb|EFF86561.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 397 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 49 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWC 106 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 107 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 167 GMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF Sbjct: 227 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRTLLAWGFA 286 Query: 266 N 266 N Sbjct: 287 N 287 >gi|114327736|ref|YP_744893.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] gi|114315910|gb|ABI61970.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] Length = 419 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 7/253 (2%) Query: 18 PFLSIAETNKLPYYTL------LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P S A T PY T+ +D NTG + + D P+S+TKLMTAY+V+ LK Sbjct: 57 PQGSPANTPFGPYDTVAKWAVVVDFNTGATLLDKEADVQMPPSSMTKLMTAYIVYGELKA 116 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K + + +S+ A S ++ +++ ++ +IV S ND + +AE + +E Sbjct: 117 GKLQMDQMLPVSEKAWRLQGSKMFVPYPGSVKVEDLIRGMIVDSGNDACIVLAEGIAGSE 176 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 ++FV MN +K LGL+ ++F N G+ H+ + RD+A L+ RI DFP+Y H+ K Sbjct: 177 QQFVDLMNQKAKLLGLTNSNFENCTGMPSANHHMSVRDIATLARRIIQDFPEYYHFDSEK 236 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + N N V + ADG+KTG T A G+ + ASA + + +I V+ G + Sbjct: 237 TFKYNNIEQQNRNPLVQKGI-ADGLKTGHTDAGGYGVCASAERNKRRVILVVNGLTTSHQ 295 Query: 252 RNKVSASLLSMGF 264 R S LL F Sbjct: 296 RASESERLLEWAF 308 >gi|89899727|ref|YP_522198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens T118] gi|89344464|gb|ABD68667.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Rhodoferax ferrireducens T118] Length = 414 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 3/237 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D ++G V+A PD P PASLTK+MT+Y+V L+ K T +++S+NA Sbjct: 70 WLLMDFDSGEVLASANPDEPLPPASLTKMMTSYLVEQALRSGKLKQTDLVSVSQNAWCRG 129 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + S T+ + L+ +I++S ND + AIAE + +E+ F + MN + LG+ Sbjct: 130 SSTESCMYLPLNSQATVIDILRGIIIQSGNDASKAIAEHMAGSEEGFAKLMNAEALRLGM 189 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + THF+N G+ H ++ARD+AIL+ I D Y + + + G K N N + Sbjct: 190 THTHFVNPTGLPDPAHKSSARDLAILARAIIHDSVDYYPIYAEREFKYNGIKQGNRNALL 249 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 T DG+KTG T +G+ +V S+ + LI VIL R + +LL GF Sbjct: 250 YTDPTVDGLKTGHTEDAGYCLVTSSKRNGMRLITVILNTHSAQARADETRTLLGWGF 306 >gi|312135356|ref|YP_004002694.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor owensensis OL] gi|311775407|gb|ADQ04894.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor owensensis OL] Length = 384 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+NAS S Sbjct: 44 LVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVIASQNASSLGGS 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+ MT++ LK + + SAND VA+AE + + ++FV MN +K LG+ T+F Sbjct: 104 QIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYIMNKKAKELGMLDTNF 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTF 210 +N +G+ HYT+A D+AI+S R Y I+ K+ NTN V + Sbjct: 164 VNPYGLDAENHYTSAYDVAIMS-RELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFY 222 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G G+KTG T + F + ASA++ LIAVI+GA D TR + LL GF N Sbjct: 223 KGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDAVKLLDWGFAN 278 >gi|143439|gb|AAA22704.1| DD-carboxypeptidase [Bacillus subtilis] Length = 389 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L + K ++ + S++A+ S Sbjct: 42 LIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FV+ MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GHY++A DMAI L + T F Y Y + E KK+ NTN Sbjct: 162 KNPTGLTEEGHYSSAYDMAIMAKELLKYESITKFTGTYEDYLR----ENTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAF 277 >gi|238021408|ref|ZP_04601834.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147] gi|237868388|gb|EEP69394.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147] Length = 418 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 6/247 (2%) Query: 20 LSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 L+ AE K P Y + D + + D PASLTKLMTAY+ F L+E K Sbjct: 54 LNAAEALKQPEIAATAYLVRDLQSNQTLVAKNTDQQIEPASLTKLMTAYLAFKALEEGKL 113 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T+S+ A + S K S + + + ++ LIV S ND A+ +AE + +E+ F Sbjct: 114 QPEQKLTVSEKAWKVEGSRMFLKAHSEVPVWDLMRGLIVVSGNDAAITLAEGIAGSEEAF 173 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGL 193 + MN+ +K LG++ T+F NA G+ H T+ D+AILS I D P +Y + K Sbjct: 174 AKMMNDEAKRLGMTQTYFENATGLPAPKHLTSVNDLAILSNAIIRDLPAKYYEVYSYKSY 233 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N N + DG+KTG T ++G+N++A++ + ++ ++++++GA R Sbjct: 234 TYNNITQENRNLLLFRDDSVDGLKTGHTSSAGYNLIATSKRNNRRVLSIVIGAASAEARA 293 Query: 254 KVSASLL 260 S+ LL Sbjct: 294 TESSKLL 300 >gi|146340768|ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146193574|emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS278] Length = 384 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 6/244 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ +G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA Sbjct: 24 PTAILVEATSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENAWR 83 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNNTS 142 P ST S + + + L I++S ND +A+AE + EK F +M + Sbjct: 84 KGGAPSGTSTMFAALNSKVPVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKRA 143 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGLS + F N++G+ G+ T R++++L+ I DFP++ F K + N Sbjct: 144 RELGLSKSTFANSNGLPDPGNKMTVRELSMLARHIILDFPEFYKIFGEKEFTWNKIRQQN 203 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L Sbjct: 204 RNPLLNAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEW 263 Query: 263 GFYN 266 GF N Sbjct: 264 GFRN 267 >gi|16079405|ref|NP_390229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310266|ref|ZP_03592113.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. 168] gi|221314589|ref|ZP_03596394.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319512|ref|ZP_03600806.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. JH642] gi|221323788|ref|ZP_03605082.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. SMY] gi|34395963|sp|P38422|DACF_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacF; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein dacF; Short=PBP; Flags: Precursor gi|1303997|dbj|BAA12652.1| DacF [Bacillus subtilis] gi|2634783|emb|CAB14280.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 389 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L + K ++ + S++A+ S Sbjct: 42 LIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FV+ MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GHY++A DMAI L + T F Y Y + E KK+ NTN Sbjct: 162 KNPTGLTEEGHYSSAYDMAIMAKELLKYESITKFTGTYEDYLR----ENTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAF 277 >gi|15614098|ref|NP_242401.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus halodurans C-125] gi|10174152|dbj|BAB05254.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus halodurans C-125] Length = 387 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ E D PAS+TK+MT ++ + K + S+NA+ S Sbjct: 40 VIERDTGQVLFEKNSDEKLPPASMTKIMTLLLIMEAIDSGKITYDDMVRTSENAASMGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M++ + +K + + S ND +VA+AE L TE++FV MN ++ LGL T+F Sbjct: 100 QVFLEPGEEMSVRDMIKAIAIASGNDASVAMAEHLAGTEEEFVGMMNEKARQLGLKNTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILS-----WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +N +G+ + HYT+A D+A++S + T+F + KG + K NTN V Sbjct: 160 VNTNGLPEKDHYTSAYDLAMISKELLKYEDITEFTSVYEDYLRKGTD-KEFWLVNTNRLV 218 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A++ +I V++GA RN +L F Sbjct: 219 KFYPGVDGLKTGFTKEAKYCLTATAVKNGMRVITVVMGAPTPKERNSQITEMLDFAF 275 >gi|291484778|dbj|BAI85853.1| penicillin-binding protein [Bacillus subtilis subsp. natto BEST195] Length = 389 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L + K ++ + S++A+ S Sbjct: 42 LIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FV+ MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GHY++A DMAI L + T F Y Y + E KK+ NTN Sbjct: 162 KNPTGLTEEGHYSSAYDMAIMAKELLKYESITKFTGTYEDYLR----ENTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAF 277 >gi|239625716|ref|ZP_04668747.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519946|gb|EEQ59812.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 392 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D +PAS+TK+MT ++F L+ K LT + S +A Sbjct: 35 PSAVLMEASTGQVIYEKGADEKRSPASVTKVMTLILIFDALQSGKINLTDEVVTSAHAKS 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + TE++FV+ MN + LG++ Sbjct: 95 MGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIGGTEEEFVRMMNERAAGLGMT 154 Query: 149 ATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF++ G+ + H TTARD+AI+S + +PQ +Y I +G + G Sbjct: 155 NTHFVDCCGLTESPEHLTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFG 214 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIA I+ A D R + Sbjct: 215 LSNTNKLLKMATNFKVTGLKTGSTSIAKYCLSATAEKDGVRLIATIMAAPDFKARFGDAQ 274 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 275 TLLNYGYAN 283 >gi|260912849|ref|ZP_05919335.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC 43325] gi|260633227|gb|EEX51392.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC 43325] Length = 395 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+A PD PASLTK+MT+YVV LK+ K +TI ++A Sbjct: 43 YILMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKINNNDMVTIGESAWGKN 102 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F +++ + + +I+ S ND +VAIAE + + FV+ MN + GL Sbjct: 103 FPGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVAIAEHVSGSVPAFVEAMNKYVQQFGL 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN--- 204 THF + HG+ Y+++RDMAI+ + D P+ + K K N N Sbjct: 163 KNTHFTSVHGLDDDNQYSSSRDMAIIGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLL 222 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263 W + DG+KTG T +G+N+V+SA + LI+V++G R S LL G Sbjct: 223 W--DKTIQVDGIKTGHTDKAGYNLVSSATNSNNMRLISVVMGVPTIKGREVESKKLLQWG 280 Query: 264 FYN 266 F N Sbjct: 281 FAN 283 >gi|322833272|ref|YP_004213299.1| Beta-lactamase [Rahnella sp. Y9602] gi|321168473|gb|ADW74172.1| Beta-lactamase [Rahnella sp. Y9602] Length = 403 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 16/246 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D N+G ++ E+ PD +PASL+K+M +YVV +K K +++ +A + Sbjct: 43 WVLMDYNSGKILTESNPDARLDPASLSKIMVSYVVGQAIKSGKIKSDDLVSVGNDA--WA 100 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N + S M L ++ ++++S ND ++A+A+ + ++ FV MN + Sbjct: 101 TGNPVLRGSSLMFLKPGDRVPVSELNKGIVIQSGNDASIALADFVAGSQDSFVNLMNRYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L L THF HG+ G YT+A DMA+LS + D P + K K N Sbjct: 161 EQLKLQNTHFKTVHGLDADGQYTSATDMALLSQALIRDTPDEYALHKEKEFTFNHIKQIN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSAS 258 N W+ + L DG+KTG+T +G+N+V+SA LIAV++GA R S S Sbjct: 221 RNRLLWS--SNLNVDGIKTGYTSGAGYNLVSSASDSTGMRLIAVVMGAPSDRIRFNESES 278 Query: 259 LLSMGF 264 LL+ GF Sbjct: 279 LLTWGF 284 >gi|220929171|ref|YP_002506080.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219999499|gb|ACL76100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 408 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E AS+TK+MT +V + + +++S+ ++ S Sbjct: 63 LMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAGRFTFDEKVSVSEYSAGMGGS 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++ LG+ T F Sbjct: 123 QAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGMKDTKF 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 M+ G+ G Y+TA D+A++S + P+ + + + + NTN V + Sbjct: 183 MDCTGLNDDG-YSTAHDVALMSRELVIKHPKVLQFTGKWHDTFRNGTFDLYNTNKLVKFY 241 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+KTGFT +GFN+ A+ I+ + LI+V+LG D NTR S LL GF N Sbjct: 242 ANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLGEPDSNTRFAESRKLLDYGFAN 297 >gi|266624787|ref|ZP_06117722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288863335|gb|EFC95633.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 410 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D +PAS+TK+MT ++F L K +T + S +A Sbjct: 55 PSALLMEASTGQVIYEKDADTKRSPASITKIMTLILIFDALDSGKIKMTDEVVTSAHAKS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T T++ +K ++V S ND +VA+AE + TE++FV+ MN + LG++ Sbjct: 115 MGGSQVFLEEGETQTVETMIKCIVVASGNDASVAMAEYIAGTEEEFVKMMNERAAGLGMT 174 Query: 149 ATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF + G+ + H TTARD+A++S + +PQ +Y I +G + G Sbjct: 175 NTHFEDCCGLTESPDHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFG 234 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIA I+ A D R + Sbjct: 235 LSNTNKLLKMATNFQVTGLKTGSTSLAKYCLSATAEKDGVRLIASIMAAPDYKARFADAQ 294 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 295 TLLNYGYAN 303 >gi|262368687|ref|ZP_06062016.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046] gi|262316365|gb|EEY97403.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046] Length = 382 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL------KEKKAMLTTPITISK 84 Y L+D TG ++A + PAS+TK+MT++++ L +++K + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSFIIEQKLLAGELTEDEKVRMNESAWCRG 93 Query: 85 NASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 ++SE Y P N T T L+ +I++S ND + A+AE + E FV MN Sbjct: 94 SSSESCMYVPLNGT------ATALEMLRGIIIQSGNDASKAMAEHIAGNEGTFVHMMNTE 147 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K +G++ T FMN+ G+ GHY+TA+DMA L+ I D +Y + K G K Sbjct: 148 AKRIGMTNTSFMNSTGMPAEGHYSTAKDMATLAQHIIHDSSKYYPIYSEKEFTFNGIKQG 207 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + T DG+KTG T +G+ + SA +G LI+VI GA R + +L+ Sbjct: 208 NRNALLYTDPSVDGLKTGHTDEAGYCLTTSAKRGPMRLISVIFGAPSMQERATQTREILA 267 Query: 262 MGFYN 266 G+ N Sbjct: 268 WGYAN 272 >gi|255100309|ref|ZP_05329286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-63q42] Length = 387 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 9/241 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ E PAS+TK+MT ++ L K L + +S+ AS S Sbjct: 43 LMDVGSGQILYEKDAHKKLPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T +D LK + V SAND VA+AE L + + FV MN +K L ++ THF Sbjct: 103 QIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK-----YPNTNW 205 N +G+ HYT+A D+A++S + +Y+ + K + GKK NTN Sbjct: 163 ANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDK--VVVGKKQVTVGLANTNK 220 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + GA G+KTGFT + + + ASA +G+ L+A LGA R ++SLL+ GF Sbjct: 221 LIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|126698888|ref|YP_001087785.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile 630] gi|254974836|ref|ZP_05271308.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-66c26] gi|255092224|ref|ZP_05321702.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile CIP 107932] gi|255306248|ref|ZP_05350420.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile ATCC 43255] gi|255313963|ref|ZP_05355546.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-76w55] gi|255516643|ref|ZP_05384319.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-97b34] gi|255649742|ref|ZP_05396644.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-37x79] gi|260682898|ref|YP_003214183.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260686496|ref|YP_003217629.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|306519851|ref|ZP_07406198.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] gi|115250325|emb|CAJ68147.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile] gi|260209061|emb|CBA62190.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile CD196] gi|260212512|emb|CBE03449.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile R20291] Length = 387 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 9/241 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ E PAS+TK+MT ++ L K L + +S+ AS S Sbjct: 43 LMDVGSGQILYEKDAHKKLPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T +D LK + V SAND VA+AE L + + FV MN +K L ++ THF Sbjct: 103 QIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK-----YPNTNW 205 N +G+ HYT+A D+A++S + +Y+ + K + GKK NTN Sbjct: 163 ANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDK--VVVGKKQVTVGLANTNK 220 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + GA G+KTGFT + + + ASA +G+ L+A LGA R ++SLL+ GF Sbjct: 221 LIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|297539773|ref|YP_003675542.1| beta-lactamase [Methylotenera sp. 301] gi|297259120|gb|ADI30965.1| Beta-lactamase [Methylotenera sp. 301] Length = 390 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 124/235 (52%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D N+ +VIA PASLTK+MTAY+ F LK LT + +S+ A + Sbjct: 47 YLLKDFNSNYVIASQNSSMRIEPASLTKIMTAYLAFKALKNGHLSLTQTLPVSELAWKVE 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+D L I++S ND ++A+AE + TE +F MN + LG+ T Sbjct: 107 GSKMFIEPNKPVTVDELLHGTIIQSGNDSSIALAEGIAGTEPQFADMMNKEAARLGMKNT 166 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGT 209 H+MNA G+ H+TTA D+A L+ + DFP QY + +K PN N + Sbjct: 167 HYMNATGLPDAQHFTTADDLATLAAALIRDFPDQYQRLYSVKEYTYNKITQPNRNRLLWA 226 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DGMKTG T +G+ ++ASA + I+V+LGA + R S LL+ GF Sbjct: 227 DPNVDGMKTGHTETAGYCLIASAKRDGTRRISVVLGAPTDSARASESQKLLNYGF 281 >gi|296332281|ref|ZP_06874743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674982|ref|YP_003866654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150595|gb|EFG91482.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413226|gb|ADM38345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 389 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + PAS+TK+MT ++ L E K ++ + S++A+ S Sbjct: 42 LIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDEGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FV+ MN ++ LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKARELGLKNTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GH+++A DMAI L + T F Y Y + E KK+ NTN Sbjct: 162 KNPTGLTEEGHFSSAYDMAIMAKELLKYESITKFTGTYEDYLR----ENTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDFAF 277 >gi|154500121|ref|ZP_02038159.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC 29799] gi|150271211|gb|EDM98480.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC 29799] Length = 383 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 2/238 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E PAS+TK+MT +V + + L +TIS +A S Sbjct: 40 LMEKETGTILYEQNSHDKLEPASVTKIMTLLLVMEAVDSGRISLDQTVTISAHAVSMGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+G MT+ + LK + V SAND AVA+AE + +E+ FV MN + LG++ T F Sbjct: 100 QIWLKEGEQMTVHDLLKAVAVVSANDGAVALAELVAGSEEGFVALMNQRAAELGMADTTF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWAVGTF 210 +N G+ GH T+A D+A++S + + P Y I L + NTN + + Sbjct: 160 VNCTGLPAAGHLTSAHDIALMSRELILNHPSIREYTTIWMDSLRDGAFQLTNTNKLIRFY 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 GA G+KTG T ++ + + A+A +G LIAV+L + R + +LL GF N T Sbjct: 220 DGATGLKTGSTDSALYCLSATAERGGMELIAVVLKSPTSQDRFDAARALLDYGFANYT 277 >gi|167628449|ref|YP_001678948.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] gi|167591189|gb|ABZ82937.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] Length = 386 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 6/242 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D TG ++ E PAS+TKLMT V F +++ KA L + S+ A E Sbjct: 39 VLMDPTTGAILFEKNSHKRVAPASVTKLMTLLVAFEAIEQGKASLDDKVVTSQRAFEMGG 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + G M + + L + V SAND VA+AE + + + +V MN +++LGL TH Sbjct: 99 SQIYLEPGEEMVMRDLLISIAVHSANDACVAVAEHISGSYEAYVDDMNKKAQSLGLKDTH 158 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA 206 FMN HG+ HYT+A DMA+++ R P M + IK +I K + N N Sbjct: 159 FMNPHGLPVDNHYTSAHDMAVIA-REALKHPTLMQFVAIKHHKIRESSSKPMQLDNHNRL 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G DG KTG+T + + +V++ + + LIA + G + K S L + GF Sbjct: 218 LWWYPGTDGFKTGWTSEAKYCLVSTVERDNLRLIASVFGVPEIRGHFKESMKLYNYGFSR 277 Query: 267 KT 268 T Sbjct: 278 YT 279 >gi|310639559|ref|YP_003944317.1| d-ala-d-ala carboxypeptidase [Paenibacillus polymyxa SC2] gi|309244509|gb|ADO54076.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa SC2] Length = 462 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+++NAS+ S Sbjct: 75 LIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKSIGS 134 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + TE+ FV+ MN T++ +G+ T+F Sbjct: 135 RIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKNTYF 194 Query: 153 MNAHGVVQHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KK 199 +N+ G+ + T TARD A L+ I D P Y + I+ + + K Sbjct: 195 INSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRPTDK 254 Query: 200 YP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 P N NW + + G DGMKTG T +G +A + LI+V++GA Sbjct: 255 APIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVVMGA 314 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R +A +L+ GF N Sbjct: 315 DSDAHRFTETAKVLNYGFDN 334 >gi|317132116|ref|YP_004091430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense YUAN-3] gi|315470095|gb|ADU26699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense YUAN-3] Length = 419 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + +TG ++ EN P PAS++K+MT +V ++ K T +++S +AS S Sbjct: 79 LAEQSTGRILYENNPHEKMYPASISKIMTELLVLEAIENGKLHFTDKVSVSAHASSMGGS 138 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G MT+ + K ++V SAND AVA+AE + +E FV MN +K LG++ T+F Sbjct: 139 DIWLEPGEVMTVLDLFKAMVVNSANDAAVALAEKVAGSEPAFVNLMNRKAKELGMNDTNF 198 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 NA G+ G+ T+A D+ ++S R + +Y I ++G K NTN + + Sbjct: 199 TNATGLDADGNLTSAYDVMLMS-RELLRHKEIFNYTTIWMDSLRGGKTALFNTNRLIRFY 257 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GA+G+KTG T +G+ + +A++ LIAV++ R + +LL GF N Sbjct: 258 QGANGLKTGSTGKAGYCLSGTALRDGMQLIAVVMNCPTLQERFTAAGTLLDYGFAN 313 >gi|296445856|ref|ZP_06887808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296256684|gb|EFH03759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 400 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 11/252 (4%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 +P+ L+D T V+ E D PAS K+MTA +VF + E + L T+S++A Sbjct: 39 VPHAILVDAGTHTVLLEKAADDFVTPASTVKVMTAEIVFHEIAEGRLKLDDEFTVSEHAW 98 Query: 88 EYPPSNSTFKKGSTMTL--------DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 S GS M L ++ ++ L++ S ND A+ +AE + +E+ FV MN Sbjct: 99 R---SGGAPAGGSAMFLPVNSRAKVEDLIRGLVIVSGNDAAITLAEGVAGSEEAFVGRMN 155 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LGL+ + F N G T R+M L+ + +P + YF K + Sbjct: 156 KRASELGLAKSIFGNPWGQAGPDQKVTPREMVQLAAHVIETYPDFYRYFGEKEFTWNKIR 215 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + LGADG+KTG +SGF +V SA+Q D+ LI + GA R + + L Sbjct: 216 QQNRNPLLTMSLGADGLKTGNIDSSGFGLVGSAVQDDRRLIVAVYGAKTAKERAEEARKL 275 Query: 260 LSMGFYNKTDRK 271 L GF N +++ Sbjct: 276 LQWGFRNFEEKQ 287 >gi|294501138|ref|YP_003564838.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551] gi|294351075|gb|ADE71404.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551] Length = 388 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 21/277 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E + PAS+TK+MT ++ L + K L + S+ A+ S Sbjct: 41 LIERDTGKILYEKNSNQELPPASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + + S ND ++A+AE L +E+KFV MN +K LGL+ T F Sbjct: 101 QIFLEPGEEMTVNDLLKGIAIGSGNDASMAMAEYLAGSEEKFVAKMNQKAKELGLTHTQF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAV 207 N G+ HY+TA DMA++ + + Y +I K + Y T+ W V Sbjct: 161 QNPTGLPVENHYSTAHDMAMMGREL-------LKYEKIINYTSKYEAYLRTDTDKKFWLV 213 Query: 208 GT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 T + G DG+KTGFT + + + A+A +G+ ++AV+ GA RN +L Sbjct: 214 NTNRLVKFYPGVDGLKTGFTGQAKYCLTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLD 273 Query: 262 MGFYNKTDR---KKINYIIKDFYQQNLSNEVPNISEE 295 F T + KK + I K + ++V ++ E Sbjct: 274 YAFSQYTTKPLYKKGDVITKIDVNKGSEDQVTAVTSE 310 >gi|254369366|ref|ZP_04985378.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica FSC022] gi|157122316|gb|EDO66456.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica FSC022] Length = 444 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 199 K---------------------------------YP---------NTNWAVGTFLGADGM 216 K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+S Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|89256395|ref|YP_513757.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. holarctica LVS] gi|115314839|ref|YP_763562.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica OSU18] gi|156502486|ref|YP_001428551.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010417|ref|ZP_02275348.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FSC200] gi|254367733|ref|ZP_04983754.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Francisella tularensis subsp. holarctica 257] gi|290953818|ref|ZP_06558439.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica URFT1] gi|295312829|ref|ZP_06803561.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica URFT1] gi|89144226|emb|CAJ79499.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. holarctica LVS] gi|115129738|gb|ABI82925.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica OSU18] gi|134253544|gb|EBA52638.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Francisella tularensis subsp. holarctica 257] gi|156253089|gb|ABU61595.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 444 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 199 K---------------------------------YP---------NTNWAVGTFLGADGM 216 K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+S Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|114770997|ref|ZP_01448437.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HTCC2255] gi|114548279|gb|EAU51165.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HTCC2255] Length = 382 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ D PAS++KLMT +++F L++++ + T +S+ A++ S Sbjct: 32 VIDQTTGTILMAKDADRRVPPASMSKLMTLFMLFEALRDERIAMDTEFLVSERATKIGGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G +++ + ++ +IV+S ND + +AE++ TE F M + LG++ + F Sbjct: 92 TMFLREGERVSVRDLIQGIIVQSGNDACITVAENIAGTETAFADQMTKRAIELGMNNSSF 151 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N+ G +ARD+ ++ I T+FP Y +F G K N N + +G Sbjct: 152 GNSTGWPDPLQRMSARDLVTIANIIITEFPNYYPFFAQTSFTWDGVKQNNRNPLLPLGIG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADG+KTG T +G+ +V SA QG + +I +I G + R + L + F Sbjct: 212 ADGLKTGHTNEAGYGLVGSARQGQRRIIFMITGLESKAARANEAEKLTNWAFR------- 264 Query: 273 INYIIKDFYQQN 284 ++IKD ++++ Sbjct: 265 -QFVIKDLFKKD 275 >gi|169333947|ref|ZP_02861140.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM 17244] gi|169259512|gb|EDS73478.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM 17244] Length = 392 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 14/242 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E D AS+TK+MT ++ + K ++ +TIS AS+ S Sbjct: 43 LMDVGTGKVLYEKNKDEKLPLASVTKVMTILLILEAVNNKTINMSDMVTISDYASKMGGS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G ++D L +I++SAND A+ E + + +KFV MN+ +K LG+ +HF Sbjct: 103 QLFMEEGEMRSVDELLNAIIIESANDACAAMGEFVGGSIEKFVLMMNDRAKELGMKNSHF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEI-----KGKKYPN 202 +N++G+ HY++A D+A+++ + +Y F+I K ++I K + N Sbjct: 163 VNSNGLPADDHYSSAYDIALMTKEV----CKYPDIFKISSTWQKTIKIGKKNDKERTLSN 218 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + DG+KTG+T +G I A+ +GD LIAVIL A D TR + LL+ Sbjct: 219 TNKLLRMNDKVDGLKTGYTADAGHCISATGKEGDLRLIAVILHAPDSKTRFAEANKLLNY 278 Query: 263 GF 264 GF Sbjct: 279 GF 280 >gi|295706485|ref|YP_003599560.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319] gi|294804144|gb|ADF41210.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319] Length = 388 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 139/274 (50%), Gaps = 15/274 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E + PAS+TK+MT ++ L + K L + S+ A+ S Sbjct: 41 LIERDTGKILYEKNSNQELPPASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + + S ND ++A+AE L +E+KFV MN +K LGL+ T F Sbjct: 101 QIFLEPGEEMTVNDLLKGIAIGSGNDASMAMAEHLAGSEEKFVAKMNQKAKELGLTHTKF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKY--PNTN 204 N G+ HY+TA DMA++ +I +Y Y + KK+ NTN Sbjct: 161 QNPTGLPVENHYSTAHDMAMMGRELLKYEKIINYTSKYEAYLRTD----TDKKFWLVNTN 216 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT + + + A+A +G+ ++AV+ GA RN +L F Sbjct: 217 RLVKFYPGVDGLKTGFTGQAKYCLTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLDYAF 276 Query: 265 YNKTDR---KKINYIIKDFYQQNLSNEVPNISEE 295 T + KK + I K + ++V ++ E Sbjct: 277 SQYTTKPLYKKGDVITKIDVNKGSEDQVTAVTSE 310 >gi|261364923|ref|ZP_05977806.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC 25996] gi|288566708|gb|EFC88268.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC 25996] Length = 417 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ V+A + D PASLTK+MTAY+ F L+ +T+S + Sbjct: 66 YIVTDLHSHQVLASSNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149 S ++ + +K +IV+S ND A +AE++ + FVQ MN +K LG++ Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N + Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG T ++G+N+ AS+ + + ++++++G R S LL Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLL 296 >gi|168215435|ref|ZP_02641060.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] gi|182382426|gb|EDT79905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] Length = 402 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN +K LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|262278278|ref|ZP_06056063.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202] gi|262258629|gb|EEY77362.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202] Length = 382 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A + PAS+TK+MT+Y++ L K LT + N S + Sbjct: 34 YVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGDLTENEQVRMNESAWC 91 Query: 91 PSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 +S+ T T+ L+ +I++S ND + A+AE + E F MN +K + Sbjct: 92 KGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRI 151 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N Sbjct: 152 GMVNTQFVNSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNA 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T DG+KTG T +G+ + S+ +G L++VI G R + +LL+ GF Sbjct: 212 LLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLVSVIFGTPSMAERADQTRALLAWGFA 271 Query: 266 N 266 N Sbjct: 272 N 272 >gi|309389989|gb|ADO77869.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium praevalens DSM 2228] Length = 378 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 6/275 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++++I + M+ I P + A K L++ TG V+ E D PAS+TK+M Sbjct: 8 YILLITIFMVLTILP-TTFAFDIKPESAFLIEAETGQVLFEKNADRKLPPASMTKIMPLL 66 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + L+E LT +TIS+ A S + + L+ +K + + S ND +VAI Sbjct: 67 ITMEKLEEGSISLTDQVTISRYAESMGGSQIFLAANTQVELEKLIKAVTIASGNDASVAI 126 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E + T F+ MN ++ LG+ +T+F N+ G+ HY+TA D++I++ R Q Sbjct: 127 GEYIAGTYSNFIAMMNERAEELGMDSTNFSNSTGLPTTNHYSTAHDISIMA-RELVKHSQ 185 Query: 184 YMHYFQI--KGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +H+ I + +++ +K NTN + + DG+KTG T +G+ + A+A +GD L Sbjct: 186 VLHWASIWTETIDLPNRKAMLVNTNSLINKYPSMDGLKTGHTQEAGYCLTATAKKGDVRL 245 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 I+V++ R + + LL GF + + RK N Sbjct: 246 ISVVMQGETLTAREEATTRLLDYGFNSFSKRKIAN 280 >gi|168210830|ref|ZP_02636455.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] gi|170711096|gb|EDT23278.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] Length = 402 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN +K LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|18310788|ref|NP_562722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens str. 13] gi|110799537|ref|YP_696490.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|168214381|ref|ZP_02640006.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] gi|18145469|dbj|BAB81512.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens str. 13] gi|110674184|gb|ABG83171.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|170714156|gb|EDT26338.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] Length = 402 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN +K LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|313901752|ref|ZP_07835179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467988|gb|EFR63475.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 405 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 8/247 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 L+D TG + D P PASL K+MT +VF L++ + L + +S+ A Sbjct: 52 LVDATTGQELFAQKADEPIPPASLAKIMTLDLVFHALEQGQITLDQEVPVSEAAWRLSVQ 111 Query: 91 -----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 PS + G + +++ ++ + + S ND + +AE++ +E+ FVQ MN + L Sbjct: 112 AGLGGPSAMFLEVGERVRIEDLIRGVAIASGNDASTVLAEAVAGSEEAFVQRMNQHAAEL 171 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTN 204 G+ + F N+HG+ + TARDMA L+ + + P + Y +K E K PN N Sbjct: 172 GMKDSVFSNSHGLPGGEQHVTARDMARLALHVLKEHPGILKYTSMKYFEWKDFAAQPNYN 231 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG +G+++VA+A +GD+ L++V++GA R S LL GF Sbjct: 232 RLLFRDPRVDGLKTGHLSEAGYHLVATAREGDRRLVSVVMGAASDALRVGESQRLLDYGF 291 Query: 265 YNKTDRK 271 T+ + Sbjct: 292 QQFTNTR 298 >gi|328676052|gb|AEB28727.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida 3523] Length = 444 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + ++ TG +++E D PASLTK+MT+Y+V S +K T I IS+NA+ Sbjct: 55 PAWVAMNYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTTEAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------EIKGK 198 THF N G+ YTTA DMA+L+ +FP+ + KGL I + Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADR 234 Query: 199 K--YPNTNWAVG----------------------------------------TFLGADGM 216 K P + A G TF GADGM Sbjct: 235 KQCLPKFDRATGNVIESYTTKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ SA LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLL 338 >gi|126726756|ref|ZP_01742596.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2150] gi|126704085|gb|EBA03178.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2150] Length = 374 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 18/258 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ D P PAS++KLMT ++F L + + L+ +S+ A + S Sbjct: 20 VIDVSSGTVLLSKDADIPLPPASMSKLMTLNMLFEALVDGRVSLSDTWRVSQRAQDMGGS 79 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K T + ++ +IV+S ND V +AE L E++F Q M +++LG++ + F Sbjct: 80 SMYLDKRDRPTTEELIQGIIVQSGNDACVVVAEGLAGGEEEFAQLMTERARSLGMNNSTF 139 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGT 209 NA G + D+ L+ R+ T+FPQ+ YF K G+ + N N + Sbjct: 140 GNASGWPHPLQKMSTHDLGTLAVRLITEFPQFYPYFSQKSFAFDGRVPDNHRNRNPLLAL 199 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +GADG+KTG T +G+ +V SA+QG + ++ V+ G LD SASL ++ Sbjct: 200 GIGADGLKTGHTNEAGYGLVGSAVQGKRRVVFVVSG-LD-------SASL------RASE 245 Query: 270 RKKI-NYIIKDFYQQNLS 286 ++I N+ ++ F Q+ ++ Sbjct: 246 SERITNWALRQFIQKTIA 263 >gi|168186263|ref|ZP_02620898.1| penicillin-binding protein DacF [Clostridium botulinum C str. Eklund] gi|169295681|gb|EDS77814.1| penicillin-binding protein DacF [Clostridium botulinum C str. Eklund] Length = 392 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E + PAS+TK+MT + + K L+ + +S+NA + + Sbjct: 43 LIEPTTGKVIFEKNVHEKFAPASVTKIMTMLLTMEAVDSGKIKLSDTVVVSENAKKMGGN 102 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G T+++ LK + + S ND A A+AE + +E FV+ MN ++ LG+ Sbjct: 103 GSSSMLLDTGEVRTVEDLLKGVAIASGNDAATALAEYIGGSESSFVEMMNKRAQELGMKD 162 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYP---- 201 T F N HG+ GH T+A D++I+S + ++ + G ++ G+K P Sbjct: 163 TTFKNCHGLSADGHLTSAYDISIMSR----ELLKHKKILKYSGTYMETISEGRKQPIELV 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V + G DG+KTGFT + + I A+A++ + ++A+I+GA RN+ ++ L++ Sbjct: 219 NHNKLVRFYKGCDGLKTGFTNEAKYCISATAVKNNIRMLAIIVGAPTYKIRNRDASMLMN 278 Query: 262 MGFYNKTDRKKI 273 GF +K + KK+ Sbjct: 279 YGF-SKFESKKV 289 >gi|308066921|ref|YP_003868526.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus polymyxa E681] gi|305856200|gb|ADM67988.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus polymyxa E681] Length = 462 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+++NAS+ S Sbjct: 75 LIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKSIGS 134 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + TE+ FV+ MN T++ +G+ T+F Sbjct: 135 RIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKNTYF 194 Query: 153 MNAHGV------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KK 199 +N+ G+ TARD A L+ I D P Y + I+ + + K Sbjct: 195 INSTGLDRSDMPKGFQPDTDRETVMTARDAATLASYIIKDHPDYTRFTTIQSYKFRPTDK 254 Query: 200 YP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 P N NW + + G DGMKTG T +G +A + LI+V++GA Sbjct: 255 APLININWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVVMGA 314 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R +A +L+ GF N Sbjct: 315 DSDAHRFTETAKVLNYGFDN 334 >gi|316934064|ref|YP_004109046.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315601778|gb|ADU44313.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 413 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P LLD +G V+ E D P+S+ KLMT VVF LK L +S+N+ Sbjct: 54 PTAILLDAESGSVLFEKNADELRAPSSMMKLMTVEVVFHLLKTGALQLAQEYRVSENSWR 113 Query: 89 Y---PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 Y P ST + S++++DN L+ I++S ND + +AE + +E FV+ M ++ Sbjct: 114 YGGAPAGGSTMFAEIHSSISVDNLLRGAIIQSGNDSCMVLAEGIAGSEAAFVERMTKRAR 173 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL+ + F N+ G+ + + R++A L+ I +P F K + N Sbjct: 174 ELGLTQSTFGNSTGLPNPDNKMSVRELARLARHIILTYPDMYALFGEKEFTWNKIRQTNR 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG KTGFT G+ +V SA+Q LI V+ G + R + LL G Sbjct: 234 NPLLNALPGADGFKTGFTKEGGYGLVGSAVQNGMRLIVVVNGLESADDRASEAKKLLEWG 293 Query: 264 FYNKTDR 270 F N R Sbjct: 294 FRNFESR 300 >gi|317128503|ref|YP_004094785.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus DSM 2522] gi|315473451|gb|ADU30054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus DSM 2522] Length = 387 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E PAS+TK+MT ++ + K + S+ A+ S Sbjct: 39 LIERDTGQVLYEKNSGEKLPPASMTKVMTMLLIMEAIDSGKITWDEKVRTSERAASMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ +K + + S ND +VA+AE L +E++FVQ MN+ +K LGL THF Sbjct: 99 QIFLEPGEEMTVEEMMKGIAIASGNDASVAMAEHLAGSEEQFVQMMNDKAKKLGLKNTHF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 +N++G+ HY++A D+A+++ + + +Y ++ + ++ NTN V Sbjct: 159 VNSNGLPAENHYSSAEDLALMAKALLKYEEITKYTSLYEDYLRQDTDDEFWLVNTNKLVK 218 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + ASA + +IAV++GA RN+ +L + Sbjct: 219 FYPGVDGLKTGFTNEAKYCLTASANKNGMRIIAVVMGAPTPKDRNRQVTEMLDYAY 274 >gi|188585838|ref|YP_001917383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350525|gb|ACB84795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 408 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG I EN + W PASLTK+MT + L E + L +S A++ S Sbjct: 40 LIEAETGRTIYENNAEKSWPPASLTKVMTLVIGLEALNEGELELEETTRVSAKANQTGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ +T+++ L + V SAND VA+AE + + FV MN ++ +GL T+F Sbjct: 100 QMFLRENQEVTIEDLLTGIAVVSANDGCVALAEHMEGSVNNFVNRMNEKAEEIGLENTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWAVG-- 208 + HG+ G Y ARD+A LS + P+ + I G + I+ +Y N N + Sbjct: 160 KDPHGLASDGQYMNARDVARLSQYAVNETPKILELESITGFQFNIESTQY-NRNLMLPDH 218 Query: 209 ------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 ++ G DG+KTG +G+N V +A + D LIAV+LGA ++ R ++ L Sbjct: 219 PQTTRYSYEGTDGLKTGQIEEAGYNFVGTAQRDDMRLIAVVLGAEEQTERFNITRQLFDH 278 Query: 263 GF 264 GF Sbjct: 279 GF 280 >gi|302389707|ref|YP_003825528.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302200335|gb|ADL07905.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 377 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 131/238 (55%), Gaps = 13/238 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +G ++ E + AS TK+MTA V +K L + +T+S+ A+ Sbjct: 39 YVLMDPVSGRILVEKNSEIRLPMASTTKIMTAIVAL-----EKGDLNSTVTVSRKAASVR 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ + G TM+L++ L L++ S ND AVAIAE + K FV+ MN ++ +G T Sbjct: 94 GSSFHLEPGETMSLESMLYGLLLPSGNDAAVAIAEHIGGDVKTFVELMNLKAREIGAFNT 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWA 206 HF N HG+ + GH+TTA+D+A+++ R + P++ + K + I + P NTN Sbjct: 154 HFKNPHGLDEPGHFTTAKDLALIT-RYALNIPKFREIVRTKDIIITEGRRPRHIYNTNRL 212 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG+T +G +VA+A + LI+V+L A D + + LL+ GF Sbjct: 213 LRVSEEIDGVKTGYTGKAGRCLVATAERNGMRLISVVLDAHDHFSN---TLKLLNYGF 267 >gi|229543944|ref|ZP_04433003.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1] gi|229325083|gb|EEN90759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1] Length = 387 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ PAS+TK+MT ++ L + + + + S+ A+ S Sbjct: 40 LIEQATGEVLYSKNSHEELPPASMTKIMTMLLIMEALDKGEIKMDEKVRTSEYAASMGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT++ LK + + SAND AVA+AE + +E+ FV MN +K LGL THF Sbjct: 100 QIFLEPGEEMTVEQMLKGIAIGSANDAAVAMAERIGGSEEAFVDKMNERAKALGLKNTHF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIK-----TDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ GHY++A DMAI++ ++ T F +Y Y + E KK+ NTN Sbjct: 160 ENVTGLPVKGHYSSAYDMAIMAKQLLKHHGITHFTGKYEDYLR----EGSDKKFWLVNTN 215 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT + F + A+A + +IAV+ GA RN + +L F Sbjct: 216 KLVRHYPGVDGLKTGFTNEAKFCLTATAKKNGMRVIAVVFGAPSTKVRNAQVSKMLDYAF 275 Query: 265 YNKT 268 T Sbjct: 276 SQYT 279 >gi|126642471|ref|YP_001085455.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii ATCC 17978] Length = 346 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 7/238 (2%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++A + PAS+TK+MT+Y++ L K LT + N S + + Sbjct: 1 MDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLL--KGELTENEQVRMNESAWCKGS 58 Query: 94 ST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ T T+ L+ +I++S ND + A+AE + E F MN +K +G++ Sbjct: 59 SSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMT 118 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 T F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N + Sbjct: 119 NTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLY 178 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF N Sbjct: 179 TDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFAN 236 >gi|297616714|ref|YP_003701873.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297144551|gb|ADI01308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 381 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 3/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G V+ PAS+TKLMT + L + K L + S+NA + Sbjct: 37 YVLMDADSGKVLLAKNEHKRLPPASMTKLMTLILAMEDLYKGKVDLKEKVVASENAWKLG 96 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G MT ++ + + V SAND VA+AE L + ++FV+ MN +K L L T Sbjct: 97 GSQIYLEPGEEMTFEDMVIAIAVGSANDACVAVAEHLDGSHEEFVKRMNAKAKELRLKDT 156 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 HF+NA+G+ HY++A D+A+++ R +P+ + + IK ++ ++ NTN + Sbjct: 157 HFVNAYGLPDPDHYSSAYDLALMA-RYALCYPKLLEFTSIKEYNLRQGEFKLYNTNKLLW 215 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG KTG+T + F +V++A + LI V++ + + + S L + GF Sbjct: 216 HYPGTDGFKTGWTNEAKFCLVSTAKRNGLRLICVVMASPQKGGNFRDSMKLFNYGF 271 >gi|332654526|ref|ZP_08420269.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332516490|gb|EGJ46096.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 383 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 2/238 (0%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG ++ E PAS+TK+MT ++ L + +T+S A+ Sbjct: 34 PSAVLVEKETGTILYEKEAKRQMEPASVTKVMTLLLIMEALDSGRISREDVVTVSARAAG 93 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K+G MT+ +K + V S ND VA+AE L +E FVQ MN ++ LG+ Sbjct: 94 MGGSQVYLKEGEQMTVGELIKCITVVSGNDATVAMAEYLAGSESAFVQQMNQRAQKLGME 153 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWA 206 T+F+N G+ GH TTA D+A++S + + P Y I I+ + NTN Sbjct: 154 DTNFVNCTGLPASGHVTTAYDIALMSRELILNHPGIREYTTIWMDSIRDGAFGLTNTNRL 213 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + GA G+KTG T ++ + + A+A + LIAV++ A R + + ++L GF Sbjct: 214 VRFYEGATGLKTGSTDSALYCMSATAERDGMELIAVVMAAPTAADRFEDAKAMLDYGF 271 >gi|283795540|ref|ZP_06344693.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291077207|gb|EFE14571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 404 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D NPAS+TK+MT + F LK K LT + S +A Sbjct: 49 PCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ Sbjct: 109 MGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGME 168 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 +F + G+ H +ARD+A+++ + T +P+ +Y I +G + G Sbjct: 169 QANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFG 228 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIAVIL A D R + Sbjct: 229 LSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAV 288 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 289 TLLNYGYAN 297 >gi|171704678|gb|ACB54658.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa] Length = 417 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+++NAS+ S Sbjct: 46 LIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKSIGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + TE+ FV+ MN T++ +G+ T+F Sbjct: 106 RIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQKMGMKNTYF 165 Query: 153 MNAHGVVQHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KK 199 +N+ G+ + T TARD A L+ I D P Y + I+ + + K Sbjct: 166 INSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRPTDK 225 Query: 200 YP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 P N NW + + G DGMKTG T +G +A + LI+V++GA Sbjct: 226 APIINYNWMLEENKNITNFRKFAYPGLDGMKTGHTNNAGNCFTGTAERNGMRLISVVMGA 285 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R +A +L+ GF N Sbjct: 286 DSDAHRFTETAKVLNYGFDN 305 >gi|254522509|ref|ZP_05134564.1| beta-lactamase [Stenotrophomonas sp. SKA14] gi|219720100|gb|EED38625.1| beta-lactamase [Stenotrophomonas sp. SKA14] Length = 260 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 11/255 (4%) Query: 20 LSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 +S+ + P ++ LD T VI ++ + PASLTKLMTAY ++ ++E+ Sbjct: 1 MSLPVPERAPLSSITLDAATFAVIHQHNAETARQPASLTKLMTAYAAYACVEERGRAWDE 60 Query: 79 PITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 +TI+ N + T G T+TL L+ L++ S ND A+AIA L ++ F+ Sbjct: 61 AVTIASNDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQTAFL 120 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN ++ LGL +T F + G+ H ++ARDMA+L+ + D PQ + + + Sbjct: 121 DRMNRHARQLGLRSTWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAF-V 179 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA---IQGDQS---LIAVILGALDR 249 G+ N A+ G DG+KTG+T A+GF + A+A + G LI V+LG+ R Sbjct: 180 HGRFSRNNQNALLGEHGVDGLKTGYTRAAGFCLAATACRTVPGRAQPVRLITVVLGSESR 239 Query: 250 NTRNKVSASLLSMGF 264 + R+ + LS GF Sbjct: 240 DARDALVRDQLSAGF 254 >gi|228990988|ref|ZP_04150951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228997075|ref|ZP_04156706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock3-17] gi|229004731|ref|ZP_04162467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock1-4] gi|228756524|gb|EEM05833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock1-4] gi|228762700|gb|EEM11616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock3-17] gi|228768768|gb|EEM17368.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 343 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 136/244 (55%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G V+ +N + PAS++K+MTAY++ + + K + IS +++ + Sbjct: 96 IIDASNGQVMYKNNEEELLAPASMSKMMTAYILLENIHKGKVHWEDQVKISAKSAQAEGA 155 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + G +T+ + L+++SAN+ AVA+AE + KTE+ F MN T+K L LS AT Sbjct: 156 RIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHIAKTEQDFAHLMNQTAKQLELSEATK 215 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWA 206 F+NA G+ + G T T D+A L++ + TD+P+ + ++ L K +TN Sbjct: 216 FVNASGLQEPDGSETKMTVADVAKLAYHLVTDYPEILDVTHLRQSQLAFKSTMVTSTNEM 275 Query: 207 V-----GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G +L G DG+KTGFT ++G+ +A QGD+ L+ V++G + R + L+ Sbjct: 276 LNPANQGLYLEGMDGLKTGFTDSAGYCFTGTAKQGDKRLVTVVMGTKSQMKRFTETHKLM 335 Query: 261 SMGF 264 S GF Sbjct: 336 SYGF 339 >gi|251794126|ref|YP_003008857.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] gi|247541752|gb|ACS98770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] Length = 428 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 18/257 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ E D P PAS+TK+MT Y+V +K K IT+S+ A+ P Sbjct: 53 LIDADTGQVVYEVNADEPRPPASMTKMMTEYIVLEQIKSKALNWDEMITVSEEAANTPKD 112 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +G + + + V SAND +A+A ++ +E+ FV+ MN T++ LGL++ Sbjct: 113 GSQVYLAQGEQYKVKDLYMAMAVGSANDATIALASAIGGSEQGFVEKMNETAQKLGLTSA 172 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKYPNTNWAV 207 H+ +A G+ +A+D A L+ I + P+++ Y + + K N NW + Sbjct: 173 HYTSATGLADT-TVISAKDQAKLAQIIIKNDPEFLEYASTTEYKFRPRDDKPIVNINWML 231 Query: 208 G-----TFL------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 T+L G DGMKTG+ A+G+ + +GDQ I+V++ + R + Sbjct: 232 ASNKSNTYLKAFAYDGVDGMKTGYISAAGYTFTGTVKRGDQRYISVVMNTKSKEARFNET 291 Query: 257 ASLLSMGFYNKTDRKKI 273 A L + F N ++K + Sbjct: 292 AKLYNYAF-NSLEKKTV 307 >gi|295116100|emb|CBL36947.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SM4/1] Length = 404 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D NPAS+TK+MT + F LK K LT + S +A Sbjct: 49 PCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ Sbjct: 109 MGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGME 168 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 +F + G+ H +ARD+A+++ + T +P+ +Y I +G + G Sbjct: 169 QANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFG 228 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIAVIL A D R + Sbjct: 229 LSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAV 288 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 289 TLLNYGYAN 297 >gi|169343702|ref|ZP_02864701.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] gi|169298262|gb|EDS80352.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] Length = 402 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN ++ LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|295091220|emb|CBK77327.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 404 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D NPAS+TK+MT + F LK K LT + S +A Sbjct: 49 PCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ Sbjct: 109 MGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGME 168 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 +F + G+ H +ARD+A+++ + T +P+ +Y I +G + G Sbjct: 169 QANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKEFG 228 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIAVIL A D R + Sbjct: 229 LSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAV 288 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 289 TLLNYGYAN 297 >gi|319651421|ref|ZP_08005550.1| DacF protein [Bacillus sp. 2_A_57_CT2] gi|317396952|gb|EFV77661.1| DacF protein [Bacillus sp. 2_A_57_CT2] Length = 387 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E PAS+TK+MT ++ + E K I S+ A+ S Sbjct: 40 LIERDTGSILYEKNSGEQLPPASMTKVMTMLLIMEAIDEGKLSWDEKIRTSEYAASMGGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT L+ + + S ND +VA+AE + +E+ FV+ MNN +K LGL T+F Sbjct: 100 QIFLEPGEEMTTKQMLQGIAIGSGNDASVAMAERIAGSEEAFVEMMNNKAKELGLKNTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAI-----LSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTN 204 N G+ HY+TA DMAI L + TDF Y Y + E KK+ NTN Sbjct: 160 QNPTGLSAKEHYSTAHDMAIMAKELLKYEKITDFTGTYEAYLR----EDTDKKFWLVNTN 215 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT + + + A+A + +IAV+ GA RN +L F Sbjct: 216 RLVRFYPGVDGLKTGFTSEAKYCLTATAEKDGMRVIAVVFGAPTSKERNAQVTKMLDYAF 275 >gi|168206139|ref|ZP_02632144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] gi|170662449|gb|EDT15132.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] Length = 402 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN ++ LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|255655303|ref|ZP_05400712.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-23m63] gi|296451287|ref|ZP_06893027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296880361|ref|ZP_06904324.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296259893|gb|EFH06748.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296428602|gb|EFH14486.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 387 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ E PAS+TK+MT ++ L L + +S+ AS S Sbjct: 43 LMDVGSGQILYEKDAHKKLPPASVTKVMTMLLIVEALDSGDIKLDDEVQVSETASSMGGS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T +D LK + V SAND VA+AE L + + FV MN +K L ++ THF Sbjct: 103 QIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK-----YPNTNW 205 N +G+ HYT+A D+A++S + +Y+ + K + GKK NTN Sbjct: 163 ANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDK--VVVGKKQVTVGLANTNK 220 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + GA G+KTGFT + + + ASA +G+ L+A LGA R ++SLL+ GF Sbjct: 221 LIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFA 280 Query: 266 N 266 N Sbjct: 281 N 281 >gi|182625695|ref|ZP_02953464.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] gi|177909097|gb|EDT71572.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] Length = 402 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN ++ LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|217976731|ref|YP_002360878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502107|gb|ACK49516.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 407 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 129/271 (47%), Gaps = 9/271 (3%) Query: 3 QFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L ++ +A+L+ + P + A +P+ L+D TG V+ E D P PAS K Sbjct: 9 HILRLMGLAILAGVCFGSGPASAQAIQTSVPHAILIDVETGSVLFEKDADAPVTPASTVK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKG--STMTLDNALKLLIV 113 +MTA VVF L + + L TIS++A P S+ S + +++ ++ L++ Sbjct: 69 VMTADVVFGELAQGRIKLDDEFTISEHAWRTGGAPARASSMFAALNSRVRVEDLIRGLVI 128 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND A+A+AE + +E F M LGL+ + F N G T R+M IL Sbjct: 129 DSGNDAAIALAEGVAGSETAFAGLMMKRGHELGLTRSVFTNPWGKDDPEQKVTPREMTIL 188 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + +P Y YF K + N N + +GADG+KTG ASGF +V SA+ Sbjct: 189 AAHVIATYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDIGADGLKTGNIDASGFGLVGSAV 248 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 Q Q LI + GA R + + L F Sbjct: 249 QNGQRLILALYGATTAKERAEEARKLFLWAF 279 >gi|298291753|ref|YP_003693692.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296928264|gb|ADH89073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 414 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D +G V+ E D P S+ KLM+ V+F + E + T +S+ A Sbjct: 49 PQAILMDFESGTVLFEKAADTQSAPGSIAKLMSLAVIFREITEGRLSPDTEFKVSEYAWR 108 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +T S++ + + L+ I+ S ND + +AE + E F MN +K Sbjct: 109 RGGAPSGGATMFAALNSSIKVSDLLRGAIIPSGNDATIILAEGISGNELGFSVKMNEEAK 168 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL+ + F N++G+ TTARDMA ++ I D+P F + N Sbjct: 169 RLGLTGSSFHNSNGLSDPDQKTTARDMAKIATHIIRDYPDLYKIFSEPDFLWSKIRQSNR 228 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G LGADG TG+ GFN+V SA+Q +Q LI VILG R + + LL G Sbjct: 229 NPLLGMSLGADGFMTGYLKEGGFNLVGSAVQNNQRLIVVILGGKSEKERAEDARKLLEWG 288 Query: 264 FYNKTDR 270 F + R Sbjct: 289 FRSFESR 295 >gi|223986124|ref|ZP_03636147.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM 12042] gi|223961929|gb|EEF66418.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM 12042] Length = 383 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 121/238 (50%), Gaps = 6/238 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E PAS+TK+M+ +V + K T +T S +AS S Sbjct: 37 LIDYETGQILYEKNSSAKLYPASMTKMMSLLLVVEAIHNGKLSWDTEVTASAHASSMGGS 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ K V SAND VA+AE + +E+ F MN ++ LGL THF Sbjct: 97 QIFLETGEVMTVEDLYKASTVASANDAIVALAEKVGGSEENFAAMMNEKAEQLGLEQTHF 156 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI----KTDFPQYMHYFQ--IKGLEIKGKKYPNTNWA 206 +NA G+ HY+ A+DMA + + + D ++ + I+ NTN Sbjct: 157 VNATGLHDDNHYSCAKDMAAIGRALIQEGQDDILRFTSTYDDYIRADTENKFWLVNTNKL 216 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + T+ G DG+KTG+T S + I +A + LI V +G R+ RN +++LL GF Sbjct: 217 IRTYQGMDGLKTGYTTQSMYCITVTAKRDGLRLIGVAMGEPTRDVRNSEASALLDYGF 274 >gi|51893513|ref|YP_076204.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51857202|dbj|BAD41360.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 424 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 121/243 (49%), Gaps = 18/243 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PD AS TK+MTA + + L +TI A S Sbjct: 47 LMDCATGQVLWEKNPDERLAIASTTKIMTALLAI-----ESGRLDETVTIPPEAELIEGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G+T TL L+ LI++SAND AVAIA L +E+ FV+ MN ++ LGL+ T F Sbjct: 102 KVYLTQGTTYTLRELLEALILESANDAAVAIAIFLGGSEEAFVRQMNEKARALGLTDTQF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NT 203 N HG+ + GHY++ARD+A L R+ P Y +I G E +P N Sbjct: 162 RNPHGLDEDGHYSSARDLARLG-RVAMADPVYR---EIAGTEWLTFPWPEMETTREIYNR 217 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + A G+K G+T A+ F +V SA + +I V+LG D+ LL G Sbjct: 218 NLLIQRMPEATGVKNGYTEAALFTLVGSAAADGREVIGVLLGNPDKEQMYADMERLLRHG 277 Query: 264 FYN 266 Y+ Sbjct: 278 LYD 280 >gi|311068945|ref|YP_003973868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310869462|gb|ADP32937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 389 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ PAS+TK+MT ++ L + K ++ + S+ A+ S Sbjct: 42 LIERDTGKVLYNKNSHERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEYAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E++FVQ MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDSSVAMAEYISGSEEEFVQKMNKKAKELGLKDTTF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKY--PNTN 204 N G+ + GHY++A DMA++S +I Y Y + E KK+ NTN Sbjct: 162 KNPTGLPEKGHYSSAYDMAMMSKELLKYDKITAFTGTYEDYLR----EDTDKKFWLVNTN 217 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L F Sbjct: 218 RLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDYAF 277 >gi|90424200|ref|YP_532570.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90106214|gb|ABD88251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 418 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 5/251 (1%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ +TG V+ E D P+S+ KLMT +VF L++ LT +S+NA Sbjct: 59 PTAILVEASTGSVLYEKNADELRAPSSMMKLMTVELVFRALQQGDIKLTDQYQVSENAWR 118 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P NST + S + +++ L+ IV+S ND + AE+L E+ F + + ++ Sbjct: 119 KGGAPAGNSTMFAEIHSRIAVEDLLRGAIVQSGNDACMVFAEALGGGERGFAELLTKRAR 178 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL+ + F N++G+ G+ + R++A L+ + +P++ F + + N Sbjct: 179 ELGLAKSTFANSNGLPDPGNKMSVRELARLARHLIQTYPEFYKIFGEREFTWNKIRQTNR 238 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG+KTG+T G+ +V SA+Q LI VI G D + R + LL G Sbjct: 239 NPLLTMLDGADGLKTGYTKEGGYGMVGSAVQNGMRLIVVINGVEDIDDRASEAKKLLEWG 298 Query: 264 FYNKTDRKKIN 274 F N R N Sbjct: 299 FRNFESRALFN 309 >gi|58698116|ref|ZP_00373039.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535362|gb|EAL59438.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila ananassae] Length = 310 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F +LK + +S+ A E S+ K+G +T+ L+ + + S ND Sbjct: 1 MTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDA 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 + +AE + +E+ FV MN ++NL L+ +HF+N+ G H+ +A+D+ +L+ RI T Sbjct: 61 CITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFT 120 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP+Y F + L N N + +G DG+KTG+T A G+ IVASA + D+ + Sbjct: 121 DFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRI 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 AV+ G R + + L+ N + KKI F Q ++ EV Sbjct: 181 FAVVNGLNTEKERIEEAKRLIQYSL-NHFNTKKI------FAQDSVVEEV 223 >gi|110802732|ref|YP_699090.1| penicillin-binding protein dacf precursor [Clostridium perfringens SM101] gi|110683233|gb|ABG86603.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101] Length = 402 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I E + + PAS+TK+MT + + + L+ IT+S+ A + S Sbjct: 41 LMEASTGKIIYEKNANEKFAPASVTKVMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ +K + + S ND AVA+AE L +E FV+ MN ++ LG+ T F Sbjct: 101 TMLLDVGEVRTVEEIIKGIGIASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH +TA D++I+S + P + Y I +G+K P N N V Sbjct: 161 KNCTGLPIEGHLSTAYDISIMSREL-LKHPTILKYTGTYMETISEGRKSPIELVNHNKLV 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG+KTGFT + + I A+A + +++VI+GA RN+ ++ L++ GF Sbjct: 220 RFFKGCDGLKTGFTNDAKYCISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGF 276 >gi|241661811|ref|YP_002980171.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D] gi|240863838|gb|ACS61499.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D] Length = 400 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +G V+ D PASLTKLMTAY+VF +++ K IT ++ Sbjct: 47 WMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETVRTVK 106 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G ++ + LI++S ND A+ +AE++ TE FV MN ++ LG+ Sbjct: 107 TDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREAERLGMK 166 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF NA G+ HY+TARD++IL+ + DFPQ ++ K K N N + Sbjct: 167 NTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEFTYNNIKQSNRNRLLW 226 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQG-DQSLIAVILGALDRNTRNKVSASLLS 261 DG KTG T ++G+ +V SA + G ++ L++VI+G R + S +L+ Sbjct: 227 LDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGTKSDAIRTQESLKVLN 286 Query: 262 MGF 264 G+ Sbjct: 287 YGY 289 >gi|332798926|ref|YP_004460425.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] gi|332696661|gb|AEE91118.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] Length = 415 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 26/292 (8%) Query: 1 MRQ-FLVIIAMAMLSNIFPFL-------SIAETNKLPYYT-----LLDTNTGHVIAENYP 47 MRQ + I++A++ +F FL +T LP + L+D +TG V+ E Sbjct: 1 MRQKYTYTISIAVVLFLFSFLIPISFANGAEQTESLPSISGETGILIDASTGKVLYEKNA 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 PAS TK+MTA L +K L+ +T K + + ++G +TL+ Sbjct: 61 YTRMEPASTTKIMTA-----ILALEKGNLSDVVTTGKQPTLADGTRIYLEEGEQLTLEQM 115 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L +++ S ND A+AIAE + + + FV+ MN ++ +G T F+N +G+ GH TTA Sbjct: 116 LYGMMLNSGNDAAIAIAEHIGGSVEAFVEMMNEKAREIGAKDTTFVNPNGLPAKGHLTTA 175 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFT 221 D+A++S + P++ K EI ++ N N + + GADG+KTG+T Sbjct: 176 YDLALISRYALLNLPEFRKIVSTKNAEIPWQAQDSDRQLINLNKLLWNYEGADGVKTGYT 235 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G +VASA + LI+VIL + N + SA+LL GF N +RK I Sbjct: 236 STAGSTLVASATRNGWQLISVILKSDAINVWHD-SAALLDYGFTN-FERKNI 285 >gi|241758793|ref|ZP_04756906.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens SK114] gi|241321001|gb|EER57214.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens SK114] Length = 405 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 27/244 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK----EKKAMLTTPITISKNA 86 Y + D ++ +A N D P PA+LT++MTAY+ F L+ E MLT Sbjct: 58 YIVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLEAGQMLTV-------- 109 Query: 87 SEYPPSNSTFK-KGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 SN+ +K +GS M LD + +K ++SAND A+ +AE+L +FV+ Sbjct: 110 -----SNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSIDEFVK 164 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG+ THF N G+ +GH +T D+AIL+ + D+P+Y F K + Sbjct: 165 QMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYN 224 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + PN N + DG+KTG++ +G+++ AS+ + ++ +++++ GA R S Sbjct: 225 NIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASES 284 Query: 257 ASLL 260 + LL Sbjct: 285 SKLL 288 >gi|187927291|ref|YP_001897778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J] gi|309780010|ref|ZP_07674763.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA] gi|187724181|gb|ACD25346.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J] gi|308921180|gb|EFP66824.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA] Length = 400 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +G V+ D PASLTKLMTAY+VF +++ K IT ++ Sbjct: 47 WMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETVRTVK 106 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G ++ + LI++S ND A+ +AE++ TE FV MN ++ LG+ Sbjct: 107 TDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREAERLGMK 166 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF NA G+ HY+TARD++IL+ + DFPQ ++ K K N N + Sbjct: 167 NTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEFTYNNIKQSNRNRLLW 226 Query: 209 TFLGADGMKTGFTCASGFNIVASA------IQG-DQSLIAVILGALDRNTRNKVSASLLS 261 DG KTG T ++G+ +V SA + G ++ L++VI+G R + S +L+ Sbjct: 227 LDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGTKSDAIRTQESLKVLN 286 Query: 262 MGF 264 G+ Sbjct: 287 YGY 289 >gi|152975284|ref|YP_001374801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024036|gb|ABS21806.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 339 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 136/252 (53%), Gaps = 12/252 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + + PAS++K+MTAY++ + + K + IS +++ + Sbjct: 79 IIDASDGEVIYQNNENETFAPASMSKMMTAYLLLENIHKGKVHWEDQVKISAKSAQTEGA 138 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + +T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K+L LS T Sbjct: 139 KIPLQMNDVVTVKDLFHALMIQSANNAAVALAEHMAKTEKNFVQIMNQKAKDLELSNKTK 198 Query: 152 FMNAHGVVQHGHYTT---ARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWA 206 F NA G+ + T A D+A L++ + ++P+ + ++ L K +TN Sbjct: 199 FANASGLQEPDGSETKMPAADVAKLAYHLIKEYPEILEVTHLRRSQLAFKNISVTSTNEM 258 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + T G DG+KTGFT ++G+ +A QGD+ +I V++G + R + L+ Sbjct: 259 LNTANKNLHIEGMDGLKTGFTDSAGYCFTGTAKQGDKRIITVVMGTKSQTKRFTETHKLM 318 Query: 261 SMGFYNKTDRKK 272 S GF +RK+ Sbjct: 319 SYGFEFVNERKE 330 >gi|51893725|ref|YP_076416.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51857414|dbj|BAD41572.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 374 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 28/262 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90 LLD TG V+ E PD P PASLTKLMT ++ F ++ + P+ +S+N A+ +P Sbjct: 2 LLDFATGQVLYEKNPDEPIAPASLTKLMTLHLAFKRIEAGQMSYDDPVVVSRNAWAANFP 61 Query: 91 PSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ F + G +T+ +K L + S ND AVA+AE + T + FV+ MN+ ++ LG Sbjct: 62 DSSLMFLEPGDKVTVGEVMKGLAIVSGNDAAVALAEHIGGTVENFVKMMNDEAQALGFKT 121 Query: 150 THFMNAHGVVQHGHYTTA--------------RDMAILSWRIKTDFPQYMHYFQIKGLEI 195 F++ HG+ T + +L + + +PQY + + Sbjct: 122 FRFVDPHGLSPQNQVTAGEFARFARLYIQLHPESLEMLHSQKEYSYPQYENLSDARQAVT 181 Query: 196 KGKKYP-----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----A 246 + + N N + T+ G DG+KTGF +GFN+ +A +G L+ V+LG + Sbjct: 182 SPEAHEPITQMNRNGLLWTYEGVDGLKTGFVDEAGFNLAVTAQRGGMRLVGVLLGIQADS 241 Query: 247 LDRNT--RNKVSASLLSMGFYN 266 + + R A+LLS GF N Sbjct: 242 IPEGSAKREAEGAALLSWGFNN 263 >gi|254436605|ref|ZP_05050099.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] gi|198252051|gb|EDY76365.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] Length = 399 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 10/248 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLT--TPITISKNAS 87 +LD +TG V+ E D P PAS++KLMT Y+ F L + +LT + +S++ Sbjct: 36 VLDHSTGIVLLEKNADDPLPPASMSKLMTLYMAFEAVNPLNGQDPILTFDDVLPVSQHCM 95 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNL 145 +Y S + +++ ++ +IV S ND + IAE+L + TE F Q M ++ + Sbjct: 96 DYTGSTMFLDTTDRVRVEDLVRGIIVLSGNDASCVIAEALSRDGTEAGFAQQMTERAQQI 155 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN--- 202 G+ + F N++G G+ T RD+ L+ R+ TD+P Y F + + G+ N Sbjct: 156 GMMNSSFANSNGWPAAGNRVTMRDLGTLADRLITDYPTYYPLFAEREFDYDGEHLANIRN 215 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + +GADG+KTG T +GF +V SA QGD+ +I V+ G R + +++ Sbjct: 216 RNPLLALNIGADGLKTGHTREAGFGLVGSAKQGDRRIIFVVTGIETAQERAAETERIVNW 275 Query: 263 GFYNKTDR 270 F T R Sbjct: 276 AFRQFTQR 283 >gi|284800030|ref|ZP_05985503.2| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava NJ9703] gi|284796183|gb|EFC51530.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava NJ9703] Length = 405 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ +A N D P PA+LT++MTAY+ F L+ + +T+S A + Sbjct: 58 YIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEASQMLTVSNAAWKVE 117 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S +++ + +K ++SAND A+ +AE++ +FV+ MN +K LG+ Sbjct: 118 GSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMNEEAKRLGMKH 177 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N + Sbjct: 178 THFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYR 237 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL Sbjct: 238 DSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLL 288 >gi|225390069|ref|ZP_03759793.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme DSM 15981] gi|225043871|gb|EEG54117.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme DSM 15981] Length = 382 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 129/249 (51%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D +PAS+TK+MT ++F L+ K +T + S A Sbjct: 17 PSALLMEASTGQVIYEKDADQKRSPASITKIMTLILIFDALESGKIKMTDEVVTSAYAKS 76 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +I+ S ND +V +AE + TE++FV+ MN + LG++ Sbjct: 77 MGGSQVFLEEGEKQTVETLIKCIIIASGNDASVTMAEYIGGTEQEFVRMMNERAAGLGMT 136 Query: 149 ATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 THF++ G+ H TTARD+AI+S + +PQ +Y I +G + G Sbjct: 137 NTHFVDCCGLTDSPDHVTTARDIAIMSRELINRYPQIHNYSTIWMENITHVTKQGTKEFG 196 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIAV++ A D R + Sbjct: 197 LSNTNKLLKMATNFTVTGLKTGSTSLAKYCLSATAEKDGVRLIAVVMAAPDFKARFADAQ 256 Query: 258 SLLSMGFYN 266 ++L+ G+ N Sbjct: 257 TMLNYGYAN 265 >gi|239827603|ref|YP_002950227.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239807896|gb|ACS24961.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 393 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E PAS+TK+MT ++ + + + + S+ A+ S Sbjct: 46 LIERDTGTVLYEKNAHKKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+D L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F Sbjct: 106 QIFLEPGEEMTVDELLRGIAIGSGNDASVAMAERIAGSEEAFVEMMNKKAKELGLKNTSF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N+ G+ GHY++A DMA+++ + D +Y ++ E KK+ NTN V Sbjct: 166 QNSTGLPAEGHYSSAYDMAMMARELLKYEDITKYTGIYEDYLRENTDKKFWLVNTNRLVK 225 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A + +IAV+ GA RN +L F Sbjct: 226 FYPGVDGLKTGFTNEAKYCLTATAKKNGMRVIAVVFGASTPKDRNAQITKMLDYAF 281 >gi|303238725|ref|ZP_07325258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302593844|gb|EFL63559.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 399 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 6/234 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ E + AS TK+MTA V +K L + +SK A+ S Sbjct: 59 VIDMKSGRVLYEKNAYSTRSIASTTKIMTAIVAI-----EKGKLDNKVKVSKRAASVRGS 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+G ++L L L++ S ND A+AIAE + + ++F Q MN+ ++ LGL T F Sbjct: 114 VIHLKEGEELSLRELLYGLMLNSGNDAAIAIAEHIGGSVEEFAQMMNDKARELGLKNTQF 173 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 HG+ GHY+TA ++A ++ R + + I G+ TN +G + G Sbjct: 174 KTPHGLDTPGHYSTAYELAQIA-RYALGNSTFSQIVGTQSTSITGRSLYTTNEMLGAYPG 232 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G +VASA + + +I+V+L R+ R + S ++L F N Sbjct: 233 ADGVKTGYTGQAGRCLVASATRNNMRIISVVLNCHSRSVRAQSSKAILDYAFNN 286 >gi|192291489|ref|YP_001992094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192285238|gb|ACF01619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 413 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D +G V+ E D P+S+ KLMT VF LK LT +S+NA Sbjct: 54 PSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWR 113 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST + S +++DN L I++S ND + +AE + +E FV+ M ++ Sbjct: 114 NGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRAR 173 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F N+ G+ + + R++A L+ I +P+Y F K + N Sbjct: 174 AIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNR 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG KTG+T G+ +V SA+Q LI V+ G D + R + LL G Sbjct: 234 NPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEWG 293 Query: 264 FYNKTDR 270 F N R Sbjct: 294 FRNFESR 300 >gi|39935841|ref|NP_948117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39649695|emb|CAE28216.1| penicillin binding protein [Rhodopseudomonas palustris CGA009] Length = 413 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D +G V+ E D P+S+ KLMT VF LK LT +S+NA Sbjct: 54 PSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWR 113 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST + S +++DN L I++S ND + +AE + +E FV+ M ++ Sbjct: 114 NGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRAR 173 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F N+ G+ + + R++A L+ I +P+Y F K + N Sbjct: 174 AIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNR 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG KTG+T G+ +V SA+Q LI V+ G D + R + LL G Sbjct: 234 NPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEWG 293 Query: 264 FYNKTDR 270 F N R Sbjct: 294 FRNFESR 300 >gi|295103490|emb|CBL01034.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii SL3/3] Length = 410 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 2/234 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E D AS+TK+MT + F + + + T + +S++A S Sbjct: 64 LIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHAYHMGGS 123 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TLD LK + V SAND AVA+AE + +E FVQ MN + LG+ T F Sbjct: 124 QIWLEPGEQFTLDEMLKAICVSSANDAAVAVAELVGGSEPAFVQQMNARAAELGMEHTTF 183 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTF 210 NA G+ GH +TARD+AI+S I T P+ +HY I ++G + NTN + + Sbjct: 184 RNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTNKLLRRY 243 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G+KTG T +G I ASA + +LIAV+LGA R + + +LL GF Sbjct: 244 NGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLLDYGF 297 >gi|258516321|ref|YP_003192543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257780026|gb|ACV63920.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 373 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 13/243 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ + PAS TK++TA L + L +TISK A+ S Sbjct: 38 LMDVGSGQVLYQKNAFQRRPPASTTKILTA-----LLALEGGDLGQVVTISKTAASTGES 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +TL+ + ++KS ND VAIAE + TE FVQ MN +K +G +HF Sbjct: 93 SIYLQAGENLTLEELIYGALLKSGNDSCVAIAEQIAGTEANFVQLMNEKAKQMGAMDSHF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVG 208 +N +G+ GHY+TA D+A L+ + P + + I+G + NTN + Sbjct: 153 VNCNGLPAEGHYSTAYDLAKLTCYALQN-PVFNTVVSTREKVIRGPGWQRHLQNTNQLLD 211 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T+ ADG+KTG T A+G +VASA + ++ L++V+L + +R +K SLL GF N + Sbjct: 212 TYTFADGVKTGTTNAAGPCLVASATRDNRRLVSVVLHSANRYGDSK---SLLEYGFNNFS 268 Query: 269 DRK 271 + K Sbjct: 269 NNK 271 >gi|319638282|ref|ZP_07993045.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102] gi|317400555|gb|EFV81213.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102] Length = 405 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 27/244 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK----EKKAMLTTPITISKNA 86 Y + D ++ +A N D P PA+LT++MTAY+ F L+ E MLT Sbjct: 58 YIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEAGQMLTV-------- 109 Query: 87 SEYPPSNSTFK-KGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 SN+ +K +GS M LD + +K ++SAND A+ +AE++ +FV+ Sbjct: 110 -----SNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVK 164 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG+ THF N G+ +GH +T D+AIL+ + D+P+Y F K + Sbjct: 165 QMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYN 224 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + PN N + DG+KTG++ +G+++ AS+ + ++ +++++ GA R S Sbjct: 225 NIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASES 284 Query: 257 ASLL 260 + LL Sbjct: 285 SKLL 288 >gi|93005488|ref|YP_579925.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter cryohalolentis K5] gi|92393166|gb|ABE74441.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychrobacter cryohalolentis K5] Length = 388 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 15/243 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV-----FSFLKEKKAMLTTPITISKN 85 Y L+D NTG ++A+ + PASLTK+MT+Y++ LKE +L +P + Sbjct: 40 YVLMDYNTGEILAQKNANQALPPASLTKMMTSYIIEQRLASGDLKETDQVLMSPSAWCRG 99 Query: 86 ASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 +S Y P N K S + + L+ +I++S ND + A+AE + +E F MN Sbjct: 100 SSSQSCMYVPVN---KSASVIDM---LRGIIIQSGNDASKAMAEHIAGSEASFAILMNEQ 153 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF+N+ G+ GH +A D+A LS I + Y + K G Sbjct: 154 AQKIGMKNTHFVNSTGMPDEGHQASALDLAKLSRAIIKNSGDYYSIYSEKEFTYNGITQG 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + T DG+KTG T A+G+ + AS+ + LI+VI+G + R S LL+ Sbjct: 214 NRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRLISVIMGTESQQARADQSRELLN 273 Query: 262 MGF 264 GF Sbjct: 274 WGF 276 >gi|260428585|ref|ZP_05782564.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45] gi|260423077|gb|EEX16328.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45] Length = 392 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 5/243 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ D PAS++KLMT Y+ F + + + L + +S++A Y S Sbjct: 36 VLDYTTGTVLMAKNADEAMPPASMSKLMTLYMAFEAIHDGRLTLDERLPVSEHAMSYGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND IAE+L TE F + M ++ LG++ + Sbjct: 96 TMFLNTQDRVRVEDLLRGIIVLSGNDACAVIAEALSPNGTEPGFAELMTRRAQQLGMTNS 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F NA G H + RD+ +L+ RI DFP++ F K G+ N N + Sbjct: 156 TFANASGWPAANHRMSMRDLTLLATRIIEDFPEFYPIFAEKQFAFDGRAPSNVNNRNPLL 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +GADG+KTG T +G+ +V SA QG++ ++ + G R + S S+++ F Sbjct: 216 RLNIGADGLKTGHTAEAGYGLVGSAKQGERRVVFAMTGLDSERARAEESESIVNWAFRQF 275 Query: 268 TDR 270 +R Sbjct: 276 AER 278 >gi|220926670|ref|YP_002501972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219951277|gb|ACL61669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 403 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 127/244 (52%), Gaps = 5/244 (2%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 ++ P+ L+D ++G V+ E D P++PAS+ KLMT V+F +++ + + IS+N Sbjct: 35 SQAPHAILVDADSGSVLYEKAADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISEN 94 Query: 86 A----SEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A +S F + S + L + L+ LIV+S ND A+A AE++ TE F Q MN Sbjct: 95 AWRRGGAGGGGSSMFAQLNSKVKLPDLLRGLIVQSGNDAAIAAAEAIGGTEDNFAQIMNR 154 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL+ + F NA G TARD+A L+ + +P+ F + + Sbjct: 155 RARELGLTRSTFRNATGYSAPDQKVTARDLAKLAIHLIETYPEEYKLFAEREFTWNKIRQ 214 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R + LL Sbjct: 215 QNRNPLLAMDIGADGLKTGYLEESGYGLTGSAVQNGQRLVMVVSGLKTARERAAEARKLL 274 Query: 261 SMGF 264 GF Sbjct: 275 DWGF 278 >gi|86749795|ref|YP_486291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86572823|gb|ABD07380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 419 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L+D +G V+ E D P+S+ KLMT +VF L + + T IS+ A Sbjct: 60 PSAILIDGESGSVLFEKNADELRAPSSMLKLMTVELVFHLLAKGEIKPTDEYKISEYAWR 119 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P NST + S + +++ LK I++S ND +A+AE + +E FV+ M ++ Sbjct: 120 RGGAPAGNSTMFAEIHSKVAVEDLLKGAIIQSGNDSCIALAEGIAGSEPAFVERMTKRAR 179 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F N++G+ G+ + R++ L+ I +P F K + N Sbjct: 180 EIGLTQSTFANSNGLPDPGNKMSVRELGRLARHIIQTYPNDYKLFSEKEFTWNKIRQTNR 239 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + TF GADG+KTG+T G+ +V SA+Q LI V+ G D + R LL G Sbjct: 240 NPLLNTFNGADGLKTGYTKDGGYGMVGSAVQNGMRLIVVVNGIDDIDDRASEVKKLLEWG 299 Query: 264 FYNKTDR 270 F N R Sbjct: 300 FRNFESR 306 >gi|160942970|ref|ZP_02090208.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii M21/2] gi|158445664|gb|EDP22667.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii M21/2] Length = 410 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 2/234 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E D AS+TK+MT + F + + + T + +S++A S Sbjct: 64 LIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHAYHMGGS 123 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TLD LK + V SAND AVA+AE + +E FVQ MN + LG+ T F Sbjct: 124 QIWLEPGEQFTLDEMLKAVCVSSANDAAVAVAELVGGSEPAFVQQMNARAAELGMEHTTF 183 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTF 210 NA G+ GH +TARD+AI+S I T P+ +HY I ++G + NTN + + Sbjct: 184 RNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTNKLLRRY 243 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G+KTG T +G I ASA + +LIAV+LGA R + + +LL GF Sbjct: 244 NGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLLDYGF 297 >gi|169351113|ref|ZP_02868051.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552] gi|169292175|gb|EDS74308.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552] Length = 380 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++ ++ + D PAS TK+MT ++F + KK +T SK A+ S Sbjct: 36 LIDADSKQILYDKNADKKLFPASTTKIMTMIIMFEAINNKKISFDDQVTTSKYAASMGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G M+L++ K + + SAND +VA++E + + KFV+ MN +K L L THF Sbjct: 96 QVYLEEGENMSLEDMFKSIAIASANDASVAVSEYIAGSTNKFVEMMNQKAKELNLKNTHF 155 Query: 153 MNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA 206 N G+ + HYT D+A++ S+ IK + + + I+ NTN Sbjct: 156 ENVTGLHDNNHYTCPYDLAMMASYLIKIGGNKLLSVTSLYDSYIREDTKQSFWLVNTNKL 215 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G DG+KTG+T +G+ +V +A + Q L+ V++ + RN+ +LL G N Sbjct: 216 LKLYDGVDGLKTGYTKEAGYCLVTTAKRDGQRLVGVVMKESEPKKRNEEMCNLLDYGLNN 275 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306 +++I Y ++++ +++ N++ V KE I Y Sbjct: 276 Y--KREIIYKKDSIIEKHVVDKMDNLTINVVC--KEDIAY 311 >gi|71065253|ref|YP_263980.1| penicillin-binding protein 6 [Psychrobacter arcticus 273-4] gi|71038238|gb|AAZ18546.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychrobacter arcticus 273-4] Length = 388 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 15/243 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV-----FSFLKEKKAMLTTPITISKN 85 Y L+D NTG ++A+ + PASLTK+MT+Y++ LKE +L +P + Sbjct: 40 YVLMDYNTGEILAQKNANQALPPASLTKMMTSYIIEQRLASGDLKETDQVLMSPNAWCRG 99 Query: 86 ASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 ++ Y P N K S + + L+ +I++S ND + A+AE + +E F MN Sbjct: 100 SNSQSCMYVPVN---KSASVIDM---LRGIIIQSGNDASKAMAEHIAGSEASFAILMNEQ 153 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF+N+ G+ + GH +A D+A LS I + Y + K G Sbjct: 154 AQKIGMKNTHFVNSTGMPEEGHQASALDLAKLSRAIIKNSGDYYRIYSEKEFTYNGITQG 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + T DG+KTG T A+G+ + AS+ + LI+VI+G + R S LL+ Sbjct: 214 NRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRLISVIMGTESQQARADQSRELLN 273 Query: 262 MGF 264 GF Sbjct: 274 WGF 276 >gi|213019298|ref|ZP_03335105.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995407|gb|EEB56048.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 102/186 (54%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT YV F +LK + +S+ A E S+ K+G +T+ L+ + + S ND Sbjct: 1 MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +A+AE + +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI T Sbjct: 61 CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 120 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP+Y F + L N N + +G DG+KTG T A G+ I+ SA + D+ + Sbjct: 121 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 180 Query: 240 IAVILG 245 AV+ G Sbjct: 181 FAVVNG 186 >gi|296133697|ref|YP_003640944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296032275|gb|ADG83043.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 413 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 13/241 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G V+ PD PAS TK++T + ++ + +T+SKNA Sbjct: 42 VLIDARSGQVLYAKNPDLRLPPASTTKILTVAIAL-----EEGNVNDKVTVSKNAVTQEG 96 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ G T+TL++ L +++ S ND AVA+AE + + FV+ MN +K G + ++ Sbjct: 97 SSIYLTAGETLTLEDLLYGVLLSSGNDAAVAVAEHIAGSVPAFVKLMNKKAKEWGATNSN 156 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------KYPNTNW 205 F N +G+ HYTTARD+A+++ + + P + K EIK + N N Sbjct: 157 FCNPNGLPNDEHYTTARDLAMIA-KHAMELPLFREMAATKVKEIKRADPANFFRLINHNK 215 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + GA+G+KTG+T + +V+SA +GDQ IAV+LG++ N S +LL GF Sbjct: 216 LLWRYEGANGIKTGYTRVAQQCLVSSAKRGDQEFIAVVLGSVGNNIWTD-SMALLDYGFK 274 Query: 266 N 266 N Sbjct: 275 N 275 >gi|213162143|ref|ZP_03347853.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 247 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 114/208 (54%), Gaps = 11/208 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 221 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIV 229 W+ T L DGMKTG T +G+N+V Sbjct: 222 RLLWS--TNLHVDGMKTGTTAGAGYNLV 247 >gi|312144315|ref|YP_003995761.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp. 'sapolanicus'] gi|311904966|gb|ADQ15407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp. 'sapolanicus'] Length = 375 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 5/236 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ D PAS+TK+M + L+E L +TIS+ A+ S Sbjct: 35 LMEAETGQVLFSKNADRKLPPASMTKIMPLLIAMEKLEEGAISLDDKVTISRYAASMGGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + L+ LK + + S ND +VAI E + T F+ MN ++ LG+ T+F Sbjct: 95 QIFLAANTQVELEKLLKAVTIASGNDASVAIGEYIAGTYSNFIAMMNRRAEELGMENTNF 154 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKK--YPNTNWAVG 208 N+ G+ +Y+TARD+AI+S R +P + + I + +++ G++ NTN + Sbjct: 155 SNSTGLPDPDNYSTARDIAIMS-RELAKYPLVLQWGSIWTENIQLPGREAMLVNTNRLIN 213 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +GF + A+A +GD LI+V++ R + LL GF Sbjct: 214 VYPSMDGLKTGHTREAGFCLSATAQKGDTRLISVVMQGDTLEQREDTTIRLLDYGF 269 >gi|326202106|ref|ZP_08191976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] gi|325987901|gb|EGD48727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] Length = 408 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V++E AS+TK+MT ++ + + +++S+ ++ S Sbjct: 63 LMDAASGKVLSEKNSHERLAIASVTKVMTMLLIMEAIDSGRFTFDDKVSVSEYSAGMGGS 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++ LG+ T F Sbjct: 123 QAYMEPGEEFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGMKDTKF 182 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 M+ G+ G Y++A D+A++S + P+ + + + + NTN V + Sbjct: 183 MDCTGLNDDG-YSSAHDVALMSRELVMKHPKVLQFTGKWHDTFRNGTFDLYNTNKLVKFY 241 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+KTGFT +GFN+ A+ + + L++V+LG D NTR S LL GF N Sbjct: 242 ANCDGLKTGFTSKAGFNLSATTRRNNLRLVSVVLGEPDSNTRFAESRKLLDYGFAN 297 >gi|295100396|emb|CBK97941.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii L2-6] Length = 418 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 127/234 (54%), Gaps = 2/234 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ E D AS+TK+MT + F + + + + TP+ +S++A S Sbjct: 73 LIEQGSGRVLYEKNADERVPIASITKVMTLLLAFEAVHDGRLTMETPVPVSEHAYHMGGS 132 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TLD +K + V SAND AVA+AE + +E FV+ MN + +LG+ T F Sbjct: 133 QIWLEPGEHFTLDEMIKAICVSSANDAAVAVAELVGGSEPAFVEQMNARAASLGMEQTSF 192 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTF 210 NA G+ GH +TARD+A +S I P+ +HY I ++G + NTN + + Sbjct: 193 RNACGLDAEGHLSTARDVAAMSRTILNTCPEVLHYTGIWTDTLRGGATQLINTNKLLRRY 252 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G+KTG T +G I ASA + SLIAVILGA R + +LL GF Sbjct: 253 EGITGLKTGTTGGAGICISASATRNGLSLIAVILGAPSSADRFNAATTLLDYGF 306 >gi|225076059|ref|ZP_03719258.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens NRL30031/H210] gi|224952619|gb|EEG33828.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens NRL30031/H210] Length = 405 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ +A N D P PA+LT++MTAY+ F L+ +T+S + Sbjct: 58 YIVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLQADQMLTVSNVGWKVE 117 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149 S +++ + +K ++SAND A+ +AE+L + +FV+ MN +K LG+ Sbjct: 118 GSRMFLNPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSVDEFVKQMNEEAKRLGMKH 177 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N + Sbjct: 178 THFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYR 237 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL Sbjct: 238 DSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLL 288 >gi|92110365|emb|CAJ87634.1| putative penicillin binding protein 6b [Escherichia coli] Length = 335 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 15/222 (6%) Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALK 109 KLMT YVV + + +T+ ++A + N F K+G +++ + + Sbjct: 13 KLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSVRDLSR 70 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D Sbjct: 71 GLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYD 130 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGF 226 +A+LS I P++ H + K L G N N W + DG+KTG T +GF Sbjct: 131 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHTSGAGF 188 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 N++ASA+ G + LIAV++GA R + + LL G N T Sbjct: 189 NLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 230 >gi|262376081|ref|ZP_06069312.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145] gi|262309175|gb|EEY90307.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145] Length = 382 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 13/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM---LTTPITISKNAS 87 Y L+D TG ++A + PAS+TK+MT+Y++ E+K + LT + N S Sbjct: 34 YVLMDYETGQLLASKNENEKLAPASMTKMMTSYII-----EQKLLSGELTEDEQVRMNES 88 Query: 88 EYPPSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + +S T T L+ +I++S ND + A+AE + E F MN + Sbjct: 89 AWCRGSSAESCMYVPLNGTATALEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K +G++ T F+N+ G+ GHY+TA+DMA L+ I D +Y + K G K N Sbjct: 149 KRIGMTNTSFVNSTGMPAEGHYSTAKDMATLAQHIIKDSSKYYPIYAEKEFTFNGIKQGN 208 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + T DG+KTG T +G+ + S+ +G LI+VI GA R + LL+ Sbjct: 209 RNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPTRLISVIFGAPTMQERATQTRELLAW 268 Query: 263 GFYN 266 G+ N Sbjct: 269 GYAN 272 >gi|150391165|ref|YP_001321214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149951027|gb|ABR49555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 257 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 120/216 (55%), Gaps = 6/216 (2%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMT V+ + K T + +S A+ S K G + + + K +I+ Sbjct: 37 ASITKLMTMLVLLDGIDAGKIKWTDKVEMSPAAASLYGSKIHLKPGEKLPVGDMFKSMII 96 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD---M 170 SAND A+A+AE L T F+ MN +K LGL +HF+N+HG+ + HY++A D M Sbjct: 97 ASANDAAIALAEHLSGTMDNFIDKMNQKAKTLGLKNSHFVNSHGLFEDNHYSSAIDIVKM 156 Query: 171 AILSWRIKTDFPQY--MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ R + + +Y + Y I+ + + +K NTN +GT DG+KTG+T +G + Sbjct: 157 VSMALR-REEILKYSRLKYDYIRKEDNQLQKLVNTNKLIGTIPEVDGLKTGYTPLAGCCL 215 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A+A++ + LIAV+LG + R+K +L+ GF Sbjct: 216 AATALKDNVRLIAVVLGEPRKAVRDKEVIEMLNYGF 251 >gi|297617565|ref|YP_003702724.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297145402|gb|ADI02159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 427 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 135/269 (50%), Gaps = 14/269 (5%) Query: 4 FLVIIAMAMLSNIF-PFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 F V++ +LS F P L++A N + P L++ TG ++ PD PASLTK+ Sbjct: 28 FGVLLICLVLSLGFDPKLALASENPQVQAPSCVLMEATTGKIVWAKNPDQRMAPASLTKV 87 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 +TA + ++ L I + N + +G TL+N L +++ S ND Sbjct: 88 LTALIAL-----ERGDLNDKIKVGPNPPRVEGTRVYLVEGEEATLENLLYAMLLNSGNDA 142 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+AIAE +++ F + MN + LG +HF++ +G+ HYTT+RD+A+++ R Sbjct: 143 ALAIAEHFGGSQQGFARLMNEKAAALGARNSHFVSPNGLSDPNHYTTSRDLAVIA-RAAL 201 Query: 180 DFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + K G+ + N N + + GADG+KTG+T + ++ASA + Sbjct: 202 QNPDFRKIVATKTRPWNGQDWQTTLINQNKLLWKYPGADGVKTGYTTEARNTLIASATRN 261 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264 QS IAV+L + + + +LL GF Sbjct: 262 GQSFIAVVLDEPRGSVAEQDAIALLDYGF 290 >gi|255021081|ref|ZP_05293134.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254969495|gb|EET27004.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 109/215 (50%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ TG ++A + P+ AS+TKLMT Y++F L+ L A Sbjct: 41 YILMNAETGQILATKHAYRPYAIASITKLMTLYLLFQDLQSGHLSLQQQFKPCPAALHTG 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T+ + + V S ND AV A + + FV+ MN T++ LG+ +T Sbjct: 101 GSTMDLRAGVPFTVAQMILGMTVPSGNDAAVEAAHLVSGSVPAFVRKMNRTARQLGMLST 160 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F + G+ + + D+A+L+ I T FPQYM +FQ + G YPN N VG Sbjct: 161 QFYDPDGLPHPNNTASPYDIALLTRAIMTQFPQYMPFFQHEHFTYGGITYPNPNLLVGRV 220 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 GMK+G+T A+G +VA+ Q LIAV+LG Sbjct: 221 PFITGMKSGYTDAAGHCLVATGTQDGVKLIAVVLG 255 >gi|304391674|ref|ZP_07373616.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130] gi|303295903|gb|EFL90261.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130] Length = 384 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ + D PAS+ KLMT VVF +K L TISK+ + + Sbjct: 33 VMDYETGSVLFQKNADELMPPASMAKLMTMEVVFDAVKRGALELDDTFTISKDVWQRGGA 92 Query: 93 NSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S GSTM L+N ++ +IV+S ND A+AIAE + +E F MN ++ Sbjct: 93 TS---GGSTMFADLNDDIALENLIRGVIVQSGNDAAMAIAEGMAGSETGFAGLMNQRARR 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +GL ++F N+ G+ TAR++ +L+ + +P+ + + N N Sbjct: 150 IGLEKSNFTNSTGLPDPNQRVTARELGLLARHLIRTYPELYQIYAEPEFTWNKVRQRNRN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G GADG+KTG+T ASG+ + ASA GD+ +I V+ G + R + ++ F Sbjct: 210 PILGRVDGADGLKTGYTEASGYGLTASAKVGDKRIIIVLNGMSSQAERRNEAIKMMRWAF 269 >gi|190576060|ref|YP_001973905.1| putative family S11 unassigned peptidase [Stenotrophomonas maltophilia K279a] gi|190013982|emb|CAQ47622.1| putative family S11 unassigned peptidase [Stenotrophomonas maltophilia K279a] Length = 264 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 10/240 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD T VI ++ D PASLTKLMTAY + ++E+ +TI+ + + Sbjct: 16 LDAATFAVIHQHNADIARQPASLTKLMTAYAAYECVEERGRSWGDEVTIAADDVHAVADD 75 Query: 94 ST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 T G T+TL L+ L++ S ND A+AIA L ++ F++ MN ++ LGL ++ Sbjct: 76 ETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQPAFLERMNRHARQLGLRSS 135 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F + G+ H ++ARDMA+L+ + D PQ + + + G N A+ Sbjct: 136 WFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAF-VHGSFSRNNQNALLGD 194 Query: 211 LGADGMKTGFTCASGFNIVASAIQG----DQ--SLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTG+T A+GF + A+A + DQ LI V+LG+ R+ R+ + L+ GF Sbjct: 195 DGVDGLKTGYTQAAGFCLAATACRAVPGRDQPVRLITVVLGSESRDARDALVRDQLAAGF 254 >gi|46204603|ref|ZP_00049748.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 391 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF----KKGSTMTLDNALKLLIVKS 115 MT Y++F L++ + L +P+TIS NA+ P + + + L A+K V Sbjct: 1 MTLYMLFEQLEKGRYELDSPLTISANAAA-PGARRRLGLAHPASTILGLRTAIKCRSVTQ 59 Query: 116 ANDIAVAIA---ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++ + E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ I Sbjct: 60 VWPTSIRLPPSRENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTI 119 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A Sbjct: 120 LARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGNVEGVDGIKTGYTRDSGFNLMTAA 179 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLL 260 GD+ ++A++LG +R+++ A L+ Sbjct: 180 KLGDRQIVAIVLGGKSGASRDRIMADLV 207 >gi|89070235|ref|ZP_01157559.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus HTCC2516] gi|89044155|gb|EAR50313.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus HTCC2516] Length = 411 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 132/265 (49%), Gaps = 18/265 (6%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D T ++ E D P PAS++KLMT Y+ F ++ + L + +S++A Y S Sbjct: 39 DVTTETILLEKNADEPLPPASMSKLMTLYMAFEAIESGRLRLDEQLPVSEHAMSYGGSTM 98 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSATHF 152 T+++ L+ +IV S ND + +AE+L TE F + M + +GL+ + F Sbjct: 99 FLDTTDRPTVEDLLRGVIVLSGNDASAVLAEALSPDGTEAGFARLMTERGRQIGLTNSTF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGT 209 N++G H + RD+ +++ R+ DFP F + E G+ N N +G Sbjct: 159 ANSNGWPAPDHRMSVRDLGVVATRLIEDFPDLYPMFAEQTFEYDGRAPTNVRNRNPLLGL 218 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +GADG+KTG T +G+ +V SA+Q D+ ++ V+ G LD +T + S Sbjct: 219 GIGADGLKTGHTEEAGYGLVGSAVQEDRRVVFVLAG-LD-STAERAEES----------- 265 Query: 270 RKKINYIIKDFYQQNLSNEVPNISE 294 + +N+ + + ++ L+ I+E Sbjct: 266 ERVVNWAFRQYVEKGLTEAGTRIAE 290 >gi|110633932|ref|YP_674140.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110284916|gb|ABG62975.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 382 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 11/255 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 LLD TG ++ D P+ PASL KLMTA ++ + LK + + +S++A Sbjct: 35 LLDGETGAILYSKNADEPFPPASLAKLMTAELLLNALKTGRISMQREFEVSEHAWRTGGA 94 Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P +T S + ++ L+ +IV+ AND + +AE + +E F + M ++ LGL Sbjct: 95 PSGTATMFAAVNSRVPIEALLQGIIVQQANDGCIILAEGMAGSENAFARLMTERARALGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F+N G+ G T R++A+LS + ++P+Y YF + E + N + Sbjct: 155 TRSVFVNPTGLPAEGQQVTVREIALLSRHLWREYPEYYRYFGQEDFEWNRIRQRNRVLRL 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 GT GADG+ GFT G+ I AS + + L AV+ G + R + + +L GF + Sbjct: 215 GT--GADGLALGFTEGQGYAIAASMERNGKRLFAVLAGIPEEQERPEETRKMLEWGF-SA 271 Query: 268 TDRKKI---NYIIKD 279 +R+++ II D Sbjct: 272 FERRQLFTAGEIIGD 286 >gi|114762661|ref|ZP_01442095.1| D-alanyl-D-alanine carboxypeptidase [Pelagibaca bermudensis HTCC2601] gi|114544571|gb|EAU47577.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. HTCC2601] Length = 391 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 5/243 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ D PAS++KLMT Y+ F +++ + L + +S++A Y S Sbjct: 36 VLDYTTGTVLMAKNADEALPPASMSKLMTLYMAFEAVRDGRLQLDERLPVSQHAMSYGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND IAE+L TE F + M ++ LG++ + Sbjct: 96 TMFLNTTDRVAVEDLLRGIIVLSGNDACAVIAEALSPNGTEAGFAELMTRRAQQLGMTNS 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F NA G H + RD+ +L+ RI DFP++ F + E G+ N N + Sbjct: 156 TFENASGWPAPNHRMSVRDLTLLATRIIEDFPEFYPIFAERRFEFDGRAPSNVNNRNPLL 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +GADG+KTG T +G+ +V SA Q + +I I G R + + S+++ F Sbjct: 216 RLDIGADGLKTGHTQEAGYGLVGSAEQDGRRVIFTISGLDSERARAEEAESIVNWAFRQF 275 Query: 268 TDR 270 +R Sbjct: 276 AER 278 >gi|85374069|ref|YP_458131.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis HTCC2594] gi|84787152|gb|ABC63334.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis HTCC2594] Length = 347 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 15/242 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G + PD + PAS+TK+MTAY F +K+ K T T S+ A+ Sbjct: 2 LVDMASGQTLYARNPDRRFVPASITKVMTAYTAFELMKQGKLAPGTRFTFSEAAA----- 56 Query: 93 NSTFKKGSTMTLDNALKLLIVK--------SANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + ++ GSTM LD + + SAND ++ +AE + ++ MN + Sbjct: 57 DEWYRTGSTMFLDRGSETAVTDLLMGITTVSANDGSIVLAEGAAGSVDNWLDLMNAHADA 116 Query: 145 LGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPN 202 LG+ +HF +G G +TTARD+ L+ + T+ P Y YF +GL G N Sbjct: 117 LGMHQSHFGTPNGWPDEGRTFTTARDLVTLAKALITEHPGLYARYFGHRGLRTNGIAQDN 176 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 + G GADG+KTGFT +G+ + SA + + L+ V+ + +R++ + +L+ Sbjct: 177 YDPITGRIEGADGIKTGFTNQAGWGFLGSAERDGRRLVMVVAASPGMRSRDETARALMEW 236 Query: 263 GF 264 GF Sbjct: 237 GF 238 >gi|89053769|ref|YP_509220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] gi|88863318|gb|ABD54195.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] Length = 398 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 5/216 (2%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +G V+ D PAS++KLMT + F L++ + L T + +S++A + S Sbjct: 42 DHASGQVLLALNADEALPPASMSKLMTLLMAFEALRDGRLTLETRVPVSEHAMSFGGSTM 101 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSATHF 152 T++ ++ +++ S ND +V + E+L TE+ F M ++ LG+ + F Sbjct: 102 FLNTQDRPTIEELIRGVVIVSGNDASVVLGEALSPDGTEEGFATMMTQRAQQLGMMNSTF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGT 209 NA G GH + RD+ IL+ R+ +FP+Y YF + + + N N +G Sbjct: 162 RNASGWPADGHAMSMRDLGILAQRLIEEFPEYYGYFVETEFDYEDRSPANRFNRNPLLGL 221 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +GADG+KTG T +GF +V SA+QGD+ + VI G Sbjct: 222 GIGADGLKTGHTQEAGFGLVGSAMQGDRRVTFVITG 257 >gi|254456113|ref|ZP_05069542.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter sp. HTCC7211] gi|207083115|gb|EDZ60541.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter sp. HTCC7211] Length = 383 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 LLD ++ ++ E PD PAS+TK+MT+ + F +K + L +S+NA SE Sbjct: 32 LLDYHSDEILYEKDPDRKIFPASMTKIMTSIIAFDLIKNGELSLDDKFIVSENAWRLSES 91 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G ++++N LK +I+ S ND VA+AE + TE +F M +K +G+ Sbjct: 92 GYSSMFIMVGDQISVENLLKGIIISSGNDACVALAEGIAGTEDEFAILMTEKAKEIGMEN 151 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTN 204 T+F N+ G+ + +T RD+ I+S + ++P Y YF+ K G N N Sbjct: 152 TNFSNSSGINSPDNLSTVRDIMIMSKYLIKNYPDYYKYFKEKKFTWDRTGGDPITQGNRN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + L ADG+KTG+ +++ +S + + LIAV G +N+R++ S LL+ G Sbjct: 212 PLLYKNLDADGIKTGYLSYEKYSLASSINRNGRRLIAVGSGFNSKNSRSRESIKLLTYGL 271 Query: 265 YN 266 N Sbjct: 272 TN 273 >gi|240850634|ref|YP_002972034.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240267757|gb|ACS51345.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 387 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 5/236 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 LLD +TG ++ E D P+ PASL KLMT VVF LKE T +S+NA Sbjct: 35 LLDDDTGTILYEKQSDIPFFPASLAKLMTVEVVFHHLKEGLLKSTQKFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L+ LI+ + ND A+ +AE + E F + MN +K +GL Sbjct: 95 PSGTTTMFAKIKTEISVSDLLRGLIIMNGNDAAIILAEGISGHEAHFAKLMNQRAKIVGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HF+NA G+ + G + T RDM IL+ I ++P Y ++ N N + Sbjct: 155 SQSHFVNATGLPEEGQFVTVRDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPLI 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G +G G++ GF++VA+ + + L I G D K +L G Sbjct: 215 SKEIGVEGFGFGYSGKEGFSMVATISKNHRRLFLAINGLQDGKKYTKEIERILQWG 270 >gi|147677612|ref|YP_001211827.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146273709|dbj|BAF59458.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 381 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 14/238 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E PAS TK+MTA + + L +T+S NA+ + Sbjct: 47 LMDARTGQILYEKNARQKRPPASTTKIMTALLAL-----EGGDLQQIVTVSPNAASTGEA 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +TL+ + +++S ND VAIAE + TE+ FV MN +K +G T F Sbjct: 102 SLDLRPGEKLTLEELIYGAMLESGNDACVAIAEHISGTEENFVLLMNQKAKMIGAEDTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVG 208 N++G+ GH TTARD+A+++ + ++ D + +G + G+K NTN + Sbjct: 162 KNSNGLPAAGHCTTARDLAVITRYALRNDI--FRKVVSTRGRAVGGEKCRYLSNTNRLLW 219 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ++ ADG+KTG T +G +VASA + + LI+V+L + DR S L+ GF N Sbjct: 220 SYAWADGVKTGTTGEAGNCLVASATKDGRQLISVVLHSDDRWLD---SVKLMEFGFEN 274 >gi|89099052|ref|ZP_01171931.1| DacF [Bacillus sp. NRRL B-14911] gi|89086182|gb|EAR65304.1| DacF [Bacillus sp. NRRL B-14911] Length = 371 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ E + PAS+TK+MT ++ + + K + I S+ A+ S Sbjct: 24 LIERDTGAVLYEQNSNEQLPPASMTKIMTMLLIMEAIDKGKLSMDEKIRASEYAASMGGS 83 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT + LK + + S ND +VA+AE L +E++FV+ MN +K+LGL T F Sbjct: 84 QIFLEPGEEMTTEQMLKGIAIGSGNDASVAMAERLAGSEEEFVKLMNKKAKDLGLKDTIF 143 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 NA G+ HY+TA DMA+++ + ++ ++ E KK+ NTN V Sbjct: 144 KNATGLPVTEHYSTAHDMALMAKELLKYEGITKFTGTYEAYLREDTDKKFWLVNTNRLVR 203 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A + +IAV+ GA RN +L F Sbjct: 204 FYPGVDGLKTGFTNEAKYCLTATAEKNGMRVIAVVFGAPTSKERNAQVTKMLDYAF 259 >gi|315644241|ref|ZP_07897411.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315280616|gb|EFU43905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 330 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 20/252 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D P PAS++KLMT V+ +K K + IS AS Sbjct: 42 LMDLNTGRILLSENGDIPLPPASMSKLMTELVILDDIKTGKKSWDDEVQISDTASGVSGI 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATH 151 K G +T+ + + V SAND AVA+AE +E+ FVQ MN +K +G+ S+TH Sbjct: 102 KIALKSGEFLTVRELFQSITVYSANDAAVALAEHFAGSEEAFVQKMNAKAKEIGMSSSTH 161 Query: 152 FMNAHGVVQHGH-----------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 F+NA GV H TA D A L+ + P + +I G+ Sbjct: 162 FVNASGVESHTDNDQEWSSERETVMTAEDTAKLAAHLIKSHPDILSTSSKTQTKISGRNL 221 Query: 200 -YPNTNW---AVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTNW ++G ++ G DG+KTG+T +G+ +A + LIAV++G + R Sbjct: 222 YLSNTNWMLPSLGGPYSYEGTDGLKTGYTVNAGYCFTGTAEKQGSRLIAVVMGTESKEAR 281 Query: 253 NKVSASLLSMGF 264 + + L GF Sbjct: 282 FEETRKLFDYGF 293 >gi|225018728|ref|ZP_03707920.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum DSM 5476] gi|224948456|gb|EEG29665.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum DSM 5476] Length = 395 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ +TG V++E+ D PAS+TK+M ++ + L +T S++A+ Sbjct: 48 YILMEASTGKVLSESNADEQMAPASITKIMVMLLLMERIDAGTVTLDDMVTTSEHANSMG 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G M++++ LK V SAND AVA+AE + +E+ F + MN +K LG+ T Sbjct: 108 GTQIWLEVGEQMSVNDLLKATAVNSANDAAVALAEYMAGSEEAFAELMNQRAKELGMVNT 167 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWAVG 208 F NA G+ GH +TARD+A+++ + P+ Y I L NTN V Sbjct: 168 TFKNATGLDADGHLSTARDIALMTQEL-LKHPKITEYTSIYMDSLRDGTTGLVNTNKMVR 226 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G +GMKTG T +G + +A + +LI+V +G+ R + + +LL GF Sbjct: 227 FYEGCNGMKTGTTDDAGSCLSCTATRDGMTLISVSMGSTTSKERFQSARTLLDHGF 282 >gi|198284286|ref|YP_002220607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665720|ref|YP_002426947.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248807|gb|ACH84400.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517933|gb|ACK78519.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 388 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 119/234 (50%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 YTL+D +TG +IA + PASLTKLMTAY+ + ++ I IS A + Sbjct: 47 YTLMDYDTGQIIAAKSENLRRAPASLTKLMTAYLTYQAIQGGTLTAQENIPISNTAWKTG 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ + +D L L++ S ND AVA+AE++ ++ FV MN+++ L L T Sbjct: 107 GSSMFVQPNVPANVDQLLHGLLIDSGNDAAVALAEAVGGSQSGFVTLMNDSALRLNLHNT 166 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ N G+ + YTTA D+A LS FPQ + + K G + N + Sbjct: 167 HYSNVDGLPDNNLYTTALDVAKLSRAFIRQFPQVIQITKEKSYTYNGITQRSWNPVLFRD 226 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T ASG+ I A+AI+ + LIAV+LG +LL G+ Sbjct: 227 PTVDGLKTGLTDASGYCIDATAIRNGRRLIAVVLGGPSWAGSTNAVEALLDYGY 280 >gi|218458342|ref|ZP_03498433.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5] Length = 219 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 2/166 (1%) Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + PN N +G F G Sbjct: 1 VNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFSLEGFTTGQQNVPNLNMLIGRFAG 60 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ADGMKTGF CASGFN + SA + ++L++V+LG R +A+LL GF + Sbjct: 61 ADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPGND 120 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 +K + Q ++V +I+ ++C+ + I T+ + + K S Sbjct: 121 TLGSLKPYGQGQ--DQVTDITADICSAKGAKIRSETRDEVGRMKVS 164 >gi|308174134|ref|YP_003920839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM 7] gi|307606998|emb|CBI43369.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus amyloliquefaciens DSM 7] gi|328552733|gb|AEB23225.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens TA208] gi|328912469|gb|AEB64065.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus amyloliquefaciens LL3] Length = 389 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ PAS+TK+MT ++ L + ++ + S++A+ S Sbjct: 42 LIERDTGSILYNKNSRERLAPASMTKIMTMLLIMEALDKGNIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E+ FV MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWR-IKTD-FPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ + GHY++A DMA ++ +K D Q+ ++ E KK+ NTN + Sbjct: 162 KNPTGLPEKGHYSSAYDMAKMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIK 221 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A +G+ +IAV+ GA RN +L F Sbjct: 222 FYPGVDGVKTGFTGEAKYCLTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAF 277 >gi|225182115|ref|ZP_03735543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225167202|gb|EEG76025.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 382 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 14/282 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L++ ++G + E D P PAS TK+MT + F L+ +S+NA +E Sbjct: 34 LMEASSGQFLYEKNADTPLPPASTTKIMTLLLAFEALERGDIDWDDTTIVSRNAWSAEVV 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +++ + + + + SAND VA+AE L +E+ FVQ MN ++ LG++ T Sbjct: 94 GSRMFLDLDQEVSIRDLIYGISIVSANDGTVALAEHLSGSEEAFVQQMNQRAQELGMTNT 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---V 207 F N G+ GH +ARD+AILS + + P + E NW + Sbjct: 154 VFRNTSGLPADGHVMSARDIAILSRELIVNHPGILDIETQP--EFTFNDIHQYNWNRRFL 211 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN- 266 +F GA+G+KTG+T S FN+ +A++ + LI+V++GA + R ++ LL+ GF Sbjct: 212 SSFEGANGLKTGWTDESRFNLAGAALRDGRQLISVVMGAESESERVAATSELLNHGFNQF 271 Query: 267 --KTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKE 302 +T +K + +KD QQ + VP E +E Sbjct: 272 SPQTIAQKGEVVAEVAVKDGRQQVVPVTVPQEVEVAVPQGRE 313 >gi|254455195|ref|ZP_05068630.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus 238] gi|198263605|gb|EDY87877.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus 238] Length = 399 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTP--ITISKNAS 87 +LD +TG V+ D P PAS+ KLMT Y+ F L + LT + +S++ Sbjct: 36 VLDHSTGVVLLAKNADDPLPPASMLKLMTLYMAFEAINPLNGQDPFLTVDDVLPVSQHCM 95 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNL 145 +Y S + +D+ L+ +IV S ND + IAE L + TE F Q M ++ L Sbjct: 96 DYTGSTMFLDTTDRVRVDDLLRGIIVLSGNDASCVIAEGLSRNGTEAGFAQQMTVRAQQL 155 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-- 203 G+ + F N++G G + RD+ +L+ R+ TD+P + F + + G+ NT Sbjct: 156 GMLNSSFANSNGWPAAGQRMSMRDLGLLANRLITDYPTFYPLFAEQEFDYDGEHPANTRN 215 Query: 204 -NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + +GADG+KTG T +G+ +V SA QGD+ +I V+ G R + + +++ Sbjct: 216 RNPLLSLGIGADGLKTGHTIEAGYGLVGSAKQGDRRIIFVVTGHETVQERAEEAERIVNW 275 Query: 263 GFYNKTDR 270 F T R Sbjct: 276 AFRQFTQR 283 >gi|229059652|ref|ZP_04197030.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603] gi|228719665|gb|EEL71264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603] Length = 317 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + PAS++K+MTAY+V + K P+ IS+ +++ + Sbjct: 70 IIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWEDPVKISEKSAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 KIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLMNEKAKQLEMSDKAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWA 206 F NA G+ + G T TA D++ L++ + D+P+ + ++ L NTN Sbjct: 190 FANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLRQSQLAFNNINVTNTNEM 249 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVVMGTKSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|92117541|ref|YP_577270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91800435|gb|ABE62810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 414 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 5/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ N+G V+ E D P+S+ KLMT VVF +++ + LT IS+N Sbjct: 55 PTAILVEANSGSVLFEKNADELHAPSSMMKLMTVEVVFDAIRKGQIKLTDEFVISENTWR 114 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST S +++D+ L I++S ND +A+AE + E F + M ++ Sbjct: 115 KGGAPSGGSTMFAAINSRVSVDDLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMTARAR 174 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +LG++ + F N++G+ G+ T R++A+L+ I +P + F + + N Sbjct: 175 DLGMTRSTFANSNGLPDPGNKMTVRELAVLARHIVLTYPDFYKLFGEREFTWNKIRQFNR 234 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG+KTG+T G+ +V SA+Q LI V+ G + R + LL G Sbjct: 235 NPLLTAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLASADDRAAAAKKLLEWG 294 Query: 264 FYN 266 F N Sbjct: 295 FRN 297 >gi|313901070|ref|ZP_07834558.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] gi|312954028|gb|EFR35708.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] Length = 395 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 22/256 (8%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 +A + K Y L++ TG VI + PAS+TK+M ++F L +KK ++ Sbjct: 40 LAPSAKAAY--LVENTTGKVIYAKHETDKLYPASMTKMMGLLLIFEALHDKKISWDESVS 97 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S+ A+ S + G +M++ + +K + + SAND VA+AE + + FV MN+ Sbjct: 98 ASEYAASMGGSQVFLEPGESMSVRDMVKSICIASANDAMVAMAEKVGGSNDHFVAMMNDK 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-----------WRIKTDFPQYMHYFQI 190 +K L LS +HFMNA G+ HYT A+DM+I++ RI + + Y+ Sbjct: 158 AKELKLSNSHFMNATGLHDPEHYTCAKDMSIIARALIAEGGEELLRITSTYDAYIR---- 213 Query: 191 KGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 E KK+ NTN + + G DG+KTGFT + I +A + D L+AV +G Sbjct: 214 ---ENTDKKFWLVNTNKLLKQYEGVDGLKTGFTTEAMSCITVTAKKKDLRLVAVAMGEPS 270 Query: 249 RNTRNKVSASLLSMGF 264 RN +L GF Sbjct: 271 SKQRNAEIKQMLDYGF 286 >gi|170744322|ref|YP_001772977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168198596|gb|ACA20543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 402 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 129/244 (52%), Gaps = 5/244 (2%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 ++ P+ LLD ++G V+ E D P++PAS+ KLMT V+F +++ + + IS+N Sbjct: 36 SQAPHAILLDADSGSVLYEKNADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISEN 95 Query: 86 ASEYPPS----NSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A ++ + +S F + S + L + L+ +IV+S ND A+A AE++ TE F Q MN Sbjct: 96 AWKHGGAGGGGSSMFAQLNSKVKLPDLLRGIIVQSGNDAAIAAAEAIGGTEDNFAQIMNR 155 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ +GL+ + F N G TARD+A L+ + +P F + + Sbjct: 156 HAREIGLTRSTFRNPTGYSAPDQKVTARDLAKLAIHLIETYPDEYKLFSEREFTWNKIRQ 215 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + LGADG+KTG+ SG+ + SA+Q Q LI V+ G + R S LL Sbjct: 216 QNRNPLLTMDLGADGLKTGYLEESGYGLTGSAVQNGQRLILVVSGLKKASDRAAESRKLL 275 Query: 261 SMGF 264 GF Sbjct: 276 DWGF 279 >gi|312115142|ref|YP_004012738.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] gi|311220271|gb|ADP71639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] Length = 410 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 127/246 (51%), Gaps = 17/246 (6%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITI------- 82 TL+D +G + E D + PAS++K+MT V+F LK + + T P+++ Sbjct: 33 TLIDVESGATLFEKNADRLFAPASMSKIMTLAVIFKKLKAGEITMDTEFPVSLYAWRNGG 92 Query: 83 --SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S+ S + P N T K + + ++ + V++AND +A+AE + TE F + M Sbjct: 93 APSRTTSMFIPLNQTAK------VSDLIQGIAVQNANDACIAVAEGISGTEDAFAKLMTE 146 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL + F N+ G+ G+ TAR++A LS + +P YF K + + + Sbjct: 147 EARALGLQKSTFGNSTGLPHPGNQMTARELAALSIHVIKTYPDLYPYFGQKEFKYRTYTF 206 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N T + ADG+K GFT G++I ASA++ + L+ V+ G R + + +L Sbjct: 207 RNHNPLQATAIAADGLKPGFTEGVGYSIAASAVRDGRRLVLVMNGLESERDRREEAQKIL 266 Query: 261 SMGFYN 266 + GF N Sbjct: 267 NWGFVN 272 >gi|229166858|ref|ZP_04294605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621] gi|228616486|gb|EEK73564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621] Length = 317 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + PAS++K+MTAY+V + K P+ IS +++ + Sbjct: 70 IIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWEDPVKISAKSAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 KIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLMNEKAKQLEMSDKAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ ++ + Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVTSTNEM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTKSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|229011286|ref|ZP_04168478.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM 2048] gi|228749942|gb|EEL99775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM 2048] Length = 317 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + PAS++K+MTAY+V + K P+ IS +++ + Sbjct: 70 IIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWEDPVKISAKSAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 KIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLMNEKAKQLEMSDKAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ ++ + Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVTSTNEM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTKSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|84516821|ref|ZP_01004179.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis SKA53] gi|84509289|gb|EAQ05748.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis SKA53] Length = 392 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 21/269 (7%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ET+ Y + D TG V+ D P PAS++KLMT Y+ F + + + + + +S Sbjct: 26 ETSARAAY-VYDQTTGTVLLAKDADLPLPPASMSKLMTIYMAFEAIADGRLSIDDVLPVS 84 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNT 141 +A+ + S+ + +++ L+ +IV S ND +V +AE+L TE F + M + Sbjct: 85 AHAASFGGSSMFLDTTDRVRVEDLLRGVIVLSGNDASVVLAEALSPDGTEAGFGRMMTDR 144 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ LG++ + F+NA G H + +D+ ILS R+ +DFP + F + P Sbjct: 145 ARQLGMTQSFFVNASGWPAAEHRMSVKDLGILSSRLISDFPTFYPLFSETEFAFD-NRVP 203 Query: 202 ----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +GADG+KTG T +G+ +V SA+QG++ +I V+ G + R++ Sbjct: 204 SNSQNRNPILAMGIGADGLKTGHTQEAGYGLVGSAMQGNRRVIFVVTGL--QTARDRAEE 261 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 S + +N+ + F +++L+ Sbjct: 262 S-----------ERIVNWAFRQFAERDLA 279 >gi|229017289|ref|ZP_04174193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273] gi|229023465|ref|ZP_04179962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272] gi|228737818|gb|EEL88317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272] gi|228743990|gb|EEL94088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273] Length = 317 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + PAS++K+MTAY+V + K P+ IS +++ + Sbjct: 70 IIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLENIHNGKVHWEDPVKISAKSAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 KIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLMNEKAKQLEMSDKAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ ++ + Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVTNTNEM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTKSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|329925045|ref|ZP_08279989.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328940164|gb|EGG36496.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 323 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 25/271 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D P PAS++KLMT V+ +K K + IS AS+ Sbjct: 42 LMDLNTGRILLSENGDLPLPPASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATH 151 K G +T+ + + V SAND +VA+AE +E+ FV+ MN +K +GL SAT Sbjct: 102 KIALKSGEILTVRELFQSITVYSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATR 161 Query: 152 FMNAHGVVQ---HGH--------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 F+NA GV Q +GH TA D A L+ + P + +I G+ Sbjct: 162 FVNASGVEQGTANGHAWSSDGETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNL 221 Query: 200 -YPNTNW---AVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTNW ++G ++ G DG+K G+T +G+ +A + LIAV++G + R Sbjct: 222 YLSNTNWMLPSLGGPYSYEGTDGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEAR 281 Query: 253 NKVSASLLSMGFYNK-TDRKKINYIIKDFYQ 282 + + L GF T R++++ D++Q Sbjct: 282 FEETRKLFDYGFSKTLTWRERLD----DWFQ 308 >gi|261410081|ref|YP_003246322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261286544|gb|ACX68515.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 323 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 25/271 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D P PAS++KLMT V+ +K K + IS AS+ Sbjct: 42 LMDLNTGRILLSENGDVPLPPASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATH 151 K G +T+ + + V SAND +VA+AE +E+ FV+ MN +K +GL SAT Sbjct: 102 KIALKSGEILTVRELFQSITVYSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATR 161 Query: 152 FMNAHGVVQ---HGH--------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 F+NA GV Q +GH TA D A L+ + P + +I G+ Sbjct: 162 FVNASGVEQGTANGHAWSSDGETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNL 221 Query: 200 -YPNTNW---AVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTNW ++G ++ G DG+K G+T +G+ +A + LIAV++G + R Sbjct: 222 YLSNTNWMLPSLGGPYSYEGTDGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEAR 281 Query: 253 NKVSASLLSMGFYNK-TDRKKINYIIKDFYQ 282 + + L GF T R++++ D++Q Sbjct: 282 FEETRKLFDYGFSKTLTWRERLD----DWFQ 308 >gi|241668486|ref|ZP_04756064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877020|ref|ZP_05249730.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843041|gb|EET21455.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 444 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+ A+ Sbjct: 55 PAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ------------------------- 183 THF N G+ YTTA DMA+L+ +FP Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIADR 234 Query: 184 -------------YMHYFQIKGLEIKG-----KKYP---------NTNWAVGTFLGADGM 216 + F KGL+ + K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRSSGNVLESFSAKGLDSQAQDKCSKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLL 338 >gi|167627934|ref|YP_001678434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597935|gb|ABZ87933.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 444 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 52/284 (18%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+ A+ Sbjct: 55 PAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G++ Sbjct: 115 TGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGMN 174 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ------------------------- 183 THF N G+ YTTA DMA+L+ +FP Sbjct: 175 NTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIADR 234 Query: 184 -------------YMHYFQIKGLEIK-----GKKYP---------NTNWAVGTFLGADGM 216 + F KGL+ + K +P N N + TF GADGM Sbjct: 235 KQCLPKFDRSSGNVLESFSAKGLDSQAQDKCAKLFPKGDNFVLQNNRNRLLFTFDGADGM 294 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 KTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL Sbjct: 295 KTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLL 338 >gi|323136276|ref|ZP_08071358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] gi|322398350|gb|EFY00870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] Length = 393 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 7/271 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++L+ +S++F ++A+ +P L+D T V+ E D PAS K++ Sbjct: 5 RYLIAAVFVAVSSLFSGSALAQAFQTSVPNAILIDAGTNTVLFEKGADDLVTPASTVKIL 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNST--FKKGSTMTLDNALKLLIVKS 115 TA ++F L E + L T+S+ A P S K S T+++ L+ L++ S Sbjct: 65 TAEMIFRELTEGRLKLGDVFTVSEYAWRNGGAPAGGSAMFLKVNSQATVEDLLRGLLIDS 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A+ +AE + +E+ FV MN + LGL + F N G T R++A L+ Sbjct: 125 GNDAALVLAEGVAGSEEAFVMRMNKRASELGLVKSRFGNPWGKASDDQKVTPREVAKLAL 184 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + +P + YF K + N N + +GADG+KTG F IV SA Q Sbjct: 185 HVIRTYPDFYKYFGEKEFTWNNIRQQNRNPLLTMSIGADGLKTGNIEKGDFGIVGSANQE 244 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + LI + GA R + + LL GF N Sbjct: 245 GRRLIVAVYGAKTAKERAEEARKLLQWGFRN 275 >gi|317121887|ref|YP_004101890.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591867|gb|ADU51163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 438 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 8/248 (3%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 L+D TG + D PASL K+MT +VF L+E + L + +S+ A Sbjct: 84 VLVDATTGQELYAQNADELIPPASLAKIMTLDLVFHALEEGRLALDQQVPVSEAAWRLSV 143 Query: 91 ------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 PS + G + +++ ++ + V S ND + +AE++ +E+ FV+ MN + Sbjct: 144 QAGLGGPSAMFLEVGERVRIEDLIRGVAVASGNDASTVLAEAVAGSEEAFVRLMNQHAAE 203 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNT 203 +G+ + F N+HG+ + TARDMA L+ + P + Y +K E K PN Sbjct: 204 IGMKNSVFSNSHGLPGGQQHVTARDMARLALHVLEAHPDILRYTSLKYFEWKDFAPQPNY 263 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG +G+++VA+A GD+ L++V+LGA R S LL G Sbjct: 264 NRLIFRDPRVDGLKTGHLSEAGYHLVATARDGDRRLVSVVLGAASDALRVGESQRLLDYG 323 Query: 264 FYNKTDRK 271 F T+ + Sbjct: 324 FQQFTNTR 331 >gi|229084940|ref|ZP_04217192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44] gi|228698256|gb|EEL50989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44] Length = 340 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G V+ +N + PAS++K+MTAY++ + K + IS +++ + Sbjct: 93 IIDASDGQVMYKNNEEEQLAPASMSKMMTAYILLENIHNGKVHWDDQVKISAKSAQAEGA 152 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + G +T+ + L+++SAN+ AVA+AE + KTE+ F Q MN T+K L LS AT Sbjct: 153 RIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHMAKTEQDFAQVMNQTAKQLELSEATK 212 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWA 206 F NA G+ + G T T D+A L++R+ D+P+ + ++ L +TN Sbjct: 213 FANASGLQEADGSETKMTVADVAKLAYRLVKDYPEILDVTHLRQSQLAFNNITVTSTNEM 272 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G DG+KTGFT ++G+ +A QGD+ ++ V++G R + L+ Sbjct: 273 LNPANQELYMEGMDGLKTGFTDSAGYCFTGTAKQGDKRIVTVVMGTKSEMKRFTETHKLM 332 Query: 261 SMGF 264 S GF Sbjct: 333 SYGF 336 >gi|154686590|ref|YP_001421751.1| DacF [Bacillus amyloliquefaciens FZB42] gi|63146679|emb|CAG28930.1| penicillin binding protein [Bacillus amyloliquefaciens FZB42] gi|154352441|gb|ABS74520.1| DacF [Bacillus amyloliquefaciens FZB42] Length = 389 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ PAS+TK+MT ++ L + K ++ + S++A+ S Sbjct: 42 LIERDTGSILYNKNSRERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+ LK + + S ND +VA+AE + +E+ FV MN +K LGL T F Sbjct: 102 QIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWR-IKTD-FPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ + HY++A DMA ++ +K D Q+ ++ E KK+ NTN + Sbjct: 162 KNPTGLPEKDHYSSAYDMAKMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIK 221 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTGFT + + + A+A +G+ +IAV+ GA RN +L F Sbjct: 222 FYPGVDGVKTGFTGEAKYCLTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAF 277 >gi|254995301|ref|ZP_05277491.1| hypothetical protein AmarM_05055 [Anaplasma marginale str. Mississippi] Length = 370 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 1/256 (0%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ K P+ + + + V+ E+ D P+S++KLMT Y+VF L + Sbjct: 24 PSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSSMSKLMTLYLVFQHLHAGLIKMD 83 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++S++A + S++ K G + + + + V S ND +A+AE + ++++FV+ Sbjct: 84 DTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVED 143 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 +N+ +K + L+ + F N G GH + RD+ LS RI DFP+Y H F K G Sbjct: 144 INSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNG 203 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +G DG+KTG T +G+ I ASA Q D + V++ L T Sbjct: 204 VTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASA-QKDNRRVFVVVNGLKTETERAYET 262 Query: 258 SLLSMGFYNKTDRKKI 273 L + +N+ + K + Sbjct: 263 KRLLLYAFNRFETKVV 278 >gi|114799690|ref|YP_760518.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] gi|114739864|gb|ABI77989.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] Length = 378 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 6/240 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 Y ++D TG ++ D P PAS+TK+MTA+VVF + + LT T+S++A Sbjct: 27 YAVIMDHATGKILYSKRGDEPMTPASMTKMMTAFVVFELIDRGELSLTDKFTVSEDAWRR 86 Query: 87 SEYPPSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +P ST T T++ L +I S ND + +A+ + +E+ F + M + Sbjct: 87 GGFPSGTSTMGLVPKDTPTVEELLHGVITMSGNDACIVLAQGISGSEEAFSRRMTEMAHE 146 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGLS+ +F+N G+ GH +A D+A L+ +PQY ++ + + N N Sbjct: 147 LGLSSVNFVNTTGLEGDGHVVSAEDLARLAKMTIDKYPQYYEWYSLPSYTWREYTQANRN 206 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GADG+KTG +SG+ + ASA++ V+ G R + S L+ + F Sbjct: 207 PLL-EVAGADGLKTGHLESSGYGLTASAVRDGVRRTIVVNGLPTMAARAQESERLMRVAF 265 >gi|118444410|ref|YP_878580.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118134866|gb|ABK61910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 410 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 134/255 (52%), Gaps = 27/255 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D P+ PAS TK+MTA L +K L +TI KNA++ S Sbjct: 38 LMDKNTGQILYSKNLDSPYPPASTTKIMTA-----LLALEKCNLDDVVTIGKNATDIDGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T+ + L L+++SAND AVA+AE + + ++FV+ MN +K LG T+F Sbjct: 93 KIYIFEGEKLTIRDLLYSLLLQSANDCAVALAEHISGSTQEFVKLMNTRAKELGCKNTNF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVG 208 +N HG+ H T+ARD+A+ I + ++ + +I ++ K PN + +G Sbjct: 153 VNPHGLYDDKHRTSARDLAL----ILRELSKHEDFKKIATTQVYVINPTNKEPNKRF-IG 207 Query: 209 T------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + G +G KTG+T S + VA+A + ++SLIAV+L + V Sbjct: 208 NKDKLVLKRSKCYYEGCEGGKTGYTIQSKHSFVATATRDNKSLIAVLLHDAKHTYWDDV- 266 Query: 257 ASLLSMGFYNKTDRK 271 +L + GF N T K Sbjct: 267 INLFNFGFSNYTREK 281 >gi|311030730|ref|ZP_07708820.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13] Length = 387 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 158/345 (45%), Gaps = 37/345 (10%) Query: 1 MRQFL-VIIAMAMLSNIF-PFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++F+ IIA+A + F P + E T L++ +TG V+ E P Sbjct: 1 MKKFITAIIAIAFTFSAFSPVVGAEEKSVQLTENARSAILIERDTGQVLYEKNGHEKLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + + + I S+ A+ S + G MT D L+ + + Sbjct: 61 ASMTKIMTMLLIMEAIDKGELTWDEKIRTSEYAASMGGSQIFLEPGEEMTTDEMLRGIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE + +E FV MN +K LGL T F N G+ HY+TA DMA++ Sbjct: 121 ASGNDASVAMAERIAGSEAAFVDRMNAKAKELGLENTLFQNPTGLPAKNHYSTANDMAVM 180 Query: 174 SWR------IKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASG 225 + I QY Y + + KK+ NTN V + G DG+KTGFT + Sbjct: 181 AKELLKFEGITKYTGQYEDYLR----QDSEKKFWLVNTNKLVRFYPGVDGVKTGFTQEAK 236 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + + A+A + + +IAV+ GA RN ++L F Y Y++N+ Sbjct: 237 YCLTATAKKDNMRVIAVVFGAPTPKDRNAQITNMLDFAFS--------QYKTHPMYERNV 288 Query: 286 SNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + IS +EV E I+ T+ E D D EKI Sbjct: 289 AVGRVEISKGSQKEVDAVTSEPISVLTKKGENTD------DVEKI 327 >gi|163939795|ref|YP_001644679.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|229132823|ref|ZP_04261668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST196] gi|163861992|gb|ABY43051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|228650650|gb|EEL06640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 317 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + PAS++K+MTAY+V + K P+ IS +++ + Sbjct: 70 IIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWEDPVKISAKSAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 KIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLMNEKAKQLEMSDKAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWA 206 F NA G+ + G T TA D++ L++ + D+P+ + ++ L NTN Sbjct: 190 FANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLRQSQLAFNNINVTNTNEM 249 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVVMGTKSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|167582899|ref|ZP_02375773.1| family S11 unassigned peptidase [Burkholderia thailandensis TXDOH] Length = 333 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDETVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATLMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFSKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA---IQGDQS---LIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A I G ++ +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPIGGARAPHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|103486742|ref|YP_616303.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis RB2256] gi|98976819|gb|ABF52970.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis RB2256] Length = 273 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 13/245 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-----KNAS 87 L D +G ++ D + PAS+ K+MTAYVV LK ++ T T+S K S Sbjct: 2 LKDMESGAILFSRGADKRFAPASMAKVMTAYVVLDLLKTRELRRDTTFTVSDAVWRKWNS 61 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S G +++D+ LK LI SAND A +AE + +E+ FV+ MN + ++G+ Sbjct: 62 STGGSTMFLSPGEKLSVDDLLKGLITVSANDAAAVLAEGIDGSEEAFVRRMNKVAADIGM 121 Query: 148 SATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ-YMHYFQIK----GLEIKGKK-- 199 +++HF +G G +A D+ L+ R+ D P Y YF I G+ G+ Sbjct: 122 ASSHFGTPNGWPDGGVTKVSAADLITLADRLIRDHPDGYARYFSIPKLQHGVAPDGRPIV 181 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + GADG+KTG T +G+ + SA + + LI V+ G N R + + L Sbjct: 182 QPNRNPILDRVDGADGLKTGHTREAGYCFLGSAERDGRRLIMVVAGLPSANARREEAQRL 241 Query: 260 LSMGF 264 + GF Sbjct: 242 MDWGF 246 >gi|222475494|ref|YP_002563911.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma marginale str. Florida] gi|222419632|gb|ACM49655.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma marginale str. Florida] Length = 380 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 1/256 (0%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ K P+ + + + V+ E+ D P+S++KLMT Y+VF L + Sbjct: 24 PSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSSMSKLMTLYLVFQHLHAGLIKMD 83 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++S++A + S++ K G + + + + V S ND +A+AE + ++++FV+ Sbjct: 84 DTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVED 143 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 +N+ +K + L+ + F N G GH + RD+ LS RI DFP+Y H F K G Sbjct: 144 INSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNG 203 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +G DG+KTG T +G+ I ASA Q D + V++ L T Sbjct: 204 VTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASA-QKDNRRVFVVVNGLKTETERAYET 262 Query: 258 SLLSMGFYNKTDRKKI 273 L + +N+ + K + Sbjct: 263 KRLLLYAFNRFETKVV 278 >gi|326402423|ref|YP_004282504.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum AIU301] gi|325049284|dbj|BAJ79622.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum AIU301] Length = 422 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG VIA PD PW PASLTKLMTAY+ + + + + +S +A Sbjct: 81 YVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSLKMDQTVPVSVSAWHTG 140 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T+T+D L LI+ S ND AVA+A+++ + FV MN+ +K LGL +T Sbjct: 141 GSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGFVGLMNHEAKALGLKST 200 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ N G+ TTA D+A LS I +PQ++ K K +W F Sbjct: 201 HYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFTF--DKIRQRSWNPVLF 258 Query: 211 --LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G I A+A++ + LIAV+LG +LL G+ Sbjct: 259 HDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTHDIEALLDYGY 314 >gi|148259268|ref|YP_001233395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] gi|146400949|gb|ABQ29476.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Acidiphilium cryptum JF-5] Length = 423 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D +TG VIA PD PW PASLTKLMTAY+ + + + + +S +A Sbjct: 82 YVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSLKMDQTVPVSVSAWHTG 141 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T+T+D L LI+ S ND AVA+A+++ + FV MN+ +K LGL +T Sbjct: 142 GSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGFVGLMNHEAKALGLKST 201 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ N G+ TTA D+A LS I +PQ++ K K +W F Sbjct: 202 HYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFTF--DKIRQRSWNPVLF 259 Query: 211 --LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G I A+A++ + LIAV+LG +LL G+ Sbjct: 260 HDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTHDIEALLDYGY 315 >gi|126642515|ref|YP_001085499.1| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii ATCC 17978] Length = 376 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 16/243 (6%) Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +M AY+ +K K L IT + S ++ S K G +++D L LIV SA Sbjct: 1 MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 60 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS Sbjct: 61 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 120 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234 + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 121 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 180 Query: 235 -----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 + L+ ++LG R +++ L+++ + D I +Q L E+ Sbjct: 181 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIP-------EQKLIAEL 233 Query: 290 PNI 292 P I Sbjct: 234 PVI 236 >gi|56417129|ref|YP_154203.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries] gi|56388361|gb|AAV86948.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries] Length = 380 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 1/256 (0%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ K P+ + + + V+ E+ D P+S++KLMT Y+VF L + Sbjct: 24 PSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSSMSKLMTLYLVFQHLHAGLIKMD 83 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++S++A + S++ K G + + + + V S ND +A+AE + ++++FV+ Sbjct: 84 DTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVED 143 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 +N+ +K + L+ + F N G GH + RD+ LS RI DFP+Y H F K G Sbjct: 144 INSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNG 203 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +G DG+KTG T +G+ I ASA Q D + V++ L T Sbjct: 204 VTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASA-QKDNRRVFVVVNGLKTETERAYET 262 Query: 258 SLLSMGFYNKTDRKKI 273 L + +N+ + K + Sbjct: 263 KRLLLYAFNRFETKVV 278 >gi|53722262|ref|YP_111247.1| peptidase [Burkholderia pseudomallei K96243] gi|52212676|emb|CAH38706.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243] Length = 333 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|23099297|ref|NP_692763.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777526|dbj|BAC13798.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 388 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ + PAS+TK+MT ++ L++ + +S A+ S Sbjct: 42 LMEQDTGTILYDKNAHEQLPPASMTKIMTLLLIMESLEKGDIAKDDVVIVSDKAASMGGS 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G MT+++ LK + V S ND +VA+AE + +E+ FV MN +K L L T F Sbjct: 102 QIFLEAGEEMTVNDLLKGVAVASGNDASVALAEKIAGSEEAFVNKMNEKAKELNLKNTLF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 N G+ + HY++A DMAI++ + +Y ++ + + ++ NTN V Sbjct: 162 QNTTGLPEENHYSSAYDMAIMANELLKHESITEYTSIYEDYLRQGQDNEFWLVNTNKLVR 221 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + GADG+KTG+T + + + A+A + + ++AV++GA RN + LL F++ Sbjct: 222 FYKGADGLKTGYTSEAKYCLTATAKRDNMRVVAVVMGAKSPKERNSMVTELLDYAFHS 279 >gi|269958469|ref|YP_003328256.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str. Israel] gi|269848298|gb|ACZ48942.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str. Israel] Length = 380 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 1/256 (0%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ K P+ + + + V+ E+ D P+S++KLMT Y+VF L + Sbjct: 24 PSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSSMSKLMTLYLVFQHLHAGLIKMD 83 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++S++A + S++ K G + + + + V S ND +A+AE + ++++FV+ Sbjct: 84 DTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVED 143 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 +N +K + L+ + F N G GH + RD+ LS RI DFP+Y H F K G Sbjct: 144 INGLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNG 203 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +G DG+KTG T +G+ I ASA Q D + V++ L T Sbjct: 204 VTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASA-QKDNRRVFVVVNGLKTETERAYET 262 Query: 258 SLLSMGFYNKTDRKKI 273 L + +N+ + K + Sbjct: 263 KRLLLYAFNRFETKVV 278 >gi|312897814|ref|ZP_07757230.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera micronuciformis F0359] gi|310621198|gb|EFQ04742.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera micronuciformis F0359] Length = 277 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 14/239 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ + P+ +PAS TK++T + + L + L PI IS+ A++ PS Sbjct: 39 LIDADTGRILYQVNPNKWVHPASTTKIVT---MLTALDKGADKLDQPIHISQYAADTEPS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V S ND+AVA+AE+L T + MN + LG + THF Sbjct: 96 VLGIAPGDKLTLREAMRGMMVVSGNDVAVAVAETLGGTVGAYADMMNAEAAKLGATHTHF 155 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYPNTN-W 205 +N +G+ HYTTA DMA I ++ +K +P++ + + +K L+ + K TN + Sbjct: 156 VNPNGLTAPKHYTTAVDMAKIAAYGLK-HYPEFKYTVSLPNYTVKYLDGRTKYVETTNRF 214 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GADG+KTG+T A+G +VASA + +L+ + + + R + ++L GF Sbjct: 215 LTSGYKGADGVKTGYTDAAGVCLVASATRNGHTLVVSL---FNDDNRWTDAPAILDYGF 270 >gi|300986937|ref|ZP_07177913.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300407823|gb|EFJ91361.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|307626443|gb|ADN70747.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146] gi|315295235|gb|EFU54570.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] Length = 321 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 15/220 (6%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--------KKGSTMTLDNALKLL 111 MT YVV + + +T+ ++A + N F K+G +++ + + L Sbjct: 1 MTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSVRDLSRGL 58 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A Sbjct: 59 IVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLA 118 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNI 228 +LS I P++ H + K L G N N W + DG+KTG T +GFN+ Sbjct: 119 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWD--KTMNVDGLKTGHTSGAGFNL 176 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +ASA+ G + LIAV++GA R + + LL G N T Sbjct: 177 IASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 216 >gi|167819885|ref|ZP_02451565.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 91] Length = 309 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|76818571|ref|YP_335397.1| peptidase [Burkholderia pseudomallei 1710b] gi|126456879|ref|YP_001075694.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242313141|ref|ZP_04812158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254265595|ref|ZP_04956460.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gi|76583044|gb|ABA52518.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b] gi|126230647|gb|ABN94060.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242136380|gb|EES22783.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254216597|gb|EET05982.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 333 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|167922874|ref|ZP_02509965.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei BCC215] Length = 315 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 52 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 111 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 112 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 171 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 172 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 231 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 232 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 291 Query: 262 MGF 264 GF Sbjct: 292 QGF 294 >gi|167915042|ref|ZP_02502133.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 112] Length = 333 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|218506880|ref|ZP_03504758.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil 5] Length = 247 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 109/197 (55%) Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+ Sbjct: 1 LTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAM 60 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE+L +E F M ++ LG+S T F+NA G+ TTARDM+ L + ++P Sbjct: 61 AETLGGSESGFAWMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPN 120 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 F + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++ V+ Sbjct: 121 EYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVV 180 Query: 244 LGALDRNTRNKVSASLL 260 LG +R+ A LL Sbjct: 181 LGGRTARSRDAKMAGLL 197 >gi|126444942|ref|YP_001062743.1| peptidase [Burkholderia pseudomallei 668] gi|134283712|ref|ZP_01770410.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|167906685|ref|ZP_02493890.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] gi|237510538|ref|ZP_04523253.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346] gi|126224433|gb|ABN87938.1| family S11 unassigned peptidase [Burkholderia pseudomallei 668] gi|134244894|gb|EBA44990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|235002743|gb|EEP52167.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346] Length = 333 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|217418923|ref|ZP_03450430.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226198000|ref|ZP_03793572.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|217398227|gb|EEC38242.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225929876|gb|EEH25891.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] Length = 333 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|167742710|ref|ZP_02415484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 14] gi|167849724|ref|ZP_02475232.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] Length = 310 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|254228127|ref|ZP_04921557.1| beta-lactamase [Vibrio sp. Ex25] gi|151939623|gb|EDN58451.1| beta-lactamase [Vibrio sp. Ex25] Length = 249 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 4/209 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D +TG V+ E NPASLTKLMTAYV + L + IS+NA Sbjct: 41 YVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEINAGNITLDDEVVISRNAWAKN 100 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + ++++L + + L+V+S ND +VAIAE + +E FV MN+ + L L Sbjct: 101 FPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLEL 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + T F N HG+ G Y+T D+A L I D P + G N N + Sbjct: 161 NNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLL 220 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQG 235 + DGMKTG+T +G+++ SA QG Sbjct: 221 RDRSMNVDGMKTGYTSGAGYSLATSATQG 249 >gi|53716694|ref|YP_105744.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|67641067|ref|ZP_00439854.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|124381420|ref|YP_001024168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10229] gi|126447167|ref|YP_001078428.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10247] gi|254200552|ref|ZP_04906917.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|254204580|ref|ZP_04910933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|52422664|gb|AAU46234.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|124289440|gb|ABM98709.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10229] gi|126240021|gb|ABO03133.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10247] gi|147748164|gb|EDK55239.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|147754166|gb|EDK61230.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|238521922|gb|EEP85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] Length = 333 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|319783486|ref|YP_004142962.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169374|gb|ADV12912.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 434 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 7/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 ++D TG V+ D P PAS+ KLMT VVF+ +K + L +S+NA Sbjct: 85 MIDAETGTVLFSKEADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGA 144 Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST K S++ L++ ++ + V++AND + IAE + +E F M ++ +GL Sbjct: 145 PSGTSTMFAKLKSSIRLEDLIQGVTVQAANDGCIVIAEGMSGSEDNFAVQMTERARQIGL 204 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F+N+ G+ G TT R++A L+ + D+P + YF K N N + Sbjct: 205 KTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYFAQKDFTWNKISQRNRNPLL 264 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--Y 265 +GADG+ G + A+GF IV S +IA + G R + + LL G + Sbjct: 265 AMDIGADGLAVGASEAAGFGIVGSLSHNGTRVIAAMSGLASDKERAEEARKLLDWGVRSF 324 Query: 266 NKTD 269 KT+ Sbjct: 325 EKTE 328 >gi|167723745|ref|ZP_02406981.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98] Length = 318 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 298 Query: 262 MGF 264 GF Sbjct: 299 QGF 301 >gi|167828274|ref|ZP_02459745.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9] Length = 266 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 4 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 63 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 64 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 123 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 124 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 183 Query: 208 GTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG T A+G+ +V +A + +IAV+LG R + +LL Sbjct: 184 GADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALLD 243 Query: 262 MGF 264 GF Sbjct: 244 QGF 246 >gi|160946179|ref|ZP_02093390.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270] gi|158447702|gb|EDP24697.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270] Length = 391 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 10/249 (4%) Query: 35 DTNTGHV-IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 D +G + +AEN D P + AS++KLMT Y+V + E K + + IS NAS S+ Sbjct: 41 DAKSGALFVAENI-DEPLSIASISKLMTYYLVKEKIAEGKLKMEDKVKISINASREEGSS 99 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K G +++ + L L+V S ND AVA+AE + ++E KFV MN +K LGL F Sbjct: 100 LNLKAGEQISIKDLLDGLMVVSGNDSAVALAEVVAESESKFVTMMNEKAKELGLQNATFT 159 Query: 154 NAHGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGT 209 NA G+ ++G + RD+ LS I +P+ + Y + LE + K +T VG Sbjct: 160 NASGLTKNGQDNKMSTRDIFTLSKAIIEKYPEVLEYAKTTVLEQPSRNFKKESTIPLVGQ 219 Query: 210 FLGADGMKTGFTCASGFNIVAS-AIQGDQS---LIAVILGALDRNTRNKVSASLLSMGFY 265 G DG+KTG T +G+ +V++ I+ ++ +I+V++GA + R + +L+ Sbjct: 220 VEGVDGLKTGHTDEAGYCLVSTMKIKKGETEFRVISVLMGAKTKADRAQYMKDMLNYAKQ 279 Query: 266 NKTDRKKIN 274 N RK ++ Sbjct: 280 NIETRKIVD 288 >gi|260459469|ref|ZP_05807724.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259035023|gb|EEW36279.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 387 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 ++D +TG V+ D P PAS+ KLMT VVF+ +K + L +S+NA Sbjct: 38 MIDADTGTVLFSKDADKPIQPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGA 97 Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST K S++ L++ ++ + V++AND + IAE + +E F M ++ +GL Sbjct: 98 PSGTSTMFAKLKSSVRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMTERARQIGL 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F+N+ G+ G T+ R++ L+ + ++P + Y+ +K N N + Sbjct: 158 KTSTFVNSTGLPADGQQTSVRELTQLALHLWRNYPDFYRYYSLKDFTWNKISQRNRNPLL 217 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--Y 265 +GADG+ G + ASGF IV S +IA + G + R + + LL G + Sbjct: 218 AMDIGADGLAVGASEASGFGIVGSVSHNGTRVIAALSGLANDKERAEEARKLLDWGVRSF 277 Query: 266 NKTD 269 KT+ Sbjct: 278 EKTE 281 >gi|261409755|ref|YP_003245996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261286218|gb|ACX68189.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 336 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 27/289 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F VI+ ++ +F I K L+ +TG V+ + D P PAS++K+MT Sbjct: 46 FGVILIAVFIARVF----IPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + + +S+ A+E P S +G TL + LI+ SAND AVAI Sbjct: 102 LVLDAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGV------------VQHGHYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ + TARD Sbjct: 162 AEHLGGSEARFVETMNARAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG----TFLGADGMKTGFTCAS 224 A+L+ + P + + L + K+ TN + + G DG KTG+T ++ Sbjct: 222 AMLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTASA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 G+ +A +G LI+V++G D + R + L+ GF DR+ I Sbjct: 282 GYCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGF----DRQGI 326 >gi|319935945|ref|ZP_08010369.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1] gi|319809059|gb|EFW05555.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1] Length = 381 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 18/278 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASL 56 M + ++I ML +FP + AE KL L++ +T V+ ++ PAS Sbjct: 1 MIKKILICLFVMLLCMFPKVVYAEDLKLAPNAASSVLMEASTKQVLYSSHETDKLFPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT ++F + + +T S A+ S ++G M++ + K + + SA Sbjct: 61 TKIMTMILMFEAINKGTLKWDDVLTCSAYAASMGGSQIYLEEGEQMSVSDLFKGISIASA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW- 175 ND V + E + T FV+ MN +K L L+ THFMN G+ HYT A D+ +++ Sbjct: 121 NDACVMVGERIAGTNDGFVKMMNEKAKELNLTNTHFMNPTGLHDDNHYTCALDLGLMASY 180 Query: 176 -------RIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGF 226 R+ Y Y + E +K+ NTN + ++ GADG+KTG+T +G+ Sbjct: 181 LIQIGGDRLFATTSLYDSYIR----ENSAQKFWLVNTNKLLKSYEGADGLKTGYTKEAGY 236 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 IV++A + LIAV++ + RN+ + LL GF Sbjct: 237 CIVSTAKRNGLRLIAVVMKESEPKVRNQEVSQLLDYGF 274 >gi|258590884|emb|CBE67179.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [NC10 bacterium 'Dutch sediment'] Length = 355 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 132/244 (54%), Gaps = 22/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ + +PAS TK+MTA ++ ++ L + IS+ A+ + Sbjct: 96 LMDADTGAILFARHHMERRSPASTTKIMTALLIL-----EEGQLDDKVLISERAAAVSGT 150 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + L + L +++KSAND A+A AE + +E++FV MN + +LG+ T F Sbjct: 151 GLGLRRGQRVVLRDLLWAILLKSANDAALAAAEHVGGSEEQFVARMNAKAASLGMQGTQF 210 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----------GLEIKGKKYP 201 N HG+ HY+TA D+AIL+ R P + Q + G +K + Sbjct: 211 SNPHGLDHQDHYSTAFDLAILA-RQALRNPTFARMVQTREAQVAILTGRNGSVVKRRVIR 269 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-SASLL 260 N +G F GADG+KTG+T +G +VASA +GD LIAV+L ++R V +A+LL Sbjct: 270 THNQLLGQFSGADGVKTGYTSLAGRCLVASATRGDHQLIAVLL----NDSRRWVEAAALL 325 Query: 261 SMGF 264 GF Sbjct: 326 EYGF 329 >gi|862471|gb|AAC36937.1| ORF4 [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 255 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 15/218 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 N W + DG+KTG T +GFN++ASA+ G + Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAGFNLIASAVDGQR 254 >gi|308069547|ref|YP_003871152.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] gi|305858826|gb|ADM70614.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] Length = 420 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 123/243 (50%), Gaps = 23/243 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +L+D +G +I D ASLTK+MTA V + + + +P +K S Sbjct: 65 SLIDVTSGRIIYSTEGDRELRIASLTKIMTAIVAIEHGRLQDRVKVSPTAYAKEGSSL-- 122 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + G M+L+N L L+++S ND A AIAE + TE+ FV MN+ + LGLS TH Sbjct: 123 ---FLQMGEQMSLENMLYGLMLRSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGLSHTH 179 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNW----- 205 F N HG+ GHY++A DMA L T + + F +I E+K PN +W Sbjct: 180 FANPHGLDAEGHYSSANDMARL-----TAYALHNPTFARIVKTELKKAPNPNDSWDYSWH 234 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + + GADG+KTGFT + +V+SA + + L AV L D + N A +L Sbjct: 235 NKNKMLRLYEGADGVKTGFTKKAFRCLVSSATRDGRQLAAVTLN--DGDDWND-HARMLD 291 Query: 262 MGF 264 GF Sbjct: 292 YGF 294 >gi|13470655|ref|NP_102224.1| penicillin binding protein [Mesorhizobium loti MAFF303099] gi|14021397|dbj|BAB48010.1| penicillin binding protein [Mesorhizobium loti MAFF303099] Length = 388 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 5/236 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 ++D +TG V+ D P PAS+ KLMT VVF+ +K + L +S+NA Sbjct: 39 MIDADTGTVLFSKDADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGA 98 Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST K S + L++ ++ + V++AND + IAE + +E F M ++ +GL Sbjct: 99 PSGTSTMFAKLKSAIRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMTERARQIGL 158 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F+N+ G+ G TT R++A L+ + D+P + Y+ +K N N + Sbjct: 159 KTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYYGLKDFTWNKISQKNRNPLL 218 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +GADG+ G + +GF IVAS +I + G + R + + LL G Sbjct: 219 AMDIGADGLAVGASEVAGFGIVASVSHNGTRVIMAMNGLANDKERAEEARKLLDWG 274 >gi|229160966|ref|ZP_04288955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803] gi|228622534|gb|EEK79371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803] Length = 317 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI +N + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 VIDASDGDVIYQNNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEMSEYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ ++ + Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYNLIKDYPEILEVTHLRQSQLAFNNTTVTNTNEM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNENNKSLHIEGMDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSGKAKRFTETNKLM 309 Query: 261 SMGF 264 + GF Sbjct: 310 TYGF 313 >gi|125975657|ref|YP_001039567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|125715882|gb|ABN54374.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] Length = 418 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ E AS TK+MTA V + L + +S A+ S Sbjct: 66 VIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAI-----ENGNLDDKVKVSSRAASIWGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G +TL L ++++S ND A+A+AE + T + FV+ MN+ ++ LGL T F Sbjct: 121 TIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLKNTAF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 HG+ GHY+TA ++A+L+ R P + K I + TN + + G Sbjct: 181 KTPHGLDVEGHYSTAYELAMLT-RYALQNPVFAQIVATKSTTITNRSLYTTNEMLSLYPG 239 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L F N Sbjct: 240 ADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKAILDYAFNN 293 >gi|256003606|ref|ZP_05428595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|255992397|gb|EEU02490.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316939774|gb|ADU73808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 396 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ E AS TK+MTA V + L + +S A+ S Sbjct: 44 VIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAI-----ENGNLDDKVKVSSRAASIWGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G +TL L ++++S ND A+A+AE + T + FV+ MN+ ++ LGL T F Sbjct: 99 TIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLKNTAF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 HG+ GHY+TA ++A+L+ R P + K I + TN + + G Sbjct: 159 KTPHGLDVEGHYSTAYELAMLT-RYALQNPVFAQIVATKSTTITNRSLYTTNEMLSLYPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L F N Sbjct: 218 ADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDYAFNN 271 >gi|169831557|ref|YP_001717539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638401|gb|ACA59907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 376 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 140/278 (50%), Gaps = 30/278 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAE-----TNKLPYYT-----LLDTNTGHVIAENYPDHPWNPA 54 L+I+ A+L P + AE T K P T L+D TGHV+ +PA Sbjct: 11 LLIVVFALLG---PQSASAEPSADSTMKPPRVTADAAVLVDVETGHVLFAKNERQRKDPA 67 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIV 113 SLTK+MTA V + +T+S+ A+ + + + G +TL+N LK ++ Sbjct: 68 SLTKVMTAIVALEAGRPGDV-----VTVSERAARFGRGSVIDLRAGEKITLENLLKAALI 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND +AIAE + FV+ MN ++ LG T FMN HG HY+TA D+A + Sbjct: 123 MSANDSTIAIAEHVAGDYDLFVRWMNLKARQLGAHDTRFMNTHGFTHPNHYSTAADLAEI 182 Query: 174 SWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGT-FLGADGMKTGFTCASGF 226 + R PQ+ + + + + + + NTN + + F G DG+KTG T A+G Sbjct: 183 T-RYALRIPQFAALVRTREITVYWRDSDRKRTIRNTNRLLRSDFEGIDGVKTGTTSAAGH 241 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ASA + + ++AV+L + + R + LL+ GF Sbjct: 242 CLIASATRDGRRVLAVVLHS---DGRYLDARRLLTYGF 276 >gi|49481177|ref|YP_036116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332733|gb|AAT63379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 317 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G D+ R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTEDKTKRFTETNKLM 309 Query: 261 SMGF 264 + F Sbjct: 310 TYAF 313 >gi|90418359|ref|ZP_01226271.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase family [Aurantimonas manganoxydans SI85-9A1] gi|90338031|gb|EAS51682.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase family [Aurantimonas manganoxydans SI85-9A1] Length = 393 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 13/246 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ E D PASL KLMT V+F LK+ + +S++A Sbjct: 39 PTAILVDYGTGRVLYEKDADTEIPPASLAKLMTIAVLFDDLKQGRVQRDDRFVVSEHAWR 98 Query: 89 YPPSNSTFKKGSTMTL--------DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 ++S GSTM L ++ ++ +IV+S ND + +AE L + + F MN Sbjct: 99 TGGASS---GGSTMFLPLNSEVAVEDLIRGIIVQSGNDATIVVAEGLSGSVEAFAGRMNA 155 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ +GL+ +HF N HG+ + + RD+A L+ + +FP+ F + G K Sbjct: 156 EAEKIGLTHSHFTNPHGLPDPEQHVSVRDLARLATYLIREFPEDYPIFAEESFTYNGIKQ 215 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + LGADG+KTG T A+G+ +VASA + + ++ + G R + L+ Sbjct: 216 QNRNPLLD--LGADGLKTGHTSAAGYGLVASAERDGRRIVLAMSGMGSTAERASEARRLM 273 Query: 261 SMGFYN 266 + G + Sbjct: 274 NFGLQD 279 >gi|78043555|ref|YP_360781.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77995670|gb|ABB14569.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 377 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 3/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E AS+TKLMT + +++ K L + +S+ A+ S Sbjct: 35 LMEPYTGKILYEKEIHKKLPIASVTKLMTLLLAIEAVEKGKVNLEDIVKVSEEAASMGGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + + L + V SAND VA+AE++ E+ FV+ MN ++ LG++ THF Sbjct: 95 QLYMYAGEEFSFKDLLMAVAVASANDACVAVAETVAGNEQAFVEEMNKKAEELGMTNTHF 154 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTF 210 +N++G HY+T D+AIL R P ++ QIK ++G + NTN + + Sbjct: 155 VNSYGFDDPNHYSTCYDLAIL-LREAIKHPLFLELSQIKEFTLRGGETRRFNTNKLLWYY 213 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G D KTG+T +G+ + ++A + D LIAV+LG + S L + G+ N Sbjct: 214 RGVDAGKTGWTEEAGYCLASTASRDDLRLIAVVLGCPVKKGHFTESIKLYNYGYAN 269 >gi|281416665|ref|ZP_06247685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|281408067|gb|EFB38325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 396 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ E AS TK+MTA V + L + +S A+ S Sbjct: 44 VIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAI-----ENGNLDDKVKVSSRAASIWGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G +TL L ++++S ND A+A+AE + T + FV+ MN+ ++ LGL T F Sbjct: 99 TIKLKPGEELTLRELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLKNTAF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 HG+ GHY+TA ++A+L+ R P + K I + TN + + G Sbjct: 159 KTPHGLDVEGHYSTAYELAMLT-RYALQNPVFAQIVATKSTTITNRSLYTTNEMLSLYPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 ADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L F N Sbjct: 218 ADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDYAFNN 271 >gi|323702537|ref|ZP_08114200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323532511|gb|EGB22387.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 405 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 3/234 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+G V+ + PD AS+TKLMT ++ + K LT + S++A S Sbjct: 62 LMDYNSGQVLFQKDPDTRRPMASVTKLMTMLLICEAEAQGKIKLTDKVVASEHACSMGGS 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G +T+ L + SAND +VA+AE + +E+ FV MN ++ +GL THF Sbjct: 122 QIFLEPGEQLTIKEMLISIATGSANDASVAMAEQIAGSEEAFVAMMNEKAQAMGLKNTHF 181 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 N G+ HYT+ARDMA + R +P + +I +++G ++ NTN + + Sbjct: 182 SNPTGLPVENHYTSARDMAKV-LRECLRYPVFREVSKIYEYDLRGGEFKLWNTNKLLKWY 240 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G D KTG+T + F + ASA + LI+V+LG T + + + + GF Sbjct: 241 PGTDAGKTGWTNEAKFCLAASAKRDGLRLISVVLGCPMPKTHFQETMKIFNYGF 294 >gi|296284125|ref|ZP_06862123.1| D-alanyl-D-alanine carboxypeptidase [Citromicrobium bathyomarinum JL354] Length = 378 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 23/278 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M FL +++A+ + + S + P ++D ++G + D + PAS+TK+M Sbjct: 1 MVGFLAALSLALPTGLSAQPSPPTPEQAPIAYMIDLSSGQTLYARDIDRRFVPASITKVM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF----KKGSTMTLDNALK-----LL 111 T V F L + K + P +++F +KGST+ L + LL Sbjct: 61 TTLVAFDMLADGKL---------RRDQRMPYRDASFDEWHRKGSTLFLPRRARPSVNELL 111 Query: 112 I---VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTA 167 I SAND AV +AE + K+ MN T++++G+ ++F +G GH +T+A Sbjct: 112 IGITTVSANDAAVVLAEGASGSVDKWTARMNATARSIGMHDSYFGTPNGWPDEGHTFTSA 171 Query: 168 RDMAILSWRIKTDFPQYMHYFQIK-GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 RD+ +L+ RI P + Y+ + GL+ G N + G GADG+KTG+T +G+ Sbjct: 172 RDLGLLAKRIIRGHPDFFDYYYGRTGLKAYGIAQDNHDPITGRVDGADGLKTGYTDQAGY 231 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + +A + + L+ V+ GA RN+ + + GF Sbjct: 232 GFLGTAERDGRRLVMVVAGADRGQVRNRAARDFIEWGF 269 >gi|329923410|ref|ZP_08278892.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328941302|gb|EGG37596.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 336 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 27/289 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F VI+ ++ +F I K L+ +TG V+ + D P PAS++K+MT Sbjct: 46 FGVILIGVFIARVF----IPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + + +S+ A+E P S +G TL + LI+ SAND AVAI Sbjct: 102 LVLEAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGV------------VQHGHYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ + TARD Sbjct: 162 AEHLGGSEARFVESMNIRAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG----TFLGADGMKTGFTCAS 224 A+L+ + P + + L + K+ TN + + G DG KTG+T ++ Sbjct: 222 AMLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTSSA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 G+ +A +G LI+V++G D + R + L+ GF DR+ I Sbjct: 282 GYCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGF----DRQGI 326 >gi|255019743|ref|ZP_05291820.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254970811|gb|EET28296.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 388 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 4/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G +IA + PASLTKLMTAY+ + + + +S A + Sbjct: 47 YVLMDYDSGQIIAAKEENLHRAPASLTKLMTAYLTYQAMANGSLRPDETVNVSNTAWKTG 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +T+D L L++ S ND AVA+AE++ ++ FV MN+ ++ L L T Sbjct: 107 GSRMFIQPGLPVTVDQLLHGLLIDSGNDAAVALAETVGGSQAGFVTLMNDAARQLHLDNT 166 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ N +G+ YTTA D+A LS + +PQ + + K K +W F Sbjct: 167 HYSNVNGLPDSNLYTTALDVAKLSRALIQQYPQVIAITRQKSYTY--NKITQRSWNPVLF 224 Query: 211 L--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T SG+ I A+A + + LIAV+LG + SLL+ G+ Sbjct: 225 RDPSVDGLKTGLTDESGYCIDATAQRNGRRLIAVVLGGPSWSGSTNAVESLLNYGY 280 >gi|323484906|ref|ZP_08090261.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum WAL-14163] gi|323693651|ref|ZP_08107850.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] gi|323401787|gb|EGA94130.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum WAL-14163] gi|323502265|gb|EGB18128.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] Length = 404 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D NPAS+TK+MT ++F LK K L + S +A Sbjct: 49 PDAILIEASTGTVIYEKNADEARNPASVTKIMTLLLIFDALKSGKIHLDDEVVTSAHAKS 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +++ S ND +VA+AE + E FV+ MN +K LG+ Sbjct: 109 MGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEYIGGDEATFVKMMNERAKGLGME 168 Query: 149 ATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKG 197 +F + G+ H +ARD+A+++ + T +P+ +Y I +G + G Sbjct: 169 NANFEDCCGLTDSTTHAMSARDIALMTKELITKYPEIFNYSTIWMENITHVTKQGTKEFG 228 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + T G+KTG T + + + A+A + LIAVIL A D R + Sbjct: 229 LSNTNKLLKMATNFEVTGLKTGSTSLAKYCLSATARKDGVELIAVILAAPDFKARFGDAL 288 Query: 258 SLLSMGFYN 266 +LL+ G+ N Sbjct: 289 TLLNYGYAN 297 >gi|304321771|ref|YP_003855414.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] gi|303300673|gb|ADM10272.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] Length = 387 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 1/240 (0%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T P ++D TG V+ E P PAS++KLMT V + + TP ++S+ Sbjct: 32 TTDAPTALIMDGETGDVLFEKNARTPIPPASMSKLMTVAVALDMIATGELSADTPFSVSE 91 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S G+ + L LK +I S ND A+ +AE++ ++ F MN + Sbjct: 92 RAWRTGGSKMFVLVGTEIPLKELLKGIITVSGNDAAIVVAENIAGSDAAFADIMNRKAAR 151 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 GL+ +HF N HG+ TA D+A L+ I +P Y + F + + N N Sbjct: 152 WGLTGSHFANPHGIPDPEQRMTALDIAKLARHIWDSYPDYRYLFSLPEMTWSDITQRNRN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G GADGMKTG T +GF +V SA + V+ G R + LL F Sbjct: 212 PLLG-LEGADGMKTGHTEEAGFGVVGSASRDGVRRYIVVAGLPTSEARASTARRLLDTAF 270 >gi|218666016|ref|YP_002426742.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518229|gb|ACK78815.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 323 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 23 AETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 AET+ LP Y L++ +TG +IA P+ AS+TKLMT Y++F + L Sbjct: 52 AETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITKLMTLYLLFKDIDSGHLQLN 111 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + A + S+ G T+ + + V S ND AV A + + FV Sbjct: 112 QHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGNDAAVETAHLVAGSVPAFVAE 171 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN T++ +G+ +T F + G+ + + D+A+L+ + T FPQ+M +F+ + G Sbjct: 172 MNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLMTQFPQFMPFFRHENFTYAG 231 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 PN N VG GMK+G+T A+G +VA+ Q SLIAVILG Sbjct: 232 ITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGISLIAVILG 279 >gi|85715534|ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85697729|gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 413 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 5/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ +G V+ E D P+S+ KLMTA VVF+ +++ + LT IS+N Sbjct: 54 PTAILVEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYVISENTWR 113 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST S +++ + L I++S ND +A+AE + E F + M ++ Sbjct: 114 KGGAPSGGSTMFAAINSRVSVQDLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMTARAR 173 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL+ + F N++G+ + T R++A+L+ I +P + F + + N Sbjct: 174 ELGLTRSTFANSNGLPHPDNKMTVRELAVLARHIILTYPDFYKLFGEREFTWNKIRQLNR 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG+KTG+T G+ +V S +Q LI V+ G + R + LL G Sbjct: 234 NALLTAMDGADGLKTGYTKEGGYGMVGSVVQNGTRLIVVVNGLESADDRATAAKKLLEWG 293 Query: 264 FYN 266 F N Sbjct: 294 FRN 296 >gi|222148588|ref|YP_002549545.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] gi|221735574|gb|ACM36537.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] Length = 411 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 5/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L++ TG V+ E D P+ ASL+K+M A VV LK + L+ +S+ A Sbjct: 63 LIEAETGSVLFEKNSDQPFTSASLSKMMVAEVVLDALKSGRLTLSQDFPVSEFAWRTGGA 122 Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P +T S + ++ LK ++V+ AND + +AE + +E+ FV+ MN + LGL Sbjct: 123 PSRTATMFAAVRSRVPVEALLKGVMVQMANDACLILAEGMAGSEQGFVKLMNERAAALGL 182 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF NA G+ G+ + RDM L+ +K+++P + + E N N + Sbjct: 183 KDSHFANATGLPDPGNKVSLRDMITLAQALKSNYPDFYALYAQPDFEWNKIFQRNRNRLL 242 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G G DG+ GF G++IVASA Q L + G+ +R + +A L+ GF Sbjct: 243 GQSPGVDGLAAGFADGEGYSIVASAQQNGVRLYLGLAGSESDKSRQEDAAKALAWGFSAF 302 Query: 268 TDRK 271 R+ Sbjct: 303 EKRR 306 >gi|87199959|ref|YP_497216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium aromaticivorans DSM 12444] gi|87135640|gb|ABD26382.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium aromaticivorans DSM 12444] Length = 391 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 134/291 (46%), Gaps = 37/291 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL------------PYYTLLDTNTGHVIAENYPD 48 MR V +A ++ P + A L P L+D+ +G + Sbjct: 1 MRLKFVAVAAGLIVGAMPVQAAAPEVGLDAAMTSLPRIDAPIALLVDSGSGRTLYARDVH 60 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK----GSTM-- 102 + PAS+TK+MT+YV F +++ K L I+I TF+K GSTM Sbjct: 61 RRFVPASITKIMTSYVAFDLVRKGKLRLDQRISIRPE---------TFRKWKNVGSTMFL 111 Query: 103 ------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 T+ ++ ++ SAND V +AE + F + MN + LG+ +HF + Sbjct: 112 PAEAQPTVAELIEGIVTVSANDACVVLAEGAVGSVPAFTRLMNEAALQLGMRDSHFNTPN 171 Query: 157 GVVQHGH-YTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 G + G Y TA D+A LS + T FP Y ++ + G PN N G GAD Sbjct: 172 GWMDEGQTYVTADDLAKLSGALMTRFPDLYKRFYGHATMTWNGITQPNHNPLYGHTEGAD 231 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSASLLSMGF 264 G+KTGFT +G+ V SA +G + LI ++LG DR R S +L+ GF Sbjct: 232 GVKTGFTNEAGYGFVGSAERGGRRLI-MVLGGYDRPIDRTNQSRALIEWGF 281 >gi|198284088|ref|YP_002220409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248609|gb|ACH84202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 317 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 23 AETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 AET+ LP Y L++ +TG +IA P+ AS+TKLMT Y++F + L Sbjct: 46 AETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITKLMTLYLLFKDIDSGHLQLN 105 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + A + S+ G T+ + + V S ND AV A + + FV Sbjct: 106 QHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGNDAAVETAHLVAGSVPAFVAE 165 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN T++ +G+ +T F + G+ + + D+A+L+ + T FPQ+M +F+ + G Sbjct: 166 MNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLMTQFPQFMPFFRHENFTYAG 225 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 PN N VG GMK+G+T A+G +VA+ Q SLIAVILG Sbjct: 226 ITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGISLIAVILG 273 >gi|83311550|ref|YP_421814.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82946391|dbj|BAE51255.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 388 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 4/236 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 ++D +G V+ E D P+S++KLMT ++VF LK + + +S+ A Y Sbjct: 39 IIDYASGQVLMEKNADELMVPSSMSKLMTVFMVFDKLKTGAWKPSDRLPVSETAWKRHYK 98 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ST T++ LK ++++S ND +AE+ +E+ F + ++ +GL+ Sbjct: 99 SEGSLMFLPVNSTATVEELLKGVVIQSGNDACSVLAEAHSGSEEAFAEEETRRARQIGLT 158 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + F NA G + GH TARD+++L+ + DFP+Y F G K N N + Sbjct: 159 RSVFKNASGWPEPGHLMTARDLSVLARHLIADFPEYYPLFSQMEFVFNGIKQGNRNPLLY 218 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GADG+KTG T A+G+ + AS +G++ +I ++ G R + S L F Sbjct: 219 NTPGADGLKTGHTEAAGYGLTASIKRGNRRIIMILNGMSSMKERAEESRRLTEWAF 274 >gi|91763271|ref|ZP_01265235.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1002] gi|91717684|gb|EAS84335.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1002] Length = 393 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 8/242 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L D +G ++ E D PAS+TK+MTA + F ++ L +S+NA S Sbjct: 42 LQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEKFLVSENAWRLSSA 101 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G ++++N LK +I+ S ND VA+AE + TE +F M +K +G++ Sbjct: 102 GYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAVMMTAKAKEIGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTN 204 T+F N+ G+ + +T RD+ ++S + +FP+ YF K G N N Sbjct: 162 TNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWNRTGGDPITQGNRN 221 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + LGADG+KTG+ +++ +S + + LIAV G +N R++ SA LL+ G Sbjct: 222 PLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKNDRSRESAKLLTWGL 281 Query: 265 YN 266 N Sbjct: 282 TN 283 >gi|71083689|ref|YP_266409.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1062] gi|71062802|gb|AAZ21805.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1062] Length = 383 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 8/242 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L D +G ++ E D PAS+TK+MTA + F ++ L +S+NA S Sbjct: 32 LQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEKFLVSENAWRLSSA 91 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G ++++N LK +I+ S ND VA+AE + TE +F M +K +G++ Sbjct: 92 GYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAVMMTAKAKEIGMNN 151 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTN 204 T+F N+ G+ + +T RD+ ++S + +FP+ YF K G N N Sbjct: 152 TNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWNRTGGDPITQGNRN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + LGADG+KTG+ +++ +S + + LIAV G +N R++ SA LL+ G Sbjct: 212 PLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKNDRSRESAKLLTWGL 271 Query: 265 YN 266 N Sbjct: 272 TN 273 >gi|15676773|ref|NP_273918.1| penicillin-binding protein [Neisseria meningitidis MC58] gi|7226115|gb|AAF41288.1| penicillin-binding protein [Neisseria meningitidis MC58] gi|316985771|gb|EFV64715.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis H44/76] gi|325139970|gb|EGC62499.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis CU385] gi|325200438|gb|ADY95893.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis H44/76] Length = 389 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|325289983|ref|YP_004266164.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] gi|324965384|gb|ADY56163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] Length = 389 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ E PAS+TKLMT + L+ K L +T S+ A S Sbjct: 43 LIDASSGKVLYEKDAHKRLAPASVTKLMTLLIAAEALESGKVNLKDTVTASERACSMGGS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++L+ L + V SAND VA+AE + + ++FV MN +K LGL T+F Sbjct: 103 QIYLEVGEKLSLEEMLISIAVGSANDACVAVAEHINGSLEEFVHQMNEKAKKLGLVDTNF 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTF 210 +N +G+ GHYT+A D+AI++ + +P IK +++G K+ NTN + + Sbjct: 163 INDNGLPAEGHYTSAYDLAIIA-KESLKYPLISKLTSIKEYDLRGGKFKLYNTNKLLWWY 221 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 G G+KTG+T + + + ++ + LI V++ + S L + GF N + + Sbjct: 222 EGTSGLKTGWTQEAKYCLASTVERNGLKLICVVMAVPEVRGHFAESMKLYNYGFANYSYK 281 Query: 271 K 271 K Sbjct: 282 K 282 >gi|167400236|ref|ZP_02305749.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167050185|gb|EDR61593.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 231 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 42 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + + + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 102 NPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 LGLS THFM HG+ G Y+TARDMA+L + D P+ Sbjct: 162 LGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPE 200 >gi|108807033|ref|YP_650949.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua] gi|108778946|gb|ABG13004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua] Length = 232 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T+ K+A + Sbjct: 43 YVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATG 102 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G + + + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 LGLS THFM HG+ G Y+TARDMA+L + D P+ Sbjct: 163 LGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPE 201 >gi|115524870|ref|YP_781781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] gi|115518817|gb|ABJ06801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] Length = 418 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 5/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ ++G V+ E D P+S+ KLMT VF L++ LT +S+N+ Sbjct: 59 PTAILIEASSGSVLFEKNADELRAPSSMMKLMTVEYVFHALQQGDIKLTDEFKVSENSWR 118 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST + S ++++N L+ I++S ND + +AE L E F + + ++ Sbjct: 119 KGGAPAGGSTMFAEIHSRVSVENLLRGAIIQSGNDSCMVLAEGLAGGESAFAEKLTQRAR 178 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LGL + F N++G+ G+ + R++ L+ + +P Y F + + N Sbjct: 179 ELGLPRSTFANSNGLPDPGNKMSVRELGKLARHLILTYPDYYKIFGEREFTWNKIRQQNR 238 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG+KTGFT G+ +V SA Q LI V+ G D + R + + +L G Sbjct: 239 NPLLTMLEGADGLKTGFTKDGGYGMVGSAEQNGMRLIVVVNGLEDADDRAQEAKKILEWG 298 Query: 264 FYN 266 F N Sbjct: 299 FRN 301 >gi|229096494|ref|ZP_04227465.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29] gi|229115468|ref|ZP_04244874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3] gi|228667881|gb|EEL23317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3] gi|228686700|gb|EEL40607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29] Length = 317 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI ++ + + PAS++K+MTAY++ + K P+ +S+ A++ + Sbjct: 70 IIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYTF 313 >gi|260888386|ref|ZP_05899649.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|260861922|gb|EEX76422.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 354 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 21/242 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E D PAS+TK+MT + + A+ TP + P Sbjct: 112 LMNARTGEVLYEKNGDKREYPASMTKMMTCILSVESGRADLAVTITPFAADVETTRVRP- 170 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G L + + +++ S N A+AIAE+L +E +F MN ++ +G THF Sbjct: 171 ------GEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFHTHF 224 Query: 153 MNAHGVVQHGHYTTARDMAILS---------WRIKTDFPQYMHYFQIKGLEIKGKKY-PN 202 +N +G+ HY+TA D+A+++ +I ++Y Q G K Y N Sbjct: 225 VNPNGMPDANHYSTAHDIALIAAYGLRNPEFRKIVGTKASTIYYLQPAGY----KTYCEN 280 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A+LL Sbjct: 281 TNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALLDY 340 Query: 263 GF 264 GF Sbjct: 341 GF 342 >gi|126729339|ref|ZP_01745153.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37] gi|126710329|gb|EBA09381.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37] Length = 393 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 5/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ D PAS++KLMT Y+ F +++ + L + +S++A Y S Sbjct: 33 VIDVTTGTVLLAKNADEAVPPASMSKLMTLYITFEAIRDGRLSLDERLPVSEHAMSYTGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--TEKKFVQHMNNTSKNLGLSAT 150 + +++ L+ +IV S ND +AE+L TE F + M + LG++ + Sbjct: 93 TMFLNTKDRIRVEDLLRGIIVLSGNDACAVLAEALSPDGTEAGFARLMTQRAHQLGMTNS 152 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAV 207 F NA G GH + RD+ +L+ I DFP++ F K E G+ N N + Sbjct: 153 TFKNASGWPADGHVMSMRDLTLLALHIIQDFPEFYPMFGEKKFEFDGRAPSNVNNRNPLL 212 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GADG+KTG T +G+ +V SA + +I + G R + S ++++ F Sbjct: 213 SLNIGADGLKTGHTQEAGYGLVGSAKNDQRRIIFAMTGLATAGERAEQSEAIVNWAF 269 >gi|229102587|ref|ZP_04233291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28] gi|228680814|gb|EEL34987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28] Length = 317 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI ++ + + PAS++K+MTAY++ + K P+ +S+ A++ + Sbjct: 70 IIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYTF 313 >gi|291543602|emb|CBL16711.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13] Length = 376 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 3/236 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LL+ TG ++ E ++ KLMT + L+ T +T S A+ Sbjct: 34 YALLEARTGQLLLEENSSESLPMGTMAKLMTMLLTAEALESGALSENTAVTASPAANAQK 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ G MT+ + L+ +I+ +AND AVA+AE++ TE++FV MN LGL +T Sbjct: 94 GASIWLMPGEKMTVGDLLRGMIIGNANDAAVALAEAVSGTEEQFVMDMNARGFELGLRST 153 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 F A G+ + G TTA D+ L ++ T++P Y ++G++ N N V Sbjct: 154 VFTCASGLSEEGQVTTAADLGRLCCKL-TEYPVLTPYMTTWRTFLRGEQTELVNENTLVR 212 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ G GMK G +G+ + A+A +GD +AV+LG + R ++ +LLS GF Sbjct: 213 SYDGLLGMKAGHGERTGYTLAAAAQRGDGIYVAVVLGCQEDADRFSIAKTLLSKGF 268 >gi|325137739|gb|EGC60314.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ES14902] Length = 389 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|332981601|ref|YP_004463042.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699279|gb|AEE96220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 439 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 129/256 (50%), Gaps = 22/256 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG+ + PD PAS+TK++TA + ++ L +TI + AS P+ Sbjct: 54 LIDAKTGNALYSINPDQKAYPASITKILTAAIAL-----EQGNLKDVVTIDEEASLGIPA 108 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ KG TL+ L L++ S ND AVAIA+ + T +FV MN +K G Sbjct: 109 GSSAIVMDKGEQFTLEQLLYGLMLISGNDAAVAIAKHISGTTDEFVNLMNQKAKEWGAKN 168 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH------YFQI-KGLEIKGKKYPN 202 +HF N HG HYTTA DMA+++ R P++ Y I K L +++ N Sbjct: 169 SHFANPHGFHNDNHYTTAYDMAMIA-RHAMTIPKFRDIVSTTLYLDIPKTLRGDQRRWDN 227 Query: 203 TNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N+ V + GA G+KTG+T + +VASA LIAV++G + K +A Sbjct: 228 INFFVQPNSKYYYKGATGIKTGYTNQAHHTLVASAQHNGTELIAVLMGEPSKPVAWKDAA 287 Query: 258 SLLSMGFYNKTDRKKI 273 +L+ GF N RK I Sbjct: 288 ALMDYGF-NAFARKII 302 >gi|163868321|ref|YP_001609530.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161017977|emb|CAK01535.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 387 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 LLD NT ++ E + PASL KLMTA VVF LKE T +S+NA Sbjct: 35 LLDDNTETILYEKQECTSFFPASLVKLMTAEVVFHQLKEGLLKNTQKFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T + + + L+ LI+ + ND A+ +AE + E F Q MN +K +GL Sbjct: 95 PSGTTTMFAKIKTEINISDLLRGLIIVNGNDAAIILAEGISGDEDHFAQLMNQRAKIIGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HF+NA G+ + G + TARDM IL+ I ++P Y ++ N N + Sbjct: 155 SQSHFVNATGLPEEGQFVTARDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPLI 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 +G +G +G++ GF++VA+ + + L I G D Sbjct: 215 FKEIGVEGFGSGYSEKEGFSMVATIYKNHRRLFLAINGLQD 255 >gi|198284618|ref|YP_002220939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249139|gb|ACH84732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 415 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A S Sbjct: 76 LLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHAQGS 135 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +T+ L++ ND AVAIA+++ + FV MN+ + +GL THF Sbjct: 136 RMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQHTHF 195 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ Q G +TA D+A LS R+ +P H Q+ G ++ T + G Sbjct: 196 TNPDGLPQPGQTSTALDIARLSKRLIQAYP---HVLQVAG-KVSYTYNHITQYNYNPLAG 251 Query: 213 AD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNK 267 + G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+ + Sbjct: 252 QENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQN 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 K ++ + S EV E TT+ +++ Q + + Sbjct: 312 LPLYKAGQVVAQIRHVDWSPEV----VEGVTTRAVVVSEPKQQQGVR 354 >gi|330838298|ref|YP_004412878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|329746062|gb|AEB99418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 379 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 21/242 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E D PAS+TK+MT + + A+ TP + P Sbjct: 137 LMNARTGEVLYEKNGDKREYPASMTKMMTCILSVESGRADLAVTITPFAADVETTRVRP- 195 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G L + + +++ S N A+AIAE+L +E +F MN ++ +G THF Sbjct: 196 ------GEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFHTHF 249 Query: 153 MNAHGVVQHGHYTTARDMAILS---------WRIKTDFPQYMHYFQIKGLEIKGKKY-PN 202 +N +G+ HY+TA D+A+++ +I ++Y Q G K Y N Sbjct: 250 VNPNGMPDANHYSTAHDIALIAAYGLRNPEFRKIVGTKASTIYYLQPAGY----KTYCEN 305 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A+LL Sbjct: 306 TNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALLDY 365 Query: 263 GF 264 GF Sbjct: 366 GF 367 >gi|47568352|ref|ZP_00239054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47555045|gb|EAL13394.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 317 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G VI + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDVIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQESDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|325135913|gb|EGC58523.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M0579] Length = 389 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++A+ LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILAITLGSESAETRASDNSKLL 278 >gi|331270026|ref|YP_004396518.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] gi|329126576|gb|AEB76521.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] Length = 412 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 16/223 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG V+ D + PAS TK+MTA + K L +T+ KNA S Sbjct: 38 LMDKNTGQVLYSKNLDTQYPPASTTKIMTALLTLENCK-----LDDVVTVGKNAVNVDGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T+ + L L+++SAND AVA++E + + K+FV MN +K LG T+F Sbjct: 93 KVYLFEGEKLTVKDLLYALLLQSANDSAVALSEHVAGSTKEFVNLMNKKAKELGCKNTNF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIK--TDFPQY----MHYFQIKGLEIKGKKYPNTNWA 206 +N HG+ H TTARD+ ++ + +F Q M+Y E K + N + Sbjct: 153 VNPHGLYDDKHRTTARDLGLILRELSKHEEFKQIATTSMYYINPTNKETKKRPIWNKDKL 212 Query: 207 VGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G +G KTG+T S + VA+A + ++SLIAV+L Sbjct: 213 IQKNSKCYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAVLL 255 >gi|15615440|ref|NP_243743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus halodurans C-125] gi|10175498|dbj|BAB06596.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus halodurans C-125] Length = 395 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 30/316 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNPASL 56 F V + ++ +N F+S ET ++ L+D +G V+ + D PAS+ Sbjct: 14 FFVSLQFSVQTNASAFVSEGETLNDAHFHLNSESVLLMDQLSGQVLYSEHGDKKMYPASI 73 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++TA + ++ L +T+SK A+E + +G +TL ++ L++ S Sbjct: 74 TKIITALIAI-----EEGDLDDIVTVSKTATEVIGTRVYLVEGEEVTLRKLVQGLMINSG 128 Query: 117 NDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AIAE E+ F + MN +G+ THF N HG+ HYTTA DMA+++ Sbjct: 129 NDAGTAIAEHFDGNEEAFAERMNRFVQVKIGVENTHFTNPHGLFDKEHYTTAYDMAMIT- 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVAS 231 + + ++ K LE G+ + T + + + G G+K G+ SG+ +V + Sbjct: 188 KYAMENEKFRDVASTKELEWIGEGWETTIYNHHRLLWDYPGTTGVKNGYVSQSGYTLVTT 247 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-KTDRKKIN-----------YIIKD 279 A + DQ LIAV L A + + +LL GF + KT++ K + KD Sbjct: 248 AERDDQQLIAVTLNAPGASFSYNDTMTLLDYGFEHFKTEKIKAGERFVDSDGKEYELAKD 307 Query: 280 FYQQNLSNEVPNISEE 295 FY +E+ IS E Sbjct: 308 FYFSIPEDELFGISLE 323 >gi|218666161|ref|YP_002427291.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518374|gb|ACK78960.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 389 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 136/288 (47%), Gaps = 13/288 (4%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A Sbjct: 49 VLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHAQG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + +T+ L++ ND AVAIA+++ + FV MN+ + +GL TH Sbjct: 109 SRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQHTH 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F N G+ Q G +TA D+A LS R+ +P H Q+ G ++ T + Sbjct: 169 FTNPDGLPQPGQTSTALDIARLSKRLIQAYP---HVLQVAG-KVSYTYNHITQYNYNPLA 224 Query: 212 GAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YN 266 G + G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+ + Sbjct: 225 GQENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQ 284 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 K ++ + S EV E TT+ +++ Q + + Sbjct: 285 NLPLYKAGQVVAQIRHVDWSPEV----VEGVTTRAVVVSEPKQQQGVR 328 >gi|332186127|ref|ZP_08387873.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas sp. S17] gi|332013942|gb|EGI56001.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas sp. S17] Length = 390 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 125/254 (49%), Gaps = 23/254 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--A 86 P + D ++G ++ + D PAS+ K+MT YV F +K+ + L +T+ A Sbjct: 33 PVAFMKDLSSGAILFQRDADRRMPPASMAKMMTVYVAFDLIKKGQLKLDDMVTVQPETWA 92 Query: 87 SEYPPSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + P + GSTM L N L ++ S ND V +AE + TE+ FV+ M Sbjct: 93 KWHGP-----QAGSTMFLSPNEQVSVANLLYGIVTLSGNDACVVLAEHIAGTEQNFVERM 147 Query: 139 NNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ-YMHYFQIK----G 192 N T+K +GL+ +HF ++G G Y TARD+A L+ DFP+ Y ++ + G Sbjct: 148 NRTAKQIGLANSHFGTSNGWPDGGVTYVTARDLADLAEHTIQDFPKLYKQFYSRRDFTWG 207 Query: 193 LEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + G N + +G GADG+KTG T +G+ SA Q + L+ V+ G N Sbjct: 208 KTMGGNAITQANRDPLLGRVAGADGLKTGHTEEAGYGFTGSAEQNGRRLVMVMAGLTSSN 267 Query: 251 TRNKVSASLLSMGF 264 R + S ++ GF Sbjct: 268 ARAEESVKFMNWGF 281 >gi|326405324|ref|YP_004285406.1| putative peptidase S11 [Acidiphilium multivorum AIU301] gi|325052186|dbj|BAJ82524.1| putative peptidase S11 [Acidiphilium multivorum AIU301] Length = 453 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 1/213 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D TG +++E+ + PASLTKLMT + F L + TP+ +S A+ Sbjct: 72 WIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHGRLNANTPLPVSPAAASVQ 131 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 P G T+T+ A+ + SAND A A+ + L ++ M + LG+ Sbjct: 132 PVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSIRRVAAEMTARAHALGMER 191 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 + F N G+ T A DMAIL+ + D+PQY + F + +G+ PN + + Sbjct: 192 SEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVPSFRFEGRTIPNIDGMLKR 251 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + GA GMKTG+T + FN+V +A++ LI V Sbjct: 252 YNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGV 284 >gi|148261820|ref|YP_001235947.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] gi|146403501|gb|ABQ32028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] Length = 453 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 1/213 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D TG +++E+ + PASLTKLMT + F L + TP+ +S A+ Sbjct: 72 WIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHGRLNANTPLPVSPAAASVQ 131 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 P G T+T+ A+ + SAND A A+ + L ++ M + LG+ Sbjct: 132 PVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSIRRVAAEMTARAHALGMER 191 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 + F N G+ T A DMAIL+ + D+PQY + F + +G+ PN + + Sbjct: 192 SEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVPSFRFEGRTIPNIDGMLKR 251 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + GA GMKTG+T + FN+V +A++ LI V Sbjct: 252 YNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGV 284 >gi|154498460|ref|ZP_02036838.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC 29799] gi|150272528|gb|EDM99713.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 30/316 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPA 54 R F +++ +A++ + S A N + Y L+DT G ++ E+ PA Sbjct: 5 RVFSLVLTLALICAVLAPFSTAAANSVDDYVVNARSAILVDTTYGEILYEHNSHERTYPA 64 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111 S+TK+MT + + + L IT+S N ++ S K G +TL + L Sbjct: 65 SITKVMTGLLTIEAIDRGELSLDQQITVSSNVNDGMMSGASTQNLKSGEVLTLKDVLACA 124 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAN+ +AE++ + FV+ MN + LG THFMN HG+ HYTTA D+ Sbjct: 125 LIPSANEACNVLAETVAGSIDAFVELMNQRAAELGCEDTHFMNPHGLHDENHYTTAYDIY 184 Query: 172 I-----LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-------TFLGADGMKTG 219 + + I + M+Y + + + +TN + T+ G+KTG Sbjct: 185 LFCNEAMKHDIFRELVTSMNYTVPATNMSEERTFWDTNALITSWKYKGYTYEYCTGIKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK-INYIIK 278 +T +G+ + ++A +GD+SLIAV+ G + + S G+ + ++ KK + + Sbjct: 245 YTPEAGYCLASAATKGDRSLIAVVTGC------ERTPGATGSEGYTHFSESKKLLEWGFS 298 Query: 279 DF-YQQNLSNEVPNIS 293 +F YQ +S+ P +S Sbjct: 299 NFSYQSIMSSSKPQLS 314 >gi|121597580|ref|YP_989692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|167002262|ref|ZP_02268052.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] gi|121225378|gb|ABM48909.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|243062001|gb|EES44187.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] Length = 511 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 21/251 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----- 85 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIASV 118 Query: 86 ----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 A Y G + + + ++ LIV SAND A+ +A+ + + F MN+T Sbjct: 119 GRDEARMY------LTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDT 172 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ LG+ +HF++ G+ HY+TA D++IL+ R+ DFP + + + Sbjct: 173 ARRLGMRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKT 232 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKV 255 N N +G DGMKTG T A+G+ +V +A + +IAV+LG R Sbjct: 233 NKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLAD 292 Query: 256 SASLLSMGFYN 266 + +LL GF + Sbjct: 293 ARALLDQGFAS 303 >gi|228907701|ref|ZP_04071557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228851934|gb|EEM96732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 309 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 62 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSVKAAQTEGA 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+++ L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 122 RIPVQVNDTLTVNDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSEHAK 181 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 182 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 241 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 242 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 301 Query: 261 SMGF 264 S F Sbjct: 302 SYAF 305 >gi|149181665|ref|ZP_01860158.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus sp. SG-1] gi|148850643|gb|EDL64800.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus sp. SG-1] Length = 387 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 13/276 (4%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWN 52 MR+ + I M +L S PF S AE K L++ +TG V+ + Sbjct: 1 MRRIISAILMLVLITSAFAPFAS-AEEKKTELAAGAKSAILIERDTGTVLYDKNSHEKLP 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT ++ L + + + S+ A+ S + G MT+ L + Sbjct: 60 PASMTKIMTMILIMEALDKGQIKWEDEVRTSEYAASMGGSQIFLEPGEVMTVKEMLLGIS 119 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND +VA+AE + +E+ FV+ MNN K+LGL T+F N G+ HY++A DMA+ Sbjct: 120 IGSANDASVAMAEHIAGSEEGFVEKMNNKVKDLGLKDTNFKNPTGLPASEHYSSAHDMAM 179 Query: 173 LSWRI--KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ + + +Y ++ E KK+ NTN V + G DG+KTGFT + + + Sbjct: 180 MAKELLKYQEITKYTGTYESYLREDTDKKFWLVNTNKLVRFYPGVDGLKTGFTNEAKYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A+A + + +IAV+ G RN + + F Sbjct: 240 TATAKKDNMRVIAVVFGEPTPKDRNAEISKMFDYAF 275 >gi|49474221|ref|YP_032263.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49239725|emb|CAF26104.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 387 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 5/236 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 LLD +T ++ E D P+ PASL KLMTA VVF LK+ T +S+NA Sbjct: 35 LLDNDTDTILFEKQSDIPFFPASLVKLMTAEVVFYQLKQGLLSSTQTFEVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L+ LI+ + ND A+ +AE + +E F + MN ++ LGL Sbjct: 95 PSGTTTMFAKVKTKISVSDLLRGLIIVNGNDAAITLAEGISGSEADFAKLMNQRARTLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HF+N G+ + G T RDM +L+ I +P Y + N N + Sbjct: 155 SHSHFVNPTGLSEEGQLVTLRDMIVLARHIAHTYPNYYALYSEPNFTWNKIFQRNKNPLI 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G +G G++ GF++V +A + + L I G D K +L G Sbjct: 215 SKEMGVEGFAFGYSEKEGFSMVVAAYKNHRRLFLAINGLQDGKGHTKEIERILQWG 270 >gi|309379439|emb|CBX22006.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 388 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 7/256 (2%) Query: 11 AMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A+ SN P + A + + P + ++D + ++ D P PA+L +LMTAY+V Sbjct: 23 ALSSNRLP-VRAASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLV 81 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F LK + I ++A + S + G ++ D LK +IV SAND A+ +A Sbjct: 82 FKNLKSGNIRPEETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAG 141 Query: 126 SLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 L + FV+ MN +++LG+ T F N G+ + G +TA+D+A+LS + DFP+Y Sbjct: 142 RLGNGSIENFVKQMNEEARHLGMKNTVFKNPTGLSREGQVSTAKDLAMLSEALMRDFPEY 201 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F IK + + + N N + G +G+K G T + G+N+ S + ++ + L Sbjct: 202 YPLFSIKSFKFENIEQNNRNTLLYRDSGVNGLKAGHTESGGYNLAVSYSGNGRHILVITL 261 Query: 245 GALDRNTRNKVSASLL 260 G+ R ++ LL Sbjct: 262 GSESAEIRAADTSKLL 277 >gi|229172673|ref|ZP_04300231.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3] gi|228610805|gb|EEK68069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3] Length = 317 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIQVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKELKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + + Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVVSTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|223928102|gb|ACN23817.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. enrichment culture clone 7-14] Length = 455 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 17/230 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 L+D TG ++ + PASLTK+MTA + + + K L IT S N Sbjct: 45 LIDAETGTMLYGKNEHNELYPASLTKIMTALLTLEAVDQGKLSLDQEITASASALNGLAA 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ K G TMT++N LK +++ SAN+ +AE++ + FV MN +K LG Sbjct: 105 DGSSAGIKVGETMTVENYLKCMLIVSANEACDVLAEAVSGSVSAFVDAMNAKAKELGCQN 164 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT------ 203 THF+N +G+ HYT+A D+ +++ +P++M + EI T Sbjct: 165 THFVNPNGLHDSQHYTSAWDLYLITAE-ALKYPEFMSICDMGVAEIPASNLSETRRLHTT 223 Query: 204 -----NWAVGTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 NW +L +D G+KTG T +G +V+SA +G ++LI+V+LGA Sbjct: 224 NYLLSNWRANGYLYSDAHGIKTGSTSEAGHCLVSSATKGSRTLISVVLGA 273 >gi|229155565|ref|ZP_04283673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 4342] gi|228627883|gb|EEK84602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 4342] Length = 317 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|229029678|ref|ZP_04185753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271] gi|228731620|gb|EEL82527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271] Length = 317 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D++ G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDSSNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSVKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQRMNEKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QG+ +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|258510666|ref|YP_003184100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477392|gb|ACV57711.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ + P PAS+TK+MTA L + LT +T S +A PP Sbjct: 76 VMDMDTGAVVYAKHSTAPHYPASITKIMTA-----LLALRLGHLTDVLTASTDAVRQPPD 130 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TL + L L++ SAND AV IAE + F MN ++ LG + THF Sbjct: 131 KLYMRAGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEARALGATHTHF 190 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVG 208 +N G+ H TTA DMA+++ R P++ + + KG + N N + Sbjct: 191 VNPSGLPDPRHVTTAYDMAVIA-RAAMQIPEFRTIVDTRSFDWKGTAWQATLTNLNRMLF 249 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNK 267 T+ GA G+KTGFT + +V +A +G + +AV++ + + +LL+ F +++ Sbjct: 250 TYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNLLNYAFLHDE 309 Query: 268 TDR 270 T R Sbjct: 310 TQR 312 >gi|296313509|ref|ZP_06863450.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea ATCC 43768] gi|296839954|gb|EFH23892.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea ATCC 43768] Length = 389 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|255307153|ref|ZP_05351324.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC 43255] Length = 394 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 41/293 (13%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 8 IISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 68 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 128 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 187 Query: 172 ILSWRIKTDFPQYM--HYFQ----IKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGF 220 IL +YM HY + I +E + + NTN + DG+KTG+ Sbjct: 188 ILG--------KYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGY 239 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T +G+ + S + + + +I V+LG +N R S +LL G N Sbjct: 240 TGNAGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 292 >gi|75675657|ref|YP_318078.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74420527|gb|ABA04726.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 413 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 5/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P LL+ +G V+ E D P+S+ KLMTA VVF+ + + + LT IS+N Sbjct: 54 PTAILLEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVTKGEIKLTDEYVISENTWR 113 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST S + + + L+ I++S ND +A+AE + E F + M ++ Sbjct: 114 KGGAPSGGSTMFAAINSRIPVQDLLRGAIIQSGNDSCMALAEGIAGHESAFAEKMTARAR 173 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LG+S + F N+ G+ + T R++A L+ I +P + F + + N Sbjct: 174 ELGMSRSTFANSSGLPHPDNKMTVRELAALARHIILTYPDFYKLFGEREFTWNKIRQSNR 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + GADG+KTG+T G+ +V S +Q LI V+ G + R + LL G Sbjct: 234 NALLAAMDGADGLKTGYTKEGGYGLVGSVVQNGTRLIVVVNGLESADYRLTAARKLLEWG 293 Query: 264 FYN 266 F N Sbjct: 294 FRN 296 >gi|310642604|ref|YP_003947362.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] gi|309247555|gb|ADO57122.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] Length = 420 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 123/243 (50%), Gaps = 23/243 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +L+D +G +I D ASLTK+MTA V + L + +S A Sbjct: 65 SLIDVTSGRIIYSAEGDRELRIASLTKIMTAIVAI-----EHGRLQDRVKVSSTAYAKEG 119 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ + G MTL+N L L+++S ND A AIAE + TE+ FV MN+ + LGL+ TH Sbjct: 120 SSLFLQMGEQMTLENMLYGLMLRSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGLNHTH 179 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNW----- 205 F N HG+ GHY++A DMA L T + + F +I E+K PN +W Sbjct: 180 FANPHGLDADGHYSSANDMARL-----TAYALHNPTFARIVKTELKKAPNPNDSWDYSWH 234 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + + GADG+KTGFT + +V+SA + + L AV L D + N A +L Sbjct: 235 NKNKMLRLYEGADGVKTGFTKKAFRCLVSSATREGRQLAAVTLN--DGDDWND-HARMLD 291 Query: 262 MGF 264 GF Sbjct: 292 YGF 294 >gi|315643932|ref|ZP_07897102.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315280307|gb|EFU43596.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 336 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 23/280 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+VI+ ++ + SI ++ + L+ TG V+ + D P PAS++K+MT Sbjct: 46 FVVILMAVYITRVIIPPSIKASSAI----LIHAETGRVLYAQHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + ++IS+ A+ P S +G + TL + LI+ SAND AVAI Sbjct: 102 LVLDAVRSGQHAWDEEVSISRYAAGVPGSGIGMVEGESYTLTQLFQALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGV------------VQHGHYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ + TARD Sbjct: 162 AEHLKGSETQFVKEMNARAKEIGLSDRTVFANASGLPAADLASFAEAATEGETIMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG----TFLGADGMKTGFTCAS 224 A+L+ I P + + + K TN + ++G DG KTG+T ++ Sbjct: 222 AMLARWIMNKHPDLLEVTSQRDFPLPQKDLTLHTTNLMLPGEAHGYVGNDGFKTGYTSSA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ +A +G LI+V++G + R + L++ GF Sbjct: 282 GYCFTGTAARGGNRLISVVMGTESTDQRFTETRKLMNYGF 321 >gi|146277284|ref|YP_001167443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] gi|145555525|gb|ABP70138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] Length = 389 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 41/278 (14%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D T V+ + P PAS++KLMT ++F L++ + + T +S A + S Sbjct: 34 DVTTRTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMNTTFAVSTKAKQMGGSKM 93 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 ++ T+++ + ++V S ND V +AE L TE F + MN +K LG++ + F N Sbjct: 94 FVEERDRPTVEDLIHGIVVNSGNDACVVVAEGLNGTESDFSRAMNVRAKALGMNDSTFTN 153 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------------YP 201 + G + GH + D+ IL+ R+ +FP+Y YF K + P Sbjct: 154 SSGWPEPGHRMSVHDLGILAVRLIEEFPEYYPYFAHTEFNYKDRVPSNANNRNPLLRLGP 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +W ADG+KTG T +G+ +V SA+Q D I +L Sbjct: 214 DGDWT------ADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVL----------------- 250 Query: 262 MGFYNKTDRKK-----INYIIKDFYQQNLSNEVPNISE 294 G + DR + +N+ + F Q+ L + ++E Sbjct: 251 TGLATEADRAQEGEQIVNWAFRQFVQKTLVKKGQRVAE 288 >gi|126699758|ref|YP_001088655.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630] gi|115251195|emb|CAJ69026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile] Length = 397 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 41/293 (13%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 11 IISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 71 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 130 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 131 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 190 Query: 172 ILSWRIKTDFPQYM--HYFQ----IKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGF 220 IL +YM HY + I +E + + NTN + DG+KTG+ Sbjct: 191 ILG--------KYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGY 242 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T +G+ + S + + + +I V+LG +N R S +LL G N Sbjct: 243 TGNAGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 295 >gi|325265744|ref|ZP_08132433.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans ATCC 33394] gi|324982875|gb|EGC18498.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans ATCC 33394] Length = 489 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 129/280 (46%), Gaps = 18/280 (6%) Query: 20 LSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 LS++ T P+ Y + D + V+AE P PASLT LM AY+ F L + Sbjct: 130 LSLSATQSAPHIQAAAYAVYDAQSRQVLAEKNFALPIEPASLTHLMVAYLAFKALDAQTI 189 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 T+S+NA + + ++G + L +++ S ND A+ +AE + +E F Sbjct: 190 TPKQEWTVSENAWKSAGNRMFLERGGKANTIDLLHGMLILSGNDAALTLAEGMAGSESAF 249 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF N G+ H ++ +D+ ILS + DFP Y F K Sbjct: 250 VAQMNAEAERLGMRQTHFENVTGLHSPKHVSSVQDLLILSQALLRDFPDYYQIFAKKTFT 309 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 PN N + DG+K G++ +G++++ + + + + ++++GA R Sbjct: 310 YNKITQPNHNLLLFRNDDVDGLKAGYSDIAGYHLITGSHRNGRRIFSIVIGASSNEARAI 369 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 S RK +NY ++ F Q + I+E Sbjct: 370 ES-------------RKLLNYALEAFDTQKIYAANTKITE 396 >gi|228933281|ref|ZP_04096137.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826442|gb|EEM72219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 317 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTEGKTKRFTETNKLM 309 Query: 261 SMGF 264 + F Sbjct: 310 TYAF 313 >gi|228985080|ref|ZP_04145247.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774567|gb|EEM22966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 317 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKGFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|52143467|ref|YP_083362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|118477407|ref|YP_894558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|196036868|ref|ZP_03104255.1| beta-lactamase [Bacillus cereus W] gi|196041913|ref|ZP_03109201.1| beta-lactamase [Bacillus cereus NVH0597-99] gi|196047003|ref|ZP_03114222.1| beta-lactamase [Bacillus cereus 03BB108] gi|218903102|ref|YP_002450936.1| beta-lactamase [Bacillus cereus AH820] gi|225863912|ref|YP_002749290.1| beta-lactamase [Bacillus cereus 03BB102] gi|228914571|ref|ZP_04078180.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927044|ref|ZP_04090110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945594|ref|ZP_04107944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121530|ref|ZP_04250757.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201] gi|229184187|ref|ZP_04311396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1] gi|300117552|ref|ZP_07055339.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] gi|51976936|gb|AAU18486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|118416632|gb|ABK85051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|195990521|gb|EDX54502.1| beta-lactamase [Bacillus cereus W] gi|196022107|gb|EDX60795.1| beta-lactamase [Bacillus cereus 03BB108] gi|196027285|gb|EDX65904.1| beta-lactamase [Bacillus cereus NVH0597-99] gi|218535102|gb|ACK87500.1| beta-lactamase [Bacillus cereus AH820] gi|225788359|gb|ACO28576.1| beta-lactamase [Bacillus cereus 03BB102] gi|228599302|gb|EEK56913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228661994|gb|EEL17607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201] gi|228814112|gb|EEM60383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832779|gb|EEM78350.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844890|gb|EEM89932.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|298725087|gb|EFI65742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] Length = 317 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 + F Sbjct: 310 TYAF 313 >gi|260683741|ref|YP_003215026.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260687401|ref|YP_003218535.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260209904|emb|CBA63846.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260213418|emb|CBE05068.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] Length = 397 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 41/293 (13%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 11 IISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 71 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 130 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 131 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 190 Query: 172 ILSWRIKTDFPQYM--HYFQ----IKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGF 220 IL +YM HY + I +E + + NTN + DG+KTG+ Sbjct: 191 ILG--------KYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGY 242 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T +G+ + S + + + +I V+LG +N R S +LL G N Sbjct: 243 TGNAGYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 295 >gi|255101277|ref|ZP_05330254.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-63q42] Length = 394 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 41/293 (13%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 8 IISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 68 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 128 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 187 Query: 172 ILSWRIKTDFPQYM--HYFQ----IKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGF 220 IL +YM HY + I +E + + NTN + DG+KTG+ Sbjct: 188 ILG--------KYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGY 239 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T +G+ + S + + + +I V+LG +N R S +LL G N Sbjct: 240 TGNAGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 292 >gi|261400191|ref|ZP_05986316.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC 23970] gi|269210194|gb|EEZ76649.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC 23970] Length = 388 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ D P PA+L +LMTAY+VF LK + I ++A + Sbjct: 47 HVVIDLQSRQTLSAKNIDAPAEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSE 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G ++ D LK +IV SAND A+ +A L + FV+ MN ++ LG+ Sbjct: 107 GSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARRLGMKN 166 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ Q +TARD+A+L+ + DFP+Y F IK + + + N N + Sbjct: 167 TLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 226 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 227 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 281 >gi|298368809|ref|ZP_06980127.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon 014 str. F0314] gi|298282812|gb|EFI24299.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon 014 str. F0314] Length = 450 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 13/243 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D + V+A N PD+ PASLTK+MTAY+ F L++ +T+S Sbjct: 91 FIVKDLQSNQVLAANNPDNLIEPASLTKMMTAYLTFKALEDGTLKADEMLTVSDAGWHTE 150 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-------KTE------KKFVQH 137 S +++ + LK +IV+S ND A+ +AE++ +TE + FV Sbjct: 151 GSRMFLNPHVPVSVSDLLKGMIVQSGNDAAITLAEAIGGIGNDSEQTETPKPPLENFVAM 210 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN +K LG++ T F N G+ H +T D+A+L+ + D+P+Y F +K G Sbjct: 211 MNMEAKRLGMNHTRFNNPTGLASERHLSTVSDLALLAAALIRDYPKYYPIFSLKSFRYNG 270 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + PN N + DG+KTG T ++G+N+ AS+ + + +I +++GA R S Sbjct: 271 IEQPNRNLLLFRDSSVDGLKTGHTESAGYNLAASSNRNGRRIITIVVGAESTEARASESG 330 Query: 258 SLL 260 LL Sbjct: 331 KLL 333 >gi|90417678|ref|ZP_01225590.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90337350|gb|EAS51001.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 364 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 8/230 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D TG V+ D P+ PASL K+MT +VF+ +K+ L T +S++A Sbjct: 13 LVDGETGTVLFAKNADAPFPPASLAKMMTMEIVFAAIKDGTLTLDTEFPVSEHAWRTGGA 72 Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST + S + + ++ I++SAND A+ IAE + +E F + MN ++ LG+ Sbjct: 73 PSRTSTMFAELKSQVPVSALIRGAIIQSANDAAIVIAEGMEGSEAAFAERMNARARELGM 132 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + F N G+ Y TARD+ L+ +++ +P+ + E N N + Sbjct: 133 INSRFANPTGLPADDQYVTARDLITLARHLRSTYPELYAIYAEPAFEWNKIFQRNRNPLL 192 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---ALDRNTRNK 254 +GADG++TG+T ASGF++V + G + + + G A DR + + Sbjct: 193 SMEIGADGIETGYTEASGFSLVGATSHGGRDTLLAVSGLETAGDRASEAR 242 >gi|325202334|gb|ADY97788.1| penicillin-binding protein 6 precursor [Neisseria meningitidis M01-240149] gi|325207913|gb|ADZ03365.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis NZ-05/33] Length = 389 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ + L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLVGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 282 >gi|261377658|ref|ZP_05982231.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC 14685] gi|269145924|gb|EEZ72342.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC 14685] Length = 389 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 1/212 (0%) Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 P PA+LT+LMTAY+VF LK + I ++A + S + G+ + D+ LK Sbjct: 67 PVEPAALTQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSDGSRMFVRPGNLIRTDDLLK 126 Query: 110 LLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +I SAND A+ +A+ L + F++ MN ++ LG+ T F N G+ Q +TAR Sbjct: 127 GMIALSANDAALTLADKLGNGSIENFIKQMNEEARRLGMKDTLFKNPTGLSQERQVSTAR 186 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 D+A+LS + DFP+Y F IK + K + N N + G +G+K G T + G+N+ Sbjct: 187 DLALLSEALILDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDSGVNGLKAGHTESGGYNL 246 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 S + ++ + LG+ R ++ LL Sbjct: 247 AVSYTGNGRHILVITLGSESAEIRASDNSKLL 278 >gi|254975737|ref|ZP_05272209.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-66c26] gi|255093124|ref|ZP_05322602.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP 107932] gi|255314866|ref|ZP_05356449.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-76w55] gi|255517540|ref|ZP_05385216.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-97b34] gi|255650651|ref|ZP_05397553.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-37x79] gi|306520578|ref|ZP_07406925.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] Length = 394 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 41/293 (13%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 8 IISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 68 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 128 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 187 Query: 172 ILSWRIKTDFPQYM--HYFQ----IKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGF 220 IL +YM HY + I +E + + NTN + DG+KTG+ Sbjct: 188 ILG--------KYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGY 239 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 T +G+ + S + + + +I V+LG +N R S +LL G N Sbjct: 240 TGNAGYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 292 >gi|218289604|ref|ZP_03493824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] gi|218240254|gb|EED07437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] Length = 414 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 6/237 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ AS+TK+MT ++F + K T + S+ A+ S Sbjct: 66 LMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKWTDRVQASERAASMGGS 125 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TMT+ + +K + + SAND VA+AE L +E+ FV MN +K LG++ THF Sbjct: 126 QIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVARMNQRAKELGMTDTHF 185 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N +G+ HY++A D+AI+S R P+ + + + K +P NTN V Sbjct: 186 ANCNGLPAPNHYSSAHDIAIMS-RALLMHPEVTAFTSVYSDYLRKDTDHPLWLVNTNKLV 244 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G DG+KTG+T + + + A+A + +IAV++G RN A +L+ F Sbjct: 245 RFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTVRNAEIAGMLNYAF 301 >gi|302390892|ref|YP_003826712.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302202969|gb|ADL11647.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 386 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 5/245 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ PAS+TK+MT + + + L + S+ AS S Sbjct: 39 LMEAETGQVLFTKNVTEELPPASITKIMTLLLAMEAIDSGQMNLDDTVIASEFASSMGGS 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 M ++ L+ + + SAND VA+ E + + + F++ MN + LGL T+F Sbjct: 99 QIYLAPKEKMKVETLLESIAIASANDACVALGEHIAGSYQNFIKMMNERASELGLKDTNF 158 Query: 153 MNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 +N+ G+ HY++ARD+AI+S + P+ + + I +I+ ++ NTN + Sbjct: 159 INSTGLPTDDGAHYSSARDIAIMSRELINKHPKVLDWTSIWIDKIRNGEFTLYNTNDLIN 218 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + GADG+KTG+T +G+ + A+A + LI+V++ R + SA LL+ GF ++ Sbjct: 219 YYPGADGLKTGWTDKAGYCLAATAKRDGMRLISVVMKTDSEEARMEESAKLLNYGF-SRF 277 Query: 269 DRKKI 273 D KK+ Sbjct: 278 DLKKV 282 >gi|255656129|ref|ZP_05401538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-23m63] Length = 394 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 142/287 (49%), Gaps = 29/287 (10%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 8 IISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 68 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 128 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 187 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 IL + ++ + I +E + + NTN + DG+KTG+T +G+ Sbjct: 188 ILGKYMFDNYEK--QVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 245 Query: 227 NIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + S + + + +I V+LG +N R S +LL G N Sbjct: 246 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 292 >gi|218767989|ref|YP_002342501.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis Z2491] gi|121051997|emb|CAM08306.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis Z2491] gi|319410238|emb|CBY90578.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase; DD-carboxypeptidase; CPase; PBP5) [Neisseria meningitidis WUE 2594] Length = 389 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|214090056|gb|ACJ63448.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum sp. 11a] Length = 199 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG + + D PASLTK+MT Y++F ++ + T I +S A+ PP+ Sbjct: 48 VIDANTGKTLFASNADAQRYPASLTKMMTLYMLFEAMQAGRMNKDTRIPVSAYAAARPPT 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G ++ ++A +I KSAND+A A+ E + +E++F Q M ++ LG+ T F Sbjct: 108 KIGFRSGQSIRAEDAALAMITKSANDVATAVGEYIGGSEERFAQMMTAKARRLGMRNTTF 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 NA G+ +TTARDMAILS ++ FP Sbjct: 168 RNASGLPNMAQHTTARDMAILSIALRQHFP 197 >gi|325144238|gb|EGC66544.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M01-240013] Length = 389 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|325127981|gb|EGC50880.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis N1568] Length = 389 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|258511715|ref|YP_003185149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478441|gb|ACV58760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 414 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 128/252 (50%), Gaps = 6/252 (2%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P S+ + L+D TG V+ AS+TK+MT ++F + K T Sbjct: 51 PAASVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKWT 110 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + S+ A+ S + G TMT+ + +K + + SAND VA+AE L +E+ FV Sbjct: 111 DRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVAR 170 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-K 196 MN +K LG++ THF N +G+ HY++A D+A++S R P+ + + + K Sbjct: 171 MNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAVMS-RALLMHPEITAFTSVYSDYLRK 229 Query: 197 GKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +P NTN V + G DG+KTG+T + + + A+A + +IAV++G R Sbjct: 230 DTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTVR 289 Query: 253 NKVSASLLSMGF 264 N A++L+ F Sbjct: 290 NAEIAAMLNYAF 301 >gi|293400812|ref|ZP_06644957.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305838|gb|EFE47082.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 378 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 18/254 (7%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 IA+ K Y L++ +G VI PAS+TK+M ++F L + K +T Sbjct: 23 IAQNAKSAY--LMEYTSGKVIYAKNEKAKLYPASMTKMMGLLLIFESLHDGKLDWKDEVT 80 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S A+ S ++ TM++ + +K + + SAND VA+AE + + + FV+ MN Sbjct: 81 TSAYAASMGGSQVFLEENETMSVKDMIKSICIASANDAMVAMAEKVGGSAEHFVEMMNEK 140 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-----------WRIKTDFPQYMHYFQI 190 +K L L THFMN G+ HYT A+DMAI+ +I + + Y+ Sbjct: 141 AKKLNLCNTHFMNPTGLHDPQHYTCAKDMAIVGKALIKEGGDDLLKITSTYDAYIREDSE 200 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + NTN + + G DG+K+GFT + I +A + D LIAV++G Sbjct: 201 KAFWL-----VNTNKLLKQYPGVDGLKSGFTSQAMSCITITAKKKDLRLIAVVMGEPSSK 255 Query: 251 TRNKVSASLLSMGF 264 RN +L GF Sbjct: 256 VRNGEIKQMLDYGF 269 >gi|325130023|gb|EGC52816.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis OX99.30304] Length = 389 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|313668657|ref|YP_004048941.1| D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica ST-640] gi|313006119|emb|CBN87580.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica 020-06] Length = 388 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ D P PA+L +LMTAY+VF LK + I ++A + Sbjct: 47 HIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSE 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G ++ D LK +IV SAND A+ +A L + FV+ MN ++ LG+ Sbjct: 107 GSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARRLGMKN 166 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ Q +TARD+A+L+ + DFP+Y F IK + + + N N + Sbjct: 167 TLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 226 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 227 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 281 >gi|218507214|ref|ZP_03505092.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil 5] Length = 200 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ + D PASLTK+MT Y+ F L + + +T+S+NA P Sbjct: 33 VVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHQGRLTWEQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L +E+ F + M + + LG+ T F Sbjct: 93 KLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFARAMTDKAHQLGMKDTVF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 N G+ TTARDMA L + DFP+ F ++G + +G K Sbjct: 153 KNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMK 199 >gi|296450439|ref|ZP_06892195.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296879438|ref|ZP_06903432.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296260700|gb|EFH07539.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296429584|gb|EFH15437.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 397 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 142/287 (49%), Gaps = 29/287 (10%) Query: 7 IIAMAM-LSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 II++AM L I P S A+ + Y+ L+D TG V+ PD ASL+K+MT Sbjct: 11 IISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND A+ Sbjct: 71 FLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAAI 130 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMA 171 AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + + +TA+D+A Sbjct: 131 AIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDIA 190 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 IL + ++ + I +E + + NTN + DG+KTG+T +G+ Sbjct: 191 ILGKYMFDNYEK--QVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 248 Query: 227 NIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + S + + + +I V+LG +N R S +LL G N Sbjct: 249 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKEN 295 >gi|121634652|ref|YP_974897.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis FAM18] gi|120866358|emb|CAM10101.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis FAM18] Length = 389 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|332365993|gb|EGJ43749.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1059] Length = 455 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|301053509|ref|YP_003791720.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|300375678|gb|ADK04582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 317 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNEALYIEGIDGLKTGFTDSAGYCFTGTAKQGDIRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 + F Sbjct: 310 TYAF 313 >gi|315646383|ref|ZP_07899501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315278026|gb|EFU41346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 394 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 135/275 (49%), Gaps = 29/275 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++I +L I P + A+ K P L+D +G ++ D ASLTK+ Sbjct: 14 MLIAVCCLLVTIAPVV-YADHEKGPANHAQAAALIDVTSGRMLYSKNGDERLRIASLTKI 72 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA V K L + ISKNA S+ K G MTL+N L L+++S ND Sbjct: 73 MTAIVAIEHGK-----LDDRVKISKNAFAKEGSSIFLKLGEEMTLENLLFGLMLRSGNDA 127 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIK 178 A AIAE + TE+ FV MN + LG++ +HFMN HG+ HY++A DMA L ++ +K Sbjct: 128 ATAIAEHVGGTEEGFVMLMNEKAAQLGMTNSHFMNPHGLDHDEHYSSANDMAKLTAYALK 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW---------AVGTFLGADGMKTGFTCASGFNIV 229 + +I K PN +W + + GADG+KTG+T + +V Sbjct: 188 NPV-----FSEIVKTPTKKAPNPNESWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLV 242 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +SA + Q + AV L D N N S ++L GF Sbjct: 243 SSATRNGQQIAAVTLN--DGNDWNDHS-NMLDYGF 274 >gi|258515293|ref|YP_003191515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257778998|gb|ACV62892.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 392 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ PD AS+TK+MT + + K LT IT S+NA S Sbjct: 49 LMEANTGKILWSKQPDKELPMASVTKIMTMLLAVEAVDAGKVKLTDKITTSENAWNMGGS 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++++ L + V SAND VA+AE L +E+ FV MN +K LGL+ T+F Sbjct: 109 QIYLEPGEELSMEEMLISIAVGSANDACVAVAEHLGGSEEAFVGMMNKKAKELGLAHTNF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKGKKYP--NTN---- 204 N +G+ HYT+A DMA++ IK P ++ I +++G + NTN Sbjct: 169 ANTNGLPVENHYTSAHDMAMI---IKEALRHPLFVKVSSIYRYDLRGGDFVLWNTNKLLK 225 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W GT G KTG+T + + + ++ + LIAV+LG + + + S L + GF Sbjct: 226 WYEGTVAG----KTGWTNEAKYCLASAVERKGLRLIAVVLGTAEPKSHFRESMKLYNYGF 281 >gi|325690106|gb|EGD32110.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK115] Length = 455 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVMDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAISFKGYYNPQNYDNTLSNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|332363024|gb|EGJ40811.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK355] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQAIANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNTLSNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFDTYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|229007696|ref|ZP_04165288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228753564|gb|EEM03010.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] Length = 426 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 138/300 (46%), Gaps = 36/300 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+ L I+ + +LS F L + ++ + L D +TG ++ E PD Sbjct: 3 MRKILSILLVFLLS--FSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 61 ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYH 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGH 163 +I+ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ +H Sbjct: 121 SIIIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 180 Query: 164 YT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNW----A 206 T +ARDM ILS I T +P+ + + K + N NW A Sbjct: 181 GTDPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGA 240 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300 >gi|332361675|gb|EGJ39479.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1056] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|325694037|gb|EGD35955.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK150] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|302389347|ref|YP_003825168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302199975|gb|ADL07545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 410 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 12/248 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PAS TK+MT + +K L+ + + + + Sbjct: 39 LMDVKTGKVLYEKNAHLKLEPASTTKIMTTVIAL-----EKGKLSDTVVTGREPTLADGT 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G +TL+ L +++ S ND AVAIAE + + +F + MN ++ +G T+F Sbjct: 94 RIYLEEGEKLTLEQMLYGMMLNSGNDAAVAIAEHIAGSVPEFAKLMNEKAREIGAKNTNF 153 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTNWA 206 +N G+ HYTTA D+A++S + P++ K +I +GK++ N N Sbjct: 154 VNPSGLPDKNHYTTAYDLALISRYALLNHPEFRKIVSTKTFKIPWQGKEWDRLLINHNKM 213 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G DG+KTG+T ++G VASA + L+AV+L + RN + A LL GF N Sbjct: 214 LWRYEGTDGVKTGYTRSAGQTFVASATRNGWQLLAVVLKSQGRNIYSDAQA-LLDYGFDN 272 Query: 267 KTDRKKIN 274 + IN Sbjct: 273 FEKKDVIN 280 >gi|225163790|ref|ZP_03726088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium TAV2] gi|224801583|gb|EEG19881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium TAV2] Length = 310 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D TG V+ E D P PAS+TKLMT VV + ++ TP+TIS A Sbjct: 40 YIVTDAATGRVLLEENSDAPNPPASVTKLMTFLVVHDKITARQLSFDTPVTISLEAQRMG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + T+D+ L L+V+SAND A+A+AE+ + + FV+ MN + LG++ T Sbjct: 100 GSQVYLETQERFTVDDLLYALMVQSANDAAIALAEAAAGSREAFVELMNTRAHQLGMTHT 159 Query: 151 HFMNAHGVV------QHGHYTTARDMAILSWR--IKTDFPQY----MHYFQIKGLEIKGK 198 + HG+ Q + RD+A+LS + TD +Y F+ G +++ Sbjct: 160 TWRTPHGLPPNTSLGQEPDLASPRDIALLSRHLLLNTDILRYTSTKTRDFR-PGPKVQAM 218 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K N N + G DG+KTG+ +GF++ A+ + D+ +I V LG +R R+ + AS Sbjct: 219 K--NHNHLLWRVNGCDGLKTGYYAKAGFSLAATVQRNDRRIIVVTLGVPERKQRDVLVAS 276 Query: 259 LLSMGF 264 L+ GF Sbjct: 277 LIEKGF 282 >gi|325697148|gb|EGD39035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK160] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|125717597|ref|YP_001034730.1| DD-carboxypeptidase [Streptococcus sanguinis SK36] gi|125497514|gb|ABN44180.1| DD-carboxypeptidase, putative [Streptococcus sanguinis SK36] Length = 451 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 29 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 88 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 89 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 148 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 149 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAISFKGYYNPQNYDNTLSNQTTARDLA 208 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 209 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 269 NGAFNYIATIKRGDQRMIAVIMGVGD 294 >gi|324993328|gb|EGC25248.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK405] gi|332362608|gb|EGJ40406.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK49] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|323352662|ref|ZP_08087632.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis VMC66] gi|322121698|gb|EFX93444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis VMC66] gi|324995361|gb|EGC27273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK678] gi|327468942|gb|EGF14414.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK330] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|206977452|ref|ZP_03238347.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|206744302|gb|EDZ55714.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] Length = 317 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|220932948|ref|YP_002509856.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Halothermothrix orenii H 168] gi|219994258|gb|ACL70861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Halothermothrix orenii H 168] Length = 388 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 7/238 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E D PAS+TK+MT + + + L + +T+S+ A S Sbjct: 36 LIDAESGQVLYEKNADKKLPPASITKIMTLLLTMEEVDKGNISLDSMVTVSQLAESMGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + L + LK + + SAND VA+AE++ TE+ FV+ MN ++ LG+ THF Sbjct: 96 QIYLAADTRLKLRDLLKAVTIASANDACVAVAEAVAGTEENFVRWMNKRARELGMKNTHF 155 Query: 153 MNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKK--YPNTNWA 206 N G+ G HYTTARD+AI++ R PQ + + I I G+K NTN Sbjct: 156 SNTTGLPTDGEHYTTARDVAIMA-RELIKHPQVLKWASIWVDYIDLPNGRKAMLTNTNRL 214 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG+KTG T A+G+ + A+A + LI+VI+ R + +A LL GF Sbjct: 215 INDYPGMDGLKTGHTDAAGYCLAATARRNGMRLISVIMKGETEREREEATARLLDYGF 272 >gi|324990581|gb|EGC22517.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK353] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|290968005|ref|ZP_06559554.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp. type_1 str. 28L] gi|290781911|gb|EFD94490.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp. type_1 str. 28L] Length = 321 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 21/243 (8%) Query: 33 LLDTNTGHVIAENYPDHPW-NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 LLD NTG ++ +Y + W +PAS TK++T + + L + + L P+ IS+ A E P Sbjct: 55 LLDVNTGKILF-SYHGNKWVHPASTTKIVT---LLTALAQGRERLEQPLYISRQAVETEP 110 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S +++ AL ++V S ND AVA+AE+L + F MN +K +G + + Sbjct: 111 SRLGLATTDKVSVREALTGMMVVSGNDAAVAVAETLGGSVPAFADMMNGQAKKMGATHSL 170 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-----PNTNWA 206 F+N +G+ Q H+TTA DMA ++ Y + I GL+ KY P T + Sbjct: 171 FLNPNGLTQVHHHTTAIDMARMA---AYGMKNYAEFRDIVGLKSYTMKYLDAHKPKTVYT 227 Query: 207 VGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 FL GADG+KTG+T A+G +VASA + +LI + + R + +A +L Sbjct: 228 TNRFLRSGYIGADGIKTGYTRAAGPCLVASATRNGHTLIVAL---FNDAARWQDAARILD 284 Query: 262 MGF 264 GF Sbjct: 285 YGF 287 >gi|325688308|gb|EGD30327.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK72] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|260575562|ref|ZP_05843560.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] gi|259022205|gb|EEW25503.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] Length = 385 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 16/241 (6%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D T V+ + D PAS++KLMT ++F L++ + + T +S A Sbjct: 31 DLTTHTVLMDKNADVAVPPASMSKLMTINMLFEALRDGRVAMDTTFAVSTRAK-----GM 85 Query: 95 TFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 T GSTM T++ + +I+ S ND V +AE L +E+ F + M+ ++ LG Sbjct: 86 TALGGSTMFLQETDRPTVEQLIHGMIINSGNDACVVVAEGLAGSEEAFAEQMSQRAQALG 145 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NT 203 ++ +HF NA G+ H + D+ +L+ R+ +FP+Y F + N Sbjct: 146 MTNSHFANASGMPDPSHRMSMHDLGLLATRLIEEFPEYYPVFAETEYNYADRAVENRFNR 205 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + +GADG+KTG T +G+ +V SA+QG++ ++ I G R + S +++ Sbjct: 206 NPLLKLNIGADGLKTGHTTEAGYGLVGSAVQGNRRIVFAITGLPSETARAEESERIVNWA 265 Query: 264 F 264 F Sbjct: 266 F 266 >gi|328945504|gb|EGG39655.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1087] Length = 451 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 29 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 88 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 89 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 148 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 149 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 208 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 209 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 269 NGAFNYIATIKRGDQRMIAVIMGVGD 294 >gi|327458687|gb|EGF05035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1057] Length = 455 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQTINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +GDQ +IAVI+G D Sbjct: 273 NGAFNYIATIKRGDQRMIAVIMGVGD 298 >gi|42781103|ref|NP_978350.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|217959457|ref|YP_002338009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|229138682|ref|ZP_04267264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST26] gi|42737024|gb|AAS40958.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|217066480|gb|ACJ80730.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|228644801|gb|EEL01051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST26] gi|324326015|gb|ADY21275.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|222095601|ref|YP_002529658.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|221239659|gb|ACM12369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|111115435|ref|YP_710053.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo] gi|216263478|ref|ZP_03435473.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1] gi|110890709|gb|ABH01877.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo] gi|215980322|gb|EEC21143.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 29/273 (10%) Query: 20 LSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +++AE NKL Y L+D +T V+ P+ + PASLTK++T Y +++ Sbjct: 28 VNLAEINKLSQYAKSIVLMDFDTKRVLYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIK 87 Query: 76 LTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 L + + IS +AS Y PP++S +KG + + LK L V S ND ++AIAE + Sbjct: 88 LKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDL 147 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMH--- 186 FV MN + NLGL HF+ G TA DMA S+ K F +H Sbjct: 148 NSFVNLMNINAFNLGLFNMHFVEPSGYSNENK-ITALDMAFFAKSYVEKFKFMLNIHSLK 206 Query: 187 YFQIK-----GLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 YF G + K K N N + + +DG+KTG+ SG N+VA+A++G++ Sbjct: 207 YFVYPKSKNLGTTLSSKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATALKGER 266 Query: 238 SLIAVILGA------LDRNTRNKVSASLLSMGF 264 LIAV+LG R ++ +L GF Sbjct: 267 RLIAVVLGVEKGINRFGEKMRALIAKNLFEYGF 299 >gi|239998641|ref|ZP_04718565.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae 35/02] gi|240013763|ref|ZP_04720676.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae DGI18] gi|240115295|ref|ZP_04729357.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID18] gi|240120831|ref|ZP_04733793.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID24-1] gi|240125386|ref|ZP_04738272.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae SK-92-679] gi|240127841|ref|ZP_04740502.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae SK-93-1035] gi|260440888|ref|ZP_05794704.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae DGI2] gi|268594495|ref|ZP_06128662.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02] gi|268600975|ref|ZP_06135142.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18] gi|268683987|ref|ZP_06150849.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-92-679] gi|268686238|ref|ZP_06153100.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-93-1035] gi|268547884|gb|EEZ43302.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02] gi|268585106|gb|EEZ49782.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18] gi|268624271|gb|EEZ56671.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-92-679] gi|268626522|gb|EEZ58922.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-93-1035] Length = 389 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I AND A+ +A+ L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + + + N N + Sbjct: 168 TVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 282 >gi|218233888|ref|YP_002366673.1| beta-lactamase [Bacillus cereus B4264] gi|218161845|gb|ACK61837.1| beta-lactamase [Bacillus cereus B4264] Length = 317 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ IS A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKISAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|194098190|ref|YP_002001238.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945] gi|291044211|ref|ZP_06569920.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2] gi|193933480|gb|ACF29304.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945] gi|291011105|gb|EFE03101.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2] gi|317163912|gb|ADV07453.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 441 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 100 HIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 159 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I AND A+ +A+ L + FVQ MN ++ LG+ Sbjct: 160 GSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENFVQQMNKEARRLGMKN 219 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + + + N N + Sbjct: 220 TVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 279 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 280 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 334 >gi|293399410|ref|ZP_06643563.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Neisseria gonorrhoeae F62] gi|291609979|gb|EFF39101.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Neisseria gonorrhoeae F62] Length = 441 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 100 HIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 159 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I AND A+ +A+ L + FVQ MN ++ LG+ Sbjct: 160 GSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENFVQQMNKEARRLGMKN 219 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + + + N N + Sbjct: 220 TVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 279 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 280 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESTETRASDNSKLLNRAL 334 >gi|253682095|ref|ZP_04862892.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] gi|253561807|gb|EES91259.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] Length = 412 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 17/247 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D + PAS TK+MTA + + + L +T+ KNA S Sbjct: 38 LMDKNTGQILYSKNLDTQYPPASTTKIMTALLTL-----ENSNLNDVVTVGKNAVNVDGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T+ + L L+++SAND A+A++E + + K+FV MN +K LG T+F Sbjct: 93 KVYLFEGEKLTIKDLLHALLLQSANDSAIALSEHVSGSTKEFVNLMNKRAKELGCKHTNF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIK--TDFPQY----MHYFQIKGLEIKGKKYPNTNWA 206 +N HG+ H TTARD+ ++ + +F + M+Y E K + N + Sbjct: 153 VNPHGLYDDKHRTTARDLGLILRELSKHDEFKEIATTSMYYINPTNKEAKKRPIWNKDKL 212 Query: 207 VGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 V + G +G KTG+T S + VA+A + ++SLIA++L N V L Sbjct: 213 VQKKSKYYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAILLHDQKHTYWNDV-IKLFD 271 Query: 262 MGFYNKT 268 GF N T Sbjct: 272 YGFNNYT 278 >gi|126462962|ref|YP_001044076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|332558995|ref|ZP_08413317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] gi|126104626|gb|ABN77304.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|332276707|gb|EGJ22022.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] Length = 389 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 136/311 (43%), Gaps = 45/311 (14%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R FL +I LS + ++A + + D T V+ + P PAS++KLMT Sbjct: 5 RLFLALI----LSLVTALPAMAFDTRARAAWVYDVTTHTVLLDKNAHEPLPPASMSKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 ++F L++ + + T +S A + S ++ T++ + +IV S ND V Sbjct: 61 LNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACV 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L TE F + M +K LG++ + F N+ G GH + D+ IL+ R+ +F Sbjct: 121 VVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEF 180 Query: 182 PQYMHYFQIKGLEIKGKK-------------YPNTNWAVGTFLGADGMKTGFTCASGFNI 228 P++ YF K + PN +W ADG+KTG T +G+ + Sbjct: 181 PEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWT------ADGLKTGHTQEAGYGL 234 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK-----INYIIKDFYQQ 283 V SA+Q D I +L G + DR + +N+ + F Q+ Sbjct: 235 VGSAVQKDGRRIVFVL-----------------TGLATEADRAQEGEQIVNWAFRQFVQK 277 Query: 284 NLSNEVPNISE 294 L + ++E Sbjct: 278 TLVTKGQRVTE 288 >gi|229000174|ref|ZP_04159743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228759506|gb|EEM08483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 426 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 139/298 (46%), Gaps = 32/298 (10%) Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I+ + +LS ++ +S AE + L D +TG ++ E PD AS Sbjct: 3 MRKILSILLVFLLSFSSLGVTISHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLL 111 ++KL+ Y V +KE K T + IS A E SN F+KG T+ + Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYHSI 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYT 165 I+ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ +H T Sbjct: 123 IIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182 Query: 166 --------TARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNW----AVG 208 +ARDM ILS I T +P+ + + K + N NW A Sbjct: 183 DPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300 >gi|254673307|emb|CBA08444.1| putative penicillin-binding protein precursor [Neisseria meningitidis alpha275] Length = 389 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 282 >gi|114566442|ref|YP_753596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337377|gb|ABI68225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 373 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 24/280 (8%) Query: 4 FLVIIAMAMLS---NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L+++ M +++ N P++S PYY L+D +G +I + D AS K+M Sbjct: 12 ILLLLFMGLIASPVNAAPYISS------PYYCLMDGGSGQLILSSNGDETRPVASTVKMM 65 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA + + A + T+S A+ P + K +T+ LK+ +++S+ND A Sbjct: 66 TAILTIEY-----AGMDEEATVSSKAARTPEYSIGLKAEQRITVGELLKVALIRSSNDAA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V +AE + E F M+ + +G S T F NA G+ ++T D+A + R Sbjct: 121 VVLAEHIAGDESLFAHLMSKKAFLIGASNTRFSNASGLPGGEQFSTCSDLAQIG-RYAQS 179 Query: 181 FPQYMHYFQIKGLEIKGKKY------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 PQ + + K Y NTN +G++ GADG+KTG A+G +VASA + Sbjct: 180 HPQIKELVATRQSDFKHPSYSQPLRISNTNPLLGSYQGADGIKTGTANAAGKCLVASATR 239 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + LIAV+L + DR A LL+ GF + ++ IN Sbjct: 240 DGRHLIAVVLKSSDRAGD---CARLLNYGFKDSYYQQIIN 276 >gi|323702413|ref|ZP_08114077.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323532552|gb|EGB22427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 400 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 146/294 (49%), Gaps = 22/294 (7%) Query: 14 SNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSF 68 SN P + + N+L L+D TG V+ E H P AS TK+MTA Sbjct: 43 SNTIPAGNFGQPNRLWVSADAAILMDATTGQVLYEKNA-HKRRPIASTTKIMTA-----L 96 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + L + T+SK+A+ S+ + G +TL++ L ++ S ND VAIAE + Sbjct: 97 LAIECGNLKSVATVSKHAAGTEGSSIYLRAGEKLTLEHLLYGALMHSGNDACVAIAEHIA 156 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 E+ FV MN + LG THF N +G+ H +TA D+A+++ R P + Sbjct: 157 GKEELFVNLMNYKAYLLGARNTHFANTNGLPHDQHLSTAYDLALIT-RHALKNPVFKQIV 215 Query: 189 QIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + +IKG + NTN + ++ GA+G+KTG T A+G +V+SA + + LIAV+L Sbjct: 216 ATRTHKIKGPQGLRYLANTNQMLWSYQGANGVKTGTTNAAGKCLVSSATRDGRLLIAVVL 275 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEVPNISEE 295 A DR S LL GF N T+ KK + + + EVP +++ Sbjct: 276 HAGDRYAD---SIRLLDYGFQNFTNHTVVKKGEVVSTIKVNEGIKAEVPVVADR 326 >gi|325133984|gb|EGC56639.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M13399] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|325142125|gb|EGC64550.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis 961-5945] gi|325198078|gb|ADY93534.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis G2136] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|261392770|emb|CAX50346.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase; DD-carboxypeptidase; CPase; PBP5) [Neisseria meningitidis 8013] gi|325203950|gb|ADY99403.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M01-240355] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|228920684|ref|ZP_04084027.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838985|gb|EEM84283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 309 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 62 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 122 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 181 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 182 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 241 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G ++ R + L+ Sbjct: 242 LNRNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSNKTKRFTETNKLM 301 Query: 261 SMGF 264 S F Sbjct: 302 SYAF 305 >gi|168187889|ref|ZP_02622524.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] gi|169294277|gb|EDS76410.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] Length = 410 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 130/254 (51%), Gaps = 25/254 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ D + PAS TK+MTA L +K L +TI KNA+ S Sbjct: 38 LMDKNTGQILYSKNLDTQYPPASTTKIMTA-----LLAIEKCKLDDVVTIGKNATNVDGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T+ + L L+++SAND AVA++E + + ++FV+ MN +K LG T+F Sbjct: 93 KIYIFEGEKLTVRDLLYALLLQSANDCAVALSEHISGSTQEFVKLMNTRAKELGCKNTNF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNW--- 205 +N HG+ H T+ARD+A+ I + ++ + +I +I K PN + Sbjct: 153 VNPHGLYDDKHRTSARDLAL----ILRELSKHEDFKKIATTQIYTINPTNKEPNKRYIWN 208 Query: 206 --------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + + G +G KTG+T S + VA+A + ++ LIA++L + V Sbjct: 209 KDKLVQKKSKCYYEGCEGGKTGYTIQSKHSFVATATRDNKGLIAILLHDAKHTYWDDV-I 267 Query: 258 SLLSMGFYNKTDRK 271 +L + GF N T K Sbjct: 268 NLFNFGFNNYTREK 281 >gi|262402708|ref|ZP_06079269.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] gi|262351490|gb|EEZ00623.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 69 LKEKKAMLTTPITISKNA--SEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAE 125 +K L + ISKNA +P S+ F + G+T+ + + + +I++S ND VA+AE Sbjct: 6 VKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAE 65 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D P+ Sbjct: 66 HVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDNPDLYSTPYDLALLGQALIRDVPEEY 125 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + G N N W + DG+KTG T +G+N+V+SA +G+ L+AV Sbjct: 126 AIYSEQKFTYNGITQYNRNGLLWD--KSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAV 183 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 ++G + N R S LLS GF Sbjct: 184 VMGTDNENARKAESKKLLSYGF 205 >gi|325206288|gb|ADZ01741.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M04-240196] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|308389049|gb|ADO31369.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha710] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|228994104|ref|ZP_04154004.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228765556|gb|EEM14210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 425 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 138/300 (46%), Gaps = 36/300 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+ L I+ + +LS F L + ++ + L D +TG ++ E PD Sbjct: 3 MRKILSILLVFLLS--FSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 61 ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGLQYTVKELYH 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGH 163 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ +H Sbjct: 121 SIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 180 Query: 164 YT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNW----A 206 T +ARDM ILS I T +P+ + + K + N NW A Sbjct: 181 GTDPNGENSLSARDMGILSRTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGA 240 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300 >gi|161869810|ref|YP_001598979.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442] gi|161595363|gb|ABX73023.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442] Length = 389 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|226330783|ref|ZP_03806301.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198] gi|225201578|gb|EEG83932.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198] Length = 239 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 10/182 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G ++A PD +PASLTK+M++YVV +KE + + + +NA + Sbjct: 42 YVLMDYNSGKILASEKPDERLDPASLTKIMSSYVVGQAIKEGRMSPDDMVIVGRNA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N K S M L ++ ++++S ND ++A+AE + +++ FV MN+ + Sbjct: 100 TGNPVLKGSSLMFLKPGDQVKVIDLNRGMVIQSGNDASIALAEHIAGSQETFVDLMNSYA 159 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 KNLGL T+F HG+ G YTTA+DMA+L+ + D P + K + PN Sbjct: 160 KNLGLKNTYFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYEIHKEKEFTFNNIRQPN 219 Query: 203 TN 204 N Sbjct: 220 RN 221 >gi|78044481|ref|YP_360920.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77996596|gb|ABB15495.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 391 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +++ N+G + D PAS TK+MT + +K L+ + I K A Sbjct: 33 AVINVNSGKFVYLKNADQKMYPASTTKIMTTLIAL-----EKGNLSDRVYIDKEACYVEG 87 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S G ++L++ L +++ SAND A+A+A+ + FVQ MN+ ++ LG TH Sbjct: 88 SAIWLNPGEQLSLEDLLYSIMLNSANDSAIAVAKYIGGDVATFVQEMNDKARELGAKNTH 147 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY----PNTNWA 206 F+N +G+ HYTTARD+A+++ R P++ K I + KY N N Sbjct: 148 FVNPNGLPNDDHYTTARDLALIA-RAAMQNPKFREIAATKTKVINRDPKYLRFLQNHNKL 206 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GA+G+KTG+T + +VASA + + IAV+LG+ RN + + LL F N Sbjct: 207 LWRYEGANGIKTGYTVKARQCLVASAARDGEEFIAVVLGSEGRNVYDDAT-KLLDYAFNN 265 >gi|221639986|ref|YP_002526248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides KD131] gi|221160767|gb|ACM01747.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter sphaeroides KD131] Length = 389 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 41/278 (14%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D T V+ + P PAS++KLMT ++F L++ + + T +S A + S Sbjct: 34 DVTTHTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKM 93 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 ++ T++ + +IV S ND V +AE L TE F + M +K LG++ + F N Sbjct: 94 FVEERDRPTVEELIHGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTN 153 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------------YP 201 + G GH + D+ IL+ R+ +FP++ YF K + P Sbjct: 154 SSGWPDPGHRMSVHDLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGP 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N +W ADG+KTG T +G+ +V SA+Q D I +L Sbjct: 214 NGDWT------ADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVL----------------- 250 Query: 262 MGFYNKTDRKK-----INYIIKDFYQQNLSNEVPNISE 294 G + DR + +N+ + F Q+ L + ++E Sbjct: 251 TGLATEADRAQEGEQIVNWAFRQFVQKTLVTKGQRVTE 288 >gi|225175400|ref|ZP_03729395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169152|gb|EEG77951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 426 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 133/280 (47%), Gaps = 28/280 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPASLTK 58 LV+ + +L N P + AET P L+D TG V+ E PAS+TK Sbjct: 11 LLVVSLIYLLIN--PVATWAETTAFPELNSQAAVLIDAQTGQVLFEKNMHQVLYPASITK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKS 115 +MT + ++ L IT+S+ A N++ +TL+ AL L ++S Sbjct: 69 IMTGIIAL-----EEGNLDDTITMSREAVFSIGRNTSHVALDVDEELTLEQALYALAIES 123 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILS 174 ND A IAE + + F Q MN + G T+F NAHG+ HYTTA DMA IL Sbjct: 124 GNDAANGIAEHISGDVESFAQLMNKRAAEYGAKNTNFTNAHGLPDSDHYTTAYDMALILK 183 Query: 175 WRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAV-GTFLGAD--GMKTGFTCAS 224 +K P + F + E+ + + + N N + G + A+ KTG+T + Sbjct: 184 QAVKN--PAFREIFSARNYEMPPTNKQPESRHFRNRNSLLSGRYEDAEILASKTGWTTLA 241 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G +V +A Q ++ LIAV+L + DR +R + LL GF Sbjct: 242 GHTLVTAARQENRELIAVVLNSQDRRSRYDDTIKLLDYGF 281 >gi|332982023|ref|YP_004463464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699701|gb|AEE96642.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 394 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E AS+TK+MT ++ L + T + +SK+A+ S Sbjct: 55 LMDAATGQLLYEKNAHEKLPIASITKIMTMDLIMEALDSGRIKPTDVVRVSKDAASLGGS 114 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G MT+D +K + V SAND A A+AE + T++ FV+ MN +K+LG++ T+F Sbjct: 115 QIWLEEGEEMTVDEMMKAIAVNSANDAAAAMAEYIAGTQENFVKMMNEKAKSLGMNDTNF 174 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 N HG+ HY++A D+A++S + K D + L NTN + T+ Sbjct: 175 ANVHGLDDDNHYSSAYDVALMSRELAKHDGIFKYTSIWMDTLRDGETNLANTNKLIRTY- 233 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG T + + I A+A + D LIAVILG R +A LL GF T Sbjct: 234 GADGLKTGSTDKAKYCISATAKKDDMRLIAVILGGPTSQVRFDEAAKLLDYGFNTFT--- 290 Query: 272 KINYIIK 278 IN I+K Sbjct: 291 -INRIVK 296 >gi|30020090|ref|NP_831721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29895640|gb|AAP08922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 279 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 32 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 92 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 151 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 152 FANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 211 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 212 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 271 Query: 261 SMGF 264 S F Sbjct: 272 SYAF 275 >gi|228939114|ref|ZP_04101709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228958264|ref|ZP_04119992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801423|gb|EEM48312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228820537|gb|EEM66567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 309 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 62 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 122 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 181 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 182 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 241 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 242 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 301 Query: 261 SMGF 264 S F Sbjct: 302 SYAF 305 >gi|228900575|ref|ZP_04064797.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228859058|gb|EEN03496.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 309 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 62 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 122 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 181 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 182 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 241 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 242 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 301 Query: 261 SMGF 264 S F Sbjct: 302 SYAF 305 >gi|121535761|ref|ZP_01667563.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121305660|gb|EAX46600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 390 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 4/237 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D N G V+ E P PAS+TK+MT + +++ + T + S++A Sbjct: 46 VLMDAN-GAVLWEKEPHKRLPPASVTKVMTLLLAVEAVEQGRIKPTDLVYTSEHAWRQGG 104 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + G MT+ + + V SAND AVA+ E + +E+ V+ MN + +LGL TH Sbjct: 105 SQIWLEPGEAMTVQEMMIAVAVVSANDAAVALMEHIYGSEQAAVEAMNKRAASLGLQNTH 164 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKY-PNTNWAVGT 209 F+N +G+ HY +A D A+L + P YM IK ++ GK + NTN + Sbjct: 165 FVNVNGLPAQDHYMSAYDTALLV-KEAVRHPLYMELCGIKEYWLREGKNWLVNTNKLLWW 223 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + GADG+KTG+T + + +A + LIAV+ + + + S L+ GF N Sbjct: 224 YKGADGLKTGWTEEAKYCFAGTAKRDGLRLIAVVFATPEPRSHLRESMKLMDWGFAN 280 >gi|295696433|ref|YP_003589671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295412035|gb|ADG06527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 403 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 10/236 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ PD P PAS+TK++TA V ++ L IT S+ A+ + Sbjct: 45 LMDMKTGQVLYAKNPDEPHYPASITKILTAIVAL-----ERGQLNDRITTSRLATLQDGN 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +L+ L +++ S ND AVAIAE + F MN T+K +G THF Sbjct: 100 RIYLVEGEEHSLEELLYGMMLNSGNDAAVAIAEHYGGSVAGFAAMMNATAKEIGALHTHF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVG 208 N +G+ H TTA DM ++ R P + K GK++ N N + Sbjct: 160 TNPNGLHDPNHVTTAYDMCLIG-RYAMQNPIFRQIVATKTYPWHGKEWESELVNINRMLW 218 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 T+ GA G+KTG+T + +V SA +G++SLIA ++ + + ++ LL GF Sbjct: 219 TYPGATGIKTGYTDQAQQTMVVSATRGNESLIATLMDIPGQEAMREEASKLLDWGF 274 >gi|229069527|ref|ZP_04202816.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185] gi|228713666|gb|EEL65552.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185] Length = 309 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 62 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 122 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 181 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 182 FANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 241 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 242 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 301 Query: 261 SMGF 264 S F Sbjct: 302 SYAF 305 >gi|308071619|ref|YP_003873224.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681] gi|305860898|gb|ADM72686.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681] Length = 313 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 21/253 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ + D P A+++KLMT +V ++ + + IS+ AS Sbjct: 42 LMDMHTGELLMDVNGDTPMPSANMSKLMTELLVLEDIRAGRLGWNDEVRISRYASTVGGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 N + + G MT+ + ++V SAND AVA+AE E FV+ MN + +GLS+ + Sbjct: 102 NLSLRYGERMTVSELFQSMVVYSANDAAVALAERSAGNESAFVKRMNGKAAQIGLSSDSR 161 Query: 152 FMNAHGV------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 F NA G +Q TA D A L+ + T P+ + +E+K K Sbjct: 162 FSNASGAGQSELGPNHPEDIQGETKMTASDTAKLASYLITSHPEILRTSSRTQMELKDKG 221 Query: 200 --YPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTNW + ++ G DG+K G+T +G+ +A Q + L+AV+LGA + Sbjct: 222 IYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDAGYCFTGTAEQHGRRLVAVVLGAPSKEE 281 Query: 252 RNKVSASLLSMGF 264 R + + L GF Sbjct: 282 RFEQTRRLFDYGF 294 >gi|167567676|ref|ZP_02360592.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147] Length = 328 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D ++G +AE+ PASLTKLMTAY+ LK+ + I+ + Sbjct: 54 WLVVDADSGKTLAEHNVSARREPASLTKLMTAYLALDALKQGTLRWDEKVEIAADDIASV 113 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ++ G + + + ++ LIV SAND A+ +A+ + + F + MN+ ++ LG+ Sbjct: 114 GNDEARMYLAPGQRVQVRDLVRGLIVASANDAALVLAKRIGGSPAGFAKRMNDAAQRLGM 173 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ + DFP++ + + E N N + Sbjct: 174 RDSHFVSPSGITTPDHYSTAHDLSILARHLNQDFPEFYTFSSQQHFEYGKFAKTNKNRLL 233 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVSASLLS 261 DGMKTG T A+G+ +V +A +G +IAV+LG R + LL Sbjct: 234 RADPTVDGMKTGHTNAAGWCMVVTAKRGVAGSHAKHRVIAVLLGEPTEKQRLADAKRLLD 293 Query: 262 MGF 264 GF Sbjct: 294 WGF 296 >gi|167572961|ref|ZP_02365835.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786] Length = 328 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 9/243 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D ++G +AE+ PASLTKLMTAY+ LK+ + I+ + Sbjct: 54 WLVVDADSGKTLAEHNVSARREPASLTKLMTAYLALDALKQGTLRWDEKVEIAADDIASV 113 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ++ G + + + ++ LIV SAND A+ +A+ + + F + MN+ ++ LG+ Sbjct: 114 GNDEARMYLAPGQRVQVRDLVRGLIVASANDAALVLAKRIGGSPAGFAKRMNDAAQRLGM 173 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ + DFP++ + + E N N + Sbjct: 174 RDSHFVSPSGITTPDHYSTAHDLSILARHLNQDFPEFYTFSSQQHFEYGKFAKTNKNRLL 233 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVSASLLS 261 DGMKTG T A+G+ +V +A +G +IAV+LG R + LL Sbjct: 234 RADPTVDGMKTGHTNAAGWCMVVTAKRGVAGSHAKHRVIAVLLGEPTEKQRLADARRLLD 293 Query: 262 MGF 264 GF Sbjct: 294 WGF 296 >gi|332981537|ref|YP_004462978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699215|gb|AEE96156.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 380 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 13/240 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +++ TG V+ D AS TK+MTA L+ + +S NAS Sbjct: 39 AVMEVETGRVLYGKDADKRCPMASTTKIMTAITAIEC-----GDLSDIVEVSDNASGVEG 93 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ + G +TL++ L L+++S ND AVAIAE + + +KFV MNN +K +G TH Sbjct: 94 SSIWLEVGERLTLEDLLYGLMLRSGNDAAVAIAEHIGGSVEKFVDMMNNKAKEIGARNTH 153 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWA 206 F+N HG+ HYTTA D+A++ ++ +K + + + + + +G ++ N N Sbjct: 154 FVNPHGLPDEDHYTTAYDLALITAYAMKNPVFKQIVSTKYRKIPWEGHEWDRAMQNKNKL 213 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GA+G+KTG+T +G +VA+A + L+AV+ L+ + S +LL GF N Sbjct: 214 LWKYEGANGVKTGYTKEAGRCLVAAAYRNGMQLVAVV---LNDGPMWEDSMALLDYGFDN 270 >gi|229150211|ref|ZP_04278433.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550] gi|228633330|gb|EEK89937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNAAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|229043743|ref|ZP_04191445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676] gi|228725596|gb|EEL76851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTATDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|229090965|ref|ZP_04222189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42] gi|228692366|gb|EEL46101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S Sbjct: 130 RIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QG+ +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 + F Sbjct: 310 TYAF 313 >gi|218896938|ref|YP_002445349.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228964967|ref|ZP_04126069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|218545350|gb|ACK97744.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228794708|gb|EEM42212.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|260892753|ref|YP_003238850.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] gi|260864894|gb|ACX52000.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] Length = 381 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 15/253 (5%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PFLS + + L++ + G ++ E AS+ KLMT + +++ K L Sbjct: 27 PFLSTTAKSAV----LMEAHHGQILGEKELHRKQPIASMVKLMTLLLAVEAVEQGKVRLA 82 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +T S++A+ S M+ + L + SAND +VA+AE + +E+ FV Sbjct: 83 DKVTASEHAASMGGSQIFLAPEEVMSFRDLLIAVATASANDASVAVAEHVAGSEEAFVAA 142 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN ++ LG+ TH++NA G+ G Y+TA D A+L R P ++ QIK ++G Sbjct: 143 MNAKARALGMENTHYVNATGLPAEGQYSTAYDQALL-LREALKHPLFLELAQIKEYSLRG 201 Query: 198 KKYP--NTN----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 K+ NTN W GT G KTG+T +G+ + ++A + +LI V+LG + + Sbjct: 202 GKFKLYNTNKLLWWYRGTIAG----KTGWTEEAGYCLASAAKRQGLTLITVVLGCPEPRS 257 Query: 252 RNKVSASLLSMGF 264 + S + + GF Sbjct: 258 HFRESIKIYNWGF 270 >gi|254804742|ref|YP_003082963.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] gi|254668284|emb|CBA05194.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] Length = 389 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T+ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ R ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIRASDNSKLL 278 >gi|228971991|ref|ZP_04132609.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978601|ref|ZP_04138974.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis Bt407] gi|228781097|gb|EEM29302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis Bt407] gi|228787705|gb|EEM35666.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326939691|gb|AEA15587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|206970894|ref|ZP_03231846.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|229109442|ref|ZP_04239036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15] gi|229178383|ref|ZP_04305752.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W] gi|206734530|gb|EDZ51700.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|228605113|gb|EEK62565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W] gi|228674009|gb|EEL29259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|59800884|ref|YP_207596.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA 1090] gi|240016201|ref|ZP_04722741.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA6140] gi|240080345|ref|ZP_04724888.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA19] gi|240112554|ref|ZP_04727044.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae MS11] gi|240117582|ref|ZP_04731644.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID1] gi|240123137|ref|ZP_04736093.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID332] gi|254493357|ref|ZP_05106528.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291] gi|268596491|ref|ZP_06130658.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19] gi|268598622|ref|ZP_06132789.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11] gi|268603285|ref|ZP_06137452.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1] gi|268681765|ref|ZP_06148627.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332] gi|59717779|gb|AAW89184.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA 1090] gi|226512397|gb|EEH61742.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291] gi|268550279|gb|EEZ45298.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19] gi|268582753|gb|EEZ47429.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11] gi|268587416|gb|EEZ52092.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1] gi|268622049|gb|EEZ54449.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332] Length = 389 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 1/235 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T++ D LK +I AND A+ +A+ L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+++LS + DFP+Y F IK + + + N N + Sbjct: 168 TVFKNPTGLGREGQVSTAKDLSLLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL+ Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRAL 282 >gi|262165190|ref|ZP_06032927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] gi|262024906|gb|EEY43574.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 69 LKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAE 125 +K L + ISKNA +P S+ F + G+T+ + + + +I++S ND VA+AE Sbjct: 6 VKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAE 65 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D P+ Sbjct: 66 HVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEY 125 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + G N N W + DG+KTG T +G+N+V+SA +G+ L+AV Sbjct: 126 AIYSEQKFTYNGITQYNRNGLLWD--KSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAV 183 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 ++G + N R S LLS GF Sbjct: 184 VMGTDNENARKAESKKLLSYGF 205 >gi|262172042|ref|ZP_06039720.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] gi|261893118|gb|EEY39104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 69 LKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAE 125 +K L + ISKNA +P S+ F + G+T+ + + + +I++S ND VA+AE Sbjct: 6 VKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAE 65 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D P+ Sbjct: 66 HVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEY 125 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + G N N W + DG+KTG T +G+N+V+SA +G+ L+AV Sbjct: 126 AIYSEQKFTYNGITQYNRNGLLWD--KSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAV 183 Query: 243 ILGALDRNTRNKVSASLLSMGF 264 ++G + N R S LLS GF Sbjct: 184 VMGTDNENARKAESKKLLSYGF 205 >gi|229079157|ref|ZP_04211706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2] gi|228704174|gb|EEL56611.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2] Length = 317 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FENASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|229127385|ref|ZP_04256380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|229144594|ref|ZP_04272996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST24] gi|296502572|ref|YP_003664272.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|228638834|gb|EEK95262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228656067|gb|EEL11910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|296323624|gb|ADH06552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 317 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|195941738|ref|ZP_03087120.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia burgdorferi 80a] gi|218249458|ref|YP_002375112.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7] gi|226321911|ref|ZP_03797437.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi Bol26] gi|218164646|gb|ACK74707.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7] gi|226233100|gb|EEH31853.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi Bol26] gi|312148150|gb|ADQ30809.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi JD1] gi|312149468|gb|ADQ29539.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi N40] Length = 396 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 30/288 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L +I N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++ Sbjct: 5 LFLIFFPFCYNLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIV 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSA 116 T Y +++ L + + IS +AS Y PP++S +KG + + LK L V S Sbjct: 64 TIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--S 174 ND ++AIAE + FV MN NLGL HF+ G TA DMA S Sbjct: 124 NDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKS 182 Query: 175 WRIKTDFPQYMH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTC 222 + K F +H YF + G + K K N N + + +DG+KTG+ Sbjct: 183 YIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIK 242 Query: 223 ASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 SG N+VA+A +G++ LIAV+LG R+ ++ +L GF Sbjct: 243 ESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 290 >gi|320354031|ref|YP_004195370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus DSM 2032] gi|320122533|gb|ADW18079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus DSM 2032] Length = 374 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 9/251 (3%) Query: 22 IAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +A ++ PY + L + ++G V+ E+ D PAS+ KLM YV+ +++ L Sbjct: 25 LAVISQDPYVSALVIEADSGKVLFESNADVKVYPASVLKLMDLYVILDRIEQGALKLDEM 84 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + ++ AS+ S +++ + L+V+SAND AVA+A + +++ FV MN Sbjct: 85 VPVTVEASKTGGSQVYLDPKEQFSVEELIYALMVQSANDAAVALATHIAGSKEGFVALMN 144 Query: 140 NTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHY--FQIKGL 193 ++ LG+ + F + HG+ Q TTARD+AIL + P+ + Y Q +G Sbjct: 145 QKAQALGMKHSVFHSVHGLPPSEGQEPDVTTARDLAILCREL-AKRPEALKYTGTQTRGF 203 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N N + G DG KTG+ A+GF+I A+A +G +I +++G+ DR R+ Sbjct: 204 REDKFIMRNHNKLLTQVPGCDGFKTGYYQAAGFSIAATAKKGGVRIITLVMGSKDRKVRD 263 Query: 254 KVSASLLSMGF 264 + LL+ GF Sbjct: 264 AKAVELLAKGF 274 >gi|228952354|ref|ZP_04114442.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807350|gb|EEM53881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 317 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K P+ +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|291532593|emb|CBL05706.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1] Length = 424 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 14/217 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + V+ D +PAS TK+MTA + + L P+ I+ A PS Sbjct: 60 LIDADDNGVLYGKDEDKIMHPASTTKIMTAILAL-----ESGKLDEPLVITPEAVNTEPS 114 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +TL AL +++ S ND AVA+A+++ + F + MN+ +K LG THF Sbjct: 115 SLGLRLGDKITLREALTGMMIVSGNDAAVAVAQTVAGSVPAFAKMMNDKAKELGAVNTHF 174 Query: 153 MNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIK----GKKYPNT--NW 205 +N HG+ GHY+TA DMAI+ S+ +K P++ K +K +Y T + Sbjct: 175 LNPHGLTAQGHYSTAHDMAIIASYAMKK--PEFREIVSKKAYNMKYMDGHTEYVTTTNRF 232 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 F GA+G+KTGFT A+G +VASA +G ++LIAV Sbjct: 233 LKSGFEGANGIKTGFTNAAGDCLVASATRGQKTLIAV 269 >gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] Length = 702 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 25/258 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + +D +TG V+ P+ P + AS TK+MTA++V L +T S A+ P Sbjct: 436 WVAIDADTGRVLGGREPERPLDMASTTKIMTAHLVLKELAAHPEARDEVVTFSARAAATP 495 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------------TEKKFVQHM 138 S+S ++G + + L L++ S ND AVA+AE + + FV M Sbjct: 496 GSSSEVREGERVRVGELLYGLMLPSGNDAAVALAEQFGQRLAARDGSDGLDPLEAFVAAM 555 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--------I 190 N ++ LGLSAT F+N HG+ H +A D+A L+ R+ + P++ I Sbjct: 556 NREAQALGLSATRFVNPHGLTAPNHQASALDLARLT-RVALENPEFAALVATRRRAARLI 614 Query: 191 KGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G E KG+ + NTN + G G+KTG T ++G +VA QG++ +I V+LG+ Sbjct: 615 DG-EGKGRTIVWSNTNELL-KIEGFAGVKTGTTSSAGACLVALGQQGERRVIVVVLGSAA 672 Query: 249 RNTRNKVSASLLSMGFYN 266 +R + +L F+ Sbjct: 673 SASRYADARNLFRWAFHQ 690 >gi|253577333|ref|ZP_04854650.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843233|gb|EES71264.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 469 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LL+ +G ++ + P PAS+TK+MT Y+V +K+ K +T+ +NA++ S Sbjct: 82 LLEPVSGQILLNVNGEQPLPPASMTKMMTEYIVAELVKQGKFSWDDVVTVGRNAAQTIGS 141 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + + SAND VA+AE + +E+ FV+ MN+ +K +G+ HF Sbjct: 142 RIFLAEGDQHTVEELYTAMAIASANDATVALAEYVAGSEQAFVKMMNDEAKRMGMKTAHF 201 Query: 153 MNAHGV----------VQHGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 N+ G+ G T +A D AIL+ I TD P + + I+ + + + Sbjct: 202 ANSTGLDIADMPAEFRPTDGKETVMSALDAAILAKYIVTDHPDFTRFTTIQSKKFRDRDT 261 Query: 201 P---NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G +A++ LI+V++G Sbjct: 262 APMVNLNWMLEANKNVTNFKQFAYEGLDGLKTGHTSNAGNCFTGTAVRNGMRLISVVMGT 321 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R + +L GF N Sbjct: 322 ASDKARFVETRKVLDYGFNN 341 >gi|114704618|ref|ZP_01437526.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Fulvimarina pelagi HTCC2506] gi|114539403|gb|EAU42523.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Fulvimarina pelagi HTCC2506] Length = 396 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 7/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ TG VI + P+ PASL KLMT +VF LK + ++T ++++A Sbjct: 39 PRALLVEDRTGTVILDKNASEPFAPASLAKLMTMEIVFEALKAGEISMSTEYAVTEHAWR 98 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +T S + + + ++ I++ AND A+ +AE + +E++F + MN ++ Sbjct: 99 TGGAPSGAATMFAAINSRIPVADLIRGTIIQGANDGAIILAEGMFGSEEEFTERMNARAE 158 Query: 144 NLGLSATHFMNAHGV-VQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 LGL T + N G+ + G TTARD+ L+ ++++ P+ + E Sbjct: 159 ELGLDDTRYANPTGLPTEEGEQQTTARDLVTLTRHLRSEHPELYKIYAEPAFEWNKIFQR 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + LG +G+ TG+T ASG++++ +A +G ++ + + G R + LL Sbjct: 219 NRNPVLREELGGEGVGTGYTEASGYSLMGAASKGGRTFLVALSGLESSAAREAEAQRLLE 278 Query: 262 MGF 264 GF Sbjct: 279 FGF 281 >gi|223889041|ref|ZP_03623632.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b] gi|223885857|gb|EEF56956.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b] Length = 388 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 30/288 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L +I N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++ Sbjct: 5 LFLIFFPFCYNLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIV 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSA 116 T Y +++ L + + IS +AS Y PP++S +KG + + LK L V S Sbjct: 64 TIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--S 174 ND ++AIAE + FV MN NLGL HF+ G TA DMA S Sbjct: 124 NDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKS 182 Query: 175 WRIKTDFPQYMH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTC 222 + K F +H YF + G + K K N N + + +DG+KTG+ Sbjct: 183 YIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIK 242 Query: 223 ASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 SG N+VA+A +G++ LIAV+LG R+ ++ +L GF Sbjct: 243 ESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 290 >gi|167898320|ref|ZP_02485721.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 7894] Length = 276 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---AS 87 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + + Sbjct: 59 WLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIASV 118 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG+ Sbjct: 119 GRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLGM 178 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N + Sbjct: 179 RDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLL 238 Query: 208 GTFLGADGMKTGFTCASGFNIVASA 232 G DGMKTG T A+G+ +V +A Sbjct: 239 GADPSVDGMKTGHTNAAGWCMVVTA 263 >gi|297170270|gb|ADI21307.1| D-alanyl-D-alanine carboxypeptidase [uncultured gamma proteobacterium HF0010_09F21] Length = 381 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L + T VIA + ASLTKLMT+YVV +K+ + TIS A + P Sbjct: 32 YILYEPTTDTVIASFNENESVEVASLTKLMTSYVVADQIKQGYISMEDEPTISVKAWQTP 91 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S ++G+ + + + +K +++ S ND +VA+AE + +E+ FV M+ + +LGL + Sbjct: 92 GSQMFIREGTKVKVSDLVKGMVIISGNDASVALAEHIAGSEENFVYLMDQYAVDLGLRNS 151 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNW 205 F N+ G+ + ++A D+A L+ I DFP + ++ K PN N Sbjct: 152 DFNNSSGLPDPNNVSSALDLAKLTGAIIRDFPDHYQIYKEKEFSYSAPGEYVAPQPNRNR 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + DG+KTG+T A+G +V S+ + D LIAV+LG+ Sbjct: 212 LLHLDDMFDGVKTGYTRAAGHCLVGSSTRDDMRLIAVVLGS 252 >gi|251797290|ref|YP_003012021.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] gi|247544916|gb|ACT01935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] Length = 425 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 16/239 (6%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G V+ A+N + + PAS+TK++T +V +++ T +T+SK A Sbjct: 59 LIDAKSGAVLFAKNETERLY-PASITKIVTGIIVL-----EQSNPTDIVTVSKTARGEDG 112 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + +G + + ++ +++ S ND A AIAE + T+++F + MN + LGL T+ Sbjct: 113 TRIYLAEGEQKPMLDLIEGMLINSGNDAATAIAEHIDGTKEQFAERMNEFVRKLGLWDTN 172 Query: 152 FMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWA 206 F+N G+ YTTARDMA I + ++ + Q+ K G+++ N N Sbjct: 173 FVNPSGLPDENQYTTARDMAKIAQYAMQNE--QFRQVVATKSKPWVGEEWVSKLENHNKM 230 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGF 264 +G++ GA G+K GFT A+G+ +V++A +GD LI VIL GA D ++ LL GF Sbjct: 231 LGSYDGAIGVKNGFTQAAGYTLVSAAQRGDMELIGVILKGATDSGVYKDMT-QLLDYGF 288 >gi|169831388|ref|YP_001717370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638232|gb|ACA59738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 366 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 LL+ +G ++ E P AS+TK+MT + L KA L I S++A+ Sbjct: 24 VLLEPVSGQILYEKEPYKEQPIASVTKIMTMLLAVEALDSGKAKLDDIIVTSEHAAGMGG 83 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S M+ L + SAND +VAIAE + +E+ FVQ MN+ + LG TH Sbjct: 84 SQIYLAPQEKMSFREMLISVATGSANDASVAIAEHVAGSEEAFVQMMNDRAAELGAKHTH 143 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGT 209 ++N G+ GHY+ A D A++ R +P + IK +++G ++ NTN + Sbjct: 144 YVNPTGLPAEGHYSCAYDQAVI-LREALKYPLFREVSAIKEYDLRGGEFKLWNTNKLLWW 202 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GAD KTG+T + + + +S + + LIAV+LG + + S L + GF Sbjct: 203 YPGADAGKTGWTNEAKYCLASSVKKDNLRLIAVVLGVPETKGHFRESIKLYNWGF 257 >gi|209885251|ref|YP_002289108.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5] gi|209873447|gb|ACI93243.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5] Length = 425 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 5/243 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ TG V+ E D P+S+ KLMTA V+F L + + LT IS+NA Sbjct: 66 PTAILIEAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAWR 125 Query: 87 -SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P ST S +++D+ L L ++S ND +A+AE +E FV M ++ Sbjct: 126 RGGAPSGGSTMFAAIHSIVSVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKMQARAR 185 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F N +G+ + + R++ L+ + +P F + + N Sbjct: 186 EIGLARSTFGNTNGLPDPDNKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKIRQQNR 245 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + + GADG+KTG+T GF +V SA+Q L+ V+ G D R + LL G Sbjct: 246 NPLLASLDGADGLKTGYTKEGGFGMVGSAVQNGTRLVVVVNGLSDAADRAAAAKRLLEWG 305 Query: 264 FYN 266 F N Sbjct: 306 FKN 308 >gi|160931733|ref|ZP_02079127.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753] gi|156869378|gb|EDO62750.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753] Length = 382 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 3/240 (1%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E AS+TK+MT +V + + + LT IT S++AS Sbjct: 36 PSAVLMEASTGKVLFEKNSHEVRACASITKVMTLLLVMEAIDQGRMSLTDTITASEHASS 95 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ + G TM+ D+ +K +V SAND AVA+AE L TE+ FVQ MN + LG+ Sbjct: 96 MGGSDIWLEPGETMSADDMVKATVVASANDAAVALAEHLEGTEEAFVQKMNQRAAELGMK 155 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWA 206 T F N +G+ + GH T+A D+A++S R + Y I L + NTN Sbjct: 156 DTVFKNCNGLDEEGHVTSAYDVALMS-RELIKHEKIFDYTTIWMDTLREGKTQIVNTNKL 214 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ++ G G+KTG T +G I A+A + SLI V+LG+ R +A+LL GF N Sbjct: 215 LKSYNGITGLKTGTTGGAGSCITATAQRDGLSLIGVVLGSATGKERFTDAAALLDYGFSN 274 >gi|530915|gb|AAA68436.1| Highly similar to the E.coli YeeC, DacA and DacC products; putative [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 281 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 25/231 (10%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 K+G +++ + + LIV S ND VA+A+ + + +FV MN+ K L L THF Sbjct: 3 LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETV 62 Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLG 212 HG+ G +++A D+A+LS I P++ H + K L G N N W + Sbjct: 63 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHI- 121 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------ 266 DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 122 -DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQI 180 Query: 267 -----KTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTTQKEI 303 K ++I Y K DF+ E+P+I + +KE+ Sbjct: 181 LHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 231 >gi|325132290|gb|EGC54983.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M6190] Length = 389 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPSDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ TR ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLL 278 >gi|134300784|ref|YP_001114280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134053484|gb|ABO51455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 397 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 127/245 (51%), Gaps = 14/245 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ P AS TK+MTA V L + ++S+ A+ S Sbjct: 67 VMDAATGQVLFAKNPHQARAIASTTKIMTALVAIEC-----GNLNSATSVSQRAAGVEGS 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K +TL+ L +++S ND VAIAE + E FV MN ++ LG THF Sbjct: 122 SVYLKPNEKLTLEQLLYGALMRSGNDACVAIAEQIAVREDIFVGFMNMKARQLGAKNTHF 181 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVG 208 N++G+ HY++A D+A+++ R P + K I G + NTN + Sbjct: 182 CNSNGLPNDHHYSSAYDLALIT-RAALKNPVFSRIVSTKTHVIPGTEGKRLLSNTNKMLW 240 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 ++ GADG+KTG T A+G +V+SA + + LIAV+L + DR S LL+ GF N+ Sbjct: 241 SYQGADGVKTGTTNAAGKCLVSSASRDGRRLIAVVLHSDDRWNE---SIKLLNYGF-NRF 296 Query: 269 DRKKI 273 +++++ Sbjct: 297 EQRRV 301 >gi|94496388|ref|ZP_01302965.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58] gi|94424134|gb|EAT09158.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58] Length = 387 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 129/271 (47%), Gaps = 18/271 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++A +++ P+ T + P + D ++G V+ + + PAS+ K+MTA+V F Sbjct: 13 LVAQPVIAAAPPY-----TTEAPIAYMKDLSSGAVLYDKGGETRIPPASMAKMMTAHVAF 67 Query: 67 SFLKEKKAMLTTPITISKNASEY---PPSNST--FKKGSTMTLDNALKLLIVKSANDIAV 121 +++ L T T+ + P + ST G ++++N L ++ S ND V Sbjct: 68 RLIQKGDLKLDTKFTVRPETWQQWHGPKAGSTMFLSAGEQVSVENLLHGIVTLSGNDACV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTD 180 +AE + TE+ FV MN K LGL +HF ++G G Y TA D+A L+ + Sbjct: 128 VLAEGIAGTEQAFVALMNEEGKRLGLKNSHFGTSNGWPDEGVTYVTAEDLATLAQATIEE 187 Query: 181 FPQ-YMHYFQIK----GLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 P Y ++ K G + G + N N +G GADG+KTG T +G+ SA Sbjct: 188 TPDLYKRFYATKSFTWGQTMGGSAIEQANRNPILGKIAGADGLKTGHTEEAGYGFTGSAE 247 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 Q + L+ V+ G N R K S + GF Sbjct: 248 QDGRRLVMVVAGLNSFNGRIKESVRFMDWGF 278 >gi|229170094|ref|ZP_04297784.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228613378|gb|EEK70513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 425 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 285 ERFTESRALIEYGFNN 300 >gi|229087877|ref|ZP_04219989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228695432|gb|EEL48305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 426 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 137/300 (45%), Gaps = 36/300 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+ L I+ +LS F L + ++ + L D +TG ++ E PD Sbjct: 3 MRKILSILLAFLLS--FSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 61 ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELYH 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGH 163 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ +H Sbjct: 121 SIVIFSANGSSIALAELLAGSEKNFLNLANEYAKKLGLKKYKFVNATGLNNADLKGKHPE 180 Query: 164 YT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNW----A 206 T +ARDM ILS I T +P+ + + K + N NW A Sbjct: 181 GTDPNGENSLSARDMGILSKIIITKYPEMLADTKQRFRNFPDNHPKPIRMENWNWMLPGA 240 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300 >gi|254670388|emb|CBA05903.1| putative penicillin-binding protein precursor [Neisseria meningitidis alpha153] Length = 389 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + +++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + G T+ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ R ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIRASDNSKLL 278 >gi|77464119|ref|YP_353623.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter sphaeroides 2.4.1] gi|77388537|gb|ABA79722.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter sphaeroides 2.4.1] Length = 355 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 41/264 (15%) Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 P PAS++KLMT ++F L++ + + T +S A + S ++ T++ + Sbjct: 14 EPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELI 73 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +IV S ND V +AE L TE F + M +K LG++ + F N+ G GH + Sbjct: 74 HGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVH 133 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------------YPNTNWAVGTFLGADG 215 D+ IL+ R+ +FP++ YF K + PN +W ADG Sbjct: 134 DLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWT------ADG 187 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--- 272 +KTG T +G+ +V SA+Q D I +L G + DR + Sbjct: 188 LKTGHTQEAGYGLVGSAVQKDGRRIVFVL-----------------TGLATEADRAQEGE 230 Query: 273 --INYIIKDFYQQNLSNEVPNISE 294 +N+ + F Q+ L + ++E Sbjct: 231 QIVNWAFRQFVQKTLVTKGQRVTE 254 >gi|163943071|ref|YP_001647955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163865268|gb|ABY46327.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 423 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 283 ERFTESRALIEYGFNN 298 >gi|146296825|ref|YP_001180596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410401|gb|ABP67405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 452 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 38/257 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG ++ + P+ PAS TK++TA V S KEK L +SKNA P Sbjct: 49 LIEANTGQILFQKNPNSRCFPASTTKILTALVALS--KEKD--LDKLFKVSKNAIMIEPG 104 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ +G T++ +AL +++ SAND A IAE++ + ++FV+ MN ++N+G + Sbjct: 105 SSSYYLNEGETISFQDALYAMLLISANDAANVIAENISGSIQEFVKEMNQFAQNIGAKDS 164 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKT----DFPQYMHYFQ 189 HF+N G+ HYTTA D+++++ ++I T P + + Sbjct: 165 HFVNPSGLHNPQHYTTAYDLSLIARQAYKNETLRKIVSTVEYKITTASMHKKPDWQIIYN 224 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 I L K KY + A+GMKTG+T + ++ASA + D LIAVIL + D Sbjct: 225 INKLLRKNSKY--------YYPYANGMKTGYTAQAKRCLIASAKKDDIDLIAVILSSDDA 276 Query: 250 NTRNKVSASLLSMGFYN 266 + LL GF N Sbjct: 277 FAD---AIKLLDYGFNN 290 >gi|260892123|ref|YP_003238220.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex degensii KC4] gi|260864264|gb|ACX51370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex degensii KC4] Length = 392 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 13/238 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ P+ PAS TK++TA VV + ++ +P + S Sbjct: 35 LMEAETGQILYAKNPEERMYPASTTKILTALVVLQHARLNDQIVASPEAVGTEGS----- 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K+G +++ +AL L++ SAND+AVA+A+ + + F Q MN T++ G +++HF Sbjct: 90 SIWLKEGEKLSVKDALYALLLNSANDVAVALAQKVSGSIPAFAQLMNETARACGATSSHF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWA 206 N HG+ HYTTA D+A ++ R+ + K P N N Sbjct: 150 TNPHGLPDPEHYTTALDLARIT-RVALGNRLFREIVATKTYTFHRPTLPEPFVLVNHNKL 208 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + GA G+KTG+T A+G +VA+A + + LIAVIL + N + LL GF Sbjct: 209 LWRYEGAIGVKTGYTTAAGQCLVAAAQRNGRELIAVILKSEGTEVWND-AVKLLDYGF 265 >gi|225552024|ref|ZP_03772964.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1] gi|225371022|gb|EEH00452.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1] Length = 405 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 30/288 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L +I N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++ Sbjct: 14 LFLIFSPFCYNLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIV 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSA 116 T Y +++ L + + IS +AS Y PP++S +KG + + LK L V S Sbjct: 73 TIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSG 132 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--S 174 ND ++AIAE + FV MN NLGL HF+ G TA DMA S Sbjct: 133 NDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKS 191 Query: 175 WRIKTDFPQYMH---YFQIK-----GLEIKGK----KYPNTNWAVGTFLGADGMKTGFTC 222 + K F +H YF G + K K N N + + +DG+KTG+ Sbjct: 192 YIEKFKFMLNIHSLKYFIYPKSKNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIK 251 Query: 223 ASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 SG N+VA+A +G++ LIAV+LG R+ ++ +L GF Sbjct: 252 ESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|229136205|ref|ZP_04264956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228647258|gb|EEL03342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 425 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 122/256 (47%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 285 ERFTESRALIEYGFNN 300 >gi|225548661|ref|ZP_03769708.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a] gi|225370691|gb|EEH00127.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a] Length = 405 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 30/278 (10%) Query: 15 NIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++T Y + Sbjct: 24 NLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAE 82 Query: 71 EKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ L + + IS +AS Y PP++S +KG + + LK L V S ND ++AIAE Sbjct: 83 KRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEF 142 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQY 184 + FV MN NLGL HF+ G TA DMA S+ K F Sbjct: 143 VVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKSYIEKFKFMLN 201 Query: 185 MH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +H YF + G + K K N N + + +DG+KTG+ SG N+VA+A Sbjct: 202 IHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATA 261 Query: 233 IQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 +G++ LIAV+LG R+ ++ +L GF Sbjct: 262 KKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|327461601|gb|EGF07932.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1] gi|327473321|gb|EGF18741.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK408] Length = 455 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 33 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 92 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 93 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 152 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 153 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 212 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ ++Y + +K G Y T N+++ G DGMKTG + Sbjct: 213 ILAYNFVNHHPEILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 272 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ + DQ +IAVI+G D Sbjct: 273 NGAFNYIATIKREDQRMIAVIMGVGD 298 >gi|229014554|ref|ZP_04171670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|228746706|gb|EEL96593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 425 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 285 ERFTESRALIEYGFNN 300 >gi|224533632|ref|ZP_03674221.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi CA-11.2a] gi|225549566|ref|ZP_03770532.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 118a] gi|224513305|gb|EEF83667.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi CA-11.2a] gi|225369843|gb|EEG99290.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 118a] Length = 405 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 30/278 (10%) Query: 15 NIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++T Y + Sbjct: 24 NLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAE 82 Query: 71 EKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ L + + IS +AS Y PP++S +KG + + LK L V S ND ++AIAE Sbjct: 83 KRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEF 142 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQY 184 + FV MN NLGL HF+ G TA DMA S+ K F Sbjct: 143 VVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKSYIEKFKFMLN 201 Query: 185 MH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +H YF + G + K K N N + + +DG+KTG+ SG N+VA+A Sbjct: 202 IHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATA 261 Query: 233 IQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 +G++ LIAV+LG R+ ++ +L GF Sbjct: 262 KKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|216264541|ref|ZP_03436533.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 156a] gi|224532771|ref|ZP_03673388.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi WI91-23] gi|226320832|ref|ZP_03796385.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 29805] gi|215981014|gb|EEC21821.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 156a] gi|224512389|gb|EEF82773.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi WI91-23] gi|226233774|gb|EEH32502.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 29805] Length = 405 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 30/278 (10%) Query: 15 NIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++T Y + Sbjct: 24 NLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAE 82 Query: 71 EKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ L + + IS +AS Y PP++S +KG + + LK L V S ND ++AIAE Sbjct: 83 KRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEF 142 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQY 184 + FV MN NLGL HF+ G TA DMA S+ K F Sbjct: 143 VVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKSYIEKFKFMLN 201 Query: 185 MH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +H YF + G + K K N N + + +DG+KTG+ SG N+VA+A Sbjct: 202 IHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATA 261 Query: 233 IQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 +G++ LIAV+LG R+ ++ +L GF Sbjct: 262 KKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|15594950|ref|NP_212739.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia burgdorferi B31] gi|2688537|gb|AAC66969.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia burgdorferi B31] Length = 405 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 30/278 (10%) Query: 15 NIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++T Y + Sbjct: 24 NLFA-VNLAEINKLSEYAKSIVLIDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAE 82 Query: 71 EKKAMLTTPITISKNASEY--PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ L + + IS +AS Y PP++S +KG + + LK L V S ND ++AIAE Sbjct: 83 KRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEF 142 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQY 184 + FV MN NLGL HF+ G TA DMA S+ K F Sbjct: 143 VVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKSYIEKFKFMLN 201 Query: 185 MH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +H YF + G + K K N N + + +DG+KTG+ SG N+VA+A Sbjct: 202 IHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATA 261 Query: 233 IQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 +G++ LIAV+LG R+ ++ +L GF Sbjct: 262 KKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|194367412|ref|YP_002030022.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] gi|194350216|gb|ACF53339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] Length = 298 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 10/214 (4%) Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNAL 108 PASLTKLMTAY ++ L+E +TI+ + T G ++L L Sbjct: 68 QPASLTKLMTAYAAYACLEEGGRTWDEAVTIAAEDVHVVADDETRMGLVPGEKVSLARLL 127 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + L++ S ND A+AIA L ++ F+ MN ++ LGL +T F + G+ H ++AR Sbjct: 128 EGLMIVSGNDAALAIARHLDGSQSAFLDRMNQHARQLGLRSTWFASVSGITTPHHASSAR 187 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 DMA+L+ + D PQ + + N N +G G DG+KTG+T A+GF + Sbjct: 188 DMAVLAACLLNDHPQILAVTAQRAFAHGSFSRNNQNALLGDD-GVDGLKTGYTQAAGFCL 246 Query: 229 VASAIQGDQS------LIAVILGALDRNTRNKVS 256 A+A Q LI V+LG+ R+ R+ ++ Sbjct: 247 AATACQPVPGRAHPVRLITVVLGSDSRDARDALA 280 >gi|329929810|ref|ZP_08283486.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328935788|gb|EGG32249.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 394 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 123/243 (50%), Gaps = 23/243 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G ++ D ASLTK+MTA V K L + +SKNA Sbjct: 45 ALIDVTSGRMLYSKNGDERLRIASLTKIMTAIVAIEHGK-----LDDRVKVSKNAFAKEG 99 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K G MTL+N L L+++S ND A AIAE + TE+ FV MN + +LG++ +H Sbjct: 100 SSIFLKLGEEMTLENLLYGLMLRSGNDAATAIAEHVGGTEEGFVLLMNEKAASLGMTNSH 159 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----- 205 FMN HG+ HY++A D+A L ++ +K + +I K PN W Sbjct: 160 FMNPHGLDHDEHYSSAHDVAKLTAYALKNPV-----FSEIVKTPTKKAPNPNEAWDYKWD 214 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + + GADG+KTG+T + +V+SA + Q + AV L D N N S ++L Sbjct: 215 NKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRNGQQIAAVTLN--DGNDWNDHS-NMLD 271 Query: 262 MGF 264 GF Sbjct: 272 YGF 274 >gi|261406005|ref|YP_003242246.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261282468|gb|ACX64439.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 394 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 123/243 (50%), Gaps = 23/243 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G ++ D ASLTK+MTA V K L + +SKNA Sbjct: 45 ALIDVTSGRMLYSKNGDERLRIASLTKIMTAIVAIEHGK-----LDDRVKVSKNAFAKEG 99 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K G MTL+N L L+++S ND A AIAE + TE+ FV MN + +LG++ +H Sbjct: 100 SSIFLKLGEEMTLENLLYGLMLRSGNDAATAIAEHVGGTEEGFVLLMNEKAASLGMTNSH 159 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----- 205 FMN HG+ HY++A D+A L ++ +K + +I K PN W Sbjct: 160 FMNPHGLDHDEHYSSAHDVAKLTAYALKNPV-----FSEIVKTPTKKAPNPNEAWDYKWD 214 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + + GADG+KTG+T + +V+SA + Q + AV L D N N S ++L Sbjct: 215 NKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRNGQQIAAVTLN--DGNDWNDHS-NMLD 271 Query: 262 MGF 264 GF Sbjct: 272 YGF 274 >gi|148553407|ref|YP_001260989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] gi|148498597|gb|ABQ66851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] Length = 392 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 14/250 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L D ++G ++ PD PAS+ K+MT YV F +++ + L T+ + Sbjct: 32 PVAFLKDLSSGAILYAKNPDLRMPPASMAKMMTVYVAFDLIQKGELKLDAMATVRPETWK 91 Query: 89 Y---PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P + ST G +++ N L ++ S ND V +AE + TE+ FV MN +K Sbjct: 92 QWHGPAAGSTMFLSPGEQVSVANLLFGIVTLSGNDACVVLAEHISGTEQAFVALMNRRAK 151 Query: 144 NLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKG 197 +GL+ +HF ++G G Y TARD+A L+ + + P+ F + G + G Sbjct: 152 EMGLTNSHFGTSNGWPDGGATYVTARDLATLAEKTIEEHPKLYKTFYSRPSFTWGKTMGG 211 Query: 198 KK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N + +G GADG+KTG T +GF SA Q + L+ V+ G N R Sbjct: 212 GQDITQANRDPLLGRVAGADGLKTGHTEEAGFGFTGSAEQNGRRLVMVLSGLTSFNQRID 271 Query: 255 VSASLLSMGF 264 S S ++ GF Sbjct: 272 QSVSFMNWGF 281 >gi|327489460|gb|EGF21253.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1058] Length = 451 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D +TG V+ E+ D +PAS++KLMT Y+VF +KE Sbjct: 29 MAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKE 88 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T IT + A+ Y SN+ G T+ + + IV S+N V +A L Sbjct: 89 GKISEKTVITATPQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYL 148 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+A Sbjct: 149 SDNDPDAFLDRMNAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQTTARDLA 208 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL++ P+ + Y + +K G Y T N+++ G DGMKTG + Sbjct: 209 ILAYNFVNHHPEILDYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ + DQ +IAVI+G D Sbjct: 269 NGAFNYIATIKREDQRMIAVIMGVGD 294 >gi|321472931|gb|EFX83900.1| hypothetical protein DAPPUDRAFT_315307 [Daphnia pulex] Length = 285 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 4/167 (2%) Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G T++L + L+ +IV+S ND + + E L +E+ FV MN +K LG THF+N+ G Sbjct: 6 GGTVSLSDLLQGIIVQSGNDACIVVTEGLAGSEENFVSQMNQKAKELGAINTHFLNSTGW 65 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM 216 + GH +T RD+ + R DFP++ ++Y Q++ G + N N + LG DG+ Sbjct: 66 PERGHTSTPRDLMLFGIRTIRDFPEFYKIYYSQLE-FTYNGIRQNNRNPLLYNKLG-DGL 123 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 KTG T GF + S +GD+ LI VI G + TR + ++ +L+ G Sbjct: 124 KTGHTDEGGFGLAGSGQRGDRRLIFVINGLKNDKTRAETASKMLNYG 170 >gi|83590204|ref|YP_430213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83573118|gb|ABC19670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 385 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 137/263 (52%), Gaps = 18/263 (6%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 LS I P + A + Y L+D TG V+ P H P ++T +T + L + Sbjct: 20 LSFIKPGRAAAPDIQAESYVLMDFRTGQVLMAKNP-HERRPQAITTKITT----AILALE 74 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + L + SKNA+E P S+ ++G T+TL+ L L+++SAND AVAIAE + + + Sbjct: 75 RGNLNDQVIASKNAAETPESSIYLQEGETLTLEELLYALLLRSANDAAVAIAEHIGGSVE 134 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + MN + +G TH++N HG+ HY++A D+A++ R P++ + Sbjct: 135 NFARMMNAKVQEIGARDTHYVNPHGLTAPDHYSSAYDLALIG-RYAMMNPKFREIVATRQ 193 Query: 193 --LEIKGKKYP----NTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + GK +P N N W + GADG+K G+T +G +VASA + + LIAV+ Sbjct: 194 RIIPWAGKPWPRLLINENRLLWGYYAYPGADGVKNGYTTPAGQVLVASATRDNWRLIAVV 253 Query: 244 LGALDRNTRNKVSASLLSMGFYN 266 + + N + SA +L GF N Sbjct: 254 MKS--PNMYRETSA-ILDYGFNN 273 >gi|310644848|ref|YP_003949607.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] gi|309249799|gb|ADO59366.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] Length = 313 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 21/253 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ + D P A+++KLMT +V ++ + + IS+ AS Sbjct: 42 LMDMHTGELLMDVNGDKPMPSANMSKLMTELLVLEDIRTGRLGWNDEVRISRYASTVGGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 N + + G MT+ + ++V SAND AVA+AE E FV+ MN + +GLS + Sbjct: 102 NLSLRYGERMTVSELFQSMVVYSANDAAVALAERSSGNEYAFVKRMNEKAAQIGLSPDSR 161 Query: 152 FMNAHGVVQ-----------HGHY-TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 F NA G Q G TA D A L+ + T P+ + +E+K K Sbjct: 162 FSNASGAGQSELGPNHPKDIRGETKMTASDTAKLASYLITSHPEILRTSSRTQMELKDKG 221 Query: 200 --YPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTNW + ++ G DG+K G+T +G+ +A Q + L+AV+LGA + Sbjct: 222 IYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDAGYCFTGTAEQHGKRLVAVVLGAPSKEE 281 Query: 252 RNKVSASLLSMGF 264 R + + L GF Sbjct: 282 RFEQTRKLFDYGF 294 >gi|169832020|ref|YP_001718002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638864|gb|ACA60370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 400 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 138/273 (50%), Gaps = 23/273 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTK 58 FL++I + L P A+ + P T L+D +TG + E D PAS TK Sbjct: 8 FLILIPLCFL----PAAGGAQAGE-PEITGEAAVLMDLDTGRFLYEKNADRVMYPASTTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++TA V ++ + +T+S+NA S G +L+ L ++ SAND Sbjct: 63 ILTALVA---VRNGYDRMDDRVTMSENAVYAGGSAIWSAPGEEFSLEELLWSALLGSAND 119 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE LC + ++F MN ++ LG THF+N HG+ HYTTARD+A+++ R Sbjct: 120 AATAVAEHLCGSVEEFSAAMNAEARRLGAWNTHFVNPHGLHDERHYTTARDLALIA-RAA 178 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP-------NTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + P K ++ + P NTN + + GA G+KTG+T +G +VA+ Sbjct: 179 LNEPLIREMAGTKTYQLS-RADPDALSLLVNTNKLLWRYEGAIGLKTGYTSQAGQCLVAA 237 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A + ++++AV+L + N S +LL+ GF Sbjct: 238 AERNGRTVLAVVLKSEGNNIWTD-SIALLNYGF 269 >gi|304387808|ref|ZP_07369982.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ATCC 13091] gi|304338073|gb|EFM04209.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ATCC 13091] Length = 389 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 1/231 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D + ++ + P PA+LT+LMTAY+VF +K + I ++A Sbjct: 48 HIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASE 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSA 149 S + T++ D LK +I SAND A+ +A L + FVQ MN ++ LG+ Sbjct: 108 GSRMFVRPCDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKN 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ + G +TA+D+A+LS + DFP+Y F IK + K + N N + Sbjct: 168 TVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYR 227 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G+K G T + G+N+ S + ++ + LG+ R ++ LL Sbjct: 228 DNNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIRASDNSKLL 278 >gi|329930179|ref|ZP_08283792.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5] gi|328935201|gb|EGG31682.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5] Length = 472 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +NA + S Sbjct: 86 LIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKTVGS 145 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + +E +FV MN+T+K +GL F Sbjct: 146 RIFLAEGDQHTVEELYIAMAVGSANDATVALAEHIAGSEAEFVTMMNDTAKKMGLKTAFF 205 Query: 153 MNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +N+ G+ + +A D A+L+ I D P + + I+ + + + Sbjct: 206 INSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFARFTAIQSHKFRPRDT 265 Query: 201 P---NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T A+G+ +A + LI+V++G Sbjct: 266 SPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVVMGT 325 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R K + +L GF N Sbjct: 326 KSEGARFKETKKVLDYGFDN 345 >gi|308270080|emb|CBX26692.1| hypothetical protein N47_A07210 [uncultured Desulfobacterium sp.] Length = 370 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 19/240 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ PD PAS TKLMTA V + A L +T+SK AS P Sbjct: 68 MDVTTGKILYAKNPDLKCFPASTTKLMTAIVSI-----ENADLNNLVTVSKTASNVSPHK 122 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + FK G +T++ L +V SAND AVA+AE + + FV+ MN + +G S T F+ Sbjct: 123 AGFKAGDKVTVEKLLYAALVGSANDAAVALAEGVSGSVDGFVELMNKKAVAIGASNTRFI 182 Query: 154 NAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTN--- 204 N +G+ G Y TA D++ IL + ++ +P+ + +I L+ NTN Sbjct: 183 NPNGLPGPGQYITASDLSKILQYALR--YPKLREIIGTRFAEITTLDGMPIHLKNTNKLL 240 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 W+ +G KTG+T +G V +A + + +I +LG+ R K S +L++ GF Sbjct: 241 WSDEEVIGG---KTGYTRRAGHCFVGAAERENDKIIIALLGSPSRKDLWKQSETLIAKGF 297 >gi|221632467|ref|YP_002521688.1| penicillin-binding protein dacF [Thermomicrobium roseum DSM 5159] gi|221157156|gb|ACM06283.1| penicillin-binding protein dacF precursor [Thermomicrobium roseum DSM 5159] Length = 503 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 15/217 (6%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 +G V+ PD P PASLTKL TA L + +LT + E S+ + Sbjct: 22 SGRVLYAKEPDAPRAPASLTKLATALTAVE-LAPRDTVLT--VQAQDLVGE---SSMGLR 75 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------KFVQHMNNTSKNLGLSA 149 G +TL+ AL L++ S ND A+ IA +L +FV+ MN ++ LGL Sbjct: 76 PGEQITLEAALYGLLLASGNDAAMTIARNLSGLPGDTPEAAVNRFVKQMNLLAQRLGLER 135 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N HG+ Q GH TTARD+A+L+ R P+ Q + TN +G Sbjct: 136 TTFRNPHGLDQEGHVTTARDLALLT-RAVLQRPELRRILQTPSYDDGVHAVQTTNRLLGR 194 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G G KTG T A+G++++ +A + ++I V+LG+ Sbjct: 195 YPGLIGGKTGITEAAGYSLIEAAERDGTTVIVVVLGS 231 >gi|229190080|ref|ZP_04317086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 10876] gi|228593409|gb|EEK51222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 10876] Length = 317 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I + + + PAS++K+MTAY++ + K + +S A++ + Sbjct: 70 IIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDSVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K L +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQLKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G ++ R + L+ Sbjct: 250 LNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSNKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|313901924|ref|ZP_07835342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467819|gb|EFR63315.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 25/244 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ D AS TK+MTA L ++ L IT S+ A S Sbjct: 84 LVDAATGQVLYARNADATMPMASTTKIMTA-----LLAIERGDLQQVITTSQRAFGVEGS 138 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TL+ L L+++S ND AVAIAE L + + FVQ MN ++ LGL T F Sbjct: 139 SLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVQWMNQRARELGLEHTRF 198 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-------- 204 + HG+ HYT+ARD+A L+ R+ P + + + +P N Sbjct: 199 ADPHGLASRDHYTSARDLATLA-RVALANPTFRRVVGTREYRM---PWPEKNSERVLYNH 254 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W + GA G+K G+T A+ +VASA +G L+ V+LGA + A+L+ Sbjct: 255 NRFLW---RYDGATGVKNGYTSAARGALVASAQRGGVELVGVLLGAHPTGMYRDM-AALM 310 Query: 261 SMGF 264 GF Sbjct: 311 DWGF 314 >gi|291532362|emb|CBL05475.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1] Length = 376 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 127/265 (47%), Gaps = 16/265 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PD PAS TK+MT L + A + + K A S Sbjct: 35 LIDATTGRVLYEKNPDAKAMPASTTKMMTC-----ILGLENANDDDIVEVDKRAVGVEGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATH 151 +G + + L+ ++ S ND A AIA + K + FVQ MN+ +K +G + TH Sbjct: 90 AIYINEGDKIKMSELLQATMLASGNDGAAAIAYYVGKGSLETFVQMMNDKAKEIGATNTH 149 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTN 204 F N HG+ HYTTARD+A ++ R ++ K EI + Y +TN Sbjct: 150 FNNPHGLTDPNHYTTARDLAKIA-RYAYQNEKFRKIVSTKEQEIQWVNPAERKDIYGSTN 208 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G+KTG+T A+G +VASA + +LIAV+L D R +LL GF Sbjct: 209 RLLWNYDDVTGIKTGYTDAAGGCLVASAQKNGITLIAVVLKTSDSRARFVEGRALLDYGF 268 Query: 265 YNKTDRKKINY--IIKDFYQQNLSN 287 + + K ++ +I Y N +N Sbjct: 269 KHIKEMKTVDEQKLISSIYTHNSTN 293 >gi|88607085|ref|YP_505745.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma phagocytophilum HZ] gi|88598148|gb|ABD43618.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma phagocytophilum HZ] Length = 386 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 2/220 (0%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P+ + + + ++ E+ D P AS++KLMT Y+V LK L + +S+ A Sbjct: 33 KAPHAIVFEWGSKTILFEHDVDAPTPTASMSKLMTLYIVLKNLKAGNIKLEDNLRVSEGA 92 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + + K G +++++ +K V S ND + +AE L +++KFV+ MN +K L Sbjct: 93 ASAGAPTAFLKTGQLISVNDLIKGAAVASGNDACITLAEGLYTSQEKFVEEMNRVAKELD 152 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNW 205 L + F+N G + + RD+ ILS RI DFP+Y ++F K G + Sbjct: 153 LKNSRFVNVTG-WPDDNMMSVRDLLILSARILQDFPEYYYFFGEKQFTYNGITQKNYNAL 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + DG+KTG T G+ +VASA++ + ++ VI G Sbjct: 212 LNYNNIEVDGIKTGHTRTGGYGMVASALKDGRRVLVVING 251 >gi|229065037|ref|ZP_04200334.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228716242|gb|EEL67956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 425 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 285 ERFTESRALIEYGFNN 300 >gi|253576372|ref|ZP_04853702.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844265|gb|EES72283.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 399 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 20/223 (8%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G ++ + D ASLTK+MTA V K L+ +T+ KNA Sbjct: 46 AVIDVTSGRLLYSLHGDDELPIASLTKIMTAIVAIEHGK-----LSDMVTVGKNAYGKEG 100 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ G M+L+N L L+++S ND A AIAE + +E+ FV MN +K LGL+ TH Sbjct: 101 SSLYLHLGEEMSLENMLYGLMLRSGNDAATAIAEHVGGSEEGFVYLMNEKAKLLGLTHTH 160 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----- 205 F N HG+ GHY++A D+A L S+ +K H+ +I K PN W Sbjct: 161 FQNPHGLDAKGHYSSANDLAKLTSYALKNP-----HFKEIVRTPSKTAPNPNDPWDYKWL 215 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTG+T + +V+SA + Q + V L Sbjct: 216 NKNKMLRFYDGADGVKTGYTKTARRCLVSSATRNGQQIAVVTL 258 >gi|121533591|ref|ZP_01665418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121307582|gb|EAX48497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 384 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 18/243 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ + PAS TK++TA + + L + +S A+ S Sbjct: 36 LMDAKTGQVLYDKDMHKRSAPASTTKILTAIIAI-----ESGRLDEVVRVSPRAAGTGGS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+TL + L+++S ND AVAIAE L + + F MN ++ +G +HF Sbjct: 91 SMNLYAGQTLTLRELVTGLMLRSGNDAAVAIAEHLAGSVEAFAAVMNKRAQEIGAVNSHF 150 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY-------MHYFQIKGLEIKGKKYPNT 203 +N HG+ GH++TA D+A L+ T+ F Q + + G E + + NT Sbjct: 151 VNPHGLTAPGHFSTAFDLAWLARYALTNPVFGQIVSTKETTIEWLDRSGRE-RDRNLRNT 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + ADG+KTG T +G +VASA +G+Q LIAV+ L + R S LL G Sbjct: 210 NKLLWMLEEADGVKTGTTSEAGPCLVASATRGNQRLIAVV---LHDHARWYNSMMLLKHG 266 Query: 264 FYN 266 F N Sbjct: 267 FDN 269 >gi|20807406|ref|NP_622577.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20515927|gb|AAM24181.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 416 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 32/273 (11%) Query: 16 IFPFLSI---AETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +F FLS+ AET + P L+D TG V+ + PAS TK++TA + Sbjct: 13 VFAFLSVPAHAETPQPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIAL- 71 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K L +T S+N ++ ++ G +TL+ L L+++SAND A+AIAE + Sbjct: 72 ----EKGKLDDVVTCSENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEHI 127 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--- 184 + + F + MN ++ +G +HF+N +G+ HY+T DMA ++ R ++ Sbjct: 128 GGSVENFAKMMNEKAREIGAYNSHFVNPNGLPDENHYSTPYDMAQIA-RYAMQNAEFRKI 186 Query: 185 ---MHYFQIKGLEIKGKKYPNTNWAVGTFL--------GADGMKTGFTCASGFNIVASAI 233 +HY QI K P W L GADG+KTG+T A+G +VASA Sbjct: 187 VSTLHY-QIPPTNKFDK--PRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASAT 243 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + LI+VI+G N + LL GF N Sbjct: 244 RDGHRLISVIMGDEGINIWTD-TIKLLDYGFQN 275 >gi|297617197|ref|YP_003702356.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297145034|gb|ADI01791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 401 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 134/282 (47%), Gaps = 24/282 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKL---PY-----YTLLDTNTGHVIAENYPDHPWNPASLTK 58 +I +L+ F L I K PY Y L+D TG V+ P AS TK Sbjct: 29 VIGFLVLALTFALLFILSPGKAEAAPYVTSQAYCLVDLTTGQVLGGKNVMQPRPVASTTK 88 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + + K+ + +P + S + MT+++ LK +++SAND Sbjct: 89 VMTAILALEYAGLKEVAVVSP------KAARTESGMGLRPQDKMTIEDLLKAALLESAND 142 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +V +AE + +E F MN + +G THF NA G+ H +T D+A+++ R Sbjct: 143 ASVVLAEHVAGSEDMFAYLMNKKAWAIGAYHTHFENASGLPDKEHLSTCYDLAVIT-RYA 201 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + IK YP NTN +G++ GA G+KTG T A+G ++ +A Sbjct: 202 LRNQVFEKLVATRQAVIKQPGYPGGRKIYNTNKLLGSYEGAFGVKTGTTDAAGKCLIGAA 261 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +G++ L+AV+L + DR + LL GF + T K ++ Sbjct: 262 QRGNRKLVAVVLRSWDRYADCQ---RLLDWGFTSFTREKVVD 300 >gi|118477901|ref|YP_895052.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str. Al Hakam] gi|118417126|gb|ABK85545.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] Length = 450 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 27/266 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V ++ K + IS+ A + Sbjct: 72 LVEANSGKILYEKNADELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQD 131 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 132 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 191 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 192 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 251 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G +A + LI+V++ Sbjct: 252 FQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIK 311 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRK 271 A R + L GF N RK Sbjct: 312 ANSHAARFDETKKLYDYGFANFEVRK 337 >gi|225864479|ref|YP_002749857.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102] gi|225790585|gb|ACO30802.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102] Length = 424 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 27/266 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V ++ K + IS+ A + Sbjct: 46 LVEANSGKILYEKNADELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 166 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G +A + LI+V++ Sbjct: 226 FQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRK 271 A R + L GF N RK Sbjct: 286 ANSHAARFDETKKLYDYGFANFEVRK 311 >gi|229184724|ref|ZP_04311923.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|228598738|gb|EEK56359.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 429 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 27/266 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V ++ K + IS+ A + Sbjct: 51 LVEANSGKILYEKNADELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 171 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G +A + LI+V++ Sbjct: 231 FQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRK 271 A R + L GF N RK Sbjct: 291 ANSHAARFDETKKLYDYGFANFEVRK 316 >gi|154497956|ref|ZP_02036334.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC 29799] gi|150272946|gb|EDN00103.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC 29799] Length = 392 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 111/214 (51%), Gaps = 5/214 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ E D AS+TKLMTA V E + L +TI K + S Sbjct: 37 LVDAESGRVLMEKNADEERAIASITKLMTALVAV----ESTSDLDRTVTIQKEWTLAEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G +TL L L++ S ND A+AIA FV+ MN ++ LG+ THF Sbjct: 93 SMYLREGEELTLRELLYGLLLVSGNDAALAIAGFCAGDTDTFVEWMNLRAQELGMEHTHF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +N +G+ GHY+TA DMA L+ + + P K + + G+ N N + + G Sbjct: 153 VNPNGLPAEGHYSTAADMAKLA-IVVMEQPDLAEIVGTKSVTMAGRTMTNHNKLLWRYEG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GMKTG+T A+G +V+ A + Q LIAV L A Sbjct: 212 CVGMKTGYTDAAGRTLVSCAERDGQRLIAVTLNA 245 >gi|226312616|ref|YP_002772510.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] gi|226095564|dbj|BAH44006.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] Length = 406 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 129/273 (47%), Gaps = 20/273 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-------DTNTGHVIAENYPDHPWNPASLT 57 L+++ M + + P E++ L TL+ D TG V+ E P PAS+T Sbjct: 8 LLVVVMVLFNLGMPSAFAEESSSLEPNTLIGQSAILIDATTGQVLFEKNPHEKLYPASIT 67 Query: 58 KLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 K+ T Y + +K L +T+SK A + ++G +TL N L L++ S Sbjct: 68 KIATGIYAI------EKGNLDDTVTVSKKARREEGTRVYLEEGEKITLRNLLYGLLMNSG 121 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AIAE + +T ++F +N K +G++ T+F N HG+ HYTTA DMA +S Sbjct: 122 NDAGTAIAEHMSQTTERFAVDLNAYLKEKVGVTETNFANPHGLHDPNHYTTAADMAKIS- 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 R P + K L G+ + N N + + GA G+K GFT + +V S Sbjct: 181 RYAMKNPVFREIVGTKRLPWHGQTWETVLVNHNKLLREYEGATGIKNGFTDQAMHTLVGS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A +G+ LIAV + A K LL GF Sbjct: 241 AKRGETELIAVTMKASTSANAYKDIKKLLDFGF 273 >gi|229196199|ref|ZP_04322948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293] gi|228587264|gb|EEK45333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293] Length = 317 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G +I ++ + + PAS++K+MT Y++ + K P+ +S A++ + Sbjct: 70 IIDASNGDIIYQHNENEAFAPASMSKMMTVYLLLENVHNGKVRWEDPVKMSAKAAQTEGA 129 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + T+T+ + L+++SAN+ AVA+AE + K+EK FVQ M+ +K +S Sbjct: 130 RIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAKAKQFKMSEHAK 189 Query: 152 FMNAHGVVQ-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKY 200 F NA G+ + G T TA D+A L++ + D+P+ + ++ + I Sbjct: 190 FANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDM 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N G DG+KTGFT ++G+ +A QGD +I V++G + R + L+ Sbjct: 250 LNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLM 309 Query: 261 SMGF 264 S F Sbjct: 310 SYAF 313 >gi|261403951|ref|YP_003240192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] gi|261280414|gb|ACX62385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] Length = 472 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +NA + S Sbjct: 86 LIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKTVGS 145 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + +E +FV MN+T+K +GL F Sbjct: 146 RIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEAEFVTMMNDTAKKMGLKTAFF 205 Query: 153 MNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +N+ G+ + +A D A+L+ I D P + + I+ + + + Sbjct: 206 INSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFAKFTAIQSHKFRPRDT 265 Query: 201 P---NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T A+G+ +A + LI+V++G Sbjct: 266 SPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVVMGT 325 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R K + +L GF N Sbjct: 326 KSEGARFKETKKVLDYGFDN 345 >gi|152977572|ref|YP_001377089.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026324|gb|ABS24094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 425 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 L D +TG V+ E PD AS++KLM Y V +K K T + IS A E Sbjct: 38 LFDADTGKVLHEQNPDELLAVASMSKLMVVYAVLEAIKAGKITWNTKVNISDYAYEVSRN 97 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F+KG T+ +++ SAN ++A+AE L +EK F++ + +K LGL Sbjct: 98 NEFSNVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLKLADEYAKKLGLK 157 Query: 149 ATHFMNAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQ 189 F+NA G+ +H T +ARDM IL+ + T +P+ + + Sbjct: 158 KYKFVNATGLNNADLKGKHPEGTDPNGENSLSARDMGILAKTLITKYPEMLEDTKQRFRN 217 Query: 190 IKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ Sbjct: 218 FPDNHPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIK 277 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 + R S L+ GF N Sbjct: 278 TKSMDERFTESRELIDYGFRN 298 >gi|114706870|ref|ZP_01439770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi HTCC2506] gi|114537818|gb|EAU40942.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi HTCC2506] Length = 387 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 13/246 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + D TG V+ E D PASL KLMT VVF L++ T+S++A Sbjct: 33 PTAFMKDFATGRVLFEKNADMEVEPASLAKLMTIAVVFDELEKGTISRDQTFTVSEDAWR 92 Query: 89 YPPSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 +NS GSTM ++D+ LK +I++S ND + IAE + + F MN Sbjct: 93 TGGANS---GGSTMFLPLGGEVSVDDLLKGIIIQSGNDATIVIAEGIAGSVDAFADMMNK 149 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ +GL+ + F N+ G+ + T RD+ L+ + ++P+ F + G Sbjct: 150 RAQAIGLTHSRFGNSSGLPHPDSHVTMRDLVTLAEHLIREYPEEYPAFAEESYRYNGITQ 209 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + LGADG+KTG T A+G+ +VASA + ++ + N R + S ++ Sbjct: 210 NNRNPLLS--LGADGLKTGHTQAAGYGLVASAEADGRRVVFALSRMASSNERARESQRMM 267 Query: 261 SMGFYN 266 G + Sbjct: 268 EFGLQD 273 >gi|332653043|ref|ZP_08418788.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332518189|gb|EGJ47792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 367 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 5/214 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ D P AS TKLMTA V E L +TI A+ S Sbjct: 37 LMEAESGRVLYAKDADTPRLIASTTKLMTALVAL----ESGHSLEEDVTIPAEAAGVEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G T+ L+ L +++ S ND A A+A + + + F Q MN S+ LG++ +HF Sbjct: 93 SLYLKTGETVKLETLLYGMLLHSGNDAATAVALTCAGSLEAFAQKMNEKSQQLGMTNSHF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ HY++A DMA+L+ R P+ + ++G+ + N N + + G Sbjct: 153 TNPTGLDGEEHYSSAYDMALLA-RACLAVPELKEITATRSTTMEGRTFVNHNKLLWRYEG 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GMKTG+T A+G +V++A + +LIAV L A Sbjct: 212 CVGMKTGYTQAAGRTLVSAAERDGMTLIAVTLNA 245 >gi|238019958|ref|ZP_04600384.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748] gi|237863482|gb|EEP64772.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748] Length = 285 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 27/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 49 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + + F + MN + G + F Sbjct: 106 NLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRVAAKAGAKNSVF 165 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +N HG+ Q GH++TARD+A+++ +R K Y +Q + P T Sbjct: 166 LNPHGLTQMGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQ--------NRTPETI 217 Query: 205 WAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 F+ GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + Sbjct: 218 RTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVM---LNDDNRWDEAVQF 274 Query: 260 LSMGF 264 L GF Sbjct: 275 LDYGF 279 >gi|218289386|ref|ZP_03493620.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] gi|218240492|gb|EED07673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] Length = 456 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 15/240 (6%) Query: 14 SNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 S P++ +T+ P ++D +TG V+ +P PAS+TK+MT + Sbjct: 52 SGPIPYVVGEDTSSWPSIVSQAAVVMDMDTGAVVYAKHPTALHYPASITKIMT-----AL 106 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + LT +T S +A PP + G TL + L L++ SAND AV IAE Sbjct: 107 LALRLGRLTDVLTASPDAVRQPPDKLYMRVGEKATLKDLLYGLLIDSANDAAVEIAERYG 166 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 + F MN ++ LG + THF+N G+ H TTA DMA+++ R P++ Sbjct: 167 GSVAHFADMMNAEARALGATHTHFVNPSGLPDPRHVTTAYDMAVIA-RAAMQIPEFRTIV 225 Query: 189 QIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + E KG + N N + T+ GA G+KTGFT + +V +A +G + +AV++ Sbjct: 226 DTRSYEWKGTAWQATLTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLM 285 >gi|224534683|ref|ZP_03675255.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S] gi|224513931|gb|EEF84253.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S] Length = 401 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 29/273 (10%) Query: 20 LSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +++AE NKL + L+D +T V+ P+ + PASLTK++T Y ++ Sbjct: 28 VNLAEINKLSLHAKSIVLMDFDTKRVLYSKKPNLVFPPASLTKIVTIYTALIEAGKRNVK 87 Query: 76 LTTPITISKNASEY-PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 L + + IS +AS Y P NS+ +KG + + LK L + S ND ++AIAE + Sbjct: 88 LKSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEILKGLSISSGNDASIAIAEFVVGDL 147 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMH--- 186 FV MN NLGL HF+ G TA DMA S+ K F +H Sbjct: 148 NSFVNLMNINVMNLGLFNMHFVEPSGYSNENK-ITALDMAFFVKSYIEKFKFMLNIHSLK 206 Query: 187 YFQIK-----GLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 YF G + K K N N + + +DG+KTG+ SG N+VA+A +GD+ Sbjct: 207 YFVYPKSKNLGTTLASKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATAQKGDR 266 Query: 238 SLIAVILG---ALDRN---TRNKVSASLLSMGF 264 LIAV+LG ++R+ R ++ +L GF Sbjct: 267 RLIAVVLGVEKGINRSGERMRALIAKNLFEYGF 299 >gi|326204096|ref|ZP_08193957.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] gi|325985863|gb|EGD46698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] Length = 401 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ E + AS TK+MTA V K+ + ++ +SK A+ S Sbjct: 62 VMDAKSGRVLYEKNGYKRNSIASTTKIMTAIVAIENGKDDEDVI-----VSKRAASIGGS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+G L N L ++++S ND A+AIAE + + + F + MN + +G + T+F Sbjct: 117 RVNLKEGKIYKLGNLLNAMMLRSGNDAAIAIAEHIGGSVEAFAEMMNRKAAQIGATNTNF 176 Query: 153 MNAHGVVQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + HG+ HY+T D+A+++ + +K + ++ K +G NTN + + Sbjct: 177 VTPHGLDDPQHYSTPFDLAMITQYALKNE--KFCKIVSTKSSSFEGNPINNTNEMLSLYP 234 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG+T +G +V SA +I+V+L R+ R + S LL F N Sbjct: 235 GADGVKTGYTGQAGRCLVTSATHNGWKVISVVLNCSTRSVRAQNSKILLDYAFGN 289 >gi|56551985|ref|YP_162824.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543559|gb|AAV89713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ZM4] Length = 400 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 37/270 (13%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF +IA P + D ++G V+ D PAS+ K+MT YV F +K+ + L Sbjct: 34 PFETIA-----PIAYMKDLSSGAVLYAKDADRRMPPASMAKMMTVYVAFDLIKKGQLKLD 88 Query: 78 TPITISKNASEYPPSNSTFKK------GSTMTLD--------NALKLLIVKSANDIAVAI 123 PIT+ T+KK GSTM L N L ++ S ND V + Sbjct: 89 QPITVQPE---------TWKKWHGPSAGSTMFLSPNEQVSAANLLHGIVTLSGNDACVVL 139 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFP 182 +E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ L+ DFP Sbjct: 140 SEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLETLAEATIRDFP 199 Query: 183 QYMHYFQIKGLEIKGKKY--------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 F + GK N + +G GADG+KTG T +G+ SA Q Sbjct: 200 DLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDEAGYGFTGSAEQ 259 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + L+ V+ G R + S + ++ GF Sbjct: 260 RGRRLVMVMAGLPSNAARREQSIAFMNWGF 289 >gi|260752472|ref|YP_003225365.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551835|gb|ACV74781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 400 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 37/270 (13%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF +IA P + D ++G V+ D PAS+ K+MT YV F +K+ + L Sbjct: 34 PFETIA-----PIAYMKDLSSGAVLYAKDADRRMPPASMAKMMTVYVAFDLIKKGQLKLD 88 Query: 78 TPITISKNASEYPPSNSTFKK------GSTMTLD--------NALKLLIVKSANDIAVAI 123 PIT+ T+KK GSTM L N L ++ S ND V + Sbjct: 89 QPITVQPE---------TWKKWHGPSAGSTMFLSPNEQVSAANLLHGIVTLSGNDACVVL 139 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFP 182 +E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ L+ DFP Sbjct: 140 SEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLETLAEATIRDFP 199 Query: 183 QYMHYFQIKGLEIKGKKY--------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 F + GK N + +G GADG+KTG T +G+ SA Q Sbjct: 200 DLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDEAGYGFTGSAEQ 259 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + L+ V+ G R + S + ++ GF Sbjct: 260 RGRRLVMVMAGLPSNAARREQSIAFMNWGF 289 >gi|241761932|ref|ZP_04760017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373612|gb|EER63184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 400 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 37/270 (13%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF +IA P + D ++G V+ D PAS+ K+MT YV F +K+ + L Sbjct: 34 PFETIA-----PIAYMKDLSSGAVLYAKDADRRMPPASMAKMMTVYVAFDLIKKGQLKLD 88 Query: 78 TPITISKNASEYPPSNSTFKK------GSTMTLD--------NALKLLIVKSANDIAVAI 123 PIT+ T+KK GSTM L N L ++ S ND V + Sbjct: 89 QPITVQPE---------TWKKWHGPSAGSTMFLSPNEQVSAANLLHGIVTLSGNDACVVL 139 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFP 182 +E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ L+ DFP Sbjct: 140 SEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLETLAEATIRDFP 199 Query: 183 QYMHYFQIKGLEIKGKKY--------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 F + GK N + +G GADG+KTG T +G+ SA Q Sbjct: 200 DLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDEAGYGFTGSAEQ 259 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + L+ V+ G R + S + ++ GF Sbjct: 260 RGRRLVMVMAGLPSNAARREQSIAFMNWGF 289 >gi|260583723|ref|ZP_05851471.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] gi|260158349|gb|EEW93417.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] Length = 473 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 29/251 (11%) Query: 24 ETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 E N P T++ D +TG ++ + D PW+PAS++K+MTAY+ F +KE K L T +T Sbjct: 64 EENYRPESTIMVDADTGEIVFGSNIDQPWDPASISKMMTAYMAFEAMKEGKLSLDTVVTA 123 Query: 83 SKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ SN+ G ++ L ++ S+N + +A + ++ +F+ M Sbjct: 124 TEEDRAISTIGEISNNIIVAGVDYPIEELLYMMFYPSSNVATLMVARATGLSDTEFLNKM 183 Query: 139 NNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ 183 N K G+ T F NA G V G+Y TTARD+AIL++ DFP+ Sbjct: 184 NAKFKEWGMENTKFNNASGAVASAFRGYYTPEGYNNNRYNQTTARDLAILAYHFLKDFPE 243 Query: 184 YMHYFQIKGLEIK-GKKYPNTNWAVGT--------FLGADGMKTGFTCASGFNIVASAIQ 234 ++ + + + G Y + + + F G DG KTG + ++ FN + +A Q Sbjct: 244 ITNFTKNPLITVMVGTPYEESFYTYNSSIPGMYQGFPGVDGFKTGSSPSAAFNHLLTAKQ 303 Query: 235 GDQSLIAVILG 245 D I VILG Sbjct: 304 EDTRFIQVILG 314 >gi|147678303|ref|YP_001212518.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146274400|dbj|BAF60149.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 371 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 17/222 (7%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 L+D TG V A+N+ PASLTK+MTA V + L +T+ A+ Sbjct: 34 LMDVQTGQVYYAKNHYRRA-EPASLTKIMTAVVAL-----ENGNLGDVVTVGGRAAAVSM 87 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +KG +TL+ LK ++ SAND VAIAE + + ++F++ MN + LGL T Sbjct: 88 GSIIDLRKGEKITLEELLKAALISSANDSTVAIAEHVGGSHERFIKMMNAKAAVLGLFGT 147 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------NT 203 + N +G HYTTARD+A+L+ R P++ Q K ++ + P N+ Sbjct: 148 RYANTNGYHDPNHYTTARDLAVLT-RCALGHPKFNELVQTKEAAVRWVEPPEREEKIINS 206 Query: 204 NWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + G + G DG+KTG T +G + ASA + + LIAV+L Sbjct: 207 NRLLFGGYEGIDGVKTGTTPMAGNCLAASATREGRRLIAVVL 248 >gi|224531645|ref|ZP_03672277.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana VS116] gi|224511110|gb|EEF81516.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana VS116] Length = 401 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 122/249 (48%), Gaps = 23/249 (9%) Query: 20 LSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +++A+ N+L + L+D +T ++ P+ + PASLTK++T Y +++ Sbjct: 28 VNLADINELSRHAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIK 87 Query: 76 LTTPITISKNASEY-PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 L + IS AS Y P NS+ +KG + + LK L V S ND A+AIAE + Sbjct: 88 LKNIVPISDAASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDAAIAIAEFVVGDV 147 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------Q 183 FV MN + NLGL HF+ G TA DMA + F + Sbjct: 148 NSFVNLMNINALNLGLFNMHFVEPSGYSNENK-ITALDMAFFAKSYIEKFKFMLNIHSLE 206 Query: 184 YMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 Y Y + K L I K N N + + +DG+KTG+ SG NI+A+A++G++ Sbjct: 207 YFVYPKSKNLGITLSSKFLNLKQKNANLLISEYPYSDGLKTGYIRESGLNIIATALKGER 266 Query: 238 SLIAVILGA 246 LIAV+LG Sbjct: 267 RLIAVVLGV 275 >gi|195978798|ref|YP_002124042.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975503|gb|ACG63029.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 393 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 29/262 (11%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D T ++ ++ D P +PAS++K+ T Y++F L + K L T I Sbjct: 36 TVSEVNRPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTI 95 Query: 81 TISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T ++ Y SN+ G + + + + +V S+N V IA L + F+ Sbjct: 96 TATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G + G+Y TTARD A L + T+ Sbjct: 156 DRINKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTN 215 Query: 181 FPQYMHYF-QIKGLEIKGKKYP------NTNWAVGTF--LGADGMKTGFTCASGFNIVAS 231 +P + + Q + G Y N + G F G DGMKTG + ++ FN V + Sbjct: 216 YPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVT 275 Query: 232 AIQGDQSLIAVILGALDRNTRN 253 A +G+ LI V+LG D + +N Sbjct: 276 AKRGNTRLITVVLGVGDWSDQN 297 >gi|225871201|ref|YP_002747148.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] gi|225700605|emb|CAW95136.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] Length = 393 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 29/262 (11%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D T ++ ++ D P +PAS++K+ T Y++F L + K L T I Sbjct: 36 TVSEVNRPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTI 95 Query: 81 TISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T ++ Y SN+ G + + + + +V S+N V IA L + F+ Sbjct: 96 TATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G + G+Y TTARD A L + T+ Sbjct: 156 DRINKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTN 215 Query: 181 FPQYMHYF-QIKGLEIKGKKYP------NTNWAVGTF--LGADGMKTGFTCASGFNIVAS 231 +P + + Q + G Y N + G F G DGMKTG + ++ FN V + Sbjct: 216 YPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVT 275 Query: 232 AIQGDQSLIAVILGALDRNTRN 253 A +G+ LI V+LG D + +N Sbjct: 276 AKRGNTRLITVVLGVGDWSDQN 297 >gi|221218183|ref|ZP_03589649.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a] gi|221192131|gb|EEE18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a] Length = 405 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 136/278 (48%), Gaps = 30/278 (10%) Query: 15 NIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 N+F +++AE NKL Y L+D +T ++ P+ + PASLTK++T Y + Sbjct: 24 NLFA-VNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAE 82 Query: 71 EKKAMLTTPITISKNASEY---PPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ L + + IS +AS Y P S+ F +KG + + LK L V S ND ++AIAE Sbjct: 83 KRNIKLKSIVPISDSASYYNALPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEF 142 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQY 184 + FV MN NLGL HF+ G TA DMA S+ K F Sbjct: 143 VVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENK-ITALDMAFFVKSYIEKFKFMLN 201 Query: 185 MH---YF-----QIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +H YF + G + K K N N + + +DG+KTG+ SG N+VA+A Sbjct: 202 IHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATA 261 Query: 233 IQGDQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 +G++ LIAV+LG R+ ++ +L GF Sbjct: 262 KKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGF 299 >gi|160935972|ref|ZP_02083346.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC BAA-613] gi|158441214|gb|EDP18931.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC BAA-613] Length = 549 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 33/299 (11%) Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWN 52 M++FL++ I + + + +FP + A + ++D++TG V+ D P+ Sbjct: 6 MKRFLMLFICLCLCAGLFPITAAAAPEWPSDVSIQADAGIVMDSDTGTVLYGKNMDQPYY 65 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALK 109 PAS+TK++TA +V ++ L +T S + E S++ +G +T+ + L Sbjct: 66 PASITKILTALIVL-----EQCDLNEMVTFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLY 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAN+ A A+A + + + F Q MN +++LG + +HF N G+ HYTTA D Sbjct: 121 ALMLASANESANALACHVSGSREAFAQLMNEKARSLGCTGSHFNNPSGLNDENHYTTAHD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP------------NTNWAVGTFLGADGM 216 MA+++ R P+++ + ++ K+ P N N AV + GA Sbjct: 181 MALIA-RAAIQNPEFLTINGTRSYQLAPTKRTPEGGYVANHHKMLNKNEAV-YYPGAFAG 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 KTG+T +G +V A + D +LIAV+L + + +L GF N + ++Y Sbjct: 239 KTGYTSLAGNTLVTCARKNDMTLIAVVLNG--HQSHYSDTKALFDFGFRNFQSLRTVDY 295 >gi|229020609|ref|ZP_04177345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|228740670|gb|EEL90932.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 425 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 121/256 (47%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G+DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S +L+ GF N Sbjct: 285 ERFTESRALIEYGFNN 300 >gi|304405771|ref|ZP_07387429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304345014|gb|EFM10850.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 437 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 17/248 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E D PAS+TK+MT Y+V +K + T ++ S A+ PP Sbjct: 60 LMEPTTGQVLYELNADEALPPASMTKMMTEYIVLEEIKAGRLTWDTVVSTSAEAATVPPD 119 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +G T+ + V SA+D +A+A + + FV MN T++ LGL++ Sbjct: 120 GSQVYLAEGEKHTVKELYIAMAVGSASDATIALAVQIGGSTAGFVDKMNETAQKLGLTSA 179 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAV 207 HF G ++ +ARDMA L+ I + P+++ Y I + + + + N NW + Sbjct: 180 HFTGPSG-LEETTVISARDMAKLASTIILNDPEFLTYSSIPRYKFRERDQGELINYNWML 238 Query: 208 GT-----------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G+ + G DGMKTG+ A+G+ + ++V++ + R + + Sbjct: 239 GSNKNSEELKSFAYPGVDGMKTGYIGAAGYCFTGTVEVNGLRYVSVVMNTKTKQARFRET 298 Query: 257 ASLLSMGF 264 A L G+ Sbjct: 299 AKLYDFGY 306 >gi|294794892|ref|ZP_06760027.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44] gi|294454254|gb|EFG22628.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44] Length = 300 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 27/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 64 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + KF + M + G + F Sbjct: 121 NLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVF 180 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +N HG+ Q GH++TARD+A+++ +R K Y +Q + P T Sbjct: 181 LNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQ--------NRAPETI 232 Query: 205 WAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 F+ GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + Sbjct: 233 RTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVM---LNDDNRWDEAVQF 289 Query: 260 LSMGF 264 L GF Sbjct: 290 LDYGF 294 >gi|229199512|ref|ZP_04326173.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228583917|gb|EEK42074.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] Length = 425 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 285 ERFTESRELIEYGFNN 300 >gi|269797345|ref|YP_003311245.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella parvula DSM 2008] gi|269093974|gb|ACZ23965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella parvula DSM 2008] Length = 285 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 27/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 49 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + KF + M + G + F Sbjct: 106 NLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVF 165 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +N HG+ Q GH++TARD+A+++ +R K Y +Q + P T Sbjct: 166 LNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQ--------NRAPETI 217 Query: 205 WAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 F+ GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + + Sbjct: 218 RTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVM---LNDDNRWEEAVQF 274 Query: 260 LSMGF 264 L GF Sbjct: 275 LDYGF 279 >gi|168334024|ref|ZP_02692243.1| D-alanyl-D-alanine carboxypeptidase [Epulopiscium sp. 'N.t. morphotype B'] Length = 426 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 41/291 (14%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPAS 55 M + L+ I + + IFP + IA+ ++P L+D TG ++ E + + PAS Sbjct: 1 MNKQLIKIMLCVFLLIFPKICIAQ--EVPKINAEAAILMDAKTGTILYEKNAYNRYYPAS 58 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLI 112 +TKLMTAY+ L IT S +A S+S+ ++G + +D AL L+ Sbjct: 59 ITKLMTAYLAIQHLNPNDY-----ITFSNHAVTSIDSDSSRIGMREGEKLLVDQALHALL 113 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND+A A+ E++ T + F Q M T+ + G +AT+F N HG+ HYTT DMA+ Sbjct: 114 LDSANDVANALGEAVSGTTENFAQLMTKTAHDFGATATNFANPHGLHNSKHYTTPYDMAL 173 Query: 173 LSWRIKTDFPQYMH------YFQIKGLEIKGKK-YPNTNWAV------------GTFLGA 213 ++ I D +Y+ +QI + K Y + + A+ LG Sbjct: 174 ITKAIYND--EYLREIMDTPTYQIPSTNLSNKTIYLSQSHALMNPIRDSQRYREDVILG- 230 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 KTG+T +G +V +G+ LI VI+ +N N +A LL GF Sbjct: 231 ---KTGYTTPAGNTLVTVGKRGEVELIVVIMKGHLQNYYNDTNA-LLDYGF 277 >gi|229099816|ref|ZP_04230740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|228683562|gb|EEL37516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 423 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 28/263 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N+ +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G+DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYNKTDRKKI 273 R S +L+ GF N +++K+ Sbjct: 283 ERFTESRALIEYGF-NSFEKQKL 304 >gi|51892127|ref|YP_074818.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863] gi|51855816|dbj|BAD39974.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863] Length = 565 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 11/239 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG V++E P AS TK+MTA L ++ +T+S NA+ P Sbjct: 323 YILVDVATGAVLSEYNARAPRAIASTTKIMTA-----LLAVEQGHPDAVVTVSANAASQP 377 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + G TL L L++ S ND AVAIAE L +E+ F + MN + LG T Sbjct: 378 GTSVYLRAGEQRTLRELLYGLMLVSGNDAAVAIAEHLAGSEEAFARRMNLRAAELGAQNT 437 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNW 205 +F+ A G+ Y+TA D+A +S + F YM+ Q I GL ++ N+N Sbjct: 438 YFVTASGLDDDVNPYSTAEDLARISLASLRNPLFRSYMYLPQATIPGL-WGNRQLTNSNL 496 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + GA G+K G+T +G+ +VASA + + ++ V+LG R+ + SL+ GF Sbjct: 497 FVLRYPGATGVKNGWTEKAGYTLVASAWRDGREVMLVLLGGESRSALYAEAYSLMDHGF 555 >gi|282849251|ref|ZP_06258636.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC 17745] gi|282580955|gb|EFB86353.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC 17745] Length = 285 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 33/248 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 49 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + KF + M + G + F Sbjct: 106 NLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVF 165 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLE--------IK 196 +N HG+ Q GH++TARD+A+++ +R K Y +Q + E I+ Sbjct: 166 LNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIR 225 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 KYP GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + Sbjct: 226 -NKYP----------GANGLKTGFTNAAGECLIASATRKGHTMIVVM---LNDDNRWDEA 271 Query: 257 ASLLSMGF 264 L GF Sbjct: 272 VQFLDYGF 279 >gi|229118879|ref|ZP_04248226.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228664535|gb|EEL20030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] Length = 423 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 121/254 (47%), Gaps = 27/254 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N+ +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G+DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGF 264 R S +L+ GF Sbjct: 283 ERFTESRALIEYGF 296 >gi|168205928|ref|ZP_02631933.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] gi|170662569|gb|EDT15252.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] Length = 444 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEEDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSKHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|147678211|ref|YP_001212426.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146274308|dbj|BAF60057.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 407 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 14/220 (6%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D G V+ E PD PAS TK+MTA + + L + + A Sbjct: 37 VVIDIKNGQVLFEKNPDRRVYPASTTKIMTAVIAL-----ENGRLDAAVAVPGEACNIEG 91 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ ++G ++L++ L L++ S ND AVAIA + + + FV MN + LG TH Sbjct: 92 SSIGLQEGEKISLEDLLYALMLNSGNDTAVAIACHVGGSVEAFVSMMNKKAAELGAVNTH 151 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------NTN 204 F N +G+ GHY+TA DMA++S R P++ + I+ + P N N Sbjct: 152 FNNPNGLPDPGHYSTAYDMALIS-RYAMQNPEFRKIVSTRVKTIR-RSVPDAQVYLENHN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GA G+KTG+T +G +V+SA + + L+AV++ Sbjct: 210 RLLWLYEGATGVKTGYTVEAGQCLVSSAARQGRELLAVVM 249 >gi|256752163|ref|ZP_05493029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|256748977|gb|EEU62015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] Length = 421 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 46/357 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 LV+ + +N+ P I P L+D TG V+ + PAS TK++TA + Sbjct: 14 LVVQITPVYANVPPPPEIVG----PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAII 69 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K L +T S N ++ ++ G +TL+ L ++++SAND A+AIA Sbjct: 70 AI-----EKGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIA 124 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ R P++ Sbjct: 125 EHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIA-RYAMQNPEF 183 Query: 185 ------MHYF--------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +HY +++ L + + +++ + GADG+KTG+T A+G + A Sbjct: 184 RKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAA 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-----KTDR-KKINYI-------- 276 SA + + LI+VI+G N + LL GF N KT++ + I YI Sbjct: 241 SATRDGRRLISVIMGDQGTNIWTD-TIKLLDYGFQNFSLVKKTEKGETITYIDLGKSHFK 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + +++ EVP E TQ I N +K +K + + K TL N+I Sbjct: 300 LPLIAKEDFYYEVPKGQENSIETQ---IILNKDIKTPINK-GDVLGYIKYTLDGNEI 352 >gi|289578077|ref|YP_003476704.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|297544350|ref|YP_003676652.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527790|gb|ADD02142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|296842125|gb|ADH60641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 417 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 24/258 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ + PAS TK++TA + +K L +T S N ++ Sbjct: 34 PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIAI-----EKGNLNDIVTASDNVTK 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ G +TL+ L ++++SAND A+AIAE + + + F + MN +K +G Sbjct: 89 IDGNSIFLSPGEQLTLEQLLYAIMLESANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAY 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYF--------QIKGLE 194 +HF+N +G+ HY+T DMA+++ R P++ +HY +++ L Sbjct: 149 NSHFVNPNGLPDENHYSTPYDMALIA-RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLW 207 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + +++ + GADG+KTG+T A+G + ASA + + LI+VI+G N Sbjct: 208 LSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAASATREGRRLISVIMGDQGTNIWTD 264 Query: 255 VSASLLSMGFYNKTDRKK 272 + LL GF N + KK Sbjct: 265 -TIKLLDYGFQNFSLVKK 281 >gi|172056057|ref|YP_001812517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum 255-15] gi|171988578|gb|ACB59500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum 255-15] Length = 415 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 13/247 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---S 87 Y ++D TG ++ D PAS+TKLMT Y+V +++KK + S+ + Sbjct: 35 YIMVDAVTGKILLAEQADLALPPASMTKLMTLYLVRQQIEQKKLSWNQTVRPSEKVLKLA 94 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + P + +T T+ +KSAND AV +AE + TEK+FV+ MN T+ LG+ Sbjct: 95 KTPGIARLPIRKTTYTIRELYDAAFIKSANDAAVLLAEVMAGTEKQFVERMNETAVALGM 154 Query: 148 SATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 T + NA G+ + + TA D+++L R D+P + + + I G+K Sbjct: 155 EDTEYANASGLDAVDATLPGTNLMTAMDISLLIIRYIQDYPDVLDVTKRSFITINGEKVE 214 Query: 202 NTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N+N + + G GMKTG T +G+ + A +G+ +L++V++ R + Sbjct: 215 NSNKMLPRQPYAYSGMRGMKTGTTDLAGYCFASVATRGNLTLVSVVMRTTSDKARFAETK 274 Query: 258 SLLSMGF 264 LL GF Sbjct: 275 KLLDYGF 281 >gi|167037830|ref|YP_001665408.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914766|ref|ZP_07132082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724000|ref|YP_003903751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|320116247|ref|YP_004186406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856664|gb|ABY95072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889701|gb|EFK84847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581061|gb|ADN54460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|319929338|gb|ADV80023.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 421 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 161/333 (48%), Gaps = 42/333 (12%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ + PAS TK++TA + +K L +T S N ++ Sbjct: 34 PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIAI-----EKGNLNDIVTASNNVTK 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ G +TL+ L ++++SAND A+AIAE + + + F + MN +K +G Sbjct: 89 IDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAY 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYF--------QIKGLE 194 +HF+N +G+ HY+T DMA+++ R P++ +HY +++ L Sbjct: 149 DSHFVNPNGLPDDNHYSTPYDMALIA-RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLW 207 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + +++ + GADG+KTG+T A+G + ASA + + LI+VI+G N Sbjct: 208 LSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAASATRDGRRLISVIMGDQGTNIWTD 264 Query: 255 VSASLLSMGFYN-----KTDRKK-INYI--------IKDFYQQNLSNEVPNISEEVCTTQ 300 + LL GF N KT++ + I YI + +++ EVP E TQ Sbjct: 265 -TIKLLDYGFQNFSLVKKTEKGETITYIDLGKSHFKLPLIAKEDFYYEVPKGQENSIETQ 323 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 I N +K +K + + K TL N+I Sbjct: 324 ---IILNKDIKTPINK-GDVLGYIKYTLDGNEI 352 >gi|134298517|ref|YP_001112013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051217|gb|ABO49188.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 410 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +G V+ PAS TK++TA V + A +T +TI N S+ + Sbjct: 35 LLDAKSGAVLYGKEEHKRMYPASTTKVLTALVAL-----EHARMTDRVTIGPNPSKAGGT 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G + + L L++ SAND VAIAE + + KF N ++ LG + THF Sbjct: 90 SIWLQEGEQLAMQELLYALMLNSANDAGVAIAEHVAGSVGKFAAMSNERARELGANNTHF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMH--YFQIKGLEIKGKKYP-NTN--- 204 +N HG+ HY+TA D+A++ D + + + +I + + +KY N N Sbjct: 150 VNPHGMPNKDHYSTAYDLALIGQAALKNKDLRKILTTIHHEIPRADPEAQKYLFNHNKLL 209 Query: 205 WA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 W+ + GA G+KTG+T +G I+ASA + LIAV+L + N +A LL G Sbjct: 210 WSKTYGYKGATGLKTGYTVEAGQCIIASAERNGMELIAVVLRSEGFNLWTD-AAKLLDYG 268 Query: 264 FYNKTDRKKIN 274 F N T+R+ + Sbjct: 269 FANFTNRQLVQ 279 >gi|229065500|ref|ZP_04200748.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|228715818|gb|EEL67590.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 416 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 145 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 KG KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|134298966|ref|YP_001112462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051666|gb|ABO49637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 403 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 7/254 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 LLD ++G V+ + H P AS+TKLMT ++ +++ ++ + S++A Sbjct: 59 VLLDYSSGQVLYDK-DMHVARPMASVTKLMTMLLICEAESQERIKMSDKVVASEHACSMG 117 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G MT L + SAND +VA+AE + +++ FV MN +K +GL T Sbjct: 118 GSQIFLEPGEEMTAKEMLISIATGSANDASVAMAEFIAGSQEAFVSMMNEKAKKMGLKNT 177 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVG 208 HF N G+ HYT+A DMA + R +P + I +++G + NTN + Sbjct: 178 HFSNPTGLPIENHYTSAYDMAQV-LRECLRYPLFREVSSIYEYDLRGGDFKLWNTNKLLK 236 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YN 266 + GAD KTG+T + + + ASA + L++V+LG T + + + + GF Y Sbjct: 237 WYAGADAGKTGWTNEASYCLAASAKRDSLRLVSVVLGCPMPRTHFQETIKIFNYGFARYK 296 Query: 267 KTDRKKINYIIKDF 280 D + ++K+ Sbjct: 297 AVDMAEAGQVVKEI 310 >gi|294793071|ref|ZP_06758217.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27] gi|294456016|gb|EFG24380.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 27/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 64 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND A+ +AE++ + KF + M + G + F Sbjct: 121 NLGVRVGDQITLEGVLEGMMVASGNDAAIVVAENVSGSVDKFAKDMTRIAAKAGAKNSVF 180 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +N HG+ Q GH++TARD+A+++ +R K Y +Q + P T Sbjct: 181 LNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQ--------NRAPETI 232 Query: 205 WAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 F+ GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + Sbjct: 233 RTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVM---LNDDNRWDEAVQF 289 Query: 260 LSMGF 264 L GF Sbjct: 290 LDYGF 294 >gi|167946344|ref|ZP_02533418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 228 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 6/157 (3%) Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +I++S ND VA+AE + +E+ F + MNN ++ LG+ A+HF+N+ G+ HYTT D+ Sbjct: 1 MIIQSGNDACVALAEHIAGSEETFAEVMNNHARRLGMHASHFINSTGLPDKDHYTTPEDI 60 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFN 227 A ++ +FP Y ++ K K N N W T DGMKTG T A+G+ Sbjct: 61 AKVAMATIREFPDYYKWYSEKSFVFNKIKQHNRNKLLWRDNT---VDGMKTGHTEAAGYC 117 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +VASA + LI+V++G R S +LL+ GF Sbjct: 118 LVASAQREQMRLISVVMGTKSEKARASASQALLNYGF 154 >gi|18311103|ref|NP_563037.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|18145786|dbj|BAB81827.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|229170684|ref|ZP_04298327.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228612787|gb|EEK69969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] Length = 442 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 31/289 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V+ + + + P L + + + L++ N+G ++ + D AS+TK+M+ Y+ Sbjct: 27 MVVTSGSASAETVPALDVEAGSAI----LVEANSGKILYQKNADELLAIASMTKMMSEYL 82 Query: 65 VFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V + + K + IS+ A + SN + G + T+ + +++ SAN Sbjct: 83 VHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 142 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHY-----------TT 166 +A+AE + E FV+ MN+ SK G+ F+N+ G+ H GH+ + Sbjct: 143 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMS 202 Query: 167 ARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWA----VGTFLGADGMK 217 ARD AIL+ R+ DFP+ + +I K KG KYP N NW + + G DG+K Sbjct: 203 ARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLK 262 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 TG T +G + + LI+V++ A R + L GF N Sbjct: 263 TGTTPEAGDCFTGTVERNGMRLISVVIKASSHTARFDETKKLYDYGFAN 311 >gi|229084569|ref|ZP_04216839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228698719|gb|EEL51434.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 373 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 12/251 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKL 59 R ++VI + M ++I P + A+ N + LL+ ++G V+ P AS+TK+ Sbjct: 3 RTWIVIALIVMCASIIPIHTYAQMNDVSARNAILLEEHSGRVLYGKSEHEPQKIASITKI 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA L + + + IS A S K G+ + L++ + L+++S ND Sbjct: 63 MTA-----LLAAESGRMREAVPISDKAVRVEGSAIYLKPGNKVPLEDLVYGLLLRSGNDA 117 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIK 178 A AIAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R Sbjct: 118 AQAIAENVGGSIEGFVYMMNEKAKQIGMEDTHFSNPHGLDGDGTHYSSAYDMALLT-RYA 176 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + F K + K YP N + A G KTGFT +G +V +A + Sbjct: 177 MGNETFRKIFGTKTYQSKAWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKD 236 Query: 236 DQSLIAVILGA 246 LI V L A Sbjct: 237 GLDLIVVTLNA 247 >gi|251796370|ref|YP_003011101.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] gi|247543996|gb|ACT01015.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] Length = 393 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 29/252 (11%) Query: 29 PYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 PY+T L+D +G ++ D ASLTK+MTA V K + + T+ + Sbjct: 34 PYHTSANGSALVDVKSGRILYSENGDQSMRIASLTKIMTAIVAIEHGKLSERVKTSSRAV 93 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 K S + G MTL N L L+++S ND A AIAE + +E+ FV MN + Sbjct: 94 GKEGSSI-----YLQLGEEMTLLNMLYGLMLRSGNDAATAIAEHVGGSEEGFVHLMNEKA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 + LGL+ T F N HG+ GHY++A D+A L ++ ++ + +I ++K P Sbjct: 149 EMLGLTHTQFKNPHGLDVEGHYSSANDLAKLTAYALRNPV-----FAEIVSTKVKSVPNP 203 Query: 202 NTNWA---------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + W + + GADG+KTG+T + +V+SA + Q L AV L D Sbjct: 204 HEKWQYSWTNKNKMLAMYEGADGVKTGYTKKALRCLVSSATRDGQQLAAVTLNDRDDWVD 263 Query: 253 NKVSASLLSMGF 264 ++ +L GF Sbjct: 264 HR---QMLDWGF 272 >gi|86357779|ref|YP_469671.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86281881|gb|ABC90944.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 360 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 23/246 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T EYP S Sbjct: 1 MIEASTGTVLLAKNEDQSFSPASLAKLMTMDLVFDAVTKGQITLDT---------EYPVS 51 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + IAE + +E++F Q M Sbjct: 52 EYAWRTGGAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIIIAEGMAGSEQQFAQSM 111 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF + E Sbjct: 112 TRRARELGMEKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQQDFEWNKI 171 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGF G++IVAS + + L + G R + + Sbjct: 172 FQRNRNPLLGLDLGADGLATGFAEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKR 231 Query: 259 LLSMGF 264 +L G Sbjct: 232 VLEWGL 237 >gi|229011746|ref|ZP_04168928.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|228749543|gb|EEL99386.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 442 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 171 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 KG KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 291 ANSHTARFDETKKLYDYGFAN 311 >gi|168215748|ref|ZP_02641373.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] gi|182382096|gb|EDT79575.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|229133606|ref|ZP_04262433.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228650006|gb|EEL06014.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 338 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 16/247 (6%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEY 89 TL+DTN+G ++ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 39 TLIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAET 98 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P T K +T+ + L L + N A+A+AE + E F MN+ +K L LS Sbjct: 99 SPIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQ 156 Query: 150 -THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNT 203 + F+NA G+ TT+ D+A L+ ++ DFP ++ ++ + K K NT Sbjct: 157 PSPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNT 216 Query: 204 NWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N + + G DG++T F+ ++ V++A +GD LI+VIL A D N+ + Sbjct: 217 NKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVILDAGDENSTFIETK 276 Query: 258 SLLSMGF 264 LL GF Sbjct: 277 KLLQYGF 283 >gi|168212842|ref|ZP_02638467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] gi|170715638|gb|EDT27820.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|229133395|ref|ZP_04262223.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228650068|gb|EEL06075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] Length = 442 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 31/289 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V+ + + + P L + + + L++ N+G ++ + D AS+TK+M+ Y+ Sbjct: 27 IVVTSGSASAETVPALDVEAGSAI----LVEANSGKILYQKNADESLAIASMTKMMSEYL 82 Query: 65 VFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V + + K + IS+ A + SN + G + T+ + +++ SAN Sbjct: 83 VHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 142 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHY-----------TT 166 +A+AE + E FV+ MN+ SK G+ F+N+ G+ H GH+ + Sbjct: 143 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMS 202 Query: 167 ARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWA----VGTFLGADGMK 217 ARD AIL+ R+ DFP+ + +I K KG KYP N NW + + G DG+K Sbjct: 203 ARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLK 262 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 TG T +G + + LI+V++ A R + L GF N Sbjct: 263 TGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311 >gi|182624061|ref|ZP_02951849.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] gi|177910954|gb|EDT73308.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|229026963|ref|ZP_04183283.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228734350|gb|EEL85024.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] Length = 453 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 62 LVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQD 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 122 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 181 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I Sbjct: 182 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 241 Query: 195 IK-GKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 242 FQNGGKYPIDMTNFNWMLKGLIKEYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 301 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 302 ANSHTARFDETKKLYDYGFAN 322 >gi|228975468|ref|ZP_04136023.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784262|gb|EEM32286.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 441 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L ++EK F+ N +K LGL F+ Sbjct: 121 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 180 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 240 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 300 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 301 ERFTESRELIEYGFNN 316 >gi|167630369|ref|YP_001680868.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] gi|167593109|gb|ABZ84857.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] Length = 259 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 11/222 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E P PAS TK++TA + F F L + IS+ A + Sbjct: 28 LMDAETGRILFERQAHQPRPPASTTKIVTALLGFEF-----GDLEDEVIISQKAGSTGEA 82 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L + L +V+S ND VAIAE + +E+ F M S+ +G ++ F Sbjct: 83 SINLFPGERVALGDLLTGALVRSGNDACVAIAEHIAGSEEFFTLWMTAKSRIIGGRSSQF 142 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YP----NTNWAV 207 N +G+ H+++A D+A+++ R P++ + + +K ++ +P NTN + Sbjct: 143 FNTNGLPHKHHWSSAYDLAVVT-REAMRRPEFAATVRSRRATLKNRQGWPKEIKNTNALL 201 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 ++ ADG+KTG T A+G +VASA + ++ LIAV+L + DR Sbjct: 202 WSYPFADGVKTGTTRAAGACLVASATKNNRQLIAVVLHSDDR 243 >gi|110800833|ref|YP_696799.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|168208823|ref|ZP_02634448.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] gi|110675480|gb|ABG84467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|170713162|gb|EDT25344.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] Length = 444 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNVASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|320538339|ref|ZP_08038220.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis F0421] gi|320144838|gb|EFW36573.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis F0421] Length = 478 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 116/254 (45%), Gaps = 25/254 (9%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPS 92 + +TG ++ E D PASLTKL+ YV + + L + + A PP Sbjct: 99 NADTGQLLYEYQADRKIPPASLTKLVAMYVAMQAIDSGEITLDQVVVPPRESWAENIPPG 158 Query: 93 NSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S G +T+ L+ + V S ND A+A+A ++ + KFV+ M+ K LGL T Sbjct: 159 SSLLFLGPNQQLTVSELLRGMAVVSGNDAAIALAHAVSGSVPKFVERMSQAVKTLGLKHT 218 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ------------IKGLEIKGK 198 F G+ + +YTTARD A ++P+ + F +K L Sbjct: 219 VFTEPSGLSEE-NYTTARDFARFCLVYIREYPENLERFHALQELTYPLSHNVKNL--ISI 275 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRNTR 252 P TN +G G DG+KTGF SGFNI + + ++AVILG A R R Sbjct: 276 TQPATNTLLGKLKGCDGLKTGFIYESGFNIALTCKRAGTRILAVILGGAGKTIAQGRAIR 335 Query: 253 NKVSASLLSMGFYN 266 K +++ F+N Sbjct: 336 EKDGEKIMNWAFHN 349 >gi|228942535|ref|ZP_04105070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228982101|ref|ZP_04142393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228777639|gb|EEM25914.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228817128|gb|EEM63218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943187|gb|AEA19083.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 423 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L ++EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|225867884|ref|YP_002743832.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] gi|225701160|emb|CAW98052.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 29/262 (11%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E NK ++D T ++ ++ D P +PAS++K+ T Y++F L + K L T I Sbjct: 36 TVSEVNKPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKITLDTTI 95 Query: 81 TISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T ++ Y SN+ G + + + + +V S+N V IA L + F+ Sbjct: 96 TATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G + G+Y TTARD A L + + Sbjct: 156 DRINKTAKELGMTNTHFSNASGAIAQAFQGYYVPEKYDLTASNITTARDFATLIYYFLNN 215 Query: 181 FPQYMHYF-QIKGLEIKGKKYP------NTNWAVGTF--LGADGMKTGFTCASGFNIVAS 231 +P + + Q + G Y N + G F G DGMKTG + ++ FN V + Sbjct: 216 YPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVT 275 Query: 232 AIQGDQSLIAVILGALDRNTRN 253 A +G+ LI V+LG D + +N Sbjct: 276 AKRGNTRLITVVLGVGDWSDQN 297 >gi|23099281|ref|NP_692747.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777510|dbj|BAC13782.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 367 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 18/256 (7%) Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F+ ++ +L FP S++ N + L++ +TG V+ E + + AS Sbjct: 2 MRVFIGLLTSLILFMSFPSYGQALPSVSANNAV----LIEQSTGRVLFEKNANEEASIAS 57 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + ML +T S+ A S+ ++G + L + + L+++S Sbjct: 58 ITKIMTAIIAI-----ESGMLDEQVTTSRKAIYTEGSSIYLEQGEEIPLKDLVYGLMLRS 112 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AVAIAE + +E+ FV MN +K LG+ THF N HG+ HY++A DMAIL Sbjct: 113 GNDAAVAIAEHVGGSEEGFVYLMNEKAKWLGMENTHFDNPHGLDSDTHYSSAYDMAIL-M 171 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + D P + Q + Y N + G KTG+T A+G +V SA Sbjct: 172 KYAMDNPMFREVSQSDSYLSNNRTYHWQNKNKLLTRLYEYCTGGKTGYTKATGRTLVTSA 231 Query: 233 IQGDQSLIAVILGALD 248 + LIAV L A D Sbjct: 232 HKNGMDLIAVTLDAPD 247 >gi|220931566|ref|YP_002508474.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] gi|219992876|gb|ACL69479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] Length = 377 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 119/212 (56%), Gaps = 10/212 (4%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG V+ + +H PAS TK++T + ++ L +T+S+ A+ S+ + Sbjct: 45 TGQVLYNHRMNHKLPPASTTKILTTIIAI-----EEGELNEMVTVSRRAAYQEGSSIWLQ 99 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 +G + L++ L +++ S ND AVA+AE + + KKF + MN +K +G + ++F+N G Sbjct: 100 EGEKLPLEDLLYGVMLASGNDAAVAVAEHISGSVKKFSELMNKRAKEIGATNSNFLNPSG 159 Query: 158 VVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG 212 + Q GHY+TA D+A I+ + +K D + + K + GK++ N N + + Sbjct: 160 LPQSGHYSTAHDLAMIMRYALKNDIFARITSTKYKTISWPGKEWDRGLRNHNKLLWKYPD 219 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G KTG+T A+G +VASA + ++ ++AV+L Sbjct: 220 ITGGKTGYTRAAGRCLVASAKRDNRHVVAVVL 251 >gi|218682277|ref|ZP_03529878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 408 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 23/246 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D ++PASL KLMT +VF + + + L T EYP S Sbjct: 49 MIEAATGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDT---------EYPVS 99 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + TE++F + M Sbjct: 100 EYAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGTEQQFAESM 159 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 160 TRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQQSYPNLYPYFAQPDFEWNKI 219 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 220 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFLALAGIASDKERTEEAKR 279 Query: 259 LLSMGF 264 +L G Sbjct: 280 VLEWGL 285 >gi|229034027|ref|ZP_04188975.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228728290|gb|EEL79318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 423 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 121/256 (47%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|157151599|ref|YP_001450863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gordonii str. Challis substr. CH1] gi|157076393|gb|ABV11076.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus gordonii str. Challis substr. CH1] Length = 460 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 29/259 (11%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + + + N+ ++D NTG V+ ++ D +PAS++KLMT Y++F + + K T Sbjct: 34 YPDVKDINRPRSSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDT 93 Query: 79 PITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KK 133 I S+ A Y SN+ G T+ + + +V S+N V IA L + Sbjct: 94 IIKASQTDQNIAGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDA 153 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIK 178 F+ MN+ +K LG++ TH+ NA G G Y TTARD+AIL++ Sbjct: 154 FLDQMNSKAKELGMTNTHWYNASGAAASSFKGFYTPQRYDNNAANQTTARDLAILAYNFV 213 Query: 179 TDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIV 229 +P + Y + + KG Y T N++V G DG+KTG + FN + Sbjct: 214 KKYPGILKYTNKPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYI 273 Query: 230 ASAIQGDQSLIAVILGALD 248 A+ +G+Q +I+VI+G D Sbjct: 274 ATVKRGEQRIISVIMGVGD 292 >gi|229105975|ref|ZP_04236597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228677459|gb|EEL31714.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 423 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 28/263 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N+ +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS I T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + + N NW A + G+DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PRPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYNKTDRKKI 273 R S +L+ GF N +++K+ Sbjct: 283 ERFTESRALIEYGF-NSFEKQKL 304 >gi|229091549|ref|ZP_04222757.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|228691773|gb|EEL45522.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 338 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E KF Q MN +K+L LS + Sbjct: 100 PIQVTSKDKTTV--RDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A QGD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKQGDTRLISVILDAENENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|322385858|ref|ZP_08059501.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus ATCC 51100] gi|321270143|gb|EFX53060.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus ATCC 51100] Length = 447 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D NTG ++ ++ D +PAS++K+MT Y+VF +KE Sbjct: 29 MARKMYPNENVQAINRPKSSLMIDGNTGDILWQDNIDEVRDPASMSKIMTLYLVFEAIKE 88 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K L T I + A Y SN+ G T+ + + +V S+N V +A L Sbjct: 89 GKLSLDTVIKATPQDQAVAGIYEISNNKIVAGVNYTVSELITMTVVPSSNATTVMLANYL 148 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN ++ LG++ T + NA G G+Y TTARD+ Sbjct: 149 SDNDPDAFLDKMNAKAQELGMTNTKWFNASGAAAVSFKGYYTPQRYNNYASNQTTARDLG 208 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL + ++P ++Y + +K G Y T N+++ G DG+KTG + Sbjct: 209 ILVYNFVKNYPDILNYTNQAKVTVKAGTPYEETFETYNYSLPGARYALEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +G+Q +I VI+G D Sbjct: 269 NGAFNYIATVKRGNQRVIGVIMGVGD 294 >gi|169346809|ref|ZP_02865760.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] gi|169297091|gb|EDS79213.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] Length = 444 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 21 IFSLILSTNVFAESNVPEI-KGEGMVLMDGPTGEVLAEKNANEKLAPASTTKTMTA---- 75 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 76 -LLTVEKANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 134 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 135 ISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 194 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 195 TKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N ++K++Y + LS VP Sbjct: 255 DRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVVP 314 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 315 ---EDIYKTFKNSEIENLSTD 332 >gi|307719458|ref|YP_003874990.1| D-alanyl-D-alanine carboxypeptidase A [Spirochaeta thermophila DSM 6192] gi|306533183|gb|ADN02717.1| putative D-alanyl-D-alanine carboxypeptidase A [Spirochaeta thermophila DSM 6192] Length = 387 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--KAMLTTPITISKNASEYPPS 92 + T V+ E D P ASLTKL+TAY+V ++ + L P+ + +PP Sbjct: 31 EPTTRTVLFEKQADLPHPAASLTKLVTAYLVLQAMEHGLLREDLPLPVPSALARIPFPPD 90 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G+T+T L L +V SAND A A+A L F + MN ++LG S Sbjct: 91 ASLAGLTPGTTLTPAQLLSLTLVYSANDAACALALLLAPDIPTFARRMNTLVQSLGYSHL 150 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-MHYFQIKGLEIKGKKYPNTNWAVGT 209 F G+ H + TAR++A+ + FP Y + + I G+ Y N N +G Sbjct: 151 SFEEPSGLSPH-NTITAREIALFAADYLDRFPSAPARYHSPRAVTIGGRTYLNRNTLLGR 209 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMG 263 + G +G+KTG+ SGF+IVA A +G SLIAV+LG + R+ +A+LL G Sbjct: 210 YPGLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPSYWEGMQERDHQAAALLDYG 269 Query: 264 F 264 F Sbjct: 270 F 270 >gi|218288835|ref|ZP_03493086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] gi|218240924|gb|EED08101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] Length = 289 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 28/277 (10%) Query: 2 RQFLVIIAM--AMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPA 54 R +IA AM + + P+ AE + P + D V+ + D P PA Sbjct: 11 RALAAVIACGWAMFAVLAPWAQ-AEATRPPAVNAKAAVVYDATNRKVLYDKRGDEPMYPA 69 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TKLMTA ++ L+ P+ IS+ AS P + G+ +T + AL LI+K Sbjct: 70 STTKLMTAILLVQHLQPDD-----PVYISETASRQPRVRLGLRPGTELTAEQALLALIMK 124 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND+A IAE++ +++ F + MN ++ +G + T F+ +G+ H T+A+D+A+++ Sbjct: 125 SANDVAYGIAETIGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALIT 184 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFN 227 + T +P+ + Q I GK N N ++G F+G KTGFT + + Sbjct: 185 AKAIT-YPRIVRAMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGG---KTGFTSRAMY- 239 Query: 228 IVASAIQGDQS---LIAVILGALDRNTRNKVSASLLS 261 +A+A++ L++V+ GA ++ + + LL+ Sbjct: 240 CLATAVRRPSDGHVLVSVVFGAPRKSLMYRETVRLLT 276 >gi|218463771|ref|ZP_03503862.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5] Length = 385 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 23/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T EYP S Sbjct: 26 MIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDT---------EYPVS 76 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F + M Sbjct: 77 EYAWRTGGAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESM 136 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ +G+ F N+ G+ TAR+M L+ ++ +P YF + E Sbjct: 137 TRRAREIGMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKI 196 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 197 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKR 256 Query: 259 LLSMGFYNKTDRK 271 +L G +R+ Sbjct: 257 VLEWGLTAFENRQ 269 >gi|158320769|ref|YP_001513276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140968|gb|ABW19280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 442 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 142/291 (48%), Gaps = 38/291 (13%) Query: 5 LVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L II +LS F + A+ + PY L+D TG V+ PAS TK+M Sbjct: 9 LTIIFTLILSFSFESMVFAQGQQPDISAPYGVLIDYETGTVLYNKNAHEKAYPASTTKVM 68 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-KGSTMTLDNALKLLIVKSANDI 119 TA +V + A L +TI + Y +S + KG + T+ L+ L+++SAND Sbjct: 69 TAVMVL-----ENANLDDKVTIDYDL--YVDGSSMYLLKGESFTVRELLQALLIRSANDA 121 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A+A + + FV+ MN +K LG T+F N HG+ H TTA D+A++S T Sbjct: 122 AEALAIHIAGSVDSFVEKMNARAKELGAFNTNFTNPHGLPDTNHVTTAYDLAMISKHAMT 181 Query: 180 DFPQYMHYFQIKGLEI-------KGKKYPNTN---WAVGT-----FLGA---------DG 215 F + + + L + + + Y NTN W G+ + G+ DG Sbjct: 182 -FDLFRETVKTEMLILEPTEQTPETRYYRNTNKFLWGTGSANHMLYNGSYINIKYDIIDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +KTG+T A+G +++S+ Q D LI+V+LGA + N S L+ G+ N Sbjct: 241 LKTGYTGAAGNCLISSSFQNDHRLISVVLGA-EGNHVYSDSRRLIDYGYEN 290 >gi|303230440|ref|ZP_07317201.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica ACS-049-V-Sch6] gi|302514979|gb|EFL56960.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica ACS-049-V-Sch6] Length = 279 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 33/248 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 43 LIDADNKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISPYATSMEES 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + + F + MN + G + F Sbjct: 100 NLGVQVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRIAAKAGAKNSVF 159 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLE--------IK 196 +N HG+ Q GH++TARD+A+++ +R K Y +Q + E I+ Sbjct: 160 LNPHGLTQMGHHSTARDLALIAAYGMKYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIR 219 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 KYP GA+G+KTGFT A+G ++ASA + ++I V+L D N N+ + Sbjct: 220 -NKYP----------GANGLKTGFTNAAGECLIASATRNGHTMIVVMLN--DDNRWNE-A 265 Query: 257 ASLLSMGF 264 L GF Sbjct: 266 VQFLDYGF 273 >gi|163760149|ref|ZP_02167232.1| penicillin binding protein [Hoeflea phototrophica DFL-43] gi|162282548|gb|EDQ32836.1| penicillin binding protein [Hoeflea phototrophica DFL-43] Length = 394 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 8/244 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 +LD +TG V+ + PASL KLMT VVF+ ++ + L +S+NA Sbjct: 47 MLDADTGTVLFSKNENDLVPPASLAKLMTMEVVFNAIRSGRLTLDDTFQVSENAWRTGGA 106 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +++ F + S++ L++ ++ +IV+SAND + IAE + +E F + M+ ++++GL Sbjct: 107 ISRTSTMFAELNSSIRLEDLIQGVIVQSANDGCIIIAEGMAGSEDNFSRLMSERARDIGL 166 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F N+ G+ + +D+ L+ I +P++ Y+ + N N + Sbjct: 167 TQSVFANSSGLPHPHSKVSMKDLVTLARHIHATYPEFYRYYSQPEFTWNNIRQRNRNPLL 226 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG---F 264 +G DG+KTGFT SG+ IVAS + + L + G R + + +L G F Sbjct: 227 NLDIGVDGLKTGFTEESGYGIVASIRRDGRRLFVAMSGLSSERERAEEARKMLEWGVRAF 286 Query: 265 YNKT 268 KT Sbjct: 287 ERKT 290 >gi|52140174|ref|YP_086656.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) [Bacillus cereus E33L] gi|51973643|gb|AAU15193.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) [Bacillus cereus E33L] Length = 418 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 124/265 (46%), Gaps = 28/265 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYNKTDRK-KIN 274 R S L+ GF N +K KIN Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKIN 307 >gi|150390086|ref|YP_001320135.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149949948|gb|ABR48476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 441 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 32/262 (12%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P LLD TG V+ + PAS TK +TA +V L+ L IT+ ++ Sbjct: 35 PNGVLLDFQTGEVLYDKNAHEITYPASTTKALTAILVLENLE-----LDEVITVEEDMF- 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S KG T++ L +L+++SAND+A +A + + + F MN +K LG Sbjct: 89 VGGSGMYLLKGEAFTVNELLHVLMIRSANDVAELLATHISGSVEAFADLMNRRAKELGAL 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAI-----LSWRIKTDFPQYMHYFQIKGLEI--KGKKYP 201 +HF N HG+ H TTA D+A+ +++ + + + Y ++ E + + Y Sbjct: 149 NSHFTNPHGLPDEEHVTTAYDLAMIGKHAITFDVLREIAGTVRY-DVEPTEFTPETRYYR 207 Query: 202 NTN---WAVGT-----FLG---------ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 NTN W G+ + G +G+KTGFT A+ ++ASAIQGDQ I+V+L Sbjct: 208 NTNRFLWGTGSGNQILYRGQYQNIKYDIVEGLKTGFTNAAQNCLIASAIQGDQRFISVVL 267 Query: 245 GALDRNTRNKVSASLLSMGFYN 266 GA N S +L+ GF N Sbjct: 268 GAQGVNVYAD-SRALIDYGFEN 288 >gi|262283155|ref|ZP_06060922.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA] gi|262261407|gb|EEY80106.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 29/259 (11%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + + + N+ ++D NTG V+ ++ D +PAS++KLMT Y++F + + K T Sbjct: 24 YPDVKDINRPRSSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDT 83 Query: 79 PITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KK 133 I S+ A Y SN+ G T+ + + +V S+N V IA L + Sbjct: 84 IIKASQTDQNIAGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDA 143 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIK 178 F+ MN+ +K LG++ TH+ NA G G Y TTARD+AIL++ Sbjct: 144 FLDQMNSKAKELGMTNTHWYNASGAAASSFKGLYTPQRYDNNAANQTTARDLAILAYNFV 203 Query: 179 TDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIV 229 +P + Y + + KG Y T N++V G DG+KTG + FN + Sbjct: 204 KKYPGILKYTNKPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYI 263 Query: 230 ASAIQGDQSLIAVILGALD 248 A+ +G+Q +I+VI+G D Sbjct: 264 ATVKRGEQRIISVIMGVGD 282 >gi|294676801|ref|YP_003577416.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB 1003] gi|294475621|gb|ADE85009.1| D-alanyl-D-alanine carboxypeptidase-2 [Rhodobacter capsulatus SB 1003] Length = 386 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 114/253 (45%), Gaps = 21/253 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D T V+ E D PAS++KLMT ++F L E + L T +S A + S Sbjct: 34 DLTTQTVLLEKDADVAVPPASMSKLMTLNMLFEALSEGRVTLDTTFAVSTKAKQMGGSTM 93 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + ++ ++ +++ S ND V +AE L +E F M +K LG++ + F N Sbjct: 94 FLNEMDRPSVRELMQGVVINSGNDACVVVAEGLAGSEGAFAAGMTERAKMLGMTRSTFAN 153 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------------KYPN 202 A G + D+ IL+ R+ T FPQY F K + K P Sbjct: 154 ASGWPHPDQRMSMHDLGILAVRLITQFPQYYPLFSETQFNYKNRAPANAHNRNPLLKIPA 213 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---ALDRNTRNKVSASL 259 +W ADG+KTG T +G+ +V SA+ GD+ ++ VI G DR + + A+ Sbjct: 214 ADWH------ADGLKTGHTEEAGYGLVGSAVMGDRRIVFVISGLASEADRASEAEAVANW 267 Query: 260 LSMGFYNKTDRKK 272 F KT +K Sbjct: 268 AFRQFVMKTVAQK 280 >gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] Length = 677 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 21/241 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D TG +IA D + AS TKLMTA VV E ++L +TIS A P Sbjct: 410 WGIADAKTGAIIASYEEDDKLDIASTTKLMTALVVARMAGENASLLDEVVTISAAADATP 469 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKK------FVQHMNN 140 S++ ++G + L L L++ S ND +VA+AE L ++K F+ MN Sbjct: 470 GSSAWIREGEKLQLRELLYGLLLPSGNDASVAVAEHIGSKLMLDDRKPAPLDRFIAEMNK 529 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--IKGLEIKGK 198 + LG+S T + N HG+ + GH+++ RD L+ R P YF+ I+G I+ + Sbjct: 530 VAAELGMSDTSYKNPHGLTEEGHFSSVRDQLKLA-RTIVGTPMLAPYFEARIRGARIESE 588 Query: 199 -------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + N+N + + G G+KTG T A+G +V+ QG+ L+ V+LG+ + Sbjct: 589 MGYQRNVAWKNSNRLL-DYEGYRGLKTGTTDAAGACLVSHFQQGEVDLVCVVLGSTSSDG 647 Query: 252 R 252 R Sbjct: 648 R 648 >gi|324329337|gb|ADY24597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 423 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|220927940|ref|YP_002504849.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219998268|gb|ACL74869.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 401 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 8/235 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ E + AS TK+MTA V + + ++ +SK A+ S Sbjct: 62 VMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDGEDVI-----VSKKAASIWGS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G L N L L+++S ND A+AIAE + + + F + MN + +G + T+F Sbjct: 117 RVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAEMMNRKAAEIGATNTNF 176 Query: 153 MNAHGVVQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + HG+ HY+T D+A+++ + +K ++ K +G NTN + + Sbjct: 177 VTPHGLDAPQHYSTPYDLALITQYALKN--KKFCKIVSTKSSTFEGNPINNTNEMLSLYP 234 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG+T +G +V SA +I+V+L R+ R + S LL F N Sbjct: 235 GADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRAQSSKILLDYAFGN 289 >gi|303228596|ref|ZP_07315422.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica ACS-134-V-Col7a] gi|302516688|gb|EFL58604.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica ACS-134-V-Col7a] Length = 279 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 33/248 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 43 LIDADNKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISPYATSMEES 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + + F + MN + G + F Sbjct: 100 NLGVQVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRIAAKAGAKNSVF 159 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLE--------IK 196 +N HG+ Q GH++TARD+A+++ +R K Y +Q + E I+ Sbjct: 160 LNPHGLTQMGHHSTARDLALIAAYGMKYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIR 219 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 KYP GA+G+KTGFT A+G ++ASA + ++I V+L D N N+ + Sbjct: 220 -NKYP----------GANGLKTGFTNAAGECLIASATRNGHTMIVVMLN--DDNRWNE-A 265 Query: 257 ASLLSMGF 264 L GF Sbjct: 266 VQFLDYGF 273 >gi|229094501|ref|ZP_04225570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|229124894|ref|ZP_04254070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228658524|gb|EEL14188.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228688885|gb|EEL42715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 441 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 301 ERFTESRELIEYGFNN 316 >gi|228988616|ref|ZP_04148702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771067|gb|EEM19547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 423 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|196041013|ref|ZP_03108310.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus NVH0597-99] gi|196028181|gb|EDX66791.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus NVH0597-99] Length = 423 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|229164337|ref|ZP_04292267.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228619080|gb|EEK75976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 424 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLSLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM ILS I T +P+ + + Sbjct: 163 NSTGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|188584694|ref|YP_001916239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349381|gb|ACB83651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 416 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 32/280 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ + +PAS TK+MTA ++ + A L + +S+NA S Sbjct: 51 LMEFESGKVLYDQEMHRQMHPASTTKIMTALLLI-----ENASLREQVVVSENAFGTDGS 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +T + L L+V+SAND AVAIAE + + + F MN+ +K LG T+F Sbjct: 106 SMYLNLDEKITTRDLLYGLMVRSANDAAVAIAEYVAGSVENFADMMNSRAKELGAKNTNF 165 Query: 153 MNAHGVVQHGHYTTARDMAILS---------------WRIKTDFPQYMHYFQIKGLEIKG 197 N HG+ + H TTA D+ +++ RI D+P+ E + Sbjct: 166 KNPHGLTEENHKTTAYDLGVIAREALKNPKFRSVASTRRITLDWPEE---------EDED 216 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + + GA G+KTG+T ++ VA+A + +LIAV+L RN + + Sbjct: 217 RLLVNRNELLADYPGALGVKTGYTRSANQTFVAAAERDGMTLIAVVLST-SRNRLFEDAK 275 Query: 258 SLLSMGF--YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 LL GF + + + + N +I +N + E+ I EE Sbjct: 276 ELLDFGFEAFEQVEIFEQNDVITSTEVENSNQELELIVEE 315 >gi|42784563|ref|NP_981810.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC 10987] gi|42740495|gb|AAS44418.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC 10987] Length = 423 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|47570508|ref|ZP_00241136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47552816|gb|EAL11239.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 423 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|227486588|ref|ZP_03916904.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus lactolyticus ATCC 51172] gi|227235406|gb|EEI85421.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus lactolyticus ATCC 51172] Length = 402 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 16/274 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M F+ ++ +++ + + + E K Y + + G V E D P ASL+KLM Sbjct: 12 MAAFIFLMPISLAAGQNKIVGLDENVKA--YIIANEENGEVYYEKNADEPRAMASLSKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T V + L T + K A + + S+ K+G T T+D LK LI S N Sbjct: 70 TFLVTMDAIHSGALKLDTKVKADKEAEKLTSWEYSSLGVKEGETYTVDELLKGLIAVSGN 129 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY---TTARDMAILS 174 D A +A ++ +E F + MN +K L L + + N+ GV Y ++ARD+ LS Sbjct: 130 DCAYLLANTVSVSEPAFAREMNEKAKELDLKSQVYYNSSGVQTEDGYQNTSSARDLFKLS 189 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 I +P+ + Y I+ ++ G+ +T + G DG+KTG T +G+ +V + Sbjct: 190 QYILKTYPEILDYAAIREIKDPGRDIDKKSTIPLMDEIKGVDGLKTGTTDEAGYCLVTTV 249 Query: 233 IQG------DQSLIAVILGALDRNTRNKVSASLL 260 D I V++GA ++TRNKV + L+ Sbjct: 250 DMSKLDSNDDFRSIGVVMGADQKDTRNKVMSDLI 283 >gi|125973746|ref|YP_001037656.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|256005750|ref|ZP_05430704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281417903|ref|ZP_06248923.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|125713971|gb|ABN52463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|255990284|gb|EEU00412.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281409305|gb|EFB39563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|316940059|gb|ADU74093.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 1313] Length = 432 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 128/260 (49%), Gaps = 30/260 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEY 89 Y L+D+ TG V+AE+ PD PAS TK+MTA + L +T+S++A + Sbjct: 33 YILIDSKTGQVLAEHNPDLRTYPASTTKIMTAILALEL-----GDLNQIMTVSQSAIDDI 87 Query: 90 PPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P G + L L L+V+SAN+ A IAE+LC + ++F + MN ++ LG Sbjct: 88 GPGGMHIGLLPGEQLELRYLLDALLVRSANETAYVIAENLCSSREEFYRLMNEKARELGA 147 Query: 148 SATHFMNAHGVVQ----HGHYTTARDMAILSWRIKTDFPQYMHYFQ-------------- 189 + T+F+N G+ H TTARD+A ++ T P++ Q Sbjct: 148 TNTNFVNPCGIDNGEKGKNHLTTARDLAKIAQYAMT-IPEFREIVQKTIIKIPPTNKHAE 206 Query: 190 --IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGA 246 I G K Y N+ + + G+KTG+T + N+V+SA+ + + LIAV+LG Sbjct: 207 EVIVGTTNKLLLYSNSKYKSEHYTKITGIKTGYTDRALNNLVSSAVNDEGTELIAVVLGV 266 Query: 247 LDRNTRNKVSASLLSMGFYN 266 + + + S LL GF N Sbjct: 267 ENYDMVFEYSKMLLEYGFKN 286 >gi|323701270|ref|ZP_08112945.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323533872|gb|EGB23736.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 414 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 15/251 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D TG V+ PAS TK +TA V + A LT +TI NA + Sbjct: 38 VLIDAGTGQVLYGKDEHKRMYPASTTKTLTALVAL-----EHAKLTDLVTIGPNALQAGG 92 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++ +G + L + L L++ SAND VAIAE + + +KF N +K +G TH Sbjct: 93 TSIGLTEGEKIPLKDLLYALMLNSANDAGVAIAEHISGSVEKFAALSNQEAKKIGAKDTH 152 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMH--YFQIKGLEIKGKKYP-NTN-- 204 F N HG+ HY+TA D+A+++ + +F + + ++Q+ + +KY N N Sbjct: 153 FTNPHGMPDKNHYSTAYDLALIARQAMQNQEFRRIVSTVHYQVSRADPNAQKYLFNHNKL 212 Query: 205 -WA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 W+ + + G G+KTG+T +G ++ASA + + LIAV+L + N + + LL Sbjct: 213 LWSKIYGYQGTTGVKTGYTVEAGQCVIASAQRDGRELIAVVLHSDGSNIWSDAT-KLLDY 271 Query: 263 GFYNKTDRKKI 273 GF N R+ + Sbjct: 272 GFTNFHSRQVV 282 >gi|262283277|ref|ZP_06061043.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA] gi|262260768|gb|EEY79468.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA] Length = 412 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 36/289 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ +V++ + + + P +S +A N + + D NTG ++ E P S Sbjct: 1 MKKIIVLLFICLFCSFCPLVSADDFDVAAKNAIAF----DLNTGKILYEKEATSPVPIGS 56 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLL 111 LTKL++AY+V+ +K +K + + + IS+ A + Y SN KGS +++ L+ Sbjct: 57 LTKLLSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGS-YSVEELLEAS 115 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 ++ +AN +A+AE + +EKKFV M K G+S +N+ G+ Sbjct: 116 LIANANSATIALAEKISGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNS 175 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYPNTNWAVGTFLG 212 + +A DMA++S+ + D+PQ ++ F GLE+ Y + G Sbjct: 176 KKDEENQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMP-SYRKG 234 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+K G + G + +ASA + D LI V+L N + A L+ Sbjct: 235 VDGLKIGISDQGGLSFIASANERDMRLITVVLNV--ENAEEDIKALFLA 281 >gi|301056857|ref|YP_003795068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|300379026|gb|ADK07930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 423 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|213853083|ref|ZP_03382615.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 222 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 6/180 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 101 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 102 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T F HG+ G ++TARDMA+L + D P + K + PN N Sbjct: 162 LGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRN 221 >gi|218906570|ref|YP_002454404.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH820] gi|300117906|ref|ZP_07055673.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] gi|218534840|gb|ACK87238.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH820] gi|298724770|gb|EFI65445.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] Length = 423 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|30265411|ref|NP_847788.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis str. Ames] gi|47530965|ref|YP_022314.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|49188225|ref|YP_031478.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|165871278|ref|ZP_02215927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0488] gi|167635722|ref|ZP_02394032.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0442] gi|170688221|ref|ZP_02879432.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0465] gi|170708041|ref|ZP_02898489.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0389] gi|190568901|ref|ZP_03021803.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis Tsiankovskii-I] gi|227818157|ref|YP_002818166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. CDC 684] gi|229601349|ref|YP_002869603.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0248] gi|254687169|ref|ZP_05151027.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. CNEVA-9066] gi|254724048|ref|ZP_05185833.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055] gi|254742225|ref|ZP_05199912.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger B] gi|254755864|ref|ZP_05207896.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Vollum] gi|254761576|ref|ZP_05213596.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Australia 94] gi|30260089|gb|AAP29274.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames] gi|47506113|gb|AAT34789.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|49182152|gb|AAT57528.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis str. Sterne] gi|164712945|gb|EDR18473.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0488] gi|167528831|gb|EDR91588.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0442] gi|170127014|gb|EDS95893.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0389] gi|170667914|gb|EDT18666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0465] gi|190559968|gb|EDV13951.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis Tsiankovskii-I] gi|227006453|gb|ACP16196.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. CDC 684] gi|229265757|gb|ACQ47394.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0248] Length = 423 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|110802740|ref|YP_699397.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens SM101] gi|110683241|gb|ABG86611.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101] Length = 427 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 153/321 (47%), Gaps = 27/321 (8%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA Sbjct: 4 IFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTA---- 58 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L +KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 59 -LLTVEKANLNDIVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAEH 117 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF 181 + +E +F + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 118 ISGSEGEFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDEI 177 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGM--KTGFTCASGFNIVASAIQG 235 + Y K + + N N + D KTG+T S +A +G Sbjct: 178 TKKTVYEMPKSIVSGEPIWANNNNKLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRG 237 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFY---QQNLSNEVP 290 D+ LI +LG ++ + + +LL GF N + K N +IK++Y + NLS P Sbjct: 238 DRKLILTLLGYDTKDQYYEDTKNLLDYGFNNFSLVKLYSKNDVIKEYYIDDKNNLSLLAP 297 Query: 291 NISEEVCTTQK--EIINYNTQ 309 E++ T K EI N +T Sbjct: 298 ---EDIYKTFKNSEIENLSTD 315 >gi|229187618|ref|ZP_04314756.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228595870|gb|EEK53552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] Length = 441 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 301 ERFTESRELIEYGFNN 316 >gi|196045526|ref|ZP_03112757.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 03BB108] gi|225867373|ref|YP_002752751.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 03BB102] gi|196023733|gb|EDX62409.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 03BB108] gi|225787013|gb|ACO27230.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 03BB102] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|118480420|ref|YP_897571.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str. Al Hakam] gi|118419645|gb|ABK88064.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] Length = 441 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 301 ERFTESRELIEYGFNN 316 >gi|331092072|ref|ZP_08340903.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402273|gb|EGG81844.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium 2_1_46FAA] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 57/312 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 ++D TG ++ D PAS+TK++TA V + + +T + S+ + P Sbjct: 70 VMDMKTGAILYAKGIDEERYPASITKILTALVAI-----ENSQMTDMVKFSEESIQSLEP 124 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ K G +T+ +AL L++ SAN++A AI E++ T + F++ MN+ +K LG + Sbjct: 125 GYAHIAMKAGEEITMKDALHALMLASANEVAYAIGETVGGTHENFIKMMNDKAKELGCTH 184 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHY-------------FQIK 191 THF+N +G+ HYT+ARDMA++ S + D Q + Y FQ K Sbjct: 185 THFINTNGMFDEQHYTSARDMALIARAAFSHQELLDIVQTLQYTIPPTNMESEPRIFQQK 244 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + KY + N +G KTG+T + +V QGD ++AVI+ R+ Sbjct: 245 HKMLLNGKYHD-NRCIGG-------KTGYTEKAYNTLVTVMEQGDMEIVAVIM----RSR 292 Query: 252 RNKVSASLLSMGFYNKTDRKKI-NYIIKDFYQQNL-----SNEVPNISEEVCTTQKEIIN 305 R+ D KKI +Y +F + N+ S++V +I E C T + I Sbjct: 293 RDTFE------------DTKKICDYAFNNFREVNISANEKSDKVSDIDGEACVTLPKNIE 340 Query: 306 YNTQMKE-AKDK 316 +N ++ KDK Sbjct: 341 FNQLSRQYEKDK 352 >gi|167640402|ref|ZP_02398666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0193] gi|177651865|ref|ZP_02934448.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0174] gi|254735510|ref|ZP_05193217.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Western North America USA6153] gi|167511622|gb|EDR87004.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0193] gi|172082569|gb|EDT67633.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A0174] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|257126624|ref|YP_003164738.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis C-1013-b] gi|257050563|gb|ACV39747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis C-1013-b] Length = 422 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 30/331 (9%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLL---DTNTGHVIAENYPDHPWNPASLTKLMTA 62 VI +MA L+ LS A+ Y L D N G++I E+ AS+TK+MT+ Sbjct: 12 VIFSMAFLA--LSSLSFADGADYRDYKALLIGDVN-GNIIKEDNSLAVRPLASVTKIMTS 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K +T+S A+ P G T+ + LK I+KS+N+ A A Sbjct: 69 ILTLDKIKSGMISYDDKVTVSSKAASVPYG-IKLTAGKQYTVRDLLKATIIKSSNNAAYA 127 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILS 174 +AE + FVQ MN +++ GL + + + HG+ + G+ A+D+ L+ Sbjct: 128 LAEYVGGNVPNFVQSMNEKARSYGLESLRYCSPHGLPPSYTGSCMDQGN---AKDLYKLA 184 Query: 175 WRIKTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 D+ +Y+++ + K ++ K +TN +G LG DG+KTG+ A+G NIV +A Sbjct: 185 QITVKDYSEYLNFSKNKTDYVDNGNTKVTSTNSLLGNVLGVDGIKTGYHNAAGSNIVLTA 244 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 +G + +IA+ILG+ RN + ++ + N RK NY +N V + Sbjct: 245 DRGGERMIAIILGSNRAKDRNAIGTKEINDYYANGYARKNKNY---------NTNNVASA 295 Query: 293 SEEVCTTQK-EIINYNTQMKEAKDKESHFID 322 + V + E N NT + + K+ +FI+ Sbjct: 296 THAVDSYDNIETYNANTSKETKEPKKDNFIN 326 >gi|206975818|ref|ZP_03236729.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus H3081.97] gi|217962879|ref|YP_002341457.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH187] gi|206745912|gb|EDZ57308.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus H3081.97] gi|217067221|gb|ACJ81471.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH187] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + +S A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|49481295|ref|YP_039380.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228930397|ref|ZP_04093398.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949115|ref|ZP_04111385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|49332851|gb|AAT63497.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228810556|gb|EEM56907.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829244|gb|EEM74880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|65317369|ref|ZP_00390328.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 441 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 181 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 301 ERFTESRELIEYGFNN 316 >gi|229142132|ref|ZP_04270657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|228641421|gb|EEK97727.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 425 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + +S A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 224 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 285 ERFTESRELIEYGFNN 300 >gi|153823300|ref|ZP_01975967.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|126519164|gb|EAZ76387.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] Length = 225 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 3/156 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 42 YVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKN 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ Sbjct: 102 FPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGM 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +HF N+HG+ Y+T D+A+L + D P+ Sbjct: 162 KNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPE 197 >gi|255658320|ref|ZP_05403729.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260849639|gb|EEX69646.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 288 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 128/248 (51%), Gaps = 23/248 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E D PAS+TK+MT + + K L +T+S NA++ + Sbjct: 39 VIDEATGQVLYEKNADKREYPASMTKMMT--CILALEKSSPDQL---VTVSANAADVECT 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+ + + L+ +++ S N A A+ E++ E F MN ++ +G + THF Sbjct: 94 R--LYPGYTLRMADILQQMMMISDNGAATAVGEAVGGDEASFAAMMNAKAQEIGATHTHF 151 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKY--P-------- 201 +N +G+ HY+TARDM I ++ + D + +I G + K Y P Sbjct: 152 VNMNGMPDADHYSTARDMGKIAAYAMHNDA-----FRRIVGTKAKNIYYIVPQGHTTYCI 206 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + T+ G G+KTG+T A+ + A+A + + LIAV++ + D TR +A+LL Sbjct: 207 NTNELLDTYEGCTGIKTGWTSAARGCLSAAAKRDGKELIAVVMHSDDDETRFSEAAALLD 266 Query: 262 MGFYNKTD 269 GF + + Sbjct: 267 YGFEQEAE 274 >gi|49475609|ref|YP_033650.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49238416|emb|CAF27643.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 387 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 5/236 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 L+D +T V+ E D P+ PASL KLMTA V+F LKE T +S+NA Sbjct: 35 LVDDDTDTVLFEKQSDIPFFPASLAKLMTAEVIFHQLKEGLLSNTQTFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L+ LI+ + ND A+ +AE + +E F + MN +K LGL Sbjct: 95 PSGTTTMFAKVKTEISVSDLLRGLIIVNGNDAAITLAEGVSGSEADFAKLMNQRAKALGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++F+N G+ + + T RDM L+ I +P Y ++ N N + Sbjct: 155 EHSYFVNPTGLPEEEQFVTLRDMMTLTRHIARAYPNYYILYREPHFTWNKIFQRNKNPLI 214 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G +G G++ GF++V +A + + L I G + K +L G Sbjct: 215 SKEIGVEGFGFGYSEEEGFSMVVAAYKNHRHLFLAINGLQNGKGHTKEIERILQWG 270 >gi|313893802|ref|ZP_07827368.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral taxon 158 str. F0412] gi|313441366|gb|EFR59792.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral taxon 158 str. F0412] Length = 268 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 31/247 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +T ++ PD +PAS TK++T + + L+ K L TIS A+ S Sbjct: 32 LIDADTKEILFAKNPDKWMHPASTTKMVT---LLTALELKGTQLDELATISSYATSMEES 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G +TL+ L+ ++V S ND AV +AE++ + +KF + M + G + F Sbjct: 89 NLGVRVGDQITLEAVLEGMMVASGNDAAVVVAENVSGSVEKFGKDMTRIAAKAGAKNSVF 148 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKG-LEIKG------ 197 +N HG+ Q GH++TARD+A+++ +R K Y +Q + + I+ Sbjct: 149 LNPHGLTQMGHHSTARDLAMIAAYGMKYQMFRDKVANDYYKVPYQNRAPVTIRTTNHFIR 208 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 KYP GA+G+KTGFT A+G ++ASA + ++I V+ L+ + R + + Sbjct: 209 NKYP----------GANGLKTGFTNAAGECLIASATRNGHTMIVVM---LNDDNRWEEAV 255 Query: 258 SLLSMGF 264 L GF Sbjct: 256 QFLDYGF 262 >gi|229170279|ref|ZP_04297958.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228613202|gb|EEK70348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 338 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+DTN+G ++ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN+ +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TT+ D+A L+ ++ DFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A D N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|114570005|ref|YP_756685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] gi|114340467|gb|ABI65747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] Length = 381 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KN 85 + +LD TG V+ D PAS++K+MT ++ ++ L + +S + Sbjct: 31 HAVILDAETGEVLFSRNADEAMPPASMSKMMTVLMLIEAIEAGSLSLDDELPVSEYAWRT 90 Query: 86 ASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S++ F + S +D+ L+ +I++S ND + +AE++ +E F M + + Sbjct: 91 GGAASGSSTMFLEVNSRARVDDLLRGIIIQSGNDACIVVAEAIGGSEAAFADMMTDRAHE 150 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL++ F N+ G H +A D+A L+ + D P Y + + G + N N Sbjct: 151 LGLTSASFANSTGWPHPDHRISALDLARLARILIEDHPDYYDIWSEREFTYNGIRQYNRN 210 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G F GADG+KTG T SG+ +V SA + + I V G N R Sbjct: 211 PLLGVFSGADGLKTGHTEESGYGLVGSAERDGERRIIVFNGMSSNNDR 258 >gi|228911227|ref|ZP_04075032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228848403|gb|EEM93252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 423 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM IL+ I T +P+ + + Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|222098861|ref|YP_002532919.1| d-alanyl-d-alanine carboxypeptidase, putative [Bacillus cereus Q1] gi|221242920|gb|ACM15630.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus Q1] Length = 423 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + +S A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTNPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|228918002|ref|ZP_04081534.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841667|gb|EEM86779.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 423 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPKGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|223983850|ref|ZP_03634014.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM 12042] gi|223964174|gb|EEF68522.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM 12042] Length = 412 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 18/280 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLT 57 + F + A+A+ N+ P LSI +L L+D ++G V+ E D PAS+T Sbjct: 3 KWFKGLAALALAINMMPALSIKAEEELNLDGESAVLIDADSGAVLYEKNADDRHYPASIT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT Y+ S MLT T N + S+ G ++L +A I+ SAN Sbjct: 63 KIMTVYLALS-QGNPDQMLTATDTAIDNI-DRKSSHIWLDYGEELSLKDACYAAIMASAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D + +AE++ ++++F MN + G THF NAHG+ HYTTA DMA+++ R+ Sbjct: 121 DASNVLAEAIGGSQEEFAGLMNEAAAAAGAKNTHFANAHGLPDEDHYTTAYDMAMIT-RM 179 Query: 178 KTDFPQYMHYFQIKGLEI------KGKKY---PNTNWAVGTFL--GADGMKTGFTCASGF 226 + F E+ K +Y N G F A G K G+T +G+ Sbjct: 180 AMKNAAFAEVFGTVKYEMQPTNKQKDVRYFASGNDMLKKGEFFYEYATGGKIGWTEDAGY 239 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 IV +A + +LIAV+L ++N R + +L GF N Sbjct: 240 TIVTTASKDGVNLIAVVLKNSNKNARYTDTRALFDYGFAN 279 >gi|229011816|ref|ZP_04168997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|228749447|gb|EEL99291.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 338 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+DTN+G ++ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN+ +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TT+ D+A L+ ++ DFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A D N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|116252224|ref|YP_768062.1| penicillin-binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256872|emb|CAK07966.1| putative penicillin-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 397 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 23/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D ++PASL KLMT +VF L + + L T EYP S Sbjct: 38 MIEATTGTVLLAKNEDQGFSPASLAKLMTMDLVFEALTKGQITLDT---------EYPVS 88 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F M Sbjct: 89 EYAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSM 148 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 149 TRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKI 208 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G +GADG+ TGFT G++IVAS + + L + G R + + Sbjct: 209 FQRNRNPLLGLDIGADGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEAKR 268 Query: 259 LLSMGFYNKTDRK 271 +L G +R+ Sbjct: 269 VLEWGLTAFENRQ 281 >gi|167040728|ref|YP_001663713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|166854968|gb|ABY93377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] Length = 421 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 169/357 (47%), Gaps = 46/357 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 LV+ + +N+ P I P L+D TG V+ + PAS TK++TA + Sbjct: 14 LVVQITPVYANVPPPPEIVG----PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAII 69 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K L +T S N ++ ++ G +TL+ L ++++SAND A+AIA Sbjct: 70 AI-----EKGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIA 124 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ R P++ Sbjct: 125 EHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIA-RYAMQNPEF 183 Query: 185 ------MHYF--------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +HY +++ L + + +++ + GADG+KTG T A+G + A Sbjct: 184 RKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGDTVAAGQVLAA 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-----KTDRKK-INYI-------- 276 SA + + LI+VI+G N + LL GF N KT++ + I YI Sbjct: 241 SATRDGRRLISVIMGDQGTNIWTD-TIKLLDYGFQNFSLVKKTEKGETITYIDLGKSHFK 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + +++ EVP E TQ I N +K +K + + K TL N+I Sbjct: 300 LPLIAKEDFYYEVPKGQENSIETQ---IILNKDIKTPINK-GDVLGYIKYTLDGNEI 352 >gi|218231994|ref|YP_002370166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus B4264] gi|218159951|gb|ACK59943.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus B4264] Length = 423 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|210623818|ref|ZP_03294067.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275] gi|210153313|gb|EEA84319.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275] Length = 453 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 27/235 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ + + PAS TK TAY+V + + L ITI N PS Sbjct: 41 LMDYETGKVLYQKNGNVKIYPASTTKAWTAYLVIKHVPD----LNEKITIG-NLPYIEPS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + KKG T T+ L L+V S ND+A +AE + + KF MN ++ +G + THF Sbjct: 96 SMFLKKGETFTVKELLTALMVHSCNDVAYVLAEHVSGSIPKFADLMNKEAEAIGCTGTHF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPN--------- 202 N +G+ HYTTA+DMA+++ + +D + K ++ K K+YP+ Sbjct: 156 NNPNGLPDPNHYTTAKDMALIARKCMSD-SVFREIVATKSVKFKPTKQYPHERVYTNSNK 214 Query: 203 --TNWAVGTFLG---------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 T+ T+ G DG+KTGFT A+G ++ SA++ +Q +I+ + + Sbjct: 215 FLTSHQKITYKGKRIDIKYDIVDGIKTGFTNAAGKCLLTSAVKDNQRIISAVFNS 269 >gi|167040213|ref|YP_001663198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|300914297|ref|ZP_07131613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724467|ref|YP_003904218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|166854453|gb|ABY92862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|300889232|gb|EFK84378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581528|gb|ADN54927.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] Length = 382 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E P AS TK+MT V +K L +T+SK A+ S Sbjct: 38 VMDQETGRVLYEKNPHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + F++ MN ++ +G THF Sbjct: 93 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVENFIEIMNQKAREIGAYNTHF 152 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +GK++ N N Sbjct: 153 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 212 KLLWIYEGADGVKTGFTNKAGRCLVSSATRDGRRFIAVVL 251 >gi|229153550|ref|ZP_04281728.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228630154|gb|EEK86805.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] Length = 434 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 294 ERFTESRELIEYGFNN 309 >gi|229112801|ref|ZP_04242333.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|228670635|gb|EEL25947.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] Length = 434 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 294 ERFTESRELIEYGFNN 309 >gi|229051059|ref|ZP_04194606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|228722270|gb|EEL73668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] Length = 434 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 294 ERFTESRELIEYGFNN 309 >gi|257456802|ref|ZP_05621986.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC 35580] gi|257445808|gb|EEV20867.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC 35580] Length = 480 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 114/233 (48%), Gaps = 16/233 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90 ++D +G ++ E PD PASLTKL+ Y V ++ + L+ I K A P Sbjct: 90 VMDAASGALLFEKNPDQSIPPASLTKLVAMYTVMQAVERGEINLSDRIIPPKESWAVNIP 149 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S K +T++ + + V S ND AVA+A + FVQ MN LGL Sbjct: 150 PGSSLMFLGKNQQVTVEELMLGVAVVSGNDAAVALAIHTAGSVAAFVQRMNEAVAALGLQ 209 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-IKGLE-------IKGK-- 198 THF + +G+ ++ + TTARD A S +P+++ F + L +K + Sbjct: 210 NTHFEDVNGLSEY-NRTTARDFARFSAVYVRKYPEHLARFHSARELTYPQPHNMLKSQTS 268 Query: 199 -KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + P TN + G DG+KTGF SGFNI +A + IAVILG +N Sbjct: 269 FRQPATNTLLDKLDGCDGIKTGFIYESGFNIALTAQRDGNRFIAVILGGAGKN 321 >gi|228924135|ref|ZP_04087411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835625|gb|EEM80990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 423 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDLNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|228961651|ref|ZP_04123259.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798001|gb|EEM45006.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 423 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|327193414|gb|EGE60313.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 360 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 23/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T EYP S Sbjct: 1 MIEASTGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDT---------EYPVS 51 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F + M Sbjct: 52 EYAWRTGGAPSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESM 111 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ +G+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 112 TRRAREIGMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRI 171 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 172 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKR 231 Query: 259 LLSMGFYNKTDRK 271 +L G +R+ Sbjct: 232 VLEWGLTAFENRQ 244 >gi|326387759|ref|ZP_08209365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium nitrogenifigens DSM 19370] gi|326207805|gb|EGD58616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium nitrogenifigens DSM 19370] Length = 398 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 23/250 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P ++D N+G V+ P + PASLTK+MT+YV F +K K L + Sbjct: 44 PIAMMVDVNSGRVLFARDPHRRFVPASLTKIMTSYVAFELIKAGKLRLDQKFVMRPE--- 100 Query: 89 YPPSNSTFKK----GSTMTLDN--------ALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 TF K GSTM L N L+ ++ SAND V +AE + + F Sbjct: 101 ------TFHKWHGVGSTMFLGNNSSTSVADLLEGIVTVSANDACVVLAEGIAGSVPGFTA 154 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQ-YMHYFQIKGLE 194 MN +K +G+ +H+ +G + G Y +A D+ LS + T P Y ++ Sbjct: 155 MMNAEAKKIGMRDSHYNTPNGWMDQGETYVSAADLVALSTALITRHPDLYKRFYGHDHAT 214 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G N N G GADG+KTGFT +G+ V S +G + +I V+ G N R Sbjct: 215 FNGIAQENHNPLYGHTPGADGVKTGFTGEAGYGFVGSVERGGRRVIMVVAGYGRPNDRAD 274 Query: 255 VSASLLSMGF 264 S + + F Sbjct: 275 QSRTFVEWAF 284 >gi|269836468|ref|YP_003318696.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter thermophilus DSM 20745] gi|269785731|gb|ACZ37874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter thermophilus DSM 20745] Length = 386 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 123/271 (45%), Gaps = 27/271 (9%) Query: 16 IFPFLSIAETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + P +A +P T +D TG +A PD P+ PAS TK++TA +V Sbjct: 32 VVPDAPLAAPVPVPAITARAVLAVDLVTGATLAAVNPDMPYPPASTTKMLTALIV----- 86 Query: 71 EKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--- 125 + A L ITI E ++ + G + + + L L+V S D A A+A Sbjct: 87 RQHAALDEVITIEPGDLVDEVIYAHVGLRAGDRVAVRDLLAGLLVPSGGDAARALARVVG 146 Query: 126 -----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 + FV MN ++ LG+ +THF+N G G +TARD+AIL + D Sbjct: 147 ARLDPAATNPRAAFVAEMNRVARRLGMRSTHFVNPDGRDAPGQRSTARDLAILGAALLKD 206 Query: 181 ------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 Q + +KG + +TN +G LG G+KTG T G N+VA A + Sbjct: 207 PFLADVVAQPVTTISVKGPNARDITLWSTNHLLGE-LGVHGIKTGTTAEDGENLVAVAWR 265 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 GD +I V LG+ + N V A ++G + Sbjct: 266 GDHQVITVTLGSAEGERFNDVRALFDALGTH 296 >gi|229193641|ref|ZP_04320584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228589794|gb|EEK47670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] Length = 423 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKTMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|206970485|ref|ZP_03231438.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1134] gi|229072856|ref|ZP_04206055.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|229082601|ref|ZP_04215064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|206735062|gb|EDZ52231.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1134] gi|228701033|gb|EEL53556.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228710347|gb|EEL62322.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] Length = 423 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|30023419|ref|NP_835050.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|229130636|ref|ZP_04259592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|229147928|ref|ZP_04276269.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|296505812|ref|YP_003667512.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|29898980|gb|AAP12251.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|228635578|gb|EEK92067.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228652975|gb|EEL08857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|296326864|gb|ADH09792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 423 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|229176064|ref|ZP_04303558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228607408|gb|EEK64736.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 423 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYYSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|229181636|ref|ZP_04308961.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228601832|gb|EEK59328.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] Length = 423 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|146296850|ref|YP_001180621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410426|gb|ABP67430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 125/255 (49%), Gaps = 24/255 (9%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG ++ E D AS TK+MTA + + L I I A P S+ + Sbjct: 47 TGKILFEKNKDLKLPMASTTKIMTAILAI-----ENCDLNKEIEIPAQAIGVPGSSIYLE 101 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG + + L L++ S ND A A+A S+C KKFV MN +K LGL T F + HG Sbjct: 102 KGERLKIIELLYGLMLASGNDAAAALAISVCGDVKKFVNLMNKKAKELGLENTMFSSPHG 161 Query: 158 VVQHGHYTTARDMAIL-SWRIKTD-FPQYMHYFQIKGLEIKGKKYP------NTNWAVGT 209 + + HYTTA D+A L ++ +K F + + Q EI+ P N N + + Sbjct: 162 LEEGEHYTTAHDLARLTAYAMKNQTFREIVSTTQ---KEIRWTTRPYSRVLKNKNKMLKS 218 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--- 266 + GA+G+KTGFT +G +V SA + D +I V+L A D K +L + N Sbjct: 219 YQGAEGVKTGFTKRAGRCLVTSACRDDFRVICVVLNAPDMWNDTK---KILDFAYQNYKI 275 Query: 267 -KTDRKKINYI-IKD 279 K R +I Y+ +KD Sbjct: 276 LKIARGEIGYLRVKD 290 >gi|295696423|ref|YP_003589661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus tusciae DSM 2912] gi|295412025|gb|ADG06517.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus tusciae DSM 2912] Length = 366 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 21/250 (8%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +A+ M+ +FP + A N Y ++D +G V+ E D ASLTK++ Sbjct: 10 VAVTMI--LFPGVGAAAANSPDLYGISAQGAAVVDVGSGRVLYEKNGDQMMPIASLTKIV 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + L + L +TIS NA+ S+ + G T TL + + ++++S ND A Sbjct: 68 TGW-----LAVESGRLDERVTISANAARKEGSSVYLRAGETYTLRDLVYAMMLRSGNDAA 122 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE L +E +F MN ++ +GL HF N HG+ GH +A D+A ++ + + Sbjct: 123 TAVAEHLAGSEARFAALMNAKAREMGLRHVHFANPHGLDAPGHGASAVDLARMTAKALQN 182 Query: 181 FPQYMHYFQIK--GLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P++ + K + G+ + N N + + GADG+KTG+T +G + +SA + Sbjct: 183 -PEFAAVVRTKYHRMPWPGEAWDRVMRNKNKMLWRYPGADGVKTGYTKRAGRCLASSATR 241 Query: 235 GDQSLIAVIL 244 ++ V+L Sbjct: 242 DGHQVVVVVL 251 >gi|258512050|ref|YP_003185484.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478776|gb|ACV59095.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 290 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 28/277 (10%) Query: 2 RQFLVIIAM--AMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPA 54 R +IA A + + P+ AET + P + D V+ + D P PA Sbjct: 12 RALAAVIACGWATFAVLAPWAQ-AETTRPPAVNAKAAVVYDATDRKVLYDKRGDEPMYPA 70 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TKLMTA ++ L+ P+ IS+ AS P + G+ +T + AL LI+K Sbjct: 71 STTKLMTAILLVQHLQPDD-----PVYISETASRQPRVRLGLRPGTELTAEQALLALIMK 125 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND+A IAE++ +++ F + MN ++ +G + T F+ +G+ H T+A+D+A+++ Sbjct: 126 SANDVAYGIAETIGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALIT 185 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFN 227 + T +P+ + Q I GK N N ++G F+G KTGFT + + Sbjct: 186 AKAIT-YPRIVRAMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGG---KTGFTSRAMY- 240 Query: 228 IVASAIQ---GDQSLIAVILGALDRNTRNKVSASLLS 261 +A+A++ L++V+ GA ++ + + LL+ Sbjct: 241 CLATAVRRPYDGHILVSVVFGAPRKSLMYRETVRLLT 277 >gi|229161434|ref|ZP_04289415.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228621971|gb|EEK78816.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 416 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V ++ K + IS+ A + Sbjct: 25 LVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVENGKLKWDQKVKISEYAYKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEADFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 145 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 ANSHAARFDETKKLYDYGFAN 285 >gi|228968521|ref|ZP_04129509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228791227|gb|EEM38841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 423 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM IL+ I T +P+ + + Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEHGFNN 298 >gi|218900516|ref|YP_002448927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] gi|218541526|gb|ACK93920.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] Length = 423 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM IL+ I T +P+ + + Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEHGFNN 298 >gi|330814086|ref|YP_004358325.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp. IMCC9063] gi|327487181|gb|AEA81586.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp. IMCC9063] Length = 379 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D N+G V+ + + +PAS+TK+MT+ + F +K + L +S A ++ Sbjct: 31 LMDVNSGQVLFKKNENEKISPASITKVMTSIIAFDLIKSGELKLNEKFLVSNKAWRMAKQ 90 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ +T+ N LK +I+ S ND +A+AE + +E F MN+ +K++G++ Sbjct: 91 GYSSMFIVPNDRITVLNLLKGIIIASGNDACIALAEGIAGSEAAFASMMNDKAKSIGMTN 150 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVG 208 T+F N+ G+ +Y+T D++++S + +FP+ Y Y + + P T Sbjct: 151 TNFSNSSGIYSEDNYSTVSDISLMSVYLIKEFPELYKMYAERTFTWDRTGGNPITQSNRN 210 Query: 209 TFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 T L DG+KTG SG+++ A+ + ++ +++V+ G + R K S LL Sbjct: 211 TLLYKNSKVDGIKTGHLNDSGYSLAATMLVNNRRILSVVSGTNSQKERAKESLKLL 266 >gi|190891838|ref|YP_001978380.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190697117|gb|ACE91202.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 360 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 23/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T EYP S Sbjct: 1 MIEASTGTVLLAKNEDEGFSPASLAKLMTMDLVFEAVTKGQITLDT---------EYPVS 51 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F + M Sbjct: 52 EYAWRTGGAPSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESM 111 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ +G+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 112 TRRAREIGMEKAVFGNSTGLPGGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRI 171 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 172 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKR 231 Query: 259 LLSMGFYNKTDRK 271 +L G +R+ Sbjct: 232 VLEWGLTAFENRQ 244 >gi|57239549|ref|YP_180685.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium str. Welgevonden] gi|58579535|ref|YP_197747.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium str. Welgevonden] gi|57161628|emb|CAH58557.1| putative exported D-alanyl-D-alanine carboxypeptidase [Ehrlichia ruminantium str. Welgevonden] gi|58418161|emb|CAI27365.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium str. Welgevonden] Length = 290 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 12/265 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D ++ ++ E+ D + +S+ LMT YV FS++K + SK A + Sbjct: 38 IFDLSSNIMLFEHNIDRKIHLSSMNNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGP 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G + + + L +I SAND ++ +AE + +++ FV+ MN ++ L L++++F Sbjct: 98 SIFLRAGQPVPVRDLLDGIITLSANDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G++ T+ARD+ L+ R+ DFP+Y H F K L+ +TN + + + Sbjct: 158 TNVTGLLDSNQTTSARDLITLAQRLFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIA 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DGM T + +I+ D I +++ L+ N LL Sbjct: 218 IDGMAVKNTDQDDNHGAIISIKKDGRRILLLINGLENNEELLSEVQLL------------ 265 Query: 273 INYIIKDFYQQNLSNEVPNISEEVC 297 INY+ DF + + +V I E + Sbjct: 266 INYVYNDFSTKTIFQKVNKIEEIIV 290 >gi|163940330|ref|YP_001645214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163862527|gb|ABY43586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 338 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+DTN+G ++ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN+ +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TT+ D A L+ ++ DFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGINNDTNKQSTTTSIDAAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A D N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|229051351|ref|ZP_04194858.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228722004|gb|EEL73442.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] Length = 442 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 129/279 (46%), Gaps = 35/279 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFPQ ++ +I K Sbjct: 171 DYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 A R + L GF N+ +K+FY ++ Sbjct: 291 AKSHTARFDETKKLYDYGF--------ANFEVKNFYGKD 321 >gi|58617588|ref|YP_196787.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium str. Gardel] gi|58417200|emb|CAI28313.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium str. Gardel] Length = 290 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 12/262 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D ++ ++ E+ D + +S+ LMT YV FS++K + SK A + Sbjct: 38 IFDLSSNIMLFEHNIDRKIHLSSMNNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGP 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G + + + L +I SAND ++ +AE + +++ FV+ MN ++ L L++++F Sbjct: 98 SIFLRAGQPVPVRDLLDGIITLSANDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNF 157 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G++ T+ARD+ L+ R+ DFP+Y H F K L+ +TN + + + Sbjct: 158 TNVTGLLDSNQTTSARDLITLAQRLFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIA 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DGM T + +I+ D I +++ L+ N LL Sbjct: 218 IDGMAVKNTDQDDNHGAIISIKKDGRRILLLINGLENNEELLSEVQLL------------ 265 Query: 273 INYIIKDFYQQNLSNEVPNISE 294 INY+ DF + + +V I E Sbjct: 266 INYVYNDFSTKTIFQKVNKIEE 287 >gi|241204717|ref|YP_002975813.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858607|gb|ACS56274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 397 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 23/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D ++PASL KLMT + F L + + L T EYP S Sbjct: 38 MIEAATGTVLLAKNEDQGFSPASLAKLMTMDLAFEALTKGQITLDT---------EYPVS 88 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F M Sbjct: 89 EYAWRTGGAPSRTATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSM 148 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 149 TRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKI 208 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 209 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEAKR 268 Query: 259 LLSMGFYNKTDRK 271 +L G +R+ Sbjct: 269 VLEWGLTAFENRQ 281 >gi|182414513|ref|YP_001819579.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1] gi|177841727|gb|ACB75979.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1] Length = 341 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 133/282 (47%), Gaps = 27/282 (9%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ ML+ P L++A K P + D TG+V+ E D PAS+TKL Sbjct: 12 LVCAVMLT---PMLALAAPKKAPKAEPTFKGAIVTDAATGNVLLEQNADVVTPPASMTKL 68 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT V+ LK L T + I + + + T++ + ++++SAND Sbjct: 69 MTFAVLSDKLKSGALTLGTVVQIEPEDARMGGTQVFLDPRESFTVEELIYAMMIQSANDA 128 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYTTARDMAIL 173 + A+A + FV+ MN ++ LG++ T F + HG+ V G TT RD + L Sbjct: 129 SYALARVSAGSVPAFVELMNAKARELGMTQTTFRSPHGLPPKSRRVSEGDLTTPRDFSRL 188 Query: 174 SWR--IKTDFPQY--MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + TD +Y + + ++ N N +G G DG+KTG+T +G+ + Sbjct: 189 CRHLLLNTDVLKYSSVKHRVFGPQRATPQQMKNHNNLLGKVAGVDGLKTGYTEGAGYCLS 248 Query: 230 ASAIQGDQSLIAVILGALDRN-------TRNKVSASLLSMGF 264 A+A++ D+ +I VI+GA N +R++ + LL GF Sbjct: 249 ATALRNDRRVIVVIMGAFGPNGQKDLGRSRDRKTIELLERGF 290 >gi|220928795|ref|YP_002505704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219999123|gb|ACL75724.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 440 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 39/299 (13%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L +II++ +L + P S Y L+D TG V+ E+ PD W PAS TK Sbjct: 1 MKKVLATLIISLTILLQVSPAFSANLDIDAASYILMDAKTGSVLYEHKPDLKWRPASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 + TA V K+ + +T S A N G M+L++ L L++ S Sbjct: 61 IATALVAL-----KEGNMDQVMTASNEAVTDIGVGGMNIGIMPGEQMSLNDLLHALLIVS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----GHYTTARDMA 171 AN+ A I+E+L + KF++ MN S +G T F N G+ ++ H+++ARD+A Sbjct: 116 ANETANIISENLYNDKSKFLEEMNKVSAEVGAKNTTFTNPSGIDEYEKDANHFSSARDLA 175 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--------------GTFLGAD--- 214 +++ +P + + K L + + W V G G D Sbjct: 176 LIAKEC-LKYPVFREIVEQKQLNMLPPTNKHKTWNVLNTTNKLLGQSFKYGPETGDDRNQ 234 Query: 215 ----GMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRN--KVSASLLSMGFYN 266 G+KTG T +G N ++SA+ D LI+V+LG ++ R+ + +LL+ G+ N Sbjct: 235 FTITGLKTGSTLRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLTAGYEN 293 >gi|209549400|ref|YP_002281317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535156|gb|ACI55091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 431 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 23/246 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D ++PASL KLMT +VF + + + T EYP S Sbjct: 72 MIEAATGTVLLAKNEDQGFSPASLAKLMTMDLVFDAVTKGQITFDT---------EYPVS 122 Query: 93 NSTFKKG--------------STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 ++ G S + +++ +K + ++ AND + +AE + +E++F + M Sbjct: 123 EYAWRTGGAPSRTATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESM 182 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 183 TRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQKSYPNLYPYFAQPDFEWNKI 242 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N +G LGADG+ TGFT G++IVAS + + L + G R + + Sbjct: 243 FQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFLALAGVASDKERTEEAKR 302 Query: 259 LLSMGF 264 +L G Sbjct: 303 VLEWGL 308 >gi|163940275|ref|YP_001645159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163862472|gb|ABY43531.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 434 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 43 LVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK + Sbjct: 103 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFEME 162 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I K Sbjct: 163 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 222 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 KG KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 223 FQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIK 282 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 283 ANSHTARFDETKKLYDYGFAN 303 >gi|228955638|ref|ZP_04117636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804007|gb|EEM50628.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 423 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM +LS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGASFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|322372917|ref|ZP_08047453.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150] gi|321277959|gb|EFX55028.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150] Length = 448 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 29/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 L+D NTG V+ E D +PAS++K MT Y+VF + + + T IT + A Sbjct: 49 LIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIAEI 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 Y SN+ G T+ + + V S+N V +A L + K++ MN SK LG+ Sbjct: 109 YEISNNKIVAGVQYTVSELITMTAVPSSNVTTVMLANYLTNNDPDKWIDKMNEKSKELGM 168 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKG 192 + T + NA G V G+Y TTARD+AI+++ +P+ ++Y Sbjct: 169 THTKWYNASGAVAVAFKGYYNPQRYDINQTNQTTARDLAIMTYNFIKKYPKILNYTDKPV 228 Query: 193 LEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + KG Y T N+++ G DG+KTG + FN + + +GDQ +IAVI Sbjct: 229 VTVKKGTPYEETFETYNYSIPGAKYGIKGVDGLKTGSSPEGAFNYINTIKRGDQRMIAVI 288 Query: 244 LGALD 248 +G+ D Sbjct: 289 MGSGD 293 >gi|228936676|ref|ZP_04099469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823015|gb|EEM68854.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 423 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++ +AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSITLAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|253682141|ref|ZP_04862938.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] gi|253561853|gb|EES91305.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] Length = 377 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 123/258 (47%), Gaps = 18/258 (6%) Query: 4 FLVIIAMAMLSNI---FPFLSIAETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPAS 55 ++++M +L NI + +I NKL Y +D+ T V+ E D AS Sbjct: 7 IFMVLSMCLLFNITFAYNVQAITPKNKLIYINARSAIAIDSKTKCVLYEKNSDMLLPIAS 66 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MT V + L +S A+ S +KKG +++L L L+++S Sbjct: 67 TTKIMTTLVALKY-----GNLDDKFEVSSKAANIRGSQVGYKKGESISLKELLYGLMLRS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A+ IAE L + +KF + MN + +G +HF + HG+ HY+TA D+A ++ Sbjct: 122 GNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFESPHGLDSQNHYSTAYDLARITA 181 Query: 176 RIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + K + + +K +E K + Y N N + A+G+KTG+T +G +V S Sbjct: 182 KAKEN-ELFNKIVAVKDVEAKEYGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCLVTS 240 Query: 232 AIQGDQSLIAVILGALDR 249 D +I V+L R Sbjct: 241 VKDNDDDIIIVVLNCTPR 258 >gi|307292800|ref|ZP_07572646.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium chlorophenolicum L-1] gi|306880866|gb|EFN12082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium chlorophenolicum L-1] Length = 387 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 13/272 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ + +LS + T++ P L D ++G V+ + + PAS+ K+MTA+V Sbjct: 7 ALLFVGLLSQPLTAAAPPYTSEAPIAYLKDMSSGAVLYDKGGETRMPPASMAKMMTAHVA 66 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNST--FKKGSTMTLDNALKLLIVKSANDIA 120 F +++ L T+ + P + ST G ++++N L ++ S ND Sbjct: 67 FRLIQKGDLKLDQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTLSGNDAC 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKT 179 V +AE + TE+ FV MN +K LGL ++F ++G G Y TA D+A L+ Sbjct: 127 VVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLASLAEATIE 186 Query: 180 DFPQ-YMHYFQIK----GLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + P Y ++ + G + G + N N +G GADG+KTG T +G+ SA Sbjct: 187 ETPSLYKKFYATRAFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTEEAGYGFTGSA 246 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 Q + L+ V+ G N R S + GF Sbjct: 247 EQEGRRLVMVVAGLTSANQRIAESVRFMDWGF 278 >gi|218235920|ref|YP_002367173.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264] gi|218163877|gb|ACK63869.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264] Length = 437 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 35/279 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 46 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFP+ ++ +I K + Sbjct: 166 DYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKI 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 226 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 A R + L GF N+ +K+FY ++ Sbjct: 286 AKSHTARFDETKKLYDYGF--------ANFEVKNFYGKD 316 >gi|325478993|gb|EGC82094.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii ACS-065-V-Col13] Length = 403 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 Y + + TG + E D ASLTKLMT Y+V ++E K L T + K A E Sbjct: 41 YLIGNEETGDIYYEKNADEVRPIASLTKLMTFYLVRDAIEEGKISLDTNVKADKRAEELT 100 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S+ K+ T +++ L+ LI S ND A +A+++ +E+ F + MN +K LGL Sbjct: 101 SWEYSSLGLKENETYSVEELLQGLIAVSGNDCAHLLAKAVSGSEEAFTKKMNEKAKELGL 160 Query: 148 SATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPN 202 + + NA G+ + ++ARD+ LS + +P ++Y + + I GK K + Sbjct: 161 ESQKYYNASGIDTEDDKENVSSARDLYKLSMDLVKKYPDILNYSSMDEVNIPGKGIKKDS 220 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVAS----AIQG--DQSLIAVILGALDRNTRNKVS 256 T G DG+KTG T +G+ ++ + + G D + V+LGA +++ R+ V Sbjct: 221 TIPLKNEIDGVDGLKTGTTEKAGYCLITTLDMKELDGNDDFRCLGVVLGADEKDIRDSVM 280 Query: 257 ASLL 260 + L+ Sbjct: 281 SDLI 284 >gi|315644414|ref|ZP_07897547.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] gi|315280164|gb|EFU43457.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] Length = 472 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ D PAS+TK+MT Y+V +K+ + +++ +NA + S Sbjct: 86 LIEPSTGQVLLSVNADEALPPASMTKMMTEYIVAEKVKQGELAWDEMVSVKENAEKTVGS 145 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T++ + V SAND VA+AE + +E++FV MN+T+K +GL F Sbjct: 146 RIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEEEFVTLMNDTAKKMGLKTAFF 205 Query: 153 MNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 +N+ G+ + +A D A+L+ I D P + + I+ + + + Sbjct: 206 INSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKFIVEDHPDFARFTAIQSHKFRPRDT 265 Query: 200 YP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +P N NW + + G DG+KTG T A+ + +A + LI+V++G Sbjct: 266 HPIINYNWMLEANKDITNFKKYAYEGLDGLKTGHTNAAKYCFAGTAERDGMRLISVVMGT 325 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R S +L GF N Sbjct: 326 KSEGARFVESKKVLDYGFDN 345 >gi|325290352|ref|YP_004266533.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] gi|324965753|gb|ADY56532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] Length = 292 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 15/240 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E PAS TK+MTA + K + +T+S+ A S Sbjct: 58 LMDAQTGEVLYERQSRKVSPPASTTKIMTAILALELSKGDEI-----VTVSEKAGAVGES 112 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + KG + + ++ +VKS ND VAIAE T FV+ MN +G THF Sbjct: 113 SIYLNKGDKIKMSELIEGALVKSGNDACVAIAEQTAGTVDSFVELMNKKVLTIGGYNTHF 172 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWA 206 +N +G+ HY+ A D+AI++ R Q+ + K I K +++ NTN Sbjct: 173 VNPNGLPAKNHYSCAYDLAIMA-RYALQNDQFSELVKTKYASISFDEPPKIEQFKNTNKL 231 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ++ G+KTG T +G +VASA + ++ LI V+L A DR S L + GF N Sbjct: 232 LWSYPFTSGVKTGTTNEAGKCLVASANKENRKLICVVLNAPDRYGD---SQKLFNWGFGN 288 >gi|75758555|ref|ZP_00738675.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493989|gb|EAO57085.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 434 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K +GL F+ Sbjct: 114 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 173 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM IL+ I T +P+ + + Sbjct: 174 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 233 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 234 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 294 ERFTESRELIEHGFNN 309 >gi|167037551|ref|YP_001665129.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115966|ref|YP_004186125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856385|gb|ABY94793.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929057|gb|ADV79742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 382 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E P AS TK+MT V +K L +T+SK A+ S Sbjct: 38 VMDQETGRVLYEKNPHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + F++ MN ++ +G THF Sbjct: 93 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVENFIEIMNQKAREIGAYNTHF 152 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +G+++ N N Sbjct: 153 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGREWDRYLRNKN 211 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 212 KLLWIYEGADGVKTGFTNKAGRCLVSSASREGRRFIAVVL 251 >gi|157150235|ref|YP_001450989.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis substr. CH1] gi|157075029|gb|ABV09712.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis substr. CH1] Length = 412 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 36/289 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ +V++ + + +S +A N + + D NTG ++ E P S Sbjct: 1 MKKIIVLLFTCLFCSFCTLVSADDFDVAAKNAIAF----DVNTGKILYEKEATTPVPIGS 56 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLL 111 LTKL++AY+V+ +K +K + + + IS+ A + Y SN KGS +++ L+ Sbjct: 57 LTKLLSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGS-YSVEELLEAS 115 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 ++ +AN +A+AE + +EKKFV M K G+S +N+ G+ Sbjct: 116 LIANANSATIALAEKIAGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNS 175 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYPNTNWAVGTFLG 212 + +A DMA++S+ + D+PQ ++ F GLE+ Y + G Sbjct: 176 KKDEENQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMP-SYRKG 234 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG + G + +ASA + D LI V+L N + A L+ Sbjct: 235 VDGLKTGISDQGGLSFIASANERDMRLITVVLNV--ENAEEDIKALFLA 281 >gi|94264946|ref|ZP_01288718.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium MLMS-1] gi|94267812|ref|ZP_01290999.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium MLMS-1] gi|93451851|gb|EAT02592.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium MLMS-1] gi|93454602|gb|EAT04877.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium MLMS-1] Length = 359 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 10/216 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G +I PD P PAS K++TA + L+E AM+ T S+ A++ P S Sbjct: 96 VIDAASGRLIYSLNPDTPRQPASTIKVITALIALDSLREH-AMVPT----SRRAAQMPRS 150 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + + + ++++SAND AVA+AE + E+ F + M + + +G + T Sbjct: 151 KVYLQQGRSYRAGDLVDAILMRSANDAAVALAEKIAGNERAFARLMTSKVRAMGANNTTL 210 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 NA+G+ G +TARD+A++ R + Q + GL G+ +N A+ Sbjct: 211 RNANGLTAQGQQSTARDLALILHRAMEHPELAQRLGTVSTNGL---GQTMRTSNRALWQI 267 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ G KTGFT A+ V +G+ LI ++G+ Sbjct: 268 NGSQGGKTGFTRAAQQTYVGKFQRGNHELIVALMGS 303 >gi|332977394|gb|EGK14172.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 377 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 10/219 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ E ASLTK+MTA V + + LT + + A S Sbjct: 41 VIDVQSGRILYEKKAGQQMRIASLTKIMTAIVAI-----ENSDLTEKVKVKPGAVGVEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G + L++ L L+++S ND AVAIAE + + + FV MN ++ LGL THF Sbjct: 96 SIYLKPGEEIPLEHLLYGLMLRSGNDAAVAIAEHVGGSVEGFVYKMNEKAEYLGLRNTHF 155 Query: 153 MNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAV 207 N HG+ HY++A D+A L ++ +K + + Q+K + G +K+ N N + Sbjct: 156 QNPHGLDAKEHYSSAEDLARLTAYALKNPEFRKIVSTQVKTVPWPGEEWHRKWYNKNKML 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G DG+KTGFT S +V+SA + + + V L A Sbjct: 216 RLYPGGDGVKTGFTKLSRRTLVSSATREGRQIATVTLNA 254 >gi|228903867|ref|ZP_04067982.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228855776|gb|EEN00321.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 423 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K +GL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 N+ G+ +H T +ARDM IL+ I T +P+ + + Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A ++ G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEHGFNN 298 >gi|256752045|ref|ZP_05492913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|256749055|gb|EEU62091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] Length = 379 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E P AS TK+MT V +K L +T+SK A+ S Sbjct: 35 VMDQETGRVLYEKNPHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + F++ MN ++ +G THF Sbjct: 90 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVENFIEIMNQKAREIGAYNTHF 149 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +G+++ N N Sbjct: 150 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGREWDRYLRNKN 208 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 209 KLLWIYEGADGVKTGFTNKAGRCLVSSASREGRRFIAVVL 248 >gi|319654383|ref|ZP_08008470.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2] gi|317393882|gb|EFV74633.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2] Length = 389 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 29/280 (10%) Query: 1 MRQFLVIIAMAMLSNIF---------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M+Q +V+I +A L + F P +S L+D NTG ++ E Sbjct: 1 MKQVIVLIFIASLFSGFQKTIHASDSPVVSSGSA------ILIDANTGEILFEKKATEEM 54 Query: 52 NPASLTKLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PASLTK+ TA Y + +K L ++I N + + ++G ++L ++ Sbjct: 55 YPASLTKIATAIYAI------EKGNLNDIVSIGSNPRKIEGTRVYLEEGERVSLRKLIQG 108 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND VAIAE + + + F +++N+ LGL T FMN HG+ H TTA D+ Sbjct: 109 LLINSGNDAGVAIAEHMDGSIETFSKNLNSYLAGLGLKNTVFMNPHGLFNPEHVTTAEDL 168 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL------GADGMKTGFTCAS 224 A L+ + + ++ F K LE KG + T + + G G KTG+ S Sbjct: 169 ATLT-QYAMENQEFSEIFGTKELEWKGATWKTTLYTHHKLMRELPYEGVIGGKTGYVDQS 227 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G +V +A + + SLI V L A + + LL GF Sbjct: 228 GHTLVTAAKRKELSLIVVTLNASSQELAYDDTKKLLDYGF 267 >gi|85708665|ref|ZP_01039731.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1] gi|85690199|gb|EAQ30202.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1] Length = 403 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 6/252 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 +LP L+D +G V+ D + PAS+TK+MT + F ++E + +S Sbjct: 52 ELPIALLVDVTSGQVLYSRNADRRFVPASITKVMTLFHAFELIEEGDLDPRQTLVMSDEV 111 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 E+ ST G + +D+ L + SAND + +AE + ++ MN ++ Sbjct: 112 WEEWGGEGSTMWINAGDRVAVDDLLTGIANISANDGSAMLAEGQAGSISAWLDGMNQRAR 171 Query: 144 NLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYP 201 +L + +HF +G G +TTA D+ L+ + + PQ Y Y G + Sbjct: 172 SLEMVNSHFGTPNGWPDEGRTFTTASDLVKLAQALISRHPQKYARYIGKPGFRYNDIEQF 231 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + +G GADG+KTG+T SG V SA + Q L+ V+ G + R + + L+ Sbjct: 232 NRDPMIGRVAGADGIKTGYTNESGLGYVGSAKRDGQRLVVVVAGISRGSIRARAARDLIE 291 Query: 262 MGFYNKTDRKKI 273 GF + DR+++ Sbjct: 292 WGF-DAFDRERL 302 >gi|229112950|ref|ZP_04242457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228670493|gb|EEL25829.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] Length = 442 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 35/279 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYEKSADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFP+ ++ +I K Sbjct: 171 DYKFVNSTGLTNQDLKGYHSEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 A R + L GF N+ +K+FY ++ Sbjct: 291 AKSHTARFDETKKLYDYGF--------ANFEVKNFYGKD 321 >gi|319404207|emb|CBI77800.1| Penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 390 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 116/246 (47%), Gaps = 27/246 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 +LD NT ++ E D + PASL KLMTA VVF LK+ T +S+NA Sbjct: 35 ILDDNTDTILFEKQSDIVFFPASLAKLMTAEVVFYQLKKGFLNKTQKFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L L++ + ND AV +AE + E F + MN +K LGL Sbjct: 95 PSGTTTMFAKEKTEISIFDLLHGLVIVNGNDAAVILAEGIAGNEANFAKLMNKRAKTLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF+NA G+ + G +TT RD+ L I ++P Y + + PN W Sbjct: 155 LHSHFVNATGLPEKGQFTTLRDIITLVRHIAREYPDYYALY----------REPNFTWNK 204 Query: 208 GTF------------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 T + +G+ G++ GF+ V SA Q + I G ++ R K Sbjct: 205 ITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAYNNQQRIFLAINGLQNKQERTKE 264 Query: 256 SASLLS 261 +L Sbjct: 265 VKRILE 270 >gi|196040350|ref|ZP_03107651.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|196028835|gb|EDX67441.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] Length = 338 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E KF Q MN +K+L LS + Sbjct: 100 PIQVTSKDKTTVR--DLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A QGD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKQGDTRLISVILDAENENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|229158950|ref|ZP_04287007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228624561|gb|EEK81331.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] Length = 423 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 27/256 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+K T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKSRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW A + G DG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYN 266 R S L+ GF N Sbjct: 283 ERFTESRELIEYGFNN 298 >gi|207582659|gb|ACI24891.1| D-alanyl-D-alanine carboxypeptidase-like protein [uncultured bacterium] Length = 179 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 83/139 (59%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G+V+ EN D PASLTKLMTAY+ ++ + P+T+S+NA Sbjct: 39 YVLMDASSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K G+ +++ + L +I++S ND +VA++E + +E F MN T+ LG+S + Sbjct: 99 GSRMFIKVGTQVSVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMNKTAGELGMSNS 158 Query: 151 HFMNAHGVVQHGHYTTARD 169 HFMN G+ HY++A + Sbjct: 159 HFMNPTGLPNPDHYSSAPE 177 >gi|317122120|ref|YP_004102123.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315592100|gb|ADU51396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 578 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 118/241 (48%), Gaps = 19/241 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E D AS TK+MTA L ++ L IT S+ A S Sbjct: 189 LVDAATGQVLYERNADATMPMASTTKIMTA-----LLAIERGDLRQVITTSERAFGVEGS 243 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TL+ L L+++S ND AVAIAE L + + FV MN ++ LGL T F Sbjct: 244 SLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVDWMNRRAQELGLEHTRF 303 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NT 203 + HG+ HYT+ARD+A L+ R+ P + +I G +P N Sbjct: 304 ADPHGLASRDHYTSARDLATLA-RVAMANPTFR---RIVGTREYRMPWPEKQSERVLYNH 359 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + + GA G+K G+T A+ +VASA + LI V+LGA + A+L+ G Sbjct: 360 NRFLWRYEGATGVKNGYTSAARGALVASAQRDGVELIGVLLGAHPTGMYRDM-AALMDWG 418 Query: 264 F 264 F Sbjct: 419 F 419 >gi|260890742|ref|ZP_05902005.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia hofstadii F0254] gi|260859620|gb|EEX74120.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia hofstadii F0254] Length = 423 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 20/283 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTK 58 R +I++MA L+ LS A + Y +LL D N G++I E+ AS+TK Sbjct: 21 RSKKIIMSMAFLT--VSALSFASGEDYYDYKSLLIGDIN-GNIIKEDNSSAVRPLASVTK 77 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT+ + +K + +T+S A+ P G T+ + LK I+KS+N+ Sbjct: 78 IMTSILTLDKIKNGQISYEDKVTVSAKAASVPYG-IKLTAGKQYTVRDLLKATIIKSSNN 136 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDM 170 A A+AE + FV MN +++ GL++ + + HG+ + G+ A+D+ Sbjct: 137 AAYALAEYVGGDVSNFVHSMNEKARSYGLNSLRYCSPHGLPPSYTGSCMDQGN---AKDL 193 Query: 171 AILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 L+ D+ +Y+++ + K ++ K +TN +G LG DG+KTG+ A+G NI Sbjct: 194 YKLAQITLKDYSEYLNFSKNKTDYVDNGNTKVTSTNALLGNVLGVDGIKTGYHDAAGSNI 253 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 V +A +G+ +IA+ILG+ RN + A ++ + N RK Sbjct: 254 VLTANRGNDRMIAIILGSNRAKDRNAIGAKEINDYYANGYARK 296 >gi|227499916|ref|ZP_03930009.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius ATCC 35098] gi|227218025|gb|EEI83298.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius ATCC 35098] Length = 402 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 16/273 (5%) Query: 4 FLVIIAMAMLSNIFPFLS--IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L ++ + M IF + + + + Y + + TG V E D ASLTKLMT Sbjct: 11 LLTLVFLLMPGEIFAAQTRVVGLDSNVSSYLIGNEETGDVYYEKNADEARPMASLTKLMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +V ++E K L T + K A E + S+ K+ + +++ L+ LI S ND Sbjct: 71 FLLVRDAIEEGKINLNTSVKADKKAEELTSWEYSSLGLKEKESYSVEELLQGLIAVSGND 130 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---HYTTARDMAILSW 175 A +A+++ +E+KF MN +K LGLS+ + NA G+ + ++ARD+ LS Sbjct: 131 CAYLLAKTVAGSEEKFATLMNEKAKELGLSSQKYYNASGIETKDNKENQSSARDLFKLSS 190 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASA- 232 I +P + Y + + I GK T+ G DG+KTG T +G+ +V + Sbjct: 191 FIVRKYPDILRYSTMDEVNIPGKGIRKTSTIPLRKDIKGVDGLKTGTTDKAGYCLVTTVD 250 Query: 233 ---IQG--DQSLIAVILGALDRNTRNKVSASLL 260 + G D I V++GA ++TR V + L+ Sbjct: 251 MKELDGSDDFRCIGVVMGADQKDTRESVMSDLI 283 >gi|213582478|ref|ZP_03364304.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 242 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N F K+G +++ + + LIV S ND VA+A+ + + +FV MN+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYV 158 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K L L THF HG+ G +++A D+A+LS I P++ H + K L G N Sbjct: 159 KKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN 218 Query: 203 TN---WAVGTFLGADGMKTGFTCASG 225 N W + DG+KTG T +G Sbjct: 219 RNGLLWDKTMHI--DGLKTGHTSGAG 242 >gi|228477469|ref|ZP_04062105.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius SK126] gi|228250904|gb|EEK10092.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius SK126] Length = 448 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 119/245 (48%), Gaps = 29/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 L+D NTG V+ E D +PAS++K MT Y+VF + + + T IT + A Sbjct: 49 LIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIADI 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 Y SN+ G T+ + + V S+N V +A L + K++ MN SK LG+ Sbjct: 109 YEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELGM 168 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKG 192 + T + NA G V G+Y TTARD+AI+++ +P + Y Sbjct: 169 TNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAIMTYNFIKKYPDILKYTSKPV 228 Query: 193 LEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + KG Y T N+++ G DG+KTG + FN + + +GDQ +IAVI Sbjct: 229 VTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPEGAFNYIDTIKRGDQRMIAVI 288 Query: 244 LGALD 248 +G+ D Sbjct: 289 MGSGD 293 >gi|260881606|ref|ZP_05404816.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260848369|gb|EEX68376.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 399 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 13/243 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ + PAS+TK+MT + L ITIS+ A+ Sbjct: 55 LIDADTGRVLWSKNGEERHYPASMTKMMTCLLGIQLLPPDAK-----ITISQAAASTEDL 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T + ++ +++ S N AVAIAE + + F + MN ++ LG+ THF Sbjct: 110 PLHIARGDVLTSEELMRGMMMVSDNGAAVAIAEHIDGSAAVFAERMNEKAQELGMVNTHF 169 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKY--PNTNW 205 N +G+ HY+T DMA L+ + P + + + K + GK NTN Sbjct: 170 ANPNGLTDPNHYSTPHDMARLA-QYAMKNPVFRDFVRQKERRVTWIAPAGKTLLAENTNE 228 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G + G G+KTG+T A+G + ASA + LIAV++ A + R ++L GF Sbjct: 229 LLGHYEGITGIKTGWTSAAGGCLAASAERQGVHLIAVLMKAPSEDARFPEMRAILDYGFA 288 Query: 266 NKT 268 N T Sbjct: 289 NVT 291 >gi|319947350|ref|ZP_08021583.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] gi|319746592|gb|EFV98852.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] Length = 444 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 33/268 (12%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P + N+ ++D NTG V+ ++ D +PAS++KLMT Y++F +KE Sbjct: 29 MAQKMYPNDHVQAYNRPRSSLVIDANTGDVLWKDNIDEVRDPASMSKLMTLYLLFESMKE 88 Query: 72 KKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K +T ++ A++ Y SN+ G T+ + + V S+N + +A Sbjct: 89 GK--ITKDTVVTATAADQSMSKIYEISNNNIVAGVDYTVSELITMTAVPSSNVATIMLAN 146 Query: 126 SLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARD 169 L + F+Q MN SK LG++ T + N G G Y TTARD Sbjct: 147 LLSNHDADAFIQRMNEKSKELGMTNTIWNNPSGAAISTFQGLYTSYNYPNDAANQTTARD 206 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNT----NWAVG----TFLGADGMKTGF 220 +AIL + ++P+ + Y + +K G Y T N+++ G DG+KTG Sbjct: 207 LAILVYHFVKEYPEILSYTNQAKVTVKQGTPYEETFDTYNYSLPGARYALEGVDGLKTGS 266 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 + FN +A+A +G+Q +I+V++G D Sbjct: 267 SPRGAFNYIATAKRGEQRIISVVMGVGD 294 >gi|315186124|gb|EFU19886.1| Serine-type D-Ala-D-Ala carboxypeptidase [Spirochaeta thermophila DSM 6578] Length = 387 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 16/245 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF----LKEKKAMLTTPITISKNASE 88 LL+ T V+ E D P ASLTKL+TAY+ L ++ A+L P +++ Sbjct: 29 LLEPTTRTVLYEKQADLPHPAASLTKLVTAYLALQAVEDGLLQEDALLPVPSALAR--IP 86 Query: 89 YPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +PP S G+T+T L L ++ SAND A A+A L F MN +G Sbjct: 87 FPPDASLAGLAPGTTLTPAQLLSLTLIYSANDAAYALALLLAPDIPAFASRMNRLVHAMG 146 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-MHYFQIKGLEIKGKKYPNTNW 205 + F G+ + TAR++A+ + FP Y + L + G+ Y N N Sbjct: 147 YTHLFFEEPSGLSPR-NTITAREIALFAADYLDRFPSAPARYHAPRALTVGGRTYLNRNT 205 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASL 259 +G + G +G+KTG+ SGF+IVA A +G SLIAV+LG R++ +A+L Sbjct: 206 LLGRYPGLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPGYWEGMQERDRQAAAL 265 Query: 260 LSMGF 264 L GF Sbjct: 266 LDYGF 270 >gi|307267584|ref|ZP_07549057.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917391|gb|EFN47692.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E AS TK+MT V +K L +T+SK A+ S Sbjct: 83 VMDQETGRVLYEKNSHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 137 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + FV+ MN +K +G THF Sbjct: 138 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHF 197 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +GK++ N N Sbjct: 198 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFTEIVSTKEKTIPWEGKEWDRYLRNKN 256 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 257 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 296 >gi|254518751|ref|ZP_05130807.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] gi|226912500|gb|EEH97701.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] Length = 389 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 26/262 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++T+ + ++ L +TISKNAS S +K G +T+ L L+ Sbjct: 91 ASTTKILTSLIAINY-----GDLDRIVTISKNASSIRGSTVGYKAGEKITMRELLFGLMF 145 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+AIAE + + + F MN+ +++LG+ +HF + HG+ HY++A D+AIL Sbjct: 146 RSGNDAAIAIAEDIGGSVENFSNIMNDFARSLGIIDSHFESPHGLDSAKHYSSAYDLAIL 205 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGK-------KYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + +Y + +I G ++ K Y N N + GA+G+KTG+T +G Sbjct: 206 TAK----GMEYDVFREIVGEKVIYKDKYNFTRDYQNINKILYRIPGANGVKTGYTGGAGK 261 Query: 227 NIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +V+S +++I V+L +DR N K+ ++S + + K I ++NL Sbjct: 262 CLVSSVNHNGRNIIIVVLNCVDRWNVTEKIFNYVISTNTFAEISNKDI------LQRENL 315 Query: 286 SNEVPNISEEVCT---TQKEII 304 + I EE T +K+I+ Sbjct: 316 AGLGNIIQEEDITYGYKEKDIV 337 >gi|52081783|ref|YP_080574.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52787169|ref|YP_092998.1| hypothetical protein BLi03478 [Bacillus licheniformis ATCC 14580] gi|319647699|ref|ZP_08001917.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2] gi|52004994|gb|AAU24936.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52349671|gb|AAU42305.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317390040|gb|EFV70849.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2] Length = 384 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 22/279 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLT 57 R L II + + E NK + L+D +G V+ E PAS+T Sbjct: 5 RSLLFIIVLCLTLFFHSSAQAGEKNKPEIKSVSAILIDGKSGQVLYEKNSRKKMYPASIT 64 Query: 58 KLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 K+ TA Y + + L + +SKNA++ S+ ++G ++ L L+ L++ S Sbjct: 65 KIATAIYAI------ENGNLEDRVKVSKNAAQTEGSSVYLEEGESVPLKRLLQGLLMNSG 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILS 174 ND AIAE L + K+F +N +++ G+ THFMN HG+ HYTT+ DMA I Sbjct: 119 NDAGTAIAEHLSGSVKQFADDLNAFIAEHAGVHDTHFMNPHGLFDKNHYTTSADMARITE 178 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNT-----NWAVGT--FLGADGMKTGFTCASGFN 227 + +K + F K + G+ + T G + G G KTGF S Sbjct: 179 YAMKN--KTFRALFSEKQTDWHGQTWDTTLKNHHRMLTGEIPYKGITGGKTGFVDESKHT 236 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +V +A +G LIAV++ A + + +LL GF+N Sbjct: 237 LVTTATRGSLDLIAVVMKADSKKMMYSDTKALLDEGFHN 275 >gi|302871919|ref|YP_003840555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] gi|302574778|gb|ADL42569.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] Length = 373 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 109/218 (50%), Gaps = 14/218 (6%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG ++ + D AS TK+MTA +V K I I A P S+ + Sbjct: 44 TGKILFKKNEDLKLPMASTTKIMTAILVLENCDVNKE-----IEIPPQAVGVPGSSMYLE 98 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG + + + L L++ S ND AVA+A KKFV MN +K LGLS T F + HG Sbjct: 99 KGEKLKIIDLLYGLMLSSGNDAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHG 158 Query: 158 VVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTF 210 + Q HYTTA D+A+L ++ +K P + + E+ P N N + + Sbjct: 159 LEQGQHYTTAHDLALLTAYAMKN--PIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLY 216 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 GA+G+KTGFT +G +V SA + D +I V+L A D Sbjct: 217 PGAEGVKTGFTKKAGRCLVTSACRDDFRVICVVLNAQD 254 >gi|269102001|ref|ZP_06154698.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161899|gb|EEZ40395.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 285 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G T+ + + + +IV S ND VA+AE + +++ FV MN +KN+G+ +TH+ N HG+ Sbjct: 6 GKTVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNAWAKNVGMKSTHYANVHGL 65 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADG 215 YTT D+++L+ I D P + K G N N W L DG Sbjct: 66 DNPDLYTTPYDLSLLARAIIRDTPNEFKIYSEKSFTYNGITQYNRNGLLWDKS--LNVDG 123 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 MKTG T +G+++V++A +G LI+V++G N R S LL+ GF Sbjct: 124 MKTGHTNNAGYSLVSTATEGKMRLISVVMGTKSPNARKAESKKLLNYGF 172 >gi|237747199|ref|ZP_04577679.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS] gi|229378550|gb|EEO28641.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS] Length = 383 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 12/245 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D + +KLMTAY+VF L++ + L PI +S+ + Sbjct: 35 WLLMDVVSNQVLASKNADDRIASRTASKLMTAYLVFGALRDGRVSLDQPIVVSEQVARLG 94 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + G T T+ L LIV+ +D A+A+A ++ EK FV+ MN + LG+ Sbjct: 95 TGGPEMFLQNGGTATVRELLLGLIVRGGDDAALALAIAVSGDEKTFVELMNREAVRLGMK 154 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---W 205 +T F + +G Y+T DMA+L+ + DF Y +F K G + N N W Sbjct: 155 STLFAHPYGSSGKEGYSTPSDMAVLALGVMRDFSDYSSFFSTKEFSYNGIRMRNGNRLLW 214 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASA----IQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DG+ + + ++ASA + G++ +++++ GA+ R + S LL+ Sbjct: 215 LDGA---VDGLFATNSPEESYTLLASAKRDSVLGERRMLSIVTGAVSDQARMQESLKLLN 271 Query: 262 MGFYN 266 GF N Sbjct: 272 WGFQN 276 >gi|307942276|ref|ZP_07657627.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] gi|307774562|gb|EFO33772.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] Length = 389 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 18/280 (6%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86 P L++ TG V+ + + PA L+++MTA VF LK+ + +S++A Sbjct: 36 PMAFLMEVKTGSVLYAKAAEKTFQPAGLSRIMTAATVFKALKDVEVTEAQECKVSEHAWR 95 Query: 87 -SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +T + GS++++ + LK L+V A+D A+ +AE L EK F M ++ Sbjct: 96 TGGAPAGGTTMFAELGSSISVLDLLKGLLVHQAHDAAIILAECLDGDEKTFADRMTAYAR 155 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F++ G G TT DMA L + + +FP F + N Sbjct: 156 EIGLTNSQFLSPAGFDVDGAATTVEDMATLGFHMLQEFPDRYPLFALNEFTWNDIYQRNR 215 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G G DG+ TG + GF +AS + + +IAV+ G+ R K ++ Sbjct: 216 NPLIGEMRGLDGLGTGSSEKGGFASLASLNRDGRRVIAVVAGSPSAKARIKALKQVVDGA 275 Query: 264 F--------YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + Y+K D + + + +EVP I+E Sbjct: 276 WDYFSVRQLYSKGDVVAMARVFG-----GIESEVPLIAER 310 >gi|304406992|ref|ZP_07388646.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304343979|gb|EFM09819.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 406 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 119/245 (48%), Gaps = 27/245 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G ++ D P ASLTK+MTA V + L + +S A+ Sbjct: 54 AIIDVESGRLLYSKNGDEPMRIASLTKIMTAIVAI-----ENGNLADKVKVSVRAAGKEG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ + G M L++ L L+++S ND A AIAE + + FV+ MN ++ +GL + Sbjct: 109 SSIYLRAGEVMKLEDMLYGLMLRSGNDAATAIAEHVGGSIDGFVKMMNEKAEWIGLKHSR 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNW----- 205 FMN G+ + GH +TA D+A L T + + F I +K PN W Sbjct: 169 FMNPSGLDEDGHLSTANDLAKL-----TAYALHNPTFAAIVKTRVKKAPNPNEQWDYSWS 223 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS--ASL 259 + + GADG+KTG+T A+ +V+SA + Q L AV + N RN + S+ Sbjct: 224 NKNKMLAMYEGADGVKTGYTKAALRCLVSSATRNGQQLAAVTI-----NDRNDWADHRSM 278 Query: 260 LSMGF 264 L GF Sbjct: 279 LDWGF 283 >gi|251781774|ref|YP_002996076.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390403|dbj|BAH80862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126581|gb|ADX23878.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 393 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 145/311 (46%), Gaps = 46/311 (14%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +I+E N+ ++D NT ++ ++ D P +PAS++K+ T YV+F L + K + T + Sbjct: 36 TISEVNRPKASIVVDANTSDILWQDNIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTV 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T ++ A Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATETDQAIAKIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD+A L + Sbjct: 156 DRINATAKKLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +PQ + + + + G Y PN + + G DG+KTG + ++ FN Sbjct: 216 YPQIIDFTNQSVVHTMVGTPYEEEFHTYNHSLPNNQFGME---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYN-----KTDRKKINYII 277 + +A +G+ LI +++G D + R+ +L GF + K RKK+ ++ Sbjct: 273 MVTAKRGNTRLITIVMGVGDWSDQNGEFYRHPFVNALTEKGFSDSKSLTKAARKKLEKLV 332 Query: 278 KDFYQQNLSNE 288 ++NL + Sbjct: 333 PQKKKENLPKQ 343 >gi|304407580|ref|ZP_07389232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304343531|gb|EFM09373.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 326 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 125/266 (46%), Gaps = 39/266 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG I + PAS++KLMT VV ++ K +T+S A+ + Sbjct: 44 LIDANTGQTIFAQGANKALPPASMSKLMTELVVLETVRAGKLGWKDQVTVSPYAANVLGA 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 + + G T+ + + V SAND AVA+AE + +E++FV+ MN +K +GLS +T Sbjct: 104 GAGLRNGERHTVKELFESMAVHSANDSAVALAEWIGGSEREFVKLMNEKAKAIGLSDSTV 163 Query: 152 FMNAHGV------------VQHGHYT-TARDMAILSWRIKTDFPQYM------------- 185 F NA G+ G TARD+A+L+ + +P+ + Sbjct: 164 FANATGLSSSDLAMYAQSAAADGETVMTARDVALLARYMIRSYPEVLTITSREAVGLNPG 223 Query: 186 ----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + L + G+++ + G+DG+KTG+T +G+ + +G LIA Sbjct: 224 ASDDAALRTTNLMLPGERF--------AYPGSDGLKTGYTERAGYCFTGTTSRGGTRLIA 275 Query: 242 VILGALDRNTRNKVSASLLSMGFYNK 267 V++GA + R + L +GF K Sbjct: 276 VVMGAESADGRFIETERLYDLGFGEK 301 >gi|326791358|ref|YP_004309179.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326542122|gb|ADZ83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 382 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 16/224 (7%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ +G V+ E P AS TK+MT L +K L +TISK AS PP Sbjct: 36 VLIEQESGRVLYEKNGYEPLAMASTTKIMTC-----ILAIEKGNLLDVVTISKRASSAPP 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 K G L + L L+++S ND AVA+AE + + + F + M +K +G T Sbjct: 91 VKLHLKVGEKQRLGDLLYALMLQSDNDAAVAVAEHIAGSVEAFCEQMTEKAKEIGAEHTS 150 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHY-----FQIKGLEIKGK---KYPN 202 F +G+ GHY +A DM ++ ++ +K P+++ QI + +G N Sbjct: 151 FKTPNGLDAEGHYASAYDMTLIGAYALKN--PEFVKIITTATIQIPTIPTEGSHTYGLQN 208 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N ++ GA+G+KTGFT +G V +A + D LI LG+ Sbjct: 209 KNRFFYSYEGANGIKTGFTNKAGHCFVGAAYKNDMQLIGAALGS 252 >gi|325108452|ref|YP_004269520.1| serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis DSM 5305] gi|324968720|gb|ADY59498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis DSM 5305] Length = 302 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 19/239 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 +T +D TG +I + PAS TK+MT+Y+VF+ E ++ +T S+ A + Sbjct: 39 WTAIDAETGEMIVSHKAGEVLRPASTTKIMTSYLVFNLAAESPEVMEELVTFSRRADKTG 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK---------TEKKFVQHMNNT 141 S+ST ++G +++ L L++ S ND +VA+AE ++FV MN Sbjct: 99 GSSSTVREGEQVSVRELLYGLLLPSGNDASVALAEHFGDRLSPEGEGTAYERFVAAMNRQ 158 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGL 193 + LG++ TH+ N HG+ H TTA DMA L+ +R +Y + Sbjct: 159 AAELGMNDTHYENTHGLDNVKHVTTAADMARLAQAAMQIPDFRKVVRTAEYRTAVTQEDG 218 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 E + ++ NTN + G G+KTG+T +G +V+ + + + LI V+L + R++R Sbjct: 219 EQRVLEWRNTNKLLP--YGYLGVKTGWTTMAGACLVSCSQRDGRELILVVLKSSCRDSR 275 >gi|313682994|ref|YP_004060732.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum kujiense DSM 16994] gi|313155854|gb|ADR34532.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum kujiense DSM 16994] Length = 266 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 20/235 (8%) Query: 23 AETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 AE NK LL D + ++ P +PASLTK+MTA + K L P+ Sbjct: 23 AELNKFKVEALLVKDMTSKQMLYSKEPFKELHPASLTKVMTALLAIEHGK-----LNQPV 77 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 TI++ ++ P+ + +++G + L++ +K ++KS ND A AIA S+ +E+ FV+ MN Sbjct: 78 TITREMTKVEPTIAGYRRGDVIILEDLIKAAMIKSDNDAAKAIAISIGGSEEHFVEMMNA 137 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARD-MAILSWRIK-------TDFPQYMHYFQIKG 192 +K +G++ THFMN G HY+T +D + + + IK + ++ +Y Sbjct: 138 KAKKIGMNHTHFMNPCGYDDKKHYSTPQDLLKMTEYAIKNKKFNDISRLNEHTYY----S 193 Query: 193 LEIKGKKYPNT-NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 L K Y T N + + A G+KTG+T +G ++A A + + + V++ A Sbjct: 194 LNKHRKFYAYTHNRLLNRYQYAVGVKTGYTAKAGPCLIARAKKDGKDCVIVMMNA 248 >gi|51598858|ref|YP_073046.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi] gi|51573429|gb|AAU07454.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi] Length = 401 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 129/275 (46%), Gaps = 35/275 (12%) Query: 21 SIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 ++AE N+L + L+D +T ++ P+ + PASLTK++T Y +++ L Sbjct: 29 NLAEINELSKHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKL 88 Query: 77 TTPITISKNASEY-PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + + IS +AS Y P NS+ +KG + + LK L V S ND ++AIAE + Sbjct: 89 KSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLN 148 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMH---Y 187 FV MN NLGL HF+ G TA DMA S+ K F +H Y Sbjct: 149 SFVNLMNINVLNLGLFNMHFVEPSGYSNENK-ITALDMAFFVKSYIEKFKFMLNIHSLKY 207 Query: 188 F------------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 F K L +K K N N + + +DG+KTG+ SG N+VA+A + Sbjct: 208 FVYPKSKNLGTTLSSKFLNLKQK---NANLLISDYPYSDGLKTGYIKESGLNLVATAQKD 264 Query: 236 DQSLIAVILG------ALDRNTRNKVSASLLSMGF 264 + LIAV+LG L R ++ L GF Sbjct: 265 GRRLIAVVLGVKKGINGLGEKMRALIAKDLFEYGF 299 >gi|319891642|ref|YP_004148517.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein PBP4 [Staphylococcus pseudintermedius HKU10-03] gi|317161338|gb|ADV04881.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein PBP4 [Staphylococcus pseudintermedius HKU10-03] Length = 425 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 29/266 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG ++ E + W PAS+TKLMT Y+ +KEKK L + I+ S P Sbjct: 53 SQTGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPEL 112 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ +A + + FV MN+T+K+LG++ TH Sbjct: 113 SNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTH 172 Query: 152 FMNAHGV------------VQHGHYTT--ARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 ++N G QH +T ARD AIL+ + D P+ +++ + G Sbjct: 173 YVNPTGAENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHG 232 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N + + G DG+KTG + + +N + +G + +I+GA D Sbjct: 233 VTYYTFNDLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKHLG 292 Query: 249 -RNTRNKVSASLLSMGFYNKTDRKKI 273 RN +SAS ++ F ++ D KKI Sbjct: 293 GEKQRNMMSASAINYTF-SQYDYKKI 317 >gi|197117367|ref|YP_002137794.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Geobacter bemidjiensis Bem] gi|197086727|gb|ACH37998.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase, S11 family [Geobacter bemidjiensis Bem] Length = 287 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 11/226 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+ N GH E PASLTK+MTA +V K L + +S+ A+ Sbjct: 35 PSAYLIQVN-GHTYKERNAHIRRPPASLTKIMTALIVMERCK-----LDEVVVVSRGAAR 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G +T+ + L ++ SAND A+A+ C ++ FV MN ++ L L Sbjct: 89 ETGSRIGLRRGERLTVRDLLAATLMASANDACRALADHACGNQRDFVVQMNARARALQLQ 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHY--FQIKGLEIKGKKY-PNT 203 T F NA G G YTTA D+A+L+ + K F + + +I+ L K Y N Sbjct: 149 NTRFTNACGHDNAGLYTTAHDLALLTEKAMQKPYFAELVARKEMRIRTLNSKRSYYLRNK 208 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 N +G + GA G+KTG T +G +VA A + ++ ++ VI+ A +R Sbjct: 209 NRLIGRYPGAIGVKTGTTPNAGQCLVAIAEREERKVLLVIMHARNR 254 >gi|323465190|gb|ADX77343.1| penicillin binding protein 4 [Staphylococcus pseudintermedius ED99] Length = 425 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 29/266 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG ++ E + W PAS+TKLMT Y+ +KEKK L + I+ S P Sbjct: 53 SQTGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPEL 112 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ +A + + FV MN+T+K+LG++ TH Sbjct: 113 SNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTH 172 Query: 152 FMNAHGV------------VQHGHYTT--ARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 ++N G QH +T ARD AIL+ + D P+ +++ + G Sbjct: 173 YVNPTGAENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHG 232 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N + + G DG+KTG + + +N + +G + +I+GA D Sbjct: 233 VTYYTFNDLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKNLG 292 Query: 249 -RNTRNKVSASLLSMGFYNKTDRKKI 273 RN +SAS ++ F ++ D KKI Sbjct: 293 GEKQRNMMSASAINYTF-SQYDYKKI 317 >gi|149181680|ref|ZP_01860173.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus sp. SG-1] gi|148850658|gb|EDL64815.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus sp. SG-1] Length = 384 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 22/228 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ E P AS+TK+MTA + + L + +S NA + S Sbjct: 40 VIDQDTGRVLYEKDAHTPSRIASITKIMTAILAI-----ESGKLEETVKVSNNAVKAEGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G + L++ + L+++S ND AVAIAE + + F+ MN ++ +G+ THF Sbjct: 95 SIYLKPGEKIKLEDLVYGLMLRSGNDSAVAIAEHVGGSLDGFIFLMNKKAEEIGMRNTHF 154 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWA---- 206 N HG+ H HY+TA DMA+L T + Q Y ++ G ++ P +W Sbjct: 155 ANPHGLDDHEDHYSTAFDMALL-----TKYAMQNEKYKEVAGTKVHTSPDPEHDWDRKWK 209 Query: 207 ------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A +G+Q+LIAV L D Sbjct: 210 NKNRLLTELYKYCTGGKTGYTKRAKRTLVTTATKGEQNLIAVTLNGPD 257 >gi|257066773|ref|YP_003153029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM 20548] gi|256798653|gb|ACV29308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM 20548] Length = 403 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 Y + + G + E D ASLTKLMT +V + K L T + K A E Sbjct: 41 YLIGNQENGDIYYEKNADEALPMASLTKLMTFLLVRDAMDAGKIDLNTSVKADKRAEELT 100 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S K+ + +++ L+ LI S ND A +A+++ +E KF Q MN +K+LGL Sbjct: 101 SWEYSALGLKENESYSVEELLQGLIAVSGNDCAHLLAKTVAGSEDKFAQMMNQKAKDLGL 160 Query: 148 SATHFMNAHGV-VQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPN 202 ++ + NA G+ G + ++ARD+ LS I +P + Y + + I GK + + Sbjct: 161 TSQKYYNASGIGTDDGKENKSSARDLFKLSSEIVKKYPDILRYSTMDEVNIPGKGIRKNS 220 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASA----IQGDQSL--IAVILGALDRNTRNKVS 256 T G G DG+KTG T +G+ +V + + G+ I V++GA ++TR+ V Sbjct: 221 TIPLRGEIKGVDGLKTGTTDQAGYCLVTTTDMKELDGNDEFRTIGVVMGADQKDTRDSVM 280 Query: 257 ASLL 260 + L+ Sbjct: 281 SDLI 284 >gi|229073057|ref|ZP_04206247.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228710062|gb|EEL62046.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] Length = 416 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|253701878|ref|YP_003023067.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp. M21] gi|251776728|gb|ACT19309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp. M21] Length = 276 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 11/226 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+ N GH+ E PASLTK+MTA +V K L + +S+ A+ Sbjct: 24 PSAYLIQVN-GHIYKERNAHIRRPPASLTKIMTALIVMERCK-----LDEVVVVSRGAAR 77 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G +T+ + L ++ SAND A+A+ C ++ FV MN ++ L L Sbjct: 78 ETGSRIGLRRGEKLTVRDLLAATLMASANDACRALADHACGNQRDFVVQMNARARALQLP 137 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHY--FQIKGLEIKGKKY-PNT 203 T F NA G G YTTA D+A+L+ + K F + + +I+ L K Y N Sbjct: 138 NTRFTNACGHDSAGLYTTAHDLALLTEKAMQKPLFAELVARKEMRIRTLNSKRSYYLRNK 197 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 N +G + GA G+KTG T +G +VA A + ++ ++ VI+ A +R Sbjct: 198 NRLIGRYPGAIGVKTGTTPNAGQCLVAIAEREERKVLLVIMHARNR 243 >gi|167813984|ref|ZP_02445664.1| penicillin-binding protein 6 [Burkholderia pseudomallei 91] Length = 306 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 7/161 (4%) Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +I++S ND A+A+AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+ Sbjct: 34 MIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDL 93 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A LS + D+P Y + F +K K PN N + DG+KTG T A+G+ ++A Sbjct: 94 AKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIA 153 Query: 231 S-------AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 S A + L+ V++G + R + S +L+ G+ Sbjct: 154 SAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLNYGY 194 >gi|226309602|ref|YP_002769496.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] gi|226092550|dbj|BAH40992.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] Length = 438 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 27/284 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L++ +TG V+ PD PAS++K+MT Y+V +K+KK + +S+ A ++ Sbjct: 51 LVEASTGKVLYSKDPDVALPPASMSKMMTEYLVHDAIKQKKMKWDDVVPVSEYAFYIAKI 110 Query: 90 PPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ + G + T+ + + + SAND V +AE + +E FV+ MN + LG+ Sbjct: 111 SDSSGVYLNLGESFTVKQLYEAMAIVSANDATVLLAEHIAGSEAAFVELMNKKAAELGMK 170 Query: 149 ATHFMNAHGVV--QHGHYT----------TARDMAILSWRIKTDFPQYMH-----YFQIK 191 T F+ + G+ + G Y+ +ARD AIL+ + DFP + F + Sbjct: 171 NTSFVTSTGLPADELGPYSVQTDQKENLMSARDSAILARALIHDFPDALETSKKPIFTFR 230 Query: 192 GLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N NW + + + G DG+KTG T A+GF +A++ + LI+V++ A Sbjct: 231 TGTPNEWTKKNYNWMLPSLISYYPGVDGLKTGHTDAAGFCFTGTAVRDNMRLISVVMKAS 290 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEV 289 + R + L GF N K++ N +K F + N V Sbjct: 291 TESKRFAETRKLFDYGFGNFKLTKQMDKNVPVKGFETAPVKNGV 334 >gi|304316607|ref|YP_003851752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778109|gb|ADL68668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 418 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 19/280 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + F I+A +L + P + E+ P L+D TG V+ + PAS TK Sbjct: 3 KTFTFIMAFIILISFIPHVYAIESPPQIVGPTAVLMDFTTGQVLYDKNMHQKMYPASTTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++TA + +K L +T++ + ++ G +TL+ L ++++SAND Sbjct: 63 ILTAIIAI-----EKGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESAND 117 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A+A+A+ + + + F MN +K +G + +HF+N +G+ + HY+T DMA+++ Sbjct: 118 AAIAVADHIGGSVQAFADMMNKKAKEIGANDSHFVNPNGLPDNNHYSTPYDMALIARYAM 177 Query: 179 TD--FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--------GADGMKTGFTCASGFNI 228 + F + + + L P W + GADG+KTG+T A+ Sbjct: 178 GNATFRKIVSTIHYQILPTNKFDKPRDLWISNRLIKPSSFHYDGADGVKTGYTIAANQVF 237 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 V SA + LI+VI+G N + + +LL GF N T Sbjct: 238 VGSATRNGHRLISVIMGDEGTNIWSD-TINLLDYGFNNYT 276 >gi|203284509|ref|YP_002222249.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly] gi|203288043|ref|YP_002223058.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1] gi|201083952|gb|ACH93543.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly] gi|201085263|gb|ACH94837.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1] Length = 333 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 140/300 (46%), Gaps = 42/300 (14%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--ETNKLPY----YTLLDTNTGHVIAENYPDHPWNPA 54 M+ +I++M +L N + SI + K+ LLD +T V+ P+ + PA Sbjct: 27 MKIIFIIMSMFLLFNAYKLFSITLLQIEKVVLDAKSVVLLDCDTKCVLYSKNPNLVFPPA 86 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTF---KKGSTMTLDNALKL 110 SLTKL+T Y K++ L + IS +AS Y P +S+ ++G +T + LK Sbjct: 87 SLTKLVTIYTALVEAKKQNIDLNAIVPISSSASYYNLPLDSSLMFLEEGHKVTFEELLKG 146 Query: 111 LIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+V S ND A+AIAE + K FV MN+ L L T F++ G ++ TA + Sbjct: 147 LVVSSGNDAAIAIAEFIVGKDLNNFVNLMNDNVFKLKLINTSFVDTSGYSKNNK-ITALE 205 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------------------NTNWAVGTF 210 MA+ + +F F +K +K YP N N + + Sbjct: 206 MALFAKTYIDEFE-----FMLKIHSLKDFIYPKPENLGSTSSSKMLNLKQDNKNILILNY 260 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGF 264 ADG+KTG+ SG N+VA+A + D LIAVILG + R+ ++ L GF Sbjct: 261 PYADGLKTGYIKTSGLNLVATAKKDDIRLIAVILGVSKGVDNIGEKKRSLIAQKLFEYGF 320 >gi|229150695|ref|ZP_04278909.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228632782|gb|EEK89397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] Length = 416 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|296503035|ref|YP_003664735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|296324087|gb|ADH07015.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 434 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 43 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 103 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 162 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 163 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 222 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 223 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 282 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 283 AKSHTARFDETKKLYDYGFAN 303 >gi|20807777|ref|NP_622948.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20516333|gb|AAM24552.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 380 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 13/220 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ E AS TK+MT + ++ L +T+S+ A+ S Sbjct: 35 VMDQNTGRVLYEKNAHLKLPMASTTKIMTLLIAL-----ERGNLNDIVTVSQKAASVGGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L +++ S ND A AIAE + T + FV+ MN +K +G THF Sbjct: 90 SIWLSPGEKIDMESLLYGIMLNSGNDAATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHF 149 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYP----NTN 204 + G + HYTTA D+A+++ ++P++ K + +GK++ N N Sbjct: 150 VTPSGLDIGIDDHYTTAYDLALITRYAFLNYPKFAEIVSTKEKTIPCEGKEWDRYLRNKN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 210 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 249 >gi|30020579|ref|NP_832210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29896130|gb|AAP09411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 437 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 46 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 166 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 226 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 286 AKSHTARFDETKKLYDYGFAN 306 >gi|229079541|ref|ZP_04212079.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228703766|gb|EEL56214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] Length = 416 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEENSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|258645732|ref|ZP_05733201.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470] gi|260403101|gb|EEW96648.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470] Length = 330 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 17/241 (7%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--KAMLTTPITISKNASEY 89 L+D NTG +IA+ + PAS TK++T + +EK + TP+ I ++ + Sbjct: 58 VLMDGNTGDIIAQKEGELKIYPASTTKILTCIIALEEGREKLEADAVITPLAIGQDGT-- 115 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 N + ++L L +++ S ND AV++AE++ + F+Q MN + ++G + Sbjct: 116 ---NIGLRSDMPISLHELLYGMMLVSGNDAAVSVAETVGGSYGGFIQMMNEKAVSIGATR 172 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNT---- 203 +HF N +G+ HYTTA DMA +S R P++ + K + + Y N Sbjct: 173 SHFANPNGLTDKNHYTTAIDMAKIS-RYAMGNPEFRKIVREKVYPMRYRSGVYRNVENRN 231 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + GA+G+KTG T A+G +VASA + Q LIA + D R K + G Sbjct: 232 EFLSNGYRGANGIKTGMTMAAGECLVASAERDGQLLIAAV---YDDENRWKDVEAWFDYG 288 Query: 264 F 264 F Sbjct: 289 F 289 >gi|229196731|ref|ZP_04323474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228586806|gb|EEK44881.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] Length = 338 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D ++G V+ + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LIDAHSGEVVYTKNEETPIQSATLSKLMTEYITLEQLNEGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E KF Q MN +K+L LS + Sbjct: 100 PIQVTSKDKTTV--RDLLHALLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVILDAENENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|219667694|ref|YP_002458129.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219537954|gb|ACL19693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 423 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 24/283 (8%) Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWN 52 MR V+ A+AML N F +K+P L+D TG + PDHP+ Sbjct: 1 MRLIAVLFTALAMLLN-FAVPVFGSPDKVPVPELSSEGAILIDITTGQTLFAKNPDHPFE 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALK 109 PAS TK+M+A + +K L +T + + + T + G +TL+N L Sbjct: 60 PASTTKIMSALIAL-----EKGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLY 114 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAND AVAIAE + + F MN +K +G T F N G+ + GH TTARD Sbjct: 115 ALLLNSANDAAVAIAEHIGGDVQGFTDLMNAKAKEIGALNTSFKNPSGLSEDGHLTTARD 174 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGAD----GMKTGFTCA 223 +A+++ R P Y + K I + P + + F+ + GMKTG+T + Sbjct: 175 LAMIA-RFAYQNPVLRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTTS 233 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +G VA+A + ++L+ V+L + + + +L GF N Sbjct: 234 AGNTYVATAERDGRALLGVVLKSPSKTSIYTDMRNLFEYGFTN 276 >gi|291557282|emb|CBL34399.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 409 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 + +TG V+ E+ AS+TKLM + +++ + T IT + A+ S Sbjct: 67 EVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVI 126 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G M+ + ++ +++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N Sbjct: 127 WLNVGEEMSAYDMIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDN 186 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTF 210 G HYT+A D AILS + +++ Y +F + ++ G++ NTN + + Sbjct: 187 CVGFDSDTHYTSAYDTAILSAAV-SEYDCYNEFFATRLDYVREGERQTQLLNTNKLMQRY 245 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G KTG T +G + A +G+ L AV LG + R LL+ GF Sbjct: 246 DGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGF 299 >gi|254478669|ref|ZP_05092040.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [Carboxydibrachium pacificum DSM 12653] gi|214035356|gb|EEB76059.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [Carboxydibrachium pacificum DSM 12653] Length = 333 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 13/220 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NTG V+ E AS TK+MT + ++ L +T+S+ A+ S Sbjct: 35 VMDQNTGRVLYEKNAHLKLPMASTTKIMTLLIAL-----ERGNLNDIVTVSQKAASVGGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L +++ S ND A AIAE + T + FV+ MN +K +G THF Sbjct: 90 SIWLSPGEKIDMESLLYGIMLNSGNDAATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHF 149 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ ++P++ K I +GK++ N N Sbjct: 150 VTPSGLDISIDDHYTTAYDLALITRYAFLNYPKFAEIVSTKEKTIPWEGKEWDRYLRNKN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 210 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 249 >gi|206971703|ref|ZP_03232653.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134] gi|206733688|gb|EDZ50860.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134] Length = 437 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 46 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 166 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 226 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 286 AKSHTARFDETKKLYDYGFAN 306 >gi|28211195|ref|NP_782139.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28203635|gb|AAO36076.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 374 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 10/223 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LD N+ V+A + AS TK++TA V + L + IS AS Sbjct: 44 YIALDANSKVVLAGRNSEVIMPMASTTKILTALVTLKY-----GDLDKMVEISPKASSIR 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +KKG ++L L L+++S ND A+AIAE + +E++FV+ MN + +LGL + Sbjct: 99 GSVAGYKKGEEISLKELLFGLMLRSGNDAAIAIAEGVAGSEEEFVRLMNEYAASLGLIDS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWA 206 HF + HG+ HY+T D+AIL+ K P + K + + Y N N Sbjct: 159 HFCSPHGLDSAEHYSTVYDLAILTAESKK-HPLFHEIVSTKDITKDKYSFSRDYHNINKI 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + A G+KTG+T +G +V+S + +I V+L R Sbjct: 218 LWQLPNATGVKTGYTGGAGKCLVSSVDISGREVIIVVLDCPGR 260 >gi|326391076|ref|ZP_08212623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325992861|gb|EGD51306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 379 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E AS TK+MT V +K L +T+SK A+ S Sbjct: 35 VMDQETGRVLYEKNSHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + FV+ MN +K +G THF Sbjct: 90 SIWLSPGEKIDMESLLFGLMLNSGNDAATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHF 149 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +GK++ N N Sbjct: 150 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKN 208 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 209 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 248 >gi|229190458|ref|ZP_04317457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228593007|gb|EEK50827.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] Length = 416 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|229178819|ref|ZP_04306179.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228604584|gb|EEK62045.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] Length = 416 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|312622483|ref|YP_004024096.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] gi|312202950|gb|ADQ46277.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] Length = 374 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 125/258 (48%), Gaps = 17/258 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASL 56 R F++I A+ + + E LP + ++ TG ++ E D AS Sbjct: 4 RVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMAST 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V K I I A P S+ +KG + + + L L++ S Sbjct: 64 TKIMTAILVLENCDVNKE-----IEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 119 NDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAY 178 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + P + + K +E+ P N N + + GADG+KTGFT +G +V Sbjct: 179 AMRN-PIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVT 237 Query: 231 SAIQGDQSLIAVILGALD 248 S + D +I V+L A D Sbjct: 238 SVCRDDFRVICVVLNAPD 255 >gi|307266908|ref|ZP_07548427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918065|gb|EFN48320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 421 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 24/258 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ + PAS TK++TA + +K L +T S N ++ Sbjct: 34 PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIAI-----EKGNLNDIVTASDNVTK 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ G +TL+ L L+++SAND A+AIAE + + + F + MN +K +G Sbjct: 89 IDGNSIFLSPGEQLTLEQLLYALLLESANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAY 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYF--------QIKGLE 194 +HF+N +G+ HY+T DMA+++ R P++ +HY +++ L Sbjct: 149 DSHFVNPNGLPDENHYSTPYDMALIA-RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLW 207 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + +++ + GADG+KTG+T A+G +VASA + LI+VI+G N Sbjct: 208 LSNRLIKPSSFH---YEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMGDQGTNIWTD 264 Query: 255 VSASLLSMGFYNKTDRKK 272 + LL GF N T KK Sbjct: 265 -TIKLLDYGFQNFTLVKK 281 >gi|229127885|ref|ZP_04256871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228655650|gb|EEL11502.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] Length = 416 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ ++ + +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|222529271|ref|YP_002573153.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] gi|222456118|gb|ACM60380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] Length = 372 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 125/258 (48%), Gaps = 17/258 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASL 56 R F++I A+ + + E LP + ++ TG ++ E D AS Sbjct: 4 RVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMAST 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V K I I A P S+ +KG + + + L L++ S Sbjct: 64 TKIMTAILVLENCDVNKE-----IEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 119 NDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAY 178 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + P + + K +E+ P N N + + GADG+KTGFT +G +V Sbjct: 179 AMRN-PIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVT 237 Query: 231 SAIQGDQSLIAVILGALD 248 S + D +I V+L A D Sbjct: 238 SVCRDDFRVICVVLNAPD 255 >gi|228952739|ref|ZP_04114812.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806910|gb|EEM53456.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 416 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|206973720|ref|ZP_03234638.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217960011|ref|YP_002338567.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|222096095|ref|YP_002530152.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|229139202|ref|ZP_04267777.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|206747876|gb|EDZ59265.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217064880|gb|ACJ79130.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|221240153|gb|ACM12863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] gi|228644261|gb|EEL00518.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 338 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D ++G V+ + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LIDAHSGEVVYTKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E KF Q MN +K+L LS + Sbjct: 100 PIQVTSKDKTTV--RDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|228921188|ref|ZP_04084518.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838504|gb|EEM83815.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 416 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 25 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 85 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMK 144 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 145 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 204 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 205 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 265 AKSHTARFDETKKLYDYGFAN 285 >gi|326389891|ref|ZP_08211455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325994159|gb|EGD52587.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 421 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 24/258 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ + PAS TK++TA + +K L +T S N ++ Sbjct: 34 PTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIAI-----EKGNLNDIVTASDNVTK 88 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ G +TL+ L L+++SAND A+AIAE + + + F + MN +K +G Sbjct: 89 IDGNSIFLSPGEQLTLEQLLYALLLESANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAY 148 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYF--------QIKGLE 194 +HF+N +G+ HY+T DMA+++ R P++ +HY +++ L Sbjct: 149 DSHFVNPNGLPDENHYSTPYDMALIA-RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLW 207 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + +++ + GADG+KTG+T A+G +VASA + LI+VI+G N Sbjct: 208 LSNRLIKPSSFH---YEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMGDQGTNIWTD 264 Query: 255 VSASLLSMGFYNKTDRKK 272 + LL GF N T KK Sbjct: 265 -TIKLLDYGFQNFTLVKK 281 >gi|296132902|ref|YP_003640149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296031480|gb|ADG82248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 372 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D NTG V+ PAS TK++T + + ++ +P A+ Sbjct: 34 VLMDANTGQVLYAKNAHKRRPPASTTKILTGILALDMGNPAETVVVSP-----RAAAVGE 88 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ G +TLD ++ ++KS ND AIAE + + + F Q MN +K LG ++ Sbjct: 89 SSIYLSAGEKLTLDELIQGALMKSGNDACAAIAEHIGGSIEMFSQLMNLKAKMLGAWNSN 148 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKY----PNTNW 205 F+N HG+ HY+TA D+A+++ R ++ K EI G+ + NTN Sbjct: 149 FINPHGLPAKNHYSTAYDLALIA-RYAMQNRRFAEIVAQKEKEIDWYGQSWNRHLKNTNK 207 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + ++ ADG+KTG T A+G +V+SA + + LIAV+L + DR S L GF Sbjct: 208 LLWRYIWADGIKTGTTKAAGQCLVSSASKDCRKLIAVVLKSGDRYGD---SIQLFEYGFN 264 Query: 266 N 266 N Sbjct: 265 N 265 >gi|319407217|emb|CBI80856.1| Penicillin-binding protein [Bartonella sp. 1-1C] Length = 390 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 27/246 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 +LD NT ++ E D + PASL KLMTA VVF LK+ T +S+NA Sbjct: 35 ILDDNTDTILFEKQSDVVFFPASLAKLMTAEVVFYQLKKGLLNKTQKFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L L++ + ND A+ +AE + + F + MN +K LGL Sbjct: 95 PSGATTMFAKEKTEISVFDLLHGLVIVNGNDAAITLAEGIAGNDANFAKLMNKRAKTLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF+NA G+ + G +TT RD+ L I ++P Y + + PN W Sbjct: 155 LNSHFVNATGLPEKGQFTTLRDIITLVRHIAREYPDYYALY----------REPNFTWNK 204 Query: 208 GTF------------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 T + +G+ G++ GF+ V SA Q + I G ++ R K Sbjct: 205 ITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAYNNQQRIFLAINGLQNKQERTKE 264 Query: 256 SASLLS 261 +L Sbjct: 265 VKRILE 270 >gi|258515621|ref|YP_003191843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257779326|gb|ACV63220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 18/242 (7%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 L+D+ TG V PD PASLTK+MTA V + + ISK A+ Sbjct: 37 VLMDSATGQVFFAKEPDKRRFPASLTKIMTALVAL-----ENGDPNDVVKISKKAASVSM 91 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +TL+N LK +V SAND VAIAE + + F+ MN + + G T Sbjct: 92 GSVIDLRAGEEITLENLLKAALVCSANDSTVAIAEHVGGNVENFLVMMNARALSAGAVNT 151 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKK-----YPNT 203 ++ N +G HYTTA D+A+++ R Q+ IK L +G K NT Sbjct: 152 NYANTNGYTLPNHYTTAYDLALIA-RQALRNKQFNRLISIKETTLNWEGNKNRTLEIRNT 210 Query: 204 NWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + F G DG+KTG T +G ++ASA + + LIAV+L + N R +A++L+ Sbjct: 211 NRLLREGFPGIDGVKTGSTPRAGDCLIASASRNGRRLIAVVLHS---NNRYTDAANILNY 267 Query: 263 GF 264 GF Sbjct: 268 GF 269 >gi|89896454|ref|YP_519941.1| hypothetical protein DSY3708 [Desulfitobacterium hafniense Y51] gi|89335902|dbj|BAE85497.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 428 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 23/278 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ A+AML N F +K+P L+D TG + PDHP+ PAS T Sbjct: 11 VLFTALAMLLN-FAVPVFGSPDKVPVPEISSEGAILIDITTGQTLFAKNPDHPYEPASTT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVK 114 K+M+A + +K L +T + + + T + G +TL+N L L++ Sbjct: 70 KIMSALIAL-----EKGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYALLLN 124 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND AVAIAE + + F MN +K +G T F N G+ GH TTARD+A+++ Sbjct: 125 SANDAAVAIAEHIGGDIQGFTDLMNAKAKEIGALNTSFKNPSGLSADGHLTTARDLAMIA 184 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGAD----GMKTGFTCASGFNI 228 R P + Y + K I + P + + F+ + GMKTG+T ++G Sbjct: 185 -RFAYQNPVFRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTSSAGNTY 243 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 VA+A + ++L+ V+L + + + L GF N Sbjct: 244 VATAERDGRALLGVVLKSPSKTSIYTDMRKLFEYGFTN 281 >gi|219669686|ref|YP_002460121.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219539946|gb|ACL21685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 379 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 124/250 (49%), Gaps = 18/250 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ + PAS TK++TA + K + + +S+ A+ S Sbjct: 50 LMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKPDEL-----VVVSEKAAAVGES 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + L + +VKS ND VAIAE + TE+ FV+ MN + LG THF Sbjct: 105 TIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWA 206 N +G+ H +TA D+A+++ R P + ++K EI + NTN Sbjct: 165 ENTNGLPSKNHVSTAYDLALMA-RYGLQIPAFTSITRLKETEIHFIEPDFFMNLRNTNKL 223 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + DG+KTG T A+G +VA+A + + LIAV+L A DR + LL GF N Sbjct: 224 LWNYPYTDGVKTGTTTAAGKCLVAAATKDGRQLIAVVLHAPDRFGD---AQKLLEWGF-N 279 Query: 267 KTDRKKINYI 276 +T+ +NY+ Sbjct: 280 ETE--TLNYV 287 >gi|291547442|emb|CBL20550.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 429 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 123/259 (47%), Gaps = 30/259 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NT V+ D PAS+TK++T + L K T IT+S+ AS + Sbjct: 90 LMDVNTEAVLYSKNADTQLYPASITKILTTLLACENLNAK-----TNITVSEKASTSVTA 144 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + G T D AL ++++SAN+++VAIAE + + KKF + MN +K G Sbjct: 145 GDSSIYAAPGEKFTRDQALMAVMLQSANEMSVAIAEEVSGSVKKFAELMNWRAKLFGCKN 204 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N +G+ HYTTA DMA ++ + P + Y + EI P +A Sbjct: 205 THFNNPNGLPDENHYTTASDMAKIAKSAWLN-PLFRRYCTKRYYEIP----PTNKFAEAR 259 Query: 210 FL---------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 L G G KTG+T ASG +V +G+ +L+AVIL + Sbjct: 260 QLLNHHKMMKNGEYYYEGVRGGKTGYTDASGNTLVTYCKRGNITLVAVILNSTSAANAYS 319 Query: 255 VSASLLSMGFYN--KTDRK 271 +ASL + GF N K D K Sbjct: 320 DTASLFNYGFENFEKVDMK 338 >gi|259046641|ref|ZP_05737042.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] gi|259036806|gb|EEW38061.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] Length = 500 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 27/240 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 L+D TG ++ ++ D PW+PAS TKLMTAY+V+ +K K L T IT ++ Sbjct: 95 LVDAETGQILYGDHIDKPWDPASTTKLMTAYLVYEAIKAGKITLDTKITATELDRAISTI 154 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN+ + G + + L L++ S+N V ++ ++ ++ +++++ MN+ +K LG++ Sbjct: 155 DDISNNQIRAGIEYPVRDLLYLMMYPSSNVATVMLSHAISQSNEEYIKMMNDKAKELGMT 214 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQ----- 189 + F N G V G Y TTARD+A LS+ ++P+++ + Sbjct: 215 NSKFYNPSGAVVSAFRGLYTVEGVPDEYNQTTARDLATLSYYFLKNYPEFLEITREPAVT 274 Query: 190 -IKGLEIKGKKYPNTNWAVGT---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++G ++ Y A G + DG KTG + + N V +A + + +I V++G Sbjct: 275 TMEGTVVEETFYTLNQLASGMNQGYFHVDGFKTGSSPNAALNHVITAKEKGRRVIEVLMG 334 >gi|319898924|ref|YP_004159017.1| Penicillin-binding protein [Bartonella clarridgeiae 73] gi|319402888|emb|CBI76439.1| Penicillin-binding protein [Bartonella clarridgeiae 73] Length = 394 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 8/248 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 + D NT ++ + D + PASLTKLMTA +VF LK+ +S+NA Sbjct: 35 IFDDNTSTILFKKQSDVAFFPASLTKLMTAEIVFHQLKKGFLNKEQKFKVSENAWRKGGA 94 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T K+ + +++ + L+ L++ + ND A+ +AE + E F + MN +K LGL Sbjct: 95 PSGTTTMFAKEKTEISVFDLLRGLVIVNGNDAAITLAEGIAGNEANFAKLMNKRAKTLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF+NA G + G + T DM L+ I ++P Y + N N + Sbjct: 155 LNSHFVNATGFPEEGQFITLNDMITLARHIAHEYPDYYALYSEPDFTWNKITQHNKNPLI 214 Query: 208 G--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 T + +G+ G++ +GF+ V SA + Q L + G + R K +L Sbjct: 215 SQVTDVKIEGLGFGYSEETGFSTVISAYKNQQRLFLAVSGLQNNKERTKEIKRILQWSLT 274 Query: 266 NKTDRKKI 273 N D KKI Sbjct: 275 N-FDLKKI 281 >gi|315221821|ref|ZP_07863733.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus F0211] gi|315189054|gb|EFU22757.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus F0211] Length = 444 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 35/266 (13%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P + N+ ++D NTG+++ ++ D +PAS++KLMT Y+VF +++ Sbjct: 14 MAQKMYPNEKVNPINRPKSSLIVDANTGNILWQDNIDEVRDPASMSKLMTLYLVFEAIQQ 73 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T I + A Y SN+ G T+ + + V S+N V +A L Sbjct: 74 GKLSENTVIKATPRDEAIAKIYEISNNKIVAGVDYTVSELITMTAVPSSNATTVMLANYL 133 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN +K LG++ T + NA G G Y TTARD+A Sbjct: 134 SNNDPDTFLDMMNAKAKELGMTNTKWFNASGAAAVSFKGLYTPQRYDNNAANQTTARDLA 193 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI-KGKKY-----------PNTNWAVGTFLGADGMKTG 219 IL + ++P ++Y + + KG Y P +A+ G DG+KTG Sbjct: 194 ILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSLPGARYAIK---GVDGLKTG 250 Query: 220 FTCASGFNIVASAIQGDQSLIAVILG 245 + FN +A+ +G+Q LI+VI+G Sbjct: 251 SSPQGAFNYIATIKRGEQRLISVIMG 276 >gi|229100275|ref|ZP_04231166.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228683170|gb|EEL37157.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] Length = 453 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 62 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 122 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMK 181 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFPQ ++ +I K Sbjct: 182 DYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 241 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 242 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 301 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 302 AKSHTARFDETKKLYDYGFAN 322 >gi|153826719|ref|ZP_01979386.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2] gi|149739506|gb|EDM53740.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2] Length = 194 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 12/191 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPA 54 +FLV +MA ++ + P L + +P Y L+D +TG V+ E+ NPA Sbjct: 5 KFLVRFSMACMAFV-PTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTF-KKGSTMTLDNALKLL 111 SLTKLMT+YV +K + IS NA ++P S+ F + G+ + L + + L Sbjct: 64 SLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGL 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A Sbjct: 124 IVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIA 183 Query: 172 ILSWRIKTDFP 182 +L I D P Sbjct: 184 LLGRAIIRDLP 194 >gi|229119057|ref|ZP_04248397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228664386|gb|EEL19887.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] Length = 453 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 62 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVAKGKIKWDQKVKISEYAHKISQD 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 122 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMK 181 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFPQ ++ +I K Sbjct: 182 DYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 241 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 242 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 301 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 302 AKSHTARFDETKKLYDYGFAN 322 >gi|295091424|emb|CBK77531.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 474 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 24/248 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D V+ E D PAS+TKLMTA +V + L+ +T S++A S Sbjct: 97 LYDATHDRVLYEKNADAQHYPASITKLMTALLVL-----EHCSLSDTVTFSQSAVTNLES 151 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + K G T++ L L++KSAN+IA +AE + + F MN + +LG + Sbjct: 152 GAVTLGVKAGDQFTIEQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLGCTG 211 Query: 150 THFMNAHGVVQHGHYTTARDMAILS---------WRIKT----DFPQYMHYFQIKGLEIK 196 THF+N +G+ HYTTARDMA+++ RI + DFP ++ L + Sbjct: 212 THFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKLTM- 270 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G K N N + G G KTG+T +G +V + LIAVIL + R T + Sbjct: 271 GHKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVILKS--RQTHYADT 328 Query: 257 ASLLSMGF 264 +LL GF Sbjct: 329 KALLDYGF 336 >gi|323490220|ref|ZP_08095437.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis MPA1U2] gi|323396116|gb|EGA88945.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis MPA1U2] Length = 452 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 157/352 (44%), Gaps = 44/352 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + ++A+ M++ I P AE T L+D +G ++ E + P AS+TK+M Sbjct: 16 LIALLAVFMITGITPQQVNAEESLTIMAEAAILVDAESGKILYEKNAEKPLGVASMTKMM 75 Query: 61 TAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y++F ++E K ++ + + + SN F++ + T+ + + + SA Sbjct: 76 TEYLLFEAIEEGKVAWDQEYQVTDYTYRISQDMRLSNVPFREDGSYTIKEMYEAMAIFSA 135 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------HGHYTT-- 166 N + IAE++ TE +FV+ MN +K +GL T F+N+ G+ G T Sbjct: 136 NAATIGIAETIAGTESEFVELMNEKAKEMGLEETTFVNSTGLSNSSLMGMHPEGTKETDE 195 Query: 167 ----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NW------AVGTFLGA 213 AR +A L+ + D+P+ + +I + T NW + + G Sbjct: 196 NIMPARAVAKLTKILLDDYPEVLETTKIPLKMFREGTSDETRMENWNSMLPGLIYEYEGV 255 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGF--Y 265 DG+KTG T +G++ +A + D IAV++GA+D R + L GF + Sbjct: 256 DGLKTGSTDFAGYSFAGTAKRDDTRFIAVVMGAVDSEGAGSYKARFDATRVLFDYGFDEF 315 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 K + Y K+ Q L E + E+V KE + T M DKE Sbjct: 316 TKEELIPAGYQFKE--QDTLEVE-KGVEEKVAIAVKEPV---TMMVRTADKE 361 >gi|228908234|ref|ZP_04072080.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228851432|gb|EEM96240.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 442 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 171 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 291 AKSHTARFDETKKLYDYGFAN 311 >gi|229083326|ref|ZP_04215686.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] gi|228699973|gb|EEL52598.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] Length = 449 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 28/268 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ + D AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 56 LVEADSGKILYQKNADELLAIASMTKMMSEYLVHKAVDQGKLKWDQKVKVSEYAYKVSQD 115 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ +K GL Sbjct: 116 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLK 175 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD+AIL+ R+ DFP + +I K + Sbjct: 176 NYKFVNSTGLTNTDLKGLHPEGTTPDEENKMSARDVAILAQRLMQDFPNVLDTAKIPKKV 235 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K KYP N NW V + G DG+KTG T +G+ +A + LI+V++ Sbjct: 236 FQKDGKYPIQMDNWNWMLKGLVKQYEGVDGLKTGHTPEAGYCFTGTAEKNGMRLISVVIN 295 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +R + + GF N D KK+ Sbjct: 296 TSSNTSRFDETKKIFDYGFAN-FDVKKV 322 >gi|298249991|ref|ZP_06973795.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297547995|gb|EFH81862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 321 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 26/257 (10%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 +K+ Y L+D +TG+V+ AS TK+MTA L KA L +TI ++ Sbjct: 61 SKIAY--LVDDDTGNVLVNVKGRERVPMASTTKIMTA-----ILTIDKADLNQVVTIKQD 113 Query: 86 ASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 A + + SN+ G + L + L L++ S +D A AIA+S+ ++ +FV MN Sbjct: 114 AVDEAKVHNGSNAQLVIGDQIRLKDLLYALMLPSGDDAATAIADSVAGSQTQFVTMMNAY 173 Query: 142 SKNLGLSATHFMNAHGVVQHG--------HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 +K L L TH++NA G+ G HYTT D+ L+ R P + Q++ Sbjct: 174 AKQLKLQNTHYINADGLTYEGKDGKPDPNHYTTGEDLVKLT-RYALRNPLFAQIVQLQKY 232 Query: 194 EIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + T+ + T+ G G+KTGFT +G+ +V SA L+ +L A Sbjct: 233 VLPASGVHHAYTWETTDTMLSTYAGLTGVKTGFTGEAGYCLVFSAYSSGHRLVGAVLDAK 292 Query: 248 DRNTRNKVSASLLSMGF 264 D R K ++SLL F Sbjct: 293 DEEERFKDASSLLDWAF 309 >gi|218897430|ref|YP_002445841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] gi|218545638|gb|ACK98032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] Length = 437 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 46 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFPQ ++ +I K Sbjct: 166 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKT 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 226 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 286 AKSHTARFDETKKLYDYGFAN 306 >gi|289578326|ref|YP_003476953.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|289528039|gb|ADD02391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] Length = 382 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E AS TK+MT V +K L +T+SK A+ S Sbjct: 36 VIDQETGRVLYEKNSHEKLPMASTTKIMTLLVAL-----EKGNLNDIVTVSKRAASVGGS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + F + MN +K +G THF Sbjct: 91 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHF 150 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 + G + HYTTA D+A+++ R +P++ K I +GK++ N N Sbjct: 151 VTPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 210 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 249 >gi|312135071|ref|YP_004002409.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor owensensis OL] gi|311775122|gb|ADQ04609.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor owensensis OL] Length = 451 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 60/314 (19%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLDTNTGHVI 42 M QFL + + ++ ++ F +I T P+YT L++ +TG ++ Sbjct: 1 MSQFLKKVVLYLIISVL-FFAILFT--YPFYTYSQQEASDKLGLSAKSAILVEAHTGQIL 57 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--KKGS 100 E P+ PAS TK++TA V S+ + L +S A+ P +S++ G Sbjct: 58 FEKNPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPGSSSYYLNPGE 113 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T++ + L +++ SAND A IAE++ + +FV+ MN +K++G ++F+N HG+ Sbjct: 114 TISFQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNSYFVNPHGLHS 173 Query: 161 HGHYTTARDMAILS-----------------WRIKT----DFPQYMHYFQIKGLEIKGKK 199 HYTTA D+++++ +RI T + P++ + I L K K Sbjct: 174 PEHYTTAYDLSLIARQAYQNEILRKIFSTVEYRITTASMHEKPEWQIIYNINKLLRKNSK 233 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 Y + A G+KTG+T + ++ASA + D LIA+IL + D + + L Sbjct: 234 Y--------YYPYATGIKTGYTTQAKRCLIASAKKDDIELIAIILFSEDAFSD---AIKL 282 Query: 260 LSMGFYNKTDRKKI 273 + GF N R+K+ Sbjct: 283 FNYGF-NNFKREKL 295 >gi|322411115|gb|EFY02023.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 393 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 144/311 (46%), Gaps = 46/311 (14%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +I+E N+ ++D NT ++ ++ D P +PAS++K+ T YV+F L + K + T + Sbjct: 36 TISEVNRPKASIVVDANTSDILWQDNIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTV 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T ++ A Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATETDQAIAKIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD+A L + Sbjct: 156 DRINATAKKLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P + + + + G Y PN + + G DG+KTG + ++ FN Sbjct: 216 YPHIIDFTNQSVVHTMVGTPYEEEFHTYNYSLPNNQFGME---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYN-----KTDRKKINYII 277 + +A +G+ LI +++G D + R+ +L GF + K RKK+ ++ Sbjct: 273 MVTAKRGNTRLITIVMGVGDWSDQNGEFYRHPFVNALTEKGFSDSKSLTKAARKKLEKLV 332 Query: 278 KDFYQQNLSNE 288 ++NL + Sbjct: 333 SQKKKENLPKQ 343 >gi|296877208|ref|ZP_06901248.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912] gi|296431728|gb|EFH17535.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912] Length = 440 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG ++ + D + S+ KLM+AYVVF LKE K T +T ++ Sbjct: 67 VIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEADQAISEN 126 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 SNS G + +K+L V S++ + +A ++ + KF+ MN S+ +G+ Sbjct: 127 NLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQYSQEMGM 186 Query: 148 SATHFMNAHGV---VQHGHYT------------TARDMAILSWRIKTDFPQYMHYF-QIK 191 S T + N +G V G+Y TARDM+IL++ I D P+ + Y Q Sbjct: 187 SHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLEYTKQAH 246 Query: 192 GLEIKGKKYP------NTNWAVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++G Y NT+ G F G DG+KTG + + +N A+ +G Q +I VI Sbjct: 247 TTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQRIIEVI 306 Query: 244 LG 245 LG Sbjct: 307 LG 308 >gi|187918466|ref|YP_001884029.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH] gi|119861314|gb|AAX17109.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH] Length = 316 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 26/275 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-- 89 L+D +T + P+ + PASLTKL+T Y ++K L T + IS AS Y Sbjct: 39 VLIDYDTKRIFYAKNPNLVFPPASLTKLVTIYTALVEARKKNIDLKTIVPISSAASYYNL 98 Query: 90 PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLG 146 P +S ++G + + LK L++ S ND A+AIAE + K FV MN NLG Sbjct: 99 PLGSSLMFLEEGHKVNFEELLKGLVISSGNDAAIAIAEFIVGKNLSNFVNLMNINVLNLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------------- 193 L +F++ G +G+ TA +MA+ + +F + +K Sbjct: 159 LVNMNFVDTSGYC-NGNQITALEMALFARTYIEEFEFMLAIHSLKDFIYPRSENLGNTSS 217 Query: 194 -EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------A 246 ++ K N N + + ADG+KTG+ SG N+VA+A + D LIAV+LG + Sbjct: 218 SKMLNLKQENRNVLIFNYPYADGLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNKGINS 277 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 + R ++ L GF N + I I K Y Sbjct: 278 VGEKKRALIAQKLFEYGFSNYSRFPFIGKIRKKIY 312 >gi|291530422|emb|CBK96007.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 409 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 + +TG V+ E+ AS+TKLM + +++ + T IT + A+ S Sbjct: 67 EVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVI 126 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G M+ + ++ +++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N Sbjct: 127 WLNVGEEMSAYDMIRSVVIASANDACVAVCEYITGTEEMFVERMNKRAQELGMSDTHYDN 186 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTF 210 G HYT+A D A+LS + +++ Y +F + ++ G++ NTN + + Sbjct: 187 CVGFDSDTHYTSAYDTALLSAAV-SEYDCYNEFFATRLDYVREGERQTQLLNTNKMMQRY 245 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G KTG T +G + A +G+ L AV LG + R LL+ GF Sbjct: 246 DGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGF 299 >gi|86148565|ref|ZP_01066850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] gi|85833631|gb|EAQ51804.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] Length = 200 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 3/156 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D ++G V+AE + +PASLTK+MT+YVV L+ L + IS+NA Sbjct: 44 FVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVVGQELERGNINLNDDVVISENAWAKN 103 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ ++ + +I++S ND VA+AE + +E FV MN + ++G+ Sbjct: 104 FPDSSKMFIEVGTTVKVEELNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 THF N HG+ Y+T DMA+L + D P Sbjct: 164 KDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPD 199 >gi|171910636|ref|ZP_02926106.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM 4136] Length = 373 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 11/217 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E D AS KL+TA L + L +T+ + ++ P Sbjct: 142 VVDAGTGEVLFEKNADRKAPVASTQKLLTA-----LLLTEDGNLDQILTVEPDDTKCAPV 196 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G L L+VKS+NDIA A+A T +FV+ MN + LG+ T F Sbjct: 197 RLGIKAGEQYPRRQLLTALLVKSSNDIAQALARDNAGTMDEFVKKMNARAAELGMKDTRF 256 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV 207 +N HG+ G Y+TARDMA ++ + P K K NTN + Sbjct: 257 LNPHGLPADGQYSTARDMARVALTVDA-VPDIRRMISTKSFVFKKNDGSWINLENTNRVL 315 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + DGMKTG+ A+G+ +++S + + I V+L Sbjct: 316 RNYAFCDGMKTGYAQAAGYCLISSGEKDNHRRIVVVL 352 >gi|167749174|ref|ZP_02421301.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702] gi|167657852|gb|EDS01982.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702] Length = 389 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 + +TG V+ E+ AS+TKLM + +++ + T IT + A+ S Sbjct: 47 EVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVI 106 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G M+ + ++ +++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N Sbjct: 107 WLNVGEEMSAYDMIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDN 166 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTF 210 G HYT+A D A+LS + +++ Y +F + ++ G++ NTN + + Sbjct: 167 CVGFDSDTHYTSAYDTALLSAAV-SEYDCYNEFFATRLDYVREGERQTQLLNTNKLMQRY 225 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G KTG T +G + A +G+ L AV LG + R LL+ GF Sbjct: 226 DGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNHGF 279 >gi|229097094|ref|ZP_04228060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|229116057|ref|ZP_04245450.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228667392|gb|EEL22841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228686323|gb|EEL40235.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 338 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90 L+D N+G VI + + P A+L+KLMT Y+V L + K L + IS +E Sbjct: 40 LIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNDGKIQLDESVKISNELFQAETT 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N A+A+AE + E F MN +K L LS Sbjct: 100 PMQVTAKDKTTVR--DLLHALLLTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQP 157 Query: 150 THFMNAHGVVQHGHY---TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 + F+N+ G Q + TTA+D A L+ + DFP ++ ++ + K + NTN Sbjct: 158 SPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + F G DG++T F+ + V +A GD LI+VIL + + NT + Sbjct: 218 KMIYSLNENIKFQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|311029700|ref|ZP_07707790.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus sp. m3-13] Length = 414 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 14/254 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ +G+ + E PAS+TK++TA + ++ L +T+S+NA + + Sbjct: 39 LIDSKSGNTLYEKDSKREMYPASITKIVTAIIAI-----EEGNLQDIVTVSENARDQDGT 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATH 151 +G +TL ++ L++ S ND AIAE L +EK F + MN K +G+ T+ Sbjct: 94 RVYLLEGEKVTLKKLVQGLLINSGNDAGTAIAEHLDGSEKAFAKRMNTFVKEKVGVKNTN 153 Query: 152 FMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT----NWA 206 F N HG+ H TTA+DMA I + +K + + K +E G+ + T + Sbjct: 154 FTNPHGLYHPDHVTTAQDMAKIAQYAMKNE--TFREIVGTKEMEWIGEGWETTLFNHHRL 211 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G G+K G+ SG +V SA + LI V + A + K + +LL GF N Sbjct: 212 LWDYEGTTGVKNGYVPESGHTLVTSAKRDGMDLIVVTMKAASKYYIYKDTMTLLDYGFAN 271 Query: 267 -KTDRKKINYIIKD 279 TD K ++ D Sbjct: 272 FITDEIKKGEMVTD 285 >gi|157691298|ref|YP_001485760.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157680056|gb|ABV61200.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 441 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/320 (26%), Positives = 147/320 (45%), Gaps = 44/320 (13%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNP 53 ++Q +V I+A+A++ F +S A+ + P+ L++ +TG ++ + Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MT Y++ + E K T + + + + SN +K + T+ + Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY-- 164 + SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+ HG Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185 Query: 165 ---------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWA---- 206 +A+DMA+L+ + D P+ + I + + PN N+ Sbjct: 186 GTGTDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264 V + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F Sbjct: 246 VKEYEGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305 Query: 265 YNKTDRKKINYIIKDFYQQN 284 N+ +K+ Y++ Sbjct: 306 K--------NFTMKEMYKKG 317 >gi|30019617|ref|NP_831248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29895161|gb|AAP08449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 386 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 13 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 72 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 73 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 128 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 186 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 187 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246 Query: 233 IQGDQSLIAVILGA 246 +G LI V L A Sbjct: 247 SKGGLDLIVVTLSA 260 >gi|218232835|ref|YP_002366250.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus B4264] gi|296502139|ref|YP_003663839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|218160792|gb|ACK60784.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264] gi|296323191|gb|ADH06119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 374 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 +G LI V L A Sbjct: 235 SKGGLDLIVVTLSA 248 >gi|317121890|ref|YP_004101893.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591870|gb|ADU51166.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 541 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 120/252 (47%), Gaps = 25/252 (9%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 +G V+ + P PAS TK++TA V + L +T+S+ A+ S Sbjct: 215 SGQVLWAHNPHQRRAPASTTKILTAIVALEY-----GNLDDTVTVSEYAASTEGSTMDLS 269 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G TL L L+++S ND AVAIAE + +E F + MN T+ LGL THF N HG Sbjct: 270 AGERYTLRELLWGLMLESGNDAAVAIAEHISGSEAAFARLMNETALRLGLRDTHFTNPHG 329 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKG-----KKYPNTNWAV 207 + GHYTTA D+A++ T + YF Q + + +G + +TN + Sbjct: 330 LHDPGHYTTAYDLAVM-----TRYALANDYFARLVCQPEKVLCRGDGDWVRILSSTNRLL 384 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--Y 265 G+KTG T A+G +V+S + + LIAV+ LD R S LL GF + Sbjct: 385 WYREWIRGVKTGTTNAAGPCLVSSGERDGRRLIAVV---LDSGDRWADSERLLEWGFRAF 441 Query: 266 NKTDRKKINYII 277 D + ++ Sbjct: 442 QPVDGGRRGQVV 453 >gi|75763243|ref|ZP_00743000.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489272|gb|EAO52731.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 448 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 28/262 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 56 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 115 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 116 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMK 175 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFP+ ++ +I K Sbjct: 176 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKT 235 Query: 194 EIKGKKYP----NTNWAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G KYP N NW + F G DG+KTG T +G + + LI+V++ Sbjct: 236 FQEGGKYPIDMANFNWMLKXFXLXQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVI 295 Query: 245 GALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 296 KAKSHTARFDETKKLYDYGFAN 317 >gi|229103097|ref|ZP_04233784.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228680286|gb|EEL34476.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 453 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 62 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 122 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMK 181 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+NA G+ G++ +ARD AIL+ R+ DFP+ + +I K Sbjct: 182 HYKFVNATGLTNQDLKGYHLEGTNLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 241 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 KG KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 242 FQKGGKYPIDMVNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 301 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 302 ANSHTARFDETKKLYDYGFAN 322 >gi|194018065|ref|ZP_03056670.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC 7061] gi|194010257|gb|EDW19834.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC 7061] Length = 441 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 36/304 (11%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNP 53 ++Q +V I+A+A++ F +S A+ + P+ L++ +TG ++ + Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MT Y++ + E K T + + + + SN +K + T+ + Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY-- 164 + SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+ HG Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185 Query: 165 ---------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWA---- 206 +A+DMA+L+ + D P+ + I + + PN N+ Sbjct: 186 GTGPDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264 V + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F Sbjct: 246 VKEYKGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305 Query: 265 YNKT 268 N T Sbjct: 306 KNFT 309 >gi|312127682|ref|YP_003992556.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor hydrothermalis 108] gi|311777701|gb|ADQ07187.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor hydrothermalis 108] Length = 451 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 35/239 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E P+ PAS TK++TA V S+ + L +S A+ P Sbjct: 48 LVEAHTGQILFEKNPNLICFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ + +FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKTDF----PQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P++ + Sbjct: 164 HFVNPNGLHSPQHYTTAYDLSLIARQAYQNEILRKIFSTVEYRITTASMHKKPEWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I L K KY + A G+KTG+T + ++ASA + D LIAVIL + D Sbjct: 224 INKLLRKNSKY--------YYPYATGIKTGYTAQAKRCLIASAKKDDIELIAVILSSED 274 >gi|291087166|ref|ZP_06345583.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291075839|gb|EFE13203.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 464 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 24/248 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D V+ E D PAS+TKLMTA +V + L+ +T S++A S Sbjct: 87 LYDATHDRVLYEKNADAQHYPASITKLMTALLVL-----EHCSLSDTVTFSQSAVTNLES 141 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + K G T++ L L++KSAN+IA +AE + + F MN + +LG + Sbjct: 142 GAVTLGVKAGDQFTVEQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLGCTG 201 Query: 150 THFMNAHGVVQHGHYTTARDMAILS---------WRIKT----DFPQYMHYFQIKGLEIK 196 THF+N +G+ HYTTARDMA+++ RI + DFP ++ L + Sbjct: 202 THFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKLTM- 260 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G K N N + G G KTG+T +G +V + LIAVIL + R T + Sbjct: 261 GHKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVILKS--RQTHYADT 318 Query: 257 ASLLSMGF 264 +LL GF Sbjct: 319 KALLDYGF 326 >gi|229149767|ref|ZP_04277997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228633798|gb|EEK90397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] Length = 378 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 +G LI V L A Sbjct: 239 SKGGLDLIVVTLSA 252 >gi|225575599|ref|ZP_03784209.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM 10507] gi|225037193|gb|EEG47439.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM 10507] Length = 423 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 119/249 (47%), Gaps = 23/249 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NTG ++ PAS+TK+MT + + + I+ + S Sbjct: 80 LMDANTGAILYSKNAHKKLYPASITKIMTTALAMQRCNPDDTVTFSDYAITHQDVD--SS 137 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N G M + + + +++ SAN++A AIAE C K FV+ MN T++ +G + THF Sbjct: 138 NIGCLVGEQMKVSDCYRAIMLASANEVATAIAEQSCGNLKNFVELMNQTARQIGCTRTHF 197 Query: 153 MNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMH-----------YFQIKGLEIKGK 198 NA+G+ HYTTA DMA++ +W+ T F + Y + + L K Sbjct: 198 NNANGLPDKHHYTTAHDMALIARYAWK-NTQFRKVATTLEYTIEPTNLYTEPRVLYNHHK 256 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-SA 257 NT + + G G KTG+T A+G +V A +G +LI V+L D T +A Sbjct: 257 MMSNTGYY---YEGCLGGKTGYTQAAGNTLVTYAKRGHMTLICVVLQ--DEGTYTYTDTA 311 Query: 258 SLLSMGFYN 266 +L GF N Sbjct: 312 ALFDYGFNN 320 >gi|219685272|ref|ZP_03540092.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04] gi|219673368|gb|EED30387.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04] Length = 392 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 35/276 (12%) Query: 20 LSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +++AE N+L + L+D +T ++ P+ + PASLTK++T Y +++ Sbjct: 19 VNLAEINELSKHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIK 78 Query: 76 LTTPITISKNASEY-PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 L + + IS +AS Y P NS+ +KG + + LK L V S ND ++AIAE + Sbjct: 79 LKSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDL 138 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMH--- 186 FV MN NLGL HF+ G TA DM+ S+ K F +H Sbjct: 139 NSFVNLMNINVLNLGLLNMHFVEPSGYSNENK-ITALDMSFFVKSYIEKFKFMLNIHSLK 197 Query: 187 YF------------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 YF K L +K K N N + + +DG+KTG+ SG N+VA+A + Sbjct: 198 YFVYPKSKNLGTTLSSKFLNLKQK---NANLLISDYPYSDGLKTGYIKESGLNLVATAQK 254 Query: 235 GDQSLIAVILGA------LDRNTRNKVSASLLSMGF 264 + LIAV+LG R ++ L GF Sbjct: 255 DGRRLIAVVLGVEKGINRFGEKMRALIAKDLFEYGF 290 >gi|312867918|ref|ZP_07728122.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] gi|311096322|gb|EFQ54562.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] Length = 437 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 35/262 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG ++ + D + S+ KLM+AYVVF LKE K T IT ++ Sbjct: 64 VIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVITATEADQAISEN 123 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 SNS G + +K+L V S++ + +A ++ + KF+ MN ++ +G+ Sbjct: 124 NLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQYAQEMGM 183 Query: 148 SATHFMNAHGV---VQHGHYT------------TARDMAILSWRIKTDFPQYMHYF-QIK 191 S T + N +G V G+Y TARDM+IL++ I D P+ + Y Q Sbjct: 184 SHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLEYTKQAH 243 Query: 192 GLEIKGKKYP------NTNWAVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++G Y NT+ G F G DG+KTG + + +N A+ +G Q +I VI Sbjct: 244 TTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQRIIEVI 303 Query: 244 LGA------LDRNTRNKVSASL 259 LG + + RN++ +L Sbjct: 304 LGVGNYDVEIAESYRNQIGNTL 325 >gi|189218825|ref|YP_001939466.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum V4] gi|189185683|gb|ACD82868.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum V4] Length = 241 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 12/222 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D T V+ D P+ PAS TKLMTA +V+ +K + I K + PS Sbjct: 2 LYDATTHKVLFAKNDDVPFAPASTTKLMTALLVY-----EKTGFKGDVRIKKEDTLVQPS 56 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++++ ++ L++ S ND A+A+A + + +KFV+ MN +++LG THF Sbjct: 57 HVPLIAGEVISVNQLVEELLIGSCNDAALALARACSGSVEKFVEEMNQKAQSLGCVNTHF 116 Query: 153 MNAHGVVQHGHYTTARD-MAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAV 207 +N HG+ + G YTTARD M I IK P Q + + + + N N + Sbjct: 117 VNPHGLFEPGQYTTARDLMRIFQAAIK--IPAINQICQTRKIHFQNGGISRVMYNHNRLL 174 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 G ++G KTG+T S A+ + +L +L + D+ Sbjct: 175 GRYMGMGPAKTGWTRISLHTYAAACERNGHTLYLTLLHSPDK 216 >gi|328543897|ref|YP_004304006.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326413641|gb|ADZ70704.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 393 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D ++ V+ PD + P SL K+MTA VVF LK + T +S++A Sbjct: 44 LIDHSSRTVLYAKAPDEAFAPGSLAKVMTAAVVFDALKSGEVFEETLFKVSEHAWRTGGA 103 Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST S + + + L+ L+V +AND A+ +AE L +E F Q M + +G+ Sbjct: 104 PSRTSTMFAAVRSEIPVADLLRGLLVHNANDAAIVLAEGLAGSETAFAQRMTALATRIGM 163 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 ++ F N G G+ TTARDMA L+ I F + N N + Sbjct: 164 ISSRFANPTGFEDPGNRTTARDMARLAAYILDTHRTRYELFSLPEFTWNRIFQRNKNPLL 223 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G G DG+ G + A G++ +AS + + +IAVI G Sbjct: 224 GEIRGLDGLGAGLSQADGYSGLASVERDGRRVIAVIAG 261 >gi|312135096|ref|YP_004002434.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor owensensis OL] gi|311775147|gb|ADQ04634.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor owensensis OL] Length = 382 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 126/260 (48%), Gaps = 20/260 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPAS 55 +R F++I+ M + + + +E N LP + ++ TG ++ D AS Sbjct: 10 VRVFVLILLMIVNTEVAVTCYASEKN-LPQVSSKSAIAIEWMTGKILFRKNEDLKLPMAS 68 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA +V K I I A S+ +KG + + + L L++ S Sbjct: 69 TTKIMTAILVLENCDVNKE-----IEIPPQAVGVQGSSMYLEKGEKLKIIDLLYGLMLSS 123 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-S 174 ND AVA+A KKFV MN +K LGLS T F + HG+ Q HYTTA D+A+L + Sbjct: 124 GNDAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTA 183 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNI 228 + +K P + + E+ P N N + + GA+G+KTGFT +G + Sbjct: 184 YAMKN--PIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCL 241 Query: 229 VASAIQGDQSLIAVILGALD 248 V SA + D +I V+L A D Sbjct: 242 VTSACRDDFRVICVVLNAQD 261 >gi|229547447|ref|ZP_04436172.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322] gi|256854799|ref|ZP_05560163.1| DD-carboxypeptidase [Enterococcus faecalis T8] gi|229307479|gb|EEN73466.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322] gi|256710359|gb|EEU25403.1| DD-carboxypeptidase [Enterococcus faecalis T8] gi|315028349|gb|EFT40281.1| beta-lactamase [Enterococcus faecalis TX4000] Length = 493 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDSAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|30262550|ref|NP_844927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47527848|ref|YP_019197.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165869045|ref|ZP_02213705.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167632709|ref|ZP_02391036.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|167637949|ref|ZP_02396228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|170685562|ref|ZP_02876786.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|170704398|ref|ZP_02894864.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|177649431|ref|ZP_02932433.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190565326|ref|ZP_03018246.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|196036722|ref|ZP_03104114.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|227814631|ref|YP_002814640.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|228927615|ref|ZP_04090667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946196|ref|ZP_04108529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122097|ref|ZP_04251313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|229603255|ref|YP_002866873.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|254685126|ref|ZP_05148986.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|254722535|ref|ZP_05184323.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254737577|ref|ZP_05195280.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] gi|254743240|ref|ZP_05200925.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|254751892|ref|ZP_05203929.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254760412|ref|ZP_05212436.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|30257182|gb|AAP26413.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47502996|gb|AAT31672.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164715771|gb|EDR21288.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167514498|gb|EDR89865.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|167533007|gb|EDR95643.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|170130199|gb|EDS99060.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|170670922|gb|EDT21661.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|172084505|gb|EDT69563.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190563353|gb|EDV17318.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|195990686|gb|EDX54662.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|227004352|gb|ACP14095.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] gi|228661440|gb|EEL17064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228813487|gb|EEM59775.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832095|gb|EEM77680.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229267663|gb|ACQ49300.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 338 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + ++ A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|323705335|ref|ZP_08116910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535237|gb|EGB25013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 381 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 35/265 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYT-----LLDTNTGHVIAENYPDHP 50 M++ LV++ IF FL AE K P ++D +G ++ E Sbjct: 1 MKKILVLVL------IFTFLMTPTNIEAENLKPPQIAAKAAIVMDQKSGRILFEKNISEK 54 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 AS TK+MT + + L +T+SK A+ S+ G +++ N L Sbjct: 55 LPMASTTKIMTLLLALEY-----GNLNDIVTVSKKAASVGGSSIWLSPGEKISMINLLYG 109 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--VVQHGHYTTAR 168 L++ S ND A AIAE + + KFV+ MN +K +G T+F+ G + HYTTA Sbjct: 110 LMLNSGNDAATAIAEHISGSVDKFVELMNKKAKEIGAYNTNFVTPSGLDIGIDNHYTTAY 169 Query: 169 DMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYP----NTNWAVGTFLGADGMKTG 219 D+A+++ + F Y + +I K + GK+Y N N + + GADG+KTG Sbjct: 170 DLALIT---RYAFNNYNKFAEIVSTKEKTIPWDGKEYDRYLRNKNKMLWQYEGADGVKTG 226 Query: 220 FTCASGFNIVASAIQGDQSLIAVIL 244 FT +G +VASA + Q LI+V+L Sbjct: 227 FTNKAGRCLVASASRNGQRLISVVL 251 >gi|319405647|emb|CBI79270.1| Penicillin-binding protein [Bartonella sp. AR 15-3] Length = 390 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 27/239 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--P 90 + D NT ++ E D + PASL KLMTA VVF LK+ T +S+NA Sbjct: 35 IFDDNTDTILFEKQSDVVFFPASLVKLMTAEVVFYQLKKGFLNKTQKFKVSENAWRKGGA 94 Query: 91 PSNST--FKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PS +T F K T +++ + L+ LI+ + ND A+ +AE + E F + MN +K LGL Sbjct: 95 PSGTTTMFAKEKTEISVFDLLRGLIIVNGNDAAITLAEGIAGNEANFAKLMNKRAKTLGL 154 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 +HF+NA G+ + G + T RD+ L+ I ++P Y + + P W Sbjct: 155 LQSHFVNATGLPEKGQFITLRDIITLARHISREYPDYYALY----------REPKFTWNK 204 Query: 208 GTF------------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 T + +G+ G++ GF+ V SA + + + + G ++ R K Sbjct: 205 ITQHNKNSLLFQENDIEIEGLGFGYSEEIGFSTVVSACKKQRRIFLAVNGLQNKKERTK 263 >gi|297544605|ref|YP_003676907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842380|gb|ADH60896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 382 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 14/220 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG V+ E AS TK+MT V +K L +T+SK A+ S Sbjct: 36 VIDQETGRVLYEKNSHEKLPMASTTKIMTLLVAL-----EKGNLKDIVTVSKRAASVGGS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + +++ L L++ S ND A AIAE + + + F + MN +K +G THF Sbjct: 91 SIWLSPGEKIDMESLLYGLMLNSGNDAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHF 150 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP----NTN 204 G + HYTTA D+A+++ R +P++ K I +GK++ N N Sbjct: 151 ATPSGLDIGIDDHYTTAYDLALIT-RYAFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + GADG+KTGFT +G +V+SA + + IAV+L Sbjct: 210 KLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVL 249 >gi|210621813|ref|ZP_03292842.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275] gi|210154577|gb|EEA85583.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275] Length = 420 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 25/267 (9%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + I N + L+D TG VI PD AS++K+MT YV +K + Sbjct: 32 PVVEIYSKNSI----LVDQKTGRVITSKEPDKQVPLASISKVMTFYVAQDAIKNGEVKKD 87 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 +TI K + S K+G + + LK L++ SAND AVAIA +CK + FV Sbjct: 88 DLVTIDKKMLKVSGSTMHLKEGEKVKFNELLKGLMIVSANDGAVAIASHVCKGDVDAFVD 147 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMAILSWRIKTDFPQ--- 183 MN +K LG+ T+F+N +G+ + +++TARD+A ++ + D+ + Sbjct: 148 RMNAKAKELGMKNTYFINPNGLPIYDWTKKDGDPKQNHSTARDIATMTKNLLDDYEEETI 207 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV-------ASAIQGD 236 + ++ + Y NTN + DG+KTG+T +G+ +V D Sbjct: 208 AITDCKLDHAPSRDCNYYNTNPLLHMHSNVDGLKTGYTDLAGYCLVFTDKMNSDGKSDMD 267 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMG 263 +I V++G + R + + +L ++G Sbjct: 268 NRMIGVVMGNWCKEDRVRSANALYNLG 294 >gi|218903688|ref|YP_002451522.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|228915143|ref|ZP_04078740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933848|ref|ZP_04096693.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|218538327|gb|ACK90725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|228825804|gb|EEM71592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844572|gb|EEM89626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 338 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + ++ A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|332297402|ref|YP_004439324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense DSM 12168] gi|332180505|gb|AEE16193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense DSM 12168] Length = 457 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 22/233 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT--TPITISKNASEYP 90 L+DT G ++ E D PAS+TKL+ YVVF + + L+ P+ A P Sbjct: 80 LVDTANGCILFEKNADDVIPPASMTKLVVMYVVFQEIAAGRISLSDVVPLPPESWAVNAP 139 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P++S +G T+TL+ L L V S ND AVA+A+ + + FV MN + LGL Sbjct: 140 PNSSLMFLGQGQTVTLEELLLGLAVASGNDAAVAVADYVSGSVGAFVDRMNAEMEKLGLE 199 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF---------QIKGLEI---- 195 T F+ G + + TT R+ A + +P+ + F Q K L Sbjct: 200 HTRFVEPSGYSEL-NLTTPREFAAFARTYVNRYPEALEKFHSARSIAYPQEKNLAPWHAG 258 Query: 196 KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G + P +TN +G G DG+KTGF SG+N+ +A +G +AV++ Sbjct: 259 TGSQPPIVQQSTNKLLGVLPGCDGLKTGFIYESGYNLSLTAERGGTRFLAVMM 311 >gi|229173210|ref|ZP_04300759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228610294|gb|EEK67567.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 338 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA D+A L+ ++ DFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKQSTTTAIDVAKLATQLVKDFPDVLNITELTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL + + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVILDSNEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|219684372|ref|ZP_03539316.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr] gi|219672361|gb|EED29414.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr] Length = 392 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 87/276 (31%), Positives = 128/276 (46%), Gaps = 35/276 (12%) Query: 20 LSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +++AE N+L + L+D +T ++ P+ + PASLTK++T Y +++ Sbjct: 19 VNLAEINELSKHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIK 78 Query: 76 LTTPITISKNASEY-PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 L + + IS AS Y P NS+ +KG + + LK L V S ND ++AIAE + Sbjct: 79 LKSIVPISDAASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDL 138 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMH--- 186 FV MN NLGL HF+ G TA DMA S+ K F +H Sbjct: 139 NSFVNLMNINVLNLGLLNMHFVEPSGYSNENK-ITALDMAFFVKSYIEKFKFMLNIHSLK 197 Query: 187 YF------------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 YF K L +K K N N + + +DG+KTG+ SG N+VA+A + Sbjct: 198 YFVYPKSKNLGTTLSSKFLNLKQK---NANLLISDYPYSDGLKTGYIKESGLNLVATAQK 254 Query: 235 GDQSLIAVILGA------LDRNTRNKVSASLLSMGF 264 + LIAV+LG R ++ L GF Sbjct: 255 YGRRLIAVVLGVEKGINRFGEKMRALIAKDLFEYGF 290 >gi|256761046|ref|ZP_05501626.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3] gi|256682297|gb|EEU21992.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3] Length = 441 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 12 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 71 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 72 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 131 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 132 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 191 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 192 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 243 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 244 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 286 >gi|255970680|ref|ZP_05421266.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1] gi|255961698|gb|EET94174.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1] Length = 441 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 12 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 71 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 72 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 131 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 132 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 191 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 192 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 243 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 244 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 286 >gi|28211671|ref|NP_782615.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28204113|gb|AAO36552.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 419 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 129/264 (48%), Gaps = 30/264 (11%) Query: 23 AETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 A+T+K P + L+D TG V+ E + P+ PAS TK+MTA L + L Sbjct: 32 AKTSKPPSVSADGAILMDAKTGKVLYEKNINKPYPPASTTKIMTA-----LLTLENCNLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + K S +G + + + L L+++SAND A A+AE + + F + Sbjct: 87 DEVVVGKKPPLADGSKIFIHEGEKLKVKDLLYALLLESANDAAEALAEHIGGSINDFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY--------FQ 189 MN +K LG + T+F+N +G+ H TTA+D+A+ I + QY Y ++ Sbjct: 147 MNKRAKELGCTNTNFVNPNGLYNAKHRTTAQDLAL----IMKEVSQYEDYRKISNTITYK 202 Query: 190 IKGLEIKGKKYP--NTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 IK K+ P N N V F G +G KTG+T S + V SA +GD LI V Sbjct: 203 IKPTNKSKKERPLWNKNKLVQQNSKYYFKGCNGGKTGYTTQSQHSYVVSANRGDFQLIVV 262 Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266 ++ + T + S +LL+ GF N Sbjct: 263 LIHD-SKKTFFEDSVNLLNYGFNN 285 >gi|228901076|ref|ZP_04065285.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228858592|gb|EEN03043.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 442 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ G++ +ARD AIL+ R+ DFP+ ++ +I K Sbjct: 171 DYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 291 AKSHTARFDETKKLYDYGFAN 311 >gi|23098797|ref|NP_692263.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777024|dbj|BAC13298.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 393 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 22/278 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-LPYYT----LLDTNTGHVIAENYPDHPWNPAS 55 +R+F ++I + L N F + S ++ L ++ L++ +G ++AE + PAS Sbjct: 2 LRKFYIMIIITSL-NFFIWTSTTLADEDLSLHSESAILMEAESGQILAEKNANQQMYPAS 60 Query: 56 LTKLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +TK+ TA YV+ + L+ + IS+ A+E + +G ++L +K L++ Sbjct: 61 VTKIATAIYVI------ENGNLSEEVEISEKATEADGTTVFLAEGEKVSLGKLVKGLLIN 114 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND VAIAE + + ++F + M + G+ T+F N HG+ HYTTA D+A + Sbjct: 115 SGNDAGVAIAEHMNGSVREFSKEMTEFFEEKAGIENTNFDNPHGLFDDNHYTTAEDLAKI 174 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-----NWAVGT--FLGADGMKTGFTCASGF 226 + + +++ F +K ++ + K + T G + G G K G+ SGF Sbjct: 175 T-KYAMQNEKFVKLFGMKSVDWESKTWETTILNHHRMVKGEIPYDGVTGGKNGYVSRSGF 233 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +V +A Q +LIAV L + + LL GF Sbjct: 234 TLVTTAEQDGMNLIAVTLKTPLSEQSYEDTVELLDYGF 271 >gi|312793435|ref|YP_004026358.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180575|gb|ADQ40745.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 451 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 35/239 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E P+ PAS TK++TA V S+ + L+ +S A+ P Sbjct: 48 LVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ + +FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKT----DFPQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P + + Sbjct: 164 HFVNPNGLHSPQHYTTAYDLSLIARQAYQNEILKKIFSTVEYRITTASMHKKPDWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I L K +Y + A G+KTG+T + ++ASA + D LIAVIL + D Sbjct: 224 INKLLRKNSQY--------YYPYATGIKTGYTAQAKRCLIASAKKNDIELIAVILSSED 274 >gi|257420425|ref|ZP_05597415.1| DD-carboxypeptidase [Enterococcus faecalis X98] gi|257162249|gb|EEU92209.1| DD-carboxypeptidase [Enterococcus faecalis X98] Length = 475 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|255974260|ref|ZP_05424846.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2] gi|255967132|gb|EET97754.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2] Length = 441 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 12 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 71 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 72 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 131 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 132 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 191 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 192 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 243 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 244 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 286 >gi|167462338|ref|ZP_02327427.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 395 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 30/247 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ D AS TK+MTA + ++ L+ + + KNA+ S Sbjct: 38 LIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAI-----EQGRLSDMVKVGKNAAGKEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G M+L N L ++++S ND A+ IAE + + + F MN + LG++ THF Sbjct: 93 SLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGMAHTHF 152 Query: 153 MNAHGV---VQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW--- 205 N G+ + HY++A DMA L ++ +K P + + K K PN NW Sbjct: 153 TNPSGLDDGKEMKHYSSANDMAKLTAYALKN--PVFRDIVKTK---TKKAPNPNANWDYS 207 Query: 206 ------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS--A 257 + + GADG+KTG+T + +V+SA +G+Q L AV L N N + A Sbjct: 208 WSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTL-----NDGNDWADHA 262 Query: 258 SLLSMGF 264 LL GF Sbjct: 263 KLLDYGF 269 >gi|256962967|ref|ZP_05567138.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis HIP11704] gi|256953463|gb|EEU70095.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis HIP11704] Length = 475 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|256960474|ref|ZP_05564645.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96] gi|256950970|gb|EEU67602.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96] Length = 475 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|288553434|ref|YP_003425369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288544594|gb|ADC48477.1| D-alanyl-D-alanine carboxypeptidase S11 serine type [Bacillus pseudofirmus OF4] Length = 374 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 11/237 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG + PAS+TK++TA V ++ L + +S+N + + Sbjct: 45 LIDGATGETLWGKDSTKRMYPASVTKIITAIVAI-----EEGNLEEKVAVSENVMDVIGT 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATH 151 G ++L ++ L++ S ND +AIAE + +E+ F + MN + +G+ +H Sbjct: 100 RVYLLPGEEVSLLKLVQGLMINSGNDAGLAIAEHMDGSEEAFAKRMNRFVEEEIGVKDSH 159 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AV 207 F N HG+ HYTTA+D+A+++ + + + Q K +E G+ + T + + Sbjct: 160 FTNPHGLFDENHYTTAKDLAMIT-KYAMENEVFKEIAQTKEMEWIGEGWETTIYNHHRML 218 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G G+K GF SGF + + + D LIAV L A + +A+L GF Sbjct: 219 WDYDGVTGVKNGFVQRSGFTLSTAVERDDMELIAVTLNAPAAKVSYQDTAALFDYGF 275 >gi|89895253|ref|YP_518740.1| hypothetical protein DSY2507 [Desulfitobacterium hafniense Y51] gi|89334701|dbj|BAE84296.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 379 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 16/243 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ + PAS TK++TA + K + + +S+ A+ S Sbjct: 50 LMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKPDEL-----VVVSEKAAAVGES 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + L + +VKS ND VAIAE + TE+ FV+ MN + LG THF Sbjct: 105 TIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWA 206 N +G+ H +TA D+A+++ R P + ++K EI + NTN Sbjct: 165 ENTNGLPNKNHVSTAYDLALMA-RYGLQIPAFTSITRLKETEIHFIEPDFFMNLRNTNKL 223 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + DG+KTG T A+G +VA A + + LIAV+L A DR + LL GF N Sbjct: 224 LWNYPYTDGVKTGTTTAAGKCLVAGATKDGRQLIAVVLHAPDRFGD---AQKLLEWGF-N 279 Query: 267 KTD 269 +T+ Sbjct: 280 ETE 282 >gi|257091370|ref|ZP_05585731.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188] gi|257417972|ref|ZP_05594966.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11] gi|257000182|gb|EEU86702.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188] gi|257159800|gb|EEU89760.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11] Length = 475 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|227517264|ref|ZP_03947313.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104] gi|227075271|gb|EEI13234.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|229145091|ref|ZP_04273484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228638412|gb|EEK94849.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] Length = 442 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 35/279 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFP+ ++ +I K Sbjct: 171 DYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T + + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEARDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 A R + L GF N+ +K+FY ++ Sbjct: 291 AKSHTARFDETKKLYDYGF--------ANFEVKNFYGKD 321 >gi|315031813|gb|EFT43745.1| putative beta-lactamase [Enterococcus faecalis TX0017] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|322390800|ref|ZP_08064310.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] gi|321142470|gb|EFX37938.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] Length = 440 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 35/267 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG ++ + D + S+ KLM+AYVVF LKE K T +T ++ Sbjct: 67 VIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEADQAISEN 126 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 SNS G + +K+L V S++ + +A ++ + KF+ MN ++ +G+ Sbjct: 127 NLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQYAQEMGM 186 Query: 148 SATHFMNAHGV---VQHGHYT------------TARDMAILSWRIKTDFPQYMHYF-QIK 191 S T + N +G V G+Y TARDM+IL++ I D P+ + Y Q Sbjct: 187 SHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLEYTKQAH 246 Query: 192 GLEIKGKKYP------NTNWAVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++G Y NT+ G F G DG+KTG + + +N A+ +G Q +I VI Sbjct: 247 TTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQRIIEVI 306 Query: 244 LGA------LDRNTRNKVSASLLSMGF 264 LG + + RN++ +L F Sbjct: 307 LGVGNYDVEIAESYRNQIGNTLAEKMF 333 >gi|294779975|ref|ZP_06745355.1| putative beta-lactamase [Enterococcus faecalis PC1.1] gi|294452956|gb|EFG21378.1| putative beta-lactamase [Enterococcus faecalis PC1.1] gi|315034829|gb|EFT46761.1| putative beta-lactamase [Enterococcus faecalis TX0027] gi|315146578|gb|EFT90594.1| putative beta-lactamase [Enterococcus faecalis TX4244] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|257083197|ref|ZP_05577558.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1] gi|256991227|gb|EEU78529.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1] Length = 475 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|256958405|ref|ZP_05562576.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5] gi|257078283|ref|ZP_05572644.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1] gi|256948901|gb|EEU65533.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5] gi|256986313|gb|EEU73615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1] Length = 475 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|256618116|ref|ZP_05474962.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC 4200] gi|257088239|ref|ZP_05582600.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6] gi|256597643|gb|EEU16819.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC 4200] gi|256996269|gb|EEU83571.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6] Length = 475 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|52142940|ref|YP_083889.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|51976409|gb|AAU17959.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] Length = 338 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ + + P A+L+KLMT Y+ L E L + IS S Sbjct: 40 LINAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 T+ + L L++ N A+A+AE + E KF Q MN +K L LS + Sbjct: 100 PIQVISKDKTTVRDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKQLKLSQLSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 160 FLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + LL Sbjct: 220 IYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|329576780|gb|EGG58273.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX1467] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|315154713|gb|EFT98729.1| putative beta-lactamase [Enterococcus faecalis TX0043] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|315171194|gb|EFU15211.1| putative beta-lactamase [Enterococcus faecalis TX1342] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|322381780|ref|ZP_08055734.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154168|gb|EFX46490.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 386 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 30/247 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ D AS TK+MTA + ++ L+ + + KNA+ S Sbjct: 29 LIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAI-----EQGRLSDMVKVGKNAAGKEGS 83 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G M+L N L ++++S ND A+ IAE + + + F MN + LG++ THF Sbjct: 84 SLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGMAHTHF 143 Query: 153 MNAHGV---VQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW--- 205 N G+ + HY++A DMA L ++ +K P + + K K PN NW Sbjct: 144 TNPSGLDDGKEMKHYSSANDMAKLTAYALKN--PVFRDIVKTK---TKKAPNPNANWDYS 198 Query: 206 ------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS--A 257 + + GADG+KTG+T + +V+SA +G+Q L AV L N N + A Sbjct: 199 WSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTL-----NDGNDWADHA 253 Query: 258 SLLSMGF 264 LL GF Sbjct: 254 KLLDYGF 260 >gi|307276651|ref|ZP_07557769.1| putative beta-lactamase [Enterococcus faecalis TX2134] gi|306506761|gb|EFM75913.1| putative beta-lactamase [Enterococcus faecalis TX2134] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|228991455|ref|ZP_04151407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228768257|gb|EEM16868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 329 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + ++ + D P++ ASL+K+MT Y+V +++ K + IS ++ + + Sbjct: 33 LIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQMEGN 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 N +T+ + +++ S N AV +AE + K+E+ F MN + LGLS T+ Sbjct: 93 NIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKSEQDFTNLMNEKATQLGLSNKTY 152 Query: 152 FMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV 207 F NA GV+ Q TA D + L+ + TD+P + Q+ + K NTN + Sbjct: 153 FANATGVINKQKESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTNKML 212 Query: 208 GT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + F G DG++T F+ +G++ ++A QG++ I++++ A N+ + L + Sbjct: 213 YSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVMEANGENSAFIETKKLFT 272 Query: 262 MG 263 G Sbjct: 273 YG 274 >gi|319939487|ref|ZP_08013847.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] gi|319811473|gb|EFW07768.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] Length = 458 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 29/266 (10%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P + N+ ++D NTG+++ ++ D +PAS++KLMT Y+VF +++ Sbjct: 28 MAQKMYPDEKVNPINRPKSSLIVDANTGNILWQDNIDEVRDPASMSKLMTLYLVFEAIQQ 87 Query: 72 KKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K T I + A Y SN+ G T+ + + V S+N V +A L Sbjct: 88 GKLSENTVIKATPRDEAIAKIYEISNNKIVAGVDYTVSELITMTAVPSSNATTVMLANYL 147 Query: 128 CKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMA 171 + F+ MN +K LG++ T + NA G G Y TTARD+A Sbjct: 148 SNNDPDTFLDMMNAKAKALGMTNTKWFNASGAAAVSFKGLYTPQRYDNNAANQTTARDLA 207 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTC 222 IL + ++P ++Y + + KG Y T N+++ G +G+KTG + Sbjct: 208 ILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSLPGAKYGIEGVEGLKTGSSP 267 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 FN +A+ +G+Q LI+VI+G D Sbjct: 268 RGAFNYIATIKRGEQRLISVIMGVGD 293 >gi|229006378|ref|ZP_04164057.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] gi|228754877|gb|EEM04243.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] Length = 201 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 6/182 (3%) Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT ++ +++ K L + S++A+ S + G MT++ LK + + S Sbjct: 1 MTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 60 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY+TA DM+I++ Sbjct: 61 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTAYDMSIMAK 120 Query: 176 RIKTDFP---QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + +P +Y ++ E KK+ NTN V + G DG+KTGFT + + + A Sbjct: 121 EL-MKYPLIRKYTGKYEDYLRENTEKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 179 Query: 231 SA 232 SA Sbjct: 180 SA 181 >gi|307273627|ref|ZP_07554855.1| putative beta-lactamase [Enterococcus faecalis TX0855] gi|306509640|gb|EFM78682.1| putative beta-lactamase [Enterococcus faecalis TX0855] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|293385132|ref|ZP_06630958.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis R712] gi|293389105|ref|ZP_06633577.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis S613] gi|312906684|ref|ZP_07765684.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512] gi|312910854|ref|ZP_07769690.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516] gi|291077609|gb|EFE14973.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis R712] gi|291081573|gb|EFE18536.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis S613] gi|310627332|gb|EFQ10615.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512] gi|311288877|gb|EFQ67433.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|261222159|ref|ZP_05936440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|265998124|ref|ZP_06110681.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|260920743|gb|EEX87396.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|262552592|gb|EEZ08582.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] Length = 199 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ A Sbjct: 38 KAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYA 97 Query: 87 ---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 98 WRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQR 157 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +K LGLS++ F+N+ G+ G T D+ L+ I P+ Sbjct: 158 AKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPE 199 >gi|47570219|ref|ZP_00240872.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|47553125|gb|EAL11523.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] Length = 338 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D ++G V+ + + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LIDAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + + L++ N A+A+AE + E F Q MN +K+L LS + Sbjct: 100 PIQVTSKDKTTV--RDLIHALLLTGNNRSALALAEHIAGNEDNFTQLMNKKAKHLKLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTATEVAKLATQLVTDFPDVLNVTKLTSYQFTFKNTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSNNGNYSFVSTAKRGDTRLISVILDAENENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|291545877|emb|CBL18985.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 277 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 126/260 (48%), Gaps = 23/260 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-YTLLDTNTGHVI--AENYPDHPWNPASLT 57 M +++ A+ ++ IFP + + N L+D G V+ E Y P AS T Sbjct: 1 MAAVVLVTAVLIICQIFPVKAADDENLYALSAVLMDGENGRVLYGKEAYKGRP--NASTT 58 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + K + +S NA+ P + ++G L++ L L++KS N Sbjct: 59 KVMTCILALELAKGDDY-----VQVSGNAASQPQTRLGMREGQQFYLEDLLYSLMLKSHN 113 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMA-I 172 D AVAIAE + + + F + MN +K LG THF+ +G+ H+TTARD+A I Sbjct: 114 DSAVAIAEHIGGSVEGFAEKMNEKAKELGCKDTHFVTPNGLDGEDEGGIHHTTARDLALI 173 Query: 173 LSWRIKTDFPQYMHYFQIKGL---EIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGF 226 +++ IK ++H Q + +I GKK+ NTN + G KTGFT +G+ Sbjct: 174 MAYAIKN--ATFVHITQTRDYTFTDISGKKHYSVHNTNAFLDMETGVISGKTGFTGNAGY 231 Query: 227 NIVASAIQGDQSLIAVILGA 246 V + Q ++ I +LG Sbjct: 232 CYVCAVRQDERLFIVALLGC 251 >gi|300861515|ref|ZP_07107599.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11] gi|312902122|ref|ZP_07761382.1| putative beta-lactamase [Enterococcus faecalis TX0470] gi|300848976|gb|EFK76729.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11] gi|311290786|gb|EFQ69342.1| putative beta-lactamase [Enterococcus faecalis TX0470] gi|315026425|gb|EFT38357.1| putative beta-lactamase [Enterococcus faecalis TX2137] gi|315144141|gb|EFT88157.1| putative beta-lactamase [Enterococcus faecalis TX2141] gi|315167228|gb|EFU11245.1| putative beta-lactamase [Enterococcus faecalis TX1341] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|312876048|ref|ZP_07736037.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor lactoaceticus 6A] gi|311797246|gb|EFR13586.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor lactoaceticus 6A] Length = 451 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 35/239 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E P+ PAS TK++TA V S+ + L+ +S A+ P Sbjct: 48 LVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ + +FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAKNS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKTDF----PQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P + + Sbjct: 164 HFVNPNGLHSPQHYTTAYDLSLIARQAYQNEILKKIFSTVEYRITTASMHKKPDWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I L K +Y + A G+KTG+T + ++ASA + D LIAVIL + D Sbjct: 224 INKLLRKNSQY--------YYPYATGIKTGYTAQAKRCLIASAKKNDIELIAVILSSED 274 >gi|327536245|gb|AEA95079.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis OG1RF] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|315150905|gb|EFT94921.1| putative beta-lactamase [Enterococcus faecalis TX0012] Length = 493 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|29377583|ref|NP_816737.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583] gi|227554548|ref|ZP_03984595.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22] gi|229548016|ref|ZP_04436741.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC 29200] gi|312905434|ref|ZP_07764548.1| putative beta-lactamase [Enterococcus faecalis TX0635] gi|312953223|ref|ZP_07772069.1| putative beta-lactamase [Enterococcus faecalis TX0102] gi|12188896|emb|CAC21495.1| DD-carboxypeptidase [Enterococcus faecalis] gi|29345050|gb|AAO82807.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583] gi|227176346|gb|EEI57318.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22] gi|229306892|gb|EEN72888.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC 29200] gi|310628840|gb|EFQ12123.1| putative beta-lactamase [Enterococcus faecalis TX0102] gi|310631163|gb|EFQ14446.1| putative beta-lactamase [Enterococcus faecalis TX0635] gi|315152792|gb|EFT96808.1| putative beta-lactamase [Enterococcus faecalis TX0031] gi|315159373|gb|EFU03390.1| putative beta-lactamase [Enterococcus faecalis TX0312] gi|315161196|gb|EFU05213.1| putative beta-lactamase [Enterococcus faecalis TX0645] gi|315573276|gb|EFU85467.1| putative beta-lactamase [Enterococcus faecalis TX0309B] gi|315577112|gb|EFU89303.1| putative beta-lactamase [Enterococcus faecalis TX0630] gi|315581150|gb|EFU93341.1| putative beta-lactamase [Enterococcus faecalis TX0309A] gi|323479056|gb|ADX78495.1| D-alanyl-D-alanine carboxypeptidase family protein [Enterococcus faecalis 62] Length = 493 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|307292145|ref|ZP_07572011.1| putative beta-lactamase [Enterococcus faecalis TX0411] gi|306496798|gb|EFM66349.1| putative beta-lactamase [Enterococcus faecalis TX0411] Length = 493 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|315172967|gb|EFU16984.1| putative beta-lactamase [Enterococcus faecalis TX1346] Length = 493 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|257080473|ref|ZP_05574834.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol] gi|256988503|gb|EEU75805.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol] Length = 475 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|77411815|ref|ZP_00788150.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae CJB111] gi|77162150|gb|EAO73126.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae CJB111] Length = 393 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 50/266 (18%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + NK P +++ N GH++ E+ D +PAS++K+ T Y++F L + K L T +T Sbjct: 40 VKDINK-PKASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVT 98 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQ 136 ++ Y SN+ G + + + V S+N + IA L + F++ Sbjct: 99 ATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIK 158 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDF 181 +N T+K LG++ THF N G V +G Y TTARD++IL++ + Sbjct: 159 RINETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKY 218 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-------------------FLGADGMKTGFTC 222 P ++Y KYP VGT G DG+KTG + Sbjct: 219 PDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 ++ FN + +A + + LI V+LG D Sbjct: 269 SAAFNALVTAKRQNTRLITVVLGVGD 294 >gi|307284847|ref|ZP_07565003.1| putative beta-lactamase [Enterococcus faecalis TX0860] gi|306503106|gb|EFM72363.1| putative beta-lactamase [Enterococcus faecalis TX0860] Length = 493 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|312867167|ref|ZP_07727377.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] gi|311097296|gb|EFQ55530.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] Length = 443 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 33/268 (12%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D NTG+V+ ++ D P +PAS++KLMT Y++F + Sbjct: 25 MAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDEPRDPASMSKLMTLYLLFEDMAS 84 Query: 72 KKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K T I AS+ Y SN+ G T+ + + +V S+N + +A Sbjct: 85 GKIGKDT--VIKATASDQAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLAN 142 Query: 126 SLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVV---QHGHY------------TTARD 169 + + F++ MN +K LG++ T + N G G+Y TTARD Sbjct: 143 LMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQGYYPVNNYPNDAANQTTARD 202 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGF 220 + IL + +P ++Y + + KG Y T N+++ G DG+KTG Sbjct: 203 LGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGS 262 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 + FN +A+ +G+Q LIAVI+G D Sbjct: 263 SPRGAFNYIATIKRGNQRLIAVIMGVGD 290 >gi|307288894|ref|ZP_07568867.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX0109] gi|306500166|gb|EFM69510.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX0109] gi|315164420|gb|EFU08437.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX1302] Length = 493 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|229077103|ref|ZP_04209808.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|228706203|gb|EEL58487.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 453 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 62 LIEESSGKILYEKNADESLAIASMTKMMSEYLVHEAMDKGKLKWDQKVKISEYAHKISQD 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 122 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMK 181 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+NA G+ H TT ARD AIL+ R+ DFP+ + +I K Sbjct: 182 HYKFVNATGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 241 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 242 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 301 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 302 ANSHTARFDETKKLYDYGFAN 322 >gi|228943200|ref|ZP_04105668.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975976|ref|ZP_04136496.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979109|ref|ZP_04139457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228780635|gb|EEM28854.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228783733|gb|EEM31792.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816479|gb|EEM62636.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 442 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LIEANSGKILYKKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFP+ + +I K Sbjct: 171 DYKFVNSTGLTNNDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 291 AKSHTARFDETKKLYDYGFAN 311 >gi|22536331|ref|NP_687182.1| penicillin-binding protein 4 [Streptococcus agalactiae 2603V/R] gi|76787492|ref|YP_328877.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909] gi|77405132|ref|ZP_00782231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B] gi|22533155|gb|AAM99054.1|AE014198_2 penicillin-binding protein 4, putative [Streptococcus agalactiae 2603V/R] gi|76562549|gb|ABA45133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909] gi|77176275|gb|EAO79045.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B] Length = 395 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 50/266 (18%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + NK P +++ N GH++ E+ D +PAS++K+ T Y++F L + K L T +T Sbjct: 40 VKDINK-PKASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVT 98 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 ++ Y SN+ G + + + V S+N + IA L + F++ Sbjct: 99 ATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIK 158 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDF 181 +N T+K LG++ THF N G V +G Y TTARD++IL++ + Sbjct: 159 RINETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKY 218 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-------------------FLGADGMKTGFTC 222 P ++Y KYP VGT G DG+KTG + Sbjct: 219 PDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 ++ FN + +A + + LI V+LG D Sbjct: 269 SAAFNALVTAKRQNTRLITVVLGVGD 294 >gi|228997557|ref|ZP_04157170.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228762185|gb|EEM11118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 329 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + ++ + D P++ ASL+K+MT Y+V +++ K + IS ++ + + Sbjct: 33 LIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQMEGN 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 N +T+ + +++ S N AV +AE + K E+ F MN + LGLS T+ Sbjct: 93 NIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKNEQDFTNLMNEKATQLGLSNKTY 152 Query: 152 FMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV 207 F NA GV+ Q TA D + L+ + TD+P + Q+ + K NTN + Sbjct: 153 FANATGVINKQEESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTNKML 212 Query: 208 GT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + F G DG++T F+ +G++ ++A QG++ I++++ A N+ + L + Sbjct: 213 YSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVMKANGENSAFIEAKKLFT 272 Query: 262 MG 263 G Sbjct: 273 YG 274 >gi|229005188|ref|ZP_04162908.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228756048|gb|EEM05373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] Length = 329 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 11/242 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + ++ + D P++ ASL+K+MT Y+V +++ K + IS ++ + + Sbjct: 33 LIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQMEGN 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATH 151 N +T+ + +++ S N AV +AE + K E+ F MN + LGLS T+ Sbjct: 93 NIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKNEQDFTNLMNEKATQLGLSNKTY 152 Query: 152 FMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV 207 F NA GV+ Q TA D + L+ + TD+P + Q+ + K NTN + Sbjct: 153 FANATGVINKQEESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTNKML 212 Query: 208 GT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + F G DG++T F+ +G++ ++A QG++ I++++ A N+ + L + Sbjct: 213 YSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVMKANGENSAFIEAKKLFT 272 Query: 262 MG 263 G Sbjct: 273 YG 274 >gi|168335230|ref|ZP_02693333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Epulopiscium sp. 'N.t. morphotype B'] Length = 377 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 16/201 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA + + L +T+S NA++ PP + K+ L + L L++ Sbjct: 55 ASTTKIMTAIIAL-----ENGNLEDVVTVSANAAKAPPVDLKLKENEKQYLGDLLYSLML 109 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND AVAIAE + + ++F + M + LG T F +G+ HY+T D+A++ Sbjct: 110 QSHNDTAVAIAEHIGGSVEEFCEMMTTKANELGAVNTKFETPNGLDSEQHYSTPYDLALI 169 Query: 174 -SWRIKTDFPQYMH-----YFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCAS 224 ++ +K P+++ Y I E++G + N N + GA+G+KTGFT + Sbjct: 170 GAYALKN--PKFVEIINTPYMNIPTRELEGAGKHQLQNKNGFLHRMPGANGIKTGFTSKA 227 Query: 225 GFNIVASAIQGDQSLIAVILG 245 G+ V SA +G+ +LI V LG Sbjct: 228 GYCFVGSATKGNMTLIGVSLG 248 >gi|164686325|ref|ZP_02210355.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM 16795] gi|164601927|gb|EDQ95392.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM 16795] Length = 442 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 40/274 (14%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D TG V+ D PAS TK+ TAY+V +K L P+ I++ Sbjct: 26 YGVVIDYETGKVLGGKNIDSKVYPASTTKIWTAYLVVKNVKN----LDEPVEITE----- 76 Query: 90 PP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 PP S+ + G T+ L+ L++ S+ND AV +A+ + + + F Q MN +K Sbjct: 77 PPGVDGSSMYLEVGEIFTVRELLQGLLIHSSNDAAVVLAKYVSGSTQDFAQLMNKEAKKA 136 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--------- 196 G THF N HG+ HYTT DMA+L+ + ++ K + K Sbjct: 137 GALNTHFNNPHGLPDDNHYTTPYDMAMLARKAMSE-KVIREIVSTKSISFKQQNTATSKI 195 Query: 197 --GKKYPNTNWAVGT--------------FLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + NTN + + + DG+KTG+T +G +++SA++ D +I Sbjct: 196 NTSRYFTNTNLFLTSNDKITYRKQSIPIKYDIVDGIKTGYTDLAGRCLLSSAVKNDMRVI 255 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 A + + N S +LL GF N T + IN Sbjct: 256 AAVFKSFGTNVYVD-SRTLLDYGFENYTSKTIIN 288 >gi|148266151|ref|YP_001232857.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens Rf4] gi|146399651|gb|ABQ28284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens Rf4] Length = 286 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 12/217 (5%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + P ASLTK+MTA +V K L +T+S+ A+ S + Sbjct: 40 GKTVWARRPVRRLPQASLTKIMTAILVLERCK-----LDEVVTVSRRAAGETGSRIGLRV 94 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G L++ L ++V SAND A+A+ L +E++FV MN ++ LGL + F NA G Sbjct: 95 GERFRLEDLLAAMLVASANDACHALADHLAGSEERFVALMNARARGLGLDNSRFANACGH 154 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLG 212 HY+TARD+AIL+ + P + K L+I + N N +G +G Sbjct: 155 DAPNHYSTARDLAILAETALKN-PAFGRLVSSKRLKIRTVDRRRAFSLVNRNKLLGRSVG 213 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 G+KTG+T +G +VA A + ++ V+L A R Sbjct: 214 VSGVKTGYTENAGRCLVALAERDGTRVLLVLLNAPHR 250 >gi|319744056|gb|EFV96433.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae ATCC 13813] Length = 395 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 50/266 (18%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + NK P +++ N GH++ E+ D +PAS++K+ T Y++F L + K L T +T Sbjct: 40 VKDINK-PKASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVT 98 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 ++ Y SN+ G + + + V S+N + IA L + F++ Sbjct: 99 ATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIK 158 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDF 181 +N T+K LG++ THF N G V +G Y TTARD++IL++ + Sbjct: 159 RINETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKY 218 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-------------------FLGADGMKTGFTC 222 P ++Y KYP VGT G DG+KTG + Sbjct: 219 PDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 ++ FN + +A + + LI V+LG D Sbjct: 269 SAAFNALVTAKRQNTRLITVVLGVGD 294 >gi|228990579|ref|ZP_04150544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228769105|gb|EEM17703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 373 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 12/251 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKL 59 R ++VI + M +++ P + A+ N + + L++ ++G V+ AS+TK+ Sbjct: 3 RTWIVIALIIMCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKI 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA L + + + IS A S + G + L++ + L+++S ND Sbjct: 63 MTA-----LLAAESGKMKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDA 117 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIK 178 A AIAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R Sbjct: 118 AQAIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-RYA 176 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + F K + K YP N + A G KTGFT +G +V +A + Sbjct: 177 MGNETFRKIFGTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKD 236 Query: 236 DQSLIAVILGA 246 LI V L A Sbjct: 237 GLDLIVVTLNA 247 >gi|326940194|gb|AEA16090.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 437 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 46 LIEANSGKILYKKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H TT ARD AIL+ R+ DFP+ + +I K Sbjct: 166 DYKFVNSTGLTNNDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKT 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G + + LI+V++ Sbjct: 226 FQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 286 AKSHTARFDETKKLYDYGFAN 306 >gi|324326527|gb|ADY21787.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 338 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D+N+ VI + + P A+L+KLMT Y+V L E K L + IS +E Sbjct: 40 LIDSNSSEVIYKKNEEIPIQSATLSKLMTEYIVMEKLNEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P +T K +T+ + L L + N A+A+AE + E F MN +K L LS Sbjct: 100 PIQATSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA D+A L+ ++ TDFP ++ ++ + K NTN Sbjct: 158 SPFLNATGMNNDTNKQSTTTAIDVAKLATQLVTDFPDVLNITKLTSYQFTFNDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F ++ V +A +GD LI+VIL + + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFLINGNYSFVGTAKRGDTRLISVILDSNEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|119953389|ref|YP_945598.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135] gi|119862160|gb|AAX17928.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135] Length = 312 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 33/298 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFL---SIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNP 53 M+ VI+ + +LS++F L + E K+ L+D +T ++ P + P Sbjct: 1 MKIIPVILNILILSSVFGELFSIDLLEIKKVTEDAKSVVLIDYDTKCILYSKNPGLVFPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTF---KKGSTMTLDNALK 109 ASLTKL+T Y ++K L T + IS AS Y P +S+ ++G + + LK Sbjct: 61 ASLTKLVTIYTALVEARKKNIDLKTTVPISSAASYYNLPLDSSLMFLEEGHKVNFEELLK 120 Query: 110 LLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 LI+ S ND A+AIAE + K FV MN NLGL F++ G + TA Sbjct: 121 GLIISSGNDAAIAIAEFIVGKNLSDFVDLMNINVLNLGLINMSFVDTSGY-SSDNKITAL 179 Query: 169 DMAILSWRIKTDF--------------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 +MA+ + +F P+ + L++ K N N + + AD Sbjct: 180 EMALFARTYIEEFEFILDIHSLKDFIYPRSENLGNTSSLKMLNFKQKNKNVLIFNYPYAD 239 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGFYN 266 G+KTG+ SG N+VA+A + D LIAV+LG + R ++ L GF N Sbjct: 240 GLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNKGVDNVGERKRALIAQKLFEYGFGN 297 >gi|257417256|ref|ZP_05594250.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis AR01/DG] gi|257159084|gb|EEU89044.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ARO1/DG] Length = 475 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 46 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 106 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 165 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 166 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPKILEITNKPV 225 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ QG Sbjct: 226 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQG 277 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 278 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 320 >gi|218462487|ref|ZP_03502578.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli Kim 5] Length = 494 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 23/221 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+V+ D PASLTK+MT Y+VF L++ + L TP+ S +A+ P+ Sbjct: 51 VVDAKTGNVLYSENADRLQYPASLTKMMTLYLVFEALEQGRIRLDTPVPFSAHAAAQAPT 110 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T+T++ + L+ SAND + A+ E L + + A H Sbjct: 111 KLGVRAGGTITVEQGILGLVTLSANDASTALGEMLARQRGSLRPADDCQGTRPRHDAHHL 170 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 +HG A L ++ FPQY YF + Sbjct: 171 SQRPRSAEHGADDDGARPARLGIALRQHFPQYYGYFSTRAF------------------- 211 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 KTG+T A+GFN+V+S +S+++V+LG R+ Sbjct: 212 ----KTGYTRAAGFNLVSSVQVDGKSIVSVVLGGTSGAARD 248 >gi|303239548|ref|ZP_07326074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio cellulolyticus CD2] gi|302592926|gb|EFL62648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio cellulolyticus CD2] Length = 416 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 12/269 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FLV+I + +++ I F +++E ++ + L+++ G V+ E + +S K+MT Sbjct: 12 FLVLIIIVLINGISVF-AVSEAPEIKGVSAILVESKRGQVLFEKESKSRLHISSANKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A + L++ + + TP+TISKNA+ S + G ++ + + +I+ SAND A Sbjct: 71 ALLA---LEKVGSKIDTPVTISKNAAAAQGSILNLEVGGKYSIQDLVYTVILTSANDSAT 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + + FV MN+ ++ L ++ T+F N G+ YTTA D+A+L+ R Sbjct: 128 ALAEYVGGDFQSFVNIMNDKARELKMTDTNFTNPTGLYDEAQYTTAYDLAVLT-RFALSN 186 Query: 182 PQYMHYF--QIKGLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P + H F Q K +GK N+N ++ G DG KTG+ + +A + + Sbjct: 187 PYFEHMFSSQAKLWTNQGKVEVITNSNNLFWSYNGIDGGKTGYNEVERQTAITTATRDNL 246 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266 +I+++L + +++ + S LL GF N Sbjct: 247 RVISIVLDSPEKSVYDD-STKLLDYGFNN 274 >gi|320120306|gb|EFE28569.2| serine-type D-Ala-D-Ala carboxypeptidase [Filifactor alocis ATCC 35896] Length = 443 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 40/266 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG ++ E D P PAS TK+MTA + L L IT+ ++ S Sbjct: 46 LIEEETGKILYEKQKDVPVYPASTTKIMTALLTLEHLD-----LNQKITVPEDMGPADGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T T++ L+ L+VKSAND A+ +A+++ + ++F MN ++ +G THF Sbjct: 101 AMYLLPGETFTVEELLQGLLVKSANDAAILLAKNISGSVEEFSNLMNQRAQEIGCQNTHF 160 Query: 153 MNAHGVVQHGHYTTARDMAILSWR----------IKTDFPQYMHYFQIKGLEIKGKKYPN 202 +N +G+ H T+A D+A+++ + TDF Q Q + + + N Sbjct: 161 VNPNGLHDPNHTTSAYDLALIAREAMKNPKFRELVSTDFVQIHATEQTPEI----RYFRN 216 Query: 203 TN---WAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 TN W+ T + DG+KTG+T +G +V+S + LIAV++ Sbjct: 217 TNKFLWSKQTIDYKGISTPIKYDVIDGIKTGYTPEAGKCLVSSGEKNGIRLIAVVM---- 272 Query: 249 RNTRNKVSAS---LLSMGFYNKTDRK 271 +N +V A+ LL GF N T +K Sbjct: 273 KNQGLEVYANSRKLLDYGFQNFTKKK 298 >gi|182416870|ref|ZP_02948256.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237667877|ref|ZP_04527861.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379332|gb|EDT76831.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237656225|gb|EEP53781.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 300 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 11/227 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD + V+ E AS TK++T S + ++ L P+TISK AS S Sbjct: 57 LDKESHQVLYEQNAYEIVPMASTTKILT-----SLIAIEQDDLNAPVTISKKASSIRGSK 111 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K+ +TL + L+ KS ND A+AIAE + + + F + MN+ ++ +G+ +HF Sbjct: 112 VGYKENEVITLKELIFGLMFKSGNDAAIAIAEHIGGSVEGFAEIMNHYARGIGILDSHFE 171 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGT 209 + HG+ HY++A D+A+L+ + D+ + K + + Y N N + Sbjct: 172 SPHGLDSSQHYSSAYDLALLTCK-GMDYDLFREVVGSKSISKDKYNFTRDYNNINKILWK 230 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKV 255 GA+G+KTG+T +G +V+S ++ +I V+L DR N +K+ Sbjct: 231 IPGANGVKTGYTGQAGKCLVSSVNNNNKDIIIVVLNCPDRWNVTDKI 277 >gi|253580937|ref|ZP_04858199.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847779|gb|EES75747.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 411 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 34/234 (14%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALK 109 PAS+TK+MTA + +L + IT+S+ A+ E S+ + G T++ AL Sbjct: 92 PASITKIMTALLACEYLN-----MDDTITMSQEAAYGIEAGSSSIYAETGEVFTVEQALM 146 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++SAN++A+A+AE + KKFV+ MN + LG THF N +G+ HYTTA D Sbjct: 147 ALMLESANEMALALAEKTSGSVKKFVELMNQRAAQLGCKNTHFNNPNGLPDETHYTTAGD 206 Query: 170 M---AILSWRIKTDFPQYMHYFQIKGLEIKG--------------KKYPNTNWAVGTFLG 212 M A +W P++ + + EI K P ++A LG Sbjct: 207 MMKIAKAAWY----NPRFRKFVTTQVYEIPPTNKQSETRYLLNHHKMMPGQSYAYDGVLG 262 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG+T A+G +V A +G+ LIAV+L + N + SLL GF N Sbjct: 263 G---KTGYTDAAGSTLVTYAKRGNSILIAVVLNS--TNGAFPDTTSLLDYGFDN 311 >gi|302871943|ref|YP_003840579.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor obsidiansis OB47] gi|302574802|gb|ADL42593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor obsidiansis OB47] Length = 451 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 39/264 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E P+ PAS TK++TA V S+ + L +S A+ P Sbjct: 48 LVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ + +FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKTDF----PQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P++ + Sbjct: 164 HFVNPNGLHSPEHYTTAYDLSLIARQAYQNEMLRKIFSTVEYRITTASMHKKPEWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 I L K KY + A G+KTG+T + ++ASA + D LIA+IL + D Sbjct: 224 INKLLRKNSKY--------YYPYATGIKTGYTAQAKRCLIASAKKDDIELIAIILFSEDA 275 Query: 250 NTRNKVSASLLSMGFYNKTDRKKI 273 + + L + GF N R+K+ Sbjct: 276 FSD---AIKLFNYGF-NNFKREKL 295 >gi|194016923|ref|ZP_03055536.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 5*) (PBP-5*) [Bacillus pumilus ATCC 7061] gi|194011529|gb|EDW21098.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 5*) (PBP-5*) [Bacillus pumilus ATCC 7061] Length = 383 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 16/223 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ AS+TK+MTA + K K + +SK A + S Sbjct: 39 LIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGKMKDT-----VKVSKRAIQAEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K+G ++L++ L+++S ND AVAIAE + + + F+ MN + LG+ T+F Sbjct: 94 SIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGMENTNF 153 Query: 153 MNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWA 206 N HG+ H HY++A DMAIL+ + + QY +++ K +E + N N Sbjct: 154 QNPHGLDDHKHHYSSAYDMAILT-KYAMEHKQYQKIAGTTFYKAKTME---GYWKNKNKL 209 Query: 207 V-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 V G + + G KTG+T + +V++A +GD +LIAV + A D Sbjct: 210 VTGLYKYSTGGKTGYTKLAKRTLVSTAAKGDAALIAVTINAPD 252 >gi|332654087|ref|ZP_08419831.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332517173|gb|EGJ46778.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 453 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPASLTKL 59 LV++ M + + PF S+A + P + L+D N V+ E PAS+TK+ Sbjct: 9 LVLVVSIMTTLLLPFQSLAL--EPPEFHGKNAILVDANYDEVLYEVGGHDKVYPASITKV 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSAN 117 MTA + ++ K T +T S A+ P +ST K G +T++ L L++ SAN Sbjct: 67 MTALLTLEAIESGKLTAQTQVTASATAATIPEGSSTANIKAGEVLTVEQLLYCLLLPSAN 126 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-LSWR 176 + A +AE++ FV MN+ +K LG THF N HG HYTT D+ + + Sbjct: 127 EAAQILAETVGGDIDTFVGMMNDKAKELGCENTHFANPHGFHDPDHYTTPYDITLFMKAA 186 Query: 177 IKTDFPQYM---HYFQIKGLEIKGKKYPN------TNWAVGTFL--GADGMKTGFTCASG 225 ++ D Q + + I + ++ +NW +L G KTG T +G Sbjct: 187 MEYDLFQKIVTSPNYTIPATNLSEQRTVRNTNALTSNWTYTGYLYTPGTGGKTGSTDEAG 246 Query: 226 FNIVASAIQGDQSLIAVILGALDRNT 251 +V +A +GD LI+V++G ++ T Sbjct: 247 KCLVETAKKGDTYLISVVMGEPEKVT 272 >gi|229030238|ref|ZP_04186295.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228731082|gb|EEL82007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 338 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + P A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDANSGEVVYKKNEEIPIQSATLSKLMTEYIAMEQLNEGKIQLDELVKISNEVFRAEKS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN + L LS Sbjct: 100 PIQVTSKDQTTVR--DLLHALFLTGNNRSALALAEHIAGNEGNFTLLMNENATQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA D+A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKQSTTTAIDVAKLATQLVTDFPDVLNITKLTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL + + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAHRGDTRLISVILDSSEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|77409047|ref|ZP_00785765.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1] gi|77172341|gb|EAO75492.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1] Length = 395 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 50/266 (18%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + NK P +++ N GH++ E+ D +PAS++K+ T Y++F L + K L T +T Sbjct: 40 VKDINK-PKASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTNLNTTVT 98 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 ++ Y SN+ G + + + V S+N + IA L + F++ Sbjct: 99 ATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIK 158 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDF 181 +N T+K LG++ THF N G V +G Y TTARD++IL++ + Sbjct: 159 RINETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKY 218 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-------------------FLGADGMKTGFTC 222 P ++Y KYP VGT G DG+KTG + Sbjct: 219 PDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 ++ FN + +A + + LI V+LG D Sbjct: 269 SAAFNALVTAKRQNTRLITVVLGVGD 294 >gi|289806971|ref|ZP_06537600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 177 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 85/146 (58%), Gaps = 6/146 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 32 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATG 91 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P + K G +++ + K +I++S ND +A+A+ + +++ F+ MN +K Sbjct: 92 NPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKR 151 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDM 170 LGL+ T F HG+ G ++TARDM Sbjct: 152 LGLTNTTFQTVHGLDAPGQFSTARDM 177 >gi|291561741|emb|CBL40540.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 514 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 31/254 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+G V+ E P+ PAS+TK++TA +V + L +T S A Sbjct: 42 LMDINSGAVLFEKNSHEPYYPASITKILTALIVI-----ENCGLDETVTFSNTAVNSLEP 96 Query: 93 NSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 NS+ + G T+++ + L L+++SAN++A A+AE + F + MN + LG + Sbjct: 97 NSSILGARAGDTLSVRDCLYALLLQSANEVANALAEHCAGSIDAFAEKMNEKTAELGCTD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTN 204 +HF N G+ HY +A DMA+++ + + P ++ Y+ + ++ K+YP+ Sbjct: 157 SHFANPSGLNDPNHYVSAYDMALIA-KAAFNNPTFVEVDSTTYYDVPAGKL--KQYPD-G 212 Query: 205 WAVGT------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + GA G KTG+T +G +V A + LIAV+L T Sbjct: 213 WRYYAHHRMLRRNDSLYYDGAIGGKTGYTLLAGNTLVTCAERDGMKLIAVVLNG--HQTH 270 Query: 253 NKVSASLLSMGFYN 266 + +L GF N Sbjct: 271 YSDTKALFDYGFKN 284 >gi|298251261|ref|ZP_06975064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297545853|gb|EFH79721.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 338 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 18/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLDT+TG+V+ + + P AS TK+MTA VV K+ + +P I + ++ S Sbjct: 85 LLDTDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKQEVTVSP-DIPQYVFQHNGS 143 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N+ G T+T+++ L L++ S +D A+ +A ++ + FV MN + L THF Sbjct: 144 NAKLVPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSDAFVGMMNCFALRHHLFQTHF 203 Query: 153 MNAHGVVQH--------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GK 198 +N G+ + GHY++ARD+A L+ ++ P + + ++ Sbjct: 204 INPDGLTYYDANGKPLPGHYSSARDLARLTAYALSN-PLFAKIVGTRQYDLAWSPKHGAY 262 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--RNKVS 256 + NTN + G+KTGFT +G+ +V SA + L+ +L + D +T R + + Sbjct: 263 HWTNTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHHLVGTVLFSSDTDTNQRFRDA 322 Query: 257 ASLLSMGF 264 +LL GF Sbjct: 323 KTLLEWGF 330 >gi|194334807|ref|YP_002016667.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris aestuarii DSM 271] gi|194312625|gb|ACF47020.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris aestuarii DSM 271] Length = 317 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 24/252 (9%) Query: 17 FPFLSIAETNK----------LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 FP SIAE + + Y L D V+ E P PASLTK++T + Sbjct: 30 FPVPSIAEPHAKDSLKVEPLDIASYILKDIGRSTVLLEKDPGTRHEPASLTKILTCIIAI 89 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + A L +TI A++ P+ + F G + L + +K +VKS+ND A AIA Sbjct: 90 -----ESARLNEFVTIPLEATQVEPTKAGFLPGEKIRLLDLVKAAMVKSSNDAAFAIAIH 144 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARDMAILS-WRIKTDFP 182 L + + F MN + LGLS + F N G +H GHY+TA DM L+ + I Sbjct: 145 LGGSVQGFAAMMNAKAAELGLSHSCFTNPAGFDRHQYVGHYSTAGDMLRLTEYAIGNQIF 204 Query: 183 QYMHYFQIKGLEIK--GKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 Y+ + K GK Y +N + + A G+KTG+T +G ++A A +GD+ Sbjct: 205 NYIAGLDEVSITEKRSGKIYRLKTSNKLLHRYPYAVGIKTGYTFRAGKCLIARAKKGDRD 264 Query: 239 LIAVILGA-LDR 249 ++ V+L A LDR Sbjct: 265 VVLVMLNARLDR 276 >gi|152973863|ref|YP_001373380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022615|gb|ABS20385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 439 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 28/268 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ + D AS+TK+M+ Y+V + K I +S+ A + Sbjct: 46 LVEADSGKILYQKNADELLAIASMTKMMSEYLVHKAVDTGKLKWDQKIKVSEYAHKISQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ +K GL Sbjct: 106 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLK 165 Query: 149 ATHFMNAHGVV------QHGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ QH TT ARD+AIL+ + DFP+ + +I K + Sbjct: 166 NYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIQDFPKVLDTAKIPKKV 225 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW + + G DG+KTG T +G +A + LI+V++ Sbjct: 226 FQEGGKYPVKMDNWNWMLKGLIKQYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIK 285 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 R + L GF N D KK+ Sbjct: 286 TNSHTARFDETKKLFDYGFTN-FDVKKV 312 >gi|228995406|ref|ZP_04155077.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] gi|228764332|gb|EEM13208.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] Length = 444 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ + D AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 51 LVEADSGKILYQKNADELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ +K LGL Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLK 170 Query: 149 ATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H + +ARD AIL+ + DFP+ + +I K + Sbjct: 171 NYKFVNSTGLTNHDLKGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKV 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G +A + LI+V++ Sbjct: 231 FQEGGKYPVKMDNWNWMLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 291 TNSHTARFDETKKLFDYGFTN 311 >gi|229003020|ref|ZP_04160878.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] gi|228758220|gb|EEM07407.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] Length = 444 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ + D AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 51 LVEADSGKILYQKNADELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ +K LGL Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLK 170 Query: 149 ATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H + +ARD AIL+ + DFP+ + +I K + Sbjct: 171 NYKFVNSTGLTNHDLKGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKV 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G +A + LI+V++ Sbjct: 231 FQEGGKYPVKMDNWNWMLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 291 TNSHTARFDETKKLFDYGFTN 311 >gi|56418545|ref|YP_145863.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261417510|ref|YP_003251192.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|319765168|ref|YP_004130669.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] gi|461913|sp|Q05523|DACA_BACST RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=CPase; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|580849|emb|CAA48577.1| D-alanine carboxypeptidase [Geobacillus stearothermophilus] gi|56378387|dbj|BAD74295.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261373967|gb|ACX76710.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|317110034|gb|ADU92526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] Length = 452 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 33/265 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA----MLTTPITISKNASE 88 L+D TG ++ E D AS+TK+MT Y++ +K K+ M T + + + + Sbjct: 44 LVDAQTGRILYEKNIDTVLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQD 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +K T+ + + + SAN VAIAE + +EK FV+ MN+ +K LGL Sbjct: 104 RALSNVPLRKDGKYTVRELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLK 163 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ + +AR MA+L++R+ D P+ + I Sbjct: 164 DYKFVNATGLSNKDLKGFHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKV 223 Query: 195 IKGK-----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K N NW V + G DG+KTG+T +G +A + LI+V++ Sbjct: 224 FREGTKDEIKMDNWNWMLPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMN 283 Query: 246 ALD------RNTRNKVSASLLSMGF 264 A D + R K + L + GF Sbjct: 284 AKDASGKTTKEARFKETEKLFNYGF 308 >gi|228989223|ref|ZP_04149217.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] gi|228770498|gb|EEM19068.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] Length = 444 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ ++G ++ + D AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 51 LVEADSGKILYQKNADELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ +K LGL Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLK 170 Query: 149 ATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H + +ARD AIL+ + DFP+ + +I K + Sbjct: 171 NYKFVNSTGLTNHDLKGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKV 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G +A + LI+V++ Sbjct: 231 FQEGGKYPVKMDNWNWMLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 291 TNSHTARFDETKKLFDYGFTN 311 >gi|301054094|ref|YP_003792305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|300376263|gb|ADK05167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 327 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + A+L+KLMT Y+V L + L + IS +E Sbjct: 29 LIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 88 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 89 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 146 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 147 SPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 206 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +GD LI+VIL A N+ + Sbjct: 207 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADSENSTFIETKK 266 Query: 259 LLSMGF 264 LL GF Sbjct: 267 LLQYGF 272 >gi|118477954|ref|YP_895105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|118417179|gb|ABK85598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] Length = 338 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 151 H-FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 FPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|297528386|ref|YP_003669661.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] gi|297251638|gb|ADI25084.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] Length = 452 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 33/265 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA----MLTTPITISKNASE 88 L+D TG ++ E D AS+TK+MT Y++ +K K+ M T + + + + Sbjct: 44 LVDAQTGRILYEKNIDTVLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQD 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +K T+ + + + SAN VAIAE + +EK FV+ MN+ +K LGL Sbjct: 104 RALSNVPLRKDGKYTVRELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLK 163 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ + +AR MA+L++R+ D P+ + I Sbjct: 164 DYKFVNATGLSNKDLKGFHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKV 223 Query: 195 IKGK-----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K N NW V + G DG+KTG+T +G +A + LI+V++ Sbjct: 224 FREGTKDEIKMDNWNWMLPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMN 283 Query: 246 ALD------RNTRNKVSASLLSMGF 264 A D + R K + L + GF Sbjct: 284 AKDASGKTTKEARFKETEKLFNYGF 308 >gi|237749357|ref|ZP_04579837.1| penicillin-binding protein 6. serine peptidase. merops family s11 [Oxalobacter formigenes OXCC13] gi|229380719|gb|EEO30810.1| penicillin-binding protein 6. serine peptidase. merops family s11 [Oxalobacter formigenes OXCC13] Length = 397 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 12/244 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASE 88 + L+D + V+A + + +LMTAY+VF +K+ K L +++S A E Sbjct: 51 WLLIDVVSNQVLASSNSQERIRAGTPARLMTAYLVFGAIKDGKLNLDKTVSVSDEIGAME 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + GS++T+ L LIV+ + D A+ +A ++ EK FV MN + LG+ Sbjct: 111 SGGPRMFLQPGSSVTIQQLLDGLIVQGSEDAALTLALAVSGDEKSFVDLMNREAVRLGMK 170 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +T+F + + Y+T D+++L+ + D+P Y F + N N Sbjct: 171 STNFTHPYETADKDSYSTPNDLSVLAVNLMRDYPDYYSGFSTREFTYNKITQRNPN---- 226 Query: 209 TFLGADGMKTGFTCASGF--NIVASA----IQGDQSLIAVILGALDRNTRNKVSASLLSM 262 L D G ++G ++V SA I G++ +++V++GA+ R + S LL+ Sbjct: 227 RLLWVDPTVDGLVASAGVRDSMVVSARRDSILGERRMLSVVVGAVSDQARAQESLKLLNW 286 Query: 263 GFYN 266 GF N Sbjct: 287 GFQN 290 >gi|225174843|ref|ZP_03728840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169483|gb|EEG78280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 371 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 12/220 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG ++ AS TK+MTA L + L +T+S+ AS S Sbjct: 35 LLDQETGRILFSKNAHERLPMASTTKIMTA-----ILAIESGRLDEMVTVSEYASLVEGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G TL+ L L+++S ND A AIAE L + +KF + M + LG + T F Sbjct: 90 GVDLDAGEQKTLEELLYGLMLRSGNDAATAIAEHLAGSVEKFARQMTRRAGELGAAQTRF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYP----NTNWA 206 N HG+ HYTTA D+ I++ P++ K + G+ Y N N Sbjct: 150 ENPHGLEAENHYTTAYDLGIIA-VYAMSLPEFREVVATSEKRISWTGRPYDRILYNQNKL 208 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + ADG+KTG+T +G V S+ + L++V+L A Sbjct: 209 LDMYEYADGIKTGWTTPAGRCFVGSSNKDGWGLVSVVLNA 248 >gi|154483906|ref|ZP_02026354.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC 27560] gi|149735397|gb|EDM51283.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC 27560] Length = 494 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + + PAS+TK+MTA + K + + + TI ++ +Y + Sbjct: 61 LIEASTGTVLYDKKCNKKMYPASITKIMTALLTIENCKMDEMVTFSDATI--HSIQYGDA 118 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N G MT+ + L L+++SAN++A A+ E + + K F + MN +K G THF Sbjct: 119 NMGCSVGEKMTVKDCLYALMLQSANEVATALGEHIAGSTKNFAEMMNKRAKEAGALNTHF 178 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-------- 204 NA+G+ HY TA DMA+++ R + + + IK T+ Sbjct: 179 ANANGLHDPNHYVTAYDMAMIT-RAASKYSVFNDIVNTTTYTIKHNNKRKTDATAIQRHK 237 Query: 205 --WAVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W + G G KTGFT SG +V A + +LIAV+L + N K + LL Sbjct: 238 MVWPTSGYYYDGIIGGKTGFTDQSGTTLVTYAKRNGMTLIAVVLHSNGTNVY-KDTKELL 296 Query: 261 SMGFYN 266 GF N Sbjct: 297 DYGFNN 302 >gi|23097466|ref|NP_690932.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22775689|dbj|BAC11967.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis HTE831] Length = 447 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 135/298 (45%), Gaps = 39/298 (13%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKL 59 L + ++ + +++ + + N+L + L+D TG V+ PD PAS+TK+ Sbjct: 10 LLAVASILVFTSMLTATTTVQANELDLESESAILVDGETGKVLYAKNPDVALPPASMTKM 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTF-----KKGSTMTLDNALKLL 111 MT Y+V+ ++ T IS +YP S N++F ++ T+ + + Sbjct: 70 MTEYLVWEAIENGDITWDTTTEIS----DYPYSISANNSFSGVGLRQQQEYTVKELYEAM 125 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------- 162 + S N +A+AE + +E +FV+ MN + +GL F+N+ G+ Sbjct: 126 AINSDNATTIALAELIAGSESEFVKMMNEKGEEMGLQEFKFVNSTGLDNEDLGDNYPEGT 185 Query: 163 -----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW---------AVG 208 + +AR A+L + + D+ + + I + G+ N N+ A Sbjct: 186 NPNDTNLLSARSAALLGYHLVNDYEEALEISSIPQTDFGGQTINNWNYMLPHEGDNLASY 245 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTGFT +G++ +A + Q LI V++ R + +A LL GF N Sbjct: 246 YYEGVDGLKTGFTDLAGYSFTGTAERNGQRLITVVMKTGSETERFEETAKLLDYGFSN 303 >gi|187778439|ref|ZP_02994912.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC 15579] gi|187772064|gb|EDU35866.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC 15579] Length = 418 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLADGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG ++T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTSTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENR 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + LI ++ ++N + + L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRLIVALVHDKEKNFFDD-AVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|159184785|ref|NP_354505.2| penicillin binding protein [Agrobacterium tumefaciens str. C58] gi|159140073|gb|AAK87290.2| penicillin binding protein [Agrobacterium tumefaciens str. C58] Length = 390 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 10/256 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 S PF++ AE ++D TG V+ D + PASL KLMT VV L + + Sbjct: 28 SQTAPFIAKAEQ-----AYMIDAETGTVLLSQNEDQSFPPASLAKLMTVEVVLDALSKGQ 82 Query: 74 AMLTTPITISKNA---SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLC 128 T +S+ A P ST S++ +++ L +IV++AND + +AE + Sbjct: 83 VTPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVGINDLLTGIIVQNANDGCIIVAEGMA 142 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 ++ F + M + LG++ + F N+ G+ G+ TTARDM L+ + +P F Sbjct: 143 GSDAAFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARDMVRLAQHLHDTYPDRYALF 202 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 E N N + G DG+ GF SGF V SA + + + + G D Sbjct: 203 TKPDFEWNRIFQRNKNTLLMPGSGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALAGIAD 262 Query: 249 RNTRNKVSASLLSMGF 264 TR + + ++ G Sbjct: 263 DKTRQEEARRVVDWGL 278 >gi|260583975|ref|ZP_05851723.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] gi|260158601|gb|EEW93669.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] Length = 464 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 137/286 (47%), Gaps = 45/286 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++ ++ D +PAS++K++T Y+V +++ + L+ IT +K ++ Sbjct: 73 VVDAYTGRILWQDNIDEERDPASISKVLTVYLVMEAIQKGELSLSQKITATKEDEAISNI 132 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ +G ++ +K+ +V S+N + +A +L K F+ MN +K LG++ Sbjct: 133 YAISNNKIIEGVEYPIEELIKMTLVPSSNAATIMLANTLDKDSAAFIGKMNAKAKELGMN 192 Query: 149 ATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQ---I 190 T F NA G V G+Y TTARD+AIL+ + +PQ + Y + Sbjct: 193 HTTFNNASGAVAELFQGYYQPEGYDASKPNQTTARDLAILAMDLMNHYPQVLQYTNSAVV 252 Query: 191 KGLEIKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 K +E G Y P + + G +G+KTG + FN +A+ + L Sbjct: 253 KTME--GTPYEEKFDTYNYSLPGAKYGIE---GVNGLKTGSSGYGAFNYIATYEKDQMKL 307 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + V+LG D + + ++ F N +NY+++ F Q + Sbjct: 308 VEVVLGVGDWYNQ---AGEMIRHTFGNAI----LNYVLEHFSFQTI 346 >gi|213028272|ref|ZP_03342719.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 239 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDMA+ Sbjct: 2 LQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 61 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIV 229 + + D P ++ K G + N N W L DG+KTG T +G+N+V Sbjct: 62 IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWD--NSLNVDGIKTGHTSKAGYNLV 119 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ASA +G LI+ ++G R S LL+ GF Sbjct: 120 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 154 >gi|282883288|ref|ZP_06291884.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus lacrimalis 315-B] gi|281296856|gb|EFA89356.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus lacrimalis 315-B] Length = 446 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 13/249 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G ++ D AS +KL++ +VVF +K+ + +TI + +S Sbjct: 86 YLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSLLG 145 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+ MT+D+ +K +V S ND A+A+ + + + F MN K+LGL Sbjct: 146 GSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKNA 205 Query: 151 HFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 H +N G+ + + T R+M ILS + +P+ ++Y + L+ + + + NTN Sbjct: 206 HMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNTN 265 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVAS----AIQG---DQSLIAVILGALDRNTRNKVSA 257 +G DG+KTG+T ASG ++++ I+G D L+ ++ G R Sbjct: 266 PILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYVAIK 325 Query: 258 SLLSMGFYN 266 L+S GF N Sbjct: 326 RLMSKGFDN 334 >gi|300814763|ref|ZP_07095011.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511150|gb|EFK38402.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 446 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 123/249 (49%), Gaps = 13/249 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G ++ D AS +KL++ +VVF +K+ + +TI + +S Sbjct: 86 YLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSILG 145 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+ MT+D+ +K +V S ND A+A+ + + + F MN K+LGL Sbjct: 146 GSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKNA 205 Query: 151 HFMNAHGV----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 H +N G+ ++ + T R+M ILS + +P+ ++Y + L+ + + + NTN Sbjct: 206 HMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNTN 265 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVAS----AIQG---DQSLIAVILGALDRNTRNKVSA 257 +G DG+KTG+T ASG ++++ I+G D L+ ++ G R Sbjct: 266 PILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYVAIK 325 Query: 258 SLLSMGFYN 266 L+S GF N Sbjct: 326 RLMSKGFDN 334 >gi|153953884|ref|YP_001394649.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium kluyveri DSM 555] gi|219854499|ref|YP_002471621.1| hypothetical protein CKR_1156 [Clostridium kluyveri NBRC 12016] gi|146346765|gb|EDK33301.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium kluyveri DSM 555] gi|219568223|dbj|BAH06207.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 398 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD+N+ V+ E AS TK+MTA V + L I IS A+ S Sbjct: 48 LDSNSKVVVYEKNAYELVPMASTTKIMTALVAMKY-----GDLNKKIDISPKAASVRGST 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +KKG ++ L L L+++S ND A+AIAE + + ++F + MN + LG+ T F Sbjct: 103 VGYKKGESILLKELLFGLMLRSGNDAAIAIAEGISGSVEEFAKLMNEYAGELGVINTQFQ 162 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIK-GKKYPNTNWAVGTF 210 HG+ GHY+TA D+A+++ K + F + + + G + K + Y N N + Sbjct: 163 TPHGLDSEGHYSTAYDLALVTSAAKKEPLFNEIVSSKDVDGEKNKFSRSYHNINKILWQI 222 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 A+G+KTG+T +G +V S +I V+L + R Sbjct: 223 PEANGVKTGYTGKAGKCLVTSVAIEKNDIIIVVLNSPGR 261 >gi|304316798|ref|YP_003851943.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778300|gb|ADL68859.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 384 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 19/223 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ E + AS TK+MT + + L +T+SK A+ S Sbjct: 37 VMDQKSGRILYEKNINEKLPMASTTKIMTLLLALEY-----GNLNDIVTVSKRAASVGGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G ++L + L L++ S ND A AIAE + + +KF + MN +K++G +T+F Sbjct: 92 SIWLAPGEKLSLIDLLYGLMLNSGNDAATAIAEHIGGSVEKFAEMMNKKAKDIGAYSTNF 151 Query: 153 MNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYP---- 201 + G + + HYTTA D+A+++ + F Y + +I K + G+ Y Sbjct: 152 VTPSGLDIGINNHYTTAYDLALIT---RYAFNNYSKFAEIVSTKEKTIPWSGRDYDRYLR 208 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N N + + G DG+KTGFT +G +VASA + LI+V+L Sbjct: 209 NKNKMLWQYEGGDGVKTGFTNKAGRCLVASATRDGHRLISVVL 251 >gi|228939672|ref|ZP_04102254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972534|ref|ZP_04133140.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228787171|gb|EEM35144.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820010|gb|EEM66053.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940266|gb|AEA16162.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 338 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSATLSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + TE F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGTEDNFTILMNKKAKELQLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|229156148|ref|ZP_04284246.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228627331|gb|EEK84060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] Length = 338 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L++ ++G V+ + + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LINAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N A+A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTV--RDLLHTLLLTGNNRSALALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ ++ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVILDAENENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|42781590|ref|NP_978837.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|42737513|gb|AAS41445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] Length = 434 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 31/289 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V+ + + + P L + + + L++ N+G ++ E D AS+TK+M+ Y+ Sbjct: 19 IVVTSGSASAETVPVLDVEAGSAI----LVEANSGKILYEKNADESLAIASMTKMMSEYL 74 Query: 65 VFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V +++ K + IS+ A + SN + + T+ + + + SAN Sbjct: 75 VHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLENSGSYTVKELYEAMAIYSANGAT 134 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHY-----------TT 166 +A+ E + E FV+ MN+ SK G+ F+N+ G+ + GH+ + Sbjct: 135 IALVEEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPEGTTPDEKNKMS 194 Query: 167 ARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWA----VGTFLGADGMK 217 ARD AIL+ R+ DFP+ + +I K KG KYP N N + + G DG+K Sbjct: 195 ARDCAILAQRLVQDFPKMLDTAKIPKKTFQKGGKYPIDMVNFNMMLKGLIKQYEGVDGLK 254 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 TG T +G + + LI+V++ A R + L GF N Sbjct: 255 TGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 303 >gi|224475783|ref|YP_002633389.1| penicillin binding protein 4 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420390|emb|CAL27204.1| penicillin binding protein 4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 429 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 39/285 (13%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG V+ + + D W PAS+TKLMT Y+ +K K L + I+++ S P Sbjct: 55 SQTGQVLYDYHMDKKWYPASMTKLMTMYLTLEAVKAHKLSLNDKVKITEDDYRMSTLPKL 114 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ +A+ + F MN +K LG++ TH Sbjct: 115 SNTKLYPGETYTIKELLQITVSASSNAAALILAKKVSGNTSDFTDKMNKKAKELGMTKTH 174 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 ++N G + +A+D AILS R+ D P+ +++ + G Sbjct: 175 YVNPTGAENNLLQDFAPKKYKNEMSSRASAKDYAILSQRVIQDTPKILYFTKQLAPTQHG 234 Query: 198 KKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y NW++ G L G DG+KTG + + +N + + + I+GA D Sbjct: 235 VTYYTFNWSLEGAELGLKGTDGLKTGSSDIADYNHTITTKRDGFRIDQAIMGAGDFKHLG 294 Query: 249 -RNTRNKVSASLLSMGF----YNK---TDRKKIN----YIIKDFY 281 RNK+ S+++ F Y K +KIN Y+ KD Y Sbjct: 295 GEKERNKMGNSIMNRSFDQYKYVKILSKGEQKINGKKYYVKKDLY 339 >gi|255020661|ref|ZP_05292723.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254969897|gb|EET27397.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 386 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 29/249 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP---ITISKNASE 88 LLD T V+ + + + P NP+ L KLMTAY+ L+ + L P + +S A Sbjct: 47 VLLDVQTDQVLMDEHGNRPLNPSGLVKLMTAYL---LLQAEHQGLVRPDQNVQVSDRAWH 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G +T+ + L++ ND A+ IA+++ + FV MN + +GL Sbjct: 104 AQGSRMFIQPGLPVTVAQLERGLLIDGGNDAAIVIAQTVAGSVSGFVDLMNRDAAEMGLK 163 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----------YMHYFQIKGLEIKG 197 THF N G+ +TA D+A L+ + + P Y H Q + G Sbjct: 164 HTHFANPDGLPAPDQRSTALDVARLARILIENHPSVLQVAGQPKYTYNHITQYNYNPLAG 223 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 +K G +G+ G + +++ SA + +SL+AV+LGA R++ ++ Sbjct: 224 EK------------GINGLGVGLASSKHWDLAVSASRDGRSLVAVVLGAASRSSAGADAS 271 Query: 258 SLLSMGFYN 266 +LL GF+ Sbjct: 272 ALLHYGFHG 280 >gi|227822156|ref|YP_002826127.1| penicillin binding protein [Sinorhizobium fredii NGR234] gi|227341156|gb|ACP25374.1| penicillin binding protein [Sinorhizobium fredii NGR234] Length = 384 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 5/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D TG V+ D P PASL KLM VVF L++ + +S++A Sbjct: 36 LIDAETGTVLFARGEDEPVPPASLAKLMAMEVVFEALEKGELTQEAVFPVSEHAWRTGGA 95 Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST S + + + ++ V+ AND + +AE + +E F Q MN +++LG+ Sbjct: 96 PSGTSTMFAAIKSQVRVADLIQGATVQLANDACIILAEGMAGSEAAFAQRMNARARDLGM 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F NA G+ G+ T R++ LS ++ + + E N N + Sbjct: 156 PVATFKNATGLPDPGNRVTMRELVTLSRHLREAHANFYRLYAQPEFEWNKILQRNKNPLI 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +G DG+ TGF GF++ AS +GD+ + + G R + S +L N Sbjct: 216 AANVGVDGLATGFAEGFGFSLAASMQRGDRRVYLAMGGLETDKERTEESRRVLDWAMTNF 275 Query: 268 TDRK 271 R+ Sbjct: 276 EKRR 279 >gi|266618868|ref|ZP_06111806.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|263528518|gb|EEZ28341.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] Length = 415 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ + H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNNKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|225420336|ref|ZP_03762639.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme DSM 15981] gi|225041022|gb|EEG51268.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 124/262 (47%), Gaps = 44/262 (16%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 +++ TG V+ D P+ PAS+TK++TA +V + L +T S +A E Sbjct: 39 VMEAGTGTVLYGKNMDQPYYPASITKILTALIVI-----ESCDLDEIVTFSHDAVYNVEA 93 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ +G +T+ + L L++ SAN+ A A+AE + T + F MN + +LG + Sbjct: 94 DSSSAGIDEGDQLTVRDCLYALLLASANESANALAEHVSGTREAFADLMNQRAASLGCTG 153 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKY 200 +HF N G+ HYTTA DMA +I Q + +I G +K+ Sbjct: 154 SHFANPSGLNDENHYTTAHDMA----KIAQAAIQNPTFVEICGSRTYRLPNMKRAPAEKF 209 Query: 201 P------------NTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL- 244 P N N A G F G KTG+T +G +V A +GD +LIAV+L Sbjct: 210 PDGYPIANHHKMWNRNDAAYYNGAFCG----KTGYTSLAGNTLVTCAKRGDMTLIAVVLN 265 Query: 245 GALDRNTRNKVSASLLSMGFYN 266 G L T K ++L GF N Sbjct: 266 GHLTHYTDTK---AMLDFGFGN 284 >gi|312862810|ref|ZP_07723050.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] gi|322516764|ref|ZP_08069670.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] gi|311101670|gb|EFQ59873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] gi|322124686|gb|EFX96138.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] Length = 448 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 29/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 L+D TG V+ E D +PAS++K MT Y+VF + + + T IT + A Sbjct: 49 LIDGTTGDVLWEENADEIRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIADI 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 Y SN+ G T+ + + V S+N V +A L K++ MN SK LG+ Sbjct: 109 YEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLTNNNPDKWLDMMNEKSKELGM 168 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKG 192 + T + NA G V G+Y TTARD+AI+++ +P+ + Y Sbjct: 169 TNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAIMTYNFIKKYPKILKYTSKPV 228 Query: 193 LEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + KG Y T N+++ G DG+KTG + FN + + +G+Q +IAVI Sbjct: 229 VTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPEGAFNYIDTIKRGNQRMIAVI 288 Query: 244 LGALD 248 +G+ D Sbjct: 289 MGSGD 293 >gi|157692820|ref|YP_001487282.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157681578|gb|ABV62722.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 385 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 16/223 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ AS+TK+MTA + K K + +SK A + S Sbjct: 41 LIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGKMKDT-----VKVSKRAIQAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K+G ++L++ L+++S ND AVAIAE + + + F+ MN + LG+ T+F Sbjct: 96 SIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGMENTNF 155 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----- 206 N HG+ H HY++A DMAIL+ R + QY +I G K W Sbjct: 156 QNPHGLDDHKNHYSSAYDMAILT-RYAMEHKQYQ---KIAGTTFYKAKTMEGYWKNKNKL 211 Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + + G KTG+T + +V++A +G+ +LIAV + A D Sbjct: 212 LTGLYQYSTGGKTGYTKLAKRTLVSTAAKGNAALIAVTINAPD 254 >gi|298246708|ref|ZP_06970513.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297549367|gb|EFH83233.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 338 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 18/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG+V+ + + P AS TK+MTA VV KK +P I + ++ S Sbjct: 85 LLDIDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKKEATVSP-DIPQYVFQHNGS 143 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N+ G T+T+++ L L++ S +D A+ +A ++ + FV MN + L THF Sbjct: 144 NAKLMPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSDAFVGMMNRFALRHHLFQTHF 203 Query: 153 MNAHGVVQH--------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GK 198 +N G+ + GHY++ARD+A L+ ++ P + + ++ Sbjct: 204 INPDGLTYYDANGNPLPGHYSSARDLARLTAYALSN-PLFAKIVGTRQYDLAWSPKHGAY 262 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVS 256 + NTN + G+KTGFT +G+ +V SA + L+ +L + D N R + + Sbjct: 263 HWANTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHHLVGTVLFSSNTDTNQRFRDA 322 Query: 257 ASLLSMGF 264 +LL GF Sbjct: 323 KTLLEWGF 330 >gi|300117503|ref|ZP_07055293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] gi|298725338|gb|EFI65990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] Length = 374 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + + LI V L A Sbjct: 235 SKDELDLIVVTLSA 248 >gi|213609716|ref|ZP_03369542.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDMA+ Sbjct: 1 MQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 60 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIV 229 + + D P ++ K G + N N W L DG+KTG T +G+N+V Sbjct: 61 IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWD--NSLNVDGIKTGHTSKAGYNLV 118 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ASA +G LI+ ++G R S LL+ GF Sbjct: 119 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 153 >gi|168179469|ref|ZP_02614133.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|182669511|gb|EDT81487.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] Length = 415 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLENFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|296186607|ref|ZP_06855009.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296048644|gb|EFG88076.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] Length = 379 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 12/201 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MT V + L I +S A+ S FKKG ++L L L++ Sbjct: 74 ASTTKIMTTLVAIKY-----GDLERKIEVSGKAAGIRGSTVGFKKGEKISLKELLYGLML 128 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+AIAE + + ++FVQ MN + +G+ THF + HG+ HYTTA D+A++ Sbjct: 129 RSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNTHFHSPHGLDYEDHYTTAYDLALI 188 Query: 174 SWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + K + + K ++ K + Y N N + A+G+KTG+T +G +V Sbjct: 189 TAKAK-EIKLFNDIVSSKDVDGKTYNFTRSYHNINKILWQLPEANGVKTGYTGKAGKCLV 247 Query: 230 ASA-IQGDQSLIAVILGALDR 249 S+ +QG+ +I V+L +R Sbjct: 248 TSSKVQGND-VIVVVLNCRER 267 >gi|302035815|ref|YP_003796137.1| putative d-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira defluvii] gi|300603879|emb|CBK40211.1| putative D-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira defluvii] Length = 309 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 14/230 (6%) Query: 28 LPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 +P +++L + TG + + + +PASLTK+M+A V+ + L +T+S Sbjct: 63 VPAHSILLKELKTGTTLYQFESEKRLSPASLTKIMSALVILEY-----GHLDDEVTVSPK 117 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ ++ + G L++ LK +++ SAND +A +E + E +FV MN + L Sbjct: 118 AARAHKTHLRLRTGQIFRLEDLLKAMLIVSANDACLAASEHVGGDEARFVDLMNAKAAAL 177 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKGKK 199 L THF NA G HY+TA D+A LS I P + + + E + Sbjct: 178 QLHNTHFSNACGFDAPEHYSTAEDLAKLS-EIALHHPVFKELVREEREIIMPINEHRAYV 236 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 TN +G G G+KTGFT +G ++A Q L+ VIL + R Sbjct: 237 LRTTNRLLGRIPGVQGVKTGFTSKAGRCLIAKVSQDGSDLLLVILNSKRR 286 >gi|255524149|ref|ZP_05391109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|255512134|gb|EET88414.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] Length = 358 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 12/201 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MT V + L I +S A+ S FKKG ++L L L++ Sbjct: 53 ASTTKIMTTLVAIKY-----GDLERKIEVSGKAAGIRGSTVGFKKGEKISLKELLYGLML 107 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+AIAE + + ++FVQ MN + +G+ THF + HG+ HYTTA D+A++ Sbjct: 108 RSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNTHFHSPHGLDYEDHYTTAYDLALI 167 Query: 174 SWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + K + + K ++ K + Y N N + A+G+KTG+T +G +V Sbjct: 168 TAKAK-EIKLFNDIVSSKDVDGKTYNFTRSYHNINKILWQLPEANGVKTGYTGKAGKCLV 226 Query: 230 ASA-IQGDQSLIAVILGALDR 249 S+ +QG+ +I V+L +R Sbjct: 227 TSSKVQGND-VIVVVLNCRER 246 >gi|229103155|ref|ZP_04233841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228680260|gb|EEL34451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 338 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90 L+D N+G VI + + P A+L+KLMT Y+V L K L + IS +E Sbjct: 40 LIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNNGKIQLDESVKISNELFQAETT 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N A+A+AE + E F MN +K L LS Sbjct: 100 PMQVTAKDKTTV--RDLLHALLLTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQP 157 Query: 150 THFMNAHGVVQHGHY---TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 + F+N+ G Q + TTA+D A L+ + DFP ++ ++ + K + NTN Sbjct: 158 SPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ + V +A GD LI+VIL + + NT + Sbjct: 218 KMIYSLNENIKLQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|170760236|ref|YP_001788291.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407225|gb|ACA55636.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 415 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ + H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNNKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSREKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKDNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|15612584|ref|NP_240887.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans C-125] gi|10172633|dbj|BAB03740.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans C-125] Length = 444 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 38/302 (12%) Query: 2 RQFLVIIAMAMLSNIF-PFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTK 58 + F++++AMAM+ ++F P ++ +L + L+D +G ++ D AS+TK Sbjct: 7 KWFILVLAMAMVFSMFTPAMTANAAFELEAESAILVDAESGKILYGKNIDAVLPTASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y++ + E + + IS E SN ++ T T+ + + + Sbjct: 67 MMSEYLILEAINEGEISWDQEVPISDYVRELSLYVQLSNVPLRQDETYTVKELYESVAIY 126 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------VVQHGHYT--- 165 SAN +A+AE + +E FVQ MN + LGL F+N+ G + H T Sbjct: 127 SANASTIALAELIAGSESAFVQRMNEKGEELGLEDFKFVNSSGLNNKDLLGNHPEGTDAN 186 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKKYPNTNWAVG---- 208 +AR A L++ + D+P+ + I +G EI + N NW + Sbjct: 187 AENVMSARATAKLAYNLLKDYPEVLETASIPEKTFRAGEGEEI---EMENWNWMLKGIRP 243 Query: 209 --TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG+T +G +A + LI+V++ R+ R K +A LL GF N Sbjct: 244 QHDYEGIDGLKTGYTAEAGNCFTGTAERNGMRLISVVMRTETRDDRFKETAKLLDYGFNN 303 Query: 267 KT 268 T Sbjct: 304 FT 305 >gi|206967983|ref|ZP_03228939.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|206736903|gb|EDZ54050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] Length = 374 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|288556011|ref|YP_003427946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288547171|gb|ADC51054.1| D-alanyl-D-alanine carboxypeptidase (serine) [Bacillus pseudofirmus OF4] Length = 382 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 139/295 (47%), Gaps = 19/295 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA L + + + IS NA S+ + G +M L++ + L++ Sbjct: 60 ASITKIMTA-----LLAIESGKMQEQVKISTNAEGTEGSSIYLRAGESMLLEDLVYGLML 114 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172 +S ND AVAIAE + + + FV MN ++ LG++ T F N HG+ H HY++A DMA+ Sbjct: 115 RSGNDAAVAIAEHVGGSLEGFVYLMNEKARELGMNQTQFQNPHGLDDHEDHYSSAYDMAL 174 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLG-ADGMKTGFTCASGFNI 228 L+ R + P Y K + G + + N N + + G KTGFT + + Sbjct: 175 LT-RYAMESPLYQEISSAKTHRVDGDQIRVWHNKNRLLTELYEYSTGGKTGFTKRARRTL 233 Query: 229 VASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 V++A + D LI V L A + N + + S + I +FY+ ++ Sbjct: 234 VSTASKDDLDLIVVTLNAPSDWHDHMNLFNWAFDSFSLETLVEEGMFKDIKDEFYKDHVF 293 Query: 287 N----EVPNISEEVCTTQKEIINYNTQMKEAKDK--ESHFIDFEKITLLKNKITK 335 + E P + E Q+++ Y +E +D+ H + ITL KI + Sbjct: 294 SPYTFEYPLLGSEKEMVQQKVTLYRPPTEEERDQYVPPHPVGKVDITLSGEKIGQ 348 >gi|304406838|ref|ZP_07388493.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304344371|gb|EFM10210.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 415 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 11/237 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E PAS+TK++TA V + A + +T+SK A + Sbjct: 52 LMDRRTGTILYEKNASQRMYPASITKIVTAIVAL-----ESANVEDVVTVSKEARGEEGT 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATH 151 ++G M L L ++V S ND A AIAE + +++KF +HMN + + Sbjct: 107 RVYLEEGEQMKLWQLLLGMMVNSGNDAATAIAEHVDGSKEKFAEHMNAWIREKANAYDSQ 166 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV 207 F N G+ HYTTA DMA ++ ++ ++ K + G+ + N N + Sbjct: 167 FRNPSGLPDPEHYTTAEDMAKITQYAMSN-EKFRELVGTKKVIWNGQTWQTVLVNHNKLL 225 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GT+ GA G+K G+T +G +VASA + LI VIL A N S+L GF Sbjct: 226 GTYDGATGVKNGYTTLAGSTLVASAERNGMELIGVILKAPSSNQMYADMRSILDYGF 282 >gi|229074990|ref|ZP_04207992.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] gi|228708047|gb|EEL60218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] Length = 338 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90 L+D N+G VI + + P A+L+KLMT Y+V L + + L + IS +E Sbjct: 40 LIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNDGQIQLDESVKISNELFQAETT 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N A+A+AE + E F MN +K L LS Sbjct: 100 PMQVTAKDKTTVR--DLLHALLLTGNNRSALALAEHIGGNEDNFTMLMNEKAKQLQLSQP 157 Query: 150 THFMNAHGVVQHGHY---TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 + F+N+ G Q + TTA+D A L+ + DFP ++ ++ + K + NTN Sbjct: 158 SPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ + V +A GD LI+VIL + + NT + Sbjct: 218 KMIYSLNENIKLQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|168186274|ref|ZP_02620909.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] gi|169295810|gb|EDS77943.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] Length = 375 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 18/261 (6%) Query: 1 MRQFLVIIAMAMLSNI--FPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWN 52 +R +I+ + +L NI PF+ E Y +D+ + V+ E + Sbjct: 4 LRVVSIILNICLLFNIAFVPFVEAVEPKNKSIYVDARCAIAMDSKSKCVLYEKNSEMLVP 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS TK+MT V + L +S A+ S +KKG ++L L L+ Sbjct: 64 IASTTKIMTTLVALKY-----GNLDRKFEVSPKAASIRGSKVGYKKGEQISLKELLYGLM 118 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D+A Sbjct: 119 LRSGNDAAITIAEGMSGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLAR 178 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ + K + + +K ++ K + Y N N + A+G+KTG+T +G + Sbjct: 179 ITAKAKEN-KLFNEIVGVKDVDEKKFGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCL 237 Query: 229 VASAIQGDQSLIAVILGALDR 249 V S + D +I V+L R Sbjct: 238 VTSVKENDDDVIIVVLNCTPR 258 >gi|196230570|ref|ZP_03129432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] gi|196225500|gb|EDY20008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] Length = 355 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 10/216 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ E D P PAS TK+MTA +V ++ L + S+ S Sbjct: 90 VLDELTGKVLYEKNADAPQFPASCTKIMTALLVI-----EEGDLDHEVVCDVEDSKVGES 144 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K T L L++KSAND+A A+ + + F + MN ++ LG THF Sbjct: 145 SLNLKPDQHFTRRQMLYGLMLKSANDVAHALGRDNAGSIEAFAEKMNRRARELGAQNTHF 204 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK--GLEIKGKKYP--NTNWAVG 208 +N +G+ HYTT RD+A+++ R P + + + G P N N + Sbjct: 205 VNPNGLHNPEHYTTPRDLALIA-RAAMHQPFFRQVVGTRDYNWNVNGVVDPLHNHNRLLE 263 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F G G+KTG+T + +V+SA++G++ +I+V++ Sbjct: 264 RFPGCTGVKTGYTIPAQQVLVSSAMRGNREVISVVM 299 >gi|260892761|ref|YP_003238858.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] gi|260864902|gb|ACX52008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] Length = 374 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 26/257 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLL 111 PASLTK+MT + ++ +T+S+ A+ + G + L +K Sbjct: 60 PASLTKVMTCILALEMADPEEV-----VTVSRRAAAISMGLVIDLRPGEQIKLRELIKAA 114 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VAIAE++ FV+ MN + LGL THF+N +G H++TA+D+A Sbjct: 115 LIHSANDATVAIAEAVAGDHDTFVRWMNAKALLLGLEDTHFVNTNGYSHPEHWSTAKDLA 174 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAV-GTFLGADGMKTGFTCAS 224 L+ R P + + ++ +K NTN + G + G+KTG T A+ Sbjct: 175 RLT-RYALQNPTFASLVATRQAVVRWEKPQRELPISNTNRLLHGGYPQVTGVKTGTTQAA 233 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G ++ASA G+Q +AV+L + R + + +LLS G + K++N K Y Sbjct: 234 GQCLIASARSGEQEFVAVVLKS---KNRYRDAVALLSWG---SKELKEVNLCDKGEYWTR 287 Query: 285 LS------NEVPNISEE 295 L +VP ++ E Sbjct: 288 LPVAEGRLGDVPLVARE 304 >gi|294852417|ref|ZP_06793090.1| predicted protein [Brucella sp. NVSL 07-0026] gi|294821006|gb|EFG38005.1| predicted protein [Brucella sp. NVSL 07-0026] Length = 258 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 5/150 (3%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 A---SEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A P ST + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +K LGLS++ F+N+ G+ G T D+ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDL 186 >gi|297569645|ref|YP_003690989.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfurivibrio alkaliphilus AHT2] gi|296925560|gb|ADH86370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfurivibrio alkaliphilus AHT2] Length = 365 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 7/215 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ PD P PAS K++TA + L++++ ++ S A+ P S Sbjct: 100 VVDPTTGRLLFALNPDQPRQPASTIKIVTALIAMQSLRDQEL-----VSTSARAARMPRS 154 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + + + ++ SAND +VA+AE + +E F + M + ++ +G + T Sbjct: 155 KIYLQAGRSYRAGDLINATLLSSANDASVALAERIAGSEAAFARLMTSKARAMGATNTVI 214 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVGTFL 211 N++G+ G +TARD+AI+ R + P++ G+ N A+ Sbjct: 215 HNSNGLTARGQQSTARDLAIILHRSMQN-PEFARRLGTTSASTNFGQTLRTNNRALWQIN 273 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GA+G KTGFT A+ V +G+Q LI ++G+ Sbjct: 274 GAEGGKTGFTRAARQTYVGKFKRGNQELIVALMGS 308 >gi|42526491|ref|NP_971589.1| penicillin binding protein [Treponema denticola ATCC 35405] gi|41816684|gb|AAS11470.1| penicillin binding protein [Treponema denticola ATCC 35405] Length = 478 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 128/294 (43%), Gaps = 56/294 (19%) Query: 14 SNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 SNI P E K+ Y L+ NTG ++AE+ D PASLTKL+T Y Sbjct: 84 SNIAPSAKKIELPKIDAESYILIHANTGTILAESNADKIIPPASLTKLVTIYT------- 136 Query: 72 KKAMLTTPITISKNASEYPPSNS---TFKKGS---------TMTLDNALKLLIVKSANDI 119 ML P +PP + KG+ +++++ ++ + V S ND Sbjct: 137 ---MLQKPQFKDLEKVVFPPEEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDA 193 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+A A + +KF MN K +GL +T F ++ G+ + TTARD A+ S Sbjct: 194 ALAAALLTEGSIEKFTLKMNEAVKTMGLKSTRFEDSSGLSEKNQ-TTARDFALFSLHYLK 252 Query: 180 DFPQYMHYFQ---------------------IKGLEIKGKKYPNTNWAVGTFLGADGMKT 218 +P+ + F +K +IK P TN + G DG+KT Sbjct: 253 QYPENLKKFHSVNEISYPQKHNILIKKNSDGLKDFQIK----PATNTLLKKIEGCDGLKT 308 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYN 266 GF SGFNI +A + + IAVILG +N R + S L++ F N Sbjct: 309 GFIYESGFNISLTAQKNGERFIAVILGGHGKNFTEGIFKREQNSIKLMNFAFDN 362 >gi|160880714|ref|YP_001559682.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160429380|gb|ABX42943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 429 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 16/222 (7%) Query: 33 LLDTNTGHVI--AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L+D + G V+ + Y + P AS TK+MT VV +KA L +T++ NA++ P Sbjct: 80 LMDASNGRVLYGKDAYKEMPM--ASTTKIMTLLVVL-----EKANLDDVVTVTSNAAKQP 132 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G L + L L+++S ND AVAIAE + + + F M +K LG + T Sbjct: 133 DVQLNIQTGEQYILRDLLYSLMLESHNDTAVAIAEHVGGSVEGFCNMMTEKAKELGANHT 192 Query: 151 HFMNAHGVVQHGHYTTARDMAIL-SWRIKT-DFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 F +G+ GHYTTARD++++ S+ IK +F + + + E+ K+ N N Sbjct: 193 SFKTPNGLDADGHYTTARDLSLIASYAIKNPEFCKIVGTATYQFNEVNHKRSFNVN-NRD 251 Query: 209 TFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 FL GA G+KTGFT +G+ V + ++L++ +LG+ Sbjct: 252 RFLYMMKGAIGIKTGFTGKAGYCFVGAVNIDGKTLVSTVLGS 293 >gi|170755725|ref|YP_001782612.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] gi|169120937|gb|ACA44773.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] Length = 415 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFPKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|25010217|ref|NP_734612.1| hypothetical protein gbs0142 [Streptococcus agalactiae NEM316] gi|77414952|ref|ZP_00791047.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515] gi|23094569|emb|CAD45787.1| Unknown [Streptococcus agalactiae NEM316] gi|77158996|gb|EAO70212.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515] Length = 395 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 50/266 (18%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + NK P +++ N GH++ E+ D +PAS++K+ T Y++F L + K L T +T Sbjct: 40 VKDINK-PKASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVT 98 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQ 136 ++ Y SN+ G + + + V S+N + IA L + F++ Sbjct: 99 ATETDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIK 158 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDF 181 +N T+K L ++ THF N G V +G Y TTARD++IL++ + Sbjct: 159 RINETAKKLDMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKY 218 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-------------------FLGADGMKTGFTC 222 P ++Y KYP VGT G DG+KTG + Sbjct: 219 PDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSP 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALD 248 ++ FN + +A + + LI VILG D Sbjct: 269 SAAFNALVTAKRQNTRLITVILGVGD 294 >gi|324325585|gb|ADY20845.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEKVLVSNEAVRVEGSAIYLKAGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|322807302|emb|CBZ04876.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402 065] Length = 415 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|30020624|ref|NP_832255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|229044252|ref|ZP_04191925.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|229109961|ref|ZP_04239541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|229127903|ref|ZP_04256888.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|29896176|gb|AAP09456.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|228655547|gb|EEL11400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228673482|gb|EEL28746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|228725077|gb|EEL76361.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L +KK L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|49477760|ref|YP_036665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329316|gb|AAT59962.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTV--RDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +G+ LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGNTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|326939188|gb|AEA15084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|229542251|ref|ZP_04431311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] gi|229326671|gb|EEN92346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] Length = 468 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 33/271 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D + G ++ E + AS++K+MT Y++ + EKK +TIS A Sbjct: 73 IVDADNGQILYEKNANQALGIASMSKMMTEYLLLKAIHEKKVSWNQKVTISDYAYRISQN 132 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +KG T+ + + + SAN +AIAE+L TEK ++ MN +K GL+ Sbjct: 133 RALSNVPLRKGEKYTVKELFQAMAIYSANGATIAIAETLGGTEKNYLNMMNKQAKAFGLT 192 Query: 149 ATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ + +A+ +A +++ + D+P+ + ++ Sbjct: 193 DYKFVNATGLNNEDLQGMQPEGTGRTEENLVSAKSVAKIAYHLIHDYPEILQTTSTAKMK 252 Query: 195 IKGK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + N NW + + + G DG+KTG T +G+ +A Q +I V+L Sbjct: 253 FRAGTDDEIAMQNWNWMLPSLVYGRQGVDGLKTGNTDNAGYCFTGTAKQNGMRIITVVLH 312 Query: 246 ALDRN------TRNKVSASLLSMGFYNKTDR 270 A D N +R V+ L+ F N T++ Sbjct: 313 AEDANGNSTIKSRFDVTNKLMDYAFSNFTEK 343 >gi|138893689|ref|YP_001124142.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196251175|ref|ZP_03149851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|134265202|gb|ABO65397.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196209316|gb|EDY04099.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 452 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 39/300 (13%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLT 57 F+ ++++ + ++PF + + P L+D TG ++ E D AS+T Sbjct: 9 FVWLLSICLCLTLWPFQATVKAESAPLDIRADAAILVDAQTGRILYEKNIDAVLGIASMT 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 K+MT Y++ +K K+ T S + + + SN +K T+ + + + Sbjct: 69 KMMTEYLLLDAIKAKRVKWDQTYTPSDYVYRLSQDRSLSNVPLRKDGQYTVRELYEAMAI 128 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGHYT-- 165 SAN VAIAE + +EK FV+ MN K LGL F+N+ G+ H T Sbjct: 129 YSANAATVAIAEIIAGSEKNFVRMMNEKGKELGLKDYKFVNSTGLSNSDLKGFHPQGTSQ 188 Query: 166 ------TARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGK----KYPNTNWA----VGTF 210 +AR MA L++R+ D P+ + I K L +G + N NW V + Sbjct: 189 DEENVMSARAMATLAYRLLKDHPEVLETASIPKKLFREGTDDEIRMDNWNWMLPGLVYGY 248 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGF 264 G DG+KTG+T +G +A + LI+V++ G + R + + L + GF Sbjct: 249 EGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKNASGKTTKEARFEETKKLFNYGF 308 >gi|153938417|ref|YP_001392255.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|152934313|gb|ABS39811.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] Length = 415 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKDNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|218232010|ref|YP_002367234.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus B4264] gi|229145140|ref|ZP_04273532.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|218159967|gb|ACK59959.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264] gi|228638338|gb|EEK94776.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|218896498|ref|YP_002444909.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|218543820|gb|ACK96214.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] Length = 374 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|296503088|ref|YP_003664788.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|296324140|gb|ADH07068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELQLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|291459956|ref|ZP_06599346.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417297|gb|EFE91016.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] Length = 509 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 27/232 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---E 88 L+D +TG V+ E + PAS+TK+MTA VV K A L ++ S +A + Sbjct: 47 ALMDADTGAVLFEKNGEQRMYPASITKVMTALVVL-----KHANLEDQVSFSHDAVYNVD 101 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ +G +T+ + L L++KSAN+ A A+AE + + +KF + MN + LG S Sbjct: 102 YGSSNAQIDEGDVLTVSDCLHALLLKSANEAANALAEHVAGSREKFAEMMNEEAAALGCS 161 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP------ 201 THF N G+ HYTTA DMA++ D +++ + K +KG ++ P Sbjct: 162 GTHFSNPSGLFSEDHYTTAHDMALIGQAAFRD-KRFLDIEKEKSYTLKGCRRNPEGITIY 220 Query: 202 --------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 N+ + + KTGFT +G ++ A G + LIAV+LG Sbjct: 221 MEHKMLLQNSPYYDERVVAG---KTGFTKDAGNTLLTLAQSGKRRLIAVVLG 269 >gi|228908280|ref|ZP_04072125.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228851321|gb|EEM96130.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 338 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKDEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTMLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|108805102|ref|YP_645039.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus DSM 9941] gi|108766345|gb|ABG05227.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus DSM 9941] Length = 384 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+M A V + + +P + A Y SN + G ++L L ++ Sbjct: 63 ASTTKIMLAIVALREGGLDREVAVSPRAAAYAAPPY--SNVGLRAGDVLSLRELLMASLI 120 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 S +D A A+AE+L ++ V+ MN ++ LGL THF N G+ H ++ARD+ Sbjct: 121 SSGDDAAYALAEALGGGSVERLVEKMNREARRLGLEDTHFQNPVGLDGRRHRSSARDLVR 180 Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNI 228 +S R +P + + + ++ P NTN + T+ A G+KTG T A+G + Sbjct: 181 MS-REAMQYPLFREIVATRYAVISTPDREIPLTNTNELLFTYPPATGIKTGTTPAAGPCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 VASA GD+S +AV+L A R R S LL GF + DR+++ Sbjct: 240 VASAASGDESYVAVVLDA--RADRFAASLRLLEYGF-SAYDRREL 281 >gi|323704241|ref|ZP_08115820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536307|gb|EGB26079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 22/251 (8%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D TG V+ + + PAS TK++TA + +K L +T++ + Sbjct: 33 PTAVLMDFTTGQVLYDKNMNQRMYPASTTKILTAIIAI-----EKGKLNDVVTVNDDVKN 87 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ G +TL+ L ++++SAND A+A+A+ + + + F MN +K +G Sbjct: 88 IDGNSIYLVPGEKLTLEQLLYAMLLESANDAAIAVADHIGGSIQGFANLMNEKAKEIGAK 147 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILS--------WR-----IKTDFPQYMHYFQIKGLEI 195 +HF+N +G+ HY+T DMA+++ +R I P + + + L I Sbjct: 148 DSHFVNPNGLPNTEHYSTPYDMALIARYAMRNATFRKIVSTIHYQIPPTNKFDKPRDLWI 207 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + T++ + GADG+KTG+T A+ V SA + LI+VI+G N Sbjct: 208 SNRLIKPTSFH---YDGADGVKTGYTIAANQVFVGSATRNGHRLISVIMGDEGTNIWTD- 263 Query: 256 SASLLSMGFYN 266 + LL+ GF N Sbjct: 264 TIKLLNYGFNN 274 >gi|56961794|ref|YP_173516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56908028|dbj|BAD62555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 429 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 33/300 (11%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPY----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + A+AML+ + + A L +++ +TG ++ E D AS+TK+MT Sbjct: 1 MAALAMLAFVLGPIKPASAQSLTVDASAAIVVNADTGQILFEQNSDEQLAIASMTKMMTE 60 Query: 63 YVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 Y+V + +TI+ + + + SN ++ T T+ + + + + SAN Sbjct: 61 YIVLESIANGDISWEDEVTITDHLLPLSHQRELSNVPLRQDYTYTVKDLYESMAIYSANA 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------VQHGHYT------- 165 +A+AE + TE +FV MN ++ LGL F+NA G+ +H T Sbjct: 121 STMALAEHVAGTEAQFVAKMNEKAEELGLEKYEFINASGLNNADLQGEHPEGTPADGETT 180 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWAVGT----FLGAD 214 +AR +A L++ + DFP+ + + G + K N NW + + G D Sbjct: 181 LSARSVAQLAYHLLKDFPEVLDTASVPEAVFDSGPDEK-IDMQNWNWMLPNSPHYYEGVD 239 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G+KTG+T A+G + A+A + LI V++G R+ R + LL GF + + I+ Sbjct: 240 GLKTGYTDAAGNSFTATAERDGVRLITVVMGTDTRDDRFNETKKLLDYGFSQFEEHRIID 299 >gi|228938680|ref|ZP_04101285.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971562|ref|ZP_04132186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978173|ref|ZP_04138551.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228781645|gb|EEM29845.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228788221|gb|EEM36176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821056|gb|EEM67076.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 378 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|300854527|ref|YP_003779511.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434642|gb|ADK14409.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium ljungdahlii DSM 13528] Length = 413 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 23/227 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D T +I E D PAS TKL+TA L EK +T + +A PPS+ Sbjct: 41 VDMQTNEIIYEKNADIKMYPASTTKLLTA-----ILLEKNKKPGDMLTYTADAKSQPPSS 95 Query: 94 -----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + G TM+ ++ + L++ SAND+A +AE++ K F MN KNL L Sbjct: 96 LNRDLHAIEVGDTMSAEDVMDGLLMYSANDLAYVVAENVSKDAPTFSDKMNEEVKNLNLK 155 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGKKYP--NT 203 THF+ +G+ HYTT DM++++ R P+ + I KG +P NT Sbjct: 156 NTHFVTPNGLHNPNHYTTPYDMSVIA-RQAFKIPRIQKAMERPANTIKTTKGLAFPIKNT 214 Query: 204 NWAVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N LG DG KTG+T +G +VA + + ++ V++G++ Sbjct: 215 N----KLLGKDGCIAGKTGYTDPAGRCLVAIYNRNGREMVGVVMGSV 257 >gi|227815684|ref|YP_002815693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|254682367|ref|ZP_05146228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721249|ref|ZP_05183039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254733782|ref|ZP_05191496.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] gi|254740527|ref|ZP_05198218.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|254753916|ref|ZP_05205951.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254759012|ref|ZP_05211039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|227004936|gb|ACP14679.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] Length = 374 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|326205032|ref|ZP_08194882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] gi|325984837|gb|EGD45683.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] Length = 405 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 23/270 (8%) Query: 6 VIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVI-AENYPDHPWNPASLTKLMTA 62 VI+ M ++ N FP + AE+ L+DT G V+ +N H +P+ + KLMTA Sbjct: 8 VIVTMILVLNSFPVFAWTPAESLTSSSVVLMDTVRGQVLFGKNAYKH-LSPSVMCKLMTA 66 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 V +K L +TISKNA+ + N G+ T+++ L +++ ND AVA Sbjct: 67 LVTI-----EKTDLNAKVTISKNAASFNGLNLVV--GNQYTVEDLLYAVMLSQGNDAAVA 119 Query: 123 IAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + +KFV++MN +K L L T+F+N G+ + YT+A D+A+L IK Sbjct: 120 LAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKSQYTSANDIALL---IKAAI 176 Query: 182 PQ--YMHYFQIKGLE-IKGKK---YPNTNWAVGTFLGADGMKTGF-TCASGFNIVASAIQ 234 + F +G + G N N ++ G DG K G T F+ V +A Q Sbjct: 177 SNNTFNVIFGARGFGWLNGNDSSILTNQNTLFWSYKGVDGGKLGANTNPQSFSAVTTAFQ 236 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 D+ LIAV+ N ++ +A L GF Sbjct: 237 NDKRLIAVVFNNSKENAFSE-TAKLFDYGF 265 >gi|229190640|ref|ZP_04317636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228592773|gb|EEK50596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] Length = 338 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|228907200|ref|ZP_04071061.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228852421|gb|EEM97214.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 378 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|75764308|ref|ZP_00743843.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488202|gb|EAO51883.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 349 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 51 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 110 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 111 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 165 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 166 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 224 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 225 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 284 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 285 SKDGLDLIVVTLSA 298 >gi|307270557|ref|ZP_07551855.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX4248] gi|306513138|gb|EFM81772.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis TX4248] Length = 493 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 50/283 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + Sbjct: 64 VVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKI 123 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + LK++ V S+N + +A + + FV MN + LG+ Sbjct: 124 YAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGM 183 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQ--------- 183 + T + N G +G Y +TARD+A L++ ++P+ Sbjct: 184 TNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPV 243 Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y F+ + G KY + G DG+KTG + GFN +A+ Q Sbjct: 244 VKTMVGTPYEETFEAYNYSLPGAKY--------GYQGVDGLKTGSSPTGGFNYIATVKQE 295 Query: 236 DQSLIAVILGA-----LDRNTRNKVSASLLSMGFYNKTDRKKI 273 D LI VILG D V+ + L Y +RKK+ Sbjct: 296 DFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKL 338 >gi|148380930|ref|YP_001255471.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 3502] gi|153933353|ref|YP_001385299.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936108|ref|YP_001388707.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|148290414|emb|CAL84541.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|152929397|gb|ABS34897.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932022|gb|ABS37521.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] Length = 415 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG + T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNILPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|322389162|ref|ZP_08062723.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] gi|321144067|gb|EFX39484.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 33/268 (12%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D NTG+V+ ++ D +PAS++KLMT Y++F + Sbjct: 30 MAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDEVRDPASMSKLMTLYLLFEDMAN 89 Query: 72 KKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K ++ I AS+ Y SN+ G T+ + + +V S+N + +A Sbjct: 90 GK--ISKDTVIKATASDQAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLAN 147 Query: 126 SLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHY------------TTARD 169 + + F++ MN +K LG++ T + N G G+Y TTARD Sbjct: 148 LMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQGYYQVNNYPNDAANQTTARD 207 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGF 220 + IL + +P ++Y + + KG Y T N+++ G DG+KTG Sbjct: 208 LGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGS 267 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 + FN +A+ +G+Q LIAVI+G D Sbjct: 268 SPRGAFNYIATIKRGNQRLIAVIMGVGD 295 >gi|331269468|ref|YP_004395960.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] gi|329126018|gb|AEB75963.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] Length = 381 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D+ T V+ E + AS TK+MT V + L +S A+ S Sbjct: 50 IDSKTKCVLYEKNAEMLLPIASTTKIMTTLVALKY-----GNLDDKFQVSAKAASIRGSQ 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +KKG ++ L L L+++S ND A+ IAE L + +KF + MN + +G +HF Sbjct: 105 VGYKKGESVALKELLYGLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFE 164 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGT 209 + HG+ HY+TA D+A ++ + K + + +K +E K + Y N N + Sbjct: 165 SPHGLDSQNHYSTAYDLARITAKAKEN-ELFNKIVGVKDVEAKEYGFTRSYHNINKILYQ 223 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 A+G+KTG+T +G +V S D +I V+L R Sbjct: 224 IPNANGVKTGYTGGAGKCLVTSVKDHDDDIIIVVLNCTPR 263 >gi|160892647|ref|ZP_02073437.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50] gi|156865688|gb|EDO59119.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50] Length = 323 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 33/242 (13%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPS 92 D+ ++ N D + PAS+TKLMT +V +++ L IT+S + E Sbjct: 77 DSTKEALVVHNAHDRIY-PASMTKLMTGLLVMESIEDGTLSLDDTITLSHTVTFQEDNVG 135 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S KG ++T+ N L L+++S ND V +AE + +E FV+ MN + LG + THF Sbjct: 136 VSDLTKGCSVTVKNLLYGLLIRSYNDCGVLLAEKIAGSEDAFVEKMNEKAFELGATNTHF 195 Query: 153 MNAHGVVQHGHYTTARDM-AILSWRIKTDFPQYMH--------YFQIKGLE--------- 194 +N HG+ HYTTA D+ I S IK D + Y G E Sbjct: 196 VNCHGLHSDDHYTTAYDLYLIFSEFIKHDMAYLIDSLDSYDFTYTDETGAEKSVTLQATN 255 Query: 195 --IKGK-KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD--QSLIAVILGALDR 249 I G+ K+P +++G++ K+G T A+G ++ ++ D +AVI GA DR Sbjct: 256 GYISGEFKFPE-GYSLGSW------KSGTTTAAGNCLILEFVKDDTGDKYVAVIAGAEDR 308 Query: 250 NT 251 +T Sbjct: 309 DT 310 >gi|296876825|ref|ZP_06900873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 15912] gi|296432327|gb|EFH18126.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 15912] Length = 449 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 33/268 (12%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M ++P ++ N+ ++D NTG+V+ ++ D +PAS++KLMT Y++F + Sbjct: 30 MAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDEVRDPASMSKLMTLYLLFEDMAN 89 Query: 72 KKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K ++ I AS+ Y SN+ G T+ + + +V S+N + +A Sbjct: 90 GK--ISKDTVIKATASDQAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLAN 147 Query: 126 SLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHY------------TTARD 169 + + F++ MN +K LG++ T + N G G+Y TTARD Sbjct: 148 LMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQGYYQVNNYPNDAANQTTARD 207 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGF 220 + IL + +P ++Y + + KG Y T N+++ G DG+KTG Sbjct: 208 LGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGS 267 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 + FN +A+ +G+Q LIAVI+G D Sbjct: 268 SPRGAFNYIATIKRGNQRLIAVIMGVGD 295 >gi|15639787|ref|NP_219237.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026025|ref|YP_001933797.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp. pallidum SS14] gi|3323112|gb|AAC65769.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018600|gb|ACD71218.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp. pallidum SS14] gi|291060158|gb|ADD72893.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp. pallidum str. Chicago] Length = 490 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 34/272 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASE 88 Y + + +G ++A D P PASL KL+T VV L+ + I + + +A Sbjct: 101 YAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALERGELHWQQRIRVPLAGSAQA 160 Query: 89 YPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + P +S + G +++ + L + + S ND A +A ++ + F MN + G Sbjct: 161 FAPGSSLIFLRTGEYISVHDLLAGMNIASGNDAAYTLAYAVAGSIPAFCTRMNTLVQKWG 220 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKY 200 L+ T F+ G+ +H + TTARD + + +P+ + YFQ + Sbjct: 221 LTRTRFVEPSGLSEH-NVTTARDFVLFCCQYVRRWPENLARFHARSYFQRSNSPATSRIP 279 Query: 201 PNTNW-AVGTFL--------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 P+T + A T L G DG+KTG+ SGFN+ S+++GD +IAVILG Sbjct: 280 PHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESGFNVALSSLRGDTRIIAVILG 339 Query: 246 AL------DRNTRNKVSASLLSMGF--YNKTD 269 + R + A+LL F + TD Sbjct: 340 GAGNSIPEGKRIRARDGATLLYWAFTHFQCTD 371 >gi|303241828|ref|ZP_07328323.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio cellulolyticus CD2] gi|302590603|gb|EFL60356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio cellulolyticus CD2] Length = 429 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 27/257 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEY 89 Y L+D+ TG VI+E D PAS TK+MTA + ++ M T+S+ A + Sbjct: 33 YILIDSKTGQVISEYNADQKLYPASTTKIMTAIIGIENADPEQLM-----TVSQYAINNI 87 Query: 90 PPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P N G + + L L+V+SAN+ A IAE++ T + F MN +K L Sbjct: 88 GPGGMNIGLLPGEQLKFKDVLNALLVRSANETAYVIAENVGPTPEAFFAKMNQRAKELAC 147 Query: 148 SATHFMNAHGV----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGK 198 + T+F+N G+ H TTARD+++++ T P + + I + + Sbjct: 148 TNTNFVNPCGMDTDEASQNHLTTARDLSLMAKHAMT-LPLFKEIVKKTSCTIPPTNMHNE 206 Query: 199 KY--PNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDR 249 Y P+TN ++ + G+KTG+T + FN+V+SA + LI+VILG + Sbjct: 207 AYTLPSTNKLFYGKYSSKYYNEVTGIKTGYTVRASFNLVSSAKNEEGMELISVILGCPNS 266 Query: 250 NTRNKVSASLLSMGFYN 266 + S LL GF N Sbjct: 267 EGIYQSSKDLLEYGFKN 283 >gi|229074074|ref|ZP_04207123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|229094734|ref|ZP_04225742.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228688672|gb|EEL42542.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228709037|gb|EEL61161.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 444 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 51 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E++ E FV+ MN+ +K LGL Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLK 170 Query: 149 ATHFMNAHGVV------QHGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ QH TT ARD+AIL+ + D+P+ + +I K + Sbjct: 171 NYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKV 230 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G + + I+V++ Sbjct: 231 FQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 291 TSSHTARFDETKKLYDYGFAN 311 >gi|118477025|ref|YP_894176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|118416250|gb|ABK84669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] Length = 386 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 13 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 72 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 73 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 128 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 186 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 187 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 247 SKDGLDLIVVTLSA 260 >gi|229113688|ref|ZP_04243125.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228669754|gb|EEL25159.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] Length = 425 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 32 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQD 91 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E++ E FV+ MN+ +K LGL Sbjct: 92 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLK 151 Query: 149 ATHFMNAHGVV------QHGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ QH TT ARD+AIL+ + D+P+ + +I K + Sbjct: 152 NYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKV 211 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G + + I+V++ Sbjct: 212 FQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIK 271 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 272 TSSHTARFDETKKLYDYGFAN 292 >gi|326201672|ref|ZP_08191543.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] gi|325988272|gb|EGD49097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] Length = 440 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 37/292 (12%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +I++ +L + P Y L+D TG V+ E PD W PAS TK+ TA V Sbjct: 8 LIVSFILLFQVTPAFCANLDIDAASYILMDAKTGSVLYEYKPDLKWRPASTTKIATALVA 67 Query: 66 FSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 LKE K L +T S A N G M+L+N L L++ SAN+ A Sbjct: 68 ---LKEGK--LDQMMTASNEAVSDIGVGGMNIGIMPGEQMSLNNLLHALLIVSANETANI 122 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----GHYTTARDMAILSWRIK 178 I+E+L + KF+ MN + + G T F N G+ ++ H+++ARD+A+++ Sbjct: 123 ISENLFNDKTKFLAEMNKFAADAGAKNTTFTNPCGIDEYEKDADHFSSARDLALIAKEC- 181 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAV--------------GTFLGAD-------GMK 217 +P + K L + W + G G D G+K Sbjct: 182 LKYPLFREIIGQKQLSTLPATNKHKTWNILNNTNKLLGKSFKYGPETGDDRNQYTITGLK 241 Query: 218 TGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRN--KVSASLLSMGFYN 266 TG T +G N ++SA+ D LI+V+LG ++ R+ + +LL G+ N Sbjct: 242 TGSTSRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLKAGYEN 293 >gi|229173162|ref|ZP_04300712.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|228610339|gb|EEK67611.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 442 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V + + K + IS+ A + Sbjct: 51 LVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKIKWDQKVKISEYAYKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E + E FV+ MN+ SK G+ Sbjct: 111 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVDFVKMMNDKSKEFGMK 170 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ + GH+ +ARD AIL+ R+ DFP+ + +I Sbjct: 171 NYKFVNSTGLTNYDLKGHHPEGTTPDEKNKMSARDCAILAKRLVQDFPKILDTAKIPKKT 230 Query: 195 IK-GKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + G KYP N N + + G DG+KTG T +G + + LI+V++ Sbjct: 231 FQNGGKYPIDMVNFNMMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIK 290 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 A R + L GF N Sbjct: 291 ANSHTARFDETKKLYDYGFAN 311 >gi|196039076|ref|ZP_03106383.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|196030221|gb|EDX68821.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] Length = 374 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|196036818|ref|ZP_03104207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196047629|ref|ZP_03114836.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|218902679|ref|YP_002450513.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|225863432|ref|YP_002748810.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB102] gi|301053108|ref|YP_003791319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|195990547|gb|EDX54526.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196021543|gb|EDX60243.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|218536387|gb|ACK88785.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|225788779|gb|ACO28996.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102] gi|300375277|gb|ADK04181.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 374 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|229009524|ref|ZP_04166753.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|228751735|gb|EEM01532.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 418 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 25 LVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 85 RSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKELGLK 144 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ GH+ +ARD+AIL+ R+ DFP+ + +I K + Sbjct: 145 NYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKISKKV 204 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G + PN NW + + G DG+KTG T +G + + I+V++ Sbjct: 205 FREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 265 TKSHTARFDETKKLYDYGFAN 285 >gi|196043568|ref|ZP_03110806.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|196025877|gb|EDX64546.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] Length = 338 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 P T K +T+ + L L++ N +A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTV--RDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQP 157 Query: 151 H-FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 FPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL + + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAQRGDTRLISVILDSNEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|49481056|ref|YP_035686.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332612|gb|AAT63258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|228926600|ref|ZP_04089669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832976|gb|EEM78544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 378 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|152974993|ref|YP_001374510.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023745|gb|ABS21515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 373 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 12/251 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKL 59 R ++++ + M + P + A+ N + + L++ ++G V+ P AS+TK+ Sbjct: 3 RAWVIVALLIMCMHTMPNSTYAQMNNVSAHNAVLMEEHSGRVLYGKREHEPQKIASITKI 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA L + + ++IS A S K G + L++ + L+++S ND Sbjct: 63 MTA-----LLAAESGKMKEMVSISNKAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDA 117 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIK 178 A AIAE + + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + Sbjct: 118 AQAIAEKVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-KYA 176 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + F K + + YP N + A G KTGFT +G +V +A + Sbjct: 177 MGNETFRKIFGTKTYQSESWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKN 236 Query: 236 DQSLIAVILGA 246 I V L A Sbjct: 237 GLDFIVVTLKA 247 >gi|228914143|ref|ZP_04077761.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932855|ref|ZP_04095722.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945169|ref|ZP_04107525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814404|gb|EEM60669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826776|gb|EEM72543.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845476|gb|EEM90509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 378 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|229100800|ref|ZP_04231618.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228682607|gb|EEL36666.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 430 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 37 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQD 96 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+ E++ E FV+ MN+ +K LGL Sbjct: 97 RSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLK 156 Query: 149 ATHFMNAHGVV------QHGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ QH TT ARD+AIL+ + D+P+ + +I K + Sbjct: 157 NYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKV 216 Query: 194 EIKGKKYP----NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G KYP N NW V + G DG+KTG T +G + + I+V++ Sbjct: 217 FQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIK 276 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 277 TSSHTARFDETKKLYDYGFAN 297 >gi|21674088|ref|NP_662153.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS] gi|21647242|gb|AAM72495.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS] Length = 474 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 17/243 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + +T + + D P +PASLTK+MT + + + +TI A++ Sbjct: 48 YIVKETGSPEFLKSKNADTPRSPASLTKIMTCLLAI-----ESGRMNDVVTIPLEATQVE 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 P+ + FK G L + +K +V S+ND A AIA L + FV MN ++ LG+S T Sbjct: 103 PTRAGFKPGEQFRLRDLVKAAMVNSSNDAAFAIAIHLGGSLDAFVAMMNARARALGMSHT 162 Query: 151 HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYP-- 201 F N G + G+ TTARD+ IL+ R FP++ ++ ++ GK Y Sbjct: 163 VFTNPAGYDRGIYAGNRTTARDLVILTERA-IRFPEFNAIAKLDRVDFNELSTGKIYSLR 221 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + + + G+KTG+T +G ++A A++ + ++ ++L A R R +++++ Sbjct: 222 THNKLLERYPYSVGIKTGYTSMAGPCLIARALRNGKDMLVIMLSA--RTDRWSLASTMFD 279 Query: 262 MGF 264 GF Sbjct: 280 QGF 282 >gi|47569141|ref|ZP_00239829.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|47554212|gb|EAL12575.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] Length = 374 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|228477390|ref|ZP_04062026.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius SK126] gi|228250825|gb|EEK10013.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius SK126] Length = 446 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 29/242 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 L+D NTG ++ ++ D +PAS++K M+ Y+VF L + + T IT A+ Sbjct: 49 LIDANTGDILWQDNIDEVRDPASMSKAMSLYLVFDALSKGEIKEDTVITAKPTDEAIANI 108 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 Y SN+ G T+ + + V S+N V +A L + K++ MN SK LG+ Sbjct: 109 YEISNNKIVSGVKYTVSELITMTAVPSSNAATVMLANYLSDNDPDKWIDRMNEKSKELGM 168 Query: 148 SATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + T + NA G H + TTARD++I+++ + P+ + Y + Sbjct: 169 TNTKWYNASGAGAASYKGYYTPKRYDNNHSNQTTARDLSIMAYNLIKHHPEILKYTSQQT 228 Query: 193 LEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + KG Y T N+++ G DG+KTG + +N +++ +G+Q +I+VI Sbjct: 229 VTVKKGTPYEETFENYNYSLPGADYGLKGVDGLKTGSSPRGDYNYISTCKRGNQRVISVI 288 Query: 244 LG 245 LG Sbjct: 289 LG 290 >gi|228921242|ref|ZP_04084570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838412|gb|EEM83725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 338 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|265994989|ref|ZP_06107546.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|265999456|ref|ZP_06111697.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|262766102|gb|EEZ11891.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263094078|gb|EEZ18000.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] Length = 205 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYF 188 F N G+ + TTARDMA+L ++ DFP+ F Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALF 204 >gi|229150753|ref|ZP_04278967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228632840|gb|EEK89455.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] Length = 338 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L +K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNNRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|17987196|ref|NP_539830.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase fraction C) [Brucella melitensis bv. 1 str. 16M] gi|260564074|ref|ZP_05834560.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|265991153|ref|ZP_06103710.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|17982866|gb|AAL52094.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase fraction c) [Brucella melitensis bv. 1 str. 16M] gi|260154090|gb|EEW89182.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|263001937|gb|EEZ14512.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] Length = 205 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 46 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 106 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 165 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYF 188 F N G+ + TTARDMA+L ++ DFP+ F Sbjct: 166 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALF 204 >gi|154710434|gb|ABS84279.1| DacC [Treponema paraluiscuniculi] Length = 490 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 34/272 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASE 88 Y + + +G ++A D P PASL KL+T VV L+ + I + + +A Sbjct: 101 YAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALERGELHWQQRIRVPLAGSAQA 160 Query: 89 YPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + P +S + G +++ + L + + S ND A +A ++ + F MN + G Sbjct: 161 FAPGSSLIFLRTGEYISVHDLLAGMNIVSGNDAAYTLAYAVAGSIPAFCTRMNTLVQKWG 220 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKY 200 L+ T F+ G+ +H + TTARD + + +P+ + YFQ + Sbjct: 221 LTRTRFVEPSGLSEH-NVTTARDFVLFCCQYVRRWPENLARFHARSYFQRSNSPATSRIP 279 Query: 201 PNTNW-AVGTFL--------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 P+T + A T L G DG+KTG+ SGFN+ S+++GD +IAVILG Sbjct: 280 PHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESGFNVALSSLRGDTRIIAVILG 339 Query: 246 AL------DRNTRNKVSASLLSMGF--YNKTD 269 + R + A+LL F + TD Sbjct: 340 GAGNSIPEGKRIRARDGATLLYWAFTHFQCTD 371 >gi|326409095|gb|ADZ66160.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis M28] gi|326538799|gb|ADZ87014.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase fraction C) [Brucella melitensis M5-90] Length = 192 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 33 WVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKV 92 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T Sbjct: 93 RMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKST 152 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYF 188 F N G+ + TTARDMA+L ++ DFP+ F Sbjct: 153 IFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALF 191 >gi|226950403|ref|YP_002805494.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] gi|226841760|gb|ACO84426.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] Length = 415 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 19/248 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D+ TG +I PD P+ PAS TK+MTA L ++ L +TI + S Sbjct: 41 LMDSKTGKIIYSKNPDKPYPPASTTKIMTA-----LLTLERGNLDDIVTIGRKPPLAEGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L++ SAND A A+AE L + F + MN +K LG T+F Sbjct: 96 KIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCINTNF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+AI+ + P+Y + I +K P N N Sbjct: 156 VNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENK 214 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G +G KTG+T S + VAS + + +I ++ ++N + S L Sbjct: 215 LIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRIIVALVHDKEKNFFDD-SVKLF 273 Query: 261 SMGFYNKT 268 + GF N T Sbjct: 274 NYGFNNFT 281 >gi|260881011|ref|ZP_05403380.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260850172|gb|EEX70179.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 412 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 22/244 (9%) Query: 17 FPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P L I+ + L T ++D +G VI E D PAS TK+MT L Sbjct: 55 IPGLVISPDDPLQNLTARSAVVIDAASGQVIYERNKDERRFPASTTKIMTL-----ILAL 109 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + + + +T+S NA+ S + G + + + L +++ S ND VA+AE + + Sbjct: 110 EHSNMDDMVTVSSNAAGTEGSTLWLEAGEKIRMGDLLYGMMMHSGNDATVAVAEHIAGSV 169 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS---WRIKTDFPQYMHYF 188 KF M + +G T+F NA+G+ + HYTTA D+A ++ +R+ P + Sbjct: 170 DKFAAMMTAKAHEIGAVNTNFANANGLPREDHYTTAYDLAKITAYGYRV----PGFEQIV 225 Query: 189 QIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K ++ K P N N + + GA+G+KTG+T A+G +V+ A + L+AV+ Sbjct: 226 STKEIDFDWVKDPSHHLRNENQMLWLYRGANGVKTGYTDAAGRCLVSGAKKDGLQLVAVV 285 Query: 244 LGAL 247 L ++ Sbjct: 286 LDSV 289 >gi|68171447|ref|ZP_00544835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis str. Sapulpa] gi|88657866|ref|YP_507852.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia chaffeensis str. Arkansas] gi|67999128|gb|EAM85790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis str. Sapulpa] gi|88599323|gb|ABD44792.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 381 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 1/236 (0%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + D + ++ E+ D P+S+T LMT YV F ++K + SK A + Sbjct: 33 PQAAVFDFFSNTMLLEHNIDEQIAPSSMTNLMTLYVTFYYIKAGFVKMEDKFKTSKEAWQ 92 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ + G + + + + +I SAND + +AE + +++ FV MN ++ L L+ Sbjct: 93 KGGNSIFLRAGQLVAVRDLINGIITTSANDACITLAEGVAGSQENFVDEMNRIAQKLNLT 152 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +HF N G + + RD+ L+ RI DFP+Y H F K + N N + Sbjct: 153 KSHFSNVIGAQDKNQFMSIRDLITLTVRIFEDFPEYYHLFSKKDFKYNNIYQENINL-LS 211 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+ + +T A G+ + +A + + +I G R LL F Sbjct: 212 PDNRIDGIISIYTDAGGYGSIVAAKHEGRRIFILISGLKTEKERISEIKQLLDYAF 267 >gi|284047000|ref|YP_003397340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter woesei DSM 14684] gi|283951221|gb|ADB53965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter woesei DSM 14684] Length = 284 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 14/245 (5%) Query: 27 KLPYYT---LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 KLP ++ + D TG V+ + P S KLMTA V ++ L T Sbjct: 43 KLPPHSAAIVADARTGRVLYADRPHRRLLIGSTAKLMTALVAL-----ERTSLEDSFTAP 97 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A + S + + + L+ L+V S ND A+A+AE + +++ FV+ MN ++ Sbjct: 98 AYAGDPTESRVGLGTDEQLLVGDLLRGLLVVSGNDAAIALAEGVAGSQEAFVELMNERAQ 157 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKK 199 LG+S T + N G+ G ++A D+ L+ ++ + + + + Sbjct: 158 ELGMSDTRYGNPIGL-DDGTSSSAADLVTLTRELRR-HDAFREIVASPSVTLSSGAVART 215 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN +G L DG+KTG T A+G+ +V SA +G +++I+ +LG R++ + +L Sbjct: 216 LENTNDLLGGPLAVDGVKTGHTKAAGYVLVGSATRGGRAVISAVLGTRSEADRDRATMTL 275 Query: 260 LSMGF 264 L G Sbjct: 276 LRHGL 280 >gi|327438154|dbj|BAK14519.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris StLB046] Length = 445 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 35/282 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D +TG ++ E + AS+TK+MT Y++ +KE ++ K + Sbjct: 45 LIDADTGKILYEQNAETALGIASMTKMMTEYLLLDAIKEGSISWDQEYNVTEYTYKVSQN 104 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T T+ + + + SAN +AIAE++ TEK+F++ M+ ++ LGL Sbjct: 105 RLLSNVPLRADGTYTIKELYEAMAIYSANAATIAIAETIAGTEKEFLKLMDKKAEELGLE 164 Query: 149 ATHFMNAHGV----VQHGH----------YTTARDMAILSWRIKTDFPQYMHYFQIKG-- 192 F+NA G+ +Q H AR +A L++ + D P+ + +I Sbjct: 165 NYKFVNATGLNNADLQGMHPEGTGEKDENVMPARSVAKLAYNLLKDHPEMLETAKIPKKV 224 Query: 193 -LEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 E +NW V + G DG+KTG T +G +A +GD LIAV++ Sbjct: 225 FREGTSDAISMSNWNFMLPGLVYEYEGVDGLKTGTTDFAGHTFTGTAKRGDTRLIAVVMK 284 Query: 246 ALDRN------TRNKVSASLLSMGF--YNKTDRKKINYIIKD 279 A+D N R +A L GF ++K + NY+ ++ Sbjct: 285 AVDSNGVGSYKARFDATAKLFDYGFGQFSKVELLPGNYVFEE 326 >gi|229155136|ref|ZP_04283248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228628263|gb|EEK84978.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] Length = 378 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|154684528|ref|YP_001419689.1| DacA [Bacillus amyloliquefaciens FZB42] gi|154350379|gb|ABS72458.1| DacA [Bacillus amyloliquefaciens FZB42] Length = 443 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ +KE K T E Sbjct: 46 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEISQD 105 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + + SAN A+A+AE L TE KFV MN +K LG++ Sbjct: 106 NSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAEMNAKAKELGMT 165 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F NA G+V HG +A+DMA+L+ R+ TD+P+ + I + Sbjct: 166 NYDFKNATGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIAKTK 225 Query: 195 IKGK-----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + PN N+ V + G DG+KTG T ++G ++A + +I V+L Sbjct: 226 FRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITVVLN 285 Query: 246 A 246 A Sbjct: 286 A 286 >gi|281357416|ref|ZP_06243904.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis vadensis ATCC BAA-548] gi|281316019|gb|EFB00045.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis vadensis ATCC BAA-548] Length = 391 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 21/247 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T +V+ E AS+ K+MT V F L++ A+ L +P+ I+K A P Sbjct: 144 MVDLTTRNVLWEKNSTAKVPIASMVKMMTLLVTFEELEKNPAISLESPVQITKTALAVPR 203 Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + T L + LK + +KSAND AV +AE + FV MN ++ LG++ + Sbjct: 204 TGVVWLDPRETFPLSDLLKAVTIKSANDAAVQVAEFIGGDVDSFVNRMNLRAQTLGMTNS 263 Query: 151 HFMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----------G 197 HF++ G+ + + ARDM +L+ ++ ++P M + K I+ Sbjct: 264 HFVSPCGLPDKKKGNSLSCARDMVVLAEQL-LEYPDVMRWSTTKQDFIREGEKKTMLTTT 322 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K N W G DG+KTGF ASG+ + S ++ + ++ + G R++ S Sbjct: 323 NKLVNPRWP-----GVDGLKTGFINASGYCLTFSVLRDGRRIVGCVTGFKSARDRDRFSR 377 Query: 258 SLLSMGF 264 L+ G+ Sbjct: 378 KLIDWGY 384 >gi|312127658|ref|YP_003992532.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] gi|311777677|gb|ADQ07163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] Length = 374 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 17/258 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP + ++ TG ++ E D AS Sbjct: 4 RAFVLVFALIITTTFGKICYANEKKNLPQVSSKSAIAIEWVTGKILFEKNKDLKLPMAST 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V + + I I A P S+ +KG + + + L L++ S Sbjct: 64 TKIMTAILVL-----ENCDVNKEIEIPLQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV+ MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 119 NDAAVALAIATAGDVKRFVKLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLAKLAAY 178 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 179 AMRN-PIFRQIVKTTEREVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 237 Query: 231 SAIQGDQSLIAVILGALD 248 S + D +I V+L A D Sbjct: 238 SVCRDDFRVICVVLNAPD 255 >gi|221632531|ref|YP_002521752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum DSM 5159] gi|221157198|gb|ACM06325.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum DSM 5159] Length = 549 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 29/279 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L+I+A+A+ + + LP ++ ++D TG ++AE P ASLTK+ Sbjct: 12 LLIVALAIPIPV-------RADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTKV 64 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA V ++ L P+TI S++ + G +TL L L+++S ND Sbjct: 65 MTAVVAL-----ERGALDQPVTIVPE-DLIGESSAGLRAGQVVTLRTLLYGLLLRSGNDA 118 Query: 120 AVAIAESLCKT--------EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 A+AIA ++ + ++FV MN + LGL AT F N HG+ + GH ++A D+A Sbjct: 119 AMAIARAVGGSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDLA 178 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 L+ R+ P ++ F +G + +TN + G G KTG+T +G ++ Sbjct: 179 RLT-RVALADPVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLIEV 237 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 A + ++ I V+ G+ + +A LL G + K DR Sbjct: 238 AERAGKTAIVVLTGSTLAAWYDD-AAKLLDYG-WTKLDR 274 >gi|313901633|ref|ZP_07835069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313468095|gb|EFR63573.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 521 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 23/242 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ P PAS TK++TA V F L +T+S++A+ S Sbjct: 190 LMDQASGQVLFARNPHQRRAPASTTKILTAIVALEF-----GNLDDVVTVSEHAAATEGS 244 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +L L L+++S ND AVAIAE + +E F + MN T+ LGL THF Sbjct: 245 TMDLVAGERYSLRELLWGLMLESGNDAAVAIAEHIAGSEAAFARLMNETALRLGLRDTHF 304 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKG-----KKYPN 202 N HG+ H+T+A D+A++ T + YF Q + + +G + + Sbjct: 305 TNPHGLHDPAHFTSAYDLAVM-----TRYALANDYFARLVCQPEKVLCRGDGDWVRILSS 359 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + G+KTG T A+G +V+S + LIAV+ LD R S +LL Sbjct: 360 TNRLLWYHEWIRGVKTGTTGAAGPCLVSSGELEGRRLIAVV---LDSGDRWADSRALLEW 416 Query: 263 GF 264 GF Sbjct: 417 GF 418 >gi|229543957|ref|ZP_04433016.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] gi|229325096|gb|EEN90772.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] Length = 373 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 23/281 (8%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASL 56 M+++ + A+A+L S + P + A+T + + L+D +TG ++ E P + AS+ Sbjct: 1 MKRYFLYAALAVLVFSALPPGAAAADTPSVQAKSAILMDQDTGRILYEKDAYEPRSIASI 60 Query: 57 TKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA V K +K+A+++ ++ +S Y K G + + + L+++S Sbjct: 61 TKIMTALVAIESGKMDKEAVVSNRAVRTEGSSLY------LKPGDKWKMKDLVYGLMLRS 114 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAIL 173 ND A IAE++ + + FV MN +K +G+ THF N +G+ G HY+TA DMA+L Sbjct: 115 GNDAANVIAENVGGSIEGFVFMMNEKAKEIGMHDTHFANPNGLEDPGGRHYSTAYDMALL 174 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 +K Q + +I G + K + N N + + G KTG+T A+ +V +A Sbjct: 175 ---MKYAM-QNKEFRKITGTKFY-KGWRNKNRLLTEKYRYCTGGKTGYTKAARRTLVTTA 229 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G ++LIAV L D + ++ GF ++ DRK+I Sbjct: 230 TKGGENLIAVTLNDSDDWDDH---IAMYEYGF-SQYDRKRI 266 >gi|167748674|ref|ZP_02420801.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662] gi|167651988|gb|EDR96117.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662] Length = 374 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ D PAS+TK++T V E L + + S++A Sbjct: 52 LMDAKTGKILYAKNIDKKSYPASITKILTTLVAI----ENNDDLYSTVKFSRHAVNSIEP 107 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST K G + L + L ++++SAN+ +AE + +KF MN +K +G Sbjct: 108 GSTHIGIKAGEEIPLMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKG 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGL--EIKGKKYP 201 +HFMN +G+ HY TARDMA+++ + P + HYF + G E KG++ Sbjct: 168 SHFMNPNGLHNDKHYVTARDMALIT-KAALQNPMFRKIACSSHYF-MSGTNKEKKGRELW 225 Query: 202 NTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + V + G +G KTG+T +G +V A +GD LI+VIL Sbjct: 226 NHHKMVKQTMFLYKGVEGGKTGYTTRAGGTLVTFAKRGDTELISVIL 272 >gi|46205327|ref|ZP_00209803.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 261 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 72/127 (56%) Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN T+ +G+ + + N +G+ + +T+ARDMAIL+ + DFP F I ++ Sbjct: 2 MNETAHKIGMRESRWYNPNGLPEPRQWTSARDMAILARALMRDFPDQQGLFSISAIQYGK 61 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N +G + GADGMKTGF C+ GFN+VA+A + + +I V++G R+ +A Sbjct: 62 AVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRNGRRIITVVMGQPSARERDIKAA 121 Query: 258 SLLSMGF 264 L GF Sbjct: 122 DLFDYGF 128 >gi|21909749|ref|NP_664017.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315] gi|21903933|gb|AAM78820.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315] Length = 393 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + L V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|229074761|ref|ZP_04207780.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] gi|228708359|gb|EEL60513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] Length = 378 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|229102172|ref|ZP_04232882.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228681242|gb|EEL35409.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 378 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKKYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|206971597|ref|ZP_03232547.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|229070033|ref|ZP_04203307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|229079727|ref|ZP_04212260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|206733582|gb|EDZ50754.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|228703567|gb|EEL56020.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228713088|gb|EEL64989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] Length = 338 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ ++ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|255305505|ref|ZP_05349677.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC 43255] Length = 409 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 37/289 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P + L+D T ++ E D ASL+K+M Sbjct: 8 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 66 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 67 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ +H + +TA D+ Sbjct: 127 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 186 Query: 171 AILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L + Y HY Q+ K + NTN + + G DG+KTG+T Sbjct: 187 VTLGKYM------YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYT 240 Query: 222 CASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G+ + S + + LI V+LG ++ R SASLL G Sbjct: 241 DNAGYCLAFSMMVPKDAKNERSHRLIGVVLGDGNKKNRISSSASLLKYG 289 >gi|229090529|ref|ZP_04221765.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|228692796|gb|EEL46519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 310 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 123/254 (48%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + K K+ +L +S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAESGKMKERVL-----VSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|164687904|ref|ZP_02211932.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM 16795] gi|164602317|gb|EDQ95782.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM 16795] Length = 399 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 24/284 (8%) Query: 7 IIAMAMLSNIFPF-LSIAETNKLPYY---TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ ++++ NIF +S+A N Y L+D T + E PD ASL+K+MT Sbjct: 11 VLLLSIILNIFTTSISLAYDNIDRYSKGSILIDQLTNRTLYEKNPDKKMPLASLSKMMTF 70 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +KE K I I + ++ S+ K G + L + L++ S ND A+A Sbjct: 71 LIAIESIKEGKVKENDIIEIDQEIAKVKGSSYKLKVGEKVPLIELMNGLMIVSGNDAAIA 130 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------HYTTARDMAI 172 IA+ + + FV+ MN +K LG+ T F+N +G+ + + +T RD++I Sbjct: 131 IAKHIGGSVDDFVKIMNKKTKELGMKNTSFVNPNGLPIYSLKEPSKPPKENISTPRDISI 190 Query: 173 LSWRIKTDFPQYMHYF---QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 L+ + ++ + + Q+ +G NTN + DG+KTG+T +G+ + Sbjct: 191 LAKYMFDNYEKEVTSITDKQVYSYPERGFCKNNTNVLLQLIPDVDGVKTGYTGNAGYCLC 250 Query: 230 ASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 S D LI V+LG +N R + S SLL G N Sbjct: 251 FSMKTHKDDKNDCDNRLIGVVLGTNHKNKRTQASMSLLEYGKQN 294 >gi|300119331|ref|ZP_07057009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] gi|298723286|gb|EFI64050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] Length = 338 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + + +L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEETSIQSDTLSKLMTEYIVLEQLNKGNIQLDEVVQISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SA 149 P T K +T+ + L L++ N +A+AE + E F Q MN +K L L Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLPQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++ L+ R+ TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|28895131|ref|NP_801481.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes SSI-1] gi|28810376|dbj|BAC63314.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes SSI-1] Length = 374 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 17 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 76 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + L V S+N V IA L + F+ Sbjct: 77 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDASAFI 136 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 137 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 196 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 197 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 253 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 254 MITAKRGKTRLITIVMGVGDWSDQN 278 >gi|308171901|ref|YP_003918606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM 7] gi|307604765|emb|CBI41136.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus amyloliquefaciens DSM 7] gi|328551709|gb|AEB22201.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens TA208] Length = 443 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 35/280 (12%) Query: 2 RQFLV-IIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 +Q LV ++ +A+ + F +S AE +++ ++G ++ D Sbjct: 7 KQMLVSLVVLALTATCFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS----TFKKGSTMTLDNALK 109 AS+TK+MT Y++ +KE K T E NS +K T+ + Sbjct: 67 ASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQ 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY-- 164 + + SAN A+A+AE L TE KFV MN +K LG++ F N+ G+V HG Sbjct: 127 AMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKELGMTNYDFKNSTGLVNEDLHGKQPQ 186 Query: 165 ---------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWA---- 206 +A+DMA+L+ R+ TD+P+ + I + + PN N+ Sbjct: 187 GEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGL 246 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 V + G DG+KTG T ++G ++A + +I V+L A Sbjct: 247 VSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITVVLNA 286 >gi|229096060|ref|ZP_04227034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|229115016|ref|ZP_04244427.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228668432|gb|EEL23863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228687352|gb|EEL41256.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 378 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|118443151|ref|YP_878109.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118133607|gb|ABK60651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 375 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 32/268 (11%) Query: 1 MRQFLVIIAMAMLSNI--FPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWN 52 +R +I+ + ++ NI P + E Y +D+ + V+ E + Sbjct: 4 LRTISIILNICLIFNIAFVPSIEATEPKNNSIYVDARCAIAMDSKSKCVLYEKNAEMLVP 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS TK+MT V + L T +S A+ S +KKG ++L L L+ Sbjct: 64 IASTTKIMTTLVALKY-----GNLDTKYEVSPKAASIRGSKVGYKKGEQISLKELLYGLM 118 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D+A Sbjct: 119 LRSGNDAAITIAEGISGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLAR 178 Query: 173 LSWRIKT-----------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 ++ + K D + H F + Y N N + A+G+KTG+T Sbjct: 179 ITAKAKENKLFNEIVGVKDIDEKQHGFT--------RSYHNINKILYQIPNANGVKTGYT 230 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDR 249 +G +V S + D +I V+L R Sbjct: 231 GGAGKCLVTSVKEDDDDVIIVVLNCTPR 258 >gi|196047683|ref|ZP_03114887.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB108] gi|225862066|ref|YP_002747444.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB102] gi|196021468|gb|EDX60171.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB108] gi|225789232|gb|ACO29449.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB102] Length = 439 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 35/300 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGH 163 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ QH Sbjct: 127 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 186 Query: 164 YT--------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV--- 207 T ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 187 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 247 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 306 >gi|134299463|ref|YP_001112959.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134052163|gb|ABO50134.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 388 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 29/254 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +L++ +G V E D PASLTK+MTA + +K L +T+ + A+ Sbjct: 41 SLMEVESGKVYFEKDGDKRREPASLTKVMTAILAI-----EKGNLKDVVTVQQRAARVSM 95 Query: 92 SNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G + L++ LK ++ SAND VAI E + + +FV+ MN + LGL T Sbjct: 96 GQDIGLNIGDRLYLEDLLKAALMYSANDSTVAIGEHIGGSHDQFVKMMNEKAVALGLKNT 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSW------------RIK----TDFPQYMHYFQIKGLE 194 HF N +G HYTTA D+A L+ R K T P+ K E Sbjct: 156 HFANTNGFHHPNHYTTANDLAKLTCYALQNKTFAEFVRTKEATITWLPKETAVKTGKKSE 215 Query: 195 ---IKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 +K + NTN + + F G +G+KTG T +G ++ASA + + L+ VIL + N Sbjct: 216 AETVKQRVLRNTNRLLRSDFEGINGVKTGTTPRAGNCLIASATREGRQLVVVILHS---N 272 Query: 251 TRNKVSASLLSMGF 264 R + LL GF Sbjct: 273 NRWNDATRLLEYGF 286 >gi|289422674|ref|ZP_06424514.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus anaerobius 653-L] gi|289156853|gb|EFD05478.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus anaerobius 653-L] Length = 423 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 20/240 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++DT + ++ E P ASL+K+MT + F LK +K + + I + + Sbjct: 44 VVDTKSDRIVYEKDSLTPTAMASLSKMMTLLITFDDLKARKVSMHDQVKILASDVNRDGT 103 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N +G + LD L +++ SAND A+AIA + K FV+ MN+ + +G++ T F Sbjct: 104 NMKLNEGDIVGLDVLLDSMMIISANDSALAIARHVGGDYKTFVKRMNDKASEIGMTKTVF 163 Query: 153 MNAHGVVQHG----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 N +G+ +G + T ARD+AILS + ++ + + K + KK Sbjct: 164 YNPNGLPIYGEKYGKKITYENTTCARDVAILSKFLYDNYEKELTNITSKKRFVNTKKQID 223 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILGALDRNTR 252 NTN + F +DG+KTGFT +G+ + S+ D LI V +GA + R Sbjct: 224 EENTNPILPLFKESDGLKTGFTDKAGYCLAYSSRTNRGGENDVDNRLIGVSMGAPSKEAR 283 >gi|228952885|ref|ZP_04114953.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806795|gb|EEM53346.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 307 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ ++ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|118475787|ref|YP_892938.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str. Al Hakam] gi|229182408|ref|ZP_04309661.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|118415012|gb|ABK83431.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] gi|228601054|gb|EEK58621.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 444 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 35/300 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGH 163 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ QH Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 191 Query: 164 YT--------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV--- 207 T ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311 >gi|224477927|ref|YP_002635533.1| penicillin binding protein 4 [Staphylococcus carnosus subsp. carnosus TM300] gi|222422534|emb|CAL29348.1| penicillin binding protein 4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 409 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 132/267 (49%), Gaps = 29/267 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSN 93 T G ++ + + + +PAS TKLMT Y+V +++ K + + I+ + + P+ Sbjct: 53 TQQGQILYDYHGNQSIDPASTTKLMTVYLVLEAIEQGKIKPSDSVKITPSYEKLAQLPNL 112 Query: 94 STF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +TF K T T+D LK +++S+N + +A+ L KF +MN +K LG+ +H Sbjct: 113 TTFPLKNKQTYTIDQLLKQAMLESSNAATLVLADKLSGDTSKFTDNMNAKAKELGMKHSH 172 Query: 152 FMNAHG----VVQH----------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F N G ++Q ++TA+DM ILS I ++P+ + Y +K + G Sbjct: 173 FTNPSGANNLLIQQFAPKAYKSETFSHSTAQDMTILSKAIIKNYPKVLQYSSLKTDQQYG 232 Query: 198 KKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------L 247 KK NTN ++ GA G+KTG T +G+N+V + + + + ++ Sbjct: 233 KKLTNTNLSLPGSQDALNGAQGLKTG-TSDNGYNLVLTTKRNNLRIDTTVMNVQPYPSET 291 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ R K++ +L + + RK I+ Sbjct: 292 SKHARQKIANALTEDAYKHYEYRKVIS 318 >gi|300854319|ref|YP_003779303.1| D-alanyl-D-alanine carboxypeptidase-like protein [Clostridium ljungdahlii DSM 13528] gi|300434434|gb|ADK14201.1| D-alanyl-D-alanine carboxypeptidase related protein [Clostridium ljungdahlii DSM 13528] Length = 367 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 11/195 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MT V + K L + IS ++ S +KKG ++TL L L++ Sbjct: 66 ASTTKIMTVLVAIKYGK-----LDEKVQISSRSAGIRGSVVGYKKGESITLKELLYGLML 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+AI+E + + ++FV+ MN + +G+ THF HG+ + HYTTA D+A+L Sbjct: 121 RSGNDAAIAISEGVSGSVEEFVKLMNEYASEIGVINTHFKTPHGLDKEEHYTTAYDLAVL 180 Query: 174 SWRIK--TDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + K T F + + + G + G + Y N N + A+G+KTG+T +G +V Sbjct: 181 TSIAKNNTLFNEIVSSKDVDGPQ-NGFTRSYHNINKILWKIPDANGVKTGYTGKAGKCLV 239 Query: 230 ASA-IQGDQSLIAVI 243 S +QG+ +I V+ Sbjct: 240 TSTKVQGNDVIIVVL 254 >gi|161138122|gb|ABX58032.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum brasilense] Length = 276 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 77/140 (55%) Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L +E KF + M ++ G+ T F N++G+ TTAR +ILS + +D +Y Sbjct: 1 EALGGSEAKFAEMMTRKAREXGMRNTVFXNSNGLPNMQQVTTARXFSILSRAMLSDHSRY 60 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF + G+ N N + + G DG+KTG+T ASGFN+ ASA++ + L+AV+L Sbjct: 61 YPYFSRRAFVYGGRSLNNHNRLMSRYEGMDGIKTGYTVASGFNLAASAVRDGRRLVAVVL 120 Query: 245 GALDRNTRNKVSASLLSMGF 264 G +R+ ++L F Sbjct: 121 GGKSAASRDARMEAILDKAF 140 >gi|42780668|ref|NP_977915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|42736588|gb|AAS40523.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] Length = 374 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAE-TNKLPYY--TLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ T+ + L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|260682216|ref|YP_003213501.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260685815|ref|YP_003216948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260208379|emb|CBA60888.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260211831|emb|CBE02232.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] Length = 414 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 37/289 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P + L+D T ++ E D ASL+K+M Sbjct: 13 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 72 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ +H + +TA D+ Sbjct: 132 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 191 Query: 171 AILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L + Y HY Q+ K + NTN + + G DG+KTG+T Sbjct: 192 VTLGKYM------YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYT 245 Query: 222 CASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G+ + S + + + LI V+LG ++ R SA+LL G Sbjct: 246 DNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG 294 >gi|71902908|ref|YP_279711.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] gi|71802003|gb|AAX71356.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] Length = 393 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|94987880|ref|YP_595981.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|94541388|gb|ABF31437.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYTFLRK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|15895327|ref|NP_348676.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15025043|gb|AAK80016.1|AE007708_12 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325509472|gb|ADZ21108.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 351 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 116/249 (46%), Gaps = 12/249 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 I +A++ I + A+ +KL +D+NT ++ E D AS TK+MT+ Sbjct: 7 IVLALIVCILTPATFAKADKLNLNARCAIAIDSNTKMILYEKNADMIVPMASTTKIMTSL 66 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V + L TISK A+ S +K G +TL L L+++S ND A+ I Sbjct: 67 VAIKY-----GNLDKKFTISKKAASIRGSKVGYKAGEEITLRELLYGLMLRSGNDAAICI 121 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--F 181 AE + +KF MN + +G +HF HG+ + HY TA D+A ++ K + F Sbjct: 122 AEGIAGNTEKFADLMNEYAYKIGAFNSHFQTPHGLDKDLHYCTAYDLAFITSVAKENKVF 181 Query: 182 PQYMHYFQI-KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + G + Y N N + GADG+KTG+T +G +V+S +I Sbjct: 182 NDIVSSKDVGSGQYGFTRSYHNINKILYQIPGADGVKTGYTGNAGKCLVSSVKMNGHDVI 241 Query: 241 AVILGALDR 249 V+L R Sbjct: 242 FVVLNCTPR 250 >gi|126698096|ref|YP_001086993.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630] Length = 414 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 37/289 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P + L+D T ++ E D ASL+K+M Sbjct: 13 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 72 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ +H + +TA D+ Sbjct: 132 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 191 Query: 171 AILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L + Y HY Q+ K + NTN + + G DG+KTG+T Sbjct: 192 VTLGKYM------YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYT 245 Query: 222 CASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G+ + S + + + LI V+LG ++ R SA+LL G Sbjct: 246 DNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG 294 >gi|254974115|ref|ZP_05270587.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-66c26] gi|255091514|ref|ZP_05320992.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP 107932] gi|255313242|ref|ZP_05354825.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-76w55] gi|255515932|ref|ZP_05383608.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-97b34] gi|255649025|ref|ZP_05395927.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-37x79] gi|306519141|ref|ZP_07405488.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] Length = 409 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 37/289 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P + L+D T ++ E D ASL+K+M Sbjct: 8 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 66 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 67 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ +H + +TA D+ Sbjct: 127 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 186 Query: 171 AILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L + Y HY Q+ K + NTN + + G DG+KTG+T Sbjct: 187 VTLGKYM------YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYT 240 Query: 222 CASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G+ + S + + + LI V+LG ++ R SA+LL G Sbjct: 241 DNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG 289 >gi|255099621|ref|ZP_05328598.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-63q42] gi|328887546|emb|CAJ67349.2| D-alanyl-D-alanine carboxypeptidase, S11 peptidase family [Clostridium difficile] Length = 409 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 37/289 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P + L+D T ++ E D ASL+K+M Sbjct: 8 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 66 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 67 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ +H + +TA D+ Sbjct: 127 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 186 Query: 171 AILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L + Y HY Q+ K + NTN + + G DG+KTG+T Sbjct: 187 VTLGKYM------YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYT 240 Query: 222 CASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G+ + S + + + LI V+LG ++ R SA+LL G Sbjct: 241 DNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG 289 >gi|209558810|ref|YP_002285282.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131] gi|209540011|gb|ACI60587.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|206978265|ref|ZP_03239143.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217959045|ref|YP_002337593.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|222095199|ref|YP_002529259.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|206743514|gb|EDZ54943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217067033|gb|ACJ81283.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|221239257|gb|ACM11967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 374 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAE-TNKLPYY--TLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ T+ + L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|225864539|ref|YP_002749917.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB102] gi|229184786|ref|ZP_04311979.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|225790611|gb|ACO30828.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102] gi|228598690|gb|EEK56317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] Length = 338 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + D A+L+KLMT Y+ L E K L + IS +E Sbjct: 40 LIDANSGEVVFKKNEDISIQSATLSKLMTEYIAMEQLHEGKIQLDELVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L + N A+A+AE + E F MN +K L LS Sbjct: 100 PIQVTSKDKTTVR--DLLHALFLTGNNRSALALAEHIAGNEDNFTILMNEKAKQLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA D+ L+ ++ DFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKQSNTTAIDVGKLATQLVKDFPNVLNITKLTSYQFTFKDSKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A +GD LI+VIL + + N+ + Sbjct: 218 KMIYSLNKNINLQGVDGLQTSFSTNGNYSFVSTAQRGDTRLISVILDSNEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|71910061|ref|YP_281611.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] gi|71852843|gb|AAZ50866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 50/320 (15%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRVNATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN------KVSASLLSMGFYN-KTDRKKINYIIKDFY 281 + +A +G LI +++G D + +N +L GF + KT KK Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQNGEFYIHPFVNALTEKGFKDSKTLSKKA-------- 324 Query: 282 QQNLSNEVPNISEEVCTTQK 301 +Q L VP +E + Q+ Sbjct: 325 RQKLEKLVPQTKKETSSKQQ 344 >gi|255020045|ref|ZP_05292118.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254970574|gb|EET28063.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 381 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 111/216 (51%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D TG ++A P PASLTKLMTAY+ + L + + I +S A Sbjct: 40 YVLMDFRTGAILAAKNPQLQLPPASLTKLMTAYLSYEALADGRLRWHERIPVSTVAWHTG 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ + +T+D + LI+ S ND AVA+A+++ + FV MN T+ LGL+ Sbjct: 100 GSSMFIQPNLPVTVDQLMHGLIIDSGNDAAVALAQAVAGSRAAFVDEMNATAAQLGLTGA 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 H+ + G+ G + +A ++A LS + +PQ + +I+ + N A+ Sbjct: 160 HYTDVDGLPHPGLHLSAMNIAELSRDLIARYPQVLQISRIQYYRYNHITQRSWNPALFGH 219 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T A+G + + + + LIAV++GA Sbjct: 220 PHVDGLKTGHTQAAGHCMDTTIDRHGRRLIAVVMGA 255 >gi|50913624|ref|YP_059596.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] gi|50902698|gb|AAT86413.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|229178878|ref|ZP_04306238.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228604643|gb|EEK62104.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] Length = 338 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D A L+ ++ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A GD LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|19745419|ref|NP_606555.1| DD-carboxypeptidase [Streptococcus pyogenes MGAS8232] gi|19747530|gb|AAL97054.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS8232] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|295109007|emb|CBL22960.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 415 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 14/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG V+ + AS TK+MT L + + L +T SK A+ PS Sbjct: 179 LINADTGKVLYSKNENLRHANASTTKIMTC-----ILALENSSLNDKVTFSKKAASVEPS 233 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T + + L L+V S ND A+AIAE + + F Q MN ++ LG + THF Sbjct: 234 KLYAKAGETFYMRDLLYSLMVPSHNDTAIAIAEHISGSTSAFAQLMNKKARELGCTNTHF 293 Query: 153 MNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---KKY---PNTNW 205 + +G+ HYTTA D+AI++ R P + K K K+Y TN Sbjct: 294 VTPNGLDAGLNHYTTASDLAIIA-RYAIQNPTFQKLINTKSYSFKSLNTKRYFTVATTNA 352 Query: 206 AVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +GT G G+KTG T +G+ V + + I+V LG R + S LL+ + Sbjct: 353 LLGTQTGVVGLKTGVTNKAGYCFVGLCRSRKGNTYISVTLGGPTSAARWRDSKILLTYAY 412 >gi|229138262|ref|ZP_04266857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|229195769|ref|ZP_04322529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228587666|gb|EEK45724.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228645154|gb|EEL01391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 378 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAE-TNKLPYY--TLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ T+ + L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTA-----LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 239 SKDGLDLIVVTLSA 252 >gi|94993640|ref|YP_601738.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10750] gi|94547148|gb|ABF37194.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10750] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|306828007|ref|ZP_07461273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] gi|304429788|gb|EFM32831.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|94989756|ref|YP_597856.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10270] gi|94543264|gb|ABF33312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10270] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|258514292|ref|YP_003190514.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] gi|257777997|gb|ACV61891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] Length = 409 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 10/197 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK++T + +K + I +S A+ +N ++G +TL + L L+ Sbjct: 57 PASTTKILTGIIAI-----EKGKMDDLIPVSWEAANTEGTNIGLQEGEKLTLRDLLYALL 111 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S+ND A AIAE K+ F MN +K +G +HF N HG+ HYTTA D+A+ Sbjct: 112 LSSSNDAAEAIAEHYGKSADNFAVMMNQKAKEIGAVHSHFTNPHGLPDEDHYTTAYDLAL 171 Query: 173 LS-WRIKTD-FPQYMH--YFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFN 227 ++ + ++ D F + + I ++ +G+KY N N + + GA G+KTG+T A+G Sbjct: 172 IARYAMQNDKFREIVREKEITIARVDPEGQKYMVNHNKLLSRYEGAIGIKTGYTVAAGQC 231 Query: 228 IVASAIQGDQSLIAVIL 244 I A + D+ LIAV+L Sbjct: 232 IAAEVKRDDRELIAVVL 248 >gi|255656482|ref|ZP_05401891.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-23m63] gi|296450072|ref|ZP_06891834.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296878453|ref|ZP_06902459.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296261080|gb|EFH07913.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296430537|gb|EFH16378.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 429 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 28/236 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ + PAS TK+ TA +V +K+ L I I KN + S Sbjct: 40 LMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVKD----LNQVIEI-KNLPQIDGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATH 151 + K+G + T+ L L+V SAND A +A + + +KF+ MN+ +K +G + TH Sbjct: 95 SMYLKEGESFTVKQLLNALLVHSANDAAFVLARYVGGGDVQKFIDLMNSEAKKIGATNTH 154 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGT- 209 F N HG+ HYTTA DMA+++ R + + + K L+ + K YP + V T Sbjct: 155 FNNPHGLPDPNHYTTAHDMALIA-REAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTN 213 Query: 210 -FLGA------------------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 FL + DG+KTG+T A+G +++SA++ + +I + + Sbjct: 214 KFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCLLSSAVKDGRRVIVAVFNS 269 >gi|218897511|ref|YP_002445922.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|218543059|gb|ACK95453.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] Length = 338 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ GV TTA D+A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGVNNDTNKQSTTTAIDVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A D LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|229166411|ref|ZP_04294167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228616985|gb|EEK74054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 382 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 9 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQGSGRVLYGKAEHEPQKIASI 68 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 69 TKIMTA-----LLAAESGKMKEMVAVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 124 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 183 KYAMGNETFKGIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 242 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 243 SKDGLDLIVVTLSA 256 >gi|139473104|ref|YP_001127819.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] gi|134271350|emb|CAM29568.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] Length = 393 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 35/265 (13%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIIAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTD 180 +N T+K LG++ THF NA G G+Y TTARD++ L + Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKK 215 Query: 181 FPQYMHYFQIKGLE-IKGKKY-----------PNTNWAVGTFLGADGMKTGFTCASGFNI 228 +P+ + + + + G Y P+ + + G DG+KTG + ++ FN Sbjct: 216 YPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMK---GVDGLKTGSSPSAAFNA 272 Query: 229 VASAIQGDQSLIAVILGALDRNTRN 253 + +A +G LI +++G D + +N Sbjct: 273 MITAKRGKTRLITIVMGVGDWSDQN 297 >gi|218132659|ref|ZP_03461463.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC 43243] gi|217992385|gb|EEC58388.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC 43243] Length = 436 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 24/250 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 L+D +TG ++ E PAS TK+MT S L + + L IT SK N+ ++ Sbjct: 35 LIDADTGAILYEKDCHSRAYPASTTKIMT-----SLLAIENSSLDDVITFSKAAANSYKW 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +N+ ++G T++ AL ++KSAN++A I E + + F MN ++ LG Sbjct: 90 DEANTGTREGEQFTMEQALYATLLKSANEVAYGIGEYIAGSIPAFSDMMNERARELGALN 149 Query: 150 THFMNAHGVVQHGHYTTARDMAI-------------LSWRIKTDFPQYMHYFQIKGLEIK 196 THF N +G+ HYTTA D+A+ +S + P + + + Sbjct: 150 THFNNPNGLSDTNHYTTAYDLAMIGRACFNNSTFMTISSSVNYSIPPTNKTAETRYFRQR 209 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + + F G KTGFT SG+ ++ A + D LI V+ D +R S Sbjct: 210 HGMANSNGYQYEYFKGG---KTGFTDESGYTLITFAQKDDMRLICVVFRESDDASRYVDS 266 Query: 257 ASLLSMGFYN 266 +L GF N Sbjct: 267 KALFDYGFNN 276 >gi|296449308|ref|ZP_06891091.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296880760|ref|ZP_06904710.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296261835|gb|EFH08647.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296428255|gb|EFH14152.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 414 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 36/278 (12%) Query: 16 IFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 I P + A+T +P + L+D T ++ E D ASL+K+MT + + + Sbjct: 23 ITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFLLAIEAIDK 82 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + T + I K+ + S K G ++L ++ L++ S ND A+AIA+ + KTE Sbjct: 83 NQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAALAIAKHIGKTE 142 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDMAILSWRIKTDF 181 K FV MN ++ +G+ T++ N +G+ +H + +TA D+ L + Sbjct: 143 KNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAHDIVTLGKYM---- 198 Query: 182 PQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 Y HY Q+ K + NTN + + G DG+KTG+T +G+ + S Sbjct: 199 --YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAFSM 256 Query: 233 I-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + + LI V+LG ++ R SASLL G Sbjct: 257 MIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYG 294 >gi|311028943|ref|ZP_07707033.1| D-alanyl-D-alanine carboxypeptidase dacA [Bacillus sp. m3-13] Length = 459 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 134/281 (47%), Gaps = 40/281 (14%) Query: 4 FLVIIAMAMLSNIFPFLSI-AETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLT 57 F+ ++ + ++ +IFP S AE N L++ +TG +I + D AS+T Sbjct: 9 FVGLLVLTLMVSIFPGKSAQAEENDFLNINAKAAILIEFSTGKIIYQKNVDEALPVASMT 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPP-SNSTFKKGSTMTLDNALKLLI 112 K+MT Y++ +++ K + + +S A +YP SN +K T+ + + Sbjct: 69 KMMTEYLLLEAIEDGKLDWSKEVILSDYAQAISQKYPELSNVPMRKQEPYTIKELYEAMA 128 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA----------HGVVQHG 162 + SAN +A+AE++ +E KFV+ MN ++ +GL +F+N+ GV H Sbjct: 129 IYSANGATIALAEAIAGSETKFVEMMNAKAEEIGLENYNFVNSTGLNNEDLAVGGVPMHP 188 Query: 163 HYT--------TARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGT 209 T +A+D A L+ R+ TD+P+ + I + PN N + T Sbjct: 189 EGTDANEETTLSAKDTARLAHRLLTDYPEILDTASIPFKVFREGTPDAIDMPNWNKMLFT 248 Query: 210 ------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F G DG+KTG T A+GFN +A + +I+V++ Sbjct: 249 EELKVQFEGIDGLKTGSTDAAGFNFTGTAERDGMRVISVVM 289 >gi|307243482|ref|ZP_07525633.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus stomatis DSM 17678] gi|306493126|gb|EFM65128.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus stomatis DSM 17678] Length = 655 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 126/269 (46%), Gaps = 37/269 (13%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 +T K Y L+D N+G V+ + PAS TK+ TA+ V KKA + Sbjct: 34 DTLKSKYMVLMDYNSGQVLYKKNATQKMYPASTTKIWTAFCVL-----KKAKNLDELVEI 88 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTS 142 K+ + S+ + G T+ L+ L++ S+ND+A +A+ + F+ +MN + Sbjct: 89 KDIPQIEGSSMYLENGEKFTVRELLESLLIHSSNDVAYVLAKHFGGGNPQDFINYMNEEA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----- 197 K G S THF N HG+ HYTTA DMAILS R+ P ++K + K Sbjct: 149 KKFGASNTHFNNPHGLPDTDHYTTAMDMAILS-RVAYGDPTISEIVKMKSVSFKASDRIK 207 Query: 198 --KKYPNTNWAVGT--------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + N+N + + + DG+KTGFT +G +V++A +G+ L+A Sbjct: 208 VERNLVNSNKFLTSSDTIDHKGKTIPIKYDIVDGIKTGFTDDAGNCLVSTAKKGNVRLMA 267 Query: 242 VIL----GALDRNTRNKVSASLLSMGFYN 266 + G+L ++R +L+ G N Sbjct: 268 NVFFAPGGSLYHDSR-----TLIDYGLDN 291 >gi|328909969|gb|AEB61565.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus amyloliquefaciens LL3] Length = 418 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ +KE K T E Sbjct: 21 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEISQD 80 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + + SAN A+A+AE L TE KFV MN +K LG++ Sbjct: 81 NSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKELGMT 140 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F N+ G+V HG +A+DMA+L+ R+ TD+P+ + I + Sbjct: 141 NYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIAKTK 200 Query: 195 IKGK-----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + PN N+ V + G DG+KTG T ++G ++A + +I V+L Sbjct: 201 FRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITVVLN 260 Query: 246 A 246 A Sbjct: 261 A 261 >gi|228957844|ref|ZP_04119584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801760|gb|EEM48637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 363 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K KK +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 GKMKKM-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|297587950|ref|ZP_06946594.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC 53516] gi|297574639|gb|EFH93359.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC 53516] Length = 394 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 135/268 (50%), Gaps = 19/268 (7%) Query: 6 VIIAMAMLSNIF-PFLSIAET-----NKL-PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +I M +L+ +F P LS A++ NK+ YYT+ + ++ N + P+ ASLTK Sbjct: 7 IIPLMLILAIVFQPALSKADSKLGFENKVNSYYTIEQDYSQELLNYN-ENKPYAIASLTK 65 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT +V + K L I I ++ S KKG +T+++ ++ +++ S ND Sbjct: 66 IMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEEVTVNDLIRGMMIVSGND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWR 176 A +A + KFV+ MN + L L + F +A G ++ + +A+D+A L+ Sbjct: 126 AADELAVKSEGSVAKFVERMNKKAAELELESAKFYSASGYPENDKENMMSAKDLAKLTTY 185 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASAI- 233 ++PQ ++Y + + L + +KY +G G DG KTG T +G+ ++ + Sbjct: 186 TINNYPQVLNYTKTQKLSMPSRKYEGVTTVPFLGKIEGVDGFKTGTTEKAGYCLITTMSL 245 Query: 234 ---QGDQSLIAVILGA---LDRNTRNKV 255 + +++V++GA DRNT K+ Sbjct: 246 KPNNPNNKVVSVLMGAPTKYDRNTYQKI 273 >gi|228901108|ref|ZP_04065313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228858534|gb|EEN02989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 338 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATH 151 T+ + L L++ N A+A+AE + E F MN +K L L + Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSP 159 Query: 152 FMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N+ G+ TTA D+A L+ R+ DFP ++ ++ + K + NTN Sbjct: 160 FLNSTGINNDTNKQSTTTAIDVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T F+ ++ V++A D LI+VIL A + N + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|228920278|ref|ZP_04083626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839477|gb|EEM84770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 363 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 57 LAAQSGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|255654539|ref|ZP_05399948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-23m63] Length = 409 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 36/278 (12%) Query: 16 IFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 I P + A+T +P + L+D T ++ E D ASL+K+MT + + + Sbjct: 18 ITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFLLAIEAIDK 77 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + T + I K+ + S K G ++L ++ L++ S ND A+AIA+ + KTE Sbjct: 78 NQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAALAIAKHIGKTE 137 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV-----VQHG-----HYTTARDMAILSWRIKTDF 181 K FV MN ++ +G+ T++ N +G+ +H + +TA D+ L + Sbjct: 138 KNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAHDIVTLGKYM---- 193 Query: 182 PQYMHY---------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 Y HY Q+ K + NTN + + G DG+KTG+T +G+ + S Sbjct: 194 --YDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAFSM 251 Query: 233 I-------QGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + + LI V+LG ++ R SASLL G Sbjct: 252 MIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYG 289 >gi|153811609|ref|ZP_01964277.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174] gi|149832350|gb|EDM87435.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174] Length = 414 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 39/283 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL--KEKKAMLTTP---ITISKNAS 87 L+D TG V+ D PAS+TK+MTA + L +K AM + IT + ++S Sbjct: 78 LVDMFTGAVLYSKNADKTQYPASITKIMTALLGCEKLNPSQKFAMTASAARSITETNSSS 137 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 Y ++ F T++ AL ++++SAN++ +A+AE + KKFV+ MN ++ LG Sbjct: 138 IYADTDEEF------TIEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQLGC 191 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWA 206 + THF N +G+ HYTTA DMA ++ R P + + + EI K+ T + Sbjct: 192 TNTHFNNPNGLPDEIHYTTASDMAKIA-RAAWFNPTFRKFASTQYYEIPPTNKFAETRYL 250 Query: 207 VG----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + + G G KTG+T A+G +V A + L++V+L ++ N + Sbjct: 251 LNHHKMMKNQAYAYNGVLGGKTGYTEAAGNTLVTYAKNDNTYLVSVVLQSV--NGAYSDT 308 Query: 257 ASLLSMGF--YNKTDRKKI------------NYIIKDFYQQNL 285 +LL GF +++T K + YI+KD+ L Sbjct: 309 KALLDYGFNNFSRTAVKDLPSKITRHLLPAEKYILKDYKDDTL 351 >gi|228996680|ref|ZP_04156317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228762999|gb|EEM11909.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 361 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 12 MLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M +++ P + A+ N + + L++ ++G V+ AS+TK+MTA L Sbjct: 1 MCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTA-----LL 55 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + + IS A S + G + L++ + L+++S ND A AIAE++ Sbjct: 56 AAESGKMKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVGG 115 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYF 188 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + F Sbjct: 116 SIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-RYAMGNETFRKIF 174 Query: 189 QIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K + K YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 GTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLN 234 Query: 246 A 246 A Sbjct: 235 A 235 >gi|228969874|ref|ZP_04130604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|228789827|gb|EEM37679.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 374 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 4 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 63 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHY-- 164 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ G++ Sbjct: 64 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 123 Query: 165 ---------TTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWA---- 206 +ARD AIL+ R+ DFPQ ++ +I K +G KYP N NW Sbjct: 124 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 183 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 184 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 243 >gi|307243700|ref|ZP_07525840.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus stomatis DSM 17678] gi|306492909|gb|EFM64922.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus stomatis DSM 17678] Length = 419 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 20/246 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 DT+T ++ E D ASLTK+MT + F + +KK +TI + +N Sbjct: 44 DTDTNRIVYEKNADQVVPMASLTKMMTLLLTFDAISQKKVDYKDIVTILPSDVNRVGTNI 103 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G ++L+ +K +++ SAND A+AI+ + T KFV+ MN +K +G+ T F N Sbjct: 104 KLTAGEQISLEELMKGMMIVSANDAALAISHHVSTTYSKFVEDMNAKAKEIGMENTVFYN 163 Query: 155 AHGV----------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---P 201 +G+ V + T+ARD+ +LS + +P + + KK Sbjct: 164 PNGLPTSINVGGKPVGVENKTSARDVLVLSKYLYDKYPNQLTAITNMSSYVNPKKAINEE 223 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAI----QGDQS---LIAVILGALDRNTRNK 254 NTN + DG+KTGFT A+G+ + S G+ S LI V LGA + R Sbjct: 224 NTNPLLPLIANVDGLKTGFTGAAGYCLAYSMKIDKGNGNDSANRLIGVSLGASSKENRKL 283 Query: 255 VSASLL 260 S + L Sbjct: 284 ASYNTL 289 >gi|149179839|ref|ZP_01858344.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1] gi|148852031|gb|EDL66176.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1] Length = 385 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 18/242 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG ++ +PAS+TK+ TA Y V +K L + +TISK A+E Sbjct: 37 MIDMETGTILYSKNAKRRMSPASITKVATAIYAV------EKGDLNSLVTISKEAAETEG 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSAT 150 S+ +G MTL L +++ S ND A AIAE L + ++F +++N + G T Sbjct: 91 SSVYLLEGEKMTLKQLLIGMMINSGNDAAAAIAEHLDGSVEQFSENINQFLEEKAGAKDT 150 Query: 151 HFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 HF N HG+ + HYTTA DMA++ S+ +K + + F +K + KG+ + T + Sbjct: 151 HFTNPHGLYEKDHYTTAEDMALITSYAMKNE--AFQDLFALKEIGWKGEGWNTTLYNHHK 208 Query: 210 FLGAD-------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 + + G K G+ S +V +A + S+ V+L A + ++ LL Sbjct: 209 MVKGEVVYPEVTGGKNGYVDESKHTLVTTASNENLSVAVVLLKAQSKTAAYNDTSVLLDY 268 Query: 263 GF 264 G Sbjct: 269 GL 270 >gi|150390405|ref|YP_001320454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149950267|gb|ABR48795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 377 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 42/265 (15%) Query: 21 SIAETNKLPYY------TLLDTNTGHVIA-ENYPDHPWNP-ASLTKLMTAYVVFSFLKEK 72 ++ N+ P++ L+D TG V+A +N+ H P AS TK++T + L Sbjct: 27 GLSAKNQAPHFPSSHAAILMDVETGRVLAGQNF--HEKMPMASTTKILTGLLAVENLPLD 84 Query: 73 KAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K + P + + +S Y SN K ++D + L+++S ND A AIA + + Sbjct: 85 KLISVNPKAVGVEGSSIYLESNERVK-----SID-LIYGLMLRSGNDAAEAIAYEISGSI 138 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR----------IKTDF 181 + F MN +K +G + T+FMN HG+ HYTTA D+++++ +KT+F Sbjct: 139 EDFATLMNQRAKEIGANNTNFMNPHGLHHDDHYTTAYDLSLITRAALKNVTFKEVVKTEF 198 Query: 182 PQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Q E +G K + N N + ++ ADG+KTG+T SG +VASA + I Sbjct: 199 WQ---------AEREGHKDFANKNKLLKSYESADGVKTGYTRRSGRCLVASATNNNMQFI 249 Query: 241 AVILG-ALDRNTRNKVSASLLSMGF 264 AV L + D NT + +LL GF Sbjct: 250 AVTLNDSDDFNT----TRTLLEYGF 270 >gi|317470930|ref|ZP_07930309.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|316901581|gb|EFV23516.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 374 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 21/227 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ D PAS+TK++T V E L + + S++A Sbjct: 52 LMDAKTGKILYAKNIDKKSYPASITKILTTLVAI----ENNDDLYSTVKFSRHAVNSIEP 107 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST K G + L + L ++++SAN+ +AE + +KF MN +K +G Sbjct: 108 GSTHIGIKAGEEIPLMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKG 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGL--EIKGKKYP 201 +HFMN +G+ HY TARDMA+++ + P + HYF + G E KG++ Sbjct: 168 SHFMNPNGLHNDKHYVTARDMALIT-KAALQNPMFRKIACSSHYF-MSGTNKEKKGRELW 225 Query: 202 NTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + V + G +G KTG+T +G +V A +G+ LI+VIL Sbjct: 226 NHHKMVKQTMFLYKGVEGGKTGYTTRAGGTLVTFAKRGETELISVIL 272 >gi|229109023|ref|ZP_04238624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|229126883|ref|ZP_04255895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228656823|gb|EEL12649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228674492|gb|EEL29735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] Length = 363 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 57 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|229043310|ref|ZP_04191030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|229144168|ref|ZP_04272582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228639176|gb|EEK95592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228726024|gb|EEL77261.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] Length = 363 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 2 MYASVMPIPTYAKINSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 57 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|304439141|ref|ZP_07399059.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372273|gb|EFM25861.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus duerdenii ATCC BAA-1640] Length = 437 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 8/220 (3%) Query: 25 TNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 TN+L L+ D TG ++ N D AS +KL++ YVV +K K L +TI Sbjct: 71 TNELAKTFLIGDYATGEILEFNDIDEVVAMASTSKLVSVYVVLDQIKAGKLKLDDMVTIP 130 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A P S+ K+G T T+ L +V S ND ++A + + + FV MN K Sbjct: 131 HEAEVLPGSSYKIKEGDTKTVKELLTAALVISGNDAITSLAIKVAGSTQAFVDMMNKKCK 190 Query: 144 NLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +LGL+ H +N G+ + + T R+M +L+ I + P+ + Y ++ + ++ Sbjct: 191 DLGLTNAHMINPTGLTDYSIEDYNKMTTREMFLLARYIMKEHPEILEYTKMPSIVEADRE 250 Query: 200 YP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GD 236 + +TN +G G+KTG+T A+G ++A+ ++ GD Sbjct: 251 FTAYSTNPILGVIPEIQGLKTGYTGAAGRCLIATELKPGD 290 >gi|257064043|ref|YP_003143715.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM 20476] gi|256791696|gb|ACV22366.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM 20476] Length = 464 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 33/275 (12%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 + G V E D AS+TK+MTA V + A L T +T+SK ++ S++ Sbjct: 85 DDGTVYYERNADQQHQIASITKIMTAIVAL-----ENADLNTEVTVSKASATVGESSANL 139 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAE--------SLCKTEKKFVQHMNNTSKNLGLS 148 K+G TM L AL L++ S ND +AIAE S + FV MN ++ LG + Sbjct: 140 KEGDTMDLRTALMCLLIPSGNDAGIAIAETVGTIMDPSASDPQAVFVSAMNAKAEELGCT 199 Query: 149 ATHFMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKK-YP 201 THF N HG+ +++ARD+ ++ R + + Q+ + + GK Sbjct: 200 NTHFTNPHGLDADKWGSDMHSSARDVVTMA-RYAMSYDTFAEIVQMGDTTVTVTGKDNKA 258 Query: 202 NTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 NW T + G G+KTG + + F +GD++ V+LG + R Sbjct: 259 RDNWLDATDDLLEEYEGMRGVKTGSSVLADFCFSGCVTRGDETFYTVVLGNATSDERFGD 318 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 + +L+ F + ++I DF +S E P Sbjct: 319 TITLMDWAFGSTV---HTDFINSDFV---ISEEDP 347 >gi|229089145|ref|ZP_04220429.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] gi|228694186|gb|EEL47865.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] Length = 444 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 35/300 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGH 163 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ +H Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGRHPE 191 Query: 164 YT--------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV--- 207 T ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311 >gi|295101852|emb|CBK99397.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii L2-6] Length = 319 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 106/237 (44%), Gaps = 25/237 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D +TG + E PD P ASLTK+MTA +V + A +T P +++ + Sbjct: 46 LFDADTGEALVEQNPDLPRCVASLTKMMTALLVLESGTDLSAGITIPASLTPELQSIRAN 105 Query: 93 NS---TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + G T+ + + +++ SAND A +A + F MN + LG +A Sbjct: 106 RGHTIGLQAGETVRRIDMMYAMLLPSANDAASVLAVDTSGSLAAFAAQMNVRASQLGCTA 165 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW---- 205 THF HG+ G+Y+TARDMA ++ D P Y QI + K P TN Sbjct: 166 THFTCPHGLYDGGNYSTARDMAKIALACYAD-PTYR---QIA--DTMSYKLPATNVHPAR 219 Query: 206 -----------AVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + A GMKTGFT +G V A Q + VILG+ +N Sbjct: 220 TVTTTNKLLQPGSGYYRSDAHGMKTGFTTQAGRCFVTFAQQDGHTYGLVILGSNSQN 276 >gi|325292852|ref|YP_004278716.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325060705|gb|ADY64396.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 390 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 12/252 (4%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 PF++ AE ++D TG V+ + + PASL KLMT V+ L + + Sbjct: 34 PFIAKAEQ-----AYMIDAETGTVLLSQNENQSFPPASLAKLMTVEVILDALAKGQVTPE 88 Query: 78 TPITISKNA---SEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 T +S+ A P ST S++++++ L +IV++AND + +AE + ++ Sbjct: 89 TAYPVSEYAWRTGGAPSRTSTMFAALKSSVSVNDLLTGIIVQNANDGCIIVAEGMAGSDS 148 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + M + LG++ + F N+ G+ G+ TTA+DM +L+ ++ +P F Sbjct: 149 AFAKRMTVRAGELGMNRSVFANSTGLPDPGNQTTAKDMVLLAQHLRDTYPDRYGLFTKPD 208 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 E N N +G G DG+ GF SGF V SA + + + + D TR Sbjct: 209 FEWNRIFQRNKNSLLGN--GIDGLGLGFAEGSGFAAVVSAEREGRRVYLALGSIADDKTR 266 Query: 253 NKVSASLLSMGF 264 + ++ G Sbjct: 267 QDEARRVVDWGL 278 >gi|229021621|ref|ZP_04178209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228739667|gb|EEL90075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] Length = 428 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 27/261 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 35 LVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYNISQD 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK GL Sbjct: 95 RSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEFGLK 154 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ GH+ +ARD+AIL+ R+ DFP+ + +I K + Sbjct: 155 NYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKISKKV 214 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G + PN NW + + G DG+KTG T +G + + I+V++ Sbjct: 215 FREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIK 274 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 275 TNSHTARFDETKKLYDYGFAN 295 >gi|255505895|ref|ZP_05348727.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255265270|gb|EET58475.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 625 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 38/265 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L+D +TG ++ + PAS+TK+MT + +K L+ +T S+NA EY Sbjct: 79 LMDADTGAILYAKSIEKQEYPASITKIMTTLIAL-----EKGNLSDVVTFSENAVYSIEY 133 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G +TL+ L +++ SAN+I+ A+AE + + FV MN ++ LG + Sbjct: 134 GSSHLGLTAGEELTLEQCLYGIMLASANEISNAVAEHIGGDIETFVGMMNEKAQELGCTN 193 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNW 205 THF+N HG+ HY A+DMA I+ +K + K EI G +P TN Sbjct: 194 THFVNVHGLHDENHYVCAKDMALIMQAALKNE----------KFREIIGTVEYNFPETNL 243 Query: 206 A--VGTFL--------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 V F+ G G K G+T + +V +A + ++I+V+L + Sbjct: 244 VDEVRYFINHHKMISEEGMLYDGCIGGKNGYTDEAWNTLVTAAERDGMTIISVVLRCPGQ 303 Query: 250 NTRNKVSASLLSMGFYNKTDRKKIN 274 + LL GF N D + N Sbjct: 304 YVSYDDTKVLLDYGFANFHDAQIAN 328 >gi|229161459|ref|ZP_04289440.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228621996|gb|EEK78841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 338 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D ++G VI + + A+L+KLMT Y+V L + K L + IS +E Sbjct: 40 LIDASSGEVIYKKNEETLIQSATLSKLMTEYIVLEQLNDGKIQLDESVKISNEVFQAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E F MN +K L LS + Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSALALAEHISGNEDSFTTLMNEKAKQLQLSQS 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 + F+N+ GV TTA D+A L+ ++ DFP ++ ++ + K + NTN Sbjct: 158 SPFLNSTGVNNDTNKQPSTTALDVAKLATQLVKDFPDVLNITKLTSYQFSFKDFQVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + + G DG++T F+ ++ V++A G+ LI+VIL A + N+ + Sbjct: 218 KMIYSLNKDIKLQGVDGLQTSFSTNGIYSFVSTAKLGNTRLISVILEADEENSTFIETKK 277 Query: 259 LLSMGF 264 LL GF Sbjct: 278 LLQYGF 283 >gi|323487044|ref|ZP_08092353.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323399635|gb|EGA92024.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] Length = 486 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 27/249 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L D + E D + PAS+TKLMTA +V +++ L +T S+NA E Sbjct: 107 LYDALNNRFLFEQNADTRFYPASITKLMTALLVL-----ERSSLDDTVTFSENAVTNLEA 161 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 K G ++ + + L++KSAN++A +AE + + F MN + +LG + Sbjct: 162 GAVTLKIKAGDKFSVKDCMYALLLKSANEVANGLAEHVAGSVSGFADLMNQKAASLGCTN 221 Query: 150 THFMNAHGVVQHGHYTTARDMAI-------------LSWRIKTDFPQYMHYFQIKGLEIK 196 THF+N +G+ HYTTARDMA+ ++ + DFP ++ L + Sbjct: 222 THFVNPNGLNDSNHYTTARDMALIAKAAFENQTLSQIASTVSYDFPATASVPTVRKLTM- 280 Query: 197 GKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 G K N A G + G G KTG+T +G +V A + + LIAV+L + + T Sbjct: 281 GHKMVNP--ANGEYYQGIVGGKTGYTSLAGNTLVTCAERDGKRLIAVVLKS--KQTHYTD 336 Query: 256 SASLLSMGF 264 + +LL GF Sbjct: 337 TKALLDYGF 345 >gi|294011645|ref|YP_003545105.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S] gi|292674975|dbj|BAI96493.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S] Length = 387 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 13/276 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + ++ + +LS + +++ P + D ++G V+ D PAS+ K+MT Sbjct: 3 KSIAALLFVGLLSTPLTAAAPPYSSEAPIAYMKDLSSGAVLYNKGGDTRIPPASMAKMMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNST--FKKGSTMTLDNALKLLIVKSA 116 A+V F +++ L T+ + P + ST G ++++N L ++ S Sbjct: 63 AHVAFRLIQKGDLKLEQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTLSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND V +AE + TE+ FV MN +K LGL ++F ++G G Y TA D+A L+ Sbjct: 123 NDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAALAE 182 Query: 176 RIKTDFPQ-YMHYFQIK----GLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + P Y ++ + G + G + N N +G GADG+KTG T +GF Sbjct: 183 ATIEETPNLYKKFYATRSFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTQEAGFGF 242 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 SA Q + L+ V+ G N R S + GF Sbjct: 243 TGSAEQEGRRLVMVVAGLTSFNQRIAESVRFMDWGF 278 >gi|171914424|ref|ZP_02929894.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM 4136] Length = 353 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 17/223 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L++ +TG VIA D AS K++TA +V + L + I+ + Sbjct: 119 FILVNADTGAVIAARNADTQRGAASTQKILTALIV-----AEAGNLDQRVRIAPSDVVVE 173 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS + G T + L +VKS+ND+A +A + + F + MN +++LG + Sbjct: 174 PSKLGVRPGEVYTRRDLLIAFLVKSSNDVANVLARDNAGSVEAFARKMNARARSLGAVNS 233 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR------IKTDFPQYMHYFQIKGLEIKGKK--YPN 202 +F N HG+ G ++TARD++ ++W ++ + + F G++ N Sbjct: 234 YFTNPHGLTGGGQHSTARDLSRIAWAAYNNPVVRDAVRRRYYTFTFN----NGRRVTLEN 289 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 TN +G +GMKTG+T A+G ++++A G + +I V LG Sbjct: 290 TNEILGRMAECNGMKTGYTVAAGRCLISTAHSGRKDVILVQLG 332 >gi|167766432|ref|ZP_02438485.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1] gi|317498290|ref|ZP_07956589.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|167711841|gb|EDS22420.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1] gi|291560872|emb|CBL39672.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SSC/2] gi|316894499|gb|EFV16682.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 374 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 21/229 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D +G ++ D PAS+TK++T V K+ L +T S N+ E Sbjct: 55 VIDAKSGKILYAKKVDDRHYPASITKILTTLVAIENNKD----LYDEVTFSSYAVNSIEP 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ K G + L + L ++++SAN+ AE T KKFV+ MN K LG + Sbjct: 111 GSTHIGIKAGEKIPLIDVLNAIMLESANEACNGAAEHTAGTTKKFVELMNKKVKELGCTG 170 Query: 150 THFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +HF+ +G+ HY TARDMA +S +R P Y Y + GK+ Sbjct: 171 SHFVTTNGLHDDDHYVTARDMAKISKAALENETFRYVACKPNY--YIAPTNKDKHGKELW 228 Query: 202 NTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + V + G +G KTG+T +G +V A +GDQ LI V L A Sbjct: 229 NHHKMVKRTMFNYDGVEGGKTGYTTKAGGTLVTFAKRGDQELIVVDLCA 277 >gi|312622507|ref|YP_004024120.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor kronotskyensis 2002] gi|312202974|gb|ADQ46301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor kronotskyensis 2002] Length = 451 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 35/239 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E + PAS TK++TA V S+ + L +S A+ P Sbjct: 48 LVEAHTGQILFEKNSNLTCFPASTTKVLTALVAISY----EHNLNKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGNIPAFVEKMNQYAKSIGAENS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKTDF----PQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P++ + Sbjct: 164 HFVNPNGLHSPQHYTTAYDLSLIARQAYQNEILRKIFSTVEYRITTASMHKKPEWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I L K KY + A G+KTG+T + ++ASA + + LIAVIL + D Sbjct: 224 INKLLRKNSKY--------YYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVILSSED 274 >gi|298244964|ref|ZP_06968770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297552445|gb|EFH86310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 319 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 23/246 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----E 88 L+D GHV+ + + + AS TK+MTA + + L IT+ ++A E Sbjct: 78 LVDMQNGHVLYDIHGEQAAPMASTTKIMTALIAI-----QTGNLDQEITVKRDAYLHVIE 132 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN+ G TL L L++ S D A+AI+++L + + FV MN + L L Sbjct: 133 LGSSNAGLVPGEQFTLRELLYGLMLPSGGDAAIAISDALAGSPENFVVRMNLFASRLHLF 192 Query: 149 ATHFMNAHGVV-QHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKK 199 TH+ N G+ + HY++A D+ L+ +R D P Y + + G Sbjct: 193 QTHYTNVDGLTSEDTHYSSAADLTRLTRYALTNPIFRQIVDTPTY----TLPTTKQHGPH 248 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + NTN + T+ G G+KTG T +G+ +V A + SLI V+L + D+ R++ + Sbjct: 249 TWTNTNTLLSTYKGMLGVKTGHTDLAGYCLVFEAQRNGHSLIGVVLNSPDQAIRDQDVSK 308 Query: 259 LLSMGF 264 LL+ GF Sbjct: 309 LLNWGF 314 >gi|30261566|ref|NP_843943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47777937|ref|YP_018113.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184396|ref|YP_027648.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|170706241|ref|ZP_02896702.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|229603016|ref|YP_002865975.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|30255420|gb|AAP25429.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47551642|gb|AAT30588.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178323|gb|AAT53699.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|170128775|gb|EDS97641.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|229267424|gb|ACQ49061.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 374 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K + + THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGA 246 + LI V L A Sbjct: 235 SKDGLDLIVVTLSA 248 >gi|229917441|ref|YP_002886087.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] gi|229468870|gb|ACQ70642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] Length = 415 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 25/246 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------ 86 L+D TG V+ D PAS+TKLMTA++ ++ K T IT S A Sbjct: 38 LVDVTTGQVLFAKQEDSMLQPASITKLMTAFLTREAIEAGKLSWTQEITPSDAALALTRK 97 Query: 87 ---SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + P N + T+ +++SAN+ AV + E++ +E+ FV+ MN + Sbjct: 98 PGLARIPLLNKPY------TVKELYDAALIRSANEAAVTLGEAVSGSEEAFVKEMNRRAD 151 Query: 144 NLGLSATHFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 LG++ T F NA G+ + + T+A+D+ L+ T +P+ + + +++ G Sbjct: 152 ELGMTQTTFANASGLDSESAGLPGDNLTSAKDLMKLAIAYLTTYPEVLDVTKRAYVDVDG 211 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 ++ TN + + G G KTG T +G+ + + + +++++V+LGA R Sbjct: 212 VRFDATNRMLANRDLAYPGMLGFKTGTTNEAGYCFIGVSTRDGRTVLSVVLGATSDEGRY 271 Query: 254 KVSASL 259 + +L Sbjct: 272 AATKAL 277 >gi|322421006|ref|YP_004200229.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp. M18] gi|320127393|gb|ADW14953.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp. M18] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 15/254 (5%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A ++ P T L G V + + PASLTK+MTA VV ++ L + + Sbjct: 27 AARSRHPSPTYLVKINGQVFRQQNANIRRAPASLTKMMTALVVM-----ERCDLDEVVVV 81 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S++A+ S ++G + + + L ++ SAND A+A+ +K FV MN + Sbjct: 82 SRSAARETGSRIGLRRGDKVRVRDLLAAALIASANDACRALADHTSGNQKDFVVQMNARA 141 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKK 199 + L L THF NA G G Y+ A D+A L+ R P++ + + I GK+ Sbjct: 142 RALDLENTHFTNACGHDNKGLYSNAHDLARLAERA-MQLPRFAELVSKRSMRISTVDGKR 200 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N N +G + GA G+KTG T +G +VA A + ++ ++ VI+ + R + + Sbjct: 201 TYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVALAEREERKVLVVIMHS---QNRWRAA 257 Query: 257 ASLLSMGFYNKTDR 270 +LL F + R Sbjct: 258 PALLDAAFAASSPR 271 >gi|227873312|ref|ZP_03991575.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268] gi|227840841|gb|EEJ51208.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268] Length = 525 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 37/259 (14%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 L+D + ++ A+N H + PAS+TK++TA VV ++ L +T S+ A+ Sbjct: 55 LMDAKSSTILYAKNENTH-YFPASITKVLTAIVVLEHVEN----LEEKVTFSQEATRGNL 109 Query: 91 PSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +NST G +++ + L L++ SAND A A+AE + + +KF + MN + +G Sbjct: 110 ENNSTVIAASPGDKLSVRDCLYSLLLHSANDCANALAEHVAGSNEKFAELMNQKAAEIGC 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPN 202 + +HF N G+ HYT+A DMA I+ + I P + QI ++ KYP+ Sbjct: 170 TNSHFTNPSGLNNPEHYTSALDMAKIMQYAISN--PTFC---QIDATQVYTHGPLIKYPD 224 Query: 203 TNWAVGT---------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N T + G KTG+T +G +V + +GD +LI VIL Sbjct: 225 PNAPENTIYAHHKMMKKSNKEYYSGVFAGKTGYTLLAGNTLVTACKRGDTTLICVILNG- 283 Query: 248 DRNTRNKVSASLLSMGFYN 266 N++ + S L GF N Sbjct: 284 -HNSQYRDSKKLFDFGFAN 301 >gi|229131021|ref|ZP_04259937.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228652433|gb|EEL08354.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] Length = 418 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 27/259 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 25 LVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK GL Sbjct: 85 RSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEFGLK 144 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ GH+ +ARD+AIL+ R+ DFP+ + +I K + Sbjct: 145 NYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKISKKV 204 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G + PN NW + + G DG+KTG T +G + + I+V++ Sbjct: 205 FREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGF 264 R + L GF Sbjct: 265 TKSHTARFDETKKLYDYGF 283 >gi|60101256|gb|AAX13706.1| penicillin-binding protein 4 [Staphylococcus aureus] Length = 431 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 32/259 (12%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-----P 90 + TG ++ + D WNPAS+TKLMT Y+ + K L+ T+ EY P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVN--KGQLSLDDTVRMTNKEYIMSTLP 113 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ Sbjct: 114 ELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKN 173 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 THF+N G Q TTARD AIL R+ + P+ + + + Sbjct: 174 THFVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLRVIKETPKILDFTKQLAPTT 233 Query: 196 KGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 234 HAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKN 293 Query: 249 ---RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 294 LGGEKQRNMMGNALMERSF 312 >gi|229053860|ref|ZP_04195297.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|228721470|gb|EEL72987.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 418 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 27/259 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K + +S+ A + Sbjct: 25 LVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNISQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK GL Sbjct: 85 RSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEFGLK 144 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ GH+ +ARD+AIL+ R+ DFP+ + +I K + Sbjct: 145 NYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKISKKV 204 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G + PN NW + + G DG+KTG T +G + + I+V++ Sbjct: 205 FREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIK 264 Query: 246 ALDRNTRNKVSASLLSMGF 264 R + L GF Sbjct: 265 TKSHTARFDETKKLYDYGF 283 >gi|251780348|ref|ZP_04823268.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084663|gb|EES50553.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 289 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD + V+ E AS TK++TA + ++ L + ISKNA+ S Sbjct: 47 LDRESKEVLFEQNAYEIVPMASTTKILTAIIAI-----EQGDLDKKVVISKNAASIRGSK 101 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K G + L L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF Sbjct: 102 VGYKAGEEVGLKELAFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFE 161 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGT 209 + HG+ + HY++A D+A+L+ + +F + K + + + Y N N + Sbjct: 162 SPHGLDSNSHYSSAYDLALLTAK-GMEFDLFREIVGSKQISKEKYNFTRDYNNINKILWL 220 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 A+G+KTG+T +G +V+S + +I V+L DR Sbjct: 221 IPEANGVKTGYTGGAGKCLVSSVNHQGKDIIIVVLNCPDR 260 >gi|222529246|ref|YP_002573128.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] gi|222456093|gb|ACM60355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] Length = 451 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 35/239 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG ++ E + PAS TK++TA V S+ + L +S A+ P Sbjct: 48 LVEAHTGQILFEKNSNLTCFPASTTKVLTALVAISY----EHNLNKIFKVSSKATMIEPG 103 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +S++ G T++ + L +++ SAND A IAE++ FV+ MN +K++G + Sbjct: 104 SSSYYLNPGETISFQDLLYAMLLISANDAANVIAENISGNIPAFVEKMNQYAKSIGAENS 163 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-----------------WRIKTDF----PQYMHYFQ 189 HF+N +G+ HYTTA D+++++ +RI T P++ + Sbjct: 164 HFVNPNGLHSPQHYTTAYDLSLIARQAYQNEILRKIFSTVEYRITTASMHKKPEWQIIYN 223 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I L K KY + A G+KTG+T + ++ASA + + LIAVIL + D Sbjct: 224 INKLLRKNSKY--------YYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVILSSED 274 >gi|188588227|ref|YP_001921472.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] gi|188498508|gb|ACD51644.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] Length = 289 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD + V+ E AS TK++TA + ++ L + ISKNA+ S Sbjct: 47 LDRESKEVLFEQNAYEIVPMASTTKILTAIIAI-----EQGDLDKKVVISKNAASIRGSK 101 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K G + L L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF Sbjct: 102 VGYKAGEEVGLKELTFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFE 161 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGT 209 + HG+ + HY++A D+A+L+ + +F + K + + + Y N N + Sbjct: 162 SPHGLDSNSHYSSAYDLALLTAK-GMEFDLFREIVGSKQISKEKYNFTRDYNNINKILWL 220 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 A+G+KTG+T +G +V+S + +I V+L DR Sbjct: 221 IPEANGVKTGYTGGAGKCLVSSVNHQGKDIIIVVLNCPDR 260 >gi|239827577|ref|YP_002950201.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239807870|gb|ACS24935.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 381 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 33/272 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ E AS+TK+MT L + + +T+S A S Sbjct: 38 LMEQNSGRILFEKDAHTKRRIASITKIMTV-----ILAIESGKMDDTVTVSARAVHTEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K+G + L + + +++S ND AVAIAE + + + FV MN + +G+ THF Sbjct: 93 SIYLKEGEKIKLRDLVYGTMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRNTHF 152 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEI-KGKKYPNTNW- 205 N HG+ HY+TA DMA+L QY + +I G E+ + P +W Sbjct: 153 ANPHGLDDSENHYSTAYDMALLM--------QYAMKNKEFRKISGTEVYRAPASPGEDWD 204 Query: 206 ---------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + G KTG+T + +V +A +G LI+V L A D + + ++ Sbjct: 205 RVWRNKNKLLTSLYEYCTGGKTGYTKRAKRTLVTTASKGGMDLISVTLDAPD-DWNDHIA 263 Query: 257 ASLLSMGFY--NKTDRKKINYIIKD-FYQQNL 285 G Y K +RK++ I+D FY++N+ Sbjct: 264 MYEYGFGHYMIAKVNRKRMVKKIRDSFYRKNI 295 >gi|295108761|emb|CBL22714.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 412 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 131/267 (49%), Gaps = 16/267 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ D PAS+TK+MT + L + A T + +++ +E S Sbjct: 76 LVDMLSGTILYSKNADKAQYPASITKIMTGLLGCENL-DLSAKFTMTESAARSITESNSS 134 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G T++ AL ++++SAN++ +A+AE + KKFV+ MN ++ LG + THF Sbjct: 135 SIYADTGEEFTVEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQLGCTNTHF 194 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVG--- 208 N +G+ HYTTA DMA ++ +F + + EI K+ T + + Sbjct: 195 NNPNGLPDETHYTTAADMAKIARAAWFNF-TFRKFVTTGYYEIPPTNKFAETRYLLNHHK 253 Query: 209 -------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G G KTG+T A+G +V A + L+AV++ ++ N + +LL Sbjct: 254 MMSGQTYAYDGVLGGKTGYTEAAGNTLVTYAKNDNTYLVAVVMQSV--NGAYSDTKALLD 311 Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNE 288 GF N R KI + K+ + L E Sbjct: 312 YGF-NNFSRSKIKGLKKEISRSCLPAE 337 >gi|153813187|ref|ZP_01965855.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174] gi|149830718|gb|EDM85809.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174] Length = 441 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ + D PAS TK+MT V K + T I + S Sbjct: 59 LIDADTGAVLYDKGMDEYRYPASTTKIMTMLVAIENSSPKDIVTFTETGIRD--VTWDSS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G TMT+ + +KSAN++ IAE++ TE FV+ MN +K LG + THF Sbjct: 117 NINAQLGETMTMKDCWMAAYIKSANEVCAQIAETVGGTEANFVEMMNQKAKELGCTHTHF 176 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYMHY--FQIKGLEIKGKKYPNTNWAV- 207 NA G+ HY++A D+A I+ ++ F Q M ++I + + +T+ + Sbjct: 177 ANASGLPDENHYSSAHDLAKIMRACLRNKRFRQVMKCSNYKIPATNLSEARVMHTHMPLM 236 Query: 208 ---GTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 AD G KTGF+ + +V +A + ++ IAV + A D S SL + Sbjct: 237 AKESNLYYADCIGGKTGFSTDAQHTLVTAAERNGRTYIAVTMRAADLGINCTDSTSLFNY 296 Query: 263 GFYN 266 F N Sbjct: 297 AFDN 300 >gi|299143329|ref|ZP_07036409.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517814|gb|EFI41553.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 436 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 19/264 (7%) Query: 20 LSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 L IAE NK P Y L D +G ++ D AS +KL++ +VV +K+ Sbjct: 59 LKIAELNKHPLTDLCDAYILGDYRSGKILESYNIDEVKAMASTSKLVSIFVVMDKIKDGT 118 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 + I +S S+ K+ T+ +K +V S ND A+A+ + +++ Sbjct: 119 IKKNDMVIIDHESSLLTGSSYKLKENDQKTVWQLIKAALVVSGNDAITALAKHISGSKEA 178 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 FV MN + LGL H +N G+ V+ + T R+M IL+ + +P+ + Sbjct: 179 FVSLMNKKCQELGLKNAHMVNPTGLTDYMVEDYNKMTTREMFILARELIKAYPELLEITS 238 Query: 190 IKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLI 240 + + + Y NTN A+G G DG+KTG+T A+G ++ + + D LI Sbjct: 239 LTEIAEPDRNYLEYNTNPALGIIKGVDGLKTGYTNAAGRCLIVTGFRKGDNTHTKDTRLI 298 Query: 241 AVILGALDRNTRNKVSASLLSMGF 264 VI+G+ R + L+ G Sbjct: 299 GVIIGSRTDWQRYVSATKLIGEGL 322 >gi|291614764|ref|YP_003524921.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans lithotrophicus ES-1] gi|291584876|gb|ADE12534.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans lithotrophicus ES-1] Length = 268 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 18/258 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWNPASLT 57 MR+ L I + +L+N + A+ + P L++ N G I PD PASLT Sbjct: 1 MRKAL-FIGLWLLANTVQ-ATTAQPDPFPEVATAYLVELN-GKAIWAKQPDRRLPPASLT 57 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMTA +V + + TP +A+ + K G + + L ++ SAN Sbjct: 58 KLMTALLVLERTRPDDIVTVTP-----SATHETGTRIGLKTGERFHVQDLLAAALLPSAN 112 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A+A+ L E FV MN + LG+ THF NA G + HY++A+D++IL+ + Sbjct: 113 DACQALADHLDGDETGFVARMNQRAHELGMRNTHFANACGHDKARHYSSAKDLSILAHAL 172 Query: 178 KTDFPQYMHYFQIKGLEI---KGK-KY--PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +P + + L+I G+ +Y + N +G + GA G+KTG+T +G +VA Sbjct: 173 -LKYPSLLDVTSQRKLQIATLDGQHRYILESKNALIGRYDGAIGIKTGYTPNAGKCLVAY 231 Query: 232 AIQGDQSLIAVILGALDR 249 A + +++ ++L DR Sbjct: 232 AKRDGNAVLFIMLHGHDR 249 >gi|221194412|ref|ZP_03567469.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626] gi|221185316|gb|EEE17706.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626] Length = 381 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +L+ + G+V+ PD AS+TK+MTA V + L P I E Sbjct: 40 ILEDDQGNVLWSKDPDRKMGMASITKVMTAMVAL----DSGIDLDKPCNIVSVDLEEGSV 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + TL L++L+V SAND+A IA ++ +++ F MN + +G++ THF Sbjct: 96 LANYSTSEHPTLRELLQVLLVHSANDVAYNIAINVAGSQEAFADLMNKKAAEIGMTNTHF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--EIKGKK--YPNTNWAVG 208 N HG+ HY+TARD+A+++ + +P + + ++G++ +P+T+ + Sbjct: 156 SNPHGLDADDHYSTARDLALMARYAREHYPFLASTVSMTSVTATVQGEEVTWPSTDKLLS 215 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 T+ G G+KTG + SG + +A + +L + +LG + R Sbjct: 216 TYPGMLGLKTG-SEDSGTAFLGAARRNGVTLYSCVLGCATDSGR 258 >gi|324120501|dbj|BAJ78640.1| penicillin binding protein 4 [Staphylococcus epidermidis] Length = 411 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 129/274 (47%), Gaps = 31/274 (11%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P T++ T G ++ + + D +PAS TKLMT V++ + + L + IS+ + Sbjct: 44 PRGTVVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYEDINHSEMRLKDKVKISERYQK 103 Query: 89 YP--PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P+ +TF KKG T T++ LK + S+N + +AE + KF MN ++ Sbjct: 104 MSQLPNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQL 163 Query: 145 LGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 LG++ THF N G + YTTA DMAIL+ + +P + Q+ Sbjct: 164 LGMNQTHFTNPSGADNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQL 223 Query: 191 KGLEIKGKKYPNTNWAVG-TFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + ++ NTN ++ LG DG+KTG T G+N+ +A + DQ + L Sbjct: 224 ETDTQYHQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKKGYNLALTA-KKDQLRVNTNLFN 281 Query: 247 LD-------RNTRNKVSASLLSMGFYNKTDRKKI 273 + + R+KV+ +L F N T RK I Sbjct: 282 IQPYPSEKAKFARHKVANALTQHAFENYTYRKVI 315 >gi|228984648|ref|ZP_04144821.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775042|gb|EEM23435.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 362 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDELDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|315659824|ref|ZP_07912683.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Staphylococcus lugdunensis M23590] gi|315495112|gb|EFU83448.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Staphylococcus lugdunensis M23590] Length = 411 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 56/336 (16%) Query: 1 MRQFLVIIAMAMLSNIFPFLS---------IAETNKL-------PYYTLLDTNTGHVIAE 44 MRQ + + L +F L+ IAE K P ++ T G ++ + Sbjct: 1 MRQIKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVTTQQGQILYD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNSTFK--KGS 100 + +PAS+TKLMT Y+V + + K LT + +S ++ P +TF KG Sbjct: 61 YHQHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKMSRIPGLTTFPLIKGK 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-- 158 T T+ LK + S+N + +AE + F MN ++ L + THF N G Sbjct: 121 TYTIQQLLKQGALASSNAAMLVLAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADN 180 Query: 159 ------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 QH TTA+DMA+L+ ++ P+ + ++ + G NTN + Sbjct: 181 RLIKPFAPSQYKQQHFSKTTAKDMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLS 240 Query: 207 VGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVS 256 + GADG+KTG T G+N+ +A Q + + +V+ ++ R ++S Sbjct: 241 LPAQADGLAGADGLKTG-TSNHGYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLS 299 Query: 257 ASLLSMGFYNKTDRK-----------KINYIIKDFY 281 ++ F N RK K+ Y+ KD Y Sbjct: 300 NIMVRRAFKNYDYRKVLSKGQHRIQGKMYYVKKDLY 335 >gi|333009575|gb|EGK29027.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri K-272] gi|333020502|gb|EGK39765.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri K-227] Length = 154 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN +K LGL+ T F HG+ G ++T RDMA+L + D P+ + K Sbjct: 1 MNGYAKKLGLTNTTFQTVHGLDAPGQFSTVRDMALLGKALIHDVPEEYAIHKEKEFTFNK 60 Query: 198 KKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + PN N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R Sbjct: 61 IRQPNRNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFN 118 Query: 255 VSASLLSMGF 264 S LL+ GF Sbjct: 119 ESEKLLTWGF 128 >gi|300853932|ref|YP_003778916.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434047|gb|ADK13814.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium ljungdahlii DSM 13528] Length = 408 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 18/224 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG ++ PD + PAS TK+MTA L + L + I KN + Sbjct: 39 ILDAATGQLLYSKNPDTAYPPASTTKIMTA-----LLTLENTNLNDKVIIGKNPPNVDGT 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +T+ + L L++ S ND A A+AE + T KFV MN +K LG T+F Sbjct: 94 RVGLCEGEQLTVKDLLYGLLLASDNDCAEALAEHIGGTMDKFVVKMNKRAKELGAKNTNF 153 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWAVGT 209 +N G+ H T+ARD+A++ R + P+Y I P W Sbjct: 154 VNPTGLFDESHKTSARDLALM-MRALSKHPEYSKIATTISYTIPATNKSPQPREVWNENK 212 Query: 210 FL---------GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G G KTG+T S + V++A + Q LI ++ Sbjct: 213 LIQKQSTYYYSGCLGGKTGYTVQSFHSYVSTATRNGQQLIVALI 256 >gi|220927973|ref|YP_002504882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219998301|gb|ACL74902.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 406 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 130/269 (48%), Gaps = 17/269 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +V +A+ ++ N P + T L L+DT G ++ E +P+ + KLMT Sbjct: 6 LIVFVALILIFNCLPVFAWTPTEGLTSSSVVLMDTVRGQILFEKNAYAHLSPSVMCKLMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A V +K L +TISKNA+ + N G+ T+++ L +++ ND AV Sbjct: 66 ALVTI-----EKTDLNAKVTISKNAASFKGLNLVV--GNQYTVEDLLYAVMLSQGNDAAV 118 Query: 122 AIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE + + +KFV++MN +K L L T+F+N G+ + YT+A+D+A+L + Sbjct: 119 ALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKDQYTSAKDIAVLV-KAAIS 177 Query: 181 FPQYMHYFQIKGLE-IKGKK---YPNTNWAVGTFLGADGMKTGF-TCASGFNIVASAIQG 235 + F +G + G N N ++ G DG K G T + V +A Sbjct: 178 NNTFNLMFGARGFGWLNGNNSSILTNQNTLFWSYKGVDGGKIGTNTNPQSISAVTTATLN 237 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ LIAV+ + N ++ +A L GF Sbjct: 238 EKRLIAVVFNTNEENAFSE-TAKLFDYGF 265 >gi|302337982|ref|YP_003803188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta smaragdinae DSM 11293] gi|301635167|gb|ADK80594.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta smaragdinae DSM 11293] Length = 434 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 29/263 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EY 89 L+D TG ++ + D PAS+TKL++ ++++ ++E + + I + A Sbjct: 75 VLIDDETGTLLFVKHGDEVIPPASMTKLVSLHLIYREIEEGRLSIDQEIIVPDFADFRSA 134 Query: 90 PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 PP +S + G ++ L + ++ L + S ND AV +A+ + + +V MN+ + LG Sbjct: 135 PPRSSLMFLQAGQSVRLIDLMRGLALPSGNDAAVLVADLIAGSTPAYVAMMNDEMRRLGF 194 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----------------FPQYMHYFQIK 191 S+ F ++ G +H + TA D A + R D +P+ + +K Sbjct: 195 SSIFFEDSSGYSEH-NRATALDFARFA-RFYVDTHPESLKELHSLTSFSYPKTENENGVK 252 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + PN N VG DG+KTG+ SG+N+ +A + LIAV++G N+ Sbjct: 253 AV-YGSVTQPNHNSLVGRHPWVDGLKTGYIDESGYNVALTAETRGRRLIAVLMGGPGENS 311 Query: 252 RN----KV--SASLLSMGFYNKT 268 R+ +V +LLS GFY T Sbjct: 312 RDGDLYRVIDGTNLLSYGFYRFT 334 >gi|228983269|ref|ZP_04143484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153793|ref|ZP_04281925.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|229194404|ref|ZP_04321209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228589060|gb|EEK47073.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228629662|gb|EEK86357.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228776449|gb|EEM24800.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 443 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|328947304|ref|YP_004364641.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens DSM 2489] gi|328447628|gb|AEB13344.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens DSM 2489] Length = 479 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML--TTPITISKNASEYP 90 ++D TG+++ E D PAS+TKL+ YVVF ++ + L P+ A P Sbjct: 104 VVDFATGNILFEKNADVQIPPASMTKLVEMYVVFEAVENGEISLDDVVPLPPESWARNLP 163 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +TL L L + S ND ++A+A+ +C FV+ MN T K +GL Sbjct: 164 SDASIMFLDERQKVTLRELLLGLAIASGNDASIAVAKYVCGNMDSFVERMNQTVKKMGLV 223 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------- 201 T F+ + G + + TTA++ A + FP + F + K +YP Sbjct: 224 KTEFVESSGYSEK-NITTAKEFAAFCRKYIERFPFAITEFHSQ----KVLRYPLAKNLPR 278 Query: 202 ---------------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 NTN +G+ G DG+KTGF SGFN+ +A + I+V + Sbjct: 279 ESAQKNGDSQAVIQYNTNKLLGSLDGCDGLKTGFIYESGFNLALTAERNGVRYISVTM 336 >gi|302392427|ref|YP_003828247.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302204504|gb|ADL13182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 383 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 14/219 (6%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ A+N+ + PAS TK+MT + + L T +T+S A+ Sbjct: 39 VVDVKTGEVLYAKNHHERR-PPASTTKIMTGILAI-----ENGNLDTEVTVSDRAAYTGG 92 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ G T+ L+ L L++ S ND AVAIAE + + + F MN ++ +G T Sbjct: 93 SSIWLTSGETLKLEELLYGLLLNSGNDAAVAIAEHIGGSVEGFAWMMNRKAREIGALNTT 152 Query: 152 FMNAHGVVQHGHYTTARDMAILS-WRIKTD-FPQYMHYFQIKGLEIKGKKYP----NTNW 205 F N +G+ Q+GH TTA D+A+++ + ++ D F + + + K + +G +Y NTN Sbjct: 153 FQNPNGLPQNGHLTTAYDLALITRYALQNDTFAKIVRTVR-KTISWEGHEYGRSLLNTNR 211 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + F DG+KTG+T A+G +V++A ++ +++V+L Sbjct: 212 LLRKFDKVDGVKTGYTDAAGRCLVSAASADNRQVVSVVL 250 >gi|313887666|ref|ZP_07821348.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846275|gb|EFR33654.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 456 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 13/247 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D +G ++ D AS +KL++ +VV ++E K L + I K A+ Sbjct: 97 YLLGDYKSGQILEGYNLDEIRAMASTSKLVSIFVVLDKIQEGKISLNDEVEIDKEAAALT 156 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ K+G +T++ ++ +V S ND A+ + + + FV+ MN+ +LGL Sbjct: 157 GSSFKLKEGDKVTVEKLIEASMVVSGNDAITALGKHVAGSTDAFVKMMNDKCHDLGLKNA 216 Query: 151 HFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 +N G+ + + T R+M +L+ + P+ + Y I LE G+ + NTN Sbjct: 217 LMVNPTGLTNYEILDYNKMTTREMFMLASELIKFHPEILKYTTIAKLEDPGRNFIEYNTN 276 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSA 257 +G DG+KTG+T A+G ++ + ++ D LI + G+ R Sbjct: 277 PVLGIVPEVDGLKTGYTNAAGRCVILTGLEKGVDEKSKDMRLIGITTGSNSDFERFVACK 336 Query: 258 SLLSMGF 264 L++ GF Sbjct: 337 RLITKGF 343 >gi|239636745|ref|ZP_04677747.1| penicillin-binding protein 4 [Staphylococcus warneri L37603] gi|239598100|gb|EEQ80595.1| penicillin-binding protein 4 [Staphylococcus warneri L37603] Length = 429 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 47/310 (15%) Query: 2 RQFLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLD------------------TNTGHVI 42 R F +II M + NI PF + + P +D + G ++ Sbjct: 3 RIFKLIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQDGQIL 62 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKK 98 E D W PAS+TKLMT Y+ +K+KK L + I+ S P SN+ Sbjct: 63 YEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKITDREYQMSTLPELSNTKLYP 122 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G T+ + L++ + S+N A+ + E + F MN +K LG+ TH++N G Sbjct: 123 GQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNPTGA 182 Query: 159 VQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 TTARD AIL + + P+ +H+ + G Y N Sbjct: 183 ENARLKSFAPSKYKKTENTTTTARDYAILDQHVINETPKILHFTKQLAPTTHGVTYYTFN 242 Query: 205 WAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNK 254 ++ + G DG+KTG + + +N + + + VILGA D RN Sbjct: 243 HSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQRNM 302 Query: 255 VSASLLSMGF 264 + +L+ F Sbjct: 303 MGNALMERSF 312 >gi|260588887|ref|ZP_05854800.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|260540666|gb|EEX21235.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] Length = 478 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 43/257 (16%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYP 90 ++D +T ++ D PAS TK++TA L +K T IT + N E Sbjct: 78 VMDMDTEEILYAKGIDEKRAPASTTKILTA-----MLAIEKVPFETQITFTDEVNNIEAG 132 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ K G T+T+ + +++ SAN+++ +AE + T FV MN +K LG + T Sbjct: 133 STHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKELGCTNT 192 Query: 151 HFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYM---------------HY 187 HF+NA+G+ HYTTARD+AI++ +R P Y+ H+ Sbjct: 193 HFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERWLNNHH 252 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 I ++G +Y + G G KTG+T +G +V A + + L+ +L + Sbjct: 253 KMI----LQGSEY---------YEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADV 299 Query: 248 DRNTRNKVSASLLSMGF 264 + + + +LL GF Sbjct: 300 NVVAQYTDTKALLDYGF 316 >gi|218670684|ref|ZP_03520355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56] Length = 152 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/126 (43%), Positives = 77/126 (61%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG ++A D +PASLTK+MT Y+ F LK K TPI +SK A+ PP+ Sbjct: 25 ILDARTGKILAAENADTLNHPASLTKMMTLYLTFEALKRGKIAWDTPIKMSKYAAARPPT 84 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G T+T+ A+ +IVKSAND A A+AE+L +E F + M ++ LG+S T F Sbjct: 85 KLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGFARMMTAKARQLGMSRTVF 144 Query: 153 MNAHGV 158 +NA G+ Sbjct: 145 LNASGL 150 >gi|52078501|ref|YP_077292.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52783865|ref|YP_089694.1| DacA [Bacillus licheniformis ATCC 14580] gi|319648529|ref|ZP_08002744.1| DacA protein [Bacillus sp. BT1B_CT2] gi|52001712|gb|AAU21654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus licheniformis ATCC 14580] gi|52346367|gb|AAU39001.1| DacA [Bacillus licheniformis ATCC 14580] gi|317389377|gb|EFV70189.1| DacA protein [Bacillus sp. BT1B_CT2] Length = 441 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 147/316 (46%), Gaps = 45/316 (14%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTK 58 ++I+A A+ F +S A+ P L++ ++G ++ D AS+ K Sbjct: 11 MLIVAFAVTVGAFSPMSTAKAANDPINVDAKAAILVEASSGKILYSKNADQRLPVASMAK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +MT Y++ + E K T + + + + SN +K + T+ + + Sbjct: 71 MMTEYLLLEAIHEGKVKWDQKYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQATAIY 130 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------- 164 SAN A+A++E + +E KFV+ MN +K LG+ F+NA G+ HG + Sbjct: 131 SANAAAIALSEIVAGSESKFVELMNKKAKELGMKDFKFVNATGLENKDLHGKHPSGTNAN 190 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWA----VGTF 210 +ARDMA+L+ + +D+P+ + I KG + + PN N+ V + Sbjct: 191 EENEVSARDMALLADHLVSDYPEILDTASIAKTKFRKGTDDE-MDMPNWNFMLKGLVQQY 249 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-DRNT-RNKVSASLLSMGFYNKT 268 G DG+KTG T ++G A+A + +I+V+L A D +T R K + +L F Sbjct: 250 EGVDGLKTGSTDSAGSCFTATAERNGMRVISVVLNAKGDLHTARFKETKKMLDYAFE--- 306 Query: 269 DRKKINYIIKDFYQQN 284 N+ +K+FY + Sbjct: 307 -----NFTMKEFYAKG 317 >gi|229183569|ref|ZP_04310793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228599979|gb|EEK57575.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] Length = 407 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|331083423|ref|ZP_08332535.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404116|gb|EGG83664.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium 6_1_63FAA] Length = 478 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 43/257 (16%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYP 90 ++D +T ++ D PAS TK++TA L +K T IT + N E Sbjct: 78 VMDMDTEEILYAKGIDEKRAPASTTKILTA-----MLAIEKVPFETQITFTDEVNNIEAG 132 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ K G T+T+ + +++ SAN+++ +AE + T FV MN +K LG + T Sbjct: 133 STHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKELGCTNT 192 Query: 151 HFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYM---------------HY 187 HF+NA+G+ HYTTARD+AI++ +R P Y+ H+ Sbjct: 193 HFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERWLNNHH 252 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 I ++G +Y + G G KTG+T +G +V A + + L+ +L + Sbjct: 253 KMI----LQGSEY---------YEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADV 299 Query: 248 DRNTRNKVSASLLSMGF 264 + + + +LL GF Sbjct: 300 NVVAQYTDTKALLDYGF 316 >gi|187935697|ref|YP_001886551.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str. Eklund 17B] gi|187723850|gb|ACD25071.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium botulinum B str. Eklund 17B] Length = 289 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD + V+ E AS TK++TA + ++ L + ISK A+ S Sbjct: 47 LDRESKEVLFEQNAYEIVPMASTTKILTAIIAI-----EQGDLDKKVVISKKAASIRGSK 101 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +K G + L L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF Sbjct: 102 VGYKAGEEIRLKELAFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFE 161 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYP------NTNWA 206 + HG+ + HY++A D+AIL+ + +Y + +I G +I +KY N N Sbjct: 162 SPHGLDSNSHYSSAYDLAILTAK----GMEYDLFREIVGSKQISKEKYDFTRDYNNINKI 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + A+G+KTG+T +G +V+S + +I V+L DR Sbjct: 218 LWLIPEANGVKTGYTGGAGKCLVSSVNHKGKDIIIVVLNCPDR 260 >gi|317056794|ref|YP_004105261.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] gi|315449063|gb|ADU22627.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] Length = 387 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG V+ E + L KLM + LK + LT +T+S NA+ P Sbjct: 47 VECNTGQVLFEKNSCEKTEISHLAKLMLVLLAAEKLKSGELSLTDTVTVSANANSMPAPQ 106 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K ++ + LK + + +AND AVA+AE + + V MN +K L + T + Sbjct: 107 IWLDKNEKISAEELLKAITIGNANDAAVALAEHIFGSTDNAVTQMNRKAKLLDMKLTEYA 166 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFL 211 + G+ A + S +K D YF+ I + + N N V T+ Sbjct: 167 DVCGLDSRTVADAADTAKLASELVKYDI--LTDYFKTWIDRVRSGKAELVNLNRLVRTYK 224 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G GMK + A+G V +A +GD + V+LG DR+ + ++ LL M F Sbjct: 225 GISGMKACSSSAAGECSVVTASRGDMEVAVVVLGCTDRSMCDDIAQKLLDMSF 277 >gi|324325393|gb|ADY20653.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 428 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|27466953|ref|NP_763590.1| penicillin binding protein 4 [Staphylococcus epidermidis ATCC 12228] gi|27314495|gb|AAO03632.1|AE016744_35 penicillin binding protein 4 [Staphylococcus epidermidis ATCC 12228] Length = 407 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 128/274 (46%), Gaps = 31/274 (11%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P ++ T G ++ + + D +PAS TKLMT V++ + K L + IS+ + Sbjct: 37 PRGAVVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYDDINHSKVSLKDKVKISERYQK 96 Query: 89 YP--PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P+ +TF KKG T T++ LK + S+N + +AE + KF MN ++ Sbjct: 97 MSQLPNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQL 156 Query: 145 LGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 LG++ THF N G + YTTA DMAIL+ + +P + Q+ Sbjct: 157 LGMNQTHFTNPSGANNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQL 216 Query: 191 KGLEIKGKKYPNTNWAVG-TFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + ++ NTN ++ LG DG+KTG T G+N+ +A + DQ + L Sbjct: 217 ETDTQYNQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKEGYNLALTA-KKDQLRVNTNLFN 274 Query: 247 LD-------RNTRNKVSASLLSMGFYNKTDRKKI 273 + + R+KV+ +L F N T RK I Sbjct: 275 IQPYPSEKAKFARHKVANALTQNAFKNYTYRKVI 308 >gi|301052915|ref|YP_003791126.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|300375084|gb|ADK03988.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 428 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQVMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|312793461|ref|YP_004026384.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180601|gb|ADQ40771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 387 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 121/256 (47%), Gaps = 17/256 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP + ++ T ++ E D AS Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V + + I I A P S+ +KG + + + L L++ S Sbjct: 77 TKIMTAILVL-----ENCDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 132 NDAAVALAIATAGDVKRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAY 191 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 192 AMRN-PIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 250 Query: 231 SAIQGDQSLIAVILGA 246 SA + D +I V+L A Sbjct: 251 SACRDDFRVICVVLNA 266 >gi|150396511|ref|YP_001326978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150028026|gb|ABR60143.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 384 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 9/263 (3%) Query: 7 IIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + A+ L+ I ++A+T K L+D TG V+ D P PASL KLM Sbjct: 6 LAAVGFLAAIVSGQAVAQTPAFDTKAKQIYLVDAETGTVLFSRDEDAPVPPASLAKLMAM 65 Query: 63 YVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKG--STMTLDNALKLLIVKSAN 117 VVF L + + T +S++A P ST S + + + ++ V+ AN Sbjct: 66 KVVFEALDKGELTPDTNFLVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATVQLAN 125 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D + +AE + +E F + M ++ +GL F NA G+ G+ T R++ L+ + Sbjct: 126 DACIILAEGMAGSEPAFAERMTKRAREIGLPVATFKNATGLPHPGNTITMRELVALARHL 185 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P Y + E N N + +G DG+ TGF GF++ AS +G++ Sbjct: 186 YEAHPNYYPLYSQPEFEWNKILQRNKNPLIAAKIGVDGLATGFAEGFGFSVAASMQRGER 245 Query: 238 SLIAVILGALDRNTRNKVSASLL 260 + + G R + S +L Sbjct: 246 RVYLAMSGLESEKERIEESRRVL 268 >gi|288554616|ref|YP_003426551.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] gi|288545776|gb|ADC49659.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] Length = 444 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 29/263 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----E 88 L++ +G ++ + D AS+TK+M+ Y++ + E + + IS + Sbjct: 42 LVEAESGKILYQKNIDAVLPLASMTKMMSEYLILEAISEGRISWDQQVPISDWVRTLSLQ 101 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN ++ T T+ + + + + SAN +A+AE + +E +FVQ MN + LGL Sbjct: 102 TALSNVPLRQDETYTVRDLYESVAIYSANASTIALAELISGSETQFVQLMNEKGEELGLE 161 Query: 149 ATHFMNAHGV----VQHGH----------YTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +F+N+ G+ +Q H +AR A L++ + D+P+ + I + Sbjct: 162 DFNFVNSSGLNNRDLQGNHPEGTGAEAENEMSARATAKLAYALLRDYPEVLETASIPMKD 221 Query: 195 IK---GKKYP--NTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + G+ P N NW + T + G DG+KTGFT A+G +A + LI+V+ Sbjct: 222 FQAGPGEVIPMENWNWMLPTIRPQHDYEGIDGLKTGFTSAAGNTFTGTAERDGMRLISVV 281 Query: 244 LGALDRNTRNKVSASLLSMGFYN 266 + R+ R + LL GF N Sbjct: 282 MRTESRDARFNETRKLLDFGFNN 304 >gi|149184554|ref|ZP_01862872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21] gi|148831874|gb|EDL50307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21] Length = 388 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 E + P L D +G V+ E D + PAS+TK+MT ++ F +++E K + TI Sbjct: 34 EADVAPIAFLFDLTSGQVLFEREADRRFMPASITKVMTTFLAFEWMEEGKIVPAQSFTIK 93 Query: 84 KNASEYPPSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + GSTM T+D+ + + SAND A A+A+ + +++V Sbjct: 94 PEVW-----RAWNNVGSTMFLPHDARVTVDDLVHGVTTVSANDGAAALADGAAGSIEEWV 148 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFP-QYMHYFQIKGL 193 MN+ + +G++ +HF +G + G + TARD+ L+ + P +Y H+ Sbjct: 149 AAMNSKASEIGMADSHFGTPNGWMDDGRTFVTARDLTTLATAMIRRHPTKYRHFIGQPAF 208 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 PN + G GADG+KTGFT +G+ + SA + + L+ V+ + R+ Sbjct: 209 TYNNITQPNHDPISGVVPGADGIKTGFTNQAGYGFLGSAERNGRRLVMVVAASPRARDRD 268 Query: 254 KVSASLLSMGF 264 + + +L+ GF Sbjct: 269 RAARNLIEWGF 279 >gi|47566159|ref|ZP_00237187.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|47556712|gb|EAL15043.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] Length = 428 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPFDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|188586265|ref|YP_001917810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350952|gb|ACB85222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 387 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 27/267 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E AS TK+MTA L ++ L +T S+ ASE S Sbjct: 57 LVDVKTGRVLYEQNSHKQLPMASTTKVMTA-----LLSLERGNLNEVVTASEAASEVEGS 111 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++ +TL+ L L+++S ND A AIAE + + F ++M + +++LG T+F Sbjct: 112 SIYLQEDEQLTLEAMLYGLMLESGNDAAHAIAEHIDGDIESFARNMTDRAESLGAKNTNF 171 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQ-----IKGLEIKGKKYPNTNW 205 N HG+ HY+TA DM I++ K+ F + + + KG + + N N Sbjct: 172 QNPHGLPSDNHYSTAYDMTIIAKEALKKSKFAEIVSTKEKLIPWEKG-DADWRYLNNDNK 230 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMG 263 + ADG+KTG+T A+G ++ S + ++ ++ +L A + ++ N LL G Sbjct: 231 LLDELSEADGVKTGWTEAAGRCLIFSGTKDERQVVGTVLKAPKMYQDAEN-----LLEYG 285 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVP 290 Y +++ I + L EVP Sbjct: 286 IYQFNEKQVIQ-------KGQLVREVP 305 >gi|49477173|ref|YP_035504.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196035444|ref|ZP_03102849.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196046527|ref|ZP_03113752.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|225863238|ref|YP_002748616.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB102] gi|49328729|gb|AAT59375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195992121|gb|EDX56084.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196022711|gb|EDX61393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|225788080|gb|ACO28297.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102] Length = 428 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|118476851|ref|YP_894002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|118416076|gb|ABK84495.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] Length = 443 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 66 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 125 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 126 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 182 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 183 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 241 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 242 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 297 >gi|42780462|ref|NP_977709.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|42736381|gb|AAS40317.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] Length = 428 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|52144058|ref|YP_082770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|196040650|ref|ZP_03107949.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|51977527|gb|AAU19077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|196028440|gb|EDX67048.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] Length = 428 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|187779546|ref|ZP_02996019.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC 15579] gi|187773171|gb|EDU36973.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC 15579] Length = 378 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 17/259 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSI----AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNP 53 +F++I+++ + + P + ++ NK PY +D +TG V+ E + Sbjct: 8 KFILILSLIFIVTLIPTKAYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPI 67 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MT V + L I IS+NA + S +KKG +TL L L++ Sbjct: 68 ASTTKIMTTLVALKY-----GDLDRKIEISENADKIKGSTVGYKKGEKITLRELLYGLML 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+AIAE + + + F + MN + +GL +HF+ HG+ + HY+TA D+A+ Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALA 182 Query: 174 SWRIKTD--FPQYMHYFQIKGLEIK-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + K F + + +K E + Y N N + ADG+KTG+T +G +V Sbjct: 183 TATAKKYELFNKIVSSKDVKKEEYSFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVT 242 Query: 231 SAIQGDQSLIAVILGALDR 249 S+ +I V+L R Sbjct: 243 SSKINGNDIIIVVLNCTPR 261 >gi|258423292|ref|ZP_05686183.1| penicillin-binding protein 4 [Staphylococcus aureus A9635] gi|257846353|gb|EEV70376.1| penicillin-binding protein 4 [Staphylococcus aureus A9635] Length = 431 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDFAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|170686750|ref|ZP_02877970.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|254682564|ref|ZP_05146425.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|170669273|gb|EDT20016.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] Length = 428 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|229195572|ref|ZP_04322338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228587821|gb|EEK45873.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 206 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 261 >gi|1125682|emb|CAA60585.1| penicillin binding protein 4 [Staphylococcus aureus] gi|1125686|emb|CAA60582.1| penicillin binding protein 4 [Staphylococcus aureus] Length = 431 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|258452851|ref|ZP_05700845.1| penicillin-binding protein 4 [Staphylococcus aureus A5948] gi|257859362|gb|EEV82216.1| penicillin-binding protein 4 [Staphylococcus aureus A5948] Length = 431 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|254733982|ref|ZP_05191696.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|228984448|ref|ZP_04144626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154942|ref|ZP_04283056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228628500|gb|EEK85213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228775314|gb|EEM23702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPFDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|30261380|ref|NP_843757.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47526551|ref|YP_017900.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65318644|ref|ZP_00391603.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] gi|165870392|ref|ZP_02215047.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|170706252|ref|ZP_02896713.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|227815884|ref|YP_002815893.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|229603883|ref|YP_002865796.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|254726225|ref|ZP_05188007.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254753718|ref|ZP_05205753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254758814|ref|ZP_05210841.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|30255234|gb|AAP25243.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47501699|gb|AAT30375.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713887|gb|EDR19409.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|170128786|gb|EDS97652.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|227004270|gb|ACP14013.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] gi|229268291|gb|ACQ49928.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|49184208|ref|YP_027460.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|49178135|gb|AAT53511.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] Length = 434 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 57 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 116 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 117 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 173 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 174 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 232 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 233 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 288 >gi|224498349|ref|ZP_03666698.1| hypothetical protein LmonF1_01100 [Listeria monocytogenes Finland 1988] Length = 269 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G ++ E D ASLTKLMTA++V + KK + + + S + Sbjct: 42 GKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHG 157 T ++ + ++V SAND A + + L F Q MNN +K LGLS T F++A G Sbjct: 102 KRTWSVRDLYSAMLVMSANDAAETLGDRL--EGASFPQKMNNEAKKLGLSNKTKFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + + + + +G K +TN +G G D Sbjct: 160 LDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLESTNDLIGAIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDADTAEKRFKDTEQLMKVGF 269 >gi|57651483|ref|YP_185581.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus COL] gi|87161157|ref|YP_493332.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194413|ref|YP_499206.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220824|ref|YP_001331646.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508904|ref|YP_001574563.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140859|ref|ZP_03565352.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262048386|ref|ZP_06021271.1| penicillin binding protein 4 [Staphylococcus aureus D30] gi|262051768|ref|ZP_06023986.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3] gi|282921932|ref|ZP_06329630.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus aureus A9765] gi|284023665|ref|ZP_06378063.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 132] gi|294849312|ref|ZP_06790055.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus aureus A9754] gi|304381746|ref|ZP_07364394.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285669|gb|AAW37763.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus COL] gi|87127131|gb|ABD21645.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201971|gb|ABD29781.1| penicillin-binding protein 4, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373624|dbj|BAF66884.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus str. Newman] gi|160367713|gb|ABX28684.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259160379|gb|EEW45405.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3] gi|259163474|gb|EEW48031.1| penicillin binding protein 4 [Staphylococcus aureus D30] gi|282593785|gb|EFB98776.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus aureus A9765] gi|294823844|gb|EFG40270.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus aureus A9754] gi|302750541|gb|ADL64718.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339697|gb|EFM05643.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197613|gb|EFU27948.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus CGS01] gi|329313365|gb|AEB87778.1| Penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus T0131] gi|329729882|gb|EGG66274.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus 21189] Length = 431 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|269940219|emb|CBI48596.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus TW20] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|257427430|ref|ZP_05603829.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257430061|ref|ZP_05606445.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 68-397] gi|257432763|ref|ZP_05609123.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus E1410] gi|257435667|ref|ZP_05611715.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M876] gi|282903234|ref|ZP_06311125.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus C160] gi|282905021|ref|ZP_06312879.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6 [Staphylococcus aureus subsp. aureus Btn1260] gi|282907979|ref|ZP_06315813.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910286|ref|ZP_06318090.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus WBG10049] gi|282913479|ref|ZP_06321268.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M899] gi|282918432|ref|ZP_06326169.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus C427] gi|282923397|ref|ZP_06331077.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus subsp. aureus C101] gi|283957442|ref|ZP_06374895.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500526|ref|ZP_06666377.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus 58-424] gi|293509471|ref|ZP_06668182.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus M809] gi|293524058|ref|ZP_06670745.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M1015] gi|297590466|ref|ZP_06949105.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MN8] gi|257275623|gb|EEV07096.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279258|gb|EEV09859.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 68-397] gi|257282178|gb|EEV12313.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus E1410] gi|257284858|gb|EEV14977.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M876] gi|282314265|gb|EFB44655.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus subsp. aureus C101] gi|282317566|gb|EFB47938.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus C427] gi|282322511|gb|EFB52833.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M899] gi|282325678|gb|EFB55986.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus WBG10049] gi|282328224|gb|EFB58503.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331846|gb|EFB61357.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6 [Staphylococcus aureus subsp. aureus Btn1260] gi|282596189|gb|EFC01150.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus C160] gi|283790893|gb|EFC29708.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus A017934/97] gi|290921021|gb|EFD98082.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus M1015] gi|291095531|gb|EFE25792.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus 58-424] gi|291467568|gb|EFF10083.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus M809] gi|297576765|gb|EFH95480.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MN8] gi|312438936|gb|ADQ78007.1| D-alanyl-D-alanine carboxypeptidase\/D-alanyl-D-alanine-endopeptidase [Staphylococcus aureus subsp. aureus TCH60] gi|315194012|gb|EFU24406.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus CGS00] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|82750345|ref|YP_416086.1| penicillin binding protein 4 [Staphylococcus aureus RF122] gi|82655876|emb|CAI80280.1| penicillin binding protein 4 [Staphylococcus aureus RF122] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLD 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|323442079|gb|EGA99713.1| penicillin binding protein 4 [Staphylococcus aureus O46] gi|333033712|emb|CBZ41973.1| penicillin binding protein 4 [Staphylococcus aureus] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|228926407|ref|ZP_04089479.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120916|ref|ZP_04250158.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228662576|gb|EEL18174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228833231|gb|EEM78796.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 407 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|15923632|ref|NP_371166.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus Mu50] gi|15926319|ref|NP_373852.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus N315] gi|148267101|ref|YP_001246044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus JH9] gi|150393149|ref|YP_001315824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus JH1] gi|156978970|ref|YP_001441229.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus Mu3] gi|253315285|ref|ZP_04838498.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005435|ref|ZP_05144036.2| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795094|ref|ZP_05644073.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9781] gi|258418353|ref|ZP_05682618.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9763] gi|258419969|ref|ZP_05682927.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9719] gi|258430843|ref|ZP_05688555.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9299] gi|258441664|ref|ZP_05690936.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A8115] gi|258445900|ref|ZP_05694077.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A6300] gi|258449705|ref|ZP_05697807.1| penicillin binding protein 4 [Staphylococcus aureus A6224] gi|258454106|ref|ZP_05702078.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A5937] gi|269202263|ref|YP_003281532.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ED98] gi|282894406|ref|ZP_06302635.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus A8117] gi|282926504|ref|ZP_06334134.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus A10102] gi|295407421|ref|ZP_06817217.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819] gi|296274707|ref|ZP_06857214.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus MR1] gi|297246543|ref|ZP_06930379.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796] gi|13700533|dbj|BAB41830.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus N315] gi|14246411|dbj|BAB56804.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus Mu50] gi|147740170|gb|ABQ48468.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus JH9] gi|149945601|gb|ABR51537.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus JH1] gi|156721105|dbj|BAF77522.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus Mu3] gi|257789066|gb|EEV27406.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9781] gi|257839146|gb|EEV63625.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9763] gi|257844052|gb|EEV68443.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9719] gi|257849515|gb|EEV73485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A9299] gi|257852133|gb|EEV76060.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A8115] gi|257855476|gb|EEV78414.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A6300] gi|257857213|gb|EEV80112.1| penicillin binding protein 4 [Staphylococcus aureus A6224] gi|257863971|gb|EEV86727.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus A5937] gi|262074553|gb|ACY10526.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ED98] gi|282591397|gb|EFB96469.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus A10102] gi|282763119|gb|EFC03250.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus A8117] gi|285816342|gb|ADC36829.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein PBP4 [Staphylococcus aureus 04-02981] gi|294967702|gb|EFG43735.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819] gi|297176574|gb|EFH35838.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796] gi|312829136|emb|CBX33978.1| D-alanyl-D-alanine carboxypeptidase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128480|gb|EFT84487.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus CGS03] gi|329724987|gb|EGG61485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus 21172] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|302332352|gb|ADL22545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus JKD6159] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|229029046|ref|ZP_04185145.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228732326|gb|EEL83209.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 407 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATAIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFAHMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPFDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 206 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 261 >gi|49482870|ref|YP_040094.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MRSA252] gi|295427185|ref|ZP_06819821.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus EMRSA16] gi|49240999|emb|CAG39669.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MRSA252] gi|295128973|gb|EFG58603.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|283469938|emb|CAQ49149.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus ST398] gi|298693973|gb|ADI97195.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ED133] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|253732917|ref|ZP_04867082.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus TCH130] gi|253729097|gb|EES97826.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus TCH130] Length = 414 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 39 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 99 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 158 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 159 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 218 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 219 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 278 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 279 GEKQRNMMGNALMERSF 295 >gi|222093783|ref|YP_002527831.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|221237829|gb|ACM10539.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 435 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 302 >gi|209559380|ref|YP_002285852.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) [Streptococcus pyogenes NZ131] gi|209540581|gb|ACI61157.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) [Streptococcus pyogenes NZ131] Length = 437 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 32/276 (11%) Query: 4 FLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F V++ + LS I F AE + +++ ++G V+ E P ASLTKL+ Sbjct: 13 FFVVLTCSGLSKIVLAADFQVGAE-----HAIVVEADSGRVLYEKDAKTPDAIASLTKLV 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 TAY+V +K + L+ + +S A E SN F K T ++ + L +V S+ Sbjct: 68 TAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVASS 126 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +E FV M + G+++ +NA G+ ++ Sbjct: 127 NSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEE 186 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218 + +A+D+AI++ + DFP+ + + ++ G + N + G DG+KT Sbjct: 187 NMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKT 246 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G T +G +V ++I+ LI VIL A D + +N+ Sbjct: 247 GTTDLAGHCLVVTSIENGMRLITVILNA-DGSDKNQ 281 >gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile 630] gi|255101659|ref|ZP_05330636.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-63q42] gi|255307527|ref|ZP_05351698.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile ATCC 43255] gi|115251551|emb|CAJ69384.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile] Length = 429 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 28/236 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ + PAS TK+ TA +V +K+ L I I K+ + S Sbjct: 40 LMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVKD----LNQVIEI-KDLPQIDGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATH 151 + K G + T+ L L+V SAND A +A + +KF+ MN+ +K +G + TH Sbjct: 95 SMYLKNGESFTVKQLLDALLVHSANDAAFVLARYVGGGNVQKFIDLMNSEAKKIGATNTH 154 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGT- 209 F N HG+ HYTTA DMA+++ R + + + K L+ + K YP + V T Sbjct: 155 FNNPHGLPDPNHYTTAHDMALIA-REAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTN 213 Query: 210 -FLGA------------------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 FL + DG+KTG+T A+G +++SA++ + +I + + Sbjct: 214 KFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCLLSSAVKDGRRVIVAVFNS 269 >gi|257424761|ref|ZP_05601188.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257272331|gb|EEV04454.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus 55/2053] Length = 455 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|229090329|ref|ZP_04221573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|228693023|gb|EEL46740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 406 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 29 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 88 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 89 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 146 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 204 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 205 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 259 >gi|206978355|ref|ZP_03239229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus H3081.97] gi|217957590|ref|YP_002336132.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH187] gi|206743447|gb|EDZ54880.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus H3081.97] gi|217065585|gb|ACJ79835.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH187] gi|324324003|gb|ADY19263.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 438 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|323439395|gb|EGA97117.1| penicillin binding protein 4 [Staphylococcus aureus O11] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|320140025|gb|EFW31886.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141884|gb|EFW33712.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA177] Length = 414 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 39 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 99 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 158 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 159 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 218 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 219 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 278 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 279 GEKQRNMMGNALMERSF 295 >gi|205373761|ref|ZP_03226563.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus coahuilensis m4-4] Length = 322 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT ++ +++ + + S+ A+ S + G MT++ LK + + SAND Sbjct: 1 MTMILIMEAIEKGQINWEDKVRTSEYAASMGGSQIFLEPGEEMTVEEMLKGIAIGSANDA 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VA+AE + +E+ FV+ MNN + L L T F N G+ H+++A DMA+++ Sbjct: 61 SVAMAEFIAGSEEAFVEMMNNKVEELKLKDTVFQNPTGLPADNHFSSAYDMAMMA----K 116 Query: 180 DFPQYMHYFQIKGL------EIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + +Y Q G E +K+ NTN V + G DG+KTG+T + + + A+ Sbjct: 117 ELLKYEKITQFTGTYEDYLRENTDEKFWLVNTNKLVRFYDGVDGLKTGYTSEAKYCLTAT 176 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A G+ ++AV+ G RN + +L F Sbjct: 177 AKVGNMRVVAVVFGEPTPKERNAEVSKMLDYAF 209 >gi|21282333|ref|NP_645421.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus MW2] gi|49485514|ref|YP_042735.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208633|ref|ZP_06925062.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912725|ref|ZP_07130168.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus TCH70] gi|21203770|dbj|BAB94469.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus MW2] gi|49243957|emb|CAG42383.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus MSSA476] gi|296886888|gb|EFH25792.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886971|gb|EFK82173.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus TCH70] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|253579895|ref|ZP_04857163.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848894|gb|EES76856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 459 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 33/257 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ D PAS+TK+MT + K+ ++ T T +++ S + Sbjct: 91 LMDADSGTLLYSKGGDEIRYPASITKIMTLLLAVENCSLKEDVVFTE-TGTRDIS-WDSG 148 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G M++ L L+++SAN++A IAE + TE+ FV MN + +G + THF Sbjct: 149 NIGMQVGEVMSMRACLYALVIRSANEVAAQIAEHVGGTEQHFVDMMNERAAQIGCTNTHF 208 Query: 153 MNAHGVVQHGHYTTARDMAILS---------WRI--KTDF----------PQYMHYFQIK 191 +NA G+ HY+TA DMA++ RI TD+ P+ +H Sbjct: 209 VNASGLPDPDHYSTAHDMALIMREGLKNKKFRRIIGATDYTIKPTNMNSEPRVLHTHHP- 267 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 P +++ + G G KTG+T +G +V +A + + I V + A D Sbjct: 268 ------MLAPESSYH---YDGCIGGKTGYTSEAGNTLVTAAGKNGTTYITVTMKAADLAV 318 Query: 252 RNKVSASLLSMGFYNKT 268 + S +L + G+ N T Sbjct: 319 ASTDSTALFNYGYQNFT 335 >gi|228932656|ref|ZP_04095531.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827028|gb|EEM72787.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 407 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTLSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 206 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 261 >gi|50513810|pdb|1TVF|A Chain A, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4) From Staphylococcus Aureus gi|50513811|pdb|1TVF|B Chain B, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4) From Staphylococcus Aureus Length = 369 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 42 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 101 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 102 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 161 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 162 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 221 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 222 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 281 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 282 GEKQRNMMGNALMERSF 298 >gi|329729569|gb|EGG65970.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus subsp. aureus 21193] Length = 431 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|218902481|ref|YP_002450315.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|218536407|gb|ACK88805.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] Length = 428 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + ++ V++ + R ++ L M Y+ Sbjct: 227 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVMAS----QRPEIYEDLKQMADYS 282 >gi|254976092|ref|ZP_05272564.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-66c26] gi|255093481|ref|ZP_05322959.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile CIP 107932] gi|255315225|ref|ZP_05356808.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-76w55] gi|255517894|ref|ZP_05385570.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-97b34] gi|255651009|ref|ZP_05397911.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-37x79] gi|260684078|ref|YP_003215363.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260687737|ref|YP_003218871.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260210241|emb|CBA64492.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile CD196] gi|260213754|emb|CBE05676.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile R20291] Length = 429 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 28/236 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ + PAS TK+ TA +V +K+ L I I K+ + S Sbjct: 40 LMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVKD----LNQVIEI-KDLPQIDGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATH 151 + K G + T+ L L+V SAND A +A + +KF+ MN+ +K +G + TH Sbjct: 95 SMYLKNGESFTVKQLLDALLVHSANDAAFVLARYVGGGNVQKFIDLMNSEAKKIGATNTH 154 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGT- 209 F N HG+ HYTTA DMA+++ R + + + K L+ + K YP + V T Sbjct: 155 FNNPHGLPDPNHYTTAHDMALIA-REAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTN 213 Query: 210 -FLGA------------------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 FL + DG+KTG+T A+G +++SA++ + +I + + Sbjct: 214 KFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCLLSSAVKDGRRVIVAVFNS 269 >gi|189501153|ref|YP_001960623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium phaeobacteroides BS1] gi|189496594|gb|ACE05142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium phaeobacteroides BS1] Length = 307 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 13/224 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D T ++ PASLTK++T S + + L + I K A+ Sbjct: 41 YILKDIGTSEILMSKNTGKRIQPASLTKILT-----SIMAIESGKLGDYVVIPKEATVVE 95 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 P+ + F+ G + L + +K +V+S+ND A AI+ L + + F + MN ++ +G+ + Sbjct: 96 PTKAGFQAGERIRLVDLVKASMVRSSNDAAFAISIYLGGSVQGFARMMNRKARKIGMRNS 155 Query: 151 HFMNAHGV---VQHGHYTTARDMAILS-WRIKTD-FPQYMHYFQIKGLEIKGKK---YPN 202 +F N G + GHY+TARD+ LS + I + F + I E +K + Sbjct: 156 NFTNPAGFDRDLYAGHYSTARDLLRLSEYAIGNEIFNRIAALDSISFFEQNTRKKYTLKS 215 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +N +G + A G+KTG+T +G ++A A +G++ ++ V+L A Sbjct: 216 SNKLLGKYQYAVGIKTGYTMKAGRCLIARAKKGEKDMVLVMLKA 259 >gi|1586531|prf||2204232B penicillin-binding protein 4 Length = 434 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q +TARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|150016752|ref|YP_001309006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149903217|gb|ABR34050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 284 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 10/200 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++T+ + ++ L + ISK A+ S +K+ +TL + L+ Sbjct: 65 ASTTKILTSLIAI-----EQGNLDKKVVISKKAAGIRGSTVGYKENEEITLRELVFGLMF 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KS ND A+AIAE L + + F + MN+ ++ +G+ +HF + HG+ HY++A D+AIL Sbjct: 120 KSGNDAAIAIAEELGGSIEGFAEIMNHYARGIGILDSHFESPHGLDSSKHYSSAYDLAIL 179 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + D+ + K + + + Y N N + GA+G+KTG+T +G +V Sbjct: 180 TAK-GMDYDLFREVVGSKQISKEKYNFTRDYNNINKILWRIPGANGVKTGYTGQAGKCLV 238 Query: 230 ASAIQGDQSLIAVILGALDR 249 +S + +I V+L DR Sbjct: 239 SSINNNGKDVIIVVLNCPDR 258 >gi|1864022|gb|AAB50178.1| pencillin binding protein 4 [Staphylococcus aureus] Length = 431 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q +TARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|301051750|ref|YP_003789961.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI] gi|300373919|gb|ADK02823.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 435 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 124 AMAIFSANGATIALAEAIASKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 302 >gi|210615749|ref|ZP_03290730.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787] gi|210150085|gb|EEA81094.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787] Length = 413 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 22/261 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R + I+ A+L I + E +L L+D ++G V+ E AS TK+ Sbjct: 20 RILVFILTCALLFGITSYAKEEEPKQLYAQSAVLMDADSGRVLFEKNGYEQKAMASTTKI 79 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT + +K +T+S+NA+ P + G L + L L+++S ND Sbjct: 80 MTCILAL-----EKGKPDQIVTVSENAARQPRVHLGMANGEQFYLRDLLYSLMLESHNDS 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHG-HYTTARDMA-ILS 174 AVAIAE + T + F + MN ++ +G T+F+ +G+ ++G H TTA ++A I+ Sbjct: 135 AVAIAEQVGGTVEGFARMMNEKAEKIGCKDTYFITPNGLDASDENGKHSTTAEELAKIMR 194 Query: 175 WRIKTDFPQYMHYFQIKGLE------IKGKKY---PNTNWAVGTFLGADGMKTGFTCASG 225 + IK PQ + +I + ++GK+ N N +G GA KTGFT +G Sbjct: 195 YCIKLS-PQKELFLEITQTQNHTFTDVEGKRQFSCNNHNVFLGMMDGALSGKTGFTGDAG 253 Query: 226 FNIVASAIQGDQSLIAVILGA 246 + V + QG+++ I +LG Sbjct: 254 YCYVGALKQGERTFIVALLGC 274 >gi|16802003|ref|NP_472271.1| hypothetical protein lin2944 [Listeria innocua Clip11262] gi|16415485|emb|CAC98169.1| lin2944 [Listeria innocua Clip11262] Length = 272 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 6/233 (2%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T G E D ASLTKLMTA++V + KK + + + S Sbjct: 39 TENGKAFYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEELDLIRLDDPSAVSLYA 98 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMN 154 + T ++ + ++V SAND A + L + F Q MNN +K LGLS T F++ Sbjct: 99 ITQKRTWSVRDLYSAMLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSNKTKFVS 156 Query: 155 AHGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFL 211 A G+ G +T +D+ +LS ++ + P+ + + +G +TN ++G+ Sbjct: 157 ASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKSSIITEEGATLESTNDSIGSIQ 216 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGFT +G+ + +A + + +I+++L A R K + L+ +GF Sbjct: 217 GLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDADTAEKRFKDTEKLMGIGF 269 >gi|311030756|ref|ZP_07708846.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13] Length = 384 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 25/270 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ +G +I E AS+TK+MTA L + L + +S+ A Sbjct: 39 VLIEQESGRIIYEKDAHDKQRIASITKVMTA-----ILAIESGKLDEIVKVSEKAVRAEG 93 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ K G + L++ + L+++S ND AVAIAE + + + FV MN + LG++ T Sbjct: 94 SSLYLKPGEKIKLEHLVYGLMLRSGNDSAVAIAEHVGGSLEGFVFMMNEKAAELGMTNTE 153 Query: 152 FMNAHGVVQH-GHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNW--- 205 F N HG+ H HY++A DMA+L+ + ++ D + ++ G ++ + P +W Sbjct: 154 FANPHGLDDHENHYSSAYDMALLTRYAMEND-----KFKEVAGTKVYRAPAAPGESWDRS 208 Query: 206 -------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVS 256 G + A G KTG+T + ++ +A + +IAV L D ++ + Sbjct: 209 WTNKHRLVTGMYQYATGGKTGYTKRAKRTLITTASKEGLDVIAVTLNGPDDWKDHIYMFN 268 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + Y+ ++ +++ + DFY+ +S Sbjct: 269 RAFVDYKLYDIAEKGELDNVKDDFYKGKVS 298 >gi|196041942|ref|ZP_03109229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus NVH0597-99] gi|196027197|gb|EDX65817.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus NVH0597-99] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|219854143|ref|YP_002471265.1| hypothetical protein CKR_0800 [Clostridium kluyveri NBRC 12016] gi|219567867|dbj|BAH05851.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 415 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 120/251 (47%), Gaps = 28/251 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ PD + PAS TK+MTA L + L +T+ KN + Sbjct: 46 ILDATTGEVLYAKNPDSAYPPASTTKIMTA-----LLTLENTNLNDKVTVGKNPPLVDGT 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 +G +T+ + L L++ SAND A A+AE + + +KF MN + LG T+ Sbjct: 101 RIGLYEGEELTVKDLLYGLLLASANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTN 160 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKY------ 200 F+N G+ H T+A+D+A++ + + P+Y Y+ I K+ Sbjct: 161 FVNPSGLFDEKHKTSAKDLALIMKELCKN-PEYSKIATTLYYTIPPTNKSPKERGVWNEN 219 Query: 201 ----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKV 255 PN+ + + G +G KTG+T S + V++A + Q LI ++ D+N T Sbjct: 220 KLIQPNSTYY---YSGCEGGKTGYTTQSLHSYVSAATRNGQRLIVALVH--DKNKTFFPD 274 Query: 256 SASLLSMGFYN 266 S SL + GF N Sbjct: 275 SISLFNFGFDN 285 >gi|326791206|ref|YP_004309027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326541970|gb|ADZ83829.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 436 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 22/248 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L+D T V+ E PAS+TKLMTA + L+ T IT SK A E Sbjct: 38 LIDATTKTVLYEKNAYSKQYPASITKLMTALLAIENLQP-----TDTITFSKEAIFGIER 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G +T+D AL L++ SAN++A +AE++ + F M++ +K LG Sbjct: 93 GSSHIGMDVGEQITVDQALHGLLLMSANEVANGLAEAVSGSIDAFAIRMSDRAKELGALN 152 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYM--HYFQIKGLEIKGK-KYPNTN 204 THF+N HG+ HYTTA DM++++ + + F M + +QI G + +Y + + Sbjct: 153 THFVNPHGLHDENHYTTAYDMSLIASYLADNEYFLNIMKDYIYQINGTNKTDEIRYLSQD 212 Query: 205 WAV------GTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + + D G KTG+T + +V A +G +L+AV++ + ++ T + Sbjct: 213 HKMFNPLKDASIFREDVIGGKTGYTDQARHTLVTIAKEGKTTLVAVVMKS-EKGTLYSDT 271 Query: 257 ASLLSMGF 264 +LL GF Sbjct: 272 NTLLDYGF 279 >gi|1262137|emb|CAA62899.1| penicillin-binding protein 4 [Staphylococcus aureus] Length = 431 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTLA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|42779091|ref|NP_976338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|42735006|gb|AAS38946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMFTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|229136857|ref|ZP_04265486.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] gi|228646592|gb|EEL02797.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] Length = 443 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|239825594|ref|YP_002948218.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239805887|gb|ACS22952.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 450 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 34/272 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D NTG ++ + D AS+TK+MT Y++ +KEK+ T S + + + Sbjct: 43 LVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAIKEKRVKWDQQYTPSDYVYRLSQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +K T+ + + + SAN VAIAE + +E+ FV+ MN +K LGL Sbjct: 103 RSLSNVPLRKDEKYTVRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKAKQLGLK 162 Query: 149 ATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ + + +AR +A L++ + ++P+ + + + Sbjct: 163 GYKFVNSTGLSNEDLKGFHPEGTNEREENVMSARSVATLAYHLLKEYPEVLETASTPRKI 222 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G K N NW V + G DG+KTG+T +G+ +A + I V++ Sbjct: 223 FREGTDDQIKMDNWNWMLPGLVREYEGVDGLKTGYTEFAGYCFTGTAERDGVRFITVVMN 282 Query: 246 ALDRNTRNKVSAS------LLSMGFYNKTDRK 271 A N ++ + A LL GF N + +K Sbjct: 283 A-KSNGKSTIEARFEQTEKLLHYGFSNYSIKK 313 >gi|153953521|ref|YP_001394286.1| DacA1 [Clostridium kluyveri DSM 555] gi|146346402|gb|EDK32938.1| DacA1 [Clostridium kluyveri DSM 555] Length = 407 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 120/251 (47%), Gaps = 28/251 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ PD + PAS TK+MTA L + L +T+ KN + Sbjct: 38 ILDATTGEVLYAKNPDSAYPPASTTKIMTA-----LLTLENTNLNDKVTVGKNPPLVDGT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATH 151 +G +T+ + L L++ SAND A A+AE + + +KF MN + LG T+ Sbjct: 93 RIGLYEGEELTVKDLLYGLLLASANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTN 152 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKY------ 200 F+N G+ H T+A+D+A++ + + P+Y Y+ I K+ Sbjct: 153 FVNPSGLFDEKHKTSAKDLALIMKELCKN-PEYSKIATTLYYTIPPTNKSPKERGVWNEN 211 Query: 201 ----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKV 255 PN+ + + G +G KTG+T S + V++A + Q LI ++ D+N T Sbjct: 212 KLIQPNSTYY---YSGCEGGKTGYTTQSLHSYVSAATRNGQRLIVALVH--DKNKTFFPD 266 Query: 256 SASLLSMGFYN 266 S SL + GF N Sbjct: 267 SISLFNFGFDN 277 >gi|228900148|ref|ZP_04064381.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228859554|gb|EEN03981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 362 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 56 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNESFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|269215526|ref|ZP_06159380.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC 700122] gi|269131013|gb|EEZ62088.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC 700122] Length = 456 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 125/273 (45%), Gaps = 31/273 (11%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D + AS+TK+MTA V A LT IT+S A S++ + G TM+L A Sbjct: 83 DSEYKIASITKIMTAIVAL-----DNASLTDTITVSDKAGTTIGSSAQLRPGDTMSLKTA 137 Query: 108 LKLLIVKSANDIAVAIAESLC---------KTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 L+ L+V S ND AVAIAE++ E FV MN + +G + T F N HG+ Sbjct: 138 LQGLLVPSGNDAAVAIAETVGARLVTDAQPDPEGAFVDAMNARAAEIGCTDTLFTNPHGL 197 Query: 159 VQHGH----YTTARDMA-ILSWRIKTD-FPQYMHYFQI------KGLEIKGKKYPNTNWA 206 G+ ++TA D+A + ++ ++ D F + + K + +T+ Sbjct: 198 DSDGYESDAHSTAHDVAKMTAYAMQNDTFRSIVGGGDVTVTVTQKDGTQRAITLISTDEL 257 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G + G G+KTG T N A A + + S+ V+LG+ R +ASLL F Sbjct: 258 LGVYDGMVGVKTG-TGDVALNCFAGACERTEDSIYTVVLGSSTEEGRFDATASLLDWAFD 316 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 N D IN + VP ++E CT Sbjct: 317 NIQDVDLIN---SPYALDRSGANVPVVAEVACT 346 >gi|228913946|ref|ZP_04077571.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944975|ref|ZP_04107336.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814644|gb|EEM60904.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845885|gb|EEM90911.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 407 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + ++ V++ + R ++ L M Y Sbjct: 206 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVMAS----QRPEIYEDLKQMADY 260 >gi|52143878|ref|YP_082950.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|51977347|gb|AAU18897.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] Length = 374 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 10/218 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ P AS+TK+MTA L + + + +S A S Sbjct: 37 LMEQHSGRVLYGKAEHEPQKIASITKIMTA-----LLAAESGKMKERVLVSNEAVRVEGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G + L++ + L+++S ND A IAE++ + + FV MN +K +G+ THF Sbjct: 92 AIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHF 151 Query: 153 MNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVG 208 N HG+ G HY++A DMA+L+ R + F K + YP N Sbjct: 152 SNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTS 210 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + A G KTGFT +G +V +A + LI V L A Sbjct: 211 YYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSA 248 >gi|266618633|pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From Staphylococcus Aureus Col In Complex With Cefotaxime gi|266618634|pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From Staphylococcus Aureus Col In Complex With Cefotaxime gi|266618635|pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From Staphylococcus Aureus Col In Complex With Ampicillin gi|266618636|pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From Staphylococcus Aureus Col In Complex With Ampicillin Length = 453 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 78 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 137 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ TH Sbjct: 138 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 197 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 198 FVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 257 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 258 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 317 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 318 GEKQRNMMGNALMERSF 334 >gi|228964541|ref|ZP_04125651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795141|gb|EEM42637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 362 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 56 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIDGFVYLMNEKAKKIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNESFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|153854350|ref|ZP_01995649.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814] gi|149753125|gb|EDM63056.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814] Length = 536 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 40/238 (16%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-P 90 ++D TG ++ A+N +H + PAS+TK++T+ + + L+ +T S + + Sbjct: 100 VMDAGTGSILYAKNIDEHEY-PASITKVLTSLIALKY-----GNLSDKVTFSNDCISFMQ 153 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK----FVQHMNNTSKN 144 P +S+ K+G+ ++L+ AL ++ SAN+ A A+AE++ K F+Q MN K+ Sbjct: 154 PGDSSVGLKEGNVISLEQALYATLLASANEAAYAVAENVGKNAGHDYDWFIQQMNEECKS 213 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILS---WRIKTDFPQYMHYFQIKGLEIKGKK-- 199 LG ++F+NA+G+ HYT ARDMA++ WR +P+++ Q + +I Sbjct: 214 LGGKNSNFVNANGLHDDNHYTCARDMALIGREIWR----YPEFLKICQEQSYKIPASDTT 269 Query: 200 ----YP---------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +P N N+ G KTG+T + ++ A G+ L+ V+L Sbjct: 270 EEHVFPQHHKMLIKENKNYYQYVVAG----KTGYTSNALSTLITLADNGNMKLVCVVL 323 >gi|306820946|ref|ZP_07454566.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551060|gb|EFM39031.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 434 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 25/232 (10%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++++ TG ++ + PAS TK+MT + L +K+ IT+ ++ Sbjct: 40 VVIESETGKILFDKNAKQKAFPASTTKIMTGLLAIENLDLEKS-----ITVPEDFQLVDG 94 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ G T + ++ +++ SAND V +A + + FVQ MN + LG + TH Sbjct: 95 SSMYLLPGETFKVRELIQAVLIHSANDACVLLAIEISGSVDSFVQLMNQKAAELGATNTH 154 Query: 152 FMNAHGVVQHGHYTTARDMAILSWR-IKTD-FPQYMHYFQIKGLEI----KGKKYPNTN- 204 F+N HG+ HYTTA DMAI++ +K D F + + + E + + Y NTN Sbjct: 155 FVNPHGLHDDNHYTTAYDMAIIAREAMKNDEFRKIVGQSSLILPETPKTPEKRIYNNTNR 214 Query: 205 --WAVGTFLGA-----------DGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 W+ + DG+KTG+T G +VAS I+ D LI+V+ Sbjct: 215 FLWSNSEIIYKNQYIPIKYDIIDGIKTGYTLEGGNCLVASGIKNDMRLISVV 266 >gi|284042207|ref|YP_003392547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter woesei DSM 14684] gi|283946428|gb|ADB49172.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter woesei DSM 14684] Length = 326 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 21/244 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ + AS+TK+MTA +V K ++ + TP ++ S Sbjct: 91 LVDAGSGRVLWRLEAERRLPIASVTKMMTALLVAERTKPREPVPITPQAVAYTGSGV--- 147 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G + + L L++ S ND A+A+A+ + + +FV+ MN ++ LGL+ T F Sbjct: 148 -GMLPVGRRVQTETLLYGLMLPSGNDAAIALAQHVSGSVARFVRLMNARARELGLTCTRF 206 Query: 153 MNAHGVVQHGHYTTARDMAILS---WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG- 208 + G+V G+++ A D+A+L R + + L I+G + W Sbjct: 207 ASPSGIVDSGNWSCAPDLALLGRELLRHRRLARVVRTPLAVMPLPIRGGRV----WLANH 262 Query: 209 ------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 + G +G+KTG+T A+G VAS + + LI V+L + D + + LL Sbjct: 263 NPLLRMRYAGVEGIKTGYTEAAGRCFVASVRRDGRRLIVVLLNSPDPGRQAR---RLLDA 319 Query: 263 GFYN 266 GF + Sbjct: 320 GFAS 323 >gi|52145200|ref|YP_081628.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] gi|51978669|gb|AAU20219.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] Length = 435 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHDAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 302 >gi|49478184|ref|YP_034369.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329740|gb|AAT60386.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|49183048|ref|YP_026300.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|165873233|ref|ZP_02217844.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0488] gi|167635043|ref|ZP_02393360.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0442] gi|167641737|ref|ZP_02399980.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0193] gi|170688916|ref|ZP_02880118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0465] gi|170707518|ref|ZP_02897971.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0389] gi|177655678|ref|ZP_02937003.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0174] gi|190569327|ref|ZP_03022219.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis Tsiankovskii-I] gi|196036362|ref|ZP_03103759.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W] gi|218901215|ref|YP_002449049.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH820] gi|227812687|ref|YP_002812696.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CDC 684] gi|254686602|ref|ZP_05150461.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CNEVA-9066] gi|254724155|ref|ZP_05185940.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A1055] gi|254737010|ref|ZP_05194715.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Western North America USA6153] gi|254755970|ref|ZP_05208002.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Vollum] gi|254761669|ref|ZP_05213687.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Australia 94] gi|49176975|gb|AAT52351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|164711031|gb|EDR16597.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0488] gi|167510291|gb|EDR85694.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0193] gi|167529517|gb|EDR92267.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0442] gi|170127514|gb|EDS96388.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0389] gi|170667140|gb|EDT17901.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0465] gi|172080018|gb|EDT65118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0174] gi|190559549|gb|EDV13542.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis Tsiankovskii-I] gi|195990992|gb|EDX54963.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W] gi|218539949|gb|ACK92347.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH820] gi|227002528|gb|ACP12271.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CDC 684] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|160880498|ref|YP_001559466.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160429164|gb|ABX42727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 342 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 24/246 (9%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP 91 DT+ + A+N D + PAS TKL+TA +V + L +TI K+ + Y Sbjct: 102 DTDHQVLFAKNVYDRIY-PASTTKLLTALIVLKY-----GDLKDSVTIEKDNAGVTTYGA 155 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 FK G ++++ L L+V S ND AVAIAE + + ++FV+ MN + N+G + TH Sbjct: 156 KLCNFKAGDVVSMETLLNCLLVYSGNDAAVAIAEHMYGSVEEFVKKMNEEAANIGATNTH 215 Query: 152 FMNAHGVVQHGHYTTARDMAIL---SWRIKTDFP-----QYMHYFQIKGLEIKGKKYPNT 203 F N HG+ HYTTA DM ++ + + P Y K +++ K Y T Sbjct: 216 FTNPHGLHDPNHYTTAYDMYLIFKECLKYEKFVPIIKQINYEASITDKDGKLRRKSYETT 275 Query: 204 N-WAVGTFLGADGM-----KTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVS 256 N + +GT +G+ KTG T +G ++ + D ++ I+ + A + + Sbjct: 276 NMFLLGTKETPEGVTVFGGKTGSTGDAGDCLILYSNSADGKAYISAVFKAAGKTSLYNQH 335 Query: 257 ASLLSM 262 A LL M Sbjct: 336 AHLLEM 341 >gi|317128665|ref|YP_004094947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] gi|315473613|gb|ADU30216.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] Length = 390 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 22/268 (8%) Query: 12 MLSNIFPFL---SIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 + + IF ++ S+ K+P T L+D++T ++ + P PAS+TK++TA Sbjct: 18 LFAIIFSYIDNTSVFAEKKIPEITSEAAILIDSHTEEILFDKNMMEPMYPASITKIVTAI 77 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + L +T+S +A + + +TL+ L+ L+V S ND A+AI Sbjct: 78 IAI-----ETQDLNDIVTVSSDAVRAIGTRVYLLEDEEITLEQLLQGLMVSSGNDAAIAI 132 Query: 124 AESLCKTEKKFVQHMNNTSK-NLGLS-ATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD 180 AE + + + F MN+ + +G+S T+F N HG+ + H TTA DMA I ++ +K + Sbjct: 133 AEHIDGSVEAFSDRMNDFVRTEVGVSDITNFTNPHGLFEEDHVTTAYDMAKISAYAMKNE 192 Query: 181 FPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + +E G+ + N + ++ G+K GF SG+ + +AI Sbjct: 193 --TFRELVGTHSVEWVGEGWETIIYNHHPLTRSYDEVIGIKNGFVRMSGYTLSTAAIDEH 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGF 264 LI+V L + RN K + +LL GF Sbjct: 251 IELISVTLNSPSRNFAQKDTLTLLDYGF 278 >gi|228943820|ref|ZP_04106207.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815844|gb|EEM62078.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 443 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|197303547|ref|ZP_03168586.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC 29176] gi|197297545|gb|EDY32106.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC 29176] Length = 434 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 126/269 (46%), Gaps = 39/269 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ E P AS TK+MT L + + + IT+S A+ P Sbjct: 72 LMDGDSGRILFEKNGSDPRPMASTTKIMTC-----ILALEASDPSRKITVSSQAASQPKV 126 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +G + L + L L+++S ND AVAIAE + + + F Q MN ++ +G T+F Sbjct: 127 HLGMTEGQSFYLKDLLYSLMLESHNDAAVAIAEGIDGSVEAFAQRMNQKAEEIGCKNTYF 186 Query: 153 MNAHGV----VQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQI--------KGLEIKGKK 199 ++ +G+ Q H+TTAR++A IL + I PQ + +I + E K Sbjct: 187 ISPNGLDAQDSQSNHHTTARELALILRYCIMVS-PQREAFLKITRTMQYTFQDCE-KNFS 244 Query: 200 YP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 Y N N + GA KTGFT +G+ V + + D++ I +L N RN Sbjct: 245 YSCNNHNAFLNMMEGALTGKTGFTADAGYCYVGALQRDDRTFIVALLACGWPNNRN---- 300 Query: 258 SLLSMGFYNKTDRKKI------NYIIKDF 280 Y D KK+ NY+ +DF Sbjct: 301 -------YKWMDTKKLMTYGLENYVYRDF 322 >gi|229121111|ref|ZP_04250348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|229183764|ref|ZP_04310981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228599613|gb|EEK57216.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228662230|gb|EEL17833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] Length = 357 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 10/218 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ P AS+TK+MTA L + + + +S A S Sbjct: 20 LMEQHSGRVLYGKAEHEPQKIASITKIMTA-----LLAAESGKMKERVLVSNEAVRVEGS 74 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G + L++ + L+++S ND A IAE++ + + FV MN +K +G+ THF Sbjct: 75 AIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHF 134 Query: 153 MNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVG 208 N HG+ G HY++A DMA+L+ R + F K + YP N Sbjct: 135 SNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTS 193 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + A G KTGFT +G +V +A + LI V L A Sbjct: 194 YYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSA 231 >gi|50914161|ref|YP_060133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] gi|50903235|gb|AAT86950.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] Length = 415 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 32/276 (11%) Query: 4 FLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F V++ + LS I F AE + +++ ++G V+ E P ASLTKL+ Sbjct: 13 FFVVLTCSGLSKIVLAADFQVGAE-----HAIVVEADSGRVLYEKDAKTPDAIASLTKLV 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 TAY+V +K + L+ + +S A E SN F K T ++ + L +V S+ Sbjct: 68 TAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVASS 126 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +E FV M + G+++ +NA G+ ++ Sbjct: 127 NSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEE 186 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218 + +A+D+A+++ R+ DFP+ + + + G + N + G DG+KT Sbjct: 187 NTLSAQDVAVVTMRLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKT 246 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G T +G +V ++I+ +I VIL A D + +N+ Sbjct: 247 GTTDLAGHCLVVTSIENGMRVITVILNA-DGSDKNQ 281 >gi|228951945|ref|ZP_04114043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069121|ref|ZP_04202413.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|229078751|ref|ZP_04211305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|229177976|ref|ZP_04305348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228605464|gb|EEK62913.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228704624|gb|EEL57056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228714066|gb|EEL65949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|228807868|gb|EEM54389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 363 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 57 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|228912752|ref|ZP_04076401.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846879|gb|EEM91882.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 443 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|213419096|ref|ZP_03352162.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 243 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LGL+ T F HG+ G ++TARDMA+L + D P + K + P Sbjct: 2 AKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP 61 Query: 202 NTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N W+ T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S Sbjct: 62 NRNRLLWS--TNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK 119 Query: 259 LLSMGF 264 LL+ GF Sbjct: 120 LLTWGF 125 >gi|15965358|ref|NP_385711.1| putative penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein [Sinorhizobium meliloti 1021] gi|307312733|ref|ZP_07592364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307317217|ref|ZP_07596658.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15074538|emb|CAC46184.1| Putative penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein [Sinorhizobium meliloti 1021] gi|306897305|gb|EFN28050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306899458|gb|EFN30090.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 384 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 6/221 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D TG V+ D P PASL KLM VVF L + + T +S++A Sbjct: 36 LVDAETGTVLFSRDEDAPVPPASLAKLMAMEVVFEALDKGELTPETSFEVSEHAWRTGGA 95 Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P ST S + + + ++ V+ AND + +AE + +E F + M +++LGL Sbjct: 96 PSGTSTMFAAIKSRIRVADLIQGATVQLANDACIVLAEGMAGSEAAFAELMTKRARDLGL 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F NA G+ + T R++ L+ + P Y + E N N + Sbjct: 156 PVATFKNATGLPHPENKVTMRELVALTRHLYEAHPDYYRLYSQPEFEWNKILQRNKNPLI 215 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 +G DG+ TGF GF++ S +GD+ + + +G L+ Sbjct: 216 AANVGVDGLATGFAEGFGFSLAVSMQRGDRR-VYLAMGGLE 255 >gi|228925267|ref|ZP_04088365.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931516|ref|ZP_04094424.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119676|ref|ZP_04248939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228663767|gb|EEL19344.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228828134|gb|EEM73860.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834381|gb|EEM79920.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 443 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|229189650|ref|ZP_04316665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228593914|gb|EEK51718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] Length = 363 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 57 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 235 Query: 245 GA 246 A Sbjct: 236 SA 237 >gi|225378650|ref|ZP_03755871.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM 16841] gi|225209487|gb|EEG91841.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM 16841] Length = 461 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 6/147 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG ++ E D PAS+TK+MT + L + L+ +T S +A Sbjct: 43 PGVILMEESTGTILYEKNSDEAHYPASITKIMT-----TLLALENGNLSDMVTFSDDAIN 97 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + G MTL+ L ++++SAN+ A A+AE + T + FV MN +K LG Sbjct: 98 NTEGSGIARDYGEQMTLEQCLYGVMLESANECAYAVAEHVGGTVENFVDMMNAKAKELGC 157 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILS 174 + THF N HG+ HYTTA DMA+++ Sbjct: 158 TNTHFANPHGLQDENHYTTAHDMALIA 184 >gi|30260203|ref|NP_842580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames] gi|47525265|ref|YP_016614.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|30253524|gb|AAP24066.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Ames] gi|47500413|gb|AAT29089.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. 'Ames Ancestor'] Length = 435 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 302 >gi|169334343|ref|ZP_02861536.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM 17244] gi|169259060|gb|EDS73026.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM 17244] Length = 369 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 134/278 (48%), Gaps = 14/278 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +II M +L N+ F + N Y +++ + V+ + + AS TK+M Sbjct: 4 KSIAIIIVMMILINLPNFGGVKAANVSAQAYCIMEAGSNRVLYSSNMNEKLPMASTTKVM 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA + +K L I I K + ++ K+G +TL++ L +++ S ND A Sbjct: 64 TAVLAL-----EKGSLNDVIEIKKEWTGIEGTSIYLKEGEKLTLEDLLHGMMLVSGNDAA 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKT 179 V+IA + + F + MN +K LG+ THF N +G+ HYTTA D +L S+ +K Sbjct: 119 VSIACYIGGSIDNFAKMMNKKAKELGMKNTHFTNPNGLPDDDHYTTAYDFTLLASYAMKN 178 Query: 180 DFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + + + + +GK N N + ++ GA+G+KTGFT + V +A + Sbjct: 179 ENFVKIINDEKWSMPYEGKANQRTLYNKNKLLKSYEGANGVKTGFTKKARKCFVLAAKRN 238 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + ++ V+L + +K+ L M F N T +K I Sbjct: 239 NMQVVGVLLHTENHYEESKM---FLDMAFNNFTLKKVI 273 >gi|257784553|ref|YP_003179770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM 20469] gi|257473060|gb|ACV51179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM 20469] Length = 407 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 11/246 (4%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+V+ PD AS+TK+MTA V + L P I+ E + Sbjct: 72 GNVLWSKNPDQELPMASITKVMTAIVAL----DSGVNLDEPCKITVPDLEEGSQVAGLTS 127 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 T TL + +++V SAND A IA ++ +++ F MN + +G++ T F N HG+ Sbjct: 128 DDTPTLRQLIMMMLVYSANDAAYNIAINVSGSQQAFADQMNKKAAEIGMTHTQFQNPHGL 187 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--EIKGKK--YPNTNWAVGTFLGAD 214 GHY+TARD+A++ + +P + + G++ + +T+ + T+ G Sbjct: 188 DADGHYSTARDLALMGRYAREHYPLIASAVHTRSYTTTVGGEQRTFHSTDDLMDTYRGLL 247 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKK 272 G+KTG SG + ++ +G+ +L +LG R +A L++ + YN+ ++ Sbjct: 248 GIKTGAE-DSGTAFLGASKRGNITLYTCVLGCETIQGRFDDTAILMNWAYRNYNRISVQR 306 Query: 273 INYIIK 278 + II+ Sbjct: 307 ADQIIQ 312 >gi|218895150|ref|YP_002443561.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus G9842] gi|218543092|gb|ACK95486.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus G9842] Length = 438 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 46 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 106 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 166 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 225 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 226 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 285 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 286 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 317 >gi|282915977|ref|ZP_06323742.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus D139] gi|282320273|gb|EFB50618.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus D139] Length = 431 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSNFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|210612733|ref|ZP_03289448.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787] gi|210151426|gb|EEA82434.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787] Length = 324 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 24/227 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++T Y+ K L+ +T+SKNA P +S ++G +TL++ + Sbjct: 97 PASTTKILTLYLAL-----KYGTLSDEVTVSKNAVSVPSDSSVAGLREGEQLTLEDLVYG 151 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AVAIAE + + FVQ MN + LG + +HF+N HG HYTTA D+ Sbjct: 152 LMLPSGNDSAVAIAEHISGSVDAFVQLMNQEANALGATNSHFVNPHGYHDKDHYTTAYDL 211 Query: 171 -AILSWRIKTD-------FPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGAD-----GM 216 I + I+ + P Y + ++ + +N V GT + G Sbjct: 212 YLIFNQGIQNEKFVDIISSPSYTTDIKEPDGSVRSVTWRQSNLFVNGTRTAPENVTVVGG 271 Query: 217 KTGFTCASGFNIVASAIQGDQS--LIAVILGALDRNTRNKVSASLLS 261 KTG T +G +V Q QS I+V++GA +N SLLS Sbjct: 272 KTGTTDEAGACLVLYE-QDSQSRPYISVVMGAESKNALYTTMDSLLS 317 >gi|229603861|ref|YP_002864665.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0248] gi|229268269|gb|ACQ49906.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0248] Length = 438 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|253731263|ref|ZP_04865428.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725004|gb|EES93733.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 431 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 32/259 (12%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-----P 90 + TG ++ + D WNPAS+TKLMT Y+ + K L+ T+ EY P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVN--KGQLSLDDTVRMTNKEYIMSTLP 113 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ Sbjct: 114 ELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKN 173 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 THF+N G Q TTARD AIL + + P+ + + + Sbjct: 174 THFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTT 233 Query: 196 KGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 234 HAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKN 293 Query: 249 ---RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 294 LGGEKQRNMMGNALMERSF 312 >gi|283769805|ref|ZP_06342697.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus subsp. aureus H19] gi|283459952|gb|EFC07042.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Staphylococcus aureus subsp. aureus H19] Length = 431 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 116/257 (45%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP- 91 + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S P Sbjct: 56 SQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ + L++ + S+N A+ +A + K FV MNN +K +G+ TH Sbjct: 116 SNTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSDFVDLMNNKAKAIGMKNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q TTARD AIL + + P+ + + + Sbjct: 176 FVNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHA 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N+++ + G DG+KTG + + +N + +G + VI+GA D Sbjct: 236 VTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLG 295 Query: 249 -RNTRNKVSASLLSMGF 264 RN + +L+ F Sbjct: 296 GEKQRNMMGNALMERSF 312 >gi|172058567|ref|YP_001815027.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sibiricum 255-15] gi|171991088|gb|ACB62010.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sibiricum 255-15] Length = 421 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 17/189 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TKL+TA V + +K L T++ + P +ST F+ G +T+ L Sbjct: 206 PASTTKLLTAIVAYD-AAAQKGTLDQTFTLTYSMLAVPSGSSTAGFRSGDKVTMRQLLNG 264 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++++S ND A AIA +E KFV MN+ + +G+SA+HFMN HG HYTTA DM Sbjct: 265 MLIRSGNDAAKAIAVRTAGSESKFVSLMNSRASRIGMSASHFMNPHGFYHPSHYTTAADM 324 Query: 171 AILSWRIKTDFPQYMHYFQIKGLE-----IKGKKYPNTNWA-VGTFLGAD----GMKTGF 220 ++ + Y + + G + +KG W T L D KTG+ Sbjct: 325 Q----KLANTYANYSYLMTVSGRKSFQTTVKGPYARTLTWYHTNTSLPGDTRVYASKTGY 380 Query: 221 TCASGFNIV 229 T S + V Sbjct: 381 TPESAYTRV 389 >gi|116513223|ref|YP_812130.1| D,D-carboxypeptidase PBP3 [Lactococcus lactis subsp. cremoris SK11] gi|116108877|gb|ABJ74017.1| D,D-carboxypeptidase PBP3, Serine peptidase, MEROPS family S11 [Lactococcus lactis subsp. cremoris SK11] Length = 434 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/326 (26%), Positives = 143/326 (43%), Gaps = 54/326 (16%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K TT + IS A E Sbjct: 43 IDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQN 102 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN AVA+AE + +E KFV M K+ G++ Sbjct: 103 SNASNIPLAQNGQYTVKDLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTAQMKDWGIT 162 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 163 DSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQI--TKKTE 220 Query: 195 I-------KGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I + NTN + F G DG+KTG T + Q +I V+ Sbjct: 221 IPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVV 280 Query: 244 LGALDRNTRNKVSASLLSM------GFYNKTDRKKINYIIKDFYQ--------------- 282 L A D N +L + G + T+ + N + DF + Sbjct: 281 LEATDPAADNSTPFTLTNQLMNYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKEKSVQLVA 340 Query: 283 -QNLSNEVPNISEEVCTTQKEIINYN 307 QN++ VP ++ T+ +I ++ Sbjct: 341 PQNVTPVVPYATDGSADTKPLVIKFD 366 >gi|125625313|ref|YP_001033796.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363] gi|124494121|emb|CAL99122.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072127|gb|ADJ61527.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp. cremoris NZ9000] Length = 434 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 143/326 (43%), Gaps = 54/326 (16%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K TT + IS A E Sbjct: 43 IDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQN 102 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN A+A+AE + +E KFV M K+ G++ Sbjct: 103 SNASNIPLAQNGQYTVKDLLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKDWGIT 162 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 163 DSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQI--TKKTE 220 Query: 195 I-------KGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I + NTN + F G DG+KTG T + Q +I V+ Sbjct: 221 IPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVV 280 Query: 244 LGALDRNTRNKVSASLLSM------GFYNKTDRKKINYIIKDFYQ--------------- 282 L A D N +L + G + T+ + N + DF + Sbjct: 281 LEATDPAADNSTPFTLTNQLMNYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKEKSVQLVA 340 Query: 283 -QNLSNEVPNISEEVCTTQKEIINYN 307 QN++ VP ++ T+ +I ++ Sbjct: 341 PQNVTPVVPYATDGSADTKPLVIKFD 366 >gi|228905810|ref|ZP_04069709.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228853818|gb|EEM98576.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 424 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 32 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 91 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 92 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 151 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 152 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 211 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 212 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 271 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 272 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 303 >gi|229159188|ref|ZP_04287214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228624269|gb|EEK81069.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 443 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 137/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLALVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MNN +K LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKAKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV---- 207 TT A+D+A L+ + D+P+ + +I + +K N NW + Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPMKVFRPEKEQFKMLNWNWMLKGLS 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ R R + L GF N Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRLISVVIKTNSRQARFDETKKLYDYGFAN 310 >gi|217958851|ref|YP_002337399.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|217065525|gb|ACJ79775.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] Length = 428 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSI 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|228963111|ref|ZP_04124282.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796567|gb|EEM44004.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 443 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 51 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 111 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 171 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 230 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 231 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 290 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 291 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 322 >gi|71910630|ref|YP_282180.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] gi|71853412|gb|AAZ51435.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] Length = 442 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 67 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 126 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 127 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 185 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 186 SGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 245 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ LI VIL A D + Sbjct: 246 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DGS 304 Query: 251 TRNK 254 +N+ Sbjct: 305 DKNQ 308 >gi|254479748|ref|ZP_05093030.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium pacificum DSM 12653] gi|214034315|gb|EEB75107.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium pacificum DSM 12653] Length = 334 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 20/190 (10%) Query: 92 SNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 NS F G +TL+ L L+++SAND A+AIAE + + + F + MN ++ +G + Sbjct: 9 GNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEYIGGSVENFAKMMNEKAREIGAYNS 68 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYFQIKGLEIKGKKYPNTN 204 HF+N +G+ HY+T DMA ++ R ++ +HY QI K P Sbjct: 69 HFVNPNGLPDENHYSTPYDMAQIA-RYAMQNAEFRKIVSTLHY-QIPPTNKFDK--PRDL 124 Query: 205 WAVGTFL--------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 W L GADG+KTG+T A+G +VASA + LI+VI+G N + Sbjct: 125 WISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMGDEGINIWTD-T 183 Query: 257 ASLLSMGFYN 266 LL GF N Sbjct: 184 IKLLDYGFQN 193 >gi|65317476|ref|ZP_00390435.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 443 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDAXLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 TT A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 310 >gi|206977836|ref|ZP_03238725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|206743933|gb|EDZ55351.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] Length = 428 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSI 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|153954083|ref|YP_001394848.1| DacA3 [Clostridium kluyveri DSM 555] gi|219854696|ref|YP_002471818.1| hypothetical protein CKR_1353 [Clostridium kluyveri NBRC 12016] gi|146346964|gb|EDK33500.1| DacA3 [Clostridium kluyveri DSM 555] gi|219568420|dbj|BAH06404.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 420 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 21/226 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92 +D T +I E PD PAS TKL+TA L EK T +T + A P S Sbjct: 43 VDMQTNEIIYEKNPDTKIYPASTTKLLTA-----ILLEKNKKETDMLTYTAEAKAQPQSS 97 Query: 93 -NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS + G T++ N + L++ SAND+A IAE++ K+ +F MN ++L L Sbjct: 98 LNSAARPIEVGDTISAKNVMDALLMFSANDMACVIAENISKSIPEFADKMNEEVQSLNLK 157 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL-------SWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 THF+ +G+ HY+T+ DM+I+ SW T + KG Sbjct: 158 NTHFITPNGLHNPDHYSTSYDMSIIAREAFKNSWIRDTIYKSTSTVTTSKGASF---AII 214 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 NTN +G G G KTG+T +G +VA + ++ ++ +++ ++ Sbjct: 215 NTNKLLGKD-GCIGGKTGYTDPAGRCLVAIYERDNRKILGIVMNSI 259 >gi|295835113|ref|ZP_06822046.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74] gi|295825314|gb|EFG64181.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74] Length = 322 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 16/225 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA VV + + +T E S + + G T+T L +++ Sbjct: 98 ASTTKIMTAVVVLKHPEWLERRITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLI 157 Query: 114 KSANDIAVAIAESLCKTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 S D A A+A++ + + F+ MN ++ LGL THF + G+ Q +++TA Sbjct: 158 PSGADAARALADNFGNGDTEEARIADFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTA 217 Query: 168 RDMAILSWR--IKTDFPQYMHYFQIK--GLEIKGK----KYPNTNWAVGTFLGADGMKTG 219 RD+A L R ++ F + + Q K G+ + NTN +GT+ GA G+KTG Sbjct: 218 RDLAKLGQRAMLQPVFAEVVKNTQYKTEAPAANGRTRYYTWNNTNELLGTYDGALGVKTG 277 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ +V +A + +++LI V+LG D R + +L GF Sbjct: 278 SGPEDGYCVVFAAERDNRTLIGVVLG--DDEGRFDDATKILDWGF 320 >gi|317128528|ref|YP_004094810.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] gi|315473476|gb|ADU30079.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] Length = 377 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 13/223 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ E AS+TK+MTA L + L +T+S NA S Sbjct: 36 LMEQESGRVLYEKEAHTQMRIASITKIMTA-----ILAIESGELDEWVTVSSNAEGTEGS 90 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + L + + L+++S ND AVAIAE + + + FV MN ++ LG++ T F Sbjct: 91 SIYLVAEEEIQLRDLVYGLMLRSGNDSAVAIAEHVGGSLEGFVYMMNEKAQELGMTRTVF 150 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA 206 N HG+ H HY+TA DMA+L+ R D +Y K K K + N N Sbjct: 151 SNPHGLDDHEEHYSTAYDMALLT-RYAMDNEEYKEIAGTKSYRSKNKDDHYRVFNNKNRL 209 Query: 207 VGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + + G KTG+T + +V++A + D LIAV + A D Sbjct: 210 LTQLYRNSTGGKTGYTKRAKRTLVSTAEKEDVELIAVTINAPD 252 >gi|229058203|ref|ZP_04196591.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228720067|gb|EEL71651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 362 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVIPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKELVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|169351202|ref|ZP_02868140.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552] gi|169292264|gb|EDS74397.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552] Length = 415 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 38/276 (13%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L+I + +S I P ++ + ++ Y +D N+G ++ D PAS+TK+M Sbjct: 8 LLISLVCTISLITPIRALDNSEEIGLSAQYAVAIDANSGLILYNKNMDERMYPASMTKVM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TA V ++ L I++N E S++ F+ G T+T + L I+ S Sbjct: 68 TAIVALDMIEN----LDKTTVITQNDIDTVWETGASSANFEVGETVTYRDLLLGAILPSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSW 175 D A+A +LC +++ FV+ MN +K L L THF+N G+ HYTT DMA I+ + Sbjct: 124 ADATRALANNLCGSQEAFVEKMNECAKKLKLKDTHFVNTTGIHDDNHYTTVHDMALIVQY 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAVGTFLGAD----------GMKTGF 220 + P + EI K+Y ++ W + A G K+G+ Sbjct: 184 AVAN--PTFK--------EIYSKRYATSSNGLHQWVNKSVYNAKRSNINTDSIIGCKSGY 233 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 T A+ + + GD +I V+ A++ + + K + Sbjct: 234 TDAAKNCLSSLDKVGDNEIIVVVGKAVNNDVKPKAA 269 >gi|229010872|ref|ZP_04168069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|229132375|ref|ZP_04261229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228651081|gb|EEL07062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228750546|gb|EEM00375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 362 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 134/302 (44%), Gaps = 29/302 (9%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKELVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA----------LDRNTRNKVSASLLSMGFYNKTDRKK-INYIIKDFYQQNLSNEVPNIS 293 A D+ A +L G + + KK N++ Y +N S VP Sbjct: 235 SASSDWDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHV----YTKN-SFSVPLTE 289 Query: 294 EE 295 EE Sbjct: 290 EE 291 >gi|302388530|ref|YP_003824352.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302199158|gb|ADL06729.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 519 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 38/257 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L+D +TG V+ + + PAS+TK+MTA +V + L +T S NA E Sbjct: 45 LMDADTGTVLWGQNIHNQYFPASITKVMTALLVI-----ENCSLDETVTFSHNAVYNVES 99 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN+ +G +++ + L L++KSAN+ A A+AE + + + F MN +K LG + Sbjct: 100 GSSNAGINEGDKLSVKDCLYALLLKSANESANALAEHVAGSTEAFADMMNTRAKELGCTN 159 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQI-------KGLEIKG 197 THF N G+ HYT+ DMA+++ R + P + Y+++ +GL I Sbjct: 160 THFSNPSGLNNPEHYTSPYDMALIA-RAAFNNPVFGEIDSTTYYKLPPNSINKEGLTI-- 216 Query: 198 KKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDR--- 249 YP + + G G KTG+T +G +V A + LI +IL G+ + Sbjct: 217 --YPGHKMMRKSTPYYYPGIVGGKTGYTTLAGNTLVTCAERNGLKLITIILKGSTPQYWS 274 Query: 250 NTRNKVSASLLSMGFYN 266 +T+N LL+ GF N Sbjct: 275 DTKN-----LLNFGFDN 286 >gi|228898767|ref|ZP_04063051.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228860859|gb|EEN05235.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 415 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 23 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 82 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 83 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 142 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 143 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 202 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 203 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 262 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 263 SSHTARFDETKKLYDYGFAN 282 >gi|219668772|ref|YP_002459207.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219539032|gb|ACL20771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 423 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 129/285 (45%), Gaps = 31/285 (10%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSIA---ETNKLPYYT-----LLDTNTGHVIAENYPDHPW 51 M++ + +I + + IF P L+ A +T P + L+D +G + D Sbjct: 1 MKRIIALITLLLYFFIFVPALTAAPETQTAAPPEISGEAAYLIDVQSGQTLYSKNGDQLM 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNAL 108 PAS TK+MT + + +T S+ +Y T + G ++L++ L Sbjct: 61 APASTTKIMTGLLGIELGNPEDI-----VTASETMLDYNTVYGTRIYLEPGEQLSLEDML 115 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L++ SAND AVAIAE + FV MN + +LGL T F N G+ + GH TA Sbjct: 116 YALLLNSANDAAVAIAEHISGNTAAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLITAH 175 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YP----NTN---WAVGTFLGADGMKTG 219 D+A ++ + P + Y + K I K P N N W T GMKTG Sbjct: 176 DLARIAQAAYAN-PVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTI---TGMKTG 231 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +T + +VASA + + +I VIL + R + A LL GF Sbjct: 232 YTSVAQNCLVASASRDGRDVIGVILKSPGREIYTDMQA-LLDYGF 275 >gi|312876024|ref|ZP_07736013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] gi|311797222|gb|EFR13562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] Length = 387 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 17/258 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP + ++ T ++ E D AS Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V + + I I A P S+ +KG + + + L L++ S Sbjct: 77 TKIMTAILVL-----ENCDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + +FV MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 132 NDAAVALAIATAGDVIRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAY 191 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 192 AMRN-PIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 250 Query: 231 SAIQGDQSLIAVILGALD 248 SA + D +I V+L A D Sbjct: 251 SACRDDFRVICVVLNAPD 268 >gi|253579997|ref|ZP_04857264.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp. 5_1_39B_FAA] gi|251848516|gb|EES76479.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp. 5_1_39BFAA] Length = 419 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 14/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG +I + AS TK+MT L + L + S A+ PS Sbjct: 184 LMNADTGQIIYGKNENVAHANASTTKIMTC-----ILALENCKLNEKVKFSPYAASIEPS 238 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G L + L L++ S ND AVAIAE + + KFV+ MN + +G + THF Sbjct: 239 KLYANAGEIFYLKDLLYSLMLPSHNDTAVAIAEHVSGSTAKFVKLMNKKAAEIGCTNTHF 298 Query: 153 MNAHGV-VQHGHYTTARDMA-ILSWRIKTDFPQYM---HYFQIKGLEIKGKKYP--NTNW 205 +G+ + HYTTA D+A I + IK + + Y+ L G+ Y TN Sbjct: 299 ATPNGLDAGYNHYTTASDLAKIAQYAIKKPMFRKLVSTGYYSFSNLNT-GRSYSIGTTNA 357 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G G GMKTG+T +G+ V + + I+V+LGA + R + S +LL+ + Sbjct: 358 LLGNVPGVQGMKTGYTNKAGYCFVGLSYSARGNTYISVVLGADSSSARWQDSRTLLTYAY 417 >gi|197302181|ref|ZP_03167240.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC 29176] gi|197298612|gb|EDY33153.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC 29176] Length = 464 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 31/234 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D N+G ++ D P PAS+TKL+T V K LT + S+++ +Y Sbjct: 72 VMDMNSGAILYGKQIDKPHYPASITKLLTTLVALDHAK-----LTDKVEFSQDSISFLQY 126 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT----EKKFVQHMNNTSKNL 145 ++ + G +TL+++L +++ SAN+++ A+AES+ K F++ MN S L Sbjct: 127 GDAHIGMRAGEELTLEDSLYAVLLASANEVSYAVAESVGKQMGGDYNTFIEAMNEESDAL 186 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRI------KTDFPQYMHYF-------QIKG 192 G + +H+ NA+G+ HYTTA DMA++ + +T H +++ Sbjct: 187 GCTGSHWTNANGLHDEQHYTTAHDMALIGAAVYQKEAFRTIAQSLTHQIPPTNLVNEVRT 246 Query: 193 LEIKGKK-YP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + K K +P N N+ + G KTG+T + +V A G+ L+AV+L Sbjct: 247 VNQKHKMLWPQNANY----YEYCKGGKTGYTDQARTTLVTMADNGELQLVAVVL 296 >gi|56808710|ref|ZP_00366431.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M49 591] Length = 401 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 26 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 85 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 86 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 144 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 145 SGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 204 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ LI VIL A D + Sbjct: 205 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DGS 263 Query: 251 TRNK 254 +N+ Sbjct: 264 DKNQ 267 >gi|163939383|ref|YP_001644267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163861580|gb|ABY42639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 374 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 13 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTA-----L 67 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 68 LAAESGKMKELVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 127 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 128 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 186 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 187 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 246 Query: 245 GA 246 A Sbjct: 247 SA 248 >gi|125973686|ref|YP_001037596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|256005769|ref|ZP_05430722.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281417842|ref|ZP_06248862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|125713911|gb|ABN52403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|255990269|gb|EEU00398.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281409244|gb|EFB39502.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|316940119|gb|ADU74153.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 1313] Length = 415 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 8/268 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 Q + M + + P ++AE ++ P L++ G ++ + P + + K+M Sbjct: 10 QCFTVAMMILFFSQSPVFAVAEPPEIKAPSAILMEVQRGQILYQKNPKLKLHVSCANKIM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + L++ + L T IT+SK A + + G +++ + +++ SAND A Sbjct: 70 TGLIA---LEKMQNQLNTNITVSKKAVSVEGAVLNLEVGGKYPVEDLIYSVLLGSANDSA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AE + EK FV+ MN ++ L + T+F N G+ YTTA D+A+L T Sbjct: 127 NVLAEYIGGDEKGFVELMNKKAQELEMKDTYFTNPTGLYDEKQYTTAYDLAVLIRYALTK 186 Query: 181 FPQYMHYFQIKGLE-IKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + F K + G + N+N ++ G DG KTG+ + +A + Q Sbjct: 187 SSTFNEMFSAKARPWVDGTQILINSNELFWSYDGVDGGKTGYNEIDRQTAITTATRNGQR 246 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266 LI ++L + + + + S LL GF N Sbjct: 247 LICIVLDSPEESMYDD-SVKLLDYGFLN 273 >gi|47095619|ref|ZP_00233227.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes str. 1/2a F6854] gi|254899730|ref|ZP_05259654.1| hypothetical protein LmonJ_07951 [Listeria monocytogenes J0161] gi|254913067|ref|ZP_05263079.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937448|ref|ZP_05269145.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47016049|gb|EAL06974.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes str. 1/2a F6854] gi|258610050|gb|EEW22658.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293591068|gb|EFF99402.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 272 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDERLNLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDSLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|206972675|ref|ZP_03233615.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH1134] gi|206732395|gb|EDZ49577.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH1134] Length = 438 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 46 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 106 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 166 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 225 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 226 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 285 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 286 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 317 >gi|229138063|ref|ZP_04266661.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|228645408|gb|EEL01642.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 407 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSI 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|15675077|ref|NP_269251.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes M1 GAS] gi|13622233|gb|AAK33972.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes M1 GAS] Length = 411 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 36 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 95 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 96 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 154 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 155 SGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 214 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ LI VIL A D + Sbjct: 215 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DGS 273 Query: 251 TRNK 254 +N+ Sbjct: 274 DKNQ 277 >gi|260899160|ref|ZP_05907555.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] gi|308110607|gb|EFO48147.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] Length = 181 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 3/139 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKNA Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +P S+ F + G+T+ + + + +I++S ND VA+AE + +E FV MN + LG+ Sbjct: 103 FPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGM 162 Query: 148 SATHFMNAHGVVQHGHYTT 166 +HF N HG+ Y+T Sbjct: 163 KNSHFANVHGLDNSELYST 181 >gi|218233929|ref|YP_002364864.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus B4264] gi|218161886|gb|ACK61878.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus B4264] Length = 438 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 46 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 106 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 166 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 225 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 226 FRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 285 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 286 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 317 >gi|168180431|ref|ZP_02615095.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] gi|182668648|gb|EDT80626.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] Length = 378 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ D +I V+L R Sbjct: 207 NFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINDNDIIIVVLNCTPR 261 >gi|315284191|ref|ZP_07872092.1| beta-lactamase [Listeria marthii FSL S4-120] gi|313612161|gb|EFR86402.1| beta-lactamase [Listeria marthii FSL S4-120] Length = 269 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G ++ E D ASLTKLMTA++V + KK + + + S + Sbjct: 42 GKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHG 157 T ++ + ++V SAND A + + L F Q MNN +K LGLS T F++A G Sbjct: 102 KRTWSVRDLYSAMLVMSANDAAETLGDRL--EGASFPQKMNNEAKKLGLSNKTKFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + + + + +G K +TN +G G D Sbjct: 160 LDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLESTNDLIGAIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDTDTAEKRFKDTEQLMKVGF 269 >gi|229176613|ref|ZP_04304020.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228606860|gb|EEK64274.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] Length = 415 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 23 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 82 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 83 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 142 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 143 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 202 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 203 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 262 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 263 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 294 >gi|195978797|ref|YP_002124041.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975502|gb|ACG63028.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 411 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 23/243 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 ++ TG ++ ASLTKL+T Y+V +K + + + +S+ A + Sbjct: 34 VEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVILSEYALQLATDP 93 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN F++ T+ ++ ++ SAN AVA+AE + +E FV M + G+ Sbjct: 94 DISNPAFEQ-RPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRD 152 Query: 150 THFMNAHGV---VQHGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + GH TARD+A+++ ++ DFP+ + L+ Sbjct: 153 YRLVNASGLNNSMLKGHLYPGSQPDDENQMTARDLALIAQQLLQDFPEVLTISSQAQLKW 212 Query: 196 KGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 K PN+N + G DG+KTG T +G ++A+A+Q + +I+VIL A +T Sbjct: 213 GEKDLPNSNLLLAGREMARTGVDGLKTGTTSQAGQTMIATAVQDNMRVISVILHADQSDT 272 Query: 252 RNK 254 + Sbjct: 273 DER 275 >gi|322411118|gb|EFY02026.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 412 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 ++ ++G ++ E D AS+TKL+T Y+V+ + K + +TIS E Y Sbjct: 35 VEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M+ K G+S Sbjct: 95 SISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKMGGTEPKFVDKMSQQLKEWGISD 153 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H + +ARD+AI++ + T+FP+ + Sbjct: 154 AKLVNATGLTNHFLGKNKYPKTEDEDENLFSARDLAIIARHLLTEFPEVLKITSKPSANF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRIITVVLNA 268 >gi|229027860|ref|ZP_04184018.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] gi|228733452|gb|EEL84276.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] Length = 443 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 42/319 (13%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 12 KRFIALLTMLTLACSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G T T+ + Sbjct: 72 ASMTKMMSEYLVHEAVAKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGTYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGH 163 + + SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+ H Sbjct: 132 AMAIFSANGATIALGEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPA 191 Query: 164 YTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV---- 207 TT A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPNKEFRPEKEKFQMLNWNWMLKGLS 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R R + L GF Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRFISVVIKTNSRQARFDETKKLYDYGF--- 308 Query: 268 TDRKKINYIIKDFYQQNLS 286 N+ +K Y+++ S Sbjct: 309 -----ANFEMKQLYKKDSS 322 >gi|323704094|ref|ZP_08115696.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum nigrificans DSM 574] gi|323530944|gb|EGB20881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum nigrificans DSM 574] Length = 373 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 38/257 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG + D PASLTK+MTA + +K L +T+ K A+ Sbjct: 27 LMEVATGRIYFAKQGDKRREPASLTKIMTAILAI-----EKGNLKDVVTVGKKAAAVSMG 81 Query: 93 NST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 G + L++ LK ++ SAND VAI E + + F++ MN+ +K LG+ T Sbjct: 82 QDIGLSPGDRLYLEDLLKAALMYSANDSTVAIGEHIAGSHDAFIKMMNDKAKVLGMKDTR 141 Query: 152 FMNAHGVVQHGHYTTARDMAILS---------------------W--RIKTDFPQYMHYF 188 + N +G HYTTA D+A L+ W + KT PQ Sbjct: 142 YANTNGYHNPNHYTTAIDLAKLTCYALKNPVFASFVRTREATITWLPKEKTGNPQ----- 196 Query: 189 QIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 +++ + + NTN + + F G +G+KTG T +G ++ASA + + L+AV+L + Sbjct: 197 EVQTETPRQRVIHNTNALLESNFEGINGVKTGTTPRAGKCLIASATREGRQLVAVVLNSP 256 Query: 248 DRNTRNKVSASLLSMGF 264 +R + +LL GF Sbjct: 257 NRWDD---ATNLLEYGF 270 >gi|229160328|ref|ZP_04288326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228623052|gb|EEK79880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 407 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 116/236 (49%), Gaps = 11/236 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 34 VDAKTGDMLYDKNARHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY---Q 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ Sbjct: 91 IEFQPGETIDRNTALMILMVLSANDVSFAIAEHIGGSVENFANMMNEKAKQLGATDSHFV 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTT DMA+++ ++ +P+ + K + + + + + T+ Sbjct: 151 TPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRISVTTSRQTVSIFNKSTYFEN 209 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 210 PYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMAEYS 261 >gi|228907005|ref|ZP_04070872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228852753|gb|EEM97540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 405 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 28 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFAFSQLALDQEKSNY 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 88 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARD 144 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 145 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 203 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 204 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 259 >gi|228956454|ref|ZP_04118252.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229039918|ref|ZP_04189684.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|229107699|ref|ZP_04237337.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|229125530|ref|ZP_04254564.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|229142819|ref|ZP_04271263.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|229148422|ref|ZP_04276680.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|296500847|ref|YP_003662547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|228635031|gb|EEK91602.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228640633|gb|EEK97019.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228657914|gb|EEL13718.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228675739|gb|EEL30945.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228727408|gb|EEL78599.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228803211|gb|EEM50031.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296321899|gb|ADH04827.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 415 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 23 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 82 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 83 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 142 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 143 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 202 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 203 FRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 262 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 263 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 294 >gi|228937316|ref|ZP_04099964.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950561|ref|ZP_04112697.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228970202|ref|ZP_04130863.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976772|ref|ZP_04137186.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|229067777|ref|ZP_04201096.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|229077286|ref|ZP_04209969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|229188298|ref|ZP_04315349.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228595166|gb|EEK52934.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228706009|gb|EEL58314.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228715330|gb|EEL67187.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228782934|gb|EEM31098.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228789503|gb|EEM37421.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228809104|gb|EEM55587.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228822341|gb|EEM68321.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937806|gb|AEA13702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 415 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 23 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 82 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 83 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 142 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 143 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 202 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 203 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 262 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 263 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 294 >gi|239625589|ref|ZP_04668620.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519819|gb|EEQ59685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 391 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG+V+ D + PAS+TKLMTA +V + L +T S A+ S Sbjct: 18 LLDAATGNVLFSKNGDTKFYPASITKLMTALLV-----AENCNLDDKVTFSSTATTNLES 72 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + G MT+ L L++KSAN++ A+AE + + KF + MN + LG + Sbjct: 73 GAVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTN 132 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 THF N HG+ HYTT RDMA+++ Sbjct: 133 THFTNPHGLNDTNHYTTPRDMALIA 157 >gi|228918964|ref|ZP_04082345.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840679|gb|EEM85939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 443 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 51 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 111 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 171 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 230 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 231 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 290 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 291 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 322 >gi|229016825|ref|ZP_04173754.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|229023030|ref|ZP_04179546.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228738278|gb|EEL88758.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228744477|gb|EEL94550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 362 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVMPIPTYAKLNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKELVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|229172207|ref|ZP_04299771.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228611195|gb|EEK68453.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 362 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA Sbjct: 1 MYASVIPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|303235381|ref|ZP_07321998.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna BVS033A4] gi|302493502|gb|EFL53291.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna BVS033A4] Length = 394 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 17/267 (6%) Query: 6 VIIAMAMLSNIF-PFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +I M +L+ +F P LS A++ +K+ Y ++ + + + P ASLTK+ Sbjct: 7 IIPLMLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAIASLTKI 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT +V + K L I I ++ S KKG +T+++ ++ +++ S ND Sbjct: 67 MTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMIVSGNDA 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRI 177 A +A + KFV+ MN + L L + F +A G ++ + +A+D+A L+ Sbjct: 127 ADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLAKLTTYT 186 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASAI-- 233 ++PQ ++Y + + L + +KY +G G DG KTG T +G+ ++ + Sbjct: 187 INNYPQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLITTMSLK 246 Query: 234 --QGDQSLIAVILGA---LDRNTRNKV 255 +++V++GA DRNT K+ Sbjct: 247 PNNPKNKVVSVLMGAPTKYDRNTYQKI 273 >gi|313616428|gb|EFR89354.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL S4-378] Length = 220 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 6/215 (2%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTKLMTA++V + KK + + + S + T ++ + ++V Sbjct: 5 ASLTKLMTAFLVLEAVDNKKLSWDEELDLIRLDDPSAVSLYAITQKRTWSVRDLYSAMLV 64 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGH--YTTARDM 170 SAND A + L + F Q MNN +K LGLS+ T F++A G+ G +T +D+ Sbjct: 65 MSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSSKTKFVSASGLDVDGKMAVSTTKDL 122 Query: 171 AILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +LS ++ + P+ + + +G +TN ++G+ G DG+KTGFT +G+ + Sbjct: 123 FLLSSKLISTHPEVLETTSKSSIITEEGATLESTNDSIGSIQGLDGLKTGFTDEAGYCFI 182 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +A + + +I+++L A R K + L+ +GF Sbjct: 183 GTAKRDGKRVISIVLDADTAKKRFKDTEKLMGIGF 217 >gi|296501957|ref|YP_003663657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|296323009|gb|ADH05937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 428 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 227 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 282 >gi|319651403|ref|ZP_08005532.1| DacB protein [Bacillus sp. 2_A_57_CT2] gi|317396934|gb|EFV77643.1| DacB protein [Bacillus sp. 2_A_57_CT2] Length = 374 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 20/227 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G ++ + + AS+TK+MTA + K + + +S A S Sbjct: 29 LMEQDSGRILYQKDANEVRRIASITKIMTAILAIESGK-----MDDMVKVSDRAVRAEGS 83 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G + L++ + L+++S ND AVAIAE + + + F MN ++ +G+ THF Sbjct: 84 SIYLKAGEKIKLEDLVYGLMLRSGNDSAVAIAEHVGGSLEGFGFLMNKKAEEIGMKNTHF 143 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----- 206 N HG+ H HY+TA DMA+L+ R + Y +I G ++ PN +W Sbjct: 144 ANPHGLDDHEDHYSTAYDMALLT-RYAMNNETYQ---KIAGTKVHRAPNPNESWDRVWKN 199 Query: 207 -----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A +G +LIAV L D Sbjct: 200 KNRLLTELYEYCTGGKTGYTKRAKRTLVTTASKGSLNLIAVTLNGPD 246 >gi|46909001|ref|YP_015390.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] gi|46882274|gb|AAT05567.1| putative D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] Length = 272 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRL--DGANFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGRRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|332313242|gb|EGJ26337.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. Scott A] Length = 244 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 14 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 73 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 74 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASG 131 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 132 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLD 191 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 192 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 241 >gi|255026482|ref|ZP_05298468.1| hypothetical protein LmonocytFSL_09353 [Listeria monocytogenes FSL J2-003] Length = 272 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEALYEQNADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN +G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|254824823|ref|ZP_05229824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293594063|gb|EFG01824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 272 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|47093271|ref|ZP_00231042.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes str. 4b H7858] gi|226225362|ref|YP_002759469.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes Clip81459] gi|254930914|ref|ZP_05264273.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|47018345|gb|EAL09107.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes str. 4b H7858] gi|225877824|emb|CAS06539.1| Putative D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582460|gb|EFF94492.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|328468283|gb|EGF39289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816] gi|328469045|gb|EGF39999.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220] Length = 272 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|254992369|ref|ZP_05274559.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-064] Length = 272 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN ++G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|229143980|ref|ZP_04272397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228639543|gb|EEK95956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] Length = 405 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 28 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 88 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 144 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 145 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 203 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 F + G KTGFT + +V + +I+V++ + R ++ L M Y Sbjct: 204 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEY 258 >gi|229060227|ref|ZP_04197596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228719109|gb|EEL70721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 338 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+DTN+G ++ + P A+L+KLMT Y+V L + K L + IS + + S Sbjct: 40 LIDTNSGEIVYKKNESTPIQSATLSKLMTEYIVMEQLHDGKIQLDESVQISNDVFQTETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 T+ + L L++ N A+ +AE + E F MN +K L LS + Sbjct: 100 PIHVTSNDKTTVRDLLNTLLLTGNNCSALELAEHIAGNEANFTMLMNEKAKQLKLSQPSP 159 Query: 152 FMNAHGVVQHGH---YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWA 206 F+N+ GV + TT D+A L+ ++ DFP + ++ + K + NTN Sbjct: 160 FLNSTGVNNEKNKQSITTTIDVANLAAQLVKDFPDVLSITKLTSYQFNFKDFQVFNTNKM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + G DG++T + ++ V +A QGD I+V+L A + NT + LL Sbjct: 220 IYSLNENIKLQGVDGLQTSLSTNGNYSFVGTAKQGDTRFISVVLDANEENTAFVETKKLL 279 Query: 261 SMGF 264 GF Sbjct: 280 QYGF 283 >gi|319947348|ref|ZP_08021581.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] gi|319746590|gb|EFV98850.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] Length = 429 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 35/245 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-------ISKN 85 ++D +TG ++ + D P + S+ KLM+ YV+ ++E + T IT IS+N Sbjct: 55 VVDAHTGAIVYGDNIDAPRDSGSMAKLMSVYVLLKAIQEGQLDYDTQITATETDVAISQN 114 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKN 144 SNS G+ + L ++ V S++ + IA + + KF+ MN ++ Sbjct: 115 QKL---SNSPIVAGAKYKVSTLLNMIFVPSSSAATIMIANKVSGGDPDKFLDLMNQRAQE 171 Query: 145 LGLSATHFMNAHGV---VQHGHY------------TTARDMAILSWRIKTDFPQYMHYFQ 189 +G++ T + N +G V G+Y TTARDMAIL++ + +FP+ ++Y + Sbjct: 172 IGMTNTKWNNPNGAPTAVLDGYYNPTRYDQHAINQTTARDMAILAYHMVNEFPEILNYTK 231 Query: 190 IKGLEI-KGKKYPNT----NWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + +G Y T N+++ + GADG+KTG + + +N + +G+Q + Sbjct: 232 NAKITLFEGTDYEETHENYNYSLEGGRYSLKGADGLKTGSSPTADYNYTLTVNRGNQRFV 291 Query: 241 AVILG 245 VI+G Sbjct: 292 QVIMG 296 >gi|89099074|ref|ZP_01171953.1| DacB [Bacillus sp. NRRL B-14911] gi|89086204|gb|EAR65326.1| DacB [Bacillus sp. NRRL B-14911] Length = 376 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 20/256 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L IA + +N+ + A + L++ +TG ++ E AS+TK+MTA Sbjct: 2 LLSCIAAVLAANLPAKVQAAYSASSGSAILMEQSTGRILYEKDAYTKKRIASITKIMTAI 61 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + K L T +S+ A S+ + G + L++ + L+++S ND AVAI Sbjct: 62 LAIESGK-----LDTKAKVSEKAVRAEGSSIYLQPGEKILLEDLVYGLMLRSGNDSAVAI 116 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFP 182 AE + + + FV MN ++ +G+ THF N HG+ H HY+TA DMA+L+ R + Sbjct: 117 AEHVGGSLEGFVYLMNKKAEEIGMINTHFANPHGLDDHEEHYSTAYDMAVLT-RYAMNNE 175 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWA----------VGTFLGADGMKTGFTCASGFNIVASA 232 Y +I G ++ PN +W + G KTG+T + +V +A Sbjct: 176 TYR---KIAGTKMHRAPNPNESWDRVWKNKNRLLTEMYEYCTGGKTGYTKRAKRTLVTTA 232 Query: 233 IQGDQSLIAVILGALD 248 + LIAV L D Sbjct: 233 SKDGLDLIAVTLNGPD 248 >gi|295399022|ref|ZP_06809004.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|312110372|ref|YP_003988688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] gi|294978488|gb|EFG54084.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|311215473|gb|ADP74077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] Length = 379 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 23/295 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L I+A+AML + P + A N++ + L++ ++G ++ E AS+TK+MTA Sbjct: 9 LFIVAVAMLFSCIPDQAKA-MNEVSAQSAVLMEQHSGRILLEKDAHTKRRIASITKIMTA 67 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + K + +T+S A S+ K+G + L + + L+++S ND AVA Sbjct: 68 ILALESGK-----MDDTVTVSARAVRTEGSSIYLKEGEKIKLRDLVYGLMLRSGNDAAVA 122 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAIL-SWRIKT- 179 IAE + + + FV MN + +G+ T F N HG+ HY+TA DMA+L + +K Sbjct: 123 IAEHVGGSVEGFVVLMNQKAAEIGMRNTEFANPHGLDDAENHYSTAYDMALLMQYAMKNK 182 Query: 180 DFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQG 235 +F + + + +GK + N N + G KTG+T + +V +A + Sbjct: 183 EFRKISRTKVYRAPDPEGKSERVWRNKNKLLTKLYEYCTGGKTGYTKRANRTLVTTASKD 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYN----KTDRKKINYIIKD-FYQQNL 285 LIAV L A D + ++ GF + K D+K++ I+D FY++N+ Sbjct: 243 GLDLIAVTLDAPDDWNDH---IAMYEYGFKHYVIAKVDQKRMIKKIRDSFYRENI 294 >gi|229024081|ref|ZP_04180554.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228737223|gb|EEL87745.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] Length = 338 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 26/251 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+DTN+G ++ + P A+L+KLMT Y+V L + K L + I +E Sbjct: 40 LIDTNSGEIVYKKNERTPIQSATLSKLMTEYIVMEQLHDGKIQLDESVKIRNEVFQTETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-A 149 P T K +T+ + L L++ N A+A+AE + E F MN +K L LS Sbjct: 100 PIQVTSKDNTTVR--DLLHALLLTGNNRSALALAEHIAGNEDNFTSLMNEKAKQLKLSQQ 157 Query: 150 THFMNAHGVVQHGH---YTTARDMAILSWRIKTDFP-------QYMHYFQIKGLEIKGKK 199 + F+N+ G+ + TTA D A ++ ++ D+P Q + F K +++ Sbjct: 158 SPFLNSTGINSEKNRQSITTAIDAAEIAAQLIKDYPDVLNITKQTSYRFTFKDVQV---- 213 Query: 200 YPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 NTN + + DG+++ + ++ V++A QGD I+V+L A + NT Sbjct: 214 -FNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYSFVSTANQGDTRFISVVLDANEENTAF 272 Query: 254 KVSASLLSMGF 264 + LL GF Sbjct: 273 VETKKLLQYGF 283 >gi|30019428|ref|NP_831059.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29894972|gb|AAP08260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 439 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 62 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 121 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 122 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 178 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 179 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 237 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 238 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 293 >gi|319939695|ref|ZP_08014054.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] gi|319811284|gb|EFW07590.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] Length = 415 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 33/272 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ + +L + P + +A+ ++ + +D TG ++ E + P AS+TK Sbjct: 3 MKKFIITLVTTLLIFLAPTV-LADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITK 61 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLL 111 L+TAY+V+ + + K L T + IS +YP + S + T++ L+ Sbjct: 62 LLTAYLVYEAIHQGKFTLQTSVDIS----DYPYQLTVNSDASNVPLEARKYTVEELLETS 117 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----VVQHGHY--- 164 ++ SAN A+A+AE + +EKKFV M + G+ T +NA G V+ H Sbjct: 118 LIASANSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKGTTIINASGLNNSVLGEEHIYPS 177 Query: 165 --------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LG 212 +A D+AI++ R+ D+P+ + Q G ++N + G Sbjct: 178 SGKEDENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLENMPAFRAG 237 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 DG+KTG + G + V + Q LI V+L Sbjct: 238 VDGLKTGSSDKGGSSFVGTIQQRGMRLITVLL 269 >gi|302386883|ref|YP_003822705.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302197511|gb|ADL05082.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 431 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 28/249 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ D + PAS+TKLMTA +V +K L +T SK A+ S Sbjct: 99 LMDASTGTLLYSKNGDTRYYPASITKLMTALLV-----AEKCSLPDTVTFSKAATTNLES 153 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + +G +T++ L L++KSAN++A +AE + + F MN +K LG + Sbjct: 154 GAVTLGLSEGDKLTVEQCLYGLMLKSANEVANGLAEHVSGSISAFSALMNVRAKELGCTG 213 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---------- 199 T+F+N +G+ GHYTTA DMA+++ R +I K Sbjct: 214 TNFVNPNGLNSSGHYTTAHDMALIA-RAAFQNETVKKVTSTLSYQIPATKNASARTVSMG 272 Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 YP + + G G KTG+T +G +V + LIAVI+ ++T Sbjct: 273 HKMLYPGDS---RYYPGVIGGKTGYTSLAGNTLVTCVEKNGIRLIAVIM--KSKSTHYAD 327 Query: 256 SASLLSMGF 264 + SLL GF Sbjct: 328 TKSLLDYGF 336 >gi|169823800|ref|YP_001691411.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328] gi|167830605|dbj|BAG07521.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328] Length = 394 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 131/267 (49%), Gaps = 17/267 (6%) Query: 6 VIIAMAMLSNIF-PFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +I M +L+ +F P LS A++ +K+ Y ++ + + + P ASLTK+ Sbjct: 7 IIPLMLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAIASLTKI 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT +V + K L I I ++ S KKG +T+++ ++ +++ S ND Sbjct: 67 MTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMIVSGNDA 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRI 177 A +A + KFV+ MN + L L + F +A G ++ + +A+D+A L+ Sbjct: 127 ADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLAKLTTYT 186 Query: 178 KTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233 ++PQ ++Y + + L + +KY T +G G DG KTG T +G+ ++ + Sbjct: 187 INNYPQVLNYTKTQKLVMPSRKYEAATTIPFLGKIEGVDGFKTGTTEKAGYCLITTMSLK 246 Query: 234 --QGDQSLIAVILGA---LDRNTRNKV 255 +++V++GA DRNT K+ Sbjct: 247 PNNPKNKVVSVLMGAPTKYDRNTYQKI 273 >gi|218231015|ref|YP_002366059.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus B4264] gi|218158972|gb|ACK58964.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264] Length = 428 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 227 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMADYS 282 >gi|254827380|ref|ZP_05232067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258599758|gb|EEW13083.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 272 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN +G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|116874163|ref|YP_850944.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116743041|emb|CAK22165.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 273 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 6/232 (2%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 N I+E D AS+TKLMT ++V +K+ + + + + S Sbjct: 40 NDKKAISEKNSDKVMPIASITKLMTTFLVLEAVKKGELSWDEKLDLIRLDDPSAVSLYAI 99 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNA 155 K T ++ + ++V SAND A + L + F + MN +K LGLS T F++A Sbjct: 100 TKKRTWSVRDLYSAMLVMSANDAAETLGNRLDGAD--FPKKMNKEAKKLGLSNKTEFVSA 157 Query: 156 HGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLG 212 G+ G +T +D+ LS + + +P+ + + KG K +TN +GT G Sbjct: 158 SGLDVDGERSVSTTKDLYKLSSELISTYPEVLDTTSKSSIITEKGAKIESTNDLIGTIPG 217 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTGFT +G+ + +A Q + +I+++L + R K + L+ +GF Sbjct: 218 LDGLKTGFTDEAGYCFIGTAKQNGKRVISIVLNSDTAENRFKDTEKLIKLGF 269 >gi|229149576|ref|ZP_04277808.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228633922|gb|EEK90519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] Length = 405 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 28 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 88 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 144 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 145 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 203 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 204 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 259 >gi|206968269|ref|ZP_03229225.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|206737189|gb|EDZ54336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] Length = 428 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 227 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 282 >gi|318059553|ref|ZP_07978276.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG] gi|318080461|ref|ZP_07987793.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF] Length = 315 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 125/282 (44%), Gaps = 27/282 (9%) Query: 8 IAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTG----HVIAENYPDHPWNPASL 56 +A A + P + ET K + LLD G + A D AS Sbjct: 34 LAQAATPDSTPHATATETGEQVAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMAST 93 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA VV + + +T E S + + G T+T L +++ S Sbjct: 94 TKIMTAIVVLKHPEWLERQITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSG 153 Query: 117 NDIAVAIAESLCKTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 D A A+A++ + + F+ MN ++ LGL THF + G+ Q +++TARD+ Sbjct: 154 ADAARALADTFGNGDTEEARISDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDL 213 Query: 171 AILSWR--IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTC 222 A L R ++ F + + Q K + NTN +GT+ GA G+KTG Sbjct: 214 AKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGP 273 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ +V +A + +++L+ VILG D R + +L GF Sbjct: 274 EDGYCVVFAAERDNRTLVGVILG--DDTGRFDDATKVLDWGF 313 >gi|222086014|ref|YP_002544546.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221723462|gb|ACM26618.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 403 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 129/284 (45%), Gaps = 21/284 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNP 53 +R+F V A L I ++A+ P + +++ +TG ++ D +P Sbjct: 2 LRRFTV--AFFFLVGIGCLPAVAQQAPPPAFDTKATQAFMVEASTGTILLAKNADQQISP 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKK--GSTMTLDNAL 108 ASL KLMT V+F +K + L T +S+NA P ST S + + + + Sbjct: 60 ASLAKLMTLDVIFDAIKRGEISLDTEYPVSENAWRTGGAPSRTSTMFAVLKSRVRVGDLI 119 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-----HGH 163 + + V+ AND + +AE + +EK+F + M ++ +G+ F N+ G+ G Sbjct: 120 QGIAVQQANDSCIVLAEGISISEKEFARRMTARAREIGMPRAVFTNSTGLPDANDQNGGG 179 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 + R++ L+ ++ ++P + Y N N + +G DG+ GF Sbjct: 180 KVSVRELVTLAQDLQQNYPDFYKYLAQPDFTWNKIFQRNRNPLLPLNIGVDGLGLGFADG 239 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSASLLSMGFYN 266 G++IVAS I+ D + + LG L + R + S +L G N Sbjct: 240 EGYSIVAS-IERDGRRLFLALGGLKTDKERTEESRRVLEWGLSN 282 >gi|254744208|ref|ZP_05201889.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Kruger B] Length = 438 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 34/299 (11%) Query: 2 RQFLVIIAMAML--SNIFPFLSI-AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + AET + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207 + +A+D+A L+ + D+P+ + +I E + +K N NW V Sbjct: 187 GXXADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 305 >gi|325662481|ref|ZP_08151084.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471177|gb|EGC74402.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium 4_1_37FAA] Length = 451 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 147/338 (43%), Gaps = 66/338 (19%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + + +TG ++ E D W PAS+TKLMT + + ++E K + +++ A Sbjct: 71 ITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDIAGR 130 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ + G+T T+ + L+IV S+ +A+ + KFV MN +K +G++ Sbjct: 131 YALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEIGMT 190 Query: 149 ATHFMNAHGVVQHGHY--------------TTARDMAIL-SWRIKTDFPQ---------- 183 T + N GV Y T+ +D A+L S+ +KT +P Sbjct: 191 HTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKT-YPDILTHTSSPEI 249 Query: 184 -------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 Y +F+ + ++G KY G DG+KTG + +GFN ++A + D Sbjct: 250 VVKEGTPYEEHFKSYQISLEGAKY--------GLKGTDGLKTGSSGRAGFNYSSTAKRQD 301 Query: 237 QSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 L+ +++G D R+ V +++ F K Y++ L Sbjct: 302 TRLVEIVMGVSDWTDQTGEELRHLVGNAIMEQAFE------------KYEYRKVLPKGTH 349 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESH---FIDFEK 325 I +E T+K++ + + ++ K K F+D E+ Sbjct: 350 QIGKEKIVTKKDLWDCVPKEEKVKFKMEDGKVFVDLER 387 >gi|228951756|ref|ZP_04113856.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957645|ref|ZP_04119393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043115|ref|ZP_04190843.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|229068926|ref|ZP_04202220.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|229078559|ref|ZP_04211118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|229108831|ref|ZP_04238436.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|229126691|ref|ZP_04255703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228656631|gb|EEL12457.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228674600|gb|EEL29839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|228704784|gb|EEL57211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228714210|gb|EEL66091.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|228726254|gb|EEL77483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|228802030|gb|EEM48899.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807926|gb|EEM54445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 405 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 28 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 88 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 144 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 145 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 203 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 204 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 259 >gi|205373775|ref|ZP_03226577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus coahuilensis m4-4] Length = 318 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 22/228 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ E + AS+TK+MTA V + L +T+S NA+ S Sbjct: 39 LMDQETGRVLYEKNAEQQMKIASITKIMTAIVAI-----ESDDLQDTVTVSSNAAGTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M L++ L L+++S ND AVAIAE + + + FV MN ++ +G+ T+F Sbjct: 94 SLYLVAGQKMKLEDLLYGLMLRSGNDSAVAIAEHVGGSLEGFVYLMNQKAEEIGMENTNF 153 Query: 153 MNAHGVVQHG-HYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-- 208 N HG+ H +T+ DMA+L + + + Q +I E+ PN +W Sbjct: 154 DNPHGLDDSDTHLSTSYDMALLMKYSMNNETFQ-----EISSTEVHKAPNPNGDWDYSWH 208 Query: 209 --------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A + + LIAV L D Sbjct: 209 NKNRLLTQLYEYCTGGKTGYTKLAKRTLVTTAEKDGEKLIAVTLNGPD 256 >gi|302523506|ref|ZP_07275848.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] gi|302432401|gb|EFL04217.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] Length = 315 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 125/282 (44%), Gaps = 27/282 (9%) Query: 8 IAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTG----HVIAENYPDHPWNPASL 56 +A A + P + ET K + LLD G + A D AS Sbjct: 34 LAQAATPDSTPHATATETGEQAAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMAST 93 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA VV + + +T E S + + G T+T L +++ S Sbjct: 94 TKIMTAIVVLKHPEWLERQITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSG 153 Query: 117 NDIAVAIAESLCKTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 D A A+A++ + + F+ MN ++ LGL THF + G+ Q +++TARD+ Sbjct: 154 ADAARALADTFGNGDTEEARISDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDL 213 Query: 171 AILSWR--IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTC 222 A L R ++ F + + Q K + NTN +GT+ GA G+KTG Sbjct: 214 AKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGP 273 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ +V +A + +++L+ VILG D R + +L GF Sbjct: 274 EDGYCVVFAAERDNRTLVGVILG--DDTGRFDDATKVLDWGF 313 >gi|331086263|ref|ZP_08335343.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406029|gb|EGG85552.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 445 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 149/335 (44%), Gaps = 60/335 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + + +TG ++ E D W PAS+TKLMT + + ++E K + +++ A Sbjct: 63 ITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDIAGR 122 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ + G+T T+ + L+IV S+ +A+ + KFV MN +K +G++ Sbjct: 123 YALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEIGMT 182 Query: 149 ATHFMNAHGVVQHGHY--------------TTARDMAIL-SWRIKTDFPQ---------- 183 T + N GV Y T+ +D A+L S+ +KT +P Sbjct: 183 HTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKT-YPDILTHTSSPEI 241 Query: 184 -------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 Y +F+ + ++G KY G DG+KTG + +GFN ++A + D Sbjct: 242 VVKEGTPYEEHFKSYQISLEGAKY--------GLKGTDGLKTGSSGRAGFNYSSTAKRQD 293 Query: 237 QSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 L+ +++G D R+ V +++ F K + +K+ + K +Q V Sbjct: 294 TRLVEIVMGVSDWTDQTGEELRHLVGNAIMEQAF-EKYEYRKV--LPKGTHQIGKEKIVT 350 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325 C ++E I + +M++ K F+D E+ Sbjct: 351 KKDLWDCVPKEEKIKF--KMEDGK----VFVDLER 379 >gi|312109161|ref|YP_003987477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] gi|311214262|gb|ADP72866.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] Length = 450 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 34/272 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D NTG ++ + D AS+TK+MT Y++ +KEK+ T S + + + Sbjct: 43 LVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVKEKRVKWDQQYTPSDYVYRLSQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +K T+ + + + SAN VAIAE + +E+ FV+ MN + LGL Sbjct: 103 RALSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKANQLGLK 162 Query: 149 ATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ + +AR +A L++ + ++P+ + + + Sbjct: 163 GYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVATLAYHLLKEYPEVLETASTPRKI 222 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G K N NW V + G DG+KTG+T +G+ +A + I V++ Sbjct: 223 FREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEFAGYCFTGTAERNGVRFITVVMN 282 Query: 246 ALDRNTRNKVSAS------LLSMGFYNKTDRK 271 A N ++ + A LL GF N + +K Sbjct: 283 A-KSNGKSTIEARFEQTRKLLDYGFSNYSMKK 313 >gi|218896308|ref|YP_002444719.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|218541762|gb|ACK94156.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] Length = 428 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ ++P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-NYPEILQAMNTKRTTVTTSRQTVSIFNKSN 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|326938999|gb|AEA14895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 428 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDVMYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 227 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMADYS 282 >gi|89097521|ref|ZP_01170410.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911] gi|89087817|gb|EAR66929.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911] Length = 387 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 138/281 (49%), Gaps = 27/281 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVI-AENYPDHPWNPA 54 M++FL + + ML+ ++A+ K P L+D+ + ++ ++N D + PA Sbjct: 1 MKKFLSALMVFMLTVHAGQSAVAKEEKEPAIVSEAAVLIDSQSNAILYSKNGSDRMY-PA 59 Query: 55 SLTKLMTA-YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 SLTK+ TA Y + KK L +T+S++A E + ++G TL + ++ +++ Sbjct: 60 SLTKIATAIYAI------KKGNLDDMVTVSRSAVETEGTKVYLEEGEKTTLRHLIEGMLI 113 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 S ND A AIAE + +++ +++N K + + THF N HG+ HYTTA DMA+ Sbjct: 114 NSGNDAAAAIAEHIDGNIEEYERNLNTFLEKEVHVHNTHFTNPHGLFDERHYTTAEDMAL 173 Query: 173 L-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------GADGMKTGFTCAS 224 + S+ +K + + + K L G+ + T + L G G KTGF S Sbjct: 174 ITSYALKNN--TFRTIYGTKELAWDGESWDTTIFTHHRMLKGEVPYTGITGGKTGFVNES 231 Query: 225 GFNIVASAIQGDQSLIAVILGA-LDRNTRNKVSASLLSMGF 264 + SA G L A+++ A R+ N + +L GF Sbjct: 232 KQTLATSAENGKIQLTAIVMKADFKRDIYND-TKTLFDYGF 271 >gi|21910291|ref|NP_664559.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS315] gi|28895868|ref|NP_802218.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes SSI-1] gi|21904486|gb|AAM79362.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS315] gi|28811118|dbj|BAC64051.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes SSI-1] Length = 415 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 32/276 (11%) Query: 4 FLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F V++ + LS I F + AE + +++ ++G V+ E P ASLTKL+ Sbjct: 13 FFVVLTCSGLSKIVLAADFQAGAE-----HAIVVEADSGRVLYEKDAKTPDAIASLTKLV 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 TAY+V +K + L+ + +S A E SN F K T ++ + L +V S+ Sbjct: 68 TAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVASS 126 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +E FV M + G+++ +NA G+ ++ Sbjct: 127 NSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEE 186 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218 + +A+D+A+++ + DFP+ + + + G + N + G DG+KT Sbjct: 187 NTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKT 246 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G T +G +V ++I+ +I VIL A D + +N+ Sbjct: 247 GTTDLAGHCLVVTSIENSMRVITVILNA-DGSDKNQ 281 >gi|70727253|ref|YP_254169.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435] gi|68447979|dbj|BAE05563.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435] Length = 430 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 42/293 (14%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPP- 91 + TG ++ + + W PAS+TKLMT Y+ + + + L + I+ S P Sbjct: 56 SQTGQILYDYQSNQKWYPASMTKLMTMYLTLEAVNKGELSLNDKVHITDKHYRMSTLPEL 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ +A+ + F MN +K LG+S TH Sbjct: 116 SNTKLYAGETYTISELLQITVSNSSNAAALILADEVSGNVNDFTDLMNKKAKALGMSNTH 175 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G Q +TA+D AIL + + P+ +H+ + G Sbjct: 176 FVNPTGAENKQLKEFAPSKYKNQDNTTSTAKDFAILDHHVIKETPKILHFTKQLAPTQHG 235 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N ++ + LG DG+KTG + + +N + + + + VI+GA D Sbjct: 236 VTYYTFNHSLEGAKMSLLGTDGLKTGSSDVADYNHTITTKRNNFRINQVIMGAGDYVNLG 295 Query: 249 -RNTRNKVSASLLSMGF----YNKTDRK---KIN---YIIKDFYQQNLSNEVP 290 RN + ++++ F Y K K KIN Y +KD NL + VP Sbjct: 296 GEKQRNMMGNAMMNRSFDQYSYKKVLSKGTHKINGKKYYVKD----NLYDVVP 344 >gi|225027210|ref|ZP_03716402.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353] gi|224955470|gb|EEG36679.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353] Length = 405 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 12/220 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + V+ + AS TK+MT + L+ +T S+ A+ P Sbjct: 64 LMDGDNQRVLFGKEEEKELPMASTTKIMTCLYAI-----EHGNLSDKVTFSRRAASAPKV 118 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + GS L + L L+++S ND+AVAIAE + + ++F + M +++ G T F Sbjct: 119 RLGARSGSQFLLSDLLYALMLESYNDVAVAIAEHIGGSVEQFCEDMTQEARDYGCYHTSF 178 Query: 153 MNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYM--HYFQIKGLEIKGKKYP--NTNWA 206 +G+ HYTT D+A+L+ +F + + F IK L+ G+ Y N N Sbjct: 179 ETPNGLDSAKHYTTCHDLALLTCLALKNENFCKIIKEQSFSIKELK-NGQSYSLNNKNLF 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + ++ GA G+KTG+T +G+ V + + LI+V+LG+ Sbjct: 238 LTSYNGAIGVKTGYTNNAGYCFVGAVKKDGHYLISVVLGS 277 >gi|167634406|ref|ZP_02392727.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|254740331|ref|ZP_05198022.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|167530294|gb|EDR93020.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] Length = 428 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ YTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNRYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|228964330|ref|ZP_04125449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795427|gb|EEM42915.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 407 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ ++P+ + K + + + + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-NYPEILQAMNTKRTTVTTSRQTVSIFNKSN 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 F + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|222095010|ref|YP_002529070.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|221239068|gb|ACM11778.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 428 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + Sbjct: 111 ---QIELQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGATD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + T Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKST 226 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 227 YFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADYS 282 >gi|228938491|ref|ZP_04101100.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971370|ref|ZP_04131997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977982|ref|ZP_04138362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228781770|gb|EEM29968.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228788406|gb|EEM36358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821228|gb|EEM67244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 407 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVMYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 206 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMADYS 261 >gi|251781775|ref|YP_002996077.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390404|dbj|BAH80863.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 412 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 ++ ++G ++ E D AS+TKL+T Y+V+ + K + +TIS E Y Sbjct: 35 VEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M+ K G+S Sbjct: 95 SISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKIGGTEPKFVDKMSQQLKEWGISD 153 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H + +ARD+AI++ + T+FP+ + Sbjct: 154 AKLVNATGLPNHFLGENKYPKTEDDDENLFSARDLAIIARHLLTEFPEVLKITSKPSANF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRVITVVLNA 268 >gi|323126583|gb|ADX23880.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 412 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 ++ ++G ++ E D AS+TKL+T Y+V+ + K + +TIS E Y Sbjct: 35 VEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M+ K G+S Sbjct: 95 SISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKIGGTEPKFVDKMSQQLKEWGISD 153 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H + +ARD+AI++ + T+FP+ + Sbjct: 154 AKLVNATGLPNHFLGENKYPKTEDEDENLFSARDLAIIARHLLTEFPEVLKITSKPSANF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRVITVVLNA 268 >gi|228899954|ref|ZP_04064194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228859685|gb|EEN04105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 407 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ ++P+ + K + + + + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-NYPEILQAMNTKRTTVTTSRQTVSIFNKSN 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 F + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|228920088|ref|ZP_04083437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839544|gb|EEM84836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 407 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 206 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 261 >gi|253578829|ref|ZP_04856100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849772|gb|EES77731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 421 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 29/252 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP----ITISKNASE 88 L+D +G V+ E + P AS TK++T V A+ +P + +S+NA+ Sbjct: 64 LMDGESGRVLYEKDGERPLANASTTKVLTCIV---------ALENSPGDDYVQVSQNAAS 114 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +KG L++ L L++KS ND AVAIAE + + F + +N +K +G Sbjct: 115 QPEVKLGLQKGEQYYLEDLLYSLMLKSHNDTAVAIAEHCGGSVEGFARMLNRKAKQIGCK 174 Query: 149 ATHFMNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGL---EIKGKK- 199 T+F+ +G+ H+TTA+D+A I+ + IK + ++H Q + EI GK+ Sbjct: 175 NTYFITPNGLDAEDENGKHHTTAKDLALIMRYAIKNE--TFLHIAQTRDYTFSEITGKRT 232 Query: 200 --YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN---K 254 N N + G KTG+T +G+ V + + ++ I +LG N + Sbjct: 233 FSVHNANAFLDMRDGVLAGKTGYTSQAGYCYVCAWEKEGKTFIVSLLGCGWPNHKTYKWS 292 Query: 255 VSASLLSMGFYN 266 + LL G YN Sbjct: 293 DTEKLLDFGDYN 304 >gi|229177783|ref|ZP_04305157.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|229189457|ref|ZP_04316474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228594048|gb|EEK51850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228605747|gb|EEK63194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] Length = 405 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS TK++TA ++ K + + + + + S Y Sbjct: 28 FATTIDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 88 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 144 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + + Sbjct: 145 SHFVTPNGLHDPNHYTTPYDMAMITKGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSN 203 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 F + G KTGFT + +V + +I+V++ + R ++ L M Y+ Sbjct: 204 FFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMAS----QRPEIYEDLKQMAEYS 259 >gi|330685765|gb|EGG97400.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus epidermidis VCU121] Length = 429 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 47/310 (15%) Query: 2 RQFLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLD------------------TNTGHVI 42 R F++II M + NI PF + + P +D + G ++ Sbjct: 3 RIFILIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQDGQIL 62 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKK 98 E D W PAS+TKLMT Y+ +K+KK L + ++ S P SN+ Sbjct: 63 YEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKMTDREYQMSTLPELSNTKLYP 122 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G T+ + L++ + S+N A+ + E + F MN +K LG+ TH++N G Sbjct: 123 GQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNPSGA 182 Query: 159 VQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 T+ARD AIL + + P+ + + + G Y N Sbjct: 183 ENTRLKSFAPSKYKKTENTTTSARDYAILDQHVINETPKILDFTKQLAPTTHGVTYYTFN 242 Query: 205 WAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNK 254 ++ + G DG+KTG + + +N + + + VILGA D RN Sbjct: 243 HSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQRNM 302 Query: 255 VSASLLSMGF 264 + +L+ F Sbjct: 303 MGNALMERSF 312 >gi|160941724|ref|ZP_02089051.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC BAA-613] gi|158435221|gb|EDP12988.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC BAA-613] Length = 381 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 109/226 (48%), Gaps = 21/226 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90 +D TG V+ D + PAS+TKLMTA +V + L +T S A+ E Sbjct: 1 MDAATGTVLFSKNGDKQFYPASITKLMTALLV-----AENCSLDDKVTFSATATTNLEAG 55 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G MT+ L L++KSAN++ A+AE + + KF + MN + LG + T Sbjct: 56 AVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTNT 115 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR------IKT--DFPQYMHYFQIK---GLEIK-GK 198 HF N HG+ HYTT DMA+++ +KT Y IK GL + G Sbjct: 116 HFTNPHGLNDSNHYTTPHDMALIARAAFQNDVVKTVASTRTYTLPATIKNSSGLTVTIGH 175 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 K N N A + G G KTG+T +G +V + + LIAVI+ Sbjct: 176 KMLNPNDAR-YYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVIM 220 >gi|229170862|ref|ZP_04298467.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|228612597|gb|EEK69814.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 417 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 25 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 84 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 85 ASLSNVALENGGIYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLK 144 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 145 NYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 204 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 205 FRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 264 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 265 SSHTARFDETKKLYDYGFAN 284 >gi|239629143|ref|ZP_04672174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519289|gb|EEQ59155.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 530 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 25/259 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D +TG V+ D + PAS+TK++TA +V ++ L ++ S + E Sbjct: 47 VMDADTGTVLYGKNMDQQYYPASITKILTALIVL-----ERCDLDEMVSFSHDDVYNVEA 101 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ +G +T+ + L L++ SAN+ A A+A + + ++F + MN + +LG + Sbjct: 102 GSSSAGIDEGDVLTVRDCLYALMLASANESANALACHVSGSREEFAKLMNEKAASLGCTG 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP------- 201 +HF N G+ HYTTA DMA+++ R P+++ + ++ K+ P Sbjct: 162 SHFANPSGLNDENHYTTAHDMALIA-REAIKNPEFLAINGTRSYKLAPTKRTPEGGYVAN 220 Query: 202 -----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N N +V + GA KTG+T +G +V A + +LIAV+L + + Sbjct: 221 HHKMLNKNESV-YYPGAFAGKTGYTSLAGNTLVTCAKKDGMTLIAVVLNG--HQSHYSDT 277 Query: 257 ASLLSMGFYNKTDRKKINY 275 ++ F N K ++Y Sbjct: 278 KAMFDFAFRNFQSLKAVDY 296 >gi|121535743|ref|ZP_01667545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121305642|gb|EAX46582.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 378 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 13/237 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ + PAS TK+MT V + L +T S NA+ S Sbjct: 34 VIEASTGKVLYAKDAETKRYPASTTKMMTLIVAL-----EHGNLNDIVTTSANAASTEGS 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L + L +++ S ND VA+AE + + +KF + M + +G + T+F Sbjct: 89 SLWLAPGEQLKLLDMLYGVMLVSGNDATVAVAEHISGSVEKFARLMTEKAHAIGATNTNF 148 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV 207 N+ G+ HYTTA D+A I ++ K F + + K + GK + N N + Sbjct: 149 TNSSGLPDPNHYTTAHDLAKIAAYGYKNPFFAEIVSTKHKVIPWPGKDHDRDLYNENKML 208 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + GA+G+KTG+T A+G +V+ A + + LIAV+ LD + S +LL GF Sbjct: 209 WLYDGANGVKTGYTEAAGPCLVSGAKRNNIQLIAVV---LDSERMWEESMALLDYGF 262 >gi|325681439|ref|ZP_08160965.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] gi|324106929|gb|EGC01219.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] Length = 387 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 27/278 (9%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-----------DTNTGHVIAENYPDHPWNP 53 ++ I + +L + P AET +P LL + +TG V+ E D Sbjct: 9 IMFICLTVLCGLLPDRVCAET--VPVEDLLASMPADEIIAVECSTGKVLMEKNSDITAEV 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 + L KLM + ++ + L +T S NA+ P K +T+D LK + V Sbjct: 67 SHLAKLMLVLLTAEKIENGELSLDDVVTASANANSQPAPQIWLDKNEKITVDELLKSITV 126 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +AND AVA+AE + T + V MN ++ L + +T + + G+ +H + A D A+L Sbjct: 127 SNANDGAVALAEHIFGTSESAVAEMNRKAELLDMRSTTYADVCGIDEH-TLSDAADTAVL 185 Query: 174 -SWRIKTD-----FPQYMHYFQIKGLEIKGK-KYPNTNWAVGTFLGADGMKTGFTCASGF 226 S +K + F ++ Y + GK + N N V ++ G GMK T A+G Sbjct: 186 ASELVKHEMLIPYFTSWLEYVR------DGKAELVNLNRPVRSYKGITGMKACSTSAAGE 239 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V +A + + VI+G R + +S LL M F Sbjct: 240 CAVVTAQRSGMDIAVVIIGGDKRENVDDMSKKLLDMCF 277 >gi|295402720|ref|ZP_06812662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|294975251|gb|EFG50887.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] Length = 450 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 34/272 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D NTG ++ + D AS+TK+MT Y++ +KEK+ T S + + + Sbjct: 43 LVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVKEKRVKWDQQYTPSDYVYRLSQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN +K T+ + + + SAN VAIAE + +E+ FV+ MN + LGL Sbjct: 103 RSLSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKANQLGLK 162 Query: 149 ATHFMNAHGVVQ------HGHYT--------TARDMAILSWRIKTDFPQYMHYFQI-KGL 193 F+N+ G+ H T +AR +A L++ + ++P+ + + + Sbjct: 163 GYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVATLAYHLLKEYPEVLETASTPRKI 222 Query: 194 EIKGK----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G K N NW V + G DG+KTG+T +G+ +A + I V++ Sbjct: 223 FREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEFAGYCFTGTAERNGVRFITVVMN 282 Query: 246 ALDRNTRNKVSAS------LLSMGFYNKTDRK 271 A N ++ + A LL GF N + +K Sbjct: 283 A-KSNGKSTIEARFEQTRKLLDYGFSNYSMKK 313 >gi|291548692|emb|CBL24954.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14] Length = 478 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 23/230 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D N+G V+ + PAS+TKL+T V A LT + S+++ EY Sbjct: 82 VMDMNSGAVLYSKQIEKKHYPASITKLLTTLVALD-----NAELTDTVEFSQDSISFLEY 136 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT----EKKFVQHMNNTSKNL 145 ++ G +++++AL +++ SAN+++ A+AES+ K F+Q MN+ S+ L Sbjct: 137 GDAHIGMTPGEQISMEDALYAVLLASANEVSYAVAESVGKKMGGGYDTFIQAMNDESEKL 196 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRI------KTDFPQYMHYFQIKGLEIKGKK 199 G + +H+ NA+G+ HYTTA DMA + + +T H + L + + Sbjct: 197 GCTGSHWTNANGLHDEQHYTTAHDMARIGAAVYQKEAFRTISQSLSHTIPVTNLVNEERT 256 Query: 200 YPNTN---WAVGT--FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + W + G KTG+T + +V A GD L+AV+L Sbjct: 257 FQQKHKMLWPQNDNYYEYCKGGKTGYTDQARTTLVTMADNGDMQLVAVVL 306 >gi|110801081|ref|YP_696655.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens ATCC 13124] gi|110675728|gb|ABG84715.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens ATCC 13124] Length = 423 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 10/221 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD +TG +I D PAS TK+MT+ + F + + P T A + Sbjct: 42 YAVTLDYDTGEIIYAKGIDEKAYPASTTKVMTSLL---FAEHASKNDSFPYTADAKAQQP 98 Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 N++F G M ++ +K L++ SAND A IA+ L + +KF MN+ K LG Sbjct: 99 YTLNNSFGPIPVGEGMNANDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNT 203 L THF+ +G+ HY+TA D+A IL K + + + + GKK N Sbjct: 159 LKNTHFVTPNGLHNDDHYSTAYDLAVILQNAYKNPWVSETMALKDSDITVNGKKVLLENR 218 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N +G G G KTGFT +G +V+ + + +I +L Sbjct: 219 NKELG-IDGNIGGKTGFTTPAGRCLVSVYERNGRKIIGAVL 258 >gi|168208677|ref|ZP_02634302.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens B str. ATCC 3626] gi|170713013|gb|EDT25195.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens B str. ATCC 3626] Length = 423 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 10/221 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD +TG +I D PAS TK+MT+ + F + + P T A + Sbjct: 42 YAVTLDYDTGEIIYAKGIDEKAYPASTTKVMTSLL---FAEHASKNDSFPYTADAKAQQP 98 Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 N++F G M ++ +K L++ SAND A IA+ L + +KF MN+ K LG Sbjct: 99 YTLNNSFGPIPVGEGMNANDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNT 203 L THF+ +G+ HY+TA D+A IL K + + + + GKK N Sbjct: 159 LKNTHFVTPNGLHNDDHYSTAYDLAVILQNAYKNPWVSETMALKDSDITVNGKKVLLENR 218 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N +G G G KTGFT +G +V+ + + +I +L Sbjct: 219 NKELG-IDGNIGGKTGFTTPAGRCLVSVYERNGRKIIGAVL 258 >gi|291542266|emb|CBL15376.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63] Length = 374 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 25/230 (10%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-----ISKNASEY 89 D NT VI D PAS TK+MT+ + E+ A + +T +++ +S Y Sbjct: 41 DNNT--VICSKNADERMKPASTTKIMTSLITL----EEAASCNSEVTFKQEMVAEGSSMY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 K G + L + +++ S ND A A A ++ + +KF Q MN +K +G++ Sbjct: 95 ------LKVGEKVRLSDLASGMMMASGNDAANAAAYTISGSSEKFSQRMNEKAKQIGMTN 148 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-SWRIKT-DFPQYM--HYFQIKGLEIKGKK--YPNT 203 T+F+ G+ HY++A+DMA+L S+ ++ DF ++ LE K KK Y N Sbjct: 149 TNFVTPSGLDDDNHYSSAKDMALLMSYALENDDFANLTAKKSVTVEFLEPKTKKTAYANH 208 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N + + G KTG+T +G +V+SA + +L+ V L DRN N Sbjct: 209 NRLLSLYPYCTGGKTGYTTVAGRCLVSSAKKDGVTLVCVTLN--DRNDWN 256 >gi|229016624|ref|ZP_04173563.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|229022835|ref|ZP_04179357.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228738470|gb|EEL88944.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228744711|gb|EEL94774.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 407 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 182 >gi|302379860|ref|ZP_07268343.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ACS-171-V-Col3] gi|302312338|gb|EFK94336.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ACS-171-V-Col3] Length = 384 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 128/263 (48%), Gaps = 17/263 (6%) Query: 10 MAMLSNIF-PFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 M +L+ +F P LS A++ +K+ Y ++ + + + P ASLTK+MT Sbjct: 1 MLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAIASLTKIMTYV 60 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V + K L I I ++ S KKG +T+++ ++ +++ S ND A + Sbjct: 61 LVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMIVSGNDAADEL 120 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDF 181 A + KFV+ MN + L L + F +A G ++ + +A+D+A L+ ++ Sbjct: 121 AVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLAKLTTYTINNY 180 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA--VGTFLGADGMKTGFTCASGFNIVASAI----QG 235 PQ ++Y + + L + +KY +G G DG KTG T +G+ ++ + Sbjct: 181 PQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLITTMSLKPNNP 240 Query: 236 DQSLIAVILGA---LDRNTRNKV 255 +++V++GA DRNT K+ Sbjct: 241 KNKVVSVLMGAPTKYDRNTYQKI 263 >gi|270292858|ref|ZP_06199069.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143] gi|270278837|gb|EFA24683.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143] Length = 414 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 41/280 (14%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TK++T Y+V+ L++ L+TP+ I S+YP Sbjct: 36 VEATTGKILYEKDANQPVEIASITKILTVYLVYEALEQGTISLSTPVDI----SDYPYQL 91 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 92 TTNSEASNVPMEARKYTVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 151 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + D+PQ + + Sbjct: 152 IKDATIVNTTGLNNETLGNNIYPGSKKDEENKLSAYDVAIIARNLIRDYPQVLEITKKSS 211 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + + +I V+L A Sbjct: 212 STFAGMEIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTTEKGMRIITVVLNADQ 271 Query: 249 RNT----RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 +N+ R ++SLL D NY +K Q+ Sbjct: 272 QNSNPYARFTATSSLL--------DYITSNYALKTIVQKG 303 >gi|333022589|ref|ZP_08450653.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] gi|332742441|gb|EGJ72882.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] Length = 315 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 27/282 (9%) Query: 8 IAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTG----HVIAENYPDHPWNPASL 56 +A A + P + ET K + LLD G + A D AS Sbjct: 34 LAQAATPDSTPHATATETGEQAAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMAST 93 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA VV + +T E S + + G T+T L +++ S Sbjct: 94 TKIMTAIVVLKHPEWLDRQITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSG 153 Query: 117 NDIAVAIAESLCKTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 D A A+A++ + + F+ MN ++ LGL THF + G+ Q +++TARD+ Sbjct: 154 ADAARALADTFGNGDTEEARITDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDL 213 Query: 171 AILSWR--IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTC 222 A L R ++ F + + Q K + NTN +GT+ GA G+KTG Sbjct: 214 AKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGP 273 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+ +V +A + +++L+ VILG D R + +L GF Sbjct: 274 EDGYCVVFAAERDNRTLVGVILG--DDTGRFDDATKVLDWGF 313 >gi|255281347|ref|ZP_05345902.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255268304|gb|EET61509.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 398 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 9/227 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P LLD TG ++AE PASLTK+MTA ++ + P I Sbjct: 150 PCAVLLDAGTGEMLAEKNGSAQMYPASLTKIMTALLLVEYCGNLDGTAWIPTDIYDQLYA 209 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + F G +TL + L +++ S + + A + +E+ FVQ MN + LG++ Sbjct: 210 EGASVAGFLPGEEVTLRDLLYGILLPSGAECCLTAARYIAGSEESFVQIMNQRAAELGMT 269 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL------SWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 THF N+ G+ HY++A D+A L + + F +Y Q +G + + Sbjct: 270 NTHFTNSTGLQDAQHYSSAEDIAALLQYALQNASFREAFTSEYYYVQPTQEHPEGFTFWS 329 Query: 203 TNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 T ++ G D G KTG+T +G + + G + I V GA Sbjct: 330 TLFSQAQASGDDRILGGKTGYTQEAGLCLASLLRVGGREYILVTAGA 376 >gi|325263833|ref|ZP_08130566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324030871|gb|EGB92153.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 425 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 34/272 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 +++ NTGHV+ + P W PAS++KLMT + + ++E + L T + ++ A Sbjct: 30 IVEINTGHVLWQENPQISWEPASMSKLMTILLAYDAIQEGEFSLDTQVPVTDKYLDIAGR 89 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ G++ T+ + L+IV S+ +A+ + KFV +N + +LG+ Sbjct: 90 YSLSNNKMLAGASYTVAELIDLIIVPSSAAATYMLADLIEPDPDKFVTLLNERASSLGMK 149 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 T + N GV + + TT D A+L +P +++ + + Sbjct: 150 NTRYYNPVGVPNELLVPYQPVNASLTDVNVTTPEDYALLCCYFVKTYPDILNHTKHPKIV 209 Query: 195 IK-GKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 IK G Y + A + G DG+KTG + +GFN ++A++G+ L+ +++G Sbjct: 210 IKEGTPYEEKFDTYQYSLEGAKYSLKGTDGLKTG-SNQNGFNYSSTALRGNTRLVEIVMG 268 Query: 246 A------LDRNTRNKVSASLLSMGFYNKTDRK 271 R+ + +++ F N RK Sbjct: 269 VSKWEDQAGEEMRHLIGNAIMEQAFQNFEYRK 300 >gi|167755756|ref|ZP_02427883.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402] gi|167704695|gb|EDS19274.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402] Length = 411 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ + +++ + P ++ + + Y +D +G V+ D PAS+TK+M Sbjct: 8 FLLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPASMTKVM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 T + + + K TT IT S E S++ F+ G T+T ++ L I+ S D Sbjct: 68 TVILALELMDDMKK--TTVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPSGAD 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 A+A +LC +++ FV MN ++ L L THF+N G+ HYTT DMA++ Sbjct: 126 ATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALI 180 >gi|269122125|ref|YP_003310302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella termitidis ATCC 33386] gi|268616003|gb|ACZ10371.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella termitidis ATCC 33386] Length = 357 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 45/322 (13%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNT-GHVIAEN--YPDHPWNPASLTKLMTAY 63 I+++ +L ++F F Y LL +T G++ ++ Y P AS+TK+MT Sbjct: 5 ILSLMLLLSVFIF-------SYDYKELLVGDTKGNIYVQDNIYEVRPL--ASMTKVMTIL 55 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + K+ L +TIS AS+ P G T T++ LK ++S+N+ A A+ Sbjct: 56 LTLDKVNAKEISLDDNVTISYTASKVP-YGVKMNAGETFTVEELLKATAIRSSNNAAYAL 114 Query: 124 AESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILS 174 AE + + FV MN ++++GL + + HG+ + G+ +A+ + Sbjct: 115 AEYVSHGDVYDFVDKMNERARSMGLDSLRYCTPHGLPPGNTGTCMDQGNAYDIYKLAMTA 174 Query: 175 WRIKTDFPQYM-------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + +P+YM Y + +++K TN +G G DG+KTG+ A+G N Sbjct: 175 IQ----YPEYMKIADKSSDYIKDGTIQLKA-----TNNLLGKVEGVDGLKTGYHKAAGSN 225 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 IV +A + +IAV++G+ R+ V A ++ F++ + KI K +SN Sbjct: 226 IVLTAERDGLRMIAVVMGSEKSKNRDTVGADEIN-SFFSTYKKSKIVDTNKAIATIKISN 284 Query: 288 EVPNI--SEEVCTTQKEIINYN 307 + ++ SE+V +EIIN N Sbjct: 285 KDYSLYPSEDV----EEIININ 302 >gi|259046993|ref|ZP_05737394.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] gi|259036312|gb|EEW37567.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] Length = 471 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 125/283 (44%), Gaps = 47/283 (16%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT---TPITISKNASEYPP-SNS 94 G ++ + PD +PASL+KLMT ++V+ +KE K L+ P + S+ SN Sbjct: 78 GEILWQENPDRAVDPASLSKLMTIFIVYDAIKEGKISLSDKVVPTATDEAISKITALSNV 137 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G ++ +K+ ++ S+N + ++ + +FV MN +K LG++ T F Sbjct: 138 PLTAGVEYPVEELVKMALLPSSNAATILLSHLVNDNSDEFVDLMNQKAKELGMTNTKFEG 197 Query: 155 AHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGK 198 A G V GHY TTARD+A + + P+ Y + L + G Sbjct: 198 ATGAVAEDFQGHYTVKRHSMNQPNQTTARDLAKMVIALYKSHPEITQYTRNSTLTVMSGT 257 Query: 199 KYP----NTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----- 245 Y NTN +V G L G G+KTG + GFN + + L+ ++LG Sbjct: 258 PYAQTIKNTNHSVQGDLLAYPGIIGLKTGTSERDGFNYIGIYQKDGVELLDIVLGVSEWT 317 Query: 246 -ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 A R+K+ +LLS Y++K + Q L N Sbjct: 318 SAAGEYNRHKIGNALLS-------------YVLKQYEAQTLFN 347 >gi|30261982|ref|NP_844359.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47527245|ref|YP_018594.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184822|ref|YP_028074.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|65319265|ref|ZP_00392224.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] gi|165870241|ref|ZP_02214897.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167632885|ref|ZP_02391211.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|167638465|ref|ZP_02396742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|170686389|ref|ZP_02877610.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|177650876|ref|ZP_02933773.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190566291|ref|ZP_03019209.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|227815230|ref|YP_002815239.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|229601545|ref|YP_002866353.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|254684545|ref|ZP_05148405.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721303|ref|ZP_05183093.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254734848|ref|ZP_05192560.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] gi|254741249|ref|ZP_05198937.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|254755503|ref|ZP_05207537.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254760039|ref|ZP_05212063.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|30256608|gb|AAP25845.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47502393|gb|AAT31069.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178749|gb|AAT54125.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|164714129|gb|EDR19650.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167513766|gb|EDR89135.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|167531697|gb|EDR94362.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|170669465|gb|EDT20207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|172083337|gb|EDT68398.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190562426|gb|EDV16393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|227006117|gb|ACP15860.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] gi|229265953|gb|ACQ47590.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 285 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 12/176 (6%) Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVV 159 T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S F NA G+ Sbjct: 106 TLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAKFANASGLQ 165 Query: 160 Q-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKYPNTNWAVG 208 + G T TA D+A L++ + D+P+ + ++ + I N N Sbjct: 166 EPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDMLNKNNKAL 225 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGFT ++G+ +A QGD +I V++G + R + L++ F Sbjct: 226 YIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLMTYAF 281 >gi|170706123|ref|ZP_02896585.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|170129125|gb|EDS97990.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] Length = 285 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 12/176 (6%) Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVV 159 T+T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K L +S F NA G+ Sbjct: 106 TLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAKFANASGLQ 165 Query: 160 Q-HGHYT--TARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKYPNTNWAVG 208 + G T TA D+A L++ + D+P+ + ++ + I N N Sbjct: 166 EPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDMLNKNNKAL 225 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGFT ++G+ +A QGD +I V++G + R + L++ F Sbjct: 226 YIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTETNKLMTYAF 281 >gi|294501119|ref|YP_003564819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|294351056|gb|ADE71385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] Length = 382 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 34/234 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ D AS+TK+MTA + K + +T+S +A S Sbjct: 38 LMEQKSGRVLYAKNADQVSRIASITKIMTAILAIESGK-----INKTVTVSHSAVGVEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +G + L + + L+++S ND AVAIAE++ +E FV MN ++ +G++ T F Sbjct: 93 SVYLVEGEKIKLKDLVYGLMLRSGNDAAVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTF 152 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYF-------QIKGLEIKGKKYPNTN 204 N HG+ H H +TA DMA+L M Y +I G ++ K+P Sbjct: 153 QNPHGLDDHENHRSTAHDMALL-----------MRYAMNNKIFKEISGTKVYRMKHPEEK 201 Query: 205 WA----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 W + G KTG+T + +V +A + LIAV + A D Sbjct: 202 WDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTATKDGMDLIAVTINAPD 255 >gi|229172016|ref|ZP_04299581.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228611359|gb|EEK68616.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 407 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG V+ H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDVLYNKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + F MN +K LG + Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGNVENFAHMMNEKAKQLGATD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 +HF+ +G+ HYTT DMA+++ ++ +P+ + K + + + T Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSSQTVSIFNKST 205 Query: 210 FLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G KTGFT + +V + +I V++ + R ++ L M Y Sbjct: 206 YFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMADY 260 >gi|169343528|ref|ZP_02864527.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens C str. JGS1495] gi|169298088|gb|EDS80178.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens C str. JGS1495] Length = 423 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASL 56 + L+ +++++ + I + AE ++ Y LD TG +I D PAS Sbjct: 9 LSSILIALSVSLFTPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYPAST 68 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK---GSTMTLDNALKLLIV 113 TK+MT+ + F + + P T A + N++F G M ++ +K L++ Sbjct: 69 TKVMTSLL---FAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-I 172 SAND A IA+ + + +KF MNN K LGL THF+ +G+ HY+TA D+A I Sbjct: 126 FSANDAAAVIADGVAGSAEKFSVMMNNEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 L K + + + + GKK N N +G G G KTGFT +G +V+ Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELG-INGNIGGKTGFTTPAGRCLVS 244 Query: 231 SAIQGDQSLIAVIL 244 + + +I +L Sbjct: 245 VYERNGRKIIGAVL 258 >gi|16804849|ref|NP_466334.1| hypothetical protein lmo2812 [Listeria monocytogenes EGD-e] gi|224502774|ref|ZP_03671081.1| hypothetical protein LmonFR_09674 [Listeria monocytogenes FSL R2-561] gi|16412312|emb|CAD01025.1| lmo2812 [Listeria monocytogenes EGD-e] Length = 272 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN +G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|266622661|ref|ZP_06115596.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288865598|gb|EFC97896.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 480 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 128/273 (46%), Gaps = 36/273 (13%) Query: 1 MRQFLV-IIAMAMLSNIF-------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M+ FL I+ ++SN F P + ++D ++G ++ D P+ Sbjct: 1 MKHFLKKILCWTLISNCFLMTAYAAPAWPAGPDIQAEAGVVIDMDSGAILGGKAYDTPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK----KGSTMTLDNAL 108 PAS+TKL+TA +V K L +T S +A S+S K +G +++++ L Sbjct: 61 PASITKLLTALLVLEHSK-----LDEMVTFSNSAVYNVESDSGNKLNVAEGDQLSVEDCL 115 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L+V S N A A+AE + +++ FV+ MN+ + LG +HF N G+ Y TAR Sbjct: 116 YSLLVHSCNQAANALAEHVAGSQEAFVKMMNDKAAALGCKDSHFDNPSGLNGDTQYVTAR 175 Query: 169 DMAILSW-------------RIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFL-- 211 DMA +S +K FP ++ +GL I + K NTN + + Sbjct: 176 DMAAISRAAFAEPDIIRISAALKHTFPPTIN--NPEGLTIYAENKLILNTNDSSSQYYYP 233 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G KTG+ +G +V A + + LI+VIL Sbjct: 234 PVKGGKTGYLLKAGNTLVTYAEKDGKRLISVIL 266 >gi|331091250|ref|ZP_08340091.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404697|gb|EGG84236.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium 2_1_46FAA] Length = 400 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 20/228 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ E D AS TK+MT + ++ L + S+NA++ P Sbjct: 39 LMDADSGRILFEKNGDQRRAMASTTKIMTCILAL-----ERGGLEGEVVASENAAKQPKV 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +KG T L + L L+++S ND AV IAE + + +KF + MN +K +G T+F Sbjct: 94 HLGVEKGETFRLRDLLYSLMLESHNDSAVMIAEKVGGSVEKFAKMMNEKAKEIGCINTYF 153 Query: 153 MNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 + +G+ H TTA ++A I+S+ I T P+ + I G + K + Y Sbjct: 154 ITPNGLDAKDDTGKHSTTAGELAKIMSYCI-TQSPKKEEFLAITGQKSYQFTNMEKTRTY 212 Query: 201 --PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N N + GA KTGFT +G+ V + + D++ + +LG Sbjct: 213 ICHNHNAFLEMMEGAISGKTGFTGEAGYCYVGALRRNDRTFVVALLGC 260 >gi|297584338|ref|YP_003700118.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] gi|297142795|gb|ADH99552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] Length = 363 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 17/228 (7%) Query: 31 YTLLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D TG ++ +N+ + + PASLTK+ TA + L L +TIS A Sbjct: 39 YAVIDAKTGTLLDGKNHREEMY-PASLTKIATAVIAIEHLD-----LDEEVTISNKAIHA 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLS 148 + ++G ++T++ L +++ SAND ++A+AE + + + F + MN +N +GL Sbjct: 93 DGTRVYLEEGESLTVEQLLYGIMISSANDASIALAEHIAGSVEAFSRLMNTYIQNEIGLE 152 Query: 149 ATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPN 202 T+F N HG+ H TTA DMA I+ + ++ D + + +++Q +G + + + Sbjct: 153 NTYFTNPHGLFDEEHVTTAEDMARIMKYALENDTYRELAEKTDYHWQSEGWDTRIFHHHA 212 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 F+ A K GF SG + S IQ LI V L A R+ Sbjct: 213 MRRHYD-FVTAG--KNGFVSQSGLTLATSGIQDQTELIVVNLNAPSRS 257 >gi|15674245|ref|NP_268420.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp. lactis Il1403] gi|12725334|gb|AAK06361.1|AE006455_7 D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp. lactis Il1403] Length = 435 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 38/285 (13%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K T + IS A E Sbjct: 44 IDASSGKILYAQNSDDASTRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQN 103 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN AVA+AE + +E KFV M K+ G++ Sbjct: 104 SNASNIPLAQNGQYTVKDLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGIT 163 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 164 DSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEILQI--TKKTE 221 Query: 195 IK---GKK----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I G + NTN + F G DG+KTG T + Q +I V+ Sbjct: 222 IPFDTGNEAKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVV 281 Query: 244 LGALDRNTRNKVSASLLSM------GFYNKTDRKKINYIIKDFYQ 282 L A D N +L + G + T + N + DF + Sbjct: 282 LEATDPAADNSTPFTLTNQLMNYVYGHWRTTSLVQKNQSLDDFKE 326 >gi|281492939|ref|YP_003354919.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis subsp. lactis KF147] gi|281376591|gb|ADA66077.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis subsp. lactis KF147] Length = 435 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 38/285 (13%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K T + IS A E Sbjct: 44 IDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQN 103 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN AVA+AE + +E KFV M K+ G++ Sbjct: 104 SNASNIPLAQNGQYTVKDLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGIT 163 Query: 149 ATHFMNAHGVVQ---HGH-----------YTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 164 DSHLVNASGLPNDDLNGHIYPGSGASATNIMSAKAVATLSYHLIQDFPEILQI--TKKTE 221 Query: 195 IK---GKK----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I G + NTN + F G DG+KTG T + Q +I V+ Sbjct: 222 IPFDTGNEAKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVV 281 Query: 244 LGALDRNTRNKVSASLLSM------GFYNKTDRKKINYIIKDFYQ 282 L A D N +L + G + T + N + DF + Sbjct: 282 LEATDPAADNSTPFTLTNQLMNYVYGHWRTTSLVQKNQSLDDFKE 326 >gi|325663285|ref|ZP_08151735.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470739|gb|EGC73969.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium 4_1_37FAA] Length = 547 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 84/145 (57%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D N+G ++ D PAS+TK+MTA V + + LT + ++ + EY Sbjct: 123 IMDMNSGAILYAKNIDEKEFPASITKIMTALVAL-----ENSELTDKVHFTEESVAFLEY 177 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ + G +T+++AL +++ SAN+++ AIA+++ F++ MN ++ LG + Sbjct: 178 GDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEELGCTN 237 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 THF N HG+ HY +ARDMA+++ Sbjct: 238 THFTNPHGLHDEEHYVSARDMALIA 262 >gi|167773011|ref|ZP_02445064.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM 17241] gi|167664944|gb|EDS09074.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM 17241] Length = 763 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 22/251 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ E + PAS+TK+MT + K + T + +E P Sbjct: 66 LVDADTGQILLEKNMNKKMYPASITKIMTCLLAMERAKPGDVVTVT----DEVVAEVPRD 121 Query: 93 NS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G +T++ ++V+SAND A +A + + + F MN+ +K LG T Sbjct: 122 TTHIALTGGEQLTVEQLEYAMMVESANDAASVLAAHISGSTQAFAMLMNDRAKELGAKDT 181 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNT 203 HF NA+G+ HYT+A DMA+++ R +P++ EI + ++ N Sbjct: 182 HFTNANGLPDPSHYTSAYDMALIT-RAAMQYPEFRSLAGTTSYEIPPTNKQSETRRLNNR 240 Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDRNTRNKVSA 257 N+ T+ GA KTG+T +G +V A + +LI +++ G +D + S Sbjct: 241 NYMFTLNDTYPGAFAGKTGWTEEAGHTLVTLAERDGVTLICIVMHSDGVVDAQYID--ST 298 Query: 258 SLLSMGFYNKT 268 ++L GF N T Sbjct: 299 AILDYGFDNYT 309 >gi|229166209|ref|ZP_04293969.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228617307|gb|EEK74372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 407 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + +H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDMLYDKNANHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 182 >gi|284800301|ref|YP_003412166.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578] gi|284993486|ref|YP_003415254.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923] gi|284055863|gb|ADB66804.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578] gi|284058953|gb|ADB69892.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923] Length = 272 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRL--DGANFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN +G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|295706466|ref|YP_003599541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] gi|294804125|gb|ADF41191.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] Length = 382 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 34/234 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +G V+ D AS+TK+MTA + K + +T+S +A S Sbjct: 38 LMEQKSGRVLYAKNADQVSRIASITKIMTAILAIESGK-----INKTVTVSHSAVGVEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +G + L + + L+++S ND AVAIAE++ +E FV MN ++ +G++ T F Sbjct: 93 SVYLIEGEKIKLKDLVYGLMLRSGNDAAVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTF 152 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYF-------QIKGLEIKGKKYPNTN 204 N HG+ H H +TA DMA+L M Y +I G ++ K+P Sbjct: 153 QNPHGLDDHENHRSTAHDMALL-----------MRYAMNNKIFKEISGTKVYRMKHPEEK 201 Query: 205 WA----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 W + G KTG+T + +V +A + LIAV + A D Sbjct: 202 WDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTATKDGMDLIAVTINAPD 255 >gi|225871200|ref|YP_002747147.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] gi|225700604|emb|CAW95134.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] Length = 411 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 23/243 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 ++ TG ++ ASLTKL+T Y+V +K + + +T+S+ A + Sbjct: 34 VEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVTLSEYALQLATDP 93 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN F++ T+ ++ ++ SAN AVA+AE + +E FV M + G+ Sbjct: 94 DISNPAFEQ-RPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRD 152 Query: 150 THFMNAHGV---VQHGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + GH TARD+A+++ ++ DFP+ + L+ Sbjct: 153 YLLVNASGLNNSMLKGHLYPGSQPDDENQMTARDLALIAQQLIQDFPELLTISSQPQLKW 212 Query: 196 KGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 K P++N + G DG+KTG T +G ++A+A+Q + +I+VIL A +T Sbjct: 213 GEKALPSSNLLLAGREMGRAGVDGLKTGTTSQAGQTMIATAVQDNMRVISVILHADQSDT 272 Query: 252 RNK 254 + Sbjct: 273 DER 275 >gi|320354992|ref|YP_004196331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus propionicus DSM 2032] gi|320123494|gb|ADW19040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus propionicus DSM 2032] Length = 422 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 7/215 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G + E D+P PAS K++TA + L+ I +S+ A++ P S Sbjct: 183 VMDAESGESLFEKMADNPRQPASTIKIVTAMIALKSLRNDDV-----INVSRRAADMPSS 237 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ + +++ SAND +VA+AE + +E KF M ++K G T Sbjct: 238 KIFLDPNRNYQANDLINAVLLASANDASVALAEKIAGSEDKFATLMTLSAKMWGAKNTIC 297 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVGTFL 211 A G+ G +TARD+A L +R ++ + + + GK N N A+ Sbjct: 298 RTASGLTADGQQSTARDLANL-FRFAMQHDEFSRRMRERSICTSYGKTLRNHNKALWRLD 356 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GA G KTG+T A+ V + Q+++ I+G+ Sbjct: 357 GAVGGKTGYTIAARQTYVGQFSREGQTIVVAIMGS 391 >gi|227872772|ref|ZP_03991092.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841371|gb|EEJ51681.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 464 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D TG V+ E D PAS+TK+MTA VV + A L +T S +A + Sbjct: 46 VVDAETGAVLYEKNGDVREYPASITKVMTALVVL-----EHASLEDKVTFSHDAVYNVDR 100 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN+ ++G +T+++ L L++KSAN+ A A+AE + + + F + MN +K LG + Sbjct: 101 GSSNAQIEEGDVLTVNDCLHALLLKSANEAANALAEHVAGSREAFAEMMNEKAKELGCTG 160 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 THF N G+ HYTTARDMA++ Sbjct: 161 THFQNPSGLQDENHYTTARDMALIG 185 >gi|110801499|ref|YP_699085.1| penicillin-binding protein 5* precursor [Clostridium perfringens SM101] gi|110682000|gb|ABG85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens SM101] Length = 291 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 18/204 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++TA V ++ + L +TISK A+ S F+ G +T+ L L+ Sbjct: 82 ASTTKILTALVAINY-----SDLDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KS ND A+AIAE + + + F MN+ ++ LGL ++F + HG+ H+++A D+A+L Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYDLAVL 196 Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASG 225 S ++ F + +I G + G + Y N N + A+G KTG+T +G Sbjct: 197 MSKAMEEPF-----FREISGTKEVGAEKYNFTRSYSNINKMLWRLPNANGGKTGYTGQAG 251 Query: 226 FNIVASAIQGDQSLIAVILGALDR 249 +V+S +++I V+L R Sbjct: 252 KCLVSSVDHNGRNIIIVVLNCPTR 275 >gi|110800730|ref|YP_696485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens ATCC 13124] gi|168206144|ref|ZP_02632149.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens E str. JGS1987] gi|168210835|ref|ZP_02636460.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens B str. ATCC 3626] gi|168215430|ref|ZP_02641055.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens NCTC 8239] gi|169343584|ref|ZP_02864583.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens C str. JGS1495] gi|110675377|gb|ABG84364.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens ATCC 13124] gi|169298144|gb|EDS80234.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens C str. JGS1495] gi|170662405|gb|EDT15088.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens E str. JGS1987] gi|170711129|gb|EDT23311.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens B str. ATCC 3626] gi|182382120|gb|EDT79599.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens NCTC 8239] Length = 291 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 18/204 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++TA V ++ + L +TISK A+ S F+ G +T+ L L+ Sbjct: 82 ASTTKILTALVAINY-----SDLDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KS ND A+AIAE + + + F MN+ ++ LGL ++F + HG+ H+++A D+A+L Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYDLAVL 196 Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASG 225 S ++ F + +I G + G + Y N N + A+G KTG+T +G Sbjct: 197 MSKAMEEPF-----FREISGTKEVGAEKYNFTRSYSNINKMLWRLPNANGGKTGYTGQAG 251 Query: 226 FNIVASAIQGDQSLIAVILGALDR 249 +V+S +++I V+L R Sbjct: 252 KCLVSSVDHNGRNIIIVVLNCPTR 275 >gi|237734723|ref|ZP_04565204.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7] gi|229382051|gb|EEO32142.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7] Length = 352 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 8/174 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +++ + +++ + P ++ + + Y +D +G V+ D PAS+TK+MT Sbjct: 9 LLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPASMTKVMT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 + + + K TT IT S E S++ F+ G T+T ++ L I+ S D Sbjct: 69 VILALELMDDMKK--TTVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPSGADA 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 A+A +LC +++ FV MN ++ L L THF+N G+ HYTT DMA++ Sbjct: 127 TRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALI 180 >gi|331086847|ref|ZP_08335924.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410013|gb|EGG89448.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 557 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 84/145 (57%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D N+G ++ D PAS+TK+MTA V + + LT + ++ + EY Sbjct: 133 IMDMNSGAILYAKNIDEKEFPASITKIMTALVAL-----ENSELTDKVHFTEESVAFLEY 187 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ + G +T+++AL +++ SAN+++ AIA+++ F++ MN ++ LG + Sbjct: 188 GDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEELGCTN 247 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 THF N HG+ HY +ARDMA+++ Sbjct: 248 THFTNPHGLHDEEHYVSARDMALIA 272 >gi|315650677|ref|ZP_07903733.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] gi|315487054|gb|EFU77380.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] Length = 466 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 45/238 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + + +TG + E D + PAS+TK+MT L ++A L IT S++A+ S Sbjct: 44 VYNADTGEFLYEKNGDKQFYPASITKIMTG-----LLTVEQANLDDTITFSRSATTNLES 98 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST G TM++ +AL +++ SAN+++ +AE + + F MNN +K LG + Sbjct: 99 GSTSLGVVAGDTMSVRDALYGMMLASANEVSNGLAEHVGGSVAGFANMMNNRAKELGATH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQY----------MH 186 T+F+N +G+ H TTA+DMA++ ++R T FP MH Sbjct: 159 TNFVNPNGLNNQNHVTTAKDMALIAAAAFRNPTFRAVAGASSYSFPATKSKPTPKLIKMH 218 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G EI ++ G G KTG+T ++G +V +A + LI V+L Sbjct: 219 HKMVTG-EI-------------SYAGVIGGKTGYTKSAGNTLVTAAERNGVRLIVVVL 262 >gi|139473812|ref|YP_001128528.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] gi|134272059|emb|CAM30298.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] Length = 411 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 32/276 (11%) Query: 4 FLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F V++ + LS I F AE + +++ ++G V+ E P ASLTKL+ Sbjct: 9 FFVVLTCSGLSKIVLAADFQVGAE-----HAIVVEADSGRVLYEKDAKTPDAIASLTKLV 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 TAY+V +K + L+ + +S A E SN F K T ++ + L +V S+ Sbjct: 64 TAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVASS 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----VVQHGHYT------- 165 N A+A+AE + +E FV M + G+++ +NA G V++ Y Sbjct: 123 NSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEE 182 Query: 166 ---TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218 +A+D+A+++ + DFP+ + + + G + N + G DG+KT Sbjct: 183 NTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKT 242 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G T +G +V ++I+ +I VIL A D + +N+ Sbjct: 243 GTTDLAGHCLVVTSIENGMRVITVILNA-DGSDKNQ 277 >gi|71903459|ref|YP_280262.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] gi|71802554|gb|AAX71907.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] Length = 451 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 26/266 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 76 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 135 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 136 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 194 Query: 149 ATHFMNAHG----VVQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G V++ Y +A+D+A+++ + DFP+ + + + Sbjct: 195 SGKILNASGLPNEVLKDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVN 254 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LD 248 G + N + G DG+KTG T +G +V ++I+ +I VIL A D Sbjct: 255 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSD 314 Query: 249 RNTRNKVSASLLSMGFYNKT-DRKKI 273 +N + + + + ++T R+KI Sbjct: 315 KNQNTRFEQANRLLDYVDRTYCRRKI 340 >gi|168204840|ref|ZP_02630845.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens E str. JGS1987] gi|170663667|gb|EDT16350.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens E str. JGS1987] Length = 423 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 10/223 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD +TG +I D PAS TK+MT+ + F + + P T A + Sbjct: 42 YAVTLDYDTGEIIYAKGIDEKAYPASTTKVMTSLL---FAEHASKNDSFPYTADAKAQQP 98 Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 N++F G M ++ +K L++ SAND A IA+ + + +KF MN+ K LG Sbjct: 99 YTLNNSFGPIPVGEGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNT 203 L THF+ +G+ HY+TA D+A IL K + + + + GKK N Sbjct: 159 LKNTHFVTPNGLHNDDHYSTAYDLAVILQNAYKNPWVSETMALKDSDITVNGKKVLLENR 218 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N +G G G KTGFT +G +V+ + + +I +L + Sbjct: 219 NKELG-IDGNIGGKTGFTTPAGRCLVSVYERNGRKIIGAVLNS 260 >gi|94988566|ref|YP_596667.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|94992388|ref|YP_600487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS2096] gi|94542074|gb|ABF32123.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|94545896|gb|ABF35943.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS2096] Length = 451 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 76 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 135 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 136 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSEPHFVNQMREQLSHWGIT 194 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+A+++ + DFP+ + + + Sbjct: 195 SGKILNASGLPNEVLKDHRYPGSTLEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVN 254 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ +I VIL A D + Sbjct: 255 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNA-DGS 313 Query: 251 TRNK 254 +N+ Sbjct: 314 DKNQ 317 >gi|255528214|ref|ZP_05395035.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|255508087|gb|EET84506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] Length = 411 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 18/229 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG+V+ D + PAS TKLMTA L +K L +T+ KN S Sbjct: 38 LMDAITGYVLYGKNEDSAYPPASTTKLMTA-----LLTLEKCKLDDVVTVGKNPPLVDGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + + + L L+++S ND A A+AE + + F MN + LG +HF Sbjct: 93 KIYLFEGEQLKVRDLLYGLMLQSGNDCAEALAEHVGGSIDNFAVLMNKRALELGCRDSHF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYP--NTNW 205 +N G+ H T+ARD+A++ R ++ P+Y +++I K P N N Sbjct: 153 VNPSGLYDEKHKTSARDLALI-MRELSNKPEYTQIASTSFYEIPPTNKSAVKRPLWNENK 211 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + G G KTG+T S + V+ + + Q LI ++ D+ Sbjct: 212 LIQKSSQLYYDGCKGGKTGYTTQSLHSYVSYSTRNGQRLIVALVHDKDK 260 >gi|313621847|gb|EFR92532.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL J1-023] Length = 272 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 10/251 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P +S++ +N Y++ G + E D ASLTKLMTA++V + + Sbjct: 25 PTVSLS-SNAAAVYSV---ENGIAVYEKNADKVMPIASLTKLMTAFLVLEAVDNNELSWD 80 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + + + S + T ++ + ++V SAND A + L + F Q Sbjct: 81 EELDLVRLDDPSAVSLYAITQKRTWSVRDLYNAMLVMSANDAAETLGNRL--DDANFPQK 138 Query: 138 MNNTSKNLGLSA-THFMNAHGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGL- 193 MNN +K LGLS T F++A G+ G +T +D+ +LS ++ + P+ + + Sbjct: 139 MNNEAKKLGLSKKTKFVSASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKSSII 198 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +G +TN ++G+ G DG+KTGFT +G+ + +A + + +I+++L A R Sbjct: 199 TEEGATLESTNDSIGSIQGLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDAGTAEKRF 258 Query: 254 KVSASLLSMGF 264 K + L+ +GF Sbjct: 259 KDTEKLMEIGF 269 >gi|282891874|ref|ZP_06300353.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498134|gb|EFB40474.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 427 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 124/279 (44%), Gaps = 29/279 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS--------K 84 L++ TG ++ E + PAS+TK+ TA V F +K ++ T S K Sbjct: 35 LMNAETGKILYEKNIHTSYFPASITKIATAAFVLKFFSDKLDVIVTAEQDSIGWVTEEAK 94 Query: 85 NASEYP-------PSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S Y P + KG ++L++ L L++ SAND A IA+ + T FV Sbjct: 95 RKSNYTLPAYWLVPGGTHMGIMKGEQLSLEDLLHGLMLVSANDSANVIAQYVGGTVPDFV 154 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-QIKGLE 194 +N +K G T F N HG+ H TTA DMA+L+ + P + F +K Sbjct: 155 DQLNAYAKQAGCQHTTFHNPHGLHHPEHKTTAYDMALLA-KEALSIPAFCKMFGTVKYTR 213 Query: 195 IKGKK---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K K +P + A G KTG+T + N+V +A D++LIAV+L Sbjct: 214 PKTNKQESSVLVQNHPLLKQGKFYYAKALGAKTGYTNLAAHNLVVAARDKDRTLIAVLLK 273 Query: 246 ALDRNTRNKVSASLLSMGFYN-KTDRKKINYIIKDFYQQ 283 +R+ K + L F K +R + I+ F Q+ Sbjct: 274 TKERDQLFKDAIKLFEAAFQQPKVERLLLRQGIQKFTQK 312 >gi|18310783|ref|NP_562717.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|168214376|ref|ZP_02640001.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens CPE str. F4969] gi|18145464|dbj|BAB81507.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|170714164|gb|EDT26346.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens CPE str. F4969] Length = 291 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 18/204 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++TA V ++ + L +TISK A+ S F+ G +T+ L L+ Sbjct: 82 ASTTKILTALVAINY-----SDLDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KS ND A+AIAE + + + F MN+ ++ LGL ++F + HG+ H+++A D+A+L Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYDLAVL 196 Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASG 225 S ++ F + +I G + G + Y N N + A+G KTG+T +G Sbjct: 197 MSKAMEEPF-----FREISGTKEVGAEKYNFTRSYSNINKMLWRLPNANGGKTGYTGQAG 251 Query: 226 FNIVASAIQGDQSLIAVILGALDR 249 +V+S +++I V+L R Sbjct: 252 KCLVSSVDHNGRNIIIVVLNCPTR 275 >gi|311068836|ref|YP_003973759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310869353|gb|ADP32828.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 383 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 18/220 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA + K + +T+S NA S Sbjct: 39 VIDGASGRVLFAKDEHEKRRIASITKIMTAVLAIESGK-----MEETVTVSANAVRTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K+G + L + + L+++S ND A AIAE + + FV MN ++ +G+ T F Sbjct: 94 AIYLKEGQKVKLKDLVYGLMLRSGNDAAAAIAEHVGGSLGGFVYMMNQKAEQIGMENTRF 153 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQ-IKGLEIKGKKYPNTNWA---- 206 N HG+ H HY+TA DMAIL T + + +Q I G ++ + + W Sbjct: 154 QNPHGLDDHENHYSTAYDMAIL-----TKYAMKLKDYQTISGTKVYKAETMESVWKNKNK 208 Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G + + G KTG+T + +V++A + LIAV + Sbjct: 209 LLTGLYQYSTGGKTGYTKLAKRTLVSTASKDGTDLIAVTI 248 >gi|94990442|ref|YP_598542.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] gi|94543950|gb|ABF33998.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] Length = 451 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 76 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 135 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 136 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 194 Query: 149 ATHFMNAHG----VVQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G V++ Y +A+D+A+++ + DFP+ + + + Sbjct: 195 SGKILNASGLPNEVLKDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVN 254 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ +I VIL A D + Sbjct: 255 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNA-DGS 313 Query: 251 TRNK 254 +N+ Sbjct: 314 DKNQ 317 >gi|260437596|ref|ZP_05791412.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292809949|gb|EFF69154.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 443 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 46/271 (16%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K Y L+D ++G V+ + D PAS TK+MTA L + ++ +T SK A Sbjct: 37 KSQYIVLMDADSGEVLYQRNMDKKCYPASTTKMMTA-----LLTIENTSMSDVVTYSKAA 91 Query: 87 --SEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S P +N G +T++ +L L+++SAND+A +AE + T F MN+ + Sbjct: 92 VDSVSPGDANVGIAVGEQLTVEQSLYCLMLRSANDVAYGLAEYVGGTASGFASMMNDKAA 151 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS------------------WRI-----KTD 180 LG +THF N G+ HY+T DMA++ ++I + Sbjct: 152 ALGAVSTHFSNPSGLTNEFHYSTPYDMALIGRACFNNKTLVNIMSYTGVYKIGKTNTNNN 211 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Y H FQ+ +KG +Y + + G KTG+T A+G +V+ A ++ I Sbjct: 212 IRYYTHRFQM----LKGGEYE--------YRYSKGGKTGYTDAAGNCLVSFA---EKDGI 256 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 ++ ++ + + S+ +Y RK Sbjct: 257 RLVCSVMNSTASGRYTDSIALFDYYLNNYRK 287 >gi|18310958|ref|NP_562892.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|168212989|ref|ZP_02638614.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens CPE str. F4969] gi|182624439|ref|ZP_02952223.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens D str. JGS1721] gi|18145640|dbj|BAB81682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|170715489|gb|EDT27671.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens CPE str. F4969] gi|177910442|gb|EDT72819.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens D str. JGS1721] Length = 423 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 10/221 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD +TG +I D PAS TK+MT+ + F + + P T A + Sbjct: 42 YAVTLDYDTGEIIYAKGIDEKAYPASTTKVMTSLL---FAEHASKNDSFPYTADAKAQQP 98 Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 N++F G M ++ +K L++ SAND A IA+ + + +KF MN+ K LG Sbjct: 99 YTLNNSFGPIPVGEGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNT 203 L THF+ +G+ HY+TA D+A IL K + + + + GKK N Sbjct: 159 LKNTHFVTPNGLHNDDHYSTAYDLAVILQNAYKNPWVSETMALKDSDITVNGKKVLLENR 218 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N +G G G KTGFT +G +V+ + + +I +L Sbjct: 219 NKELG-IDGNIGGKTGFTTPAGRCLVSVYERNGRKIIGAVL 258 >gi|331266509|ref|YP_004326139.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3 [Streptococcus oralis Uo5] gi|326683181|emb|CBZ00799.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3 [Streptococcus oralis Uo5] Length = 413 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|229057005|ref|ZP_04196399.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228720282|gb|EEL71858.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 407 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDMLYDKNAQHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 182 >gi|225419739|ref|ZP_03762042.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme DSM 15981] gi|225041629|gb|EEG51875.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme DSM 15981] Length = 455 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 22/214 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS TK+MTA V + L +T++++A +E + + K G +T++ L Sbjct: 231 PASTTKVMTALVAIKY-----GNLADEVTVTEDAVITEAGATLAGIKPGDKLTMEQLLYG 285 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AIA + + +KF MN ++ LG + THFMN HG+ HYTTA D+ Sbjct: 286 LMLPSGNDAGAAIAVHMAGSIEKFADMMNEEARRLGATGTHFMNPHGLNDPNHYTTAYDL 345 Query: 171 AIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGM----- 216 ++ +R T Y ++ + K + NW G DG+ Sbjct: 346 YLIFNEALKQPMFRKITGSTAYTANYRGADGKTVSKTWKGGNWFMTGERKTPDGLTVFGG 405 Query: 217 KTGFTCASGFNIV-ASAIQGDQSLIAVILGALDR 249 KTG T A+G+ +V AS D+ I+V++ A R Sbjct: 406 KTGTTKAAGYCLVMASRDDEDRGYISVVMKADSR 439 >gi|94994364|ref|YP_602462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] gi|94547872|gb|ABF37918.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] Length = 451 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 76 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 135 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 136 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 194 Query: 149 ATHFMNAHG----VVQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G V++ Y +A+D+A+++ + DFP+ + + + Sbjct: 195 SGKILNASGLPNEVLKDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVN 254 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ +I VIL A D + Sbjct: 255 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNA-DGS 313 Query: 251 TRNK 254 +N+ Sbjct: 314 DKNQ 317 >gi|170755502|ref|YP_001781401.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str. Okra] gi|169120714|gb|ACA44550.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1 str. Okra] Length = 378 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|168215602|ref|ZP_02641227.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens NCTC 8239] gi|182382030|gb|EDT79509.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens NCTC 8239] Length = 423 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 10/221 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD +TG +I D PAS TK+MT+ + F + + P T A + Sbjct: 42 YAVTLDYDTGEIIYAKGIDEKAYPASTTKVMTSLL---FAEHASKNDSFPYTADAKAQQP 98 Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 N++F G M ++ +K L++ SAND A IA+ + + +KF MN+ K LG Sbjct: 99 YTLNNSFGPIPVGEGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLG 158 Query: 147 LSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNT 203 L THF+ +G+ HY+TA D+A IL K + + + + GKK N Sbjct: 159 LKNTHFVTPNGLHNDDHYSTAYDLAVILQNAYKNPWVSETMALKDSDITVNGKKVLLENR 218 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N +G G G KTGFT +G +V+ + + +I +L Sbjct: 219 NKELG-IDGNIGGKTGFTTPAGRCLVSVYERNGRKIIGAVL 258 >gi|322374431|ref|ZP_08048945.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300] gi|321279931|gb|EFX56970.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300] Length = 413 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|309800179|ref|ZP_07694364.1| penicillin-binding protein 3 [Streptococcus infantis SK1302] gi|308116187|gb|EFO53678.1| penicillin-binding protein 3 [Streptococcus infantis SK1302] Length = 397 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ N+G ++ E P AS++KL+T Y+V+ L++ K L+TP+ I S+YP Sbjct: 35 VEANSGKILYEKDATQPVEIASISKLLTVYLVYEALEQGKISLSTPVEI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T S + T++ L+ +V SAN A+A+AE + +EK FV M + G Sbjct: 91 TTNSAASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMKAKLQEWG 150 Query: 147 LSATHFMNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ T +A D+A+++ + +PQ + + Sbjct: 151 IQDATLVNTTGLNNETLGTNIYPGSKKDDENKLSAYDVAVVARNLILKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A + Sbjct: 211 STFAGMTIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADN 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|257869614|ref|ZP_05649267.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2] gi|257803778|gb|EEV32600.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2] Length = 444 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D +TG ++ + + P AS+TK+++ Y+V +KE K PI IS+ AS+ Sbjct: 53 VDFDTGKILYDQEGETPMGIASVTKIISLYLVAEQVKEGKLTWEDPIEISQYASDLSVTP 112 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + T+ + + ++SAN VA+AE + +E FV M + G++ Sbjct: 113 DLSNVPLHRDVQYTVKDLYEASYIQSANAAVVALAEKIAGSEPAFVDQMKDKLTEWGITD 172 Query: 150 THFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQ-IKGLE 194 +NA G+ + G +T A+D+AI++ + DFP+ + + Sbjct: 173 AKIVNASGLNNTYLGENLYPGSTSTDENELSAKDVAIVARHLLQDFPEVLEVTSTVTKTF 232 Query: 195 IKGKKYP----NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G P N NW + F+ G DG+KTG T +G V +A++ Q +I V+L Sbjct: 233 GEGSYSPVEMVNWNWMLPGFINAKDGVDGLKTGTTDLAGACFVGTAVRDGQRIITVVL 290 >gi|310827089|ref|YP_003959446.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612] gi|308738823|gb|ADO36483.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612] Length = 314 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 42/276 (15%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAENYPD 48 FL+I +++ +F F +I+ P + L+ + G V+ + Sbjct: 24 FLIIAGLSLYMVVFAFKAISPGG--PAHPVNAMGSAGLYSESAVLMRLDGGEVLFQKNSG 81 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 PASLTKLMT V+ ++ +T P + S S + F G +TL + L Sbjct: 82 EKIYPASLTKLMTVLVILDQFEDLDHTVTLPGEVFDCLSGSGASVAGFLPGEQLTLRDLL 141 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 ++ S D + +A + +E+ F + MN + LG++ THF NA G+ GHYTT Sbjct: 142 YGCVLPSGADAVMGLACATAGSEENFAELMNGKAAELGMAHTHFKNATGLHDPGHYTTVM 201 Query: 169 DMAIL--SWRIKTDFPQYMHYFQIK-----------GL-----EIKGKKYPNTNWAVGTF 210 DMA+L + DF + + F + GL + G YP+ T Sbjct: 202 DMAVLLRAGLKNPDFRELLTTFDYQTEPTNRHPGGVGLSSTLNSLMGTPYPDGV----TL 257 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 LG KTG+T +G + A + + IAV GA Sbjct: 258 LGG---KTGYTEEAGLCLATLAEKDGREYIAVTAGA 290 >gi|306827400|ref|ZP_07460687.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] gi|304430547|gb|EFM33569.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] Length = 442 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V +K + L+ + +S A E Sbjct: 67 VVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKD 126 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F K T ++ + L +V S+N A+A+AE + +E FV M + G++ Sbjct: 127 RSLSNVPFDK-KTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGIT 185 Query: 149 ATHFMNAHG----VVQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G V++ Y +A+D+A+++ + DFP+ + + + Sbjct: 186 SGKILNASGLPNEVLKDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVN 245 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ +I VIL A D + Sbjct: 246 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNA-DGS 304 Query: 251 TRNK 254 +N+ Sbjct: 305 DKNQ 308 >gi|168704549|ref|ZP_02736826.1| D-alanyl-D-alanine carboxypeptidase [Gemmata obscuriglobus UQM 2246] Length = 304 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 23/259 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D TG V+ P AS TK+MTAY+V E +L +T S+ A + Sbjct: 50 WAVADGKTGKVLWGGNEKDPLPIASTTKIMTAYIVLKLAAEDAKVLDEVLTFSEAADKVV 109 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-------SLCKTEK---KFVQHMNN 140 S+S K G + + L L++ S ND A A AE S+ K + FV MN Sbjct: 110 GSSSDLKAGDKVAVRELLYGLLLPSGNDAAHAFAEHFGPRFKSVGKEQDPVASFVAQMNA 169 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI---------K 191 T+K L + T++++ HG+ + + + RD+ L++ D P + Y Q K Sbjct: 170 TAKALKMGETNYLDPHGLTR--NVASPRDLVTLAFHAMKD-PAFAKYVQTRRHKCTVTDK 226 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + NTN + G +G+KTG T A+G +V+ LI V LG+ + Sbjct: 227 DGNAREVTWNNTN-KLLDIEGYEGIKTGTTTAAGACLVSCGTLNGDRLIVVALGSTSSDN 285 Query: 252 RNKVSASLLSMGFYNKTDR 270 R S +L + + R Sbjct: 286 RYTDSRNLYRWAWAERAKR 304 >gi|153941233|ref|YP_001391113.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str. Langeland] gi|152937129|gb|ABS42627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F str. Langeland] gi|295319159|gb|ADF99536.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F str. 230613] Length = 378 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|293365274|ref|ZP_06611991.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC 35037] gi|291316724|gb|EFE57160.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC 35037] Length = 413 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|182625716|ref|ZP_02953485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens D str. JGS1721] gi|177909118|gb|EDT71593.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens D str. JGS1721] Length = 291 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 18/204 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++TA V ++ + L +TISK A+ S F+ G +T+ L L+ Sbjct: 82 ASTTKILTALVAINY-----SDLDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KS ND A+AIAE + + + F MN+ ++ LGL ++F + HG+ H+++A D+A+L Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYDLAVL 196 Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASG 225 S ++ F + +I G G + Y N N + A+G KTG+T +G Sbjct: 197 MSKAMEEPF-----FREISGTNEVGAEKYNFTRSYSNINKMLWRLPNANGGKTGYTGQAG 251 Query: 226 FNIVASAIQGDQSLIAVILGALDR 249 +V+S +++I V+L R Sbjct: 252 KCLVSSVDHNGRNIIIVVLNCPTR 275 >gi|313890351|ref|ZP_07823983.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] gi|313121337|gb|EFR44444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] Length = 390 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 45/253 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 ++D + G ++ ++ +PAS++K+ T Y++F L + K L T IT S Sbjct: 51 VVDASNGDILWQDNALTVRDPASMSKVFTLYLLFEDLAKGKITLDTKITASDTDQSISKI 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGL 147 Y SN+ G + + + ++ V S+N V +A L + F+ +NNT+K LG+ Sbjct: 111 YEISNNKIVAGVDYPIRDLITMIAVPSSNAATVMVANYLSQNNSSAFLDRINNTAKRLGM 170 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHY----- 187 THF NA G V +G+Y T+A D+AIL + +P + Y Sbjct: 171 LDTHFNNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPDIVTYTNKSI 230 Query: 188 ------------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 F + G KY G DG+KTG + ++ FN + +A +G Sbjct: 231 VKTMVGTPYEETFHSYNYSLPGDKY--------GLKGVDGLKTGSSPSAAFNAMVTAKRG 282 Query: 236 DQSLIAVILGALD 248 +I +++G D Sbjct: 283 KARVITIVMGVGD 295 >gi|306825360|ref|ZP_07458700.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432298|gb|EFM35274.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 411 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 123/256 (48%), Gaps = 33/256 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 270 Query: 249 RNT----RNKVSASLL 260 +++ R ++SLL Sbjct: 271 QDSNPYARFTATSSLL 286 >gi|170761736|ref|YP_001787179.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] gi|169408725|gb|ACA57136.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] Length = 378 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNEIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|322411635|gb|EFY02543.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 409 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 26/245 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+T Y+V +K + L+ + +S A E Sbjct: 36 VVEADSGRVLYEKDAKTPDAIASLTKLVTVYLVLDKVKSGQLQLSDQVNLSDYAFELTTD 95 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F + ++ + LK +V S+N A+A+AE + +E FV M G++ Sbjct: 96 SSLSNVPFDQ-KAYSVQDLLKATLVASSNSAAIALAEKVAGSEPNFVAQMRIQLSRWGIT 154 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +ARD+AI++ + DFP+ + + ++ Sbjct: 155 SGKILNASGLPNEVLKDHRYPGSALEEENILSARDIAIVTMHLLEDFPEILEITKQTEVD 214 Query: 195 IKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 G + N A G G DG+KTG T +G +V ++I+ LI VIL A D Sbjct: 215 FAGNSIHSFNQLLLGMAKGRA-GVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DG 272 Query: 250 NTRNK 254 + +N+ Sbjct: 273 SDKNQ 277 >gi|323127166|gb|ADX24463.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 415 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V + + L+ + +S A E Sbjct: 40 VVEVDSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTD 99 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F + T ++ + L+ +V S+N A+A+AE + +E FV M G++ Sbjct: 100 SSLSNVPFDQ-KTYSVQDLLEATLVASSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGIT 158 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 159 SGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 218 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ LI VIL A D + Sbjct: 219 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DGS 277 Query: 251 TRNK 254 +N+ Sbjct: 278 DKNQ 281 >gi|225018712|ref|ZP_03707904.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum DSM 5476] gi|224948440|gb|EEG29649.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum DSM 5476] Length = 390 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 12/220 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + AS TK+MT+ + + L T+ +NA + S Sbjct: 37 LIEANSGKILYQKNAQQKLPMASTTKIMTSLIAL-----ESGNLDEWFTVDENAIKVEGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +T+ ++++S ND A A+A L + + F + MN ++ +G++ +HF Sbjct: 92 SMGLQAGDQVTMRTLAYGMLLQSGNDAANAVAVKLAGSAEAFAEKMNERAQQIGMANSHF 151 Query: 153 MNAHGVVQHGHYTTARDMAILSW-RIKTD-FPQYMHYFQIKGLEIKGKKY----PNTNWA 206 + G+ HY+TA DMA L+ ++ D F + +Q K LE Y N N Sbjct: 152 VTPSGLDNEEHYSTAEDMAKLARTALQNDGFREICSTYQTK-LEYGNPPYTRWMTNHNRL 210 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + G G+KTGFT SG +V++A + LIAV L A Sbjct: 211 LKEYEGTIGVKTGFTKKSGRCLVSAAERDGVRLIAVTLNA 250 >gi|307703815|ref|ZP_07640756.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus oralis ATCC 35037] gi|307622650|gb|EFO01646.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus oralis ATCC 35037] Length = 405 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 27 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYKL 82 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 83 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 142 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 143 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 202 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 203 STFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 262 Query: 249 RNT 251 ++T Sbjct: 263 QDT 265 >gi|28210687|ref|NP_781631.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28203125|gb|AAO35568.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 419 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 17/224 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD +TG +I PD PAS TKL+T+ + L E K +T +K+A + P + Sbjct: 41 LDMDTGEIIYAKSPDDKMYPASTTKLITSLL----LAENKNK-DDDLTYTKDAKDQPEYS 95 Query: 94 -----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 G TM +A+ L++ S ND+A I +++ + F + MN +K+L L Sbjct: 96 LNKNLHAISVGETMKASDAMDGLLLYSGNDVAYLIGDNIGGNREGFAKLMNEKAKSLNLK 155 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGKKY--PNT 203 ++F+N +G+ HYTT+ D++IL R P K + KG + N Sbjct: 156 NSNFVNPNGLHHKDHYTTSYDLSILG-RAAYKNPWVSETMAKKNSSVSTSKGTTFLIENR 214 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N VG+ G G KTG+T A+G +VA + + ++ V+L ++ Sbjct: 215 NKLVGS-KGCVGGKTGYTSAAGRCLVAIFDRDGRKILGVVLNSV 257 >gi|55822070|ref|YP_140511.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein [Streptococcus thermophilus CNRZ1066] gi|55738055|gb|AAV61696.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein [Streptococcus thermophilus CNRZ1066] Length = 422 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 38/292 (13%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++IA+ ++ P L+ +T+ + ++T TG V+ E P AS+TK Sbjct: 12 QHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + IS +YP + + + S + LD+ L Sbjct: 72 ILTAYMVYKAVDQGKITWDTEVGIS----DYPFNLTVNSEVSNVPLDSRKYTVKQLLDAT 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 128 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + ++ +G K N+ + G Sbjct: 188 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREG 247 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLL 260 DG+KTG T +G + VA + + SLI V++ G D + R + LL Sbjct: 248 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELL 299 >gi|163938022|ref|YP_001642906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163860219|gb|ABY41278.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 435 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 43 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQD 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G T+ + + + SAN +A+AE++ E FV+ MN+ +K LGL Sbjct: 103 ASLSNVALENGGLYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLK 162 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI--KG 192 F+N+ G+ H TT A+D+A L+ + D+P+ + +I K Sbjct: 163 NYKFVNSTGLTNKDLKGMHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKV 222 Query: 193 LEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K+ +NW V + G DG+KTG T +G + + I+V++ Sbjct: 223 FRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 282 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 283 SSHTARFDETKKLYDYGFAN 302 >gi|168184525|ref|ZP_02619189.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|237795257|ref|YP_002862809.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4 str. 657] gi|182672383|gb|EDT84344.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|229261495|gb|ACQ52528.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium botulinum Ba4 str. 657] Length = 378 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|329116007|ref|ZP_08244724.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] gi|326906412|gb|EGE53326.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] Length = 391 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 29/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 +++ G +I ++ D +PAS++KL T Y++F +K K L+ I S+ + Sbjct: 51 VVNAKNGDIIWQDNIDASRDPASMSKLFTLYLLFEDIKAGKLSLSDHIRASQTDQDISQI 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL 147 Y SN+ G + + + + V S+N + +A + + F+ +N T++ LG+ Sbjct: 111 YAISNNKIVAGVDYPIRDLITMTAVPSSNAATLMLANYMSDNDAGAFINRINVTAQKLGM 170 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKG 192 T F NA G V GHY T+ARD+AIL + ++P+ + + Sbjct: 171 KNTFFTNASGAVASAFEGHYSPEGYDSNQPNKTSARDLAILCYHFLKNYPEILEFTCKSS 230 Query: 193 LEIKGK-----KYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ + ++ + N+++ G DG+KTG + ++ FN V +A + D LI+++ Sbjct: 231 VKTMDRTPYEEEFHSYNYSLPGDKFGIKGVDGLKTGSSPSAAFNAVITAKRDDTRLISIV 290 Query: 244 LGALD 248 +G D Sbjct: 291 MGVGD 295 >gi|291458267|ref|ZP_06597657.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] gi|291418800|gb|EFE92519.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] Length = 528 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 121/238 (50%), Gaps = 37/238 (15%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYP 90 L+D+++ V+ A+N +H + PAS+TK++TA VV +K L +T S +A S Sbjct: 52 LIDSDSNAVLYAKNEHEH-YFPASITKVLTAVVVLEHVKN----LDEKLTFSSSATSGNL 106 Query: 91 PSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +NST G +++ + L L++ SAND A A+AE + + + F + MN + LG Sbjct: 107 EANSTVIGAVPGDKLSVRDCLYSLLLHSANDCANALAEHVAGSNEAFAELMNQKAAELGC 166 Query: 148 SATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQ------YMHYFQIKGLEIKGKK 199 + +HFMN G+ HYT+ DMA IL + IK F Q Y H K +I K+ Sbjct: 167 TDSHFMNPSGLDNPEHYTSCADMAKILQYAIKNPTFRQIDSTQVYTHAPISKYPDIGAKE 226 Query: 200 YPNTNWAV-------------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 NT +A G F G KTG+T +G +V + + + +LI VIL Sbjct: 227 --NTIYAHHHMMRRAYRDFYNGVFAG----KTGYTMTAGNTLVTACKRNNMTLICVIL 278 >gi|226949097|ref|YP_002804188.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] gi|226843082|gb|ACO85748.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] Length = 378 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|291544780|emb|CBL17889.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13] Length = 337 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 25/229 (10%) Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNST 95 V+AE PAS+TKLMT + E + TP K+ + S Sbjct: 92 RVLAEKNGQERMYPASMTKLMTLLLAC----ESGIAMDTPYVFDKDMLDPLIAQGASRVG 147 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 F+ T+T + L I+ S D A+AE + E F +HMN +++LG+ THF+NA Sbjct: 148 FEPEETVTFADLLYGSILSSGGDATAALAEVVDGDEASFAKHMNRRAQDLGMFDTHFVNA 207 Query: 156 HGVVQHGHYTTARDMA--------------ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 G+ HY+TARD+A ILS + T +H G+EI+ Sbjct: 208 SGLHDDEHYSTARDIALLLEKTLENATCREILSTSVYTTSRNSVH---PNGMEIRSVVEL 264 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + G KTGFT +G+ + + A QG + I V+ G ++N Sbjct: 265 RMQDYQPEQVKFQGGKTGFTDQAGYCLASFAEQGSDTYIVVVAGGEEKN 313 >gi|116627039|ref|YP_819658.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein [Streptococcus thermophilus LMD-9] gi|116100316|gb|ABJ65462.1| D,D-carboxypeptidase PBP3. Serine peptidase. MEROPS family S11 [Streptococcus thermophilus LMD-9] gi|312277502|gb|ADQ62159.1| D,D-carboxypeptidase PBP3 [Streptococcus thermophilus ND03] Length = 417 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 38/292 (13%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++IA+ ++ P L+ +T+ + ++T TG V+ E P AS+TK Sbjct: 7 QHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + IS +YP + + + S + LD+ L Sbjct: 67 ILTAYMVYKAVDQGKITWDTEVGIS----DYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 123 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 182 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + ++ +G K N+ + G Sbjct: 183 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLL 260 DG+KTG T +G + VA + + SLI V++ G D + R + LL Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELL 294 >gi|225570111|ref|ZP_03779136.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM 15053] gi|225161581|gb|EEG74200.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM 15053] Length = 454 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 133/280 (47%), Gaps = 51/280 (18%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-P 90 +++ TG ++ A+N +H + PAS+TK++TA V + LT +T + ++ + Sbjct: 76 VMEVGTGAILYAKNIDEHEF-PASITKVLTALVAL-----ENGQLTDEVTFTHDSVAFLQ 129 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK----FVQHMNNTSKN 144 P +S+ K+G ++LD AL ++ SAN+ A A+ ES+ + F++ MN K Sbjct: 130 PGDSSIGMKEGDVISLDEALHATLLASANEAAYAVGESVGRNAGHDYNWFLEQMNARCKE 189 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------------------H 186 LG +HF N +G+ HYT ARDMA++ R P++ H Sbjct: 190 LGGENSHFANTNGLHDENHYTCARDMALIG-RELFKHPEFFDIVQTLNYAIPATDTCEEH 248 Query: 187 YFQIK-GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 FQ K + I G N+N+ + A G KTG+T + ++ A + L+ V+L Sbjct: 249 IFQQKHKMLIPG----NSNY----YEYAVGGKTGYTSDALSTLITMAEKDGVRLVCVVLR 300 Query: 246 ALDRNTRNKVSASLLSMGFYN--------KTDRKKINYII 277 N + + +LL GF N + D K ++ II Sbjct: 301 THGSNIYSD-TKNLLDYGFSNFKKTAASGEEDSKDVDSII 339 >gi|89894346|ref|YP_517833.1| hypothetical protein DSY1600 [Desulfitobacterium hafniense Y51] gi|89333794|dbj|BAE83389.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 364 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 22/224 (9%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALK 109 PAS TK+MT + + +T S+ +Y T + G ++L++ L Sbjct: 3 PASTTKIMTGLLGIELGNPEDI-----VTASETMLDYTTVYGTRIYLEPGEQLSLEDMLY 57 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAND AVAIAE + FV MN + +LGL T F N G+ + GH TTA D Sbjct: 58 ALLLNSANDAAVAIAEHISGNTSAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLTTAHD 117 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YP----NTN---WAVGTFLGADGMKTGF 220 +A ++ + P + Y + K I K P N N W T GMKTG+ Sbjct: 118 LARIAQAAYAN-PVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTIT---GMKTGY 173 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 T + +VASA + + +I VIL + R + A LL GF Sbjct: 174 TSVAQNCLVASASRDGRDVIGVILKSPGREIYTDMQA-LLDYGF 216 >gi|3043860|gb|AAC14599.1| extracellular protein Exp2 precursor [Lactococcus lactis subsp. cremoris MG1363] Length = 284 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 32/218 (14%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K TT + IS A E Sbjct: 43 IDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQN 102 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN A+A+AE + +E KFV M K+ G++ Sbjct: 103 SNASNIPLAQNGQYTVKDLLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKDWGIT 162 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 163 DSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQI--TKKTE 220 Query: 195 I-------KGKKYPNTNWAVGTF----LGADGMKTGFT 221 I + NTN + F G DG+KTG T Sbjct: 221 IPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGST 258 >gi|322392110|ref|ZP_08065572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris ATCC 700780] gi|321145010|gb|EFX40409.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris ATCC 700780] Length = 413 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E P AS++KL+T Y+V+ L + K L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDATQPVEIASISKLLTVYLVYEALDQGKITLSTPVEI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMKAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N+ G+ + G + +A D+A+++ + +PQ + + Sbjct: 151 IQDATLVNSTGLNNETLGNNIYPGSKKDDENKLSAYDVAVVARNLILKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A + Sbjct: 211 STFAGMTIHSTNYMLEGLPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADN 270 Query: 249 RNT 251 +NT Sbjct: 271 QNT 273 >gi|293375502|ref|ZP_06621781.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] gi|325844936|ref|ZP_08168301.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] gi|292645902|gb|EFF63933.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] gi|325488986|gb|EGC91375.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] Length = 368 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 30/255 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E PD AS+TK++T+ V + L + +S NA+ S Sbjct: 37 LMEQTTGRVLFEKCPDEQMYIASITKILTSIVAI-----ENGQLDEWVEVSDNATRQVGS 91 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G M L + + L+++S ND A+ IAE++ E FV+ MN +K +G+ + F Sbjct: 92 SLYLALGDQMKLIDVIYGLMLRSGNDGAMVIAEAVGGDEAGFVKMMNEKAKEIGMKNSIF 151 Query: 153 MNAHGVVQHGH-YTTARDMAILSWRIKTDFPQYMH----YFQIKGLEIKGKKYPNTN--- 204 N G+ + + +TARDMAIL QY + ++ G E N Sbjct: 152 QNPSGLDETTYNLSTARDMAILM--------QYAMNNPIFREVTGTETHKATSKNGTPYV 203 Query: 205 W------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 W G + A G KTGFT + +V SA + D L+ V L A D + S Sbjct: 204 WHNKHKLVTGYYEYAIGGKTGFTERARRTLVTSARKDDLELVVVTLKAGDDWNDH---MS 260 Query: 259 LLSMGFYNKTDRKKI 273 L + GF N +K I Sbjct: 261 LFNYGFDNYELKKVI 275 >gi|289422780|ref|ZP_06424618.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus anaerobius 653-L] gi|289156810|gb|EFD05437.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus anaerobius 653-L] Length = 313 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 124/269 (46%), Gaps = 43/269 (15%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS---FLKEKKAMLTTPITIS 83 K Y L+D +G +I + D PAS TK+ TAY V L EK + T P Sbjct: 39 KSKYMVLMDYESGKIIYKKNADQKIYPASTTKIWTAYCVLQKCQDLNEKIKIGTMP---- 94 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTS 142 E S+ ++G T L+ L++ S+ND+A +A E+KF+ MN+ + Sbjct: 95 ----EIEGSSMYLEEGEVFTTRQLLESLLIHSSNDVAYVLARHYGGGDERKFIDFMNSEA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARD---MAILSWR---IKTDFPQYMHYFQIKGLEIK 196 K G + THF N HG+ HYTTA + MA +++ IK+ + F+ K EIK Sbjct: 151 KKFGFNHTHFNNPHGLPDTDHYTTAEEMTNMARIAYGNDIIKSIVAKKSVTFK-KSNEIK 209 Query: 197 -------GKKYPNTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 K+ N+N + + DG+KTG+T +G +VA+ + +I+ Sbjct: 210 LDRELYNSNKFLNSNMQMNYNGKDIPMKYDVVDGIKTGYTDDAGNCLVATGTKNKIRMIS 269 Query: 242 VIL----GALDRNTRNKVSASLLSMGFYN 266 + G+L ++R LL GF N Sbjct: 270 GVFFAPSGSLYHDSR-----FLLDYGFEN 293 >gi|229029247|ref|ZP_04185338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228732060|gb|EEL82951.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 366 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 13/244 (5%) Query: 10 MAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + M +++ P + A+ N L++ +G V+ AS+TK+MTA Sbjct: 3 LIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTA---- 58 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L + + +++S A S K G + L++ + L+++S ND A IAE+ Sbjct: 59 -LLAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAEN 117 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYM 185 + + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 118 VGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFK 176 Query: 186 HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 F K + YP N + A G KTGFT +G +V +A + LI V Sbjct: 177 KIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVV 236 Query: 243 ILGA 246 L A Sbjct: 237 TLSA 240 >gi|227892889|ref|ZP_04010694.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM 16047] gi|227865295|gb|EEJ72716.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM 16047] Length = 432 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNAS 87 +D+N+G ++ D AS+TKL+T Y+ +K KK T PI N + Sbjct: 54 IDSNSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNT 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 114 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRQQVKKWGI 171 Query: 148 SATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ + +A+DMAI+ + DFP+ ++ ++ L Sbjct: 172 EDAKIYTACGLPNGNLGKDAYPGINKNAENTMSAKDMAIIGQNLIKDFPEVLNTTKLAHL 231 Query: 194 EIK--GK--KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K GK K N NW + DG+KTG T A+G + + LI V+ Sbjct: 232 DFKDNGKTTKMANFNWMLKGLSQYDKAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVV 291 Query: 244 LGALDRN 250 +GA R+ Sbjct: 292 MGARHRD 298 >gi|326407895|gb|ADZ64966.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp. lactis CV56] Length = 435 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 128/285 (44%), Gaps = 38/285 (13%) Query: 34 LDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +D ++G ++ A+N D AS+TKL+TAY+V+ + E K T + IS A E Sbjct: 44 IDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQN 103 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + T+ + L L++ SAN AVA+AE + +E KFV M K+ G++ Sbjct: 104 SNASNIPLVQNGQYTVKDLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGIT 163 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +H +NA G+ +GH +A+ +A LS+ + DFP+ + K E Sbjct: 164 DSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEILQI--TKKTE 221 Query: 195 IK---GKK----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I G + NTN + F G DG+KTG T + Q +I V+ Sbjct: 222 IPFDTGNEAKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVV 281 Query: 244 LGALDRNTRNKVSASLLSM------GFYNKTDRKKINYIIKDFYQ 282 L A D N +L + G + T + N + DF + Sbjct: 282 LEATDPAADNSTPFTLTNQLMNYVYGHWRTTSLVQKNKSLDDFKE 326 >gi|315613037|ref|ZP_07887948.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis ATCC 49296] gi|315315147|gb|EFU63188.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis ATCC 49296] Length = 413 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E + P AS+TKL+T Y+V+ L + L+TP+ I S+YP Sbjct: 35 VEATTGKILYEKDANQPVEIASITKLVTVYLVYEALDQGTISLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIRDYPQVLEITKKPT 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNADQ 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|55820182|ref|YP_138624.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein [Streptococcus thermophilus LMG 18311] gi|55736167|gb|AAV59809.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein [Streptococcus thermophilus LMG 18311] Length = 422 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 38/292 (13%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++IA+ ++ P L+ +T+ + ++T TG V+ E P AS+TK Sbjct: 12 QHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + IS +YP + + + S + LD+ L Sbjct: 72 ILTAYMVYKAVDQGKITWDTEVGIS----DYPFNLTVNSEVSNVPLDSRKYTVKQLLDAT 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 128 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-NWAV----GTFLG 212 +A D+AI++ + D+PQ + + ++ +G T N+ + G Sbjct: 188 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNELTTHNYMLEGQENYREG 247 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLL 260 DG+KTG T +G + VA + + SLI V++ G D + R + LL Sbjct: 248 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELL 299 >gi|225572130|ref|ZP_03780994.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM 10507] gi|225040396|gb|EEG50642.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM 10507] Length = 370 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D ++G V+ PAS+TKLMTA + F + L + +TI + + Sbjct: 126 LFDLSSGEVLYSKDLYEKVYPASITKLMTAMLAF-----QSGKLDSTVTIQQEDLDLESG 180 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + F G +TLD ++ L+V S ND A AIA + +++KFV MN+ + LG++ T Sbjct: 181 SQVCGFMVGDQVTLDQLVRCLLVYSGNDAASAIARYVGGSQEKFVAMMNDYAAKLGMTGT 240 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 HF N HG+ HYTT D+ ++ ++ +Y+ Q+ Sbjct: 241 HFENPHGLHTENHYTTVYDIYLM-LNEAMNYSEYLEIAQL 279 >gi|313891603|ref|ZP_07825210.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus UPII 345-E] gi|313119881|gb|EFR43066.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus UPII 345-E] Length = 323 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 17/219 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D NTG + + PAS TK++T + L+E L I+ NA++ + Sbjct: 63 IADGNTGKFLGGKDSELRVYPASTTKILTCIIA---LEEGHDKLNDNALITPNATKQDGT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K ++L L +++ S ND AV++AE++ + F++ MN +KN+G ++F Sbjct: 120 CLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVSGNYETFIKLMNAKAKNIGAVNSNF 179 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +NA+G+ HYTTA DMA ++ +R P +M ++ + ++ N N Sbjct: 180 VNANGLTDKNHYTTASDMAKIAVYAMKNQNFRKIVKEPFHMMTYRDGTI----RRIENRN 235 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + GA+G+KTG T A+G +VASA + D L+ V Sbjct: 236 EFLESGYEGANGIKTGMTEAAGDCLVASA-ERDGHLVVV 273 >gi|229165003|ref|ZP_04292801.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228618455|gb|EEK75482.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] Length = 443 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 26/260 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 51 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQD 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G T+ + + + SAN +A+AE++ E FV+ MN+ +K LGL Sbjct: 111 ASLSNVALENGGLYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLK 170 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQI--KG 192 F+N+ G+ H TT A+D+A L+ + D+P+ + +I K Sbjct: 171 NYKFVNSTGLTNKDLKGMHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKV 230 Query: 193 LEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K+ +NW V + G DG+KTG T +G + + I+V++ Sbjct: 231 FRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 290 Query: 247 LDRNTRNKVSASLLSMGFYN 266 R + L GF N Sbjct: 291 SSHTARFDETKKLYDYGFAN 310 >gi|302335720|ref|YP_003800927.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli DSM 7084] gi|301319560|gb|ADK68047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli DSM 7084] Length = 383 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 16/258 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ L + P AET + + ++D + G+V+A P+ AS+TK+ Sbjct: 9 LLAVVLTTFLVAVSPCAYAAETTPQVTEAQSFEIIDQD-GNVLASKDPNRRMAMASITKI 67 Query: 60 MTAYVVFSFLKEKKAMLT-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 MTA V K + + T +T+ + A + + T + ++ ++V S ND Sbjct: 68 MTAMVALDSGKSMGDVCSITDVTLPEGAQL-----AGYTSADAPTFGDLMRTMLVYSGND 122 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A+ +A ++ TE+ FV+ MN ++ +G+ THF N HG+ + HY+ A D+A++ Sbjct: 123 AALNVAYAVAGTEEAFVELMNKKAREIGMEDTHFSNPHGLEEDDHYSCAHDLALMGKYAL 182 Query: 179 TDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 ++P + L + + K + +T+ + ++ G G+KTG +G + S+ + Sbjct: 183 ENYPFIARTVMTRRLTVTVGGQQKTFESTDELMDSYGGLCGIKTG-KVEAGTTFLGSSKR 241 Query: 235 GDQSLIAVILGALDRNTR 252 L + +LG + R Sbjct: 242 HGLQLFSCVLGCTTDDGR 259 >gi|218678836|ref|ZP_03526733.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 168 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 71/126 (56%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ + D PASLTK+MT Y+ F L E + +T+S+NA P Sbjct: 33 VIDAQSGQILEASNQDELNYPASLTKMMTLYLAFEALHEGRLKWDQKLTMSENAESKEPF 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL A++ ++V SAND AVAIAE L +E+ F + M + ++ LG++ T F Sbjct: 93 KLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKTMTDKARQLGMTNTVF 152 Query: 153 MNAHGV 158 N G+ Sbjct: 153 KNPSGL 158 >gi|229160519|ref|ZP_04288514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228622929|gb|EEK79760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 362 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 13/242 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ AS+TK+MTA Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTA-----L 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 56 LAAESGKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GA 246 A Sbjct: 235 SA 236 >gi|226311997|ref|YP_002771891.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] gi|226094945|dbj|BAH43387.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] Length = 389 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 14/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G ++ ASLTK MTA V K L +T+ A S Sbjct: 43 LIDVESGRILYSKNGTKKMRIASLTKTMTAIVAIEMGK-----LDAQVTVPPQAVGVEGS 97 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G +TL+ L L+++S ND AV IA + + F MN + +G+ T+F Sbjct: 98 SIYLKNGEKLTLEELLYGLMLRSGNDAAVTIAMHIGGSVPGFTYLMNEKAAMIGMEYTNF 157 Query: 153 MNAHGVVQ-HGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWA 206 N HG+ + HY+T DMA LS + + + + ++K + +G+++ N N Sbjct: 158 TNPHGLDDSNQHYSTPEDMAKLSAYALHNPVFRQIVSTKVKDISWEGEQWDRRLLNKNKM 217 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T + + +SA + + L + L A D SA L+ GF N Sbjct: 218 LHLYNGADGVKTGYTKLAKRCLASSATRNGRQLATITLNASDDWND---SAKLMDWGFAN 274 >gi|182419858|ref|ZP_02951098.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237666495|ref|ZP_04526480.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376406|gb|EDT73988.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237657694|gb|EEP55249.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 413 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 124/281 (44%), Gaps = 20/281 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY----YTLLDTNTGHVIAENYPDHPWNPASL 56 M+++ ++M +L P AET K L+D ++G ++ D + PAS Sbjct: 1 MKRYFKFLSMLLLFLCIPLTVHAETAKPEINAQGCALIDASSGTILYGKNEDCTFEPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA V K LT +TI +N + + KG +T+ + L L+++S Sbjct: 61 TKVMTALVALD-----KCKLTDEVTIQENFTSVDGTAIGLLKGDVVTVHDLLLGLLMESG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-LSW 175 ND A +A + + F Q MN +K LG +AT F N G+ H TT D+A+ L Sbjct: 116 NDCANELAYHVSGSIDSFAQLMNEKAKELGATATSFRNPSGLPDPEHLTTPHDLALFLRE 175 Query: 176 RIKT----DFPQ--YMHYFQIKGLE----IKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 IK D Q Y I E I K Y + + A K G+T + Sbjct: 176 AIKNQDFLDIAQTPYATITMINNPERTIIINNKNYMINKNSKYYYKYALCGKNGYTTKAN 235 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 V+SA + LIA L A+D+N S+ + GF N Sbjct: 236 HTYVSSAEKDGHILIASFLNAMDKNQNFFDMQSVFNYGFDN 276 >gi|315222027|ref|ZP_07863938.1| beta-lactamase [Streptococcus anginosus F0211] gi|315188993|gb|EFU22697.1| beta-lactamase [Streptococcus anginosus F0211] Length = 413 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 25/268 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ + +L + P + +A+ ++ + +D TG ++ E + P AS+TK Sbjct: 1 MKKFIITLVTTLLIFLAPTV-LADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITK 59 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKS 115 L+TAY+V+ + + K L T + IS + P +++ + T++ L+ ++ S Sbjct: 60 LLTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNPDASNVPLEARKYTVEELLETSLIAS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----VVQHGHY------- 164 AN A+A+AE + +EKKFV M + G+ +NA G V+ H Sbjct: 120 ANSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKDATIVNASGLNNSVLGEEHIYPGSGKE 179 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +A D+AI++ R+ D+P+ + Q G ++N + G DG Sbjct: 180 DENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLKNMPAFRAGVDGF 239 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVIL 244 KTG + G + V + Q LI V+L Sbjct: 240 KTGTSDKGGSSFVGTIQQRGMRLITVLL 267 >gi|38142301|dbj|BAD00953.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142327|dbj|BAD00966.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++TNTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVETNTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|319655038|ref|ZP_08009108.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2] gi|317393262|gb|EFV74030.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2] Length = 451 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 136/313 (43%), Gaps = 45/313 (14%) Query: 8 IAMAMLSNIFPFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +A+ M+ + P + A + L+D TG ++ + D AS+TK+MT Sbjct: 14 LALVMILGLLPGIHKAHAEDILNINADAAILVDAETGKILYQKNADKVLGIASMTKMMTE 73 Query: 63 YVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 Y++ ++E K +S K + + SN ++ + + + + SAN Sbjct: 74 YLLLEAVEEGKVKWDQEYAVSEYVWKVSQDRNLSNVPLRRDGKYNIRELYEAMAIYSANG 133 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYT 165 +AIAE++ +E FV+ MN + LGL F+N+ G+ + + Sbjct: 134 ATIAIAETIAGSETNFVKMMNEKAAELGLKDYKFVNSSGLNNRDLKGSPPAGGPEEENVM 193 Query: 166 TARDMAILSWRIKTDFPQYMH--------YFQIKGLEIKGKKYPNTNWA----VGTFLGA 213 +A+D A+L+ + FP+ + + + EI K N NW V + GA Sbjct: 194 SAKDTAMLAKELINRFPEVLETASTPRKTFREGTDDEI---KMENWNWMLPELVYGYEGA 250 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNK 267 DG+KTG T +G+ +A++ I+V++ A N +R + + GF N Sbjct: 251 DGLKTGTTDFAGYCFTGTAMRDGNRYISVVMNAKGANGQATYKSRFDETKKMFDFGFSNF 310 Query: 268 TDRKKI--NYIIK 278 T + + NY +K Sbjct: 311 TKEEIVPANYQVK 323 >gi|295110604|emb|CBL24557.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 439 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 26/249 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ + D PAS TKLMT V K + T + + S Sbjct: 59 LMDADTGAILYDKGMDEYRYPASTTKLMTLLVAIENSSPKDVVTFTETGVRD--VTWDSS 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 N + G TMT+ + +KSAN++ IAE + TE FV+ MN +K LG + THF Sbjct: 117 NINAQLGETMTMKDCWFAAYIKSANEVCAQIAEYVGGTEANFVEMMNQKAKKLGCTHTHF 176 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 +NA G+ HY+ A D+A I+ +K F+ K LE P TN + L Sbjct: 177 VNASGLPDENHYSCAEDLAKIMRAGLKN------ARFR-KVLETVSYTIPATNLSAARSL 229 Query: 212 ----------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 G G KTGF+ + + +A + ++ IAV + D Sbjct: 230 HTHVPLLAKESSLYYEGCIGGKTGFSTEAQNCLAVAAERNGRTYIAVTMRDTDLGINCAD 289 Query: 256 SASLLSMGF 264 S +L F Sbjct: 290 STALFDYAF 298 >gi|229132169|ref|ZP_04261027.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228651316|gb|EEL07293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 407 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 182 >gi|331089269|ref|ZP_08338171.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405821|gb|EGG85350.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium 3_1_46FAA] Length = 514 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 31/234 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ N+G ++ + PAS+TKL+TA V + + ++S EY + Sbjct: 71 VMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSEDSVS--FLEYGDA 128 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE----KKFVQHMNNTSKNLGLS 148 + + G +++++AL +++ SAN+++ AIAES+ K + F+Q MN + LG + Sbjct: 129 SIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERCEELGCT 188 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---- 204 +H+ NA+G+ HYTTA DMA++ + F ++ Q I P TN Sbjct: 189 GSHWTNANGLHDENHYTTAHDMALIGSAV-YQFDKFREVTQTLNYTI-----PPTNLVNE 242 Query: 205 -----------WAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 W VG D G KTG+T + +V A D L+AV+L Sbjct: 243 SRTFQQNHKMLW-VGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 295 >gi|332522713|ref|ZP_08398965.1| putative phage DNA packaging protein [Streptococcus porcinus str. Jelinkova 176] gi|332313977|gb|EGJ26962.1| putative phage DNA packaging protein [Streptococcus porcinus str. Jelinkova 176] Length = 396 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 29/245 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASE- 88 ++D + G ++ ++ +PAS++K+ T Y++F L + K L T IT S + SE Sbjct: 51 VVDASNGDILWQDNALTVRDPASMSKVFTLYLLFEDLAKGKLTLDTKITASDTDQAISEI 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGL 147 Y SN+ G + + + ++ V S+N V +A L + + ++ +N+T+K LG+ Sbjct: 111 YEISNNKIVAGVEYPIRDLITMIAVPSSNAATVMVANYLSQNDASAYLDRINSTAKRLGM 170 Query: 148 SATHFMNAHGVVQ---HGHY------------TTARDMAILSWRIKTDFPQYMHYFQIKG 192 THF NA G V +G+Y T+A D+AIL + +P ++Y Sbjct: 171 LDTHFSNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPDILNYTNTST 230 Query: 193 LE-IKGKKYPNTNWAVGTFL--------GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ + G Y T + L G DG+KTG + ++ FN + +A +G +I ++ Sbjct: 231 VKTMIGTPYEETFHSYNYSLPGDKYGIKGVDGLKTGSSPSAAFNAMVTAKRGKARVITIV 290 Query: 244 LGALD 248 +G D Sbjct: 291 MGVGD 295 >gi|223985877|ref|ZP_03635915.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM 12042] gi|223962143|gb|EEF66617.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM 12042] Length = 335 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++ N G+V+ + AS++K+MTA V E + I I + Sbjct: 24 YIVISGNDGNVLEAENEHEVRSIASISKIMTAVVAL----ENGDYIDQWI-IGDEVTNVT 78 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149 S +KG +++ + L +++KS ND AVAIA + + +KF+Q MN + LG+ Sbjct: 79 GSMIWIQKGQQVSMRSLLYGMMLKSGNDAAVAIAHRVGGGSVEKFIQMMNEKAVALGMKD 138 Query: 150 THFMNAHG--VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWA 206 T F N +G V + G+Y+TA DMA+L + PQ+ + + G ++ N+N Sbjct: 139 TEFHNPNGMDVEEEGNYSTAYDMAVLM-QYAMTLPQFREIVATQYYTSEWGSRWKNSNKL 197 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + F G KTGFT +G +V +A G+ I V L DR T Sbjct: 198 LSNFEFCTGGKTGFTNKAGETLVTAAQNGELEYIVVTLAVPDRWT 242 >gi|229010663|ref|ZP_04167863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|228750628|gb|EEM00454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 407 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 30 FATTIDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 89 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 90 ---QIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKD 146 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 147 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 182 >gi|19746044|ref|NP_607180.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS8232] gi|19748212|gb|AAL97679.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS8232] Length = 411 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V + + L+ + +S A E Sbjct: 36 VVEVDSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTD 95 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F + T ++ + L+ +V S+N A+A+AE + +E FV M G++ Sbjct: 96 SSLSNVPFDQ-KTYSVQDLLEATLVASSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGIT 154 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + +NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 155 SGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 214 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ +I VIL A D + Sbjct: 215 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNA-DGS 273 Query: 251 TRNK 254 +N+ Sbjct: 274 DKNQ 277 >gi|163939181|ref|YP_001644065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163861378|gb|ABY42437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 428 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + T +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 51 FATTIDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG Sbjct: 111 ---QIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKD 167 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +HF+ +G+ HYTT DMA+++ ++ +P+ + Sbjct: 168 SHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQ 203 >gi|225181453|ref|ZP_03734896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225167851|gb|EEG76659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 406 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 28/249 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+++ TG V+ E PAS+TK++T ++ E + + + + A + S Sbjct: 35 LINSRTGEVLWEKNSHQQMFPASITKILTTILLLENAAEDEVAVASEL-----AEKTRGS 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G +T+++ L L+++SAND +V AE + + F Q MN ++ G + F Sbjct: 90 SLYLRRGQELTVEDLLYALMLRSANDGSVVAAELVSGSVDSFAQLMNQKARQAGAINSTF 149 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG---- 208 N HG+ H TTA DMA++ T + F+ ++ + W G Sbjct: 150 TNPHGLPDENHLTTAYDMAMI-----TRYAMQNQRFR----DLAATQRHTIVWPEGEDSY 200 Query: 209 ---------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 T+ G G+KTG+T +G V +A + LI V+L A N + +L Sbjct: 201 LINRIPLLSTYEGMLGIKTGYTTPAGRTFVGAAQRDGLELITVVLQA-SGNELWDDTVAL 259 Query: 260 LSMGFYNKT 268 L GF N T Sbjct: 260 LDYGFDNFT 268 >gi|153815363|ref|ZP_01968031.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756] gi|145847222|gb|EDK24140.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756] Length = 519 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 31/234 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ N+G ++ + PAS+TKL+TA V + + ++S EY + Sbjct: 76 VMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSEDSVS--FLEYGDA 133 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE----KKFVQHMNNTSKNLGLS 148 + + G +++++AL +++ SAN+++ AIAES+ K + F+Q MN + LG + Sbjct: 134 SIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERCEELGCT 193 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---- 204 +H+ NA+G+ HYTTA DMA++ + F ++ Q I P TN Sbjct: 194 GSHWTNANGLHDENHYTTAHDMALIGSAV-YQFDKFREVTQTLNYTI-----PPTNLVNE 247 Query: 205 -----------WAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 W VG D G KTG+T + +V A D L+AV+L Sbjct: 248 SRTFQQNHKMLW-VGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 300 >gi|317500835|ref|ZP_07959047.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897715|gb|EFV19774.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium 8_1_57FAA] Length = 503 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 31/234 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ N+G ++ + PAS+TKL+TA V + + ++S EY + Sbjct: 60 VMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSEDSVS--FLEYGDA 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE----KKFVQHMNNTSKNLGLS 148 + + G +++++AL +++ SAN+++ AIAES+ K + F+Q MN + LG + Sbjct: 118 SIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERCEELGCT 177 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---- 204 +H+ NA+G+ HYTTA DMA++ + F ++ Q I P TN Sbjct: 178 GSHWTNANGLHDENHYTTAHDMALIGSAV-YQFDKFREVTQTLNYTI-----PPTNLVNE 231 Query: 205 -----------WAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 W VG D G KTG+T + +V A D L+AV+L Sbjct: 232 SRTFQQNHKMLW-VGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 284 >gi|225574472|ref|ZP_03783082.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM 10507] gi|225038322|gb|EEG48568.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM 10507] Length = 396 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 44/239 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 L++ TG ++ + D PAS TK+MTA VV E L T IT ++ + E P Sbjct: 39 LMEAETGTILYDKGMDQRMYPASTTKIMTALVVL----ENTEDLQTKITFTETGTKEVTP 94 Query: 92 SNSTFKK--GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ + G +T++ L ++ SAN+++ +AE + T++ FV+ MN ++ LG S Sbjct: 95 DSANIQAQLGEELTVEQCLYASLLASANEVSSQLAEFVGGTKEHFVEMMNLKAQELGCSD 154 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----------------SWRI----KTDFPQYM--- 185 THF N +G+ HYTTA D+A++ ++ I KT P+ + Sbjct: 155 THFTNPNGLPDENHYTTAHDLALIMQAAIQNETFREIESTQTYTIPATNKTATPRNLTNH 214 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 H + G N ++ G F G KTG T A+ +V +A + +LI V+L Sbjct: 215 HAMLVSG---------NPSYYEGAFAG----KTGHTDAAKDTLVTAAEKNGMTLICVVL 260 >gi|15902820|ref|NP_358370.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6] gi|116516506|ref|YP_816254.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39] gi|1620468|emb|CAA67776.1| D,D-carboxypeptidase [Streptococcus pneumoniae] gi|15458372|gb|AAK99580.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6] gi|116077082|gb|ABJ54802.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39] Length = 413 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|295425352|ref|ZP_06818055.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus amylolyticus DSM 11664] gi|295065128|gb|EFG56033.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus amylolyticus DSM 11664] Length = 432 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 32/243 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI----TISK--NAS 87 +D+ TG ++ D AS+TKL+T Y+ +K K+ TT + TI K N S Sbjct: 54 IDSKTGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKQISWTTKVKPTATIVKVANNS 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN KKG + T+ + +++SAN A+ +A+++ ++ FV+ M K G+ Sbjct: 114 EY--SNVPLKKGHSYTIKQLYQATLIESANGAAMCLAQAVSGSQVAFVKKMRAQVKKWGI 171 Query: 148 ------SATHFMNAH-------GVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGL 193 + N + GV ++ T +A+DMAI+ R+ DFP + I L Sbjct: 172 NDAKIYTVCGLPNGNLGSDAYPGVSKNAENTMSAKDMAIIGQRLINDFPAVLKTTSIAKL 231 Query: 194 EIK--GK--KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K GK + N NW + L DG+KTG T A+G + + + +I V+ Sbjct: 232 AFKDQGKTTQMENFNWMLKGLSQYDANLKVDGLKTGTTDAAGACFIGTIKKNGSRIITVV 291 Query: 244 LGA 246 +GA Sbjct: 292 MGA 294 >gi|38142311|dbj|BAD00958.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142319|dbj|BAD00962.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|332202728|gb|EGJ16797.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA41317] Length = 413 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+TAY Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITAY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|152974802|ref|YP_001374319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023554|gb|ABS21324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 423 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 19/222 (8%) Query: 34 LDTNTGHVIAE-NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +D TG V+ + N +H + PAS+TK++TA ++ K ++ + + + S Y Sbjct: 50 IDAKTGDVLYDKNAHEHAF-PASMTKVLTAILLMEHTKPEEQFTLSQAALDQEKSNY--- 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F+ G T+ + AL +L+V SAND+A AI E + + + F MN +K LG + +HF Sbjct: 106 QLEFQAGETVDRNTALMILMVLSANDVAYAIGEHIGGSIENFAHMMNEKAKQLGATDSHF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + +G+ HYTTA DMA+++ ++ +P+ + + + K + V F Sbjct: 166 VTPNGLHDPNHYTTAYDMAMITRGVQ-KYPEIL-----QAMNTKRTTVTTSRQTVSIFNK 219 Query: 213 AD--------GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 A+ G KTGFT + +V + +I V++ + Sbjct: 220 ANYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS 261 >gi|225856538|ref|YP_002738049.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae P1031] gi|38142339|dbj|BAD00972.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225726015|gb|ACO21867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae P1031] Length = 413 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|110803688|ref|YP_699253.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens SM101] gi|110684189|gb|ABG87559.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens SM101] Length = 423 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 22/260 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASL 56 + L+ +++++ + I + AE ++ Y LD TG +I D PAS Sbjct: 9 LSSILIALSVSLFAPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYPAST 68 Query: 57 TKLMTAYVVF-------SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 TK+MT+ + SF A + P T++ + P G M ++ +K Sbjct: 69 TKVMTSLLFAEHASKNDSFPYTADAKVQQPYTLNDSFGPIP-------VGEGMNANDLMK 121 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAND A IA+ + + +KF MN+ K LGL THF+ +G+ HY+TA D Sbjct: 122 ALLMFSANDAAAVIADGVAGSTEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYD 181 Query: 170 MA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGF 226 +A IL K + + + + + GKK N N +G G G KTGFT +G Sbjct: 182 LAVILQNAYKNPWVRETMALKDSDITVNGKKVLLENRNKELG-INGNIGGKTGFTTPAGR 240 Query: 227 NIVASAIQGDQSLIAVILGA 246 +V+ + + +I +L + Sbjct: 241 CLVSVYERNGRKIIGTVLNS 260 >gi|228990377|ref|ZP_04150342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228768903|gb|EEM17501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 411 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 7/216 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V+ + PAS+TK++TA ++ K ++ + + + S Y Sbjct: 39 IDAKTGDVLYDKNAHQHAFPASMTKVLTAILLMEHTKPEEQFTFSQPALDQEKSNY---Q 95 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND+A AI E + + + F MN +K LG +HF+ Sbjct: 96 LEFQVGETINRNTALTILMVLSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFV 155 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTTA DMA+++ ++ +P+ + K + + + + T+ Sbjct: 156 TPNGLHDPNHYTTAYDMAMITRGVQ-QYPEILQAMNTKRTTVTTSRQTVSIFNKATYFEN 214 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G KTGFT + +V + ++ V++ + Sbjct: 215 PYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVMAS 250 >gi|228996477|ref|ZP_04156116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|229004129|ref|ZP_04161930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228756990|gb|EEM06234.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228763109|gb|EEM12017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 411 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 7/216 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V+ + PAS+TK++TA ++ K ++ + + + S Y Sbjct: 39 IDAKTGDVLYDKNAHQHAFPASMTKVLTAILLMEHTKPEEQFTFSQPALDQEKSNY---Q 95 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND+A AI E + + + F MN +K LG +HF+ Sbjct: 96 LEFQVGETINRNTALTILMVLSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFV 155 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTTA DMA+++ ++ +P+ + K + + + + T+ Sbjct: 156 TPNGLHDPNHYTTAYDMAMITRGVQ-QYPEILQAMNTKRTTVTTSRQTVSIFNKATYFEN 214 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G KTGFT + +V + ++ V++ + Sbjct: 215 PYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVMAS 250 >gi|239623982|ref|ZP_04667013.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522013|gb|EEQ61879.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 337 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 22/214 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKL 110 PAS+TK+MTA V ++ L + + ++ +A P + + G T+TL+ L Sbjct: 113 PASITKIMTALVAI-----REGDLKSRVLVTDDAVITEPGATLCGIEPGDTLTLEQLLYG 167 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AIA + + F MN + LG + THFMN HG+ HYTTA D+ Sbjct: 168 LMLPSGNDAGAAIAVHIAGSVDAFADMMNEEALRLGATGTHFMNPHGLNDPDHYTTAYDL 227 Query: 171 AIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGM----- 216 ++ +R Y + K E K + +NW G DG+ Sbjct: 228 YLIFNEALKYPVFRQIVGTTAYTANYHNKNSEPVSKTWKGSNWFMTGERETPDGLKVFGG 287 Query: 217 KTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 KTG T A+G+ I+AS D+ I+V+L A R Sbjct: 288 KTGTTKAAGYCLIMASRDDSDKEYISVVLKADSR 321 >gi|322374184|ref|ZP_08048717.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150] gi|321276889|gb|EFX53961.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150] Length = 417 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 34/274 (12%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q ++++A+ ++ + P L+ +T+ + +++ TG V+ E P AS+TK Sbjct: 7 QHIIMVALILIGLVTPALAQEQTDDFNVAAKHAIAIESTTGKVLYEKDATTPDGVASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + N S+YP + + + S + LD+ L Sbjct: 67 ILTAYMVYKAIDQGKITWDTEV----NISDYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 123 LISSANSAAIALAEKISGTESAFVDTMKAQLKKWGITDAKLYNASGLNNKYLGDNRYPGS 182 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + ++ +G K N+ + G Sbjct: 183 KPDDENTMSALDVAIIADHLIKDYPQVLDITKQGEVDFEGDNKLTTHNYMLEGQDNYREG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T +G + VA + + SLI V++ A Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNA 276 >gi|328954547|ref|YP_004371881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca acetoxidans DSM 11109] gi|328454871|gb|AEB10700.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca acetoxidans DSM 11109] Length = 350 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 7/217 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++D +TG +++ PAS K+ TA V + L+ L + +S NA++ P Sbjct: 34 YCIMDADTGTILSAQNHQMMLPPASTLKVGTALVAINTLQ-----LQDKVPVSVNAAQAP 88 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K G +++ L +++ SAND A A+ E + +E +F + M + +G T Sbjct: 89 ASKIYLKPGEIYNVNDMLYAILLASANDAARALGERVSGSEDRFARFMTKQLREMGAYRT 148 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVGT 209 +F A G+ G Y+TA D+A + +R P K ++ GK+ N N + T Sbjct: 149 NFETASGLPSEGQYSTAYDLAFI-FRKAMQNPTLARIMNTKTFTLQDGKEVYNHNRFLFT 207 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 A KTG+T AS V GD+ +I ++G+ Sbjct: 208 TEYAVAGKTGYTRASKHTYVGLFRNGDKRIIVSMMGS 244 >gi|56963593|ref|YP_175324.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56909836|dbj|BAD64363.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 380 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 11/221 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ P AS+TK+MTA + + L +T+SK A S Sbjct: 39 LMEQSSGRVLYSKNEHQPLKIASITKIMTAILAI-----ESGKLDETVTVSKRAEGTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G +TL + + L+++S ND A+AIAE + + + FV MN ++ +G+S T F Sbjct: 94 SLYLVAGEKLTLRDLVYGLMLRSGNDAAIAIAEHVGGSVEGFVFLMNEKAEEIGMSNTLF 153 Query: 153 MNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVG 208 N HG+ H ++A DMA+L+ + +Y K KG K + N N + Sbjct: 154 RNPHGLDTDEDHLSSAYDMALLTQYAMGN-EEYRDISSTKDYRSKGDKVRVFHNKNRLLT 212 Query: 209 T-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G KTG+T + +V++A + LIAV L A D Sbjct: 213 EKYSYSTGGKTGYTKLAKRTLVSTASKDGLDLIAVTLNAPD 253 >gi|15614136|ref|NP_242439.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus halodurans C-125] gi|10174190|dbj|BAB05292.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus halodurans C-125] Length = 382 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 21/260 (8%) Query: 1 MRQF-LVIIAM-AMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNP 53 MR+F L+ I++ LS P AET + + L++ +TG V+ E Sbjct: 1 MRRFWLIAISLFVTLSVGIPERVSAETTEPASVSAQAAILMEQSTGRVLYEKDAHTSLRI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA L + + + +S NA S+ + G + L + + L++ Sbjct: 61 ASITKIMTA-----LLAIESGRMDEWVKVSSNAEGTEGSSLYLRAGEKIKLSDLVYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172 +S ND AVAIAE + + FV MN ++ LG+S T F N HG+ H HY++A DMA+ Sbjct: 116 RSGNDAAVAIAEHVGGSMDGFVYMMNQKAEELGMSNTVFQNPHGLDDHEDHYSSAYDMAL 175 Query: 173 LSWRIKTDFPQYMHYFQIK------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 L+ R + Y K G +I+ K N + + G KTG+T + Sbjct: 176 LT-RYAMNNETYQEISGTKTHRVDNGEQIRVWKNKN-RLLTQLYKYSTGGKTGYTKRAKR 233 Query: 227 NIVASAIQGDQSLIAVILGA 246 +V++A + D LI V L A Sbjct: 234 TLVSTASKDDLDLIVVTLNA 253 >gi|251782267|ref|YP_002996569.1| carboxypeptidase, penicillin-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390896|dbj|BAH81355.1| carboxypeptidase, penicillin-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 411 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 24/244 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +++ ++G V+ E P ASLTKL+TAY+V + + L+ + +S A E Sbjct: 36 VVEVDSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTD 95 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN F + T ++ + L+ +V S+N A+A+AE + +E FV M G++ Sbjct: 96 SSLSNVPFDQ-KTYSVQDLLEATLVASSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGIT 154 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + NA G+ ++ + +A+D+AI++ + DFP+ + + ++ Sbjct: 155 SGKIFNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVD 214 Query: 195 IKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G + N + G DG+KTG T +G +V ++I+ LI VIL A D + Sbjct: 215 FAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNA-DGS 273 Query: 251 TRNK 254 +N+ Sbjct: 274 DKNQ 277 >gi|325263916|ref|ZP_08130649.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324030954|gb|EGB92236.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 330 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKL 110 PAS TK+MTAYV K L +T+ NA+++ + G T TL + L Sbjct: 98 PASTTKVMTAYVTL-----KYGNLDDIVTVGPNATQFAADEQICGLQTGDTATLYDLLNG 152 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AVAIAE L + + F MN + LG + THF+N HG+ HYTTA D+ Sbjct: 153 LVLYSGNDCAVAIAEHLAGSVEAFADMMNTEAAALGATNTHFVNPHGLQDDNHYTTAYDL 212 Query: 171 AIL 173 ++ Sbjct: 213 YLM 215 >gi|154504396|ref|ZP_02041134.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149] gi|153795325|gb|EDN77745.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149] Length = 345 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 7/143 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D +V+ + P PAS TK+MTAYV K L +T+S+ A+++ Sbjct: 99 LFDVQGKNVLYADQIFEPLYPASTTKIMTAYVAL-----KYGNLDDIVTVSERATDFAED 153 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G ++L + L L++ S ND AVAIAE + + + FV MN ++NLG + T Sbjct: 154 EQVCGLQAGDQLSLRDLLNGLLLYSGNDCAVAIAEHVSGSVEAFVDKMNEEARNLGATGT 213 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 HF+N HG+ HYTTA D+ ++ Sbjct: 214 HFVNPHGLQNEDHYTTAYDLYLM 236 >gi|331001799|ref|ZP_08325321.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412773|gb|EGG92156.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon 107 str. F0167] Length = 327 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 22/234 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 +L + G ++A PAS TK+MTA V + L+ IT+ + + SE Sbjct: 83 ILVSTEGSLLASKAATKRMYPASTTKVMTALVALKY-----GNLSDEITVPEESVISEAG 137 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +TLD L L++ S ND A AIA + + FV+ MN+ +K +G T Sbjct: 138 ASLAGLNPGDKLTLDELLYGLMLPSGNDAANAIAVHIGGSVDNFVRMMNDEAKRIGAVDT 197 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY-------MHYFQIKGLEI-----K 196 +FMNAHG+ HYTTA D+ ++ D F Y + Y G E+ Sbjct: 198 NFMNAHGLSDENHYTTAYDLYLIFNEALKDSRFLNYAGTASYNVSYIAADGSEVTKSWRN 257 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDR 249 G +Y A L + KTG T A+G +V + + S I+V+L + +R Sbjct: 258 GNRYLTGQVATPGGLVVEAGKTGTTLAAGSCLVICSENKEGSKYISVVLKSKNR 311 >gi|293367840|ref|ZP_06614486.1| penicillin-binding protein 4 [Staphylococcus epidermidis M23864:W2(grey)] gi|291318031|gb|EFE58431.1| penicillin-binding protein 4 [Staphylococcus epidermidis M23864:W2(grey)] Length = 422 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 24/235 (10%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 T+ D N G V+ + + + +PAS+TKLMT Y+ F L K I I+ + + Sbjct: 55 TITDEN-GQVLYDYHGETSSDPASITKLMTLYLTFDALNNGKISKDQKIKITSDYEKMSA 113 Query: 91 -PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P+ ST KKG T T+D +K + + S+N + + E + + KF MN +K LG+ Sbjct: 114 LPNLSTVKLKKGQTYTIDEIMKQVSLASSNPATLILGEKIDGSTSKFTDRMNEKAKELGM 173 Query: 148 SATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 + THF N G + TT++D+++L + P+ ++Y ++ Sbjct: 174 NHTHFTNPSGASNDLLKPYEPKKYKDEAKTKTTSQDISLLIHSLLKKHPEVINYTKLTHG 233 Query: 194 EIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + + TN ++ +LG DG+KTG T G++I + Q L A IL Sbjct: 234 KQYNQDFETTNLSLKGEPEEYLGTDGLKTG-TSDEGYSIALTNNQDHLRLNATIL 287 >gi|196231311|ref|ZP_03130170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] gi|196224647|gb|EDY19158.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] Length = 295 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 25/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG +I E D AS KL+T+ +V + L + + + + P+ Sbjct: 65 LLDAKTGKIIFEMNADQRRPVASTQKLLTSLIV-----AETGDLDHKVHVEASDTWAEPT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K G+ + + L +L+V S ND+A A+A + + F MN + LG+ ++F Sbjct: 120 MLYIKPGNVYSRYDFLNVLLVHSMNDVARALARDNAGSLENFAARMNAKASELGMRNSNF 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-----------EIKGKKYP 201 +N +G+ G Y+TARDMA + Y + I+G+ + + + + Sbjct: 180 VNPNGLPIPGQYSTARDMA------QVALAAYRNPI-IRGIVCQKSVTWHYNDGRVRVFE 232 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 TN + + +GMKTG+T A+G +++SA + +IAV+LG ++N N S LL+ Sbjct: 233 TTNQVLKRYPLCNGMKTGYTEAAGHCLISSASHNGRDVIAVVLGD-NKNIWND-SYKLLA 290 Query: 262 MGF 264 G Sbjct: 291 FGL 293 >gi|225867885|ref|YP_002743833.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] gi|225701161|emb|CAW98054.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] Length = 411 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 23/243 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 ++ TG ++ ASLTKL+T Y+V +K + + + +S+ A + Sbjct: 34 VEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVILSEYALQLATDP 93 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN F++ T+ ++ ++ SAN AVA+AE + +E FV M + G+ Sbjct: 94 DISNPAFEQ-RPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRD 152 Query: 150 THFMNAHGV---VQHGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + GH TARD+A+++ ++ DFP+ + L+ Sbjct: 153 YRLVNASGLNNSMLKGHLYPGSQPDDENQMTARDLALIAQQLLQDFPEVLTISSQAQLKW 212 Query: 196 KGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 K P++N + G DG+KTG T +G ++ +A+Q + +I+VIL A +T Sbjct: 213 GEKALPSSNLLLAGREMGRAGVDGLKTGTTSQAGQTMITTAVQDNMRIISVILHADQSDT 272 Query: 252 RNK 254 + Sbjct: 273 DER 275 >gi|291546150|emb|CBL19258.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 388 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 28/228 (12%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MTA L K + +TIS+ E + F+ G +T+D L Sbjct: 165 PASITKIMTA-----MLALKYGNMDDTVTISQENVTLESGSQVAGFQAGDQVTMDQLLHC 219 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+V SAND A AIAE + + KFV+ MN+ + LG + THF N HG+ HYTT D+ Sbjct: 220 LLVYSANDAASAIAEHIGGSTDKFVEMMNSFAAELGCTGTHFTNPHGLQDENHYTTPYDI 279 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---------------- 214 ++ + ++P++ Q+ + K+ + + A T D Sbjct: 280 YLM-LKEALNYPEFTDITQMASYTVS-YKHSDGSDASATLPATDHYLTGEAATPKDVTIL 337 Query: 215 GMKTGFTCASGFNIVASAIQG--DQSLIAVILGALDRNTRNKVSASLL 260 G KTG T +G N +A Q + I++++GA ++ + SLL Sbjct: 338 GGKTGTTDKAG-NCLALLSQNAYGKPFISIVMGASSKDVLYQEMTSLL 384 >gi|289436027|ref|YP_003465899.1| hypothetical protein lse_2666 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172271|emb|CBH28817.1| unnamed protein product [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 445 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVAMMNKKAEELKLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P+ + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLIDDYPEVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|228985666|ref|ZP_04145819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774061|gb|EEM22474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 272 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 16/219 (7%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 MT Y+ L E L + IS +E P T K +T+ + L L++ N Sbjct: 1 MTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDRTTVR--DLLHTLLLTGNN 58 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGH---YTTARDMAIL 173 A+A+AE + E KF Q MN +K+L LS ++ F+NA G+ + TTA ++A L Sbjct: 59 RSALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKL 118 Query: 174 SWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWAVGTF------LGADGMKTGFTCASG 225 + ++ TDFP ++ ++ + K K NTN + + G DG++T F+ Sbjct: 119 ATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGN 178 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ V++A +GD LI+VIL A + N+ + LL GF Sbjct: 179 YSFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGF 217 >gi|264676435|ref|YP_003276341.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] gi|262206947|gb|ACY31045.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] Length = 165 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 70/124 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L + +S+ A + P Sbjct: 39 YLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQRMPVSERAWKMP 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +++ L +I++S ND +A+AE++ T + FV+ MN+ +K LG+ T Sbjct: 99 GSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNT 158 Query: 151 HFMN 154 + N Sbjct: 159 SYKN 162 >gi|30018287|ref|NP_829918.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29893827|gb|AAP07119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 438 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 34/280 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ + D + AS+TK+M+ Y+V + + K I +S+ A + Sbjct: 46 LVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LG+ Sbjct: 106 ASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGVK 165 Query: 149 ATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +N+ G+ H TT A+D+A L+ + D+P+ + +I E Sbjct: 166 NYKCVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKE 225 Query: 195 IKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K N NW V + G DG+KTG T +G + + I+V++ Sbjct: 226 FRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKT 285 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 R + L GF N+ +K Y++ S Sbjct: 286 SSHTARFDETKKLYDYGF--------ANFEVKQMYKKGSS 317 >gi|288871299|ref|ZP_06117136.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288863963|gb|EFC96261.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 465 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 32/251 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG+++ + + PAS+TKLMTA +V +K L +T SK A S Sbjct: 117 LMDAATGNLLYSKNAETKYYPASITKLMTALLV-----AEKCSLDDTVTFSKTAVTNLES 171 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + +G +T+ L L++KSAN++A +AE + F MN +K LG + Sbjct: 172 GAVTLGLVEGDKLTVRQCLYGLLLKSANEVANGLAEHTAGSISAFADMMNARAKELGCTN 231 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-------MHYFQIKGLEIKGKK--- 199 T+F+N +G+ HYTT DMA+++ + F +QI + + Sbjct: 232 TNFVNPNGLNDSNHYTTPHDMALIA---RAAFQNATVCKVASTLSYQIPATQKAAARTIS 288 Query: 200 ------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 YPN + + G G KTG+T +G +V A + LIAVI+ + ++T+ Sbjct: 289 LGHKMLYPNDS---RYYQGVIGGKTGYTSLAGNTLVTCAERDGVRLIAVIMKS--KSTQY 343 Query: 254 KVSASLLSMGF 264 +++LL GF Sbjct: 344 TDTSALLDYGF 354 >gi|294623044|ref|ZP_06701933.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317] gi|291597600|gb|EFF28762.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317] Length = 435 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G V + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTVENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|301794006|emb|CBW36404.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae INV104] gi|332204876|gb|EGJ18941.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA47901] Length = 413 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+TAY Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITAY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK F+ M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFIDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|291537069|emb|CBL10181.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 468 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 23/232 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P +++ +TG V+ + PAS+TK+MT + + + L +T S A + Sbjct: 47 PNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIAL-----ENSDLNDIVTFSDAAID 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + G MT++ L +++ SAN+ A A+AE + T + FV MN +K LG Sbjct: 102 NTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGC 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYM------HYFQIKGL 193 THF N HG+ HYT DMA+++ +RI +Y H Q Sbjct: 162 QNTHFANPHGLHDENHYTCCYDMALIARAAYQNETFRIIVGTARYTIPPTNKHAEQTDLQ 221 Query: 194 EIKGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YP TN V + G G KTG+T A+ +V A + +LI V++ Sbjct: 222 NHNEMLYPFQTNKYV--YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 271 >gi|225388033|ref|ZP_03757757.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme DSM 15981] gi|225045886|gb|EEG56132.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme DSM 15981] Length = 510 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 28/249 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 LL+ +TG ++ D + PAS+TKLMTA +V + L +T S A+ E Sbjct: 150 LLNASTGKLLFSKNGDTKFYPASITKLMTALLV-----AENCNLDDTVTFSSTATTNLEA 204 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + +G +T+ L L++KSAN++ A+AE + + KF MN + LG + Sbjct: 205 GAVSLNLVEGDKLTVRQCLYALLLKSANEVGNALAEHVAGSNAKFADMMNARAAALGCTN 264 Query: 150 THFMNAHGVVQHGHYTTARDMAILS------WRIKT-------DFPQYMHYFQIKGLEIK 196 THF N HG+ + HYTT DMA+++ ++T D P + + I Sbjct: 265 THFTNPHGLNDNDHYTTPNDMALIAKAAFENGTVRTVASTLSYDLPA-TKKNAARTISIG 323 Query: 197 GKK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 K YPN + + G G KTG+T +G +V + + LIAV++ ++T Sbjct: 324 HKMLYPNDSR---YYAGIIGGKTGYTSKAGNTLVTAVERDGVRLIAVVM--KSKSTHYTD 378 Query: 256 SASLLSMGF 264 + +LL GF Sbjct: 379 TKALLDYGF 387 >gi|257791061|ref|YP_003181667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella lenta DSM 2243] gi|317488221|ref|ZP_07946790.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA] gi|257474958|gb|ACV55278.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella lenta DSM 2243] gi|316912663|gb|EFV34203.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA] Length = 349 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 130/284 (45%), Gaps = 41/284 (14%) Query: 20 LSIAET----NKLPYY-----TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 LS AE ++LP + L+D + N D ASLTK+MTA V +L Sbjct: 41 LSAAERALPPDRLPDFDASCAALMDEDGTLWFGRNADDAA-QIASLTKIMTAIVAADWLD 99 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-- 128 +T I ++ A+ S++ +G +MT D+ALK L+ S ND A AIA++ Sbjct: 100 A-----STMIEVTPEAASVGESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGAR 154 Query: 129 ------------KTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYTTARDMA- 171 E FV+ MN + LGL + F N HG+ G Y+ A D+A Sbjct: 155 MLAQEGSGGDAYACEAAFVEAMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVAT 214 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASG 225 +L ++ D + F + ++ P NT+ +G++ GA KTG+T A+G Sbjct: 215 MLRAAMQIDLVRANIGFSQADITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAG 274 Query: 226 FNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 ++ +GD AV+LG+ + R SA+L + N++ Sbjct: 275 PCAASAVNRGDGHKYYAVVLGSSSKPQRFVDSAALYDWAYANRS 318 >gi|240144614|ref|ZP_04743215.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257203330|gb|EEV01615.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 468 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 23/232 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P +++ +TG V+ + PAS+TK+MT + + + L +T S A + Sbjct: 47 PNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIAL-----ENSDLNDIVTFSDAAID 101 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + G MT++ L +++ SAN+ A A+AE + T + FV MN +K LG Sbjct: 102 NTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGC 161 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYM------HYFQIKGL 193 THF N HG+ HYT DMA+++ +RI +Y H Q Sbjct: 162 QNTHFANPHGLHDENHYTCCYDMALIARAAYQNETFRIIVGTARYTIPPTNKHAEQTDLQ 221 Query: 194 EIKGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YP TN V + G G KTG+T A+ +V A + +LI V++ Sbjct: 222 NHNEMLYPFQTNKYV--YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 271 >gi|221632462|ref|YP_002521683.1| beta-lactamase [Thermomicrobium roseum DSM 5159] gi|221156002|gb|ACM05129.1| beta-lactamase [Thermomicrobium roseum DSM 5159] Length = 364 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 28/235 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D G + D P PAS TKLMTA VV +L+ ++ ITI + P Sbjct: 49 VDITAGVELWAQEADRPLPPASTTKLMTALVVRRWLRPDES-----ITIRSDDLVDPAVY 103 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK--------TEKKFVQHMNNTSK 143 +N+ F+ G +T+ + L +++ SA D A+A+A + F+ MN + Sbjct: 104 ANAGFQPGDRVTVTDLLAAMLIASAGDAALALARVAGERIDPEHDVPRTAFIDAMNQEAA 163 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------FPQYMHYFQIKGLEIKG 197 LGL + F G G +ARD+AI++ + +D +I G + + Sbjct: 164 RLGLRHSWFATPDGRDVPGQTVSARDLAIIAAAVLSDPLLAELVATRTREIEIAGPQSRR 223 Query: 198 KKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 NTN FL A G+KTG + A+G +VA+ +G+ ++ V+L + DR Sbjct: 224 ITVVNTN----QFLTEPDALGVKTGTSVAAGQCLVAAVRRGNDIVVLVLLSSRDR 274 >gi|288554201|ref|YP_003426136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288545361|gb|ADC49244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] Length = 547 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 31/246 (12%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKL 110 PAS K+MTA L +K L+ + + A+ P S + + G MTL+ L Sbjct: 149 PASTVKVMTA-----LLAIEKGNLSDRVVVGPGAATVPFDSSKAGVRPGDVMTLEQLLHG 203 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AVAIAE + + +FVQ MN ++ LG + T FMNAHG TT D+ Sbjct: 204 LMLPSGNDAAVAIAEHIGGSHWQFVQMMNQRARELGATNTTFMNAHGYDHPSQKTTVSDL 263 Query: 171 AILSWRIK--TDF------PQYMHYFQIKGLEIKGKKYPNTNWAV-------GTFLGADG 215 A + +F P Y ++ + K + NTN + + +G Sbjct: 264 AKIGAEASKHPEFLKLISTPTYATTYRNRAGSPVHKVWRNTNQMLHNQAYRHSSIIGG-- 321 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-----NKVSASLLSMGFYNKTDR 270 KTG+T S N+++ A G + VIL +R R N +S ++ + ++++++ Sbjct: 322 -KTGYTSVSRHNLISFAEAGGSTYTTVILRG-ERTQRYYDTTNMLSRAISARQQFDQSNK 379 Query: 271 KKINYI 276 K++ + Sbjct: 380 KQVRVL 385 >gi|315924182|ref|ZP_07920408.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622584|gb|EFV02539.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter alactolyticus ATCC 23263] Length = 454 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 159/362 (43%), Gaps = 67/362 (18%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPA 54 M F++I+ A+++ + + + +P YT ++ +G VI PA Sbjct: 1 MAVFVLILTFAVVTCLPAYAA------MPSYTGDEAVYAVEEKSGDVITAQNEHKRMYPA 54 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLI 112 S TK+MT V ++ +K + + I S S + KKG T T L+ Sbjct: 55 STTKMMTTLVALDYVADK---MDQQVKIGDEVSLITADSSKADLKKGDTCTWRQLFYGLL 111 Query: 113 VKSANDIAVAIAESLCK---------TEK---KFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + S ND A+AIA+++ + T+K KFV MN + L L +HF+N HG+ Sbjct: 112 LPSGNDAALAIAKNIGRAASGDRELGTDKAIDKFVSLMNRKAAQLQLEDSHFVNPHGLHD 171 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAV--------- 207 HYTTA D+ +S + P Q K K KK+ NTN + Sbjct: 172 ANHYTTAADLEKIS-AAALENPTIRKIVQTKVYSCKLKSGQKKWINTNSLIISTNDLAKV 230 Query: 208 --GTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--NTRNKVSA 257 + G A G+KTG T +G +V S+ GD++++AVIL + ++ N V Sbjct: 231 RESSHNGKQYNPYATGVKTGHTDEAGRCLVFSSKDGDKTMVAVILHSDNQIFTQANGVIN 290 Query: 258 SLLS----------MGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 SL S G+Y K +++ ++K ++++ S+ V + TT+ ++ Sbjct: 291 SLHSDFSRINWGKPSGYYRSVQLKHVHFADDNVLKLYFKEEASSMVETSEKSAYTTRLQL 350 Query: 304 IN 305 N Sbjct: 351 DN 352 >gi|266623051|ref|ZP_06115986.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288865192|gb|EFC97490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 309 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 22/234 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 + D + VI P PAS+TK MTA L K L+ +T+ + A +E Sbjct: 78 VFDLSDKTVIFGKNPFEKLYPASITKTMTA-----LLAIKYGNLSDEVTVPEEAVITESG 132 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + K G +T++ L L++ S ND AIA + + +KF MN ++ LG + T Sbjct: 133 ATLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMDGSIEKFADRMNEEARKLGATGT 192 Query: 151 HFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 HF+N HG+ HYTTA D+ ++ +R Y + + E K + Sbjct: 193 HFVNPHGLNDENHYTTAYDLYLIFNEAMKYPDFRKVIGTSSYDAVYALASGETTTKTWKQ 252 Query: 203 TNWAVG------TFLGADGMKTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 +NW + L A G KTG T A+G I+AS+ I+V+L A DR Sbjct: 253 SNWYMTGERNMPEGLTALGGKTGTTRAAGSCLIMASSGSSGMEYISVVLKAPDR 306 >gi|226325575|ref|ZP_03801093.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758] gi|225206058|gb|EEG88412.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758] Length = 472 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 28/253 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +G ++ D PAS+TK++TA V + L ITI++N+ + Sbjct: 83 VMEAKSGAILYAKNIDGKAYPASITKILTALVAL-----ENGNLDDKITITQNSVDCVAE 137 Query: 93 NSTFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS 148 + G ++L++AL L++ SAN++A AIAE++ FV MN +K LG Sbjct: 138 GDAYIGMIAGEEISLNDALHALLMASANEVAYAIAENVGGLGYDGFVAKMNERAKELGAV 197 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + F N +G+ HYTTARDMA+++ + + ++ Q + I N Sbjct: 198 NSDFENPNGLNAQNHYTTARDMALITQELLENHEEFKTIAQTQQYTIGATNLVNQ---AR 254 Query: 209 TFLGADGM---------------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 TF +D M KTG+T + +V+ A + LI+V+L +N Sbjct: 255 TFQQSDMMFYEGNDYYYPKTIAGKTGYTDEALNTLVSCAADDNLELISVVLKTHGKNVYP 314 Query: 254 KVSASLLSMGFYN 266 S +LL GF N Sbjct: 315 D-SINLLEYGFNN 326 >gi|168070883|ref|XP_001786972.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660038|gb|EDQ48214.1| predicted protein [Physcomitrella patens subsp. patens] Length = 228 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 LL+ TG ++ PD P PAS++K+M+ Y+V +K+KK + +S+ A Sbjct: 59 LLEATTGKILYATNPDVPLPPASMSKMMSEYLVQEAVKQKKISWDEQVPVSEYAFYVAKI 118 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S G + ++ K + V SAND V +AE + +E FVQ MN +K LG++ Sbjct: 119 SDASGVYLNAGESFSVKELYKAMAVVSANDATVLLAEKVAGSEPNFVQMMNKKAKELGMT 178 Query: 149 ATHFMNAHGVV--QHGHYT----------TARDMAILSWRIKTDFPQYMH 186 T F+ + G+ + G Y+ +ARD AIL+ + DFP+ + Sbjct: 179 NTSFVTSTGLPANELGPYSVQTDQVENLMSARDSAILARALIRDFPEAIE 228 >gi|111220633|ref|YP_711427.1| putative D-alanyl-D-alanine carboxypeptidase [Frankia alni ACN14a] gi|111148165|emb|CAJ59835.1| Putative D-alanyl-D-alanine carboxypeptidase (partial match) [Frankia alni ACN14a] Length = 541 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 14/251 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A + P P PAS K++TA V L + IT+ +NA Sbjct: 84 WLVADAGSGAVLAASRPHAPDLPASTMKILTALTVLPGLPPDRV-----ITVDENAPRVD 138 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ + +++ S ND VA+ E+ T + MN +++LG T Sbjct: 139 GTKVGLVPGVGYTVRDLATAMMISSGNDATVALVEAAGGT-AAVLARMNALARSLGTRET 197 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNW 205 + G+ G T+ D+A+L R + P Y I + G+ + N N Sbjct: 198 VAGDPTGLDSPGQVTSVYDLAVLG-RAALNDPSVRGYLTIPRASLAGRGDQRFEIQNHNA 256 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + T+ GA G+K G+T A+G V +A +G ++LI +L A + + +LL GF Sbjct: 257 LLRTYDGAVGVKNGYTVAAGATFVGAATRGGRTLIVALLRAAPAYGTD--ARALLDWGFA 314 Query: 266 NKTDRKKINYI 276 + + Y+ Sbjct: 315 HADQVTPVGYL 325 >gi|73667472|ref|YP_303488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str. Jake] gi|72394613|gb|AAZ68890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str. Jake] Length = 383 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 82/162 (50%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D + ++ E+ D + +S++ LMT YV F ++K + SK A + + Sbjct: 40 IFDFLSETMLLEHNIDEQFVSSSMSNLMTLYVTFFYIKAGFVRMEDKFKTSKEAWQKGGN 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G + + + + +I SAND + +AE + ++++FV+ MN ++ L L+ +HF Sbjct: 100 SIFLRAGQLVAVRDLINGIITTSANDACITLAEGISGSQEEFVKEMNRIAQKLNLTKSHF 159 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 N GV +ARD+ L + DFP+Y H F K + Sbjct: 160 TNVIGVQDQNQVMSARDLITLMVNLFKDFPEYYHLFSKKDFK 201 >gi|218458344|ref|ZP_03498435.1| putative penicillin-binding protein precursor [Rhizobium etli Kim 5] Length = 122 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F V A L++I S+A+ N + L+D TG V+ W PASLTKLMT Y Sbjct: 17 FTVAATAAFLASI----SLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVY 69 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSA Sbjct: 70 TVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSA 122 >gi|298245363|ref|ZP_06969169.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297552844|gb|EFH86709.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 633 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 12/240 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD +TG + P S TKLMTAY+ K + + T I ++ + Sbjct: 293 VLDADTGKTLYAQNPLMHLPMLSTTKLMTAYLAAHMGKPDQRITIT-DAIDRDLQNDLSA 351 Query: 93 NSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +S+ KKG T TL L L++ S ND A+ IA++L FV MN L Sbjct: 352 DSSLMGVKKGETYTLKELLYGLMLVSGNDAAIVIADALSGNVPAFVAKMNQQLGTWNLHN 411 Query: 150 THFMNAHGVVQHGHYTTARDMAI-----LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 TH+MN HG++ HY++A D+A LS + + HY + N N Sbjct: 412 THYMNPHGLIVPNHYSSAHDLAYIGRYSLSDPLIHEVSATQHYLIPGNGDHAAHDMYNGN 471 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG K G+ FN V S ++ LI V L D T + L++ GF Sbjct: 472 QFLWWYPGVDGGKPGWDGEKNFNQVISCVRNQHHLIGVTLHTSDWWTDMR---DLMNWGF 528 >gi|47570691|ref|ZP_00241288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47552642|gb|EAL11096.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 259 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 27/216 (12%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV------VQHGHYT--------TARDMAILSWRIKTDFPQYM-----HYFQIKGLE 194 NA G+ +H T +ARDM ILS + T +P+ + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 195 IKGKKYPNTNW----AVGTFLGADGMKTGFTCASGF 226 K + N NW A + G +G+KTG + +G+ Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTNGLKTGSSDTAGY 258 >gi|325830849|ref|ZP_08164233.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1] gi|325487256|gb|EGC89699.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1] Length = 347 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 31/241 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK+MTA V +L +T I ++ A+ S++ +G +MT D+ALK L+ Sbjct: 83 ASLTKIMTAIVAADWLDA-----STMIEVTPEAASVGESSAGLAQGDSMTFDDALKALLT 137 Query: 114 KSANDIAVAIAESLC--------------KTEKKFVQHMNNTSKNLGLSATHFMNAHGV- 158 S ND A AIA++ E FV+ MN + LGL + F N HG+ Sbjct: 138 ASGNDAASAIAQAAGARMLAQKGSGGDAYACEAAFVEAMNAKAAELGLENSFFANPHGLD 197 Query: 159 ---VQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVG 208 G Y+ A D+A +L ++ D + F + ++ P NT+ +G Sbjct: 198 FDAFAQGQYSCAADVATMLRAAMQIDLVRANIGFSQADITVQRDGAPVTLALENTDALLG 257 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ++ GA KTG+T A+G + +GD AV+LG+ + R SA+L + N+ Sbjct: 258 SYPGACAAKTGYTLAAGPCAATAVNRGDGHEYYAVVLGSSSKPQRFVDSAALYDWAYANR 317 Query: 268 T 268 + Sbjct: 318 S 318 >gi|329122055|ref|ZP_08250663.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus DSM 19965] gi|327466862|gb|EGF12378.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus DSM 19965] Length = 323 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 19/241 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D NTG + + PAS TK++T + L+E L I+ NA++ + Sbjct: 63 IADGNTGKFLGGKDSELRVYPASTTKILTCIIA---LEEGHDKLNDNALITPNATKQDGT 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K ++L L +++ S ND AV++AE++ + F++ MN +KN+G ++F Sbjct: 120 CLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVGGDYETFIKLMNAKAKNIGAVNSNF 179 Query: 153 MNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +NA+G+ HYTTA DMA ++ +R P +M ++ + ++ N N Sbjct: 180 VNANGLTDKNHYTTASDMAKIAVYAMKNQNFRKIVKEPFHMMTYRDGTI----RRIENRN 235 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + GA+G+KTG T A+G +VASA + ++ I D N V LL G Sbjct: 236 EFLESGYEGANGIKTGMTEAAGDCLVASAEREGHLVVVSIYN--DENRWEDVK-KLLDYG 292 Query: 264 F 264 F Sbjct: 293 F 293 >gi|307704894|ref|ZP_07641785.1| penicillin-binding protein 3 [Streptococcus mitis SK597] gi|307621508|gb|EFO00554.1| penicillin-binding protein 3 [Streptococcus mitis SK597] Length = 413 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSITLSTPVDI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + +PQ + + Sbjct: 151 IKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I VIL A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVILNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N ++ +A+ M + + T Sbjct: 271 QDNNPYSRFTATSSLMDYISST 292 >gi|310658666|ref|YP_003936387.1| serine-type d-ala-d-ala carboxypeptidase [Clostridium sticklandii DSM 519] gi|308825444|emb|CBH21482.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Clostridium sticklandii] Length = 433 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 26/254 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G ++ E + P PAS TK+MTA + L L IT+ ++ S Sbjct: 40 LIEIDSGEILYEKNANAPMYPASTTKIMTALLALEHLN-----LEDKITVPEDMGPADGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+ L L+VKSAND AV +A ++ + F MN +K++G + T F Sbjct: 95 AMYLLPGEVFTVRELLDGLLVKSANDAAVLLARTISGDIQSFATLMNQRAKDIGCANTSF 154 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI----KGKKYPNTN-- 204 N +G+ H +A DMA+++ + F + + + E + + + NTN Sbjct: 155 ANPNGLHDPSHTISAHDMALIAREAMKNATFRELVSQVNVTLNETPQTPEKRYFRNTNRF 214 Query: 205 -WAVGTFL-----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W+ + DG+KTG+T +G +V+S + D +I+V+ A + Sbjct: 215 LWSTSKIIYNNEYIPIKYEVVDGIKTGYTGEAGNCLVSSGKKNDIRVISVVFKASGYDVY 274 Query: 253 NKVSASLLSMGFYN 266 + S LL GF N Sbjct: 275 -RDSRLLLDYGFDN 287 >gi|229074634|ref|ZP_04207657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] gi|228708516|gb|EEL60666.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] Length = 407 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 34 IDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY---Q 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ Sbjct: 91 IEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFV 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTT D+A+++ ++ +P+ + K + + + + + Sbjct: 151 TPNGLHDPNHYTTPYDIAMITRDVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFEN 209 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 210 PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMAEYS 261 >gi|294496884|ref|YP_003560584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|295702251|ref|YP_003595326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] gi|294346821|gb|ADE67150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|294799910|gb|ADF36976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] Length = 451 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 37/281 (13%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPWN 52 +Q + +IA+ +++++F F+S + + L++ +TG V+ D Sbjct: 7 KQLICVIAVMLMASVF-FVSTQASAAPKTDDIGVEADAAILVEASTGKVLYGKNTDALLG 65 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNAL 108 AS+TK+MT Y+V +K+KK + +SK A+ +Y SN + T+ Sbjct: 66 IASMTKMMTEYLVLESIKDKKLSWDQRVPVSKYAAKISQDYGLSNVPLIENQKYTVKELY 125 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHGHYT 165 + + SAN A+A+AE++ +E+ F++ MN T+K L + + F+N+ G+ + G Y Sbjct: 126 DAMAIYSANGAAIALAEAVSGSEENFIKLMNETAKRLNMGESKFVNSTGLSNSLLKGMYP 185 Query: 166 -----------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWA----- 206 +AR +A L++ + D+P+ + + + + T NW Sbjct: 186 KGTKEEDENLLSARAVATLAYHLIHDYPESLEVAKTPSKMFRQGQQGETKMNNWNKMLPG 245 Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G DG+KTG T +G +A + I V++ A Sbjct: 246 FSAAYSGVDGLKTGHTDFAGQCFTGTAERNGVRYITVVMNA 286 >gi|270290040|ref|ZP_06196266.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4] gi|270281577|gb|EFA27409.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4] Length = 415 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 133/283 (46%), Gaps = 37/283 (13%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETNKL--PYYTL-----LDTNTGHVIAENYPDHPW 51 M++ L++IA +L + + P + +T+ L P T +D+ TG V+ E + D Sbjct: 1 MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNA 107 AS++K+++AY++ ++ K P+ I+ + ++ +N G T+ N Sbjct: 61 PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKAYTVKNL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----- 162 L ++ SAN +A+ ++ + +KFV M T ++ G+ NA G++++ Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDEMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180 Query: 163 ---------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-- 211 + +A DMA++ + +FP+ + +I+ L+ T L Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240 Query: 212 GA--------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GA DG+KTG + A+G + VA+ + +I+V+LGA Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFVATGKVNQRRIISVVLGA 283 >gi|169827425|ref|YP_001697583.1| hypothetical protein Bsph_1859 [Lysinibacillus sphaericus C3-41] gi|168991913|gb|ACA39453.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 292 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 27/236 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ VI PASLTK+MT V + + + I N E S Sbjct: 56 LIDKNSEEVIY---------PASLTKMMTVLVAIEQIPNLQEEIVLGNNIFNNLYEANAS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F +TL++ L ++ S + ++ +AE + +E+KFV MN ++ LG+ THF Sbjct: 107 LAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQLGMKNTHF 166 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQY--MHYFQIK-------GLEIKGKKYP 201 MN G+ HYTT +DM+ +L + + D F Q + IK G+ K + Sbjct: 167 MNTTGLHHSDHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGITFTNKMFQ 226 Query: 202 N-TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 N T A+ G LG KTG+T +G + + A Q I V +GA + N+R + Sbjct: 227 NMTTRALPGGEILGG---KTGYTDDAGLCLASLATINGQEYILVTVGA-EGNSRTE 278 >gi|148379813|ref|YP_001254354.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|148289297|emb|CAL83393.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|322806091|emb|CBZ03658.1| penicillin-binding protein DacC [Clostridium botulinum H04402 065] Length = 378 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG + L L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|118362318|ref|XP_001014386.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89296153|gb|EAR94141.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 988 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 37/234 (15%) Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 P ASLTK+MT Y++ +++KK T I +S+ A+ +++ + G +++ + L Sbjct: 674 PREVASLTKIMTCYIICQAIQKKKIKQTEQIKVSRAAASMIGTSAYLRSGDQLSVWDLLH 733 Query: 110 LLIVKSANDIAVAIAESL------------------------CKTE---KKFVQHMNNTS 142 L++ S ND A A+AE + CK + K F++ MN + Sbjct: 734 GLMLPSGNDAAFALAEYMGRILFFEDNDYKEQLQQNPNSFENCKAKDAIKCFLKEMNRVA 793 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS---------WRIKTDFPQYMHYFQIKGL 193 K+L L+ T + N HG+V + ++A D+ LS +R QY + K Sbjct: 794 KDLKLANTKYSNPHGLVNKSNRSSALDICKLSAHCLTKSQLFRQIVKTKQYTCQVRNKQG 853 Query: 194 EIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 I+ + NTN + + DG+KTG TC +G + S D+ I IL Sbjct: 854 SIRIASWENTNKCLLRYNTICDGVKTGVTCTAGPCLTTSWRVKDRHFIITILKC 907 >gi|294673565|ref|YP_003574181.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23] gi|294471981|gb|ADE81370.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23] Length = 280 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 122/239 (51%), Gaps = 13/239 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +TG VI+E AS+TK+MTA + +K L+ I I+++ Sbjct: 37 WMLVDDSTGIVISEKCGFERRYMASITKMMTALIAL-----EKGNLSDSIDITEDVFINR 91 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +G M LD +++++ S ND A A+A+ + +F MN ++ LG+ +T Sbjct: 92 DSRVRLGQGYVM-LDLIYEMMMI-SDNDAAYALAKHVGGDTLRFYDLMNQKAQYLGMDST 149 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKY---PNTNW 205 HF N +G+ ++++A D+ L+ D F + + K + + ++ N+N Sbjct: 150 HFANPNGMPNDNNFSSAADLVKLARYAMRDTMFASIVGTAE-KAVPLTDGRHMDCRNSNA 208 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + T+ G G+KTG+T +G+ + +SA + +L V+L + TR SA+LL GF Sbjct: 209 LLHTYEGCIGIKTGYTRQAGYCLASSATRNGHTLYLVLLNSRRHATRFTESAALLDYGF 267 >gi|317132149|ref|YP_004091463.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] gi|315470128|gb|ADU26732.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] Length = 443 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 21/239 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ +TG VI E D PAS+TKLMTA + + K AM T +T++K+ + P Sbjct: 39 LVNADTGAVIYEKNADAKVYPASITKLMTA--LLTMQKYSNAM-DTVLTVTKD--DIAPL 93 Query: 93 NST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + T K G +T+ L L+VKS ND A+ +A ++ + FV MN +K +G Sbjct: 94 SGTDSSVLGLKPGEQITVRQLLYGLLVKSGNDCAMVLARNVGGSVSAFVDMMNAEAKKIG 153 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKT-DFPQYM---HYFQIKGLEI-KGKKYP 201 TH+ N G+ HYTTA+D+ +++ ++ DF + + I + K Sbjct: 154 ADHTHYANPEGLQDPNHYTTAKDVYLIARQVMANDFLAGVVDTQSYTIPATNMTTAVKIT 213 Query: 202 NTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 NTN + + G+KTG T +G +V+ A + AV++G + T V Sbjct: 214 NTNLLLSSGSKYYLSSVKGIKTGTTTDAGACLVSMAQSKGMTYYAVVMGGKETTTNGVV 272 >gi|212637859|ref|YP_002314379.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212559339|gb|ACJ32394.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 447 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 44/318 (13%) Query: 2 RQFLV-IIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASL 56 + F++ I+AM P + AE + L L++ TG ++ + D AS+ Sbjct: 11 KSFIISIVAMFSFMMTLPQQTKAEEDVLNIEADAAILVEAETGKILYQKNIDAVLGIASM 70 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLI 112 TK+MT Y++ + E + T+S+ + SN +K T+ + + Sbjct: 71 TKMMTEYLLLEAIHEGRVKWDQEYTVSEYVYQISQKRDLSNVPLRKDGKYTVRELYEAMA 130 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158 + SAN VAIAE + +E FV+ MN ++ LGL F+NA G+ Sbjct: 131 IYSANGATVAIAEIVGGSETNFVKMMNEKAQELGLKDYKFVNATGLNNKDLGGLHPAGSG 190 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYPNTNWA----V 207 + +AR +A L++ + +FP+ + YF+ +G + + K N NW V Sbjct: 191 DNEENVMSARAVATLAYHLYHEFPEILETASIPRKYFR-EGTDDQ-IKMDNWNWMLPGLV 248 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG+T +G+ +A + I V++ N + + LS + + Sbjct: 249 AAYEGVDGIKTGYTEFAGYCFTGTAERNGMRFITVVM-----NAKTNGKGTYLSR--FEQ 301 Query: 268 TDRKKINYIIKDFYQQNL 285 T RK ++Y ++ Q L Sbjct: 302 T-RKMLDYAFSNYTVQKL 318 >gi|225568832|ref|ZP_03777857.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM 15053] gi|225162331|gb|EEG74950.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM 15053] Length = 348 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+D +TG IA N D PASLTK+MTA + + ++T P +N Sbjct: 91 PSAVLVDLDTGKTIAGNNSDDTIYPASLTKIMTAILAVEKTENLDEIITLPYDFFQNLYA 150 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + F+ G + L + L +++ S + +A A+ + +E+ FV+ MN ++ LG+ Sbjct: 151 EEASMAGFEPGEAVCLRDLLYGILLPSGAECCLAFADKIAGSEEDFVKLMNKKAEALGME 210 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL 173 T F N+ G+ HY+T D+A+L Sbjct: 211 HTQFCNSTGLHDDEHYSTVEDLALL 235 >gi|38142333|dbj|BAD00969.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTISLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYT------- 165 N A+A+AE + +EK FV M G+ +N G+ ++ Y Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLRDNIYPGSKKDEE 180 Query: 166 ---TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|78186778|ref|YP_374821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM 273] gi|78166680|gb|ABB23778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM 273] Length = 301 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 23/262 (8%) Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPY---YTLLDTNTGHVIAENYPDHPWNPA 54 M++F L + A L + F S AE ++ P Y + D V + PA Sbjct: 1 MKRFGLSLAALFFAALVSQLSFSSPAEASRPPVIDSYIVKDLGYSRVFMQKDTSRLIRPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTK++TA + + L + IS A+ P+ + F+ G + L + +K +V Sbjct: 61 SLTKILTAVIAL-----ESGKLDQVVVISPEATGVEPTKAGFRPGDRILLLDLVKASMVN 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARD-M 170 S+ND A AIA L + +KFV+ MN ++ +G+ ++ F N G G+Y+TA D + Sbjct: 116 SSNDAAFAIAIHLSGSVEKFVRAMNYRARAIGMKSSTFTNPAGFDTGRYTGNYSTAEDLL 175 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCAS 224 A+ + I P + ++ + ++ K+ N + + A G+KTGFT ++ Sbjct: 176 ALTEYAIHN--PLFNEITMLESIVVRDKRSGRYYLLRTHNKLLARYPYAVGIKTGFTRSA 233 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 G ++A A + ++ ++ V+L A Sbjct: 234 GKCLIARARKENRDMLLVMLNA 255 >gi|225858672|ref|YP_002740182.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 70585] gi|225720794|gb|ACO16648.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 70585] Length = 413 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 31/294 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Sbjct: 3 KTFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLIT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVK 114 Y+V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V Sbjct: 63 VYLVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVS 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQ 160 SAN A+A+AE + +EK FV M G+ +N G+ Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216 + +A D+AI++ + +PQ + + G +TN+ + G DG+ Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 KTG T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|154502526|ref|ZP_02039586.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149] gi|153796922|gb|EDN79342.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149] Length = 423 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 138/323 (42%), Gaps = 45/323 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ + AS TK+MT + ++A +++S NA+ P Sbjct: 61 LMDADSGRILFAKNAETERPMASTTKIMTCILAL-----ERADPDESVSVSANAAAQPRV 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G L + L L+++S ND AV +AE L + ++F MN ++ LGLS THF Sbjct: 116 RLGTVEGQKFKLKDLLYSLMLESHNDTAVMLAEHLAGSVEQFADEMNQKARELGLSHTHF 175 Query: 153 MNAHGV--VQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------EIKGKK 199 + +G+ G H TTA ++A + + P+ + +I G+ + + Sbjct: 176 VTPNGLDGADDGGSHRTTAEELARIMRYCVMESPKRKEFLEITGVSSYQFSDLEQTQTYS 235 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GA KTGFT +G+ V GAL R R + A L Sbjct: 236 CINHNAFLTMMEGAVSGKTGFTGEAGYCYV---------------GALKREKRTFIVA-L 279 Query: 260 LSMGF-----YNKTDRKKI-NYIIKDFYQQNLSNEVPNISEEVC-----TTQKEIINYNT 308 L+ G+ Y D KK+ Y ++ F Q++ V + QKE Y Sbjct: 280 LACGWPNNRSYKWEDTKKLMEYGLEHFEYQSMKGAGQKFKIRVTDGIPDSNQKEAYTYAE 339 Query: 309 QMKEAKDKESHFIDFEKITLLKN 331 + E + D+E + + +N Sbjct: 340 ALSEQSNLSFLLADWESVQVRRN 362 >gi|78189048|ref|YP_379386.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii CaD3] gi|78171247|gb|ABB28343.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii CaD3] Length = 473 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 124/250 (49%), Gaps = 15/250 (6%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 +++ Y L + T ++ P PASLTK++T S + + L + I++ Sbjct: 61 DRISAYMLKEYGTPSMLMGKNISTPLPPASLTKVLT-----SIMAIESGRLLQDVVITRE 115 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 ++ PS + F G + L + +K +V S+ND A AI L + FV MN ++ + Sbjct: 116 STLVEPSKAGFTVGERIKLIDLVKAAMVSSSNDAAFAIGIYLSGSVDAFVDAMNYKARQI 175 Query: 146 GLSATHFMNAHGVVQ---HGHYTTARD-MAILSWRIK-TDFPQYMHYFQIKGLEIKGKKY 200 G+ +HF N G + G+ +TA D M + + ++ + F Q + +E +K Sbjct: 176 GMRNSHFTNPAGYDRGQYAGNVSTAEDLMRLTEYAVRNSTFNQIARMDRAVFVEQSTRKV 235 Query: 201 PNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + + + G+KTG+T +G ++A A++GD+ L+ V+L A + +R +A Sbjct: 236 YNLRTHNKLLAHYPHSVGIKTGWTTRAGGCLIARAVKGDKDLLVVMLNA--KISRWDTAA 293 Query: 258 SLLSMGFYNK 267 S+ + F ++ Sbjct: 294 SMFDLAFNDR 303 >gi|291520325|emb|CBK75546.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens 16/4] Length = 463 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 29/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 +++ TG ++ D PAS+TK+MTA +V +K L + S A +E Sbjct: 47 IMEQETGTILYSKNIDEVHYPASITKIMTALIVL-----EKCKLDETVKFSAEAVYGTEL 101 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ MT++ L ++++SAN+ A A+ E + FV+ MN +K LG + Sbjct: 102 GSSSIARDVNEEMTVEQTLYGMMLESANECAYALGEHVAGDIPSFVKMMNEKAKELGCTN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---------- 199 THF N +G+ HYTTA DMA++S R P++ K I Sbjct: 162 THFNNTNGLPDEEHYTTAHDMALIS-RAAFAIPKFAEIVGTKNYTIPPTNKHADPTPLNN 220 Query: 200 -------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 Y + + LG KTG+T +G +V A + +LI V++ Sbjct: 221 HHQMLHYYKSNKYIYDYCLGG---KTGYTAVAGATLVTYAKKDGMTLICVVM 269 >gi|306829382|ref|ZP_07462572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC 6249] gi|304428468|gb|EFM31558.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC 6249] Length = 413 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 29/238 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG V+ E P AS+TKL+T Y+V+ L++ L+TP+ I S+YP Sbjct: 35 VEATTGKVLYEKDASQPVEIASITKLVTVYLVYEALEQGTISLSTPVDI----SDYPYHL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + D+PQ + + Sbjct: 151 IQDATIVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIRDYPQVLEITKKAS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + +TN + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGLEIHSTNSMLEGMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVLNA 268 >gi|229095861|ref|ZP_04226840.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|229114814|ref|ZP_04244228.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228668879|gb|EEL24307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228687694|gb|EEL41593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 407 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 34 IDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY---Q 90 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ Sbjct: 91 IEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFV 150 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTT D+A+++ ++ +P+ + K + + + + + Sbjct: 151 TPNGLHDPNHYTTPYDIAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSIYFEN 209 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 210 PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMAEYS 261 >gi|229091482|ref|ZP_04222692.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] gi|228691856|gb|EEL45603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] Length = 221 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 18/176 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 L++ N+G ++ E D AS+TK+M+ Y+V ++ K + IS+ A + Sbjct: 32 LVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQD 91 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + G + T+ + +++ SAN +A+AE + E FV+ MN+ SK G+ Sbjct: 92 RSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMK 151 Query: 149 ATHFMNAHGVVQH---GHY-----------TTARDMAILSWRIKTDFPQYMHYFQI 190 F+N+ G+ H GH+ +ARD AIL+ R+ DFP+ + +I Sbjct: 152 NYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPEMLDTAKI 207 >gi|291540307|emb|CBL13418.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 299 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 23/232 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P +++ +TG V+ + PAS+TK+MT + + + L +T S A + Sbjct: 27 PNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIAL-----ENSDLNDIVTFSDAAID 81 Query: 89 YPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + G MT++ L +++ SAN+ A A+AE + T + FV MN +K LG Sbjct: 82 NTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGC 141 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYM------HYFQIKGL 193 THF N HG+ HYT DMA+++ +RI +Y H Q Sbjct: 142 QNTHFANPHGLHDENHYTCCYDMALIARAAYQNETFRIIVGTARYTIPPTNKHAEQTDLQ 201 Query: 194 EIKGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YP TN V + G G KTG+T A+ +V A + +LI V++ Sbjct: 202 NHNEMLYPFQTNKYV--YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 251 >gi|16804791|ref|NP_466276.1| hypothetical protein lmo2754 [Listeria monocytogenes EGD-e] gi|224502838|ref|ZP_03671145.1| hypothetical protein LmonFR_09994 [Listeria monocytogenes FSL R2-561] gi|16412254|emb|CAD00967.1| lmo2754 [Listeria monocytogenes EGD-e] Length = 445 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|210614029|ref|ZP_03290008.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787] gi|210150881|gb|EEA81889.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787] Length = 325 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 17/220 (7%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 VI + D PASLTK+MT + + +A +T I S + F G Sbjct: 85 VIFQFQQDEKIFPASLTKIMTCILAIENINNLEATITLEPEIFDELYAQNASMAGFLPGE 144 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + + L I+ S + ++A+AE + +E+ FV+ MN +K+LG++ THFMNA G+ Sbjct: 145 NAKIIDILYGNILPSGGECSIALAEYVAGSEQAFVELMNEKAKDLGMNNTHFMNATGLHN 204 Query: 161 HGHYTTARDMAI-LSWRIK----TDFPQYMHYF------QIKGLEIKGKKYP-NTNWAV- 207 HYTT +D+ I L + +K D Q YF + G + W + Sbjct: 205 ESHYTTVKDIGILLQYALKNQTFNDIFQSKSYFVAPTDQHLSGFTFYSSMFKLRDQWELD 264 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G +G KTG+T +G + + AI + IA+ + A Sbjct: 265 EGEIVGG---KTGYTDEAGLCLASEAIVNGRKYIAITVNA 301 >gi|34557129|ref|NP_906944.1| penicillin-binding protein [Wolinella succinogenes DSM 1740] gi|34482844|emb|CAE09844.1| PENICILLIN-BINDING PROTEIN [Wolinella succinogenes] Length = 283 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 11/200 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA + K + +TI+ + PS + FK G L + +K + Sbjct: 58 PASLTKIMTAILAIESGK-----MNEVVTITPEMTLVEPSKAGFKVGEKFYLRDLVKSAL 112 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++SAND A I + + + FV+ MN +K LG+ T+F NA G H +TA D+ + Sbjct: 113 IQSANDSATGIGIFVGGSSENFVKMMNKKAKALGMKETNFTNAAGFDIGDHLSTAHDLML 172 Query: 173 LS-WRIKT-DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD----GMKTGFTCASGF 226 L+ + IK F + + + I K T+W L G+KTG+T +G Sbjct: 173 LAEYAIKNKSFNEIVKMNKHTFSPINNKNKIYTSWTHNKLLRTHKYTIGIKTGYTSKAGP 232 Query: 227 NIVASAIQGDQSLIAVILGA 246 ++A A +G++ L+ V+L + Sbjct: 233 CLIARAKKGEKDLLLVMLNS 252 >gi|38142331|dbj|BAD00968.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|38142291|dbj|BAD00948.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142297|dbj|BAD00951.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|301799864|emb|CBW32439.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae OXC141] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|15900755|ref|NP_345359.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae TIGR4] gi|148993686|ref|ZP_01823133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP9-BS68] gi|149026353|ref|ZP_01836508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP23-BS72] gi|168485819|ref|ZP_02710327.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC1087-00] gi|168490307|ref|ZP_02714506.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP195] gi|168493026|ref|ZP_02717169.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC3059-06] gi|182683787|ref|YP_001835534.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CGSP14] gi|303255291|ref|ZP_07341362.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS455] gi|303260392|ref|ZP_07346361.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP-BS293] gi|303262749|ref|ZP_07348687.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS292] gi|303265038|ref|ZP_07350952.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS397] gi|303267132|ref|ZP_07353001.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS457] gi|303269372|ref|ZP_07355143.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS458] gi|307127577|ref|YP_003879608.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 670-6B] gi|14972344|gb|AAK74999.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae TIGR4] gi|38142277|dbj|BAD00941.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142279|dbj|BAD00942.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142287|dbj|BAD00946.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142305|dbj|BAD00955.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142307|dbj|BAD00956.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142309|dbj|BAD00957.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142325|dbj|BAD00965.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142329|dbj|BAD00967.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142347|dbj|BAD00976.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142349|dbj|BAD00977.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|55167245|dbj|BAD67449.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817134|gb|AAY56863.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817138|gb|AAY56865.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|147927766|gb|EDK78789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP9-BS68] gi|147929315|gb|EDK80314.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP23-BS72] gi|182629121|gb|ACB90069.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CGSP14] gi|183570937|gb|EDT91465.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC1087-00] gi|183571353|gb|EDT91881.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP195] gi|183577020|gb|EDT97548.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC3059-06] gi|221327900|gb|ACM17686.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327904|gb|ACM17688.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327908|gb|ACM17690.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327914|gb|ACM17693.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327916|gb|ACM17694.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327922|gb|ACM17697.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327924|gb|ACM17698.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|301801696|emb|CBW34402.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae INV200] gi|302597760|gb|EFL64835.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS455] gi|302636071|gb|EFL66568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS292] gi|302638427|gb|EFL68893.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP-BS293] gi|302641090|gb|EFL71466.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS458] gi|302643340|gb|EFL73618.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS457] gi|302645398|gb|EFL75631.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS397] gi|306484639|gb|ADM91508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 670-6B] gi|332077286|gb|EGI87748.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA17545] gi|332204028|gb|EGJ18095.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA47368] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|254827320|ref|ZP_05232007.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N3-165] gi|254830810|ref|ZP_05235465.1| hypothetical protein Lmon1_05599 [Listeria monocytogenes 10403S] gi|254899789|ref|ZP_05259713.1| hypothetical protein LmonJ_08246 [Listeria monocytogenes J0161] gi|254913006|ref|ZP_05263018.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818] gi|254937387|ref|ZP_05269084.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900] gi|284800360|ref|YP_003412225.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578] gi|284993545|ref|YP_003415313.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923] gi|258599701|gb|EEW13026.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N3-165] gi|258609993|gb|EEW22601.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900] gi|284055922|gb|ADB66863.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578] gi|284059012|gb|ADB69951.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923] gi|293591008|gb|EFF99342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818] Length = 445 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|168490961|ref|ZP_02715104.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04] gi|221231651|ref|YP_002510803.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC 700669] gi|225854380|ref|YP_002735892.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA] gi|38142283|dbj|BAD00944.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142293|dbj|BAD00949.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142313|dbj|BAD00959.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142321|dbj|BAD00963.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142323|dbj|BAD00964.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142343|dbj|BAD00974.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142355|dbj|BAD00980.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817132|gb|AAY56862.1| penicillin-binding protein 3 [Streptococcus pneumoniae ATCC 700669] gi|183574667|gb|EDT95195.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04] gi|220674111|emb|CAR68630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC 700669] gi|221327902|gb|ACM17687.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327910|gb|ACM17691.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225723264|gb|ACO19117.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|148997049|ref|ZP_01824703.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP11-BS70] gi|168575530|ref|ZP_02721466.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016] gi|169833078|ref|YP_001694325.1| penicillin-binding protein 3 [Streptococcus pneumoniae Hungary19A-6] gi|307067470|ref|YP_003876436.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae AP200] gi|38142285|dbj|BAD00945.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142289|dbj|BAD00947.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142315|dbj|BAD00960.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142317|dbj|BAD00961.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817136|gb|AAY56864.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|147756749|gb|EDK63789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP11-BS70] gi|168995580|gb|ACA36192.1| penicillin-binding protein 3 [Streptococcus pneumoniae Hungary19A-6] gi|183578404|gb|EDT98932.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016] gi|221327906|gb|ACM17689.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327912|gb|ACM17692.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327918|gb|ACM17695.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327920|gb|ACM17696.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|306409007|gb|ADM84434.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae AP200] gi|327390225|gb|EGE88568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA04375] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|229101975|ref|ZP_04232689.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228681558|gb|EEL35721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 428 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++ + H PAS+TK++TA ++ K + + + + + S Y Sbjct: 55 IDAKTGDLLYDKNAHHRAFPASVTKVLTAILLMEHTKPEDQFTFSQLALDQEKSNY---Q 111 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ Sbjct: 112 IEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFV 171 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG- 212 +G+ HYTT D+A+++ ++ +P+ + K + + + + + Sbjct: 172 TPNGLHDPNHYTTPYDIAMITRGVQ-KYPEILQAMNTKRTTVTTSRQTVSIFNKSIYFEN 230 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G KTGFT + +V + +I V++ + R ++ L M Y+ Sbjct: 231 PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMAS----QRPEIYEDLKQMAEYS 282 >gi|89100964|ref|ZP_01173810.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL B-14911] gi|89084335|gb|EAR63490.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL B-14911] Length = 433 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 38/305 (12%) Query: 12 MLSNIFPFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 M+ +FP L+ A + +++ TG V+ D AS+TK+MT Y++ Sbjct: 2 MVIGLFPGLNKASADDALNINADAAIVVEAETGKVLYSKNADKVLGIASMTKIMTEYLLL 61 Query: 67 SFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 +KE K +S K + + SN ++ + + + + SAN +A Sbjct: 62 EAIKEGKVKWDQEYAVSEYVWKVSQDRALSNVPLRRDGKYNIKELYEAMSIYSANGATIA 121 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTARD 169 IAE++ +E FV+ MN+ ++ LGL F+N+ G+ + + +AR Sbjct: 122 IAETIAGSESNFVKMMNDKAEELGLKDYKFVNSSGLNNRDLKGSHQVGGAEDENVMSARA 181 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWAVGTFL----GADGMKTGF 220 A L+ R+ D+P+ + I + K N NW + + + G DG+KTG Sbjct: 182 TAKLAQRLLHDYPEILETTSIPTKNFREGTDDEIKMDNWNWMLPSLVFGYEGVDGLKTGT 241 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 T +G+ +A + I V++ A S S S +++T RK ++Y +F Sbjct: 242 TDFAGYCFTGTATRDGNRYITVVMNAKGEGN----SGSYKSR--FDET-RKMLDYAFSNF 294 Query: 281 YQQNL 285 ++ + Sbjct: 295 SKEEI 299 >gi|149002408|ref|ZP_01827342.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS69] gi|237650527|ref|ZP_04524779.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI 1974] gi|237822666|ref|ZP_04598511.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI 1974M2] gi|147759345|gb|EDK66337.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS69] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|225861235|ref|YP_002742744.1| penicillin-binding protein 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298255726|ref|ZP_06979312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503122|ref|YP_003725062.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus pneumoniae TCH8431/19A] gi|38142303|dbj|BAD00954.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142335|dbj|BAD00970.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142337|dbj|BAD00971.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142341|dbj|BAD00973.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142353|dbj|BAD00979.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225727841|gb|ACO23692.1| penicillin-binding protein 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238717|gb|ADI69848.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus pneumoniae TCH8431/19A] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|315226481|ref|ZP_07868269.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens DSM 10105] gi|315120613|gb|EFT83745.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens DSM 10105] Length = 483 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 32/271 (11%) Query: 5 LVIIAMAMLSNIFPFL-SIAETNK-----LPYYTL-----LDTNTGHVIAENYPDHPWNP 53 ++++ + +L++ FP S AET+ +P+ ++ TG V+ + D P Sbjct: 25 VMVVIVLLLASRFPLAASAAETSSPSTSHMPHVAAAHAYAIEYQTGRVLLDQDGDEPAGI 84 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKL 110 AS+TKL+T Y+ + + + K +T + +S + P + S T+ + + Sbjct: 85 ASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVATNPLTTSADMSRREFTVSDLVNA 144 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHG 162 ++ SAN A+++AE + +E KFV M + G++ NA G+ + G Sbjct: 145 AMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGITDARIYNASGLNNSFLGSNIYPG 204 Query: 163 HYT------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLG 212 + +A+DMAI++W + D+P + + GK TN + + G Sbjct: 205 SSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQASFGGKTISTTNHMLPGEEAAYPG 264 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 DG+KTG T +G A+A+ +IAV+ Sbjct: 265 VDGLKTGTTDEAGACFTATALVKGMRVIAVV 295 >gi|315639990|ref|ZP_07895117.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM 15952] gi|315484252|gb|EFU74721.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM 15952] Length = 423 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 30/269 (11%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YP 90 D++TG + E P + AS TKL++ Y+++ ++ K +T +TIS S + Sbjct: 43 DSDTGKIFYEQDATTPLHIASTTKLLSMYIIYDQIRTGKLSMTDQVTISAETSALSQNWQ 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 SN +G + ++ N ++ ++SAN +A+AE + +E FV M G++ Sbjct: 103 LSNVLLYEGQSYSVKNLIEAGFLESANAAVMALAEKVAGSEATFVDLMRAQLTTWGITDG 162 Query: 151 HFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYF---QIKGL 193 + + G+ + + +A+D+AI++ + DFP+ + Q+ Sbjct: 163 TIVTSTGLNNAFLGDNRYPGSGAEEENQLSAKDLAIVARHLLQDFPEVLQITSQSQLTFA 222 Query: 194 EIKGK--KYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 E G+ + NTN AV T G DG+KTG T +G V + +GD LI V+L Sbjct: 223 EPTGENLELENTNQMLAGMAVATD-GVDGLKTGTTDLAGACFVGTVKRGDTRLITVVLDV 281 Query: 247 LDRNTRNKVSASLLSMGF-YNKTDRKKIN 274 D + + S M + Y++ ++ IN Sbjct: 282 TDATGIARFTESARMMEWVYSQWQQQTIN 310 >gi|189219530|ref|YP_001940171.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum V4] gi|189186388|gb|ACD83573.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum V4] Length = 279 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D P+ PAS TK+MTA + + K + + P + +EYP F G ++ + Sbjct: 60 DSPYYPASTTKVMTALIAYEKTKLEGTVSIQPSDL--GLTEYPVVR--FFPGEKYSVKSL 115 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + L++ S+N+ A+A+A C T FV MN +K+LG + THF N HG+ GH T+A Sbjct: 116 VYALLLPSSNEAAMALARQSCGTVMSFVDEMNKKAKSLGCNHTHFQNPHGISYPGHMTSA 175 Query: 168 RDMAIL--SWRIKTDFPQYMH--YFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTC 222 D+ + ++ D + + +++ L+ K +Y NTN + + G KTG+T Sbjct: 176 NDLRKIFEAFLAVPDLVKIISSPSYELATLDGKPVQYLMNTNKLLDLYQGMTAGKTGWTP 235 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDR 249 S V + + LI VIL + ++ Sbjct: 236 ESRNTFVGMFQRQGKKLIVVILDSPNK 262 >gi|168484754|ref|ZP_02709699.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00] gi|172042076|gb|EDT50122.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|38142295|dbj|BAD00950.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|307709107|ref|ZP_07645566.1| penicillin-binding protein 3 [Streptococcus mitis SK564] gi|307620053|gb|EFN99170.1| penicillin-binding protein 3 [Streptococcus mitis SK564] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSITLSTPVDI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKNFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + +PQ + + Sbjct: 151 IKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N ++ +A+ M + + T Sbjct: 271 QDNNPYSRFTATSSLMDYISST 292 >gi|289167763|ref|YP_003446032.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3 [Streptococcus mitis B6] gi|288907330|emb|CBJ22167.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3 [Streptococcus mitis B6] Length = 413 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKEATQPVEIASITKLLTVYLVYEALENGSITLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + +PQ + + Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|47095562|ref|ZP_00233170.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 1/2a F6854] gi|47015992|gb|EAL06917.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 1/2a F6854] Length = 433 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS+ A + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|323466012|gb|ADX69699.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus H10] Length = 457 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+N+G V+ D AS+TKLMT Y+ + +K ++K T I N + Sbjct: 79 IDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNA 138 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M + K G+ Sbjct: 139 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGI 196 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + DFP+ + ++ L Sbjct: 197 KDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHL 256 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K + K N NW + DG+KTG T A+G + + LI V+ Sbjct: 257 DFKDQGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLITVV 316 Query: 244 LGALDRN 250 +GA ++ Sbjct: 317 MGARHKD 323 >gi|297621737|ref|YP_003709874.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila WSU 86-1044] gi|297377038|gb|ADI38868.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila WSU 86-1044] Length = 426 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 112/253 (44%), Gaps = 44/253 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK-KAMLTTPITISKNASEYPP 91 L++ +TG ++ E PASLTK+ TA ++K MLT + SE Sbjct: 32 LMNADTGAILYEKNGKKEHFPASLTKIATAIYTLQLREQKLDKMLTAEHEAIASVSEEEM 91 Query: 92 SNSTF----------------KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S + KKG ++L + L ++V S D + IA + T F+ Sbjct: 92 VRSNYSLPAYWLTRGTSHIGIKKGEELSLRDLLYGMMVASGGDASNMIALYMGGTIPVFM 151 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS------------------WRI 177 + +N K LG ++T+ MN HG+ H +TA DMA+L+ R Sbjct: 152 EELNLYLKELGCTSTYLMNPHGLHHPRHVSTAYDMAVLTREALKNSTFREIVKTVRCQRP 211 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +T+ + Q L KGK Y + A G+KTG+T + N+VA+A GD+ Sbjct: 212 ETNKQKATTLIQTNRLLRKGKYY---------YSKAIGVKTGYTSQAKNNLVAAAKDGDR 262 Query: 238 SLIAVILGALDRN 250 +LIAV + DR Sbjct: 263 TLIAVFMHCDDRE 275 >gi|296269600|ref|YP_003652232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora bispora DSM 43833] gi|296092387|gb|ADG88339.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora bispora DSM 43833] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 11/221 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG + ASLTK+MTAY+V K ++ P + + A+ + Sbjct: 64 LLDAATGEELYGKAGTERMPVASLTKVMTAYLVLRQAKLTDTVVIDPADV-RYANAGGGT 122 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +T+++ L L++ S D A A+A + F + MN+T++ LGL+ T + Sbjct: 123 TAGLRAGDRLTVEDLLYALMLPSGADAAHALARVYGPGVEAFTKRMNDTARELGLTDTTY 182 Query: 153 MNAHGV-VQHGHYT-TARDMAILSW------RIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 +NA G+ G T TARD A L+ R+K +H + + + NTN Sbjct: 183 LNADGLPTPEGQNTSTARDQARLAEIALRDPRLKKITSTQVHTVA-RTADHAAYTWRNTN 241 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +G G G+KTGFT A+GF + +A + + ++ VILG Sbjct: 242 RLLGAP-GVIGVKTGFTLAAGFCLAFAAERDGRLVVGVILG 281 >gi|153933846|ref|YP_001384111.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|153934860|ref|YP_001387651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. Hall] gi|152929890|gb|ABS35390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|152930774|gb|ABS36273.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. Hall] Length = 378 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 23 AETNKLPYYTL-----LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++ NK PY +D +TG V+ E + AS TK+MT V + L Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANGIVPIASTTKIMTTLVALKY-----GDLD 86 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 I IS+NA + S ++KG + L L L+++S ND A+AIAE + + + F + Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195 MN + +GL +HF+ HG+ + HY+TA D+A+ + K F + + +K E Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206 Query: 196 K-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + ADG+KTG+T +G +V S+ +I V+L R Sbjct: 207 NFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPR 261 >gi|293553827|ref|ZP_06674442.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium E1039] gi|291602033|gb|EFF32270.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium E1039] Length = 435 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|254520208|ref|ZP_05132264.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA] gi|226913957|gb|EEH99158.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA] Length = 418 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 39/322 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG VI + PAS TK+MTA VV K LT +TI++ + S Sbjct: 34 LMDGRTGKVIYSKNEHTQYEPASTTKVMTALVVLENTK-----LTDKVTINEKPTLVDGS 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG T++ + L+++S ND A A+AE + + ++F + MN +K LG T F Sbjct: 89 AIGIAKGEVYTVEELMLGLLLESGNDCAEALAEHVSGSNEEFAKLMNAKAKELGALDTTF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ + GH TTA D+A++ Y + ++ + + KY N ++ G+ Sbjct: 149 KNPSGLHEDGHVTTAYDLALIMR------AAYQNEDLVRIAQTESHKYVNHPFSDGSEKW 202 Query: 213 ADGM------------------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 A K G+T + A+A++ +Q L+ +L A D++ Sbjct: 203 ATNRNQLFNEYTPYYYQYAYIGKNGYTPEANHTYTATAMKDEQFLVVALLNATDKDNFYT 262 Query: 255 VSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 L GF N K IN + D Y+ N +P ++++ Y T+ K Sbjct: 263 NIGPLFDYGFDNFETIKLINKNDVLDTYKINDDISIPLLAKDDL--------YYTKSK-T 313 Query: 314 KDKESHFIDFEKITLLKNKITK 335 ++ S+ +D++K + K I K Sbjct: 314 EEIPSYTVDYQKKDISKKNINK 335 >gi|38142345|dbj|BAD00975.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSITLSTPVDI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDRMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+AI++ + +PQ + + Sbjct: 151 IKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFDGITITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|255029224|ref|ZP_05301175.1| hypothetical protein LmonL_09016 [Listeria monocytogenes LO28] Length = 432 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 32 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDT 91 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 92 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 151 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 152 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 211 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 212 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 270 >gi|229084363|ref|ZP_04216643.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228698903|gb|EEL51608.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 416 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 17/196 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG V+ + + PAS+TK++TA ++ +K + + + + S Y Sbjct: 44 IDAKTGDVLYDKNANQHAFPASMTKVLTAILLMEHVKPGEQFTFSQPALDQEKSNY---Q 100 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+ G T+ + AL +L+V SAND++ A+ E + + + F + MN +K LG +HF+ Sbjct: 101 IEFQVGETIDRNTALTILMVLSANDVSYAVGERIGGSIENFAKMMNEKAKQLGAKDSHFI 160 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 +G+ HYTTA DMA+++ ++ +P+ + + + K + V F A Sbjct: 161 TPNGLHDPNHYTTAYDMAMITRGVQ-KYPEIL-----QAMNTKRTTVTTSRQTVSIFNKA 214 Query: 214 D--------GMKTGFT 221 + G KTGFT Sbjct: 215 NYFENPYSIGGKTGFT 230 >gi|332073203|gb|EGI83682.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA17570] Length = 413 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 29/268 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 G T +G + V + ++ +I V+L A Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNA 268 >gi|257883085|ref|ZP_05662738.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,502] gi|257818743|gb|EEV46071.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,502] Length = 435 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|294620209|ref|ZP_06699543.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679] gi|314940169|ref|ZP_07847347.1| beta-lactamase [Enterococcus faecium TX0133a04] gi|314942414|ref|ZP_07849257.1| beta-lactamase [Enterococcus faecium TX0133C] gi|314952310|ref|ZP_07855321.1| beta-lactamase [Enterococcus faecium TX0133A] gi|314994247|ref|ZP_07859550.1| beta-lactamase [Enterococcus faecium TX0133B] gi|314997162|ref|ZP_07862148.1| beta-lactamase [Enterococcus faecium TX0133a01] gi|291593562|gb|EFF25102.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679] gi|313588736|gb|EFR67581.1| beta-lactamase [Enterococcus faecium TX0133a01] gi|313591334|gb|EFR70179.1| beta-lactamase [Enterococcus faecium TX0133B] gi|313595569|gb|EFR74414.1| beta-lactamase [Enterococcus faecium TX0133A] gi|313598814|gb|EFR77659.1| beta-lactamase [Enterococcus faecium TX0133C] gi|313640608|gb|EFS05188.1| beta-lactamase [Enterococcus faecium TX0133a04] Length = 435 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|254830752|ref|ZP_05235407.1| hypothetical protein Lmon1_05309 [Listeria monocytogenes 10403S] Length = 272 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLNLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K G+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKSGMSSKTTFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + KG K +TN +G+ G D Sbjct: 160 LDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|160938825|ref|ZP_02086176.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC BAA-613] gi|158437788|gb|EDP15548.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC BAA-613] Length = 325 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 22/214 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MTA V K L + ++ +A +E + + G T+TL+ L Sbjct: 101 PASITKVMTALVAI-----KNGDLNARVVVTDDAVITESGATLCGIEPGDTLTLEQLLYG 155 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AIA + + KF MN + +LG + THF+N HG+ HYTTA D+ Sbjct: 156 LMLPSGNDAGAAIAVHIAGSIDKFADMMNQEAASLGATGTHFVNPHGLNDPDHYTTAYDL 215 Query: 171 AIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW------AVGTFLGADGM 216 ++ +R Y + K + K + NW L G Sbjct: 216 YLIFNEALKYPVFRQIVGTTSYTANYHDKDSQAVTKTWKGGNWFMTRERETPEGLTVFGG 275 Query: 217 KTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 KTG T A+G+ I+A+ Q D+ I+V+L + R Sbjct: 276 KTGTTNAAGYCLIMATRDQNDKEYISVVLKSDSR 309 >gi|258614356|ref|ZP_05712126.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium DO] gi|261209455|ref|ZP_05923818.1| predicted protein [Enterococcus faecium TC 6] gi|289567521|ref|ZP_06447868.1| predicted protein [Enterococcus faecium D344SRF] gi|294616358|ref|ZP_06696151.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636] gi|260076583|gb|EEW64347.1| predicted protein [Enterococcus faecium TC 6] gi|289160683|gb|EFD08636.1| predicted protein [Enterococcus faecium D344SRF] gi|291590872|gb|EFF22588.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636] Length = 435 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|152975589|ref|YP_001375106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024341|gb|ABS22111.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 337 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ + P+ L+KLMT Y++ + + I N+ + Sbjct: 40 LIDADSGEIVYKKNETSPFPSGDLSKLMTEYILLERIHNGTLKWEDEVIIKDNSFHIGAN 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-TH 151 + S +T+ + + + N A+A+AE + E+ F++ MN ++ LGLS T+ Sbjct: 100 DIGTTVKSDITIRDLFHAVALTGNNRAALALAEHISTNEENFIKLMNEKARQLGLSKDTY 159 Query: 152 FMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWA 206 F+N GV + TA D + L+ ++ D+P + + + K NTN Sbjct: 160 FINVTGVSNKQEQFSKITALDASKLARQLLYDYPTILKSSSMTSYQFIFKDIHVFNTNRM 219 Query: 207 VGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + DG++T F+ +G++ V +A + D+ LI+V+LGA N+ S L Sbjct: 220 LYSLDKNVKLKSVDGLQTSFSPTTGYSFVGTAKEKDRRLISVVLGAKGENSSFIESKKLF 279 Query: 261 SMGFY 265 + GF+ Sbjct: 280 NYGFH 284 >gi|291536181|emb|CBL09293.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] gi|291538955|emb|CBL12066.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 327 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 24/232 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY+ + + L+ +TIS+NA+ +S G + +D+ L Sbjct: 102 PASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCGLHAGDVIRMDDLLYG 157 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++++S ND A++IAES+ + ++F MN + LG + +HF+N +G+ HYT+ D+ Sbjct: 158 MMLRSGNDAAISIAESISGSVEEFAALMNKEAAALGATQSHFVNPNGLPDENHYTSVYDL 217 Query: 171 AILSWRIKTD---FPQ------YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGM---- 216 ++ +R F Q Y +Q I+ + NTN + G DG Sbjct: 218 YLI-FRAALQNETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQYLSGHAKSPDGFTVIG 276 Query: 217 -KTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG T A+G+ +V ++ + Q +I+++L A ++ + +LS GF N Sbjct: 277 GKTGTTGAAGYCLVLYSMNEQSQPIISIVLKADGKSNLYLLMNEMLS-GFAN 327 >gi|167760670|ref|ZP_02432797.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704] gi|167661557|gb|EDS05687.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704] Length = 324 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 1/153 (0%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 PY L D ++G+ +AE+ PASLTK+MTA + ++ + ++T P Sbjct: 51 PYSILTDLDSGNALAEHNAQDRIYPASLTKIMTAILAIENTQDMEEVITLPTDFFSKLYI 110 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + F+ G + L + L +++ S + +A E + +E+ FV+ MN + LGL Sbjct: 111 ENASMAGFQPGEQVRLKDLLYGMLLPSGAECCLAFCERIAGSEEAFVRLMNKKAGELGLE 170 Query: 149 ATHFMNAHGVVQHGHYTTARDM-AILSWRIKTD 180 THF N+ G+ HY+T +D+ A+L + +K + Sbjct: 171 NTHFCNSTGLHDSEHYSTVKDISALLQYALKNE 203 >gi|118589859|ref|ZP_01547263.1| penicillin binding protein [Stappia aggregata IAM 12614] gi|118437356|gb|EAV43993.1| penicillin binding protein [Stappia aggregata IAM 12614] Length = 384 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 18/252 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FLV+ ++A + AET K P L + +G ++ PD P++P +L K+MT Sbjct: 9 FLVVASIAGPAQA------AETIVTKAPMAFLYEPASGTILFAKEPDRPFSPGALVKVMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM--------TLDNALKLLIV 113 A VF LK+ L +S++A + + +G+TM +++ LK L+V Sbjct: 63 AATVFKSLKDGDLKLDQTCKVSEHA--WRTGGAPSGRGATMFAAIKSDIPVEDLLKGLLV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 + ND A+ +AE L +E+ F M + +G+ + F N+ G + TT RD A L Sbjct: 121 HNGNDAAIVLAECLDGSEEAFAVRMTEFAHAIGMKNSRFGNSTGYPEVPSQTTVRDQARL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I F I N N +G DG+ G +G++ + S Sbjct: 181 AEYILESHADLYPMFAIPEFTWNKIFQRNKNPLLGEIRNLDGLGGGNDAEAGYSGLGSVD 240 Query: 234 QGDQSLIAVILG 245 + + +IA + G Sbjct: 241 RNGRRVIAAVAG 252 >gi|225027655|ref|ZP_03716847.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353] gi|224954969|gb|EEG36178.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353] Length = 321 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 12/149 (8%) Query: 30 YYTLLDTNTGHVIAENYPDHPWN---PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-- 84 Y LL ++ + + E+Y H ++ PAS+TK+MTA L + + IT+ Sbjct: 73 YADLLINDSTNEVLESY--HCFDRLYPASITKVMTA-----LLTLEHGNMDDEITLKHDI 125 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N +E ST KG T+T+ +++KSAND AV +AE + +E KF+ MN +K Sbjct: 126 NLTENGAVISTLTKGDTVTVGQVFHTMLIKSANDCAVILAEYVAGSESKFIDMMNAKAKE 185 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL 173 LG + THF+N +G+ + HYTTA D+ ++ Sbjct: 186 LGATHTHFVNPNGLHDNNHYTTAYDLYLI 214 >gi|229916043|ref|YP_002884689.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] gi|229467472|gb|ACQ69244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] Length = 337 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKL 110 PAS TKLMTA + + + ITI ++ + P + + G T+T+ AL Sbjct: 111 PASTTKLMTALLAYEKASAANELDQPIITIQQSTLDIPWDSHIAHLAIGDTLTVRQALYA 170 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +++S ND A ++AE + FVQ MN+ +K LGL+ T+F+NAHG HYTTA DM Sbjct: 171 TLLESGNDAANSLAEYTSGSTNAFVQLMNDRAKVLGLTGTNFVNAHGYSDPNHYTTANDM 230 Query: 171 AILSWRIKTDFPQYMHYFQIKG 192 A +I F Y +I G Sbjct: 231 A----KIAFAFSTYPELIEIAG 248 >gi|16079376|ref|NP_390200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310236|ref|ZP_03592083.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. 168] gi|221314560|ref|ZP_03596365.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319482|ref|ZP_03600776.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. JH642] gi|221323758|ref|ZP_03605052.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. SMY] gi|321311791|ref|YP_004204078.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|461914|sp|P35150|DACB_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacB; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5*; Short=PBP-5*; Flags: Precursor gi|410134|gb|AAA67490.1| penicillin-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|2634754|emb|CAB14251.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. 168] gi|320018065|gb|ADV93051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 382 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 8/215 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA + K + +T+S NA S Sbjct: 38 IIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + L + + L+++S ND AVAIAE + + FV MN ++ LG+ T F Sbjct: 93 AIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRF 152 Query: 153 MNAHGVVQH-GHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 N HG+ H HY+TA DMAIL+ + +K Q + +I E + N N + Sbjct: 153 QNPHGLDDHENHYSTAYDMAILTKYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTML 212 Query: 211 LG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G KTG+T + +V++A + LIAV + Sbjct: 213 YPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTI 247 >gi|260219749|emb|CBA26593.1| hypothetical protein Csp_H39370 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 364 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 66/113 (58%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y LLD + ++A D P PASLTKLMTAY+VF L+ KK L +S+ A + P Sbjct: 20 YLLLDVTSNQILASKDMDMPVEPASLTKLMTAYLVFDALRSKKIDLKQTFPVSERAWKMP 79 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S + +++ +K +IV+S ND +A+AE + + ++FVQ MN+ +K Sbjct: 80 GSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGSLERFVQMMNDQAK 132 >gi|302670839|ref|YP_003830799.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio proteoclasticus B316] gi|302395312|gb|ADL34217.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio proteoclasticus B316] Length = 329 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 6/139 (4%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEYPPSNS 94 TN + A+N D PASLTK+MTAYV + ++ ++ + + ++++ ++ Sbjct: 89 TNRETLFAQNVNDRVM-PASLTKVMTAYVALKYGSLEQVLVAGSDVYVNESGAQKIG--- 144 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 K+G MTLD AL +L++ SAND+A IA ++ + ++FV MN + +G + THF N Sbjct: 145 -LKEGDRMTLDQALHILLIYSANDVANLIASNISGSIEEFVNTMNAEAYAIGATKTHFEN 203 Query: 155 AHGVVQHGHYTTARDMAIL 173 +G+ HY TA DM ++ Sbjct: 204 PNGLTSDEHYVTAYDMYLI 222 >gi|291484748|dbj|BAI85823.1| penicillin-binding protein 5* [Bacillus subtilis subsp. natto BEST195] Length = 382 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 8/215 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA + K + +T+S NA S Sbjct: 38 IIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + L + + L+++S ND AVAIAE + + FV MN ++ LG+ T F Sbjct: 93 AIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRF 152 Query: 153 MNAHGVVQH-GHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 N HG+ H HY+TA DMAIL+ + +K Q + +I E + N N + Sbjct: 153 QNPHGLDDHENHYSTAYDMAILTKYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTML 212 Query: 211 LG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G KTG+T + +V++A + LIAV + Sbjct: 213 YPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTI 247 >gi|38142281|dbj|BAD00943.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142299|dbj|BAD00952.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142351|dbj|BAD00978.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|328464600|gb|EGF35965.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus MTCC 5463] Length = 431 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+N+G V+ D AS+TKLMT Y+ + +K ++K T I N + Sbjct: 53 IDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNA 112 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M + K G+ Sbjct: 113 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGI 170 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + DFP+ + ++ L Sbjct: 171 KDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHL 230 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K + K N NW + DG+KTG T A+G + + LI V+ Sbjct: 231 DFKDQGHTTKMANFNWMLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVV 290 Query: 244 LGALDRN 250 +GA ++ Sbjct: 291 MGARHKD 297 >gi|322388019|ref|ZP_08061626.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis ATCC 700779] gi|321141292|gb|EFX36790.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis ATCC 700779] Length = 413 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 29/243 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ N+G ++ E P AS++KL+T Y+V+ L++ K L+TP+ I S+YP Sbjct: 35 VEANSGKILYEKDATQPVEIASISKLLTVYLVYEALEQGKITLSTPVEI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKVAGSEKDFVDMMKAKLLEWG 150 Query: 147 LSATHFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + G + +A D+A+++ + +PQ + + Sbjct: 151 IQDATLVNTTGLNNETLGNNIYPGSKKDDENKMSAYDVAVVARNLILKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G +TN + G DG+KTG T +G + V + ++ +I V+L A + Sbjct: 211 STFAGMTIHSTNSMLDGMPAYRGGIDGLKTGNTDKAGASFVGTTVEKGMRIITVVLNADN 270 Query: 249 RNT 251 ++T Sbjct: 271 QDT 273 >gi|257879976|ref|ZP_05659629.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,230,933] gi|257893087|ref|ZP_05672740.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,408] gi|257814204|gb|EEV42962.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,230,933] gi|257829466|gb|EEV56073.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,408] Length = 435 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWGDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|260103243|ref|ZP_05753480.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus DSM 20075] gi|111610195|gb|ABH11586.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus CNRZ32] gi|260082956|gb|EEW67076.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus DSM 20075] Length = 431 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+N+G V+ D AS+TKLMT Y+ + +K ++K T I N + Sbjct: 53 IDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNA 112 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M + K G+ Sbjct: 113 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGI 170 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + DFP+ + ++ L Sbjct: 171 KDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHL 230 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K + K N NW + DG+KTG T A+G + + LI V+ Sbjct: 231 DFKDQGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLITVV 290 Query: 244 LGALDRN 250 +GA ++ Sbjct: 291 MGARHKD 297 >gi|229082256|ref|ZP_04214719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228700688|gb|EEL53211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] Length = 279 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D NTG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|148988291|ref|ZP_01819738.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP6-BS73] gi|147925972|gb|EDK77046.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP6-BS73] Length = 406 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 28 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 83 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 84 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 143 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 144 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 203 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 204 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 263 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 264 QDNNPYARFTATSSLMDYISST 285 >gi|193212918|ref|YP_001998871.1| Serine-type D-ala-D-ala carboxypeptidase [Chlorobaculum parvum NCIB 8327] gi|193086395|gb|ACF11671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobaculum parvum NCIB 8327] Length = 411 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 23/229 (10%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D +PASLTK+MT + + L +TI A++ P+ + FK G + L + Sbjct: 70 DQRISPASLTKIMTCMLAI-----ESGRLDDVVTIPPEATKVEPTRAGFKPGDRIRLRDL 124 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHY 164 + +V S+ND A AIA L + FV MN ++ LG++ T F N G + G++ Sbjct: 125 VAAAMVNSSNDAAFAIAIHLGGSLNGFVSKMNARARALGMTHTRFTNPAGYDRGSYAGNH 184 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYP--NTNWAVGTFLGADG 215 +TARD+ ++ +Y + +I L+ GK+Y + N + + + G Sbjct: 185 STARDL----MKLTEHAIRYSEFNKIAKLDRVVFNELNTGKRYSLRSHNKLLDRYPYSVG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +KTG+T +G ++A A+ + ++ ++L A + R ++++S+ GF Sbjct: 241 IKTGYTSKAGPCLIARAVCEGKDMLVIMLHA--KTDRWELASSMFDQGF 287 >gi|161507933|ref|YP_001577897.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC 4571] gi|160348922|gb|ABX27596.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC 4571] Length = 431 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+N+G V+ D AS+TKLMT Y+ + +K ++K T I N + Sbjct: 53 IDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNA 112 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M + K G+ Sbjct: 113 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGI 170 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + DFP+ + ++ L Sbjct: 171 KDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHL 230 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K + K N NW + DG+KTG T A+G + + LI V+ Sbjct: 231 DFKDQGHTTKMANFNWMLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVV 290 Query: 244 LGALDRN 250 +GA ++ Sbjct: 291 MGARHKD 297 >gi|302547465|ref|ZP_07299807.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces hygroscopicus ATCC 53653] gi|302465083|gb|EFL28176.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces himastatinicus ATCC 53653] Length = 311 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 23/237 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 LLDT +G + D AS TK+M A VV L+ K L +T+ ++ +Y Sbjct: 48 LLDTGSGEELMAKGADTKRPIASTTKIMAALVV---LETKNVDLDKQVTVKEDYRDYVTK 104 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES------LCKTEKKFVQHMNNTS 142 S + + G +T++ L +++ S D A+A+A++ + + K FV MN + Sbjct: 105 SEASTADLQTGDKLTVNQLLYGMMLPSGCDAAMALADTFGTGDTVAERTKSFVSKMNAKA 164 Query: 143 KNLGLSATHFMNAHGV-VQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIK--GLEIKG 197 ++LGL+ TH+ + GV G+Y+T R++A L+ R + F + + K G Sbjct: 165 EDLGLTNTHYDSFDGVSASSGNYSTPREVAELTQRAMKNATFQKVVKSVSTKQEAPAANG 224 Query: 198 K----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDR 249 + + NTN +G++ GA G+KTG T +G +V +A + ++++ VIL A DR Sbjct: 225 RTRYYSWDNTNRILGSYKGAVGVKTGTTTPAGPCLVFAAKRDGRTVVGVILNDAADR 281 >gi|148984605|ref|ZP_01817873.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP3-BS71] gi|147922996|gb|EDK74111.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP3-BS71] Length = 406 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 28 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 83 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 84 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 143 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 144 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 203 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 204 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 263 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 264 QDNNPYARFTATSSLMDYISST 285 >gi|269925806|ref|YP_003322429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum ATCC BAA-798] gi|269789466|gb|ACZ41607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum ATCC BAA-798] Length = 334 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 24/234 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ P+ AS K+MTA + + + + P + ++ Y Sbjct: 61 VMDRRTGKILWAYKPNKKLAMASTAKMMTAILALQYADPNEVIKVYPRDLVGGSTAY--- 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE---------KKFVQHMNNTSK 143 + G +TL + LK ++ S ND AV IA+ + + + FV MN + Sbjct: 118 ---LRAGEKLTLTDLLKAALIPSGNDAAVTIADYVGRKYLGGVGDNGIQVFVDEMNAKAH 174 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKK- 199 LGL T F +G G Y+TA D+A L R D P + ++ + + G K Sbjct: 175 ELGLDHTVFRTPNGFDAPGQYSTALDLAKLG-RELLDNPLLSSIVGTYRTRVIGHLGGKP 233 Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 +TN + + G G+KTG T A+G N+V+ +G+ LIAV+LG+ DR Sbjct: 234 VYHTLVSTNDLLPIYPGMQGIKTGTTPAAGENLVSYVKRGNIELIAVVLGSQDR 287 >gi|166031716|ref|ZP_02234545.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC 27755] gi|166028169|gb|EDR46926.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC 27755] Length = 430 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 40/277 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ + AS TK+MT + + + + +T S A+ P Sbjct: 59 LMDADSGRVLFGKEEEAIRPMASTTKIMTCIIALEHMTDNEI-----VTASAYAASQPKV 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G L + L L+++S ND AV +AE + + + FV+ MN ++ LGL+ THF Sbjct: 114 HLGVREGQQFYLRDILFSLMLESHNDSAVMVAEEIAGSVEAFVKMMNEKAEELGLTKTHF 173 Query: 153 MNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKG-KKYP 201 + +G+ H TTA ++A + D P+ + I G ++KG Y Sbjct: 174 VTPNGLDGEDEGGVHATTAMELAKIMKYCIMDSPEKEMFLDITGTKEYHFRDLKGTSSYT 233 Query: 202 NTNW-AVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 TN A T + GA KTGFT +G+ V GAL R+ R + A L Sbjct: 234 CTNHNAFLTMMDGAISGKTGFTADAGYCYV---------------GALRRDERTFIVA-L 277 Query: 260 LSMGF-----YNKTDRKKI-NYIIKDFYQQNLSNEVP 290 L+ G+ Y +D KK+ Y + ++ +N+ E+P Sbjct: 278 LACGWPNHKGYKWSDTKKLMEYGLANYEYRNVWQELP 314 >gi|307706421|ref|ZP_07643231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321] gi|307618208|gb|EFN97365.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321] Length = 413 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV----VQHGHYTTAR----------DMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + Y +R D+AI++ + +PQ + + Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSRKDDENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|332076153|gb|EGI86619.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA41301] Length = 406 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 28 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 83 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 84 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 143 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 144 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 203 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 204 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 263 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 264 QDNNPYARFTATSSLMDYISST 285 >gi|111657944|ref|ZP_01408652.1| hypothetical protein SpneT_02000863 [Streptococcus pneumoniae TIGR4] gi|149007183|ref|ZP_01830847.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP18-BS74] gi|147761221|gb|EDK68188.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP18-BS74] Length = 406 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 28 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 83 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 84 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 143 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 144 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 203 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 204 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 263 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 264 QDNNPYARFTATSSLMDYISST 285 >gi|322376423|ref|ZP_08050916.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334] gi|321282230|gb|EFX59237.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334] Length = 413 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYRL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAHRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|313906127|ref|ZP_07839476.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium cellulosolvens 6] gi|313469014|gb|EFR64367.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium cellulosolvens 6] Length = 544 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 19/210 (9%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT V + + +T A + + F G ++ ++ L ++ Sbjct: 313 PASMTKIMTTLVAIEHITNLEDTVTFTGGEYDRAYTEGATTANFMAGDVVSYNDVLYGIM 372 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-- 170 + S D AIA++L +E FV MN ++ LG++ THF N G+ HYTT DM Sbjct: 373 LPSGADACYAIADALGGSEAGFVNMMNEKAQQLGMNDTHFTNCTGLTNEDHYTTCADMIK 432 Query: 171 ----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---------GMK 217 A+ + KT F ++H GL G + +T + T+LG+ G K Sbjct: 433 LLQAALQNETFKTVFCTHVHTTGPLGLNPDGLQLSSTAF---TYLGSPLLQNGTEITGTK 489 Query: 218 TGFTCASGFNIVASAIQGDQS-LIAVILGA 246 TGFT +G + + A GD + I V GA Sbjct: 490 TGFTDEAGHCLASCAKAGDGTEYILVTAGA 519 >gi|206970320|ref|ZP_03231273.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|206734897|gb|EDZ52066.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] Length = 279 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D NTG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|291536086|emb|CBL09198.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 414 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 27/309 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ E AS TK++T + + L + +T+S A+ P Sbjct: 53 LMDADSGRILYEKNGHQAMANASTTKILTCIIAL-----ENCDLDSEVTVSTLAASQPKV 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G L + L L+++S ND AVAIAE + T F + MN+ ++ +G ++F Sbjct: 108 HLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYF 167 Query: 153 MNAHGVV---QHG-HYTTARDMA-ILSWRIKT-----DFPQYMHYFQIKGLEIKGKK--- 199 + +G+ ++G H+TTA D++ I+ + IKT F Q + +I GK Sbjct: 168 ITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYT 227 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GA KTGFT +G+ V + + D++ I +L N + A Sbjct: 228 CCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTYKWADT 287 Query: 260 LSMGFYNKTDRKKI--NYIIKDFYQ----QNLSNEVPNISEEVCTTQKEI--INYNTQMK 311 + Y + +KI + I D + Q + + I EEV TT+ E+ + N ++ Sbjct: 288 KKLMQYGISRFRKISLDEIELDAGECAPVQVVDGQGTKIGEEV-TTELEVAPVKENVELL 346 Query: 312 EAKDKESHF 320 KD+E H Sbjct: 347 IEKDQEVHI 355 >gi|269123185|ref|YP_003305762.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptobacillus moniliformis DSM 12112] gi|268314511|gb|ACZ00885.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptobacillus moniliformis DSM 12112] Length = 281 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 37/282 (13%) Query: 8 IAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVI--------AENYPDHPWNP----- 53 I + +LS IF F ++++E + Y +L N H + EN + +N Sbjct: 4 ILLFILSAIFSFSINLSENLENEMYAIL--NYDHRLYKSMYIGDDENNKYYSYNETSTRP 61 Query: 54 -ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTKLMTA ++F ++E K L T + +SK AS+ P K+ T++ L LL+ Sbjct: 62 LASLTKLMTALIIFDDIQEGKYELNTEVVVSKEASKVPYG-VVIKENRIYTIEELLHLLL 120 Query: 113 VKSANDIA--VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-----QHGHYT 165 + S+N A +A+ S + +FV MN +K+LGL + F HG+ + Sbjct: 121 INSSNSSAYQLALFSSFGNVD-EFVDKMNKKAKSLGLRSLRFRTPHGLPPVDTNKAMDIG 179 Query: 166 TARDMAILSWRIKT-----DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 ARD+ +L+ + + Y G++IK NT + L G+KTGF Sbjct: 180 NARDIYLLALNALNNEKLIEISKKYSYETSDGIKIKS---TNTLVQLDEVL---GLKTGF 233 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G+NIV GD+ +I VILGA ++R K+ L + Sbjct: 234 HRRAGYNIVYLIDNGDKKIIQVILGANTISSREKLGLKTLEL 275 >gi|126649987|ref|ZP_01722220.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905] gi|126593159|gb|EAZ87121.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905] Length = 289 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 18/240 (7%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ N V+ + + PASLTK+MT V + + + I + E Sbjct: 40 PNAILVNLNENKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPNLQEEIVLGNNIFNHLYE 99 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + F +TL++ L ++ S + ++ +AE + +E+KFV MN ++ LG+ Sbjct: 100 ANASLAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQLGME 159 Query: 149 ATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQY--MHYFQIK-------GLEIKG 197 THFMN G+ HYTT +DM+ +L + + D F Q + IK G+ Sbjct: 160 NTHFMNTTGLHHTEHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGITFTN 219 Query: 198 KKYPN-TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 K + N T A+ G LG KTG+T +G + + A Q I V +GA + N+R + Sbjct: 220 KMFQNMTTRALPGGEILGG---KTGYTDDAGLCLASLATINGQEYILVTVGA-EGNSRTE 275 >gi|119357228|ref|YP_911872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium phaeobacteroides DSM 266] gi|119354577|gb|ABL65448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium phaeobacteroides DSM 266] Length = 291 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 23/229 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L +T + V + PASLTK++T+ + + L + I+K A+ Sbjct: 49 YILKETGSSKVFMVKDSEKTIQPASLTKILTSIIAL-----ESGQLDDEVVITKEATMVE 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS + FK G + L + +K +V S+ND A AI L + +FV+ MN ++++G+ + Sbjct: 104 PSKAGFKPGERILLRDLVKAAMVSSSNDAAFAIGIHLEGSVPRFVRKMNRKARDIGMRHS 163 Query: 151 HFMNAHGV---VQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLE--IKGKKYPNT- 203 F N G V G+ +TA D+ L+ + I+ + +I LE + ++ N Sbjct: 164 VFTNPAGFDKRVYAGNVSTAEDLVKLTEYAIRNR-----KFNEIASLESVLVTERSSNKI 218 Query: 204 ------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N +G + A G+KTGFT ++G ++A A + ++ ++ V+L A Sbjct: 219 YLLKTHNKLLGKYPYAVGIKTGFTRSAGKCLIARAKKENKDMLLVLLDA 267 >gi|324328943|gb|ADY24203.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 279 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ MA L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMMATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|307708560|ref|ZP_07645025.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC 12261] gi|307615476|gb|EFN94684.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC 12261] Length = 413 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYKL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 91 TTNSEASNVPMEARNYTVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 210 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 211 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 270 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 271 QDNNPYARFTATSSLMDYISST 292 >gi|229181304|ref|ZP_04308634.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228602197|gb|EEK59688.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] Length = 279 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D NTG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDEE-----ITVTENAIKTESQSKKIKLRPGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|240146057|ref|ZP_04744658.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257201873|gb|EEV00158.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 414 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 27/309 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ E AS TK++T + + L + +T+S A+ P Sbjct: 53 LMDADSGRILYEKNGHQAMANASTTKILTCIIAL-----ENCDLDSEVTVSTLAASQPKV 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G L + L L+++S ND AVAIAE + T F + MN+ ++ +G ++F Sbjct: 108 HLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYF 167 Query: 153 MNAHGVV---QHG-HYTTARDMA-ILSWRIKT-----DFPQYMHYFQIKGLEIKGKK--- 199 + +G+ ++G H+TTA D++ I+ + IKT F Q + +I GK Sbjct: 168 ITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYT 227 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GA KTGFT +G+ V + + D++ I +L N + A Sbjct: 228 CCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTYKWADT 287 Query: 260 LSMGFYNKTDRKKI--NYIIKDFYQ----QNLSNEVPNISEEVCTTQKEI--INYNTQMK 311 + Y + +KI + I D + Q + + I EEV TT+ E+ + N ++ Sbjct: 288 KKLMQYGISRFRKISLDEIELDAGEYAPVQVVDGQGTKIGEEV-TTELEVAPVKENVELL 346 Query: 312 EAKDKESHF 320 KD+E H Sbjct: 347 IEKDQEVHI 355 >gi|313635871|gb|EFS01844.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL S4-171] Length = 445 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+F MN ++ L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFXAMMNKKAEELKLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P+ + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLIDDYPEVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|300214001|gb|ADJ78417.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius CECT 5713] Length = 385 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 126/262 (48%), Gaps = 29/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I + AS++KL+TAY++ + + + T +T + A+E SN Sbjct: 14 VDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVTPT--ATEVDISN 71 Query: 94 ST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +T ++G + T+ + ++V SAN + I ++ T+ KF+ M T+K+LG+ Sbjct: 72 NTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGI 131 Query: 148 SATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 + +A+G+ + + RDMAI+S ++ ++P+ + ++ + Sbjct: 132 TDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIEEYPEILETTKLTKI 191 Query: 194 EIKGK----KYPNTNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + NTN + + L DG+KTG + A+G+ ++ + +I VI GA Sbjct: 192 DFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAK 251 Query: 248 DRNTRNKVSASLLSMGFYNKTD 269 D + R + +LL+ YN D Sbjct: 252 DNDARFDQTKNLLNY-IYNNYD 272 >gi|169825632|ref|YP_001695790.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus C3-41] gi|168990120|gb|ACA37660.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus sphaericus C3-41] Length = 443 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 41/285 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D ++G ++ E D AS+TK+MT Y++ + ++ + + Sbjct: 44 LIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAIDAGTVKWDQEYHVTDYTYRMSQN 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN ++ + T+ + + + SAN VAIAE++ TE +F++ MN ++ LGL Sbjct: 104 RALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGTETEFLKLMNKKAEELGLE 163 Query: 149 ATHFMNAHGV------VQHGHYTTARD--------MAILSWRIKTDFPQYMHYFQI---- 190 F+NA G+ H T D +A L++ + D P+ + QI Sbjct: 164 GYKFVNATGLNNADLFGMHPAGTGPEDENVMPAKYVAKLAYHLLKDHPKVLETSQITKKT 223 Query: 191 --KGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +G E +NW V + G DG+KTG T +G +A + LIAV Sbjct: 224 FREGTE---DAIEMSNWNFMLPGLVFEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIAV 280 Query: 243 ILGALDRN------TRNKVSASLLSMGF--YNKTDRKKINYIIKD 279 ++ A+D + R +A L + GF ++K + NY KD Sbjct: 281 VMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPANYTFKD 325 >gi|331091125|ref|ZP_08339967.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405347|gb|EGG84883.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium 2_1_46FAA] Length = 321 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 11/140 (7%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKL 110 PAS TK++TA V + L +T+SK A+E+PP+ S K+G +TL L Sbjct: 97 PASTTKILTALVALKY-----GNLDDVVTVSKTATEFPPAASLCGIKEGDKLTLRELLYG 151 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AVAIAE + + ++F + MN + ++G + THF+N HG+ HYTTA D+ Sbjct: 152 LLLPSGNDAAVAIAEHISGSVEEFAKLMNKEAYSIGATHTHFVNPHGLHDDNHYTTAYDL 211 Query: 171 AILSWRIKTDFPQYMHYFQI 190 + I QY + +I Sbjct: 212 ----YLIFNQCIQYDEFIKI 227 >gi|293571656|ref|ZP_06682677.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980] gi|291608326|gb|EFF37627.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980] Length = 435 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKIAGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 AMIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|228961252|ref|ZP_04122872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798458|gb|EEM45451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 279 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG V+ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|169334052|ref|ZP_02861245.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM 17244] gi|169258769|gb|EDS72735.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM 17244] Length = 505 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 51/280 (18%) Query: 1 MRQFLVIIAMAM--LSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 + FL+++ + + SNI+ +++ + L Y D+ + + N + PAS T Sbjct: 11 LSSFLIVVVLLLNITSNIYAAAPKVSKDSSLGLYLYEDSTKSELYSHN-GNKKMYPASTT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKS 115 K+MTA + ++K+ L +T + P +ST K T++ + L L++ S Sbjct: 70 KIMTAALTLEYIKD----LNKKVTTGSELNRLPAGSSTASLYKNETLSYKDLLYGLMLPS 125 Query: 116 ANDIAVAIAESLCKTEKK------------FVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 ND A+ +A ++ K K FV+ MN +K +G++ THF N HG H Sbjct: 126 GNDAAIVLACNVGKVISKDKNISKDKAYSVFVKEMNKKAKEIGMTKTHFNNPHGFHDKNH 185 Query: 164 YTTARDMAILSWRIKTDFPQYMH-----YFQI------------KGLEIKGKKYPNTNWA 206 Y+T DMA+L+ DF Y Y++ L ++G KY Sbjct: 186 YSTPHDMAVLAA-YADDFSYYNRVVDSTYYETTTNKTTHRWSGHNALILRGSKY------ 238 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL--IAVIL 244 + A G KTG+T +G +V S+ + D+ + AV+L Sbjct: 239 --FYKPAKGDKTGYTGEAGRCVVGSS-ENDEGIRYYAVVL 275 >gi|317500403|ref|ZP_07958627.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898158|gb|EFV20205.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] Length = 298 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK+MTAY+ K L +T+S ++ + ST G ++TL + + Sbjct: 74 PASTTKVMTAYLAL-----KYGNLDDVVTMSATSTNFNWDESTCGLSAGDSLTLYDLICG 128 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+++S ND A AIAE + +++ F + MN +K LG + THF+N HG+ HYTT D+ Sbjct: 129 LLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDENHYTTTYDL 188 Query: 171 AIL 173 ++ Sbjct: 189 YLM 191 >gi|304385702|ref|ZP_07368046.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici DSM 20284] gi|304328206|gb|EFL95428.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici DSM 20284] Length = 415 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 133/283 (46%), Gaps = 37/283 (13%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETNKL--PYYTL-----LDTNTGHVIAENYPDHPW 51 M++ L++IA +L + + P + +T+ L P T +D+ TG V+ E + D Sbjct: 1 MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNA 107 AS++K+++AY++ ++ K P+ I+ + ++ +N G + T+ N Sbjct: 61 PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKSYTVKNL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----- 162 L ++ SAN +A+ ++ + +KFV M T ++ G+ NA G++++ Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDKMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180 Query: 163 ---------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-- 211 + +A DMA++ + +FP+ + +I+ L+ T L Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240 Query: 212 GA--------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 GA DG+KTG + A+G + A+ + +I+V+LGA Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFAATGKVNQRRIISVVLGA 283 >gi|260590039|ref|ZP_05855952.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|260539551|gb|EEX20120.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] Length = 448 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 36/256 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEYPP 91 L++ ++G V+ + + PAS TK+MTA ++ + + +T T I + A P Sbjct: 87 LMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPDLNKNITFTDIILPDLA----P 142 Query: 92 SNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 NST + G +T++ L +++ SAN++ +A + + + F MN + +G + Sbjct: 143 GNSTINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAMMNAKAAEIGCTN 202 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWA 206 THF+NA+G+ HYTTA D+A IL +K + + +I G KY P TN Sbjct: 203 THFVNANGLPDPNHYTTAYDLALILREAVKNE-----AFCKIAG----AAKYTIPPTNKT 253 Query: 207 VGT----------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + + GA KTG T A+ +V +A + D +LI V+L + + + Sbjct: 254 AASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRS-END 312 Query: 251 TRNKVSASLLSMGFYN 266 R + +L GF N Sbjct: 313 ERFTDTRTLFDYGFDN 328 >gi|254824881|ref|ZP_05229882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-194] gi|293594121|gb|EFG01882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-194] Length = 445 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|205371955|ref|ZP_03224774.1| D-alanine carboxypeptidase [Bacillus coahuilensis m4-4] Length = 453 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 28/242 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L++ TG ++ E + AS+TK+MT +++ + E + +++S + + + Sbjct: 44 LVEAETGKILYEKNSETALGVASMTKMMTEFLLLEAISEGRVSFDQMVSVSDYGHRISQD 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN K S ++ + + + SAN + IAE+L +E FV+ MN + LGL Sbjct: 104 TSLSNVPLKLDSQYSIKELYESMAIYSANGATITIAEALAGSETNFVKMMNEKAAELGLE 163 Query: 149 ATHFMNAHG------VVQHGHYT--------TARDMAILSWRIKTDFPQYMHYFQI---- 190 F+N+ G + QH T +A D A L++ + T +P+ + I Sbjct: 164 NYKFVNSTGLNNADLLGQHPQGTGETEENVMSANDTATLAYELLTRYPEVLETASIPKLT 223 Query: 191 --KGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G+ + N NW + + + G DG+KTG T +G + +A + D I V++ Sbjct: 224 FREGIADEQTNMDNWNWMLPSLVYGYEGMDGLKTGTTDFAGASFTGTAKRNDMRFITVVM 283 Query: 245 GA 246 A Sbjct: 284 NA 285 >gi|226225306|ref|YP_002759413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Listeria monocytogenes Clip81459] gi|225877768|emb|CAS06483.1| Putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328468231|gb|EGF39237.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816] Length = 445 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|257886898|ref|ZP_05666551.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,141,733] gi|257822952|gb|EEV49884.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,141,733] Length = 435 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|301299390|ref|ZP_07205670.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852996|gb|EFK80600.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 402 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 29/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I + AS++KL+TAY++ + K +T ++ A+E SN Sbjct: 31 VDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIH--KGEITWETRVTPTATEVDISN 88 Query: 94 ST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +T ++G + T+ + ++V SAN + I ++ T+ KF+ M T+K+LG+ Sbjct: 89 NTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGI 148 Query: 148 SATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 + +A+G+ + + RDMAI+S ++ ++P+ + ++ + Sbjct: 149 TDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILETTKLTKI 208 Query: 194 EIKGK----KYPNTNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + NTN + + L DG+KTG + A+G+ ++ + +I VI GA Sbjct: 209 DFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAK 268 Query: 248 DRNTRNKVSASLLSMGFYNKTD 269 D + R + +LL+ YN D Sbjct: 269 DNDARFDQTKNLLNY-IYNNYD 289 >gi|268607994|ref|ZP_06141725.1| hypothetical protein RflaF_00660 [Ruminococcus flavefaciens FD-1] Length = 364 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 23/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 L++ + +IA N + PASLTK+MT V ++ + + T + K + Y Sbjct: 109 LINADQNEIIAYNGERYRMYPASLTKVMTLIVA---VENAEDLHDTVLITDKMVTPYIEQ 165 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + F G T +++ L +I+ S D A A+A+ + +EKKFV+ MN ++ +GL A Sbjct: 166 DASRAGFLPGETPSVEALLYGMILNSGADAASAVAKYVAGSEKKFVELMNKKAEEMGLYA 225 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRI-----KTDFPQYMHYFQIKGLEIKGKKYPNT 203 THF N G+ HY+TA DMA IL + I K Y + F +G + +T Sbjct: 226 THFTNVVGLHDPQHYSTAEDMAMILKYAIGNKTCKKILSAYEYKFPETEQNPEGLTFTST 285 Query: 204 NWAVGTFLGAD--------GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + T + D G KTGFT +G I + A+ ++ I V+ G Sbjct: 286 LF---TRMYGDEIDGVKILGGKTGFTDKAGNCIESFAVINGETYILVLCGG 333 >gi|302385725|ref|YP_003821547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302196353|gb|ADL03924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 439 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ D AS TK+MT + + L+ +T S+NAS P Sbjct: 64 LMDASTGRILYGKNEDIARPMASTTKIMTCILALEY-----GNLSDTVTASQNASSQPKV 118 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + KG T L + L L+++S ND A+ IAE + +++ F MN +++LG + T+F Sbjct: 119 HLGVYKGETFLLKDLLYSLMLESHNDAAMMIAEHIGGSQEGFAGLMNQKARDLGCTDTYF 178 Query: 153 MNAHGVVQH--------GHYTTARDMA-ILSWRIKTDFPQYMHYFQIKG------LEIKG 197 + +G+ H TTA D+A I+++ I P+ + +I G +++G Sbjct: 179 ITPNGLDAREEKDGQVKEHSTTAADLARIMNYCIGQS-PKKKEFLEITGTKSYSFTDLEG 237 Query: 198 KK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K+ N N + GA KTGFT +G++ V +A + +LG Sbjct: 238 KRSYSCNNHNTLLAMMNGAFSGKTGFTGGAGYSYVGAAQDNGRIYTIALLGC 289 >gi|153814890|ref|ZP_01967558.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756] gi|331089590|ref|ZP_08338489.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847921|gb|EDK24839.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756] gi|330404958|gb|EGG84496.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium 3_1_46FAA] Length = 350 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK+MTAY+ K L +T+S ++ + ST G ++TL + + Sbjct: 126 PASTTKVMTAYLAL-----KYGNLDDVVTMSATSTNFNWDESTCGLSAGDSLTLYDLICG 180 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+++S ND A AIAE + +++ F + MN +K LG + THF+N HG+ HYTT D+ Sbjct: 181 LLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDENHYTTTYDL 240 Query: 171 AIL 173 ++ Sbjct: 241 YLM 243 >gi|308174109|ref|YP_003920814.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM 7] gi|307606973|emb|CBI43344.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus amyloliquefaciens DSM 7] gi|328552762|gb|AEB23254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens TA208] gi|328912440|gb|AEB64036.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus amyloliquefaciens LL3] Length = 383 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 8/219 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +G V+ H AS+TK+MTA + K +K +T+S NA + S Sbjct: 39 LIDGTSGRVLFAKDEHHKRRIASITKIMTAVLAIESGKMEKT-----VTVSPNAVKTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L + + L+++S ND A AIAE + + FV MN ++ +G+ T F Sbjct: 94 AIYLQPGQKVKLKDLVYGLMLRSGNDAAAAIAEYVGGSLDGFVFMMNQKAEQIGMENTKF 153 Query: 153 MNAHGVVQHGH-YTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209 N HG+ H + Y+TA DMA+L+ + +K + + ++ E + + N N G Sbjct: 154 QNPHGLDDHENLYSTAYDMALLTKYAMKIKEYRTVSGTKVYKAETMDRVWKNKNKLLTGL 213 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G KTG+T + +V++A + LIAV + D Sbjct: 214 YPYSTGGKTGYTKIAKRTLVSTASKDGTDLIAVTINDPD 252 >gi|90961063|ref|YP_534979.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius UCC118] gi|90820257|gb|ABD98896.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius UCC118] Length = 418 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 29/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I + AS++KL+TAY++ + + + T +T A+E SN Sbjct: 47 IDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVT--PTATEVDISN 104 Query: 94 ST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +T ++G + T+ + ++V SAN + I ++ T+ KF+ M T+K+LG+ Sbjct: 105 NTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGI 164 Query: 148 SATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 + +A+G+ + + RDMAI+S ++ ++P+ + ++ + Sbjct: 165 TDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILETTKLTKI 224 Query: 194 EIKGK----KYPNTNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + NTN + + L DG+KTG + A+G+ ++ + +I VI GA Sbjct: 225 DFNDNGEITTVNNTNELLQDDSNLEIDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAK 284 Query: 248 DRNTRNKVSASLLSMGFYNKTD 269 D + R + +LL+ YN D Sbjct: 285 DNDARFDQTKNLLNY-IYNNYD 305 >gi|254851941|ref|ZP_05241289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL R2-503] gi|254994152|ref|ZP_05276342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-064] gi|255520022|ref|ZP_05387259.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-175] gi|300763487|ref|ZP_07073485.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] gi|258605239|gb|EEW17847.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL R2-503] gi|300515764|gb|EFK42813.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] Length = 445 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|116874117|ref|YP_850898.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742995|emb|CAK22119.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 445 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAINDGKIKWDDKVTISEYAYKVSQDR 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AIAE + +EK FV MN ++ L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAIAEKVAGSEKAFVDLMNKKAEKLKLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ ++ G TAR MA L+ + D+P+ + E + Sbjct: 165 HQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLIKDYPEVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A++ +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVEDGMRVITVVLHA 283 >gi|315659004|ref|ZP_07911871.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590] gi|315496128|gb|EFU84456.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590] Length = 432 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 39/285 (13%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG ++ + + W AS+TKLMT Y+ +K+ L + I++N S P Sbjct: 58 SQTGQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPEL 117 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ L++ + S+N A+ +A + F + MN +K LG++ T+ Sbjct: 118 SNTKLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTY 177 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F N G + +TA+D AIL + D P +H+ + G Sbjct: 178 FTNPTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHG 237 Query: 198 KKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251 Y N ++ G L G DG+KTG + + +N + +G + VILG D N Sbjct: 238 VTYYTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLG 297 Query: 252 ----RNKVSASLLSMGF----YNKTDRK-------KINYIIKDFY 281 RNK+ +++ F Y K K K YI KD Y Sbjct: 298 GEKERNKMGNAIMESSFNQYAYKKVLSKGEHNINGKTYYIKKDLY 342 >gi|46908941|ref|YP_015330.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] gi|254930973|ref|ZP_05264332.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes HPB2262] gi|46882214|gb|AAT05507.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] gi|293582519|gb|EFF94551.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes HPB2262] gi|328469102|gb|EGF40050.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220] gi|332313185|gb|EGJ26280.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. Scott A] Length = 445 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|296332253|ref|ZP_06874715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674955|ref|YP_003866627.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150567|gb|EFG91454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413199|gb|ADM38318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 382 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 18/224 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA + K + +T+S NA S Sbjct: 38 VIDGASGRVLFAKDEHEKRRIASITKIMTAVLAIESGK-----MDETVTVSANAVRTEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + L + + L+++S ND AVAIAE + + FV MN ++ LG+ T F Sbjct: 93 AIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMENTRF 152 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQ-IKGLEIKGKKYPNTNWA---- 206 N HG+ H HY+TA DMA+L T + + +Q I G +I + + W Sbjct: 153 QNPHGLDDHENHYSTAYDMALL-----TKYAMKLKDYQKISGTKIYKAETMESVWKNKNK 207 Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G KTG+T + +V++A + LIAV + D Sbjct: 208 LLTMLYRYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPD 251 >gi|49185390|ref|YP_028642.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|49179317|gb|AAT54693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] Length = 272 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 16/219 (7%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 MT Y+V L + L + IS +E P T K +T+ + L L++ N Sbjct: 1 MTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVR--DLLHALLLTGNN 58 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAIL 173 +A+AE + E F Q MN +K L LS + F+NA G+ TTA ++ L Sbjct: 59 RSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKL 118 Query: 174 SWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTF------LGADGMKTGFTCASG 225 + R+ TDFP ++ ++ + K K NTN + + G DG++T F+ S Sbjct: 119 ATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSN 178 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ V++A +GD LI+VIL A + N+ + LL GF Sbjct: 179 YSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGF 217 >gi|293568621|ref|ZP_06679936.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071] gi|291588581|gb|EFF20414.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071] Length = 435 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|257884114|ref|ZP_05663767.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,501] gi|257819952|gb|EEV47100.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,501] Length = 435 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 36/280 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYNQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEDTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 D + N + +N+TDR ++Y ++ ++ L Sbjct: 284 -DGHAENPSAR-------FNETDR-LMDYCYDNWSEKELG 314 >gi|299820880|ref|ZP_07052769.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601] gi|299817901|gb|EFI85136.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601] Length = 441 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 33/266 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 ++ +TG V+ E PD AS+TK++ Y++ + + K T + IS A E Sbjct: 47 IEESTGKVLYEKNPDQLLGIASMTKMLDEYILLEKIDQGKLKWTDKVKISGYAHEVSQDT 106 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+A+AE + +EK FV MN + +L L Sbjct: 107 SLSNVPLRNGEFYTVKELYQAMAIYSANGAAIALAEKIAGSEKAFVGLMNEKANSLKLGK 166 Query: 150 THFMNAHGV--------VQHG-----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N G+ Q G + TAR MA L+ + +P + L + Sbjct: 167 HKFVNVTGLNNSDLKGKQQIGGKNSENKMTARGMAKLAKSLIDTYPDVLKTASTTKLAFR 226 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N NW + + G DG+KTG T +G + A+A Q +I VIL A Sbjct: 227 KGTSDQINMSNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAKQDGMRVITVILHAN 286 Query: 248 DRN-------TRNKVSASLLSMGFYN 266 N TR K + +L F N Sbjct: 287 GGNSSDQHDGTRFKETNKMLDYAFDN 312 >gi|295090182|emb|CBK76289.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 352 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 PY L+D ++G V+ E PASLTK+MTA + ++ + ++ P I Sbjct: 94 PYAILVDLDSGTVLKEKNSTDRIYPASLTKIMTAILAIENTEDLEEIVQLPDEI------ 147 Query: 89 YPP------SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 +PP S + F+ G + L + L +++ S + +A A+ + +E++FV MN+ + Sbjct: 148 FPPLYAQNASMAGFQPGEEVRLKDLLYGVLIPSGAECCLAFADRISGSEEEFVSLMNDKA 207 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAI-LSWRIKTDF 181 + LG+ THF N+ G+ HY+T D++I L + +K ++ Sbjct: 208 QELGMKNTHFTNSTGLHDPEHYSTVEDISILLQYALKNEY 247 >gi|222152529|ref|YP_002561704.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] gi|222113340|emb|CAR40938.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] Length = 393 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 45/265 (16%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S+ + NK ++D G ++ E+ + +PAS++KL T Y++F L + K L T I Sbjct: 41 SVKDINKPKSSIVIDAKNGDILWEDNINEHRDPASMSKLFTLYLLFEDLSKGKLSLETTI 100 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + + Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 101 TATDRDQAISGIYEISNNKIISGVEYPIKDLIFMTAVPSSNAATVMIANYLSNNDASAFI 160 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH---GHY------------TTARDMAILSWRIKTD 180 +N ++ LG+ T F NA G G Y T+A D+AIL++ + Sbjct: 161 DRINQKARELGMHDTFFSNASGAAAEAFKGLYNPDKYDLSAPNQTSAHDLAILTYHFLKE 220 Query: 181 FPQYMHY-----------------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 +P+ + Y F + G +Y T G DG+KTG + + Sbjct: 221 YPEIVTYTNQRIVKTMVGTPYEEEFTTYNYSLPGDRYGMT--------GVDGLKTGSSPS 272 Query: 224 SGFNIVASAIQGDQSLIAVILGALD 248 FN + + + + LI +++G D Sbjct: 273 GAFNAIVTTKRNQKRLITIVMGVGD 297 >gi|289551493|ref|YP_003472397.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus lugdunensis HKU09-01] gi|289181024|gb|ADC88269.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4 [Staphylococcus lugdunensis HKU09-01] Length = 432 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 123/285 (43%), Gaps = 39/285 (13%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG ++ + + W AS+TKLMT Y+ +K+ L + I++N S P Sbjct: 58 SQTGQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPEL 117 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T+ L++ + S+N A+ +A + F + MN +K LG++ T+ Sbjct: 118 SNTKLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTY 177 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F N G + +TA+D AIL + D P +H+ + G Sbjct: 178 FTNPTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHG 237 Query: 198 KKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251 Y N ++ G L G DG+KTG + + +N + +G + VILG D N Sbjct: 238 VTYYTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLG 297 Query: 252 ----RNKVSASLLSMGF----YNKTDRK-------KINYIIKDFY 281 RNK+ +++ F Y K K K YI KD Y Sbjct: 298 GEKERNKMGNAIMESSFNQYAYKKVLSKGEHNINGKTYYIKKDLY 342 >gi|257890484|ref|ZP_05670137.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,410] gi|260558933|ref|ZP_05831120.1| predicted protein [Enterococcus faecium C68] gi|293559772|ref|ZP_06676292.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162] gi|314950187|ref|ZP_07853472.1| beta-lactamase [Enterococcus faecium TX0082] gi|257826844|gb|EEV53470.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium 1,231,410] gi|260075041|gb|EEW63356.1| predicted protein [Enterococcus faecium C68] gi|291606255|gb|EFF35669.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162] gi|313643497|gb|EFS08077.1| beta-lactamase [Enterococcus faecium TX0082] Length = 435 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|229112452|ref|ZP_04241990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|229130265|ref|ZP_04259224.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|229147556|ref|ZP_04275903.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228635982|gb|EEK92465.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228653198|gb|EEL09077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228671100|gb|EEL26406.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] Length = 279 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG V+ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS 258 >gi|149010495|ref|ZP_01831866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP19-BS75] gi|147764976|gb|EDK71905.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP19-BS75] Length = 413 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEVSNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + G +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|323694964|ref|ZP_08109114.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum WAL-14673] gi|323501054|gb|EGB16966.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum WAL-14673] Length = 529 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 22/249 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G VI + PAS+TK++TA +V E+ +M T +T S+NA S Sbjct: 42 IMDANSGAVIYGKNIHATYAPASITKVLTALIVL----ERCSMDET-VTFSQNAVYNVES 96 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 NS+ + G T ++ + L L++KSAN+ A A+AE + T ++F MN + LG Sbjct: 97 NSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELGCQD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMH--YFQI-------KGLEIK-G 197 +HF N G+ HY +A DMA+++ DF + + Y+++ +G I G Sbjct: 157 SHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATTYYELPPNKKNPEGQGISPG 216 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K NW G KTG+T + +V A QGD + VIL + T+ + Sbjct: 217 NKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGDTKFVTVILHS--SGTQYSDTK 274 Query: 258 SLLSMGFYN 266 +LL+ GF N Sbjct: 275 ALLNFGFNN 283 >gi|227551939|ref|ZP_03981988.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium TX1330] gi|257895469|ref|ZP_05675122.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12] gi|293378334|ref|ZP_06624503.1| beta-lactamase [Enterococcus faecium PC4.1] gi|227178940|gb|EEI59912.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium TX1330] gi|257832034|gb|EEV58455.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12] gi|292643198|gb|EFF61339.1| beta-lactamase [Enterococcus faecium PC4.1] Length = 435 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ G+ Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|227892363|ref|ZP_04010168.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus salivarius ATCC 11741] gi|227865770|gb|EEJ73191.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus salivarius ATCC 11741] Length = 417 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 29/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I + AS++KL+TAY++ + K +T ++ A+E SN Sbjct: 46 VDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIH--KGEITWETRVTPTATEVDISN 103 Query: 94 ST------FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +T ++G + T+ + ++V SAN + I ++ T+ KF+ M T+K+LG+ Sbjct: 104 NTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGI 163 Query: 148 SATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 + +A+G+ + + RDMAI+S ++ ++P+ + ++ + Sbjct: 164 TDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILETTKLTMI 223 Query: 194 EIKGK----KYPNTNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + NTN + + L DG+KTG + A+G+ ++ + +I VI GA Sbjct: 224 DFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAK 283 Query: 248 DRNTRNKVSASLLSMGFYNKTD 269 D + R + +LL+ YN D Sbjct: 284 DNDARFDQTKNLLNY-IYNNYD 304 >gi|240146306|ref|ZP_04744907.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257201547|gb|EEU99831.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 327 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 24/232 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY+ + + L+ +TIS+NA+ +S G + +D+ L Sbjct: 102 PASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCGLHAGDVIRMDDLLYG 157 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++++S ND A+AIAES+ + ++F MN + LG + +HF+N +G+ HYT+ D+ Sbjct: 158 MMLRSGNDAAIAIAESISGSVEEFAALMNKEAAALGATQSHFVNPNGLPDENHYTSVYDL 217 Query: 171 AILSWRIKTD---FPQ------YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGM---- 216 ++ +R F Q Y +Q I+ + NTN + G DG Sbjct: 218 YLI-FRAALQNETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQYLSGHAKSPDGFTVIG 276 Query: 217 -KTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG T +G+ +V ++ + Q +I+++L A ++ + +LS GF N Sbjct: 277 GKTGTTGDAGYCLVLYSMNEQSQPIISIVLKADGKSNLYLLMNEMLS-GFAN 327 >gi|291539057|emb|CBL12168.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 423 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 27/308 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ E AS TK++T + + L + +T+S A+ P Sbjct: 62 LMDADSGSILYEKNGHQAMANASTTKILTCIIAL-----ENCDLDSEVTVSTLAASQPKV 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G L + L L+++S ND AVAIAE + T F + MN+ ++ +G ++F Sbjct: 117 HLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYF 176 Query: 153 MNAHGVV---QHG-HYTTARDMA-ILSWRIKT-----DFPQYMHYFQIKGLEIKGKK--- 199 + +G+ ++G H+TTA D++ I+ + IKT F Q + +I GK Sbjct: 177 ITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYT 236 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GA KTGFT +G+ V + + D++ I +L N + A Sbjct: 237 CCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTYKWADT 296 Query: 260 LSMGFYNKTDRKKI--NYIIKDFYQ----QNLSNEVPNISEEVCTTQKEI--INYNTQMK 311 + Y + +KI + I D + Q + + I EEV TT+ E+ + N ++ Sbjct: 297 KKLMQYGISRFRKISLDEIELDAGEYAPVQVVDGQGTKIGEEV-TTELEVAPVKENVELL 355 Query: 312 EAKDKESH 319 KD+E H Sbjct: 356 IEKDQEVH 363 >gi|47092644|ref|ZP_00230431.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b H7858] gi|47018939|gb|EAL09685.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b H7858] Length = 433 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|94991766|ref|YP_599865.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] gi|94545274|gb|ABF35321.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] Length = 275 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 24/241 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A D++T Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA-DQST 272 Query: 252 R 252 R Sbjct: 273 R 273 >gi|126651542|ref|ZP_01723745.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905] gi|126591491|gb|EAZ85597.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905] Length = 278 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 15/213 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPP 91 LL G V+ E D PASLTK+MTA V + + + P TI+K ++ Sbjct: 40 LLLNEQGDVLYEKNADAIIYPASLTKIMTAIVAIEMTDDLQMQTIVKPQTIAKYTAQ-NA 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F G +T+++ L ++ S D +AE++ +E +FV +MN ++ LG+ ATH Sbjct: 99 SMAGFHAGDFVTIEDLLYGTLLASGADATATLAEAIAGSEDEFVTYMNKKAQELGMDATH 158 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--------LEIKGKKYPNT 203 F+N G+ H ++ +DM+ L R + P + F K L I + Sbjct: 159 FINTSGLHDEAHVSSLQDMSKL-LRYALENPTFYQIFTSKAYTTHVPTELLIANSLFTRM 217 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 GT LG KTG+T +G +AS ++ D Sbjct: 218 PSMDGTILGG---KTGYTPEAGL-CLASLMEKD 246 >gi|4104145|gb|AAD01953.1| penicillin-binding protein homolog [Listeria monocytogenes] Length = 433 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+NA G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|169828716|ref|YP_001698874.1| penicillin-binding protein dacF [Lysinibacillus sphaericus C3-41] gi|168993204|gb|ACA40744.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine carboxypeptidase) [Lysinibacillus sphaericus C3-41] Length = 266 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 15/213 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPP 91 LL G V+ E D PASLTK+MTA V + + + P TI+K ++ Sbjct: 28 LLLNEQGEVLFEKNADAIIYPASLTKIMTAIVAIEMTDDLQMQTIVKPQTIAKYTAQ-NA 86 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F G +T+++ L ++ S D + +AE++ +E +FV +MNN ++ LG+ TH Sbjct: 87 SMAGFHAGDFVTIEDLLYGTLLASGADASGTLAEAIAGSEDEFVTYMNNKAQELGMDTTH 146 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK--------GLEIKGKKYPNT 203 F+N G+ + H ++ +D++ L R + P + F K L I + Sbjct: 147 FVNTSGLHEEAHVSSLQDISKL-LRYALENPTFYRIFTSKTYTTHVPTALLISNSLFTRM 205 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 GT LG KTG+T +G +AS ++ D Sbjct: 206 PGMDGTILGG---KTGYTPEAGL-CLASLMEKD 234 >gi|325846139|ref|ZP_08169233.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481732|gb|EGC84767.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 408 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + + +G + + D + AS++KLMT + + K T + +K A + Sbjct: 46 YLIGNQESGDIFYQKNADKTYPIASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLT 105 Query: 91 -PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P S+ K+G T+ + LIV S ND A +A + +E F + MN ++ L L Sbjct: 106 GPEYSSLGIKEGEEYTIKELITGLIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNL 165 Query: 148 SATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 + + NA GV + ++A+D+ LS I +P + Y + G++ K + Sbjct: 166 KSQKYYNASGVNTEDDTQNSSSAKDLFELSRIILKKYPDILEYSNMDGIDDNKKDIHKKS 225 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVS 256 T G G DG+KTG T +G ++ + G D I++++GA D TR+ Sbjct: 226 TIPLKGDIKGVDGLKTGTTEEAGSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAM 285 Query: 257 ASLL 260 L+ Sbjct: 286 TDLI 289 >gi|228993740|ref|ZP_04153645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228765951|gb|EEM14600.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 279 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D NTG V+ + PAS+ K+MT ++ +KE + ITI++NA + Sbjct: 41 YGVTIDANTGEVLYGKREEERSYPASVAKMMTTILLLENVKEDE-----EITITENAIKT 95 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + + G + D ALKL+++ SA+ IA +IAE + +++KFV+ MN +K LG Sbjct: 96 ESQSAKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGT 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+AI++ + +P + Y + ++ P N+ Sbjct: 156 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPIVLEYMNTTRTTLHTSQRAPKIANY 214 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 215 GREELYNDPYAIGSKSGLSALGQYTVVTVDEKDGKRVINVVLSS----TRTQLYPDTKKM 270 Query: 263 GFY 265 Y Sbjct: 271 AHY 273 >gi|52080833|ref|YP_079624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52786204|ref|YP_092033.1| DacB [Bacillus licheniformis ATCC 14580] gi|319645208|ref|ZP_07999441.1| DacB protein [Bacillus sp. BT1B_CT2] gi|52004044|gb|AAU23986.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus licheniformis ATCC 14580] gi|52348706|gb|AAU41340.1| DacB [Bacillus licheniformis ATCC 14580] gi|317393017|gb|EFV73811.1| DacB protein [Bacillus sp. BT1B_CT2] Length = 384 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 8/219 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA L + L +T+S A S Sbjct: 40 VMDGQSGRVLFAKDEHEKRRIASITKIMTA-----ILAVESGKLDETVTVSDRAVRTEGS 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L + + L+++S ND AVAIAE + + + FV MN + LG+ T F Sbjct: 95 SIYLTSGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLEGFVYMMNQKAAELGMENTLF 154 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 N HG+ H HY++A DMA+L+ T+ + + + K ++G G Sbjct: 155 RNPHGLDDHPDHYSSAYDMALLTKYAMTNETYKKIAGTKRYKAETMQGIWRNKNKLLTGL 214 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G KTG+T + +V+++ + LIAV + A D Sbjct: 215 YKYSTGGKTGYTKLAKRTLVSTSSKDGTDLIAVTINAPD 253 >gi|325265477|ref|ZP_08132200.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324029335|gb|EGB90627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 476 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 49/297 (16%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D +G ++ D PAS+TKL+T V + A LT + ++++ +Y Sbjct: 92 VMDMESGAILYGKNMDAKHFPASITKLLTTLVAL-----ENADLTDKVKFTEDSISFLQY 146 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-----KKFVQHMNNTSKN 144 + K G ++L+++L +++ SAN+++ A+AES+ + F+Q MN+ +K Sbjct: 147 DDAQIGMKVGEELSLEDSLHAVLLASANEVSHAVAESVGELRLGGNYDTFIQKMNDRAKE 206 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIK----GLEIKGK 198 LG + +H++N +G+ HYTTA DMA+++ + + +F M + K L + + Sbjct: 207 LGCTNSHWVNPNGLHDDEHYTTAHDMALIASAVYQQEEFRTIMGKLEYKIGATNLTQEER 266 Query: 199 KYPNTN---WAVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + + W + G KTG+T + +V A GD L AV+ Sbjct: 267 VFQQNHKMLWPENYYYYEYCTGGKTGYTDQAKTTLVTMADNGDMHLAAVV---------- 316 Query: 254 KVSASLLSMGFYNKTD-RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 L G TD R ++Y+ +F + + N T ++I N+NTQ Sbjct: 317 -----LYDYGVDAYTDTRAMMDYVFSNFKKVPVKN---------LETSEDINNFNTQ 359 >gi|228999784|ref|ZP_04159358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|229007339|ref|ZP_04164938.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228753944|gb|EEM03383.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228759991|gb|EEM08963.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 273 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D NTG V+ + PAS+ K+MT ++ +KE + ITI++NA + Sbjct: 35 YGVTIDANTGEVLYGKREEERSYPASVAKMMTTILLLENVKEDE-----EITITENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + + G + D ALKL+++ SA+ IA +IAE + +++KFV+ MN +K LG Sbjct: 90 ESQSAKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+AI++ + +P + Y + ++ P N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPIVLEYMNTTRTTLHTSQRAPKIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYNDPYAIGSKSGLSALGQYTVVTVDEKDGKRVINVVLSS----TRTQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|331084355|ref|ZP_08333459.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401619|gb|EGG81200.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium 6_1_63FAA] Length = 417 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 36/256 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEYPP 91 L++ ++G V+ + + PAS TK+MTA ++ + + +T T I + A P Sbjct: 49 LMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPDLNKNITFTDIILPDLA----P 104 Query: 92 SNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 NST + G +T++ L +++ SAN++ +A + + + F MN + +G + Sbjct: 105 GNSTINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAMMNAKAAEIGCTN 164 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWA 206 THF+NA+G+ HYTTA D+A IL +K + + +I G KY P TN Sbjct: 165 THFVNANGLPDPNHYTTAYDLALILREAVKNE-----AFCKIAG----AAKYTIPPTNKT 215 Query: 207 VGT----------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + + GA KTG T A+ +V +A + D +LI V+L + + + Sbjct: 216 AASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRS-END 274 Query: 251 TRNKVSASLLSMGFYN 266 R + +L GF N Sbjct: 275 ERFTDTKTLFDYGFDN 290 >gi|271968855|ref|YP_003343051.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium roseum DSM 43021] gi|270512030|gb|ACZ90308.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium roseum DSM 43021] Length = 313 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 15/238 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L D TG V ASLTK+MTAYVV ++A L +T++ ++A+ Sbjct: 64 LFDPGTGTVHLSKQATRRMPVASLTKVMTAYVVL-----REAGLNDIVTVNAGDVRHAAT 118 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + + + G +T+ L ++ S D A+A E +FV MN +++LGL+ Sbjct: 119 NDATAAALRAGERLTVRELLYGAMLPSGADATHALARVYGPGESRFVAKMNAAARSLGLT 178 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTD-----FPQYMHYFQIKGLEIKGKKYPN 202 T + N+ G+ + Y+TA+D A L+ + D Y K + + N Sbjct: 179 GTRYGNSDGLPKPSPGYSTAQDQARLADVVLRDPVLRTIASTRRYVVRKSKVHRAHVWTN 238 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN +G GA G+KTG+T A+G+ + +A + LI VILG + R + + LL Sbjct: 239 TNKLLGEAPGALGVKTGYTRAAGYCLSFAADRDGHRLIGVILGDTRADRRFQTAGRLL 296 >gi|218234016|ref|YP_002369811.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus B4264] gi|229049698|ref|ZP_04194255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|229153200|ref|ZP_04281379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|296505443|ref|YP_003667143.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|218161973|gb|ACK61965.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264] gi|228630299|gb|EEK86949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228722611|gb|EEL73999.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|296326495|gb|ADH09423.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 279 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG V+ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS 258 >gi|269836472|ref|YP_003318700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter thermophilus DSM 20745] gi|269785735|gb|ACZ37878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter thermophilus DSM 20745] Length = 550 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 32/244 (13%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNS 94 +TG V+ + D PASLTK+ TA V + A L ITI+++ E S Sbjct: 51 DTGEVLFDKGMDAETAPASLTKIFTAAVAL-----ETAPLDQLITIAEDDLVGE---SAM 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--------KKFVQHMNNTSKNLG 146 G +TL L +++ S ND A+AIA L + F++ +N+ ++ LG Sbjct: 103 GLVVGQDVTLRTLLYGMMLPSGNDAAMAIARGLSELSDGSSGESIAPFMERVNDLAQRLG 162 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYP 201 L+ T +N HG+ + GH ++ARD+A ++ P++ Y+ +G E+ Sbjct: 163 LTHTRLVNPHGLDEPGHVSSARDIAAIT-MYALGNPEFRRIIGSPYYVDEGFELY----- 216 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTRNKVSASLL 260 N N + ++ G G KTG T +G+ +V A + ++IAV+LG+ +D + + SLL Sbjct: 217 NNNELLTSYTGLIGGKTGITDEAGYCLVEVAQRDGHTIIAVVLGSTIDDWYTDAI--SLL 274 Query: 261 SMGF 264 GF Sbjct: 275 DYGF 278 >gi|312862634|ref|ZP_07722875.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] gi|311101894|gb|EFQ60096.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] Length = 417 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 34/274 (12%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++I + ++ P L+ +T+ + ++T TG V+ E P AS+TK Sbjct: 7 QHIIMITLILIGLATPALAQEQTDDFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + IS +YP + + + S + LD+ L Sbjct: 67 ILTAYMVYKAVDQGKINWDTEVDIS----DYPFNLTVDSEVSNIPLDSRKYTVKQLLDAT 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 123 LISSANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 182 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + + +G K N+ + G Sbjct: 183 KPDDENTMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T +G + VA + + SLI +++ A Sbjct: 243 VDGLKTGTTELAGASFVAHSNEHGMSLITIVMNA 276 >gi|322390982|ref|ZP_08064488.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] gi|321142357|gb|EFX37829.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 903] Length = 413 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 35/294 (11%) Query: 4 FLVIIAMAMLSNIFPF-LSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLM 60 FL + +L P+ + +A+ LP + + + +TG ++ E + + L+ L+ Sbjct: 5 FLSFLTFILLLCSLPYQVVLADELDLPAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLL 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T Y++F + EKK L PI +S+ A ++ + + + + T+D L L+V +++ Sbjct: 65 TTYLIFEAIHEKKLSLKDPIKLSEKALALNDIEGAGTLPMEANQYTVDQLLTALLVGNSS 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----------VQHGHYTT 166 A+A+AE + +EK FV+ M G+ + H +NA G+ + + + Sbjct: 125 TAALALAEKVGGSEKSFVEKMKQKLSEWGIQSPHLINATGLNTQTINGDPDGKEDENQLS 184 Query: 167 ARDMAILSWRIKTDFPQYMHY----------FQIKGLEIKGKKYPNTNWAVGTFLGADGM 216 A D+A+++ + DFP+ Y QI+ + + PN G DG+ Sbjct: 185 AYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRS------GVDGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYNKT 268 + + G AS Q +I V+LG A+D + + A+ M + +T Sbjct: 239 RVSNSTKGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRT 292 >gi|317057431|ref|YP_004105898.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] gi|315449700|gb|ADU23264.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] Length = 382 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 17/217 (7%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 +TG V+ E D P AS TK+M+A +V ++ L T+ A S+ Sbjct: 47 STGEVLFEKNADEPLPMASTTKIMSALIVL-----EQEDLDERFTVDSEAVNTEGSSMGL 101 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 ++G ++L + +++ S ND A A A + + + FV MN ++ LGL +THF+ Sbjct: 102 REGDEVSLRDLACGMLLPSGNDAANAAAVRVAGSIENFVGMMNERAEKLGLESTHFVTPS 161 Query: 157 GVVQH--GHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT--F 210 G+ + HY+TARDMA+L+ DF ++K LE Y W + T Sbjct: 162 GLDDYTDDHYSTARDMAVLAAEAMENQDFRDICGLQRVK-LEFGCPPY--ERWLINTNKL 218 Query: 211 L---GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 L G G+KTGFT + +V+S ++ LI V L Sbjct: 219 LKNHGITGIKTGFTDKARRCLVSSCMREGCELICVTL 255 >gi|158320612|ref|YP_001513119.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140811|gb|ABW19123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 371 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ E AS TK+MTA + + L + I++NA S Sbjct: 38 VMDVETGRILYEKNMHLKLPMASTTKIMTALLAIENIP-----LEKRVKINQNAQGIEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + + + + L+++S ND A AIA + + + F MN + +G T+F Sbjct: 93 SIYLRANEEVKAIDLVYGLMLRSGNDAAAAIAYEVSGSIEAFADLMNERANKIGAKNTNF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWR----------IKTDF-----PQYMHYFQIKGLEIKG 197 N HG+ HYTTA D+A+++ +KT F +Y H Sbjct: 153 TNPHGLHHENHYTTAYDLALITREALKNSVFKEVVKTKFWTADRNEYKH----------- 201 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + G DG+KTG+T SG +V+SA + I++ L + NK Sbjct: 202 --FANKNIGLEICEGGDGVKTGYTTRSGRCLVSSASREGMQFISITLDDYNWFDTNK--- 256 Query: 258 SLLSMGF 264 LL GF Sbjct: 257 KLLDEGF 263 >gi|217966043|ref|YP_002351721.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein5) (PBP-5) [Listeria monocytogenes HCC23] gi|217335313|gb|ACK41107.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein5) (PBP-5) [Listeria monocytogenes HCC23] Length = 445 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 105 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGE 164 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ ++ G TAR MA L+ + D+P + E + Sbjct: 165 HQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 225 KGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 283 >gi|291563035|emb|CBL41851.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 459 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 26/248 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D G V+ E D PAS TKLMTA +V +KA L +T SK A S Sbjct: 102 LYDVTNGRVLFEKNADEKLAPASTTKLMTALLVL-----EKANLDDKVTFSKTAVTNLES 156 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + +G +++ ++L L++KSAN++A +AE + + F + MN + LG + Sbjct: 157 GAVKIGLVEGDQVSVKDSLYALLLKSANEVANGLAEHVSGSISAFAELMNARAAELGCTN 216 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWR-------IKTDFPQYMHYFQIKGLEIK----GK 198 THF+N +G+ YTT RDMA ++ + D + K + G Sbjct: 217 THFVNPNGLNSDQQYTTCRDMAKIAAAAFANKTLCEIDSTLSYKFPATKAAAARTITPGH 276 Query: 199 K--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 K YPN + + G G KTG+T +G +V + ++AVIL + ++T + + Sbjct: 277 KMLYPNDS---RYYAGIVGGKTGYTSKAGNTLVTCVEKNGVRMVAVILKS--KSTHYEDT 331 Query: 257 ASLLSMGF 264 +L G+ Sbjct: 332 KKMLDYGY 339 >gi|225403123|ref|ZP_03760420.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme DSM 15981] gi|225043241|gb|EEG53487.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme DSM 15981] Length = 492 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 38/259 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ P+ PAS+TKL+TA VV + + L +T S++A S Sbjct: 44 VMDQDSGAVLFGQNIHLPFAPASITKLLTALVVI-----ENSKLDDMVTFSQSAVYDVES 98 Query: 93 NST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G +++++ L +L++ S+N A A+AE + + + FV+ MN+ K +G + Sbjct: 99 GSGNKLHMETGDELSVEDCLYMLLLLSSNQAANALAEHVAGSREAFVEMMNDRIKEIGCT 158 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWR-------IKTDFPQYMHY-----------FQI 190 +HF N G+ Y +A DMA+++ +K D + F + Sbjct: 159 ESHFANPSGLNDDNQYVSAYDMALIAREAFNNETLLKIDSSKSYSIGATANNPNGASFNM 218 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + I + + + GT G KTG+T +G +V + + LIAV+L + Sbjct: 219 EHRLIMAEDTSSQYYCEGTMAG----KTGYTSIAGNTLVTLTERDGRRLIAVVL----KG 270 Query: 251 TRNKV---SASLLSMGFYN 266 T+ + S SLL GF N Sbjct: 271 TQPQYYLDSKSLLEFGFAN 289 >gi|253579887|ref|ZP_04857155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848886|gb|EES76848.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 472 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 18/247 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF--SFLKEKKAMLTTPITISKNASEYP 90 +++T+T V+ D P PAS K+MT V S L E+ M T ++ + Sbjct: 117 VMETSTNTVLYSKNADQPLYPASAVKIMTCLVALENSSLDEQVTMTATGVSGVTDGG--- 173 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +N + + T++ L ++V SANDIA+ +AE + + FVQ MN ++ LG + T Sbjct: 174 -ANISSQLDEVFTMEQCLYAIMVASANDIALQVAEHVGGSVDAFVQTMNTRAQELGCTNT 232 Query: 151 HFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTN-- 204 F N G+ + TA DMA I+ + D + + + + + G + TN Sbjct: 233 VFTNPTGLPDENQHITAHDMALIMEAAMANDTFRTIAATTSYTLPATNVSGGERVLTNNF 292 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + G + G K G+T ASG +V A + + L+ ++L T ++ A L Sbjct: 293 TMINSTSDGYYKPCIGGKEGYTEASGSTLVCEASKNNMKLVCIVLNGASGVTDDEAIA-L 351 Query: 260 LSMGFYN 266 L+ GF N Sbjct: 352 LNYGFDN 358 >gi|228955274|ref|ZP_04117282.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804407|gb|EEM51018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 279 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|167745617|ref|ZP_02417744.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662] gi|167654929|gb|EDR99058.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662] Length = 316 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 30/240 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ T V+A PAS+TK+MTA +V + L +TI K+ + P+ Sbjct: 73 LVNNTTNQVVAAQKVFDKAYPASITKIMTALLVL-----ENCRLDDVVTIDKDITFDDPA 127 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + KKG +T++ L LIV SAND A+A+ + ++KKFV MN ++ LG + T Sbjct: 128 AVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGATNT 187 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 +F N +G+ HYTTA D+ + I + ++ + I G +Y N + F Sbjct: 188 NFENPNGLHLKNHYTTAYDL----YLIFQELVKHNEFLSIAGKASSYIEYTNQKNKLQAF 243 Query: 211 LGAD------------------GMKTGFTCASGFN-IVASAIQGDQSLIAVILGALDRNT 251 A G KTG T +G I+ + + + I+VIL A + T Sbjct: 244 DMAATNQYLLGNYNLPHKVFMLGGKTGTTTEAGSCLIILTKNEEGEEFISVILKASSKQT 303 >gi|223933668|ref|ZP_03625645.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis 89/1591] gi|330833493|ref|YP_004402318.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3] gi|223897661|gb|EEF64045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis 89/1591] gi|329307715|gb|AEB82131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3] Length = 413 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 132/275 (48%), Gaps = 31/275 (11%) Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+FL+ + +A+ P L+ + + ++ ++G ++ E + + AS++K Sbjct: 1 MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD-------NALKLL 111 ++ Y+V+ L + + L T + IS +YP S ++ + S + LD + L Sbjct: 61 TLSIYLVYEALAKGEITLDTMVDIS----DYPYSLTSNTELSNVNLDARSYSVRDLLNAS 116 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 ++ S+N +A+AE + +E FV M + G++ T +N G+ Sbjct: 117 LITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGS 176 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFL--GA 213 + + +A D+AI++ R+ D+PQ + + + G Y +TN + GT G Sbjct: 177 SPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGV 236 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 237 DGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 271 >gi|291087663|ref|ZP_06347077.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291074391|gb|EFE11755.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 341 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 30/218 (13%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MTA + ++ L+ +T++++A +E S + K G T+T++ L Sbjct: 117 PASITKVMTAILAI-----EEGELSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYG 171 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND A AIA + + + F + MN ++ LG + THF N +G+ HYTTA D+ Sbjct: 172 LMIPSGNDAANAIAVHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDL 231 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-------WAVGTFL--GAD------- 214 ++ + P++ ++ G + Y + + W VG + G + Sbjct: 232 YLI-FNEALKLPKFR---EVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVT 287 Query: 215 --GMKTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 G KTG T A+G+ I+A + + I+V+L A +R Sbjct: 288 VLGGKTGTTQAAGYCLIMAERDESGREYISVVLKAENR 325 >gi|227876929|ref|ZP_03995025.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus JV-V01] gi|256850179|ref|ZP_05555609.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus MV-1A-US] gi|227863486|gb|EEJ70909.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus JV-V01] gi|256713151|gb|EEU28142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus MV-1A-US] Length = 433 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K FV M K G+ Sbjct: 115 EY--SNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFVDQMRAQVKKWGI 172 Query: 148 SATHFMNAHGV----VQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKGL 193 T A G+ V Y +A+DMAI+ + DFP+ + ++ L Sbjct: 173 EDTKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLAHL 232 Query: 194 EIK----GKKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 233 DFKDAGHATKMANFNWMLKGLSQYDPAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|222150410|ref|YP_002559563.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402] gi|222119532|dbj|BAH16867.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402] Length = 429 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 27/234 (11%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPP-SNS 94 G V+ + D W AS++KLMT Y++ + + + T + ++ N S+ P SN+ Sbjct: 55 GQVLYSDDADTKWPLASMSKLMTLYLLLQEMDKGEITFNTKVKVTDKFYNISKLPALSNN 114 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + + T+D + +++ S+N ++ + K + +F+ MN +K LG+++T F N Sbjct: 115 NLRLNAVYTVDELMPIMLTNSSNAATYMLSSLVTKNDSEFIDKMNQEAKRLGMNSTKFYN 174 Query: 155 AHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEI 195 G + + ++A+D AIL + +++P + Y + +K I Sbjct: 175 PVGAPNNLLNEYKAKKYPQNEDNISSAKDYAILCQHLVSEYPGILKYTKRVDVTVKKGTI 234 Query: 196 KGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + + N ++ + G DG+KTG + +GFN + + D +I V++G Sbjct: 235 DEETFHTYNHSLEGAKLGYKGVDGLKTGSSDTAGFNTAITGKKNDMRIIQVMMG 288 >gi|206976429|ref|ZP_03237336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217962480|ref|YP_002341052.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|229141730|ref|ZP_04270260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|206745353|gb|EDZ56753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217066911|gb|ACJ81161.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|228641798|gb|EEK98099.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 279 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGRYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVITVVLSS----TRKQLYPDTKKMAHY 273 >gi|317133056|ref|YP_004092370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] gi|315471035|gb|ADU27639.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] Length = 389 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 115/238 (48%), Gaps = 15/238 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VIA AS TK+MT L + L T+ A S Sbjct: 34 LVEQTTGRVIAGADMGERLPMASTTKIMT-----GLLACESGELDKTFTVPPEALTVEGS 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + ++TL + L+++S ND A +IA L + + F MN ++ L L+ THF Sbjct: 89 SMGLQPDESITLRALVYGLLLESGNDAANSIAMLLGGSVEGFAAQMNAKARALHLNDTHF 148 Query: 153 MNAHGVVQHGHYTTARDMAIL-SWRIKT-DFPQYMHYFQI----KGLEIKGKKYPNTNWA 206 N G+ GHYTTA D+A L ++ +K DF Q + + G+ + N N Sbjct: 149 ANPSGLGADGHYTTALDLARLGAYAMKNPDFAQIVGTRRATVSYNGIA-NARTLINHNRL 207 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G++ G G+KTGFT SG +V+ A +G +L+ L D + R+ A+LL GF Sbjct: 208 LGSYDGEIGIKTGFTKKSGRCLVSCARRGGVTLVLATLNDPD-DWRDH--AALLDQGF 262 >gi|142820|gb|AAA22377.1| penicillin-binding protein 5 [Bacillus subtilis] Length = 382 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 18/220 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+MTA + K + +T+S NA S Sbjct: 38 IIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGS 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + L + + L+++S ND AVAIAE + + FV MN ++ LG+ T F Sbjct: 93 AIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRF 152 Query: 153 MNAHGVVQH-GHYTTARDMAIL------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 N HG+ H HY+TA DMAIL + R+ DF Q + +E + N N Sbjct: 153 QNPHGLDDHENHYSTAYDMAILTKYAIEAERLSKDFRH--KNIQAETME---SVWKNKNK 207 Query: 206 AVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G KTG+T + +V++A + LIAV + Sbjct: 208 LLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTI 247 >gi|295091874|emb|CBK77981.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 283 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 30/218 (13%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MTA L ++ L+ +T++++A +E S + K G T+T++ L Sbjct: 59 PASITKVMTA-----ILAIEEGELSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYG 113 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND A AIA + + + F + MN ++ LG + THF N +G+ HYTTA D+ Sbjct: 114 LMIPSGNDAANAIAVHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDL 173 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-------WAVGTFL--GAD------- 214 ++ + P++ ++ G + Y + + W VG + G + Sbjct: 174 YLI-FNEALKLPKFR---EVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVT 229 Query: 215 --GMKTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 G KTG T A+G+ I+A + + I+V+L A +R Sbjct: 230 VLGGKTGTTQAAGYCLIMAERDESGREYISVVLKAENR 267 >gi|317472783|ref|ZP_07932094.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|316899702|gb|EFV21705.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 287 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 7/143 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ T V+A PAS+TK+MTA +V + L +TI K+ + P+ Sbjct: 82 LVNNTTNQVVAAQKVFDKAYPASITKIMTALLVL-----ENCRLDDVVTIDKDITFDDPA 136 Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + KKG +T++ L LIV SAND A+A+ + ++KKFV MN ++ LG + T Sbjct: 137 AVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGATNT 196 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 +F N +G+ HYTTA D+ ++ Sbjct: 197 NFENPNGLHLKNHYTTAYDLYLI 219 >gi|331700972|ref|YP_004397931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] gi|329128315|gb|AEB72868.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] Length = 421 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 24/241 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92 +D ++G ++ + + P AS++KLMT Y+V ++ K + IS ++ + Sbjct: 44 VDADSGQILYQKNANQPRAIASISKLMTVYIVHQQIRANKLAWDDKVKISSELAKLSTAS 103 Query: 93 ---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 N G ++ + +V+SAN A+A+ + + T KF MN T++ +G+S Sbjct: 104 GLTNVPLTAGKAYSVRQLVNATLVESANAAALALGQKVAGTATKFAALMNKTARKIGISD 163 Query: 150 THFMNAHGVVQH-------GHYT-------TARDMAILSWRIKTDFPQYMHYFQ-----I 190 HF NA G+ H + +A+D+A+L+ ++ FP+ + + Sbjct: 164 GHFYNASGLTNKLTGKLALSHVSANAENLLSAKDVALLAQKLLQKFPKVTNITEQTTSTF 223 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDR 249 G + G + +G + DG+KTG + +G V SA G +I V+LGA ++ Sbjct: 224 YGTTMTGHNQLIDDHNLGQGVRVDGLKTGTSDKAGACFVGSATTNGKHRIITVVLGARNK 283 Query: 250 N 250 + Sbjct: 284 S 284 >gi|290891934|ref|ZP_06554931.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-071] gi|290558528|gb|EFD92045.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-071] Length = 433 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|253577898|ref|ZP_04855170.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850216|gb|EES78174.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 356 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 26/227 (11%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MTA + L+ K T IT E F G +TLD L L+ Sbjct: 132 PASITKIMTAMLA---LQSGKLNDTVTITQDNVTLEDGSQVCGFVAGDQVTLDQLLHCLL 188 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V S ND A AIAE + + + FVQ MN+ + LG + THF N HG+ HYTT D+ + Sbjct: 189 VYSGNDAASAIAEYVGGSTENFVQMMNDYAAKLGCTGTHFSNPHGLQDENHYTTPYDIYL 248 Query: 173 L--------SWRIKTDFPQY-MHYFQIKGLEIKGKKYPNTNWAVG--------TFLGADG 215 + + T+ P Y + Y G E ++ G T LG Sbjct: 249 MLNEAFTYPEFTEITELPSYTVTYTGSDGTEKSTTLTATDHYLTGEATAPKDVTILGG-- 306 Query: 216 MKTGFTCASGFNIVASAIQG--DQSLIAVILGALDRNTRNKVSASLL 260 KTG T +G N +A Q ++ +++++GA + + SLL Sbjct: 307 -KTGTTEVAG-NCLAILTQNAYGKTFVSIVMGAATKELLYQEMNSLL 351 >gi|218512347|ref|ZP_03509187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3] Length = 221 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%) Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 +K + ++ AND + +AE + +E++F Q M ++ LG+ F N+ G+ TA Sbjct: 2 IKGVAIQGANDSCIILAEGMAGSEQQFAQSMTRRARELGMEKAVFGNSTGLPDGKSKVTA 61 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 R+M L+ ++ +P YF E N N +G LGADG+ TGF G++ Sbjct: 62 REMVTLATTLQQSYPNLYPYFAQLDFEWNKIFQRNRNPLLGLDLGADGLATGFADGEGYS 121 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 IVAS + + L + G R + + +L G Sbjct: 122 IVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 158 >gi|291527816|emb|CBK93402.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1] Length = 465 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 44/248 (17%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-S 87 P +++ NTG V+ E PAS+TK++T Y+ K + +T SK A Sbjct: 35 PCAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTILNCK-----MDEKVTFSKEAVK 89 Query: 88 EYPPSNSTFKK--GSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNT 141 E +S+ K+ G MT++ L ++++SAN+ A A AE L F+ MN Sbjct: 90 ESSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKE 149 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----------------------RIK 178 +K LG + THF NA+G+ H+T+A DM ++S + Sbjct: 150 AKELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRNDEFRKITGTKTYIIPPTNKHT 209 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P Y H+ + +P +++ G KTG+T + +V A + + Sbjct: 210 EDTPLYNHHAML---------HPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLT 260 Query: 239 LIAVILGA 246 L AVI+ A Sbjct: 261 LCAVIMNA 268 >gi|307572345|emb|CAR85524.1| dacA [Listeria monocytogenes L99] Length = 433 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|295094843|emb|CBK83934.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1] Length = 321 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MT +V +++ L +T+++ + ++ S G ++T+ N L Sbjct: 92 PASMTKIMTGILVMESIEKGDISLDDVVTLNRKVTFDDWDAMASDLVGGCSLTVKNLLYG 151 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND V +AE + +E F MN +K +G + THF+N HG+ HYTTA D+ Sbjct: 152 LMITSYNDCGVILAELIAGSESAFCDMMNEKAKEIGATNTHFVNCHGLHDDDHYTTAYDL 211 Query: 171 AIL 173 ++ Sbjct: 212 YLI 214 >gi|255022591|ref|ZP_05294577.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein [Listeria monocytogenes FSL J1-208] Length = 433 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS+ A + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ ++ G TAR MA L+ + D+P + E + Sbjct: 153 HQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q +I V+L A Sbjct: 213 KGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHA 271 >gi|291524141|emb|CBK89728.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629] Length = 465 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 44/248 (17%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-S 87 P +++ NTG V+ E PAS+TK++T Y+ K + +T SK A Sbjct: 35 PCAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTILNCK-----MDEKVTFSKEAVK 89 Query: 88 EYPPSNSTFKK--GSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNT 141 E +S+ K+ G MT++ L ++++SAN+ A A AE L F+ MN Sbjct: 90 ESSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKE 149 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----------------------RIK 178 +K LG + THF NA+G+ H+T+A DM ++S + Sbjct: 150 AKELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRNDEFRKITGTKTYIIPPTNKHT 209 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P Y H+ + +P +++ G KTG+T + +V A + + Sbjct: 210 EDTPLYNHHAML---------HPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLT 260 Query: 239 LIAVILGA 246 L AVI+ A Sbjct: 261 LCAVIMNA 268 >gi|306830534|ref|ZP_07463702.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427328|gb|EFM30432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 416 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 21/234 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG V+ E P AS+TK++T Y+V+ + E K T ++IS A + ++ Sbjct: 41 VEATTGKVLYEKDATTPDGIASMTKILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANS 100 Query: 94 STFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + T++ + +V SAN A+A+AE + TE KFV M + G++ Sbjct: 101 DASNVPMEAREYTVEQLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDA 160 Query: 151 HFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +NA G+ + G +T ARD+AI++ + T++P + + Sbjct: 161 TIVNASGLNNSYLGDNIYPGSSSTDENMMSARDVAIIAQHLITEYPDILKITSQTTADFD 220 Query: 197 GKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N+ + G DG+KTG T +G + VA++ + +I+V++ A Sbjct: 221 GTTMNTYNYMLEGMPYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNA 274 >gi|323694553|ref|ZP_08108719.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum WAL-14673] gi|323501321|gb|EGB17217.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum WAL-14673] Length = 353 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 27/222 (12%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 MTA +V +++ L +T S+NA E K G ++ + + L++KSA Sbjct: 1 MTALLVL-----ERSSLDDTVTFSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSA 55 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI---- 172 N++A +AE + + F MN + +LG + THF+N +G+ HYTTARDMA+ Sbjct: 56 NEVANGLAEHVAGSVSGFADLMNQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKA 115 Query: 173 ---------LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTC 222 ++ + DFP ++ L + G K N A G + G G KTG+T Sbjct: 116 AFENQTLSQIASTVSYDFPATASVPTVRKLTM-GHKMVNP--ANGEYYQGIVGGKTGYTS 172 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G +V A + + LIAV+L + + T + +LL GF Sbjct: 173 LAGNTLVTCAERDGKRLIAVVLKS--KQTHYTDTKALLDYGF 212 >gi|332522835|ref|ZP_08399087.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus str. Jelinkova 176] gi|332314099|gb|EGJ27084.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus str. Jelinkova 176] Length = 412 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 121/252 (48%), Gaps = 25/252 (9%) Query: 17 FPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 P +++AE KLP + + +TG ++ E ASL+K++T Y+V+ ++ Sbjct: 16 LPKVTLAEAYKLPARSGIAFEVSTGKILYEKDAKKKLPIASLSKVLTTYLVYKEVQSGNL 75 Query: 75 MLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 TP+ IS E Y SN T++ L ++V +AN A+A+AE + T Sbjct: 76 SWDTPVKISNYPYELTANYSISNVPLD-ARQYTVEELLTAMLVTNANSPAIALAEKISGT 134 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYT------------TARDMAILSWR 176 E FV M ++ + + +NA G+ Q G++ +A D+AI++ Sbjct: 135 EPLFVDKMQKQLRDWKIHKANLVNASGLSNEQLGNHIYPNSQKDAENKMSALDLAIVTRH 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASA 232 + DFPQ + + +G + + N+ + +GA+G+ F+ +G +++ S+ Sbjct: 195 LLQDFPQVLELTKKPAATFRGDRIFSYNFLLEGMPNHRIGANGLFVAFSENNGASLITSS 254 Query: 233 IQGDQSLIAVIL 244 I+ S++++IL Sbjct: 255 IENKMSVVSIIL 266 >gi|126652926|ref|ZP_01725068.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905] gi|126590256|gb|EAZ84378.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905] Length = 439 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 41/285 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D ++G ++ E D AS+TK+MT Y++ + ++ + + Sbjct: 40 LIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAIDAGTVKWDQEYHVTDYTYRMSQN 99 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN ++ + T+ + + + SAN VAIAE++ TE +F++ MN ++ LGL Sbjct: 100 RALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGTETEFLKLMNKKAEELGLE 159 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI---- 190 F+N+ G+ + + A+ +A L++ + D P+ + QI Sbjct: 160 GYKFVNSTGLNNADLFGMQPAGTGPEDENVMPAKYVAKLAYHLLKDHPKVLETSQITKKT 219 Query: 191 --KGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +G E +NW V + G DG+KTG T +G +A + LIAV Sbjct: 220 FREGTE---DAIEMSNWNFMLPGLVFEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIAV 276 Query: 243 ILGALDRN------TRNKVSASLLSMGF--YNKTDRKKINYIIKD 279 ++ A+D + R +A L + GF ++K + NY KD Sbjct: 277 VMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPANYTFKD 321 >gi|291558993|emb|CBL37793.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SSC/2] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 14/155 (9%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FK 97 ++++ D + PAS TK+MTA + L L+ +TI + + +P + K Sbjct: 88 IVSQKVFDQAY-PASTTKIMTALLTLENLN-----LSQVVTIKHDIT-FPDGAAVAIHLK 140 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K LG + THF N +G Sbjct: 141 KGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATNTHFANPNG 200 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + HY+TA D+ + I + ++ +F I G Sbjct: 201 LHLSDHYSTAYDL----YLIFKEVAKHNEFFNIAG 231 >gi|325265499|ref|ZP_08132221.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324029278|gb|EGB90571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 424 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 22/229 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ AS TK+MT + + + L + +T+S A+ P Sbjct: 58 LMDADSGRILFSKNGQQEKAMASTTKIMTCILALEYGR-----LDSEMTVSSYAASQPKV 112 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + KG T L + L L+++S ND AV IAE++ + + F MN +K LG + T+F Sbjct: 113 HLGAYKGETFYLRDLLYSLMLESHNDAAVIIAENIGNSVEGFADMMNAKAKELGCNHTYF 172 Query: 153 MNAHGV---VQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKK-YP 201 + +G+ ++G H+TTA D+A + D PQ + +I + + GK Y Sbjct: 173 ITPNGLDAADENGSHHTTAEDLARIMKYCIMDSPQKEMFLEITRTPSYQFTDCSGKSTYS 232 Query: 202 NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 TN FL GA KTGFT +G+ V S + D++ I +L Sbjct: 233 CTN--HNAFLQMMDGALSGKTGFTGDAGYCYVGSLRRDDRTFIVALLAC 279 >gi|167765525|ref|ZP_02437589.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1] gi|167712710|gb|EDS23289.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1] Length = 311 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 14/155 (9%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FK 97 ++++ D + PAS TK+MTA + L L+ +TI + + +P + K Sbjct: 77 IVSQKVFDQAY-PASTTKIMTALLTLENLN-----LSQVVTIKHDIT-FPDGAAVAIHLK 129 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K LG + THF N +G Sbjct: 130 KGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATNTHFANPNG 189 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + HY+TA D+ + I + ++ +F I G Sbjct: 190 LHLSDHYSTAYDL----YLIFKEVAKHNEFFNIAG 220 >gi|229062677|ref|ZP_04199986.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228716647|gb|EEL68344.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 290 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 17/185 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A ++ Y +D +TG ++ D Sbjct: 14 RTIIMIVMIATLFTGMIFFSYAHRQQVVRADQPNITGQYGMTIDADTGKILYGKREDERS 73 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + + G + D ALK Sbjct: 74 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSAKIKLRAGEKLKRDEALK 128 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + +++KFV+ MN +K +G F NA G G+ + D Sbjct: 129 LMLIISADPIAESIAEHIAGSKEKFVKMMNARAKEIGTKHATFKNASGADALGNKVSPYD 188 Query: 170 MAILS 174 +AI++ Sbjct: 189 IAIIT 193 >gi|65318836|ref|ZP_00391795.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 293 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 56 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 115 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA L + + + +S A S K G + L++ + L+++S Sbjct: 116 TKIMTA-----LLAAESGKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 170 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILS 174 ND A IAE++ + + FV MN +K + + THF N HG+ G HY++A DMA+L+ Sbjct: 171 NDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLT 229 >gi|166033039|ref|ZP_02235868.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC 27755] gi|166027396|gb|EDR46153.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC 27755] Length = 490 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 34/241 (14%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-- 89 +++ TG ++ A+N H + PAS+TK++TA V + LT +T S ++ + Sbjct: 93 VMEVGTGAILYAKNIDAHEY-PASITKVLTALVAL-----ENGQLTDNVTFSHDSVAFLQ 146 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK----FVQHMNNTSKN 144 S+ K+G+ +TLD A+ +++ SAN+ A AI ES+ F++ MN+ K Sbjct: 147 RGDSSVGLKEGNVITLDQAMHAMLLASANEAAYAIGESVGVNAGHDYNWFIEQMNSRCKE 206 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---- 200 LG ++F N +G+ HYT ARDMA++ + P++ Q I + Sbjct: 207 LGGENSNFANTNGLHDPNHYTCARDMALIGREL-FKHPEFFQIVQTLNYTIPASETTEEH 265 Query: 201 -----------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 N+N+ T G KTG+T + ++ A G L+ V+L + Sbjct: 266 VFHQKHKMLQPSNSNYYPYTI----GGKTGYTSDALSTLITMADNGQTQLVCVVLRTHGK 321 Query: 250 N 250 N Sbjct: 322 N 322 >gi|291550390|emb|CBL26652.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14] Length = 343 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 18/232 (7%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TKLMTAY+ F + ++T ++S AS+ N + G T+TL + L L+ Sbjct: 115 PASTTKLMTAYLAFKY-GNMDDIVTVSDSVSSFASDEVVCN--LQPGDTVTLYDLLCGLL 171 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-- 170 ++S ND VAIAE + + + F + MN+ +K LG + +HF+N HG+ HYTTA D+ Sbjct: 172 LRSGNDCGVAIAEHISGSVEAFAELMNSEAKALGATGSHFVNPHGLHNENHYTTAYDLYL 231 Query: 171 ----AILSWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGM-----KT 218 I R + + G + + + P ++ G +G+ KT Sbjct: 232 IFNACIQDQRFMDIISMDSYTMNLTGADGTTRTFDVVPTNYYSSGKINAPEGIRVFGGKT 291 Query: 219 GFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G T +G ++ + +++ I++I+GA D+ + LL G KT+ Sbjct: 292 GTTDEAGCCVILYSEDLEKNPYISIIMGAEDKGFLYQEMNRLLEAGETTKTE 343 >gi|288904540|ref|YP_003429761.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Streptococcus gallolyticus UCN34] gi|325977511|ref|YP_004287227.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731265|emb|CBI12815.1| putative penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Streptococcus gallolyticus UCN34] gi|325177439|emb|CBZ47483.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 412 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 21/234 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG V+ E P AS+TK++T Y+V+ + E K T ++IS A + ++ Sbjct: 37 VEATTGKVLYEKDATTPDGIASMTKILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANS 96 Query: 94 STFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + T++ + +V SAN A+A+AE + TE KFV M + G++ Sbjct: 97 DASNVPMEAREYTVEQLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDA 156 Query: 151 HFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +NA G+ + G +T ARD+AI++ + T++P + + Sbjct: 157 TIVNASGLNNSYLGDNIYPGSSSTDENMMSARDVAIIAQHLITEYPDILKITSQTTADFD 216 Query: 197 GKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N+ + G DG+KTG T +G + VA++ + +I+V++ A Sbjct: 217 GTTMNTYNYMLEGMPYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNA 270 >gi|30023045|ref|NP_834676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29898605|gb|AAP11877.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 273 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 13/224 (5%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG V+ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGVTIDADTGEVLYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNTRAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+AI++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 A G K+G + + +V + + +I V+L + Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSS 252 >gi|294786845|ref|ZP_06752099.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens F0305] gi|294485678|gb|EFG33312.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens F0305] Length = 430 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 21/231 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90 ++ TG V+ + D P AS+TKL+T Y+ + + + K +T + +S + + P Sbjct: 12 IEYQTGRVLLDQDGDEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVATNP 71 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S T+ + + ++ SAN A+++AE + +E KFV M + G++ Sbjct: 72 LTTSADMSRREFTVSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGITDA 131 Query: 151 HFMNAHGV--------VQHGHYT------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 NA G+ + G + +A+DMAI++W + D+P + + Sbjct: 132 RIYNASGLNNSFLGSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQASFG 191 Query: 197 GKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 GK TN + + G DG+KTG T +G A+A+ +IAV+ Sbjct: 192 GKTISTTNHMLPGEEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAVV 242 >gi|302540899|ref|ZP_07293241.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces hygroscopicus ATCC 53653] gi|302458517|gb|EFL21610.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces himastatinicus ATCC 53653] Length = 319 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 36/263 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 LLD + + PD AS+TKLMTA VV L + L +T+ K +Y Sbjct: 57 LLDNSANKKLWSKSPDTKRQMASITKLMTAVVV---LDTRGVNLNKKVTVKKAYLDYIRT 113 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CKTEKKFVQHMNNTS 142 S + K+G +T+ L +++ S D A+A+A++ K K F+ MN + Sbjct: 114 SGGSAADLKQGDKLTVKQLLYGMLLPSGCDAAMALADTFGSGSTTAKRTKSFISKMNKKA 173 Query: 143 KNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 LG++ T + + G+ HG +YTTARD++ L+ R + G E K Sbjct: 174 DALGMTKTQYDSFDGISTHGANYTTARDLSKLA-RHALGNATLRTVVKSVGTEQKAPAAN 232 Query: 200 -------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--- 249 + ++N +G++ GA G+KTG A+G IV +A + ++++ V+LG R Sbjct: 233 GRTRTYYWNSSNKLLGSYNGAIGIKTGTGTAAGKCIVFAAKRNGRTVVGVLLGDSKRYPD 292 Query: 250 ---------NTRNKVSASLLSMG 263 NTR KV+ L G Sbjct: 293 AKKMLDWAFNTRTKVTWRQLPAG 315 >gi|158317707|ref|YP_001510215.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec] gi|158113112|gb|ABW15309.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec] Length = 465 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 20/254 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G ++A + P PAS K++TA V L + +TIS A++ Sbjct: 12 WLVADAGSGAILAAHNAHLPDLPASTMKMLTALTVLPGLPPDRE-----VTISDQAAQVD 66 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ + +++ S ND VA+ E+ E + MN + +LG S T Sbjct: 67 GTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEAAGGREA-VLDRMNRLAASLGASET 125 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNW 205 + G+ G +TTA D+A++ R + P Y I + G+ + N N Sbjct: 126 VAGDPTGLDAPGQHTTAHDLAVIG-RATLNDPIVRGYLTIPRASLPGRGDERFEIANHNT 184 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDRNTRNKVSASLLSM 262 +G++ G G+K G+T A+G V +A + D++LI +L A + R +LL Sbjct: 185 LIGSYEGTIGIKNGYTVAAGATFVGAATRNDRTLIVSLLRTAPAYGTDAR-----ALLDW 239 Query: 263 GFYNKTDRKKINYI 276 GF + D + + + Sbjct: 240 GFAHAADVRPVGRL 253 >gi|160935078|ref|ZP_02082464.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753] gi|156866531|gb|EDO59903.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753] Length = 460 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 37/241 (15%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-ST 95 +TG V+ D PAS TK++T VV +++ T K++ E S+ + Sbjct: 48 DTGTVVFTKNADERIEPASTTKILTYIVVSENVEDLDGTTVTLTQELKDSLEGTGSSIAN 107 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-------------KKFVQHMNNTS 142 G TM++ AL L+V S ND AV +A+ + + +FVQ MN+ + Sbjct: 108 IMVGETMSIYEALNCLMVPSGNDAAVILADYVGGRKNQETGNPEKLSNIDRFVQMMNDKA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKG 197 LG + THF N G+ HYTTARDM I++ D P++M Y + ++ Sbjct: 168 AELGCTGTHFANPDGLHDENHYTTARDMGIMA-EYAMDLPRFMDIVSQTYHIVPATNMQE 226 Query: 198 KK------------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ YP+ + T G+KTG+ +G IV +A + + V +G Sbjct: 227 ERRLDTTNLMMLPGYPDYYYQYVT-----GIKTGWHDQAGDCIVTTAKAEGYAYLCVAMG 281 Query: 246 A 246 + Sbjct: 282 S 282 >gi|73663386|ref|YP_302167.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495901|dbj|BAE19222.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 431 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 28/257 (10%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPP- 91 + TG ++ + + W PAS+TKLMT Y+ + + L + I+ S P Sbjct: 53 SQTGQLLYQYNINKTWYPASMTKLMTMYLTLEAVNKGDLSLNDKVKITDEHYRMSTLPEL 112 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ +A+ + F MN+ +K+LG+ TH Sbjct: 113 SNTKLYPGETYTIKELLQITVSNSSNAAALILAKEVSGNLSDFTDKMNSKAKSLGMKDTH 172 Query: 152 FMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G + + +TA+D ILS D P+ + + + G Sbjct: 173 FVNPTGAENKQLKDFAPKKYKNEDNNTSTAKDFGILSQHAVQDTPKILDFTKQLAPTQHG 232 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N ++ + G DG+KTG + + +N + + + VI+GA D Sbjct: 233 VTYYTFNHSLEGADMSLEGTDGLKTGSSDIADYNHTITTKRDGFRINQVIMGAGDYKNLG 292 Query: 249 -RNTRNKVSASLLSMGF 264 RN + L++M F Sbjct: 293 GEKQRNMIGNGLMNMSF 309 >gi|212638873|ref|YP_002315393.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212560353|gb|ACJ33408.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 345 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 20/227 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG V+ E AS+TK+MTA + K ++ +T+S+ A S Sbjct: 10 LMEQTTGRVLFEKDAHTKRRIASITKIMTAILAIESGKWEEL-----VTVSERAVRTEGS 64 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G + L + + L+++S ND AVAIAE + + + FV MN + +G++ T F Sbjct: 65 SIYLKPGEKIALKHLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNKKAAEIGMTNTEF 124 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW------ 205 N HG+ HY+TA DMA+L R Q+ ++ G ++ P +W Sbjct: 125 ANPHGLDDAENHYSTAYDMALLM-RYAMQNEQFR---EVSGTKLYRAPNPTEDWDRIWRN 180 Query: 206 ----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A + LIAV + A D Sbjct: 181 KNKLLTHLYKYCTGGKTGYTKRAKRTLVTTASKDGLDLIAVTIDAGD 227 >gi|295105683|emb|CBL03227.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii SL3/3] Length = 290 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 16/228 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +G V+A+ D PASLTK+MT + + +T P I S Sbjct: 40 LLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIETEPDLDKQVTLPEDIFPALQTEKAS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F T+T+ + L ++ S + A+A+ + +E+ F MN + LG+ THF Sbjct: 100 MAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELGMKNTHF 159 Query: 153 MNAHGVVQHGHYTTARDMAIL------SWRIKTDFPQYMHYFQIKGLEIKG--------K 198 NA G+ HY++A DMA L + +T F + +G Sbjct: 160 TNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTEHYTTTATAQHPEGVSLTSTLLG 219 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K T GT + +G KTG+T A+G + + A + I V L A Sbjct: 220 KLDGTELPTGTRI--EGGKTGYTAAAGLCLASLATVNGKEYILVTLAA 265 >gi|326201438|ref|ZP_08191309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] gi|325988038|gb|EGD48863.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium papyrosolvens DSM 2782] Length = 298 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 26/229 (11%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 TLLD N+G I PASLTK+MTA V + + K + + + E Sbjct: 59 TLLDKNSGVKIY---------PASLTKIMTAIVALENIHDLKEEIKLTNSTFRGLYEADA 109 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F+ G + + L +++ S + V +A + +++ FV+ MN + LG+ TH Sbjct: 110 SMAGFQPGEQVRALDLLYGVLLPSGAECCVGLANKVAGSQQNFVKMMNEKAAKLGMKNTH 169 Query: 152 FMNAHGVVQHGHYTTARDMAI-LSWRIKTDF-------------PQYMHYFQIKGLEIKG 197 F N G+ HYTT D+AI LS+ +K D P H I Sbjct: 170 FENVTGLQNENHYTTVADLAILLSYSLKNDTFREIFTSARYSTKPTNKHTDGITFNSTMF 229 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +K N G LG KTG+T A+G + + + G Q + V GA Sbjct: 230 EKLNNKKITGGEILGG---KTGYTSAAGLCLASLSKVGTQEYVFVTAGA 275 >gi|262037478|ref|ZP_06010938.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii F0264] gi|261748513|gb|EEY35892.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii F0264] Length = 356 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 20/285 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP-ASLTKL 59 +R+ +I+ + ++S+ F F N Y +L +T IA + P AS+TK+ Sbjct: 4 LRKIFIILTIFVISS-FAFAE--GENYFDYKAILIGDTNGNIAREENSYAVRPLASVTKV 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT + + + L + +S+ A+ P G+ T+ + LK ++S+N+ Sbjct: 61 MTIMLTLDKVHSGEISLNDRVVVSEAAASVP-YGIKLVAGNEYTVRDLLKATAIRSSNNA 119 Query: 120 AVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDM 170 A A+AE + +FV MNN ++ G + F + HG+ + G+ ARD+ Sbjct: 120 AYALAEYVSNGNVYEFVNSMNNKARQSGWDSLRFCSPHGLPPSYTGSCMDQGN---ARDL 176 Query: 171 AILSWRIKTDFPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ + T + +YM+ + + ++ K TN +G G DG+KTG+ A+G NI Sbjct: 177 YKMAMKAVT-YKEYMNIAKESVDFIDHGNIKLTATNHLLGKVPGVDGLKTGYHNAAGSNI 235 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + +A + + +I VILG+ R+ + ++ F N + KI Sbjct: 236 ILTAKRNGERMILVILGSTKAKNRDAIGEKEINDYFINGSKSFKI 280 >gi|212695505|ref|ZP_03303633.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM 7454] gi|212677505|gb|EEB37112.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM 7454] Length = 408 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + + +G + + D + AS++KLMT + + K T + +K A + Sbjct: 46 YLIGNQESGDIFYQKNADKTYPIASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLT 105 Query: 91 -PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P S+ K+G T+ + LIV S ND A +A + +E F + MN ++ L L Sbjct: 106 GPEYSSLGIKEGEEYTIKELITGLIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNL 165 Query: 148 SATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 + + NA GV + ++A+D+ L+ I +P + Y + G++ K + Sbjct: 166 KSQKYYNASGVNTEDDTQNSSSAKDLFELTRIILKKYPDILEYSNMDGIDDNKKDIHKKS 225 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVS 256 T G G DG+KTG T +G ++ + G D I++++GA D TR+ Sbjct: 226 TIPLKGDIKGVDGLKTGTTEEAGSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAM 285 Query: 257 ASLL 260 L+ Sbjct: 286 TDLI 289 >gi|160945058|ref|ZP_02092284.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii M21/2] gi|158442789|gb|EDP19794.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii M21/2] Length = 325 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 16/228 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +G V+A+ D PASLTK+MT + + +T P I S Sbjct: 75 LLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIETEPDLDKQVTLPEDIFPALQTEKAS 134 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F T+T+ + L ++ S + A+A+ + +E+ F MN + LG+ THF Sbjct: 135 MAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELGMKNTHF 194 Query: 153 MNAHGVVQHGHYTTARDMAIL------SWRIKTDFPQYMHYFQIKGLEIKG--------K 198 NA G+ HY++A DMA L + +T F + +G Sbjct: 195 TNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTKHYTTTATAQHPEGVSLTSTLLG 254 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K T GT + +G KTG+T A+G + + A + I V L A Sbjct: 255 KLDGTELPTGTQI--EGGKTGYTAAAGLCLASLATVNGKEYILVTLAA 300 >gi|294790789|ref|ZP_06755947.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata F0304] gi|294458686|gb|EFG27039.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata F0304] Length = 466 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 27/234 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D TG ++ Y D P AS+TK++T Y+V+ + + K +T + IS +S Sbjct: 39 MDYATGRILLNQYGDRPAGIASMTKVITLYLVYKAIDQGKISWSTKVPISSYSSRISTNW 98 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + K + T+ + + VKSAN A+++AE + +E +FV M + G++ Sbjct: 99 LTTTVPMKKKSYTVRDLVTAAFVKSANSAAISLAEKIAGSEPRFVDMMRKQVRQWGITDA 158 Query: 151 HFMNAHGV--------VQHG------HYTTARDMAILSWRIKTDFPQYMH-----YFQIK 191 N+ G+ + G + +ARD+A+ W D+PQ + + Sbjct: 159 KLYNSSGLNNSFLDKNIYPGSSKKAENMMSARDIALAVWHFIHDYPQVLSMTSKAHATFD 218 Query: 192 GLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 G+ + + P N + G DG KTG T +G A+A++ +I VI Sbjct: 219 GMPLTSTDHMLPGLN---SAYPGLDGFKTGTTEIAGACFAATAVRHGMRVITVI 269 >gi|229169729|ref|ZP_04297429.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228613768|gb|EEK70893.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 301 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 17/185 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ D Sbjct: 25 RTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGKILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKEDEE-----ITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN+ +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNSRAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILS 174 +AI++ Sbjct: 200 IAIIT 204 >gi|229193289|ref|ZP_04320240.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228590266|gb|EEK48134.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] Length = 279 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQSVRANQPNITGQYGVTIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS 258 >gi|258513818|ref|YP_003190040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] gi|257777523|gb|ACV61417.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] Length = 373 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA V L + K +T ++ + SE S + F+ G + + L + Sbjct: 114 PASLTKMMTAIVAIENLPDLKKEITLTDSVFRGLSEADASMAGFRPGENVRAIDLLYGAL 173 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S + V +A+ + +EK FV MN + +LG+ T+F N+ G+ HYTT +D+A+ Sbjct: 174 LPSGAESCVELADYIAGSEKDFVGMMNQKAADLGMYNTYFENSTGLQNENHYTTVKDLAV 233 Query: 173 -LSWRIKTDF-------------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218 LS+ ++ D P H I + N + G LG KT Sbjct: 234 LLSYALQNDTFREIFTSTRHSTPPTNKHPDGITFYSTMFDELNNRSITDGKILGG---KT 290 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 G+T +G + + A G Q + GA Sbjct: 291 GYTAEAGLCLASLAQVGKQEYSLISAGA 318 >gi|307327153|ref|ZP_07606342.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] gi|306887234|gb|EFN18231.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] Length = 311 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 42/225 (18%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALK 109 AS TK+MTA VV L+ + L +T+ + +Y S + + G +T++ L Sbjct: 70 ASTTKIMTALVV---LETRGLDLNQQVTVKQEYRDYVTKAGASTADLQTGDKLTVNQLLY 126 Query: 110 LLIVKSANDIAVAIAESL------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-VQHG 162 L++ S D A+A+A++ + K F+ MN +K+LGL+ T++ + GV Sbjct: 127 ALMLPSGCDAAMALADTFGTGDTTAERTKSFISKMNAKAKDLGLANTNYDSFDGVSADSD 186 Query: 163 HYTTARDMAILSWR---------------IKTDFPQ---YMHYFQIKGLEIKGKKYPNTN 204 +Y+T RD+A L+ R K + P + Y+ + NTN Sbjct: 187 NYSTPRDVAQLTRRAMDNATFDTVVKSVSTKQEAPAANGHTRYYS----------WDNTN 236 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 +G++ GA G+KTG T +G +V +A +GD+ ++ V+L DR Sbjct: 237 QLLGSYQGAIGVKTGTTTPAGPCLVFAAKRGDKEVVGVVLNDADR 281 >gi|295107786|emb|CBL21739.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 307 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 18/241 (7%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L I+ N PY L+ G VI E + PAS+TK+MT V LK+ +T Sbjct: 43 LDISGINS-PYAVLMQVRGGRVIGEINGEEQMYPASMTKIMTTIVAIENLKDLDQEITLT 101 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + + E + + F+ G T+ + L +++ S + +A+A+++ +E FV MN Sbjct: 102 NEMFEGLYEQDATQAGFQPGETVRAIDLLYGVMLPSGAECCIALADTIAGSEADFVTLMN 161 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-LSWRIKTD-FPQYMH--YFQIKGLEI 195 + LG++ T+F + G+ HY+T +D+A+ L + +K D F + + Y+ G I Sbjct: 162 EKAAKLGMTGTNFCDTTGLHDANHYSTVKDIAVLLKYALKDDTFREIIESPYYSTPGTNI 221 Query: 196 KG----------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K +T G +G KTG+T +G + + A I V G Sbjct: 222 HPDGITFYSTMFKNLSDTAVTDGKIMGG---KTGYTGEAGHCLASFAEIDGTEYILVTGG 278 Query: 246 A 246 A Sbjct: 279 A 279 >gi|325957359|ref|YP_004292771.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus 30SC] gi|325333924|gb|ADZ07832.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus 30SC] Length = 432 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 32/243 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNAS 87 +D+++G ++ D AS+TKL+T Y+ +K KK T PI N + Sbjct: 54 IDSDSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNT 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 114 EY--SNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGI 171 Query: 148 SATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ + +A+DMAI+ + DFP+ + +I L Sbjct: 172 EDAKIYTACGLPNGNLGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHL 231 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 232 NFKDGNKVTKMANFNWMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVV 291 Query: 244 LGA 246 +GA Sbjct: 292 MGA 294 >gi|257440859|ref|ZP_05616614.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257196699|gb|EEU94983.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 313 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 12/152 (7%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P+ LL ++G V+AE D PAS+TK+MTA + E L TP+T+ + Sbjct: 60 PHAILLRADSGEVLAEKDADSTIYPASMTKMMTALLAI----EANPDLDTPVTLPEEI-- 113 Query: 89 YP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 +P S + F+ G T T+ + L ++ S + A+A + +E+ F MN + Sbjct: 114 FPALQAQNASLAGFQAGETATVRDLLYGAMLPSGAECCEALAREVSGSEEAFAARMNQKA 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 LG++ THF N G+ H +T RDMA L+ Sbjct: 174 AELGMTGTHFCNPTGLHDPEHVSTVRDMARLT 205 >gi|288921678|ref|ZP_06415947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp. EUN1f] gi|288346947|gb|EFC81255.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp. EUN1f] Length = 572 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 14/253 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G ++A + P+ P PAS K++TA V L + +TIS A+ Sbjct: 99 WMVADAISGAILAAHNPNLPDLPASTMKMLTALTVLPSLPPDRV-----VTISDEAARVD 153 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ + +++ S ND VA+ E+ ++ MN + +LG T Sbjct: 154 GTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEA-AGGRDAVLERMNRLAASLGAHDT 212 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNW 205 + G+ G +TTA D+A++ R + P Y I + G+ + N N Sbjct: 213 VAGDPTGLDAPGQHTTAHDLAVIG-RAVLNNPTVRAYLTIPRAVLPGRGDERFEIANHNT 271 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +GT+ G G+K G+T A+G V +A++ ++LI +L T + +LL GF Sbjct: 272 LLGTYEGTIGIKNGYTIAAGATFVGAAVRDGRTLIVSLL--RTAPTYATDAKALLDWGFA 329 Query: 266 NKTDRKKINYIIK 278 + D + + + + Sbjct: 330 HAADVRPLGRLAE 342 >gi|154686564|ref|YP_001421725.1| DacB [Bacillus amyloliquefaciens FZB42] gi|154352415|gb|ABS74494.1| DacB [Bacillus amyloliquefaciens FZB42] Length = 383 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 8/219 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ H AS+TK+MTA + K + +T+S NA + S Sbjct: 39 IIDGASGRVLFAKDEHHKRRIASITKIMTAVLAIESGK-----MEETVTVSPNAVKTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G + L + + L+++S ND A AIAE + + FV MN ++ +G+ T F Sbjct: 94 AIYLQPGQKVKLKDLVYGLMLRSGNDAAAAIAEYVGGSLDGFVFMMNKKAEQIGMENTKF 153 Query: 153 MNAHGVVQHGH-YTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209 N HG+ H + Y+TA DMA+L+ + +K + + ++ E + + N N G Sbjct: 154 QNPHGLDDHENLYSTAYDMALLTKYAMKIKEYRTVSGTKVYKAETMDRVWKNKNKLLTGL 213 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G KTG+T + +V++A + LIAV + D Sbjct: 214 YRYSTGGKTGYTKIAKRTLVSTASKDGTDLIAVTINDPD 252 >gi|75760329|ref|ZP_00740377.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900160|ref|YP_002448571.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228903511|ref|ZP_04067635.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|74492183|gb|EAO55351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545764|gb|ACK98158.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228856132|gb|EEN00668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 301 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPKITGQYGVTIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 200 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 258 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 259 KYTVVTVDEKDGKRVINVVLSS 280 >gi|323486820|ref|ZP_08092138.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323399833|gb|EGA92213.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14163] Length = 532 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 22/249 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G VI + PAS+TK++TA +V E+ +M T +T S+NA S Sbjct: 42 IMDANSGAVIYGKNIHATYAPASITKVLTALIVL----ERCSMDET-VTFSQNAVYNVES 96 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 NS+ + G T ++ + L L++KSAN+ A A+AE + T ++F MN + LG Sbjct: 97 NSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELGCQD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMH--YFQI-------KGLEIK-G 197 +HF N G+ HY +A DMA+++ DF + + Y+++ +G I G Sbjct: 157 SHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATTYYELPPNKKNPEGQGISPG 216 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K NW G KTG+T + +V A QG+ + VIL + T+ + Sbjct: 217 NKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGETKFVTVILHS--SGTQYSDTK 274 Query: 258 SLLSMGFYN 266 +LL+ GF N Sbjct: 275 ALLNFGFNN 283 >gi|194396776|ref|YP_002037508.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae G54] gi|194356443|gb|ACF54891.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae G54] Length = 413 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 31/292 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y Sbjct: 5 FLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVY 64 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM-------TLDNALKLLIVKSA 116 +V+ L+ L+TP+ I S+YP +T + S + T++ L+ +V SA Sbjct: 65 LVYEALENGSITLSTPVDI----SDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162 N A+A+AE + +EK FV M G+ +N G+ Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +A D+AI++ + +PQ + + +TN+ + G DG+KT Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGLKT 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYNKT 268 G T +G + V + ++ +I V+L A D N + +A+ M + + T Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISST 292 >gi|269127199|ref|YP_003300569.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermomonospora curvata DSM 43183] gi|268312157|gb|ACY98531.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermomonospora curvata DSM 43183] Length = 305 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 S+TK MTA VV + L ITI + A + S + + G +T L+ Sbjct: 65 GSITKAMTAVVVL-----RSGKLDRKITIKQKHINYAVRHGGSMAHLRPGDKLTARQLLR 119 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHGHYTT 166 L++ S D A +A++ + FV+ MN T++ L + TH+ N G+ Y+T Sbjct: 120 ALLLPSGCDAAYVLADAYGPGWRNFVKKMNATARALNMKKTHYANFDGLPWPTPTAGYST 179 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGF 220 A D L+ P++ + + +K + NTN +G+F G +G+KTG+ Sbjct: 180 ALDQTKLANYAFKKLPEFRKIVRTRTYRLKAGGGHRAYTWHNTNRLLGSFKGVNGVKTGY 239 Query: 221 TCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGF 264 T A+G++++ +A +G ++LI +L + D R +A +LS GF Sbjct: 240 TSAAGYSLLFAATRGKRTLIGAVLNSSTTDSTARFTDAARILSWGF 285 >gi|290891993|ref|ZP_06554990.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290558587|gb|EFD92104.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 272 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MN + LG+S+ T+F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNRQATKLGMSSRTNFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + +G K +TN +G+ G D Sbjct: 160 LDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTPEKRFKDTEKLMEVGF 269 >gi|315038949|ref|YP_004032517.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL 1112] gi|312277082|gb|ADQ59722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL 1112] gi|327184084|gb|AEA32531.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL 1118] Length = 432 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 32/243 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNAS 87 +D+++G ++ D AS+TKL+T Y+ +K KK T PI N + Sbjct: 54 IDSDSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNT 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 114 EY--SNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGI 171 Query: 148 SATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ + +A+DMAI+ + DFP+ + +I L Sbjct: 172 EDAKIYTACGLPNGNLGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHL 231 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 232 NFKDGNKVTKMANFNWMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVV 291 Query: 244 LGA 246 +GA Sbjct: 292 MGA 294 >gi|229072497|ref|ZP_04205699.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|228710473|gb|EEL62446.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] Length = 273 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGVTIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+AI++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|319945575|ref|ZP_08019827.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] gi|319748174|gb|EFW00416.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis ATCC 700641] Length = 413 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 32/238 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------- 86 +D TG ++ E D ++ L+T Y+V+ +++ K LT + IS A Sbjct: 36 IDGTTGKILYEKNSDEKKEVGGISNLLTTYLVYEAIQQGKISLTDDVDISDKAYQLTAIE 95 Query: 87 --SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S P +K + + L L+V +AN A+A+AE + +E+KFV M K Sbjct: 96 GISNVPMEARKYK------VKDLLTALLVSNANSAAIALAEKVAGSEEKFVLLMKAKLKE 149 Query: 145 LGLSATHFMNAHGVVQH-------------GHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 G++ +NA G+ Q + +A D+A+++ + D+P+ + Sbjct: 150 WGITDATIVNASGLNQSIIDGDEENKKKNNENKLSAYDVAVIAKHLLEDYPEVTKITSLS 209 Query: 192 GLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 E G + ++N+ + G DG+KTG + G + VAS Q +I V++G Sbjct: 210 HAEFAGIQLESSNYMLENMPNYRAGVDGLKTGNSEKGGISFVASTNQNGIRMITVVIG 267 >gi|42781623|ref|NP_978870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|42737546|gb|AAS41478.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] Length = 253 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 16/214 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D ++G V+ + P A+L+KLMT Y+ L E L + IS +E Sbjct: 40 LIDAHSGEVVYTKNEETPIQSATLSKLMTEYIALEQLNEGNIQLDEVVKISNEVFQAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA- 149 P T K +T+ + L L++ N A+A+AE + E F Q MN +K L LS Sbjct: 100 PIQVTSKDKTTV--RDLLHALLLTGNNRSALALAEHIAGNEDNFTQLMNEKAKRLKLSQP 157 Query: 150 THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTN 204 + F+NA G+ TTA ++A L+ + TDFP ++ ++ + K K NTN Sbjct: 158 SPFLNATGMNNDTNKLSTTTAIEVAKLATELVTDFPDVLNVTKLTSYQFSFKDTKVFNTN 217 Query: 205 WAVGT------FLGADGMKTGFTCASGFNIVASA 232 + + G DG++T F+ ++ V++A Sbjct: 218 KMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTA 251 >gi|56967192|pdb|1XP4|A Chain A, Crystal Structure Of A Peptidoglycan Synthesis Regulatory Factor (Pbp3) From Streptococcus Pneumoniae gi|56967193|pdb|1XP4|B Chain B, Crystal Structure Of A Peptidoglycan Synthesis Regulatory Factor (Pbp3) From Streptococcus Pneumoniae gi|56967194|pdb|1XP4|C Chain C, Crystal Structure Of A Peptidoglycan Synthesis Regulatory Factor (Pbp3) From Streptococcus Pneumoniae gi|56967195|pdb|1XP4|D Chain D, Crystal Structure Of A Peptidoglycan Synthesis Regulatory Factor (Pbp3) From Streptococcus Pneumoniae Length = 379 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 29/238 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 20 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 75 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV G Sbjct: 76 TTNSEASNIPXEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDXXRAKLLEWG 135 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 136 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 195 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 196 STFAGXTITSTNYXLEGXPAYRGGFDGLKTGTTDKAGESFVGTTVEKGXRVITVVLNA 253 >gi|229032648|ref|ZP_04188611.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228728647|gb|EEL79660.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 301 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + ITI++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKEDE-----EITITENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 200 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 258 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 259 KYTVVTVDEKDGKRVINVVLSS----TRTQLYPDTKKMAHY 295 >gi|228477772|ref|ZP_04062400.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius SK126] gi|228250464|gb|EEK09678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius SK126] Length = 417 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 34/274 (12%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++IA+ +L P L+ +T+ + ++ TG V+ E P AS+TK Sbjct: 7 QHIIMIALILLGLATPALAQEQTDDFNVSAKHAIAIEATTGKVLYEKDATTPDGVASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + I S+YP + + + S + LD+ L Sbjct: 67 ILTAYMVYKAVDQGKITWDTEVDI----SDYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + +E FV M K ++ NA G+ + Y Sbjct: 123 LISSANSAAIALAEKISGSESAFVDAMTAQLKEWSITDAKLYNASGLNNKYLGDNRYPGS 182 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + + +G K N+ + G Sbjct: 183 KPDDENSMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREG 242 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T +G + VA + + SLI V++ A Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNA 276 >gi|326942829|gb|AEA18725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 280 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D TG ++ D Sbjct: 4 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERS 63 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 64 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 118 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 119 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 178 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 179 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 237 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 238 KYTVVTVDEKDGKRVINVVLSS 259 >gi|49481069|ref|YP_039030.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332625|gb|AAT63271.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 279 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|163942729|ref|YP_001647613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163864926|gb|ABY45985.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 279 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 17/185 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ D Sbjct: 3 RTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIGKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILS 174 +AI++ Sbjct: 178 IAIIT 182 >gi|300763430|ref|ZP_07073428.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] gi|300515707|gb|EFK42756.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] Length = 272 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MN + LG+S+ T+F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKKMNRQATKLGMSSRTNFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + +G K +TN +G+ G D Sbjct: 160 LDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|301056499|ref|YP_003794710.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI] gi|300378668|gb|ADK07572.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 279 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRIINVVLSS----TRKQLYPDTKKMAHY 273 >gi|306832771|ref|ZP_07465907.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC 700338] gi|304425120|gb|EFM28250.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC 700338] Length = 416 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 21/234 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 ++ TG V+ E P AS+TK++T Y+V+ + E K T ++IS N + Sbjct: 41 VEATTGKVLYEKDATTPDGIASMTKILTVYLVYKAIDEGKISWDTKVSISDYAYNLTANS 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +++ + T++ + +V SAN A+A+AE + TE KFV M + G++ Sbjct: 101 DASNVPMEAREYTVEQLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEVWGITDA 160 Query: 151 HFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +NA G+ + G +T ARD+AI++ + T++P + + Sbjct: 161 TIVNASGLNNSYLGDNIYPGSSSTDENMMSARDVAIIAQHLITEYPDILKITSQTTADFD 220 Query: 197 GKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N+ + G DG+KTG T +G + VA++ + +I+V++ A Sbjct: 221 GTTMNTYNYMLEGMPYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNA 274 >gi|254851885|ref|ZP_05241233.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|258605180|gb|EEW17788.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] Length = 272 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MN + LG+S+ T+F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKKMNRQATKLGMSSRTNFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + +G K +TN +G+ G D Sbjct: 160 LDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|293400703|ref|ZP_06644848.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305729|gb|EFE46973.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 332 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 27/230 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++ VI E + AS++K+MTA + +K L K + Sbjct: 26 YCVMSDADNTVIEEKDMHKVQSVASISKVMTAILAL-----EKGDLNATWKTGKELKQAY 80 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G ++L + L L+++S ND A+ IA + KT+KKFVQ MN +K +G+ T Sbjct: 81 GSMIYLKEGQQVSLRSLLYGLMLRSGNDAALEIALHIGKTQKKFVQMMNEKAKEIGMLDT 140 Query: 151 HFMNAHGVVQH--GHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-- 205 HF N G+ + G+ ++A DMA+L S+ +K P + EI G KY + W Sbjct: 141 HFANPSGLDEEDGGNLSSAYDMALLMSYAMKN--PAFR--------EISGTKYYTSEWNY 190 Query: 206 -------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + A KTGFT +G ++++A + + V LG D Sbjct: 191 RWRNKNKLLFEYPFAIAGKTGFTKKAGRTLISAAKHENVENVIVTLGMGD 240 >gi|229014198|ref|ZP_04171319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|228747152|gb|EEL97034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 301 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ D Sbjct: 25 RTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIGKMMTTLLLLENVKEDEE-----ITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 200 IAIIT-KESLKYPIVLEYM 217 >gi|300119675|ref|ZP_07057217.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] gi|298722970|gb|EFI63870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] Length = 279 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|222152531|ref|YP_002561706.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] gi|222113342|emb|CAR40942.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] Length = 416 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 38/272 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 D +TG V+ + ASL+K++T Y+V+ +K K TP+TIS YP Sbjct: 39 FDVSTGKVLYQKNEKEVLPVASLSKVLTTYLVYKEVKSGKLSWDTPVTIS----NYPYEL 94 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T S + LD L ++V +AN A+A+AE + TE +FV M K G Sbjct: 95 TTNYSISNVPLDARQYTVKELLNAVLVTNANSAAIALAEKISGTEPRFVDLMTKQLKEWG 154 Query: 147 LSATHFMNAHGV---VQHGH---YTT--------ARDMAILSWRIKTDFPQYMHYFQIKG 192 + +NA G+ + H Y+T A D+AI+S + ++FP+ + + Q Sbjct: 155 IKDAKLVNATGLSNAILGDHIYPYSTSDDENQMSALDLAIVSNHLLSEFPEVLKHTQKAS 214 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 +K + N+ + G +G+ ++ SG + +AS+ + + S++ V+L A Sbjct: 215 ATFSNQKIFSYNYMLKGMPNYRDGVNGLFVAYSEKSGASFLASSTENNMSVVTVVLNAEQ 274 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 N +G + +T+ +NYI F Sbjct: 275 SNEE--------ELGHFRETNT-LLNYISNHF 297 >gi|217965981|ref|YP_002351659.1| beta-lactamase [Listeria monocytogenes HCC23] gi|217335251|gb|ACK41045.1| beta-lactamase [Listeria monocytogenes HCC23] gi|307572402|emb|CAR85581.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes L99] Length = 272 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 114/230 (49%), Gaps = 6/230 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA+++ + + + + + S + Sbjct: 42 GKPLYEQNADKVMPIASLSKLMTAFLILEAVDNNELSWDETLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MN + LG+S+ T+F++A G Sbjct: 102 KRTWSVRDLYNAMLTMSANDAAETLGDRLDGAD--FPKEMNRQATKLGMSSRTNFVSASG 159 Query: 158 VVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGAD 214 + G +T +D+ +LS ++ + P+ + + +G K +TN +G+ G D Sbjct: 160 LDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLD 219 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G+KTGFT +G+ + +A +G + +I+++L A R K + L+ +GF Sbjct: 220 GLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGF 269 >gi|196047530|ref|ZP_03114740.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|196021644|gb|EDX60341.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] Length = 279 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 127/281 (45%), Gaps = 30/281 (10%) Query: 5 LVIIAMAMLSNIFP---FLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 L I+ + M++ +F F S A+ + Y +D +TG ++ D Sbjct: 3 LTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|322517678|ref|ZP_08070541.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] gi|322123666|gb|EFX95258.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] Length = 422 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 34/274 (12%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 Q +++I + ++ P L+ +T+ + ++T TG V+ E P AS+TK Sbjct: 12 QHIIMITLILIGLTTPALAQDQTDDFNVAAKHAIAIETTTGKVLYEKDATTPNGVASMTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA-------LKLL 111 ++TAY+V+ + + K T + N S+YP + + + S + LD+ L Sbjct: 72 ILTAYMVYKAVDQGKINWDTEV----NISDYPFNLTVDSEVSNIPLDSRKYTVKQLLDAT 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHY--- 164 ++ SAN A+A+AE + TE FV M K G++ NA G+ + Y Sbjct: 128 LISSANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187 Query: 165 -------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWAV----GTFLG 212 +A D+AI++ + D+PQ + + + + K N+ + G Sbjct: 188 KPDDENTMSALDVAIIADHLIKDYPQVLEITKQTETDFERDNKLTTHNYMLEGQDNYREG 247 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T +G + VA + + SLI V++ A Sbjct: 248 VDGLKTGTTELAGASFVAHSNEHGMSLITVVMNA 281 >gi|225573149|ref|ZP_03781904.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM 10507] gi|225039504|gb|EEG49750.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM 10507] Length = 412 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 35/256 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ E + PAS+TKL+TA VV ++ L + S +A S Sbjct: 56 VMDVGTQTVLYEKNGEELHYPASITKLLTALVVM-----ERCELDETVIFSHDAVYEVES 110 Query: 93 ----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 N F+ G +T+++ L +I++S+N A A+AE + + FV MN ++ LG Sbjct: 111 GSGNNQGFEAGDKLTVEDCLYAMILESSNPAANALAEHTSGSLEAFVNEMNQKAEELGCE 170 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRI-KTD------------FPQYM-----HYFQI 190 ++F N G+ TTA DM ++S + K D P + + + Sbjct: 171 NSNFENPSGLNDEAQKTTAYDMGLISSEVFKNDTLKEICSAETYQLPPTLNQTEGYLLHM 230 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + + G++ + W + KTG+T +G +V A + D+ L++V++ + Sbjct: 231 EHRLVNGEEQKDDRWDLV------AGKTGYTTMAGNTLVTYAEEDDKQLVSVVMQS--EQ 282 Query: 251 TRNKVSASLLSMGFYN 266 T + + +LL+ GF N Sbjct: 283 THYEDTNNLLNYGFDN 298 >gi|228942179|ref|ZP_04104719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975108|ref|ZP_04135667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981748|ref|ZP_04142043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228777860|gb|EEM26132.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228784629|gb|EEM32649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817513|gb|EEM63598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 301 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +AI++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 200 IAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 258 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 259 KYTVVTVDEKDGKRVINVVLSS 280 >gi|317498476|ref|ZP_07956770.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894169|gb|EFV16357.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 322 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 14/155 (9%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FK 97 ++++ D + PAS TK+MTA + L L+ +TI + + +P + K Sbjct: 88 IVSQKVFDQAY-PASTTKIMTALLTLENLN-----LSQVVTIKHDIT-FPDGAAVAIHLK 140 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K LG THF N +G Sbjct: 141 KGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGAINTHFANPNG 200 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + HY+TA D+ + I + ++ +F I G Sbjct: 201 LHLSDHYSTAYDL----YLIFKEVAKHNEFFNIAG 231 >gi|52839376|emb|CAH57481.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|52839378|emb|CAH57482.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 389 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 31/262 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 11 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 66 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T + S + T++ L+ +V SAN A+A+AE + +EK FV M G Sbjct: 67 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 126 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + +A D+AI++ + +PQ + + Sbjct: 127 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 186 Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 +TN+ + G DG+KTG T +G + V + ++ +I V+L A Sbjct: 187 STFARMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 246 Query: 247 LDRNTRNKVSASLLSMGFYNKT 268 D N + +A+ M + + T Sbjct: 247 QDNNPYARFTATSSLMDYISST 268 >gi|299542091|ref|ZP_07052407.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus fusiformis ZC1] gi|298725406|gb|EFI66054.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus fusiformis ZC1] Length = 443 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 52/338 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASE 88 L+D ++G ++ E D AS+TK+MT Y++ + K ++ + + Sbjct: 44 LIDADSGKILFEQNADTSLGIASMTKMMTEYLLLDAIDAGKVKWDQEYHVTDYTYRMSQN 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN ++ + T+ + + + SAN VAIAE++ +E +F++ MN ++ LGL Sbjct: 104 RALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGSETEFLKLMNKKAEELGLE 163 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI---- 190 F+NA G+ + + A+ +A L++ + D P+ + +I Sbjct: 164 GYKFVNATGLNNADLFGMHPSGTGPEDENVMPAKSVAKLAYHLLKDHPKVLETSKIAKKT 223 Query: 191 --KGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +G E K +NW V + G DG+KTG T +G +A + LIAV Sbjct: 224 FREGTEDAIKM---SNWNFMLPGLVYEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIAV 280 Query: 243 ILGALDR------NTRNKVSASLLSMGF--YNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 ++ A+D R +A L + GF ++K + NY K+ Q + Sbjct: 281 VMKAVDAKGQGSYEARFDATAKLFNYGFSQFSKQEILPGNYTFKN---QKTVKVTKGKED 337 Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332 +V KE I++ M ++ DK D K TL+ +K Sbjct: 338 KVSIAVKEPISF---MIKSSDK-----DLYKPTLVLDK 367 >gi|19745420|ref|NP_606556.1| penicillin-binding protein [Streptococcus pyogenes MGAS8232] gi|139473105|ref|YP_001127820.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] gi|19747531|gb|AAL97055.1| putative penicillin-binding protein [Streptococcus pyogenes MGAS8232] gi|134271351|emb|CAM29569.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str. Manfredo] Length = 410 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 DGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|30265054|ref|NP_847431.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47530558|ref|YP_021907.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47567050|ref|ZP_00237767.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|49187867|ref|YP_031120.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|52140522|ref|YP_086306.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] gi|65317000|ref|ZP_00389959.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] gi|118480099|ref|YP_897250.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|165870851|ref|ZP_02215503.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167634882|ref|ZP_02393200.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|167639927|ref|ZP_02398195.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|170685975|ref|ZP_02877198.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|170706954|ref|ZP_02897411.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|177652350|ref|ZP_02934853.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190567200|ref|ZP_03020115.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|196032895|ref|ZP_03100308.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196040599|ref|ZP_03107899.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|218906208|ref|YP_002454042.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|227817784|ref|YP_002817793.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|228917642|ref|ZP_04081184.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930039|ref|ZP_04093049.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948739|ref|ZP_04111017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124549|ref|ZP_04253734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|229601870|ref|YP_002869251.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|254687345|ref|ZP_05151202.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|254725358|ref|ZP_05187141.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254735318|ref|ZP_05193026.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] gi|254740584|ref|ZP_05198275.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|254753154|ref|ZP_05205190.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254761497|ref|ZP_05213518.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|30259731|gb|AAP28917.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47505706|gb|AAT34382.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556368|gb|EAL14702.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|49181794|gb|AAT57170.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|51973991|gb|AAU15541.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] gi|118419324|gb|ABK87743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|164713360|gb|EDR18885.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0488] gi|167512008|gb|EDR87386.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0193] gi|167529632|gb|EDR92381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0442] gi|170128057|gb|EDS96927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|170670439|gb|EDT21179.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0465] gi|172082356|gb|EDT67422.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0174] gi|190561704|gb|EDV15674.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis Tsiankovskii-I] gi|195994324|gb|EDX58279.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196028731|gb|EDX67338.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|218535970|gb|ACK88368.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|227003439|gb|ACP13182.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] gi|228658889|gb|EEL14544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|228811046|gb|EEM57389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829538|gb|EEM75165.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842019|gb|EEM87124.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266278|gb|ACQ47915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 279 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|228923740|ref|ZP_04087018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835869|gb|EEM81232.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 290 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 23/262 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 14 RTIVMIVMIATLFTGMIFFSYAQRQQAVRVNQPNITGQYAITIDADTGEILYGKREDERS 73 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 74 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 128 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 129 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYD 188 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 189 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 247 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 + +V + + +I V+L + Sbjct: 248 KYTVVTVDEKDGKRVINVVLSS 269 >gi|306828006|ref|ZP_07461272.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] gi|304429787|gb|EFM32830.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] Length = 410 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 DGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|25010218|ref|NP_734613.1| hypothetical protein gbs0143 [Streptococcus agalactiae NEM316] gi|23094570|emb|CAD45788.1| Unknown [Streptococcus agalactiae NEM316] Length = 411 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 35/278 (12%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +I ++ +LS IF P +S N Y L +D ++G ++ E + P ASLTK+MT Sbjct: 4 IITSILLLSCIFFMPTISAESFNASAKYALAVDLDSGKILYEKDANRPAAIASLTKIMTV 63 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKGSTMTLDNALKLLIVK 114 Y+V+ + T + IS +YP SN +K T+ + ++ Sbjct: 64 YMVYKEIDNGNLKWNTKVNIS----DYPYQLTRESDASNVPLEK-RRYTVKQLVDAAMIS 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT------- 165 SAN A+A+AE + TE KFV M + G+ +H +NA G+ G++ Sbjct: 119 SANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQN 178 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +ARD+AI+++ + ++P + + + N+ + G G+ Sbjct: 179 DENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 239 KTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 275 >gi|295101851|emb|CBK99396.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii L2-6] Length = 429 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 18/258 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L + +TG I D ASLTK+MTA + K+ A +T P ++++ + + Sbjct: 46 LFNLDTGKPILRQNSDQQRYIASLTKMMTALLFLESGKDMNAEITIPTSLTQEFKDIQNA 105 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS 148 N + + G T+ + L L+V SAND A IA + + FV MN +K LG + Sbjct: 106 NGSTMNLRIGETVRRIDLLYGLLVASANDAASVIASDVSGGDLTAFVAQMNARAKELGCT 165 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-------HYFQIKGLEIKGKKYP 201 T F HG+ +G+ +TA D+A ++ + YM + L + Sbjct: 166 DTTFSCVHGLYDYGNVSTAEDLAKIAAACYAN-ETYMQAANTLTYTLPATNLHQNERTIK 224 Query: 202 NTNWAVGTFLG-----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 +TN + GMKTGFT +G V A Q + V+LG+ D N + Sbjct: 225 STNLMLDPEYAYHRDYVRGMKTGFTTLAGRCFVTFAQQDGHTYGLVVLGS-DMNNIYREC 283 Query: 257 ASLLSMGFYNKTDRKKIN 274 A +L F + +DR+ ++ Sbjct: 284 AEILDWAFSSFSDRQLVD 301 >gi|257898083|ref|ZP_05677736.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15] gi|257835995|gb|EEV61069.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15] Length = 435 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYP 90 +D +G ++ + + AS+TK++ Y+V +KE K ++IS +N S P Sbjct: 44 VDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTP 103 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K +T T+ I++SAN VA+AE + +E KF + M K+ + Sbjct: 104 DLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWDIKD 163 Query: 150 THFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIK 191 +NA G+ + +A+D+AI++ + DFP+ + Q+ Sbjct: 164 ATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAIVARHLILDFPEILDVSSTTTQMF 223 Query: 192 GLEIKGK-KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G + + N NW + F+ G DG+KTG T +G V + + DQ +I V+L A Sbjct: 224 GENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVLNA 283 >gi|42784193|ref|NP_981440.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|42740124|gb|AAS44048.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] Length = 279 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 178 IAIIT-KEALKYPVVLEYM 195 >gi|210614210|ref|ZP_03290105.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787] gi|210150787|gb|EEA81795.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787] Length = 469 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 27/230 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D ++G ++ D PAS+TK++TA V + + LT + ++N EY Sbjct: 75 VMDMDSGAILYAKKIDDQHYPASITKILTAVVAL-----ENSQLTDRVKFTQNCIDFLEY 129 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ K G +++++AL +++ SAN+++ AIA S+ F+ MN LG + Sbjct: 130 GDAHIGMKVGEEISMEDALYGMLLASANEVSYAIANSVNGGYDNFINMMNEKVAELGGTN 189 Query: 150 THFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +HF+NA+G+ HYT+A DMA++ +R T QY L + + + Sbjct: 190 SHFVNANGLHNDEHYTSAHDMALIGAAAFKYEEFRKITGTRQYT--IGPTALTSESRTFQ 247 Query: 202 NTNWAVGTFLG-------ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + F G G KTG+T + +V A + D++L+AV L Sbjct: 248 QNHKML--FQGNRNYYEYCVGGKTGYTDQALTTLVTFATKDDKNLVAVTL 295 >gi|254469200|ref|ZP_05082605.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp. JE062] gi|211961035|gb|EEA96230.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp. JE062] Length = 372 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 20/210 (9%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTF--KKGSTMTLDNA 107 PA+LTKLMTA V + T +S++A P +T + S++++++ Sbjct: 44 PANLTKLMTAVTVQQAIHAGDITPQTMFKVSEHAWRTGGAPARVTTMFARLNSSVSVNDL 103 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LIV SAND A+ +AE L +E+ F Q MN +K++G+ ++F N G H TT Sbjct: 104 MYGLIVHSANDAAIILAEGLAGSEENFAQEMNKLAKSIGMENSNFTNPTGFPDENHKTTL 163 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 D+ +L+ + P+ + + N N + G DG GF+ GF Sbjct: 164 EDLTVLAAYVLEHEPELHSVYAMDRFTWNKITQRNKNPLIRDIQGLDGFGAGFSEREGF- 222 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSA 257 LG LD N V+A Sbjct: 223 --------------AALGTLDSNGHRYVAA 238 >gi|222098460|ref|YP_002532518.1| serine-type d-ala-d-ala carboxypeptidase (d-alanyl-d-alanine carboxypeptidase) [Bacillus cereus Q1] gi|221242519|gb|ACM15229.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus Q1] Length = 279 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 178 IAIIT-KEALKYPVVLEYM 195 >gi|164686861|ref|ZP_02210889.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM 16795] gi|164604251|gb|EDQ97716.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM 16795] Length = 520 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 24/239 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NAS 87 YT++D N+G +I + PAS KL+TA V + L IT+ K N Sbjct: 41 YTVMDANSGEIIISEQENKRIYPASTIKLLTAIVAI-----ENCSLYKRITVKKSTLNKV 95 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + + K G TL+ L +L+V SA D A IAES+ T + FV+ MN +K LG+ Sbjct: 96 DVETTTAGLKPGYAYTLEELLNMLLVYSAGDAAEIIAESVGGTRENFVEMMNIRAKELGM 155 Query: 148 SATHFMNAHGVVQHGH---YTTARDMAILSW--------RIKTDFPQYM--HYFQIKGLE 194 + ++F N G+ H + Y+T+ D+A L+ R PQY+ +Y++ K Sbjct: 156 NDSYFDNPVGMDWHKNANIYSTSSDIAKLTRYAMTNDTIRAIVKKPQYVIKNYYKGKSKT 215 Query: 195 IKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N++ G KTG + +G+ + A+A D S VI ++TR Sbjct: 216 LYASNNFLRNYSYSKNLFTIIGSKTGTSDKAGYALSATA--RDSSGREVICAFFGKSTR 272 >gi|94989757|ref|YP_597857.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] gi|94543265|gb|ABF33313.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] Length = 410 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAERIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|325840226|ref|ZP_08166993.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] gi|325490374|gb|EGC92699.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] Length = 324 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L+D +I E PD PASLTK+MT V + M TP+ + + + E Sbjct: 82 LVDLTANEIIYERNPDVITYPASLTKMMTVLVAI------ENMPNTPMVVDVDFNKLYEE 135 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + F G ++ D+ L ++ S D A +A + +E+ FV+ MN ++ LG+++ Sbjct: 136 GAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKARELGMTS 195 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 THF N G+ HY+T RDMA+L Sbjct: 196 THFTNVTGLHDDNHYSTVRDMAVL 219 >gi|71910062|ref|YP_281612.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] gi|71852844|gb|AAZ50867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] Length = 410 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|293375518|ref|ZP_06621795.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis PC909] gi|292645858|gb|EFF63891.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis PC909] Length = 324 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 L+D +I E PD PASLTK+MT V + M TP+ + + + E Sbjct: 82 LVDLTANEIIYERNPDVITYPASLTKMMTVLVAI------ENMPNTPMVVDVDFNKLYEE 135 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + F G ++ D+ L ++ S D A +A + +E+ FV+ MN ++ LG+++ Sbjct: 136 GAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKARELGMTS 195 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 THF N G+ HY+T RDMA+L Sbjct: 196 THFTNVTGLHDDNHYSTVRDMAVL 219 >gi|50913625|ref|YP_059597.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] gi|50902699|gb|AAT86414.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] Length = 410 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYMVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 DGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|15605280|ref|NP_220066.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D/UW-3/CX] gi|3328991|gb|AAC68153.1| D-Ala-D-Ala Carboxypeptidase [Chlamydia trachomatis D/UW-3/CX] Length = 343 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 31/274 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + +F + +A LS FP + T K ++ ++G ++ E DH PAS+TK Sbjct: 7 LYRFFICLAPFFLS--FPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPASMTK 64 Query: 59 LMTAYVVFS--------FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLD---- 105 + TA ++ F+ ++ LT+ +K S Y P + G T+ L Sbjct: 65 IATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEE 124 Query: 106 ----NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 + L++ SAND A +A++ C++ F++ +N + LG THF + HG+ Sbjct: 125 VSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHP 184 Query: 162 GHYTTARDMA-ILSWRIKTD-FPQYMH--YFQIKGLEIKGKK-YPNTNWAVGT-----FL 211 HYTTARD++ I+ +K F Q +H + ++ + ++ +TN + + + Sbjct: 185 DHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSSTYFYP 244 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G KTG T ++G NI+ +A + ++S+I V G Sbjct: 245 PCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAG 278 >gi|15674465|ref|NP_268639.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M1 GAS] gi|13621563|gb|AAK33360.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Streptococcus pyogenes M1 GAS] Length = 410 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|21909750|ref|NP_664018.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS315] gi|28895132|ref|NP_801482.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Streptococcus pyogenes SSI-1] gi|94987881|ref|YP_595982.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|21903934|gb|AAM78821.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS315] gi|28810377|dbj|BAC63315.1| putative penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Streptococcus pyogenes SSI-1] gi|94541389|gb|ABF31438.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] Length = 410 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|323486924|ref|ZP_08092240.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum WAL-14163] gi|323691972|ref|ZP_08106221.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum WAL-14673] gi|323399787|gb|EGA92169.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum WAL-14163] gi|323503981|gb|EGB19794.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum WAL-14673] Length = 321 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 28/217 (12%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS TK+MTA + ++ L+ +T++++A +E S K G +T+ + L Sbjct: 97 PASTTKVMTAIIAL-----EEGNLSDQVTVTEDAVITEAGASLCGIKPGDVITMQDLLYG 151 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND A AIA + + F MN ++ LG + THFMN G+ HYTTA D+ Sbjct: 152 LMMPSGNDAANAIAVHMYGSIDAFADRMNVRARELGATGTHFMNPSGLTDENHYTTAYDL 211 Query: 171 AIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW---------AVGTFLGA 213 ++ +R Y +Q E K + NW A + LG Sbjct: 212 YLMFNEAMKLPLFREIIAEDSYTANYQNGAGEAVSKTWTVGNWYQKGERETPAGVSVLGG 271 Query: 214 DGMKTGFTCASGFN-IVASAIQGDQSLIAVILGALDR 249 KTG T A+G+ I+AS D+ I+V+L + R Sbjct: 272 ---KTGTTQAAGYCLIMASNDSQDKEYISVVLKSDSR 305 >gi|16801957|ref|NP_472225.1| hypothetical protein lin2897 [Listeria innocua Clip11262] gi|16415432|emb|CAC98123.1| lin2897 [Listeria innocua Clip11262] Length = 445 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS K + + Sbjct: 45 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDT 104 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G ++ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 105 SLSNVPLRLGEEYSVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGD 164 Query: 150 THFMNAHGV--------VQHGHYT-----TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ Q G T TAR MA L+ + D+P + E + Sbjct: 165 HQFVNSTGLNNEDLKGGQQVGGPTDENKMTARGMAKLAKHLIDDYPDVLKTASTTKKEFR 224 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q ++ V+L A Sbjct: 225 KGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVVTVVLHA 283 >gi|310828855|ref|YP_003961212.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612] gi|308740589|gb|ADO38249.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612] Length = 543 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 109/253 (43%), Gaps = 48/253 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYP 90 + + N+G V+ E D + PAS TKLMTA ++ + L +T+ Y Sbjct: 38 VFEVNSGDVLVEQNADERYYPASTTKLMTALTALDYVG---SSLNDKVTVGDEVKLIGYE 94 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSAND----IAVAIAESLCKTEKK--------FVQHM 138 S + + G T + L L++ S ND IA I + EK FV M Sbjct: 95 SSVAHLEVGEIYTWEQLLYALLLPSGNDAANVIAANIGRKISGNEKMDYNQAMSVFVDQM 154 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195 N ++ +GL THF NAHG+ HYTT DMA++ KT F +++G ++ Sbjct: 155 NAKAQQMGLKNTHFKNAHGLHDPDHYTTPADMAVIG---KTAFTNET-ISKVEGTKVYEM 210 Query: 196 -----KGKKYPNTNWAV--------GTF-----------LGADGMKTGFTCASGFNIVAS 231 + +K+ NT+ + GT A G KTG T +G V + Sbjct: 211 TTNRGEPQKWKNTDMLLYKDAADYGGTIEEGRTDNPYYNAKAKGGKTGNTDEAGRCFVYN 270 Query: 232 AIQGDQSLIAVIL 244 A GD ++ VI+ Sbjct: 271 AEDGDAKIVGVIM 283 >gi|71902909|ref|YP_279712.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] gi|71802004|gb|AAX71357.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] Length = 410 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDTKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+AI++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 DGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|330684640|gb|EGG96344.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus epidermidis VCU121] Length = 412 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 35/277 (12%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P ++ T G ++ + + + +PAS TKLMT +V+ +K K + + I+ + Sbjct: 45 PKGMIVTTKDGQILYDYHGNTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEK 104 Query: 89 YP--PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P+ +TF K+G+T+T++ LK ++S+N + +AE + + KF MN +K+ Sbjct: 105 MSELPNLTTFPLKEGTTVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKD 164 Query: 145 LGLSATHFMNAHGV-----------------VQHGHYTTARDMAILSWRIKTDFPQYMHY 187 LG+ T F N G + H TTARDM++LS I P + Sbjct: 165 LGMKDTKFTNPSGANNKILKPYEPKSYKDDTISH---TTARDMSLLSNHILNAHPDVLKI 221 Query: 188 FQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ + ++ NTN ++ DG+KTG T +G+N+ +A + ++ I Sbjct: 222 TKLSKDKQSNQELHNTNTSLPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGI 280 Query: 244 LGALD------RNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ R K++ +L F RK I+ Sbjct: 281 FNVKPYPDEQAKHARQKLANALTEHAFKQYDYRKVIS 317 >gi|317056264|ref|YP_004104731.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] gi|315448533|gb|ADU22097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] Length = 407 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 12/148 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT------TPITISKNA 86 LLD ++ ++A D PASLTKLMT V + + +A P+T +NA Sbjct: 99 LLDCDSNEILAGLKYDQRIYPASLTKLMTLLVAVENIDDMQAKYKFTKKDLAPLT-KENA 157 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S + F G +T+++ L I+ S D + +A ++ EK FV+ MN+ +LG Sbjct: 158 S-----CAGFVAGDEVTMEDLLYAAILPSGADGTLGLANAIAGNEKNFVKLMNDKVADLG 212 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILS 174 L+ T+F NA G+ HYTTA+DMA+++ Sbjct: 213 LANTNFANASGLHHKQHYTTAQDMAVIT 240 >gi|256843728|ref|ZP_05549216.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus 125-2-CHN] gi|256615148|gb|EEU20349.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus 125-2-CHN] Length = 433 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNATQTLPIASMTKLVTVYLALQAIKNNKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 115 EY--SNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKWGI 172 Query: 148 SATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ + +A+DMAI+ + DFP+ + ++ L Sbjct: 173 EDAKIYTACGLPNGNLGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLAHL 232 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 233 DFKDAGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|166154766|ref|YP_001654884.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu] gi|166155641|ref|YP_001653896.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336040|ref|ZP_07224284.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2tet1] gi|165930754|emb|CAP04251.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu] gi|165931629|emb|CAP07205.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 437 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 31/272 (11%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +F + +A LS FP + T K ++ ++G ++ E DH PAS+TK+ Sbjct: 9 RFFICLAPFFLS--FPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPASMTKIA 66 Query: 61 TAYVVFS--------FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLD------ 105 TA ++ F+ ++ LT+ +K S Y P + G T+ L Sbjct: 67 TALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEEVS 126 Query: 106 --NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L++ SAND A +A++ C++ F++ +N + LG THF + HG+ H Sbjct: 127 GWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHPDH 186 Query: 164 YTTARDMA-ILSWRIKTD-FPQYMH--YFQIKGLEIKGKK-YPNTNWAVGT-----FLGA 213 YTTARD++ I+ +K F Q +H + ++ + ++ +TN + + + Sbjct: 187 YTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSSTYFYPPC 246 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G KTG T ++G NI+ +A + ++S+I V G Sbjct: 247 LGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAG 278 >gi|229094119|ref|ZP_04225203.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|228689331|gb|EEL43150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 301 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKENE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 200 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 258 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 259 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 295 >gi|269928430|ref|YP_003320751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter thermophilus DSM 20745] gi|269787787|gb|ACZ39929.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 16/242 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + ++D +G V+ P ASLTK++TA V ++A L +T+ ++ Sbjct: 36 WIVMDGASGDVLDAQEPHQRTAIASLTKMLTALVAV-----ERADLEQVVTVMRS-DLIR 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--------EKKFVQHMNNTS 142 S++ ++G ++L L L++ S ND A+AIA ++ + +F+ MN + Sbjct: 90 GSSARLREGERLSLRTLLYGLLLPSGNDAALAIARAVGGSPHADDQAARGRFIDWMNERA 149 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 +LGL+ T +N HG+ H+ +A D+A+++ R + P F +G +Y + Sbjct: 150 VSLGLTDTRVVNPHGLDARDHFGSAHDLALVT-RAVLESPVLAPIFGAHDYSGEGHRYES 208 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + G G KTG+T A+G +V A + + +I V+LG+ + + LL Sbjct: 209 TNKLWERYPGIIGGKTGWTRAAGHCLVEVAERDGRRVIVVLLGSTSERWYDDATV-LLDH 267 Query: 263 GF 264 GF Sbjct: 268 GF 269 >gi|297155472|gb|ADI05184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis BCW-1] Length = 302 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 37/279 (13%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWN 52 MR++ VI + A +S + P +S A+ P LLD + + D Sbjct: 1 MRRWGAAVIASTAAVSVVLP-VSTAQAAGGPSGISAKGAYLLDNSANKQLWAKAADTKRP 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS TKLMTA VV L + L+ +T+ ++ +Y S + KKG +T+ L Sbjct: 60 MASTTKLMTAVVV---LDSRGLNLSKKVTVKQSYIDYVARVGGSKADLKKGDKLTVKQLL 116 Query: 109 KLLIVKSANDIAVAIAESL------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 L++ S D A+A+A++ K K F+ MN + LG++ TH+ G+ G Sbjct: 117 YGLMLPSGCDAAMALADTFGTGDTTAKRTKSFISQMNKKASALGMTKTHYDTFDGISYGG 176 Query: 163 H-YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----------KYPNTNWAVGTF 210 YTT RDMA L+ + +K ++ K + NTN +G++ Sbjct: 177 QNYTTPRDMAKLA---RHALGNSTLSTVVKSVDTVQKAPAANGRTRTYSWNNTNRLLGSY 233 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 GA G+KTG A G +V +A + ++++ VIL A R Sbjct: 234 SGAIGIKTGTGTAPGRCLVFAAKRNGRTVVGVILNAPKR 272 >gi|283769437|ref|ZP_06342335.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219] gi|283103962|gb|EFC05347.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219] Length = 315 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 7/208 (3%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + K +Y LLD G V+ E PASLTK+M YV + +++K+ + Sbjct: 26 QNTKSSHYLLLDLEQGEVLEEKGKSEKIYPASLTKMMVVYVALNHIEDKQKTAIISPNLL 85 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 K + + S + + ++ ++ L + + S D ++ +A++L T FVQ MN +K Sbjct: 86 KELRQQGAAISNYPSQTPISYEDLLYGIALPSGADCSITLAKALFPTTDAFVQAMNQEAK 145 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-IK-----GLEIKG 197 LG+ +HF N G+ HYTT D++ ++ + +YF IK G+ + Sbjct: 146 QLGMLHSHFDNVTGLHSPNHYTTLEDLSRF-LKVALKNQHFRNYFSAIKYTSKTGITLSH 204 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASG 225 Y + G G KTG+T +G Sbjct: 205 TLYRDIQKTGLKIPGYQGSKTGYTAQAG 232 >gi|228936311|ref|ZP_04099110.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823427|gb|EEM69260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 273 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+A+++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVGEKDGKRVINVVLSS----TRKQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|209558811|ref|YP_002285283.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) [Streptococcus pyogenes NZ131] gi|209540012|gb|ACI60588.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) [Streptococcus pyogenes NZ131] Length = 395 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+A+++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|260584324|ref|ZP_05852071.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] gi|260157842|gb|EEW92911.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans ATCC 700633] Length = 442 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 27/266 (10%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 IA + Y ++ +G ++ E D AS++K+++ Y++ +K + T I Sbjct: 19 IAALEDVASYIAIEQTSGKILMEKNQDDVRGIASMSKMVSQYLILEAIKNSEITWETKIP 78 Query: 82 ISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 IS+ AS+ Y SN ++ + + SAN +A+AE L +E K+V+ Sbjct: 79 ISERASKLSANYSLSNVPLWPNEKYSIQELFEASSIYSANAATIAMAEYLAGSEAKWVER 138 Query: 138 MNNTSKNLGLSATHFMNAHGVV-QHG-------------HYTTARDMAILSWRIKTDFPQ 183 M ++ G+ +NA G+ ++G + +AR +AI++ R+ DFP+ Sbjct: 139 MKEKVESWGIHDATIVNATGLPNKYGTTEKNPDFGDEAENSMSARSVAIVARRLVLDFPE 198 Query: 184 YMHYFQIKGLEIKGK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ 234 + + E + K N N+ + L G +G+KTG + SG +I +A + Sbjct: 199 ILKISSVATKEFRPGTAGVTKMDNFNYLIPGLLFGYDGVNGLKTGTSEISGASITTTATR 258 Query: 235 GDQSLIAVILGALDRNTRNKVSASLL 260 + S+I V +G+ R KV+ +L Sbjct: 259 NNFSVIVVTMGSKQPLNRFKVTTKML 284 >gi|153814792|ref|ZP_01967460.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756] gi|145847823|gb|EDK24741.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756] Length = 426 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 22/229 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ D AS TK+MT + + L+ +S AS P Sbjct: 67 LMDAETGRILFGKNKDEQMPMASTTKIMTCILAL-----ENGNLSDKAEVSSVASAQPKV 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T L + L L+++S ND AVAIAE + KF MN + LG ++T+F Sbjct: 122 KLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMNKKASQLGCNSTYF 181 Query: 153 MNAHGV---VQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKGKK-YP 201 + +G+ ++G H+TTA ++A + + PQ + +I + KG+K Y Sbjct: 182 ITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADAYTFTDCKGEKSYS 241 Query: 202 NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N TFL GA KTGFT +G+ V + + ++LI +L Sbjct: 242 CVNH--NTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALLAC 288 >gi|299538369|ref|ZP_07051652.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis ZC1] gi|298725956|gb|EFI66548.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis ZC1] Length = 356 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F++I+ M ML P S+A Y +LD TG ++ + D ASLTK+ TA Sbjct: 10 FMIIVLMVML----PQTSLARGG--SGYAVLDGETGRILIGSNSDERLPIASLTKIWTAL 63 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V + + L + IS A+ S+ + G +T++ L L+++S ND A A+ Sbjct: 64 VAI-----ENSDLQEEVVISPKAAMAEGSSIYLQAGEKVTVETLLYGLMLRSGNDAATAL 118 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 AE + + + FV+ MN + GL+ T FMN G+ H ++ARD A Sbjct: 119 AEHVGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHDEHLSSARDTA 166 >gi|255348929|ref|ZP_05380936.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70] gi|255503469|ref|ZP_05381859.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70s] gi|255507147|ref|ZP_05382786.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D(s)2923] gi|289525596|emb|CBJ15074.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis Sweden2] gi|296435156|gb|ADH17334.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/150] gi|296438876|gb|ADH21029.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/11023] Length = 437 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 27/240 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISK 84 ++ ++G ++ E DH PAS+TK+ TA ++ F+ ++ LT+ +K Sbjct: 39 VVHADSGAILKEKNLDHKIFPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAK 98 Query: 85 NASEY-PPSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S Y P + G T+ L + L++ SAND A +A++ C++ F+ Sbjct: 99 QQSGYRSPPHWLETDGMTIQLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFM 158 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYMH--YFQIK 191 + +N + LG THF + HG+ HYTTARD++ I+ +K F Q +H + ++ Sbjct: 159 RQLNEFLRELGCQNTHFNSPHGLHHPDHYTTARDLSLIMKEALKEPLFRQVIHTASYTME 218 Query: 192 GLEIKGKK-YPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + ++ +TN + + + G KTG T ++G NI+ +A + ++S+I V G Sbjct: 219 ATNLSPERVLSSTNKLLSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAG 278 >gi|331084851|ref|ZP_08333939.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410945|gb|EGG90367.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 323 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAYV K L+ +T+S+ A + S ++ +T++ L Sbjct: 98 PASTTKVLTAYVAL-----KYGNLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLYG 152 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND A+AIAE + + + FV+ MN ++ LG + THF N HG+ + HYTTA D+ Sbjct: 153 LLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYDL 212 Query: 171 AIL 173 ++ Sbjct: 213 YLI 215 >gi|255311369|ref|ZP_05353939.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276] gi|255317670|ref|ZP_05358916.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276s] gi|296436084|gb|ADH18258.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9768] gi|296437012|gb|ADH19182.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11222] gi|296437945|gb|ADH20106.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11074] gi|297140445|gb|ADH97203.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9301] gi|297748681|gb|ADI51227.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-EC] gi|297749561|gb|ADI52239.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-LC] Length = 437 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 31/274 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + +F + +A LS FP + T K ++ ++G ++ E DH PAS+TK Sbjct: 7 LYRFFICLAPFFLS--FPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPASMTK 64 Query: 59 LMTAYVVFS--------FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLD---- 105 + TA ++ F+ ++ LT+ +K S Y P + G T+ L Sbjct: 65 IATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEE 124 Query: 106 ----NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 + L++ SAND A +A++ C++ F++ +N + LG THF + HG+ Sbjct: 125 VSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHP 184 Query: 162 GHYTTARDMA-ILSWRIKTD-FPQYMH--YFQIKGLEIKGKK-YPNTNWAVGT-----FL 211 HYTTARD++ I+ +K F Q +H + ++ + ++ +TN + + + Sbjct: 185 DHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSSTYFYP 244 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G KTG T ++G NI+ +A + ++S+I V G Sbjct: 245 PCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAG 278 >gi|153855278|ref|ZP_01996444.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814] gi|149752277|gb|EDM62208.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814] Length = 452 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 28/275 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ D AS TK+MT + L+E I +S A+ P Sbjct: 90 LMDADSGRVLFGKDTDVVRPMASTTKIMTCILALESLREHP---DQTIEVSDQAASQPKV 146 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + +KG + + L L+++S ND AVA+AE + + ++F + MN + +G THF Sbjct: 147 HLGMQKGEVFYIKDLLYSLMLESHNDSAVAVAEGIAGSVEEFAKEMNAKAAEIGCKNTHF 206 Query: 153 MNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQ--YMHYFQIKGLEIKGKKYPNT-- 203 + +G+ H TTA D+A I+ + I T + ++ + K + + T Sbjct: 207 ITPNGLDAEDEGGVHSTTAEDLAKIMRYCIMTSGEKETFLEVTRTKEYQFQDADRKRTFS 266 Query: 204 ----NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N + GA KTGFT +G+ V S D++ I +L N + Sbjct: 267 CHNHNAFLDMMDGALSGKTGFTADAGYCYVGSLRWDDRTFIVALLACGWPNNK------- 319 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSN--EVPNI 292 G+ K RK + Y ++ + +++ ++P I Sbjct: 320 ---GYKWKDTRKLMEYGLEHYQYRDIDKKMQIPEI 351 >gi|325661590|ref|ZP_08150214.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472117|gb|EGC75331.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium 4_1_37FAA] Length = 323 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAYV K L+ +T+S+ A + S ++ +T++ L Sbjct: 98 PASTTKVLTAYVAL-----KYGNLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLYG 152 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND A+AIAE + + + FV+ MN ++ LG + THF N HG+ + HYTTA D+ Sbjct: 153 LLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYDL 212 Query: 171 AIL 173 ++ Sbjct: 213 YLI 215 >gi|317500314|ref|ZP_07958539.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089679|ref|ZP_08338578.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898255|gb|EFV20301.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] gi|330405047|gb|EGG84585.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium 3_1_46FAA] Length = 426 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 22/229 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ D AS TK+MT + + L+ +S AS P Sbjct: 67 LMDAETGRILFGKNKDEQMPMASTTKIMTCILAL-----ENGNLSDKAEVSSVASAQPKV 121 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G T L + L L+++S ND AVAIAE + KF MN + LG ++T+F Sbjct: 122 KLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMNKKASQLGCNSTYF 181 Query: 153 MNAHGV---VQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKGKK-YP 201 + +G+ ++G H+TTA ++A + + PQ + +I + KG+K Y Sbjct: 182 ITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADAYTFTDCKGEKSYS 241 Query: 202 NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N TFL GA KTGFT +G+ V + + ++LI +L Sbjct: 242 CVNH--NTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALLAC 288 >gi|229829069|ref|ZP_04455138.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM 14600] gi|229792232|gb|EEP28346.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM 14600] Length = 334 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 9/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AMLTTPITISKNASEYPP 91 +++ +GHV+ + PAS+TK++T FL + L+ +T+S+NA Sbjct: 88 VINETSGHVLYSKQANRKAYPASMTKVLT------FLTAMRCGQLSDTLTVSENALRVME 141 Query: 92 SN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + + G ++L AL +I+ S ND A+ IAE L + + F + MN T+ ++G + Sbjct: 142 GSTMAGLRAGDQISLQEALYAMILPSGNDAAITIAEGLGGSTEHFAEEMNETAASIGATH 201 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 TH++ +G+ HYTTA DM ++ Sbjct: 202 THYVTVNGLHDDNHYTTANDMYLI 225 >gi|146319524|ref|YP_001199236.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33] gi|145690330|gb|ABP90836.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33] Length = 415 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ ++G ++ E + + AS++K ++ Y+V+ L + + L T + IS +YP S Sbjct: 38 VEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLNTMVDIS----DYPYSL 93 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ + S + LD + L ++ S+N +A+AE + +E FV M + G Sbjct: 94 TSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWG 153 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ T +N G+ + + +A D+AI++ R+ D+PQ + + Sbjct: 154 ITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNA 213 Query: 193 LEIKGKKYPNTNWAV--GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G Y +TN + GT G DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 214 YDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 273 >gi|1420858|emb|CAA61521.1| penicillin-binding protein [Streptococcus pyogenes] Length = 324 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+A+++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|313616580|gb|EFR89415.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria innocua FSL S4-378] Length = 433 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 26/239 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEY 89 ++ +TG ++ D AS+TK+M Y++ + + + +TIS+ A + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G ++ + + + SAN A+AI+E + +EK+FV MN ++ L L Sbjct: 93 SLSNVPLRLGEEYSVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGD 152 Query: 150 THFMNAHGV--------VQHGHYT-----TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 F+N+ G+ Q G T TAR MA L+ + D+P + E + Sbjct: 153 HQFVNSTGLNNEDLKGGQQVGGPTDENKMTARGMAKLAKHLIDDYPDVLKTASTTKKEFR 212 Query: 197 GK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N NW + + G DG+KTG T +G + A+A+Q ++ V+L A Sbjct: 213 KGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVVTVVLHA 271 >gi|325678286|ref|ZP_08157914.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] gi|324110049|gb|EGC04237.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] Length = 401 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 12/148 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNA 86 L+D ++ +IA D PASLTKLMT V + + A P+ I +NA Sbjct: 102 LMDADSNELIAGLKYDKKIYPASLTKLMTLLVAVENIDDMNAKYKFTDKDIDPL-IDENA 160 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S + + G T+++ L I+ S D + +A ++ +EK FV+ MN+ + LG Sbjct: 161 SR-----AGYVAGDEATMEDLLYAAILPSGADGTLGLANAIAGSEKDFVKLMNDKAAELG 215 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILS 174 L+ T+F+NA G+ HYTTA+DMA+++ Sbjct: 216 LTDTNFVNASGLHDKQHYTTAQDMAVIT 243 >gi|238925625|ref|YP_002939142.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] gi|238877301|gb|ACR77008.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] Length = 526 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 56/285 (19%) Query: 4 FLVIIAMAMLSNIF--PFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 L++ AM++ + P ++ A+ + P +++ NTG V+ E Sbjct: 59 ILIMAVFAMVTTLCARPLMAFADGDDTYWPEGPQINSPCAVVMEVNTGTVLYEKNSHEKH 118 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPPSNSTFKK--GSTMTLDNAL 108 PAS+TK++T Y+ K + +T SK A E +S+ K+ G MT++ L Sbjct: 119 YPASITKILTTYLTILNCK-----MDEKVTFSKEAVKESSDGSSSIKRDVGEEMTMEQTL 173 Query: 109 KLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 ++++SAN+ A A AE L F+ MN +K LG + THF NA+G+ H+ Sbjct: 174 YGVMLESANECAYAAAEHTGKKLGGDYSTFIDLMNKEAKELGCTDTHFNNANGLPDENHW 233 Query: 165 TTARDMAILSW-----------------------RIKTDFPQYMHYFQIKGLEIKGKKYP 201 T+A DM ++S + D P Y H+ + +P Sbjct: 234 TSAYDMGLISCAAYRNDEFRKITGTKTYIIPPTNKHTEDTPLYNHHAML---------HP 284 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +++ G KTG+T + +V A + +L VI+ A Sbjct: 285 FKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCVVIMNA 329 >gi|222152530|ref|YP_002561705.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] gi|222113341|emb|CAR40940.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] Length = 400 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--- 90 ++ TG ++ + + ASLTK++T Y+ +K K TP+ +S A E Sbjct: 38 VECETGKILYQKEANQKAPIASLTKILTVYLTLKEIKNGKISWDTPVKMSDYAKELANNP 97 Query: 91 -PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + K T T+ + +V S+N A+++AE++ +E +FV M + G+ Sbjct: 98 DVSNPSLYK-DTFTVKELIDSSMVVSSNSAAISLAETIAGSEPQFVDMMKKQLQTWGIQD 156 Query: 150 THFMNAHGV---VQHGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + +GH +A+++AI++ + ++FP+ + L Sbjct: 157 YQLVNASGLNNSMLNGHLYPKSKPNDENQLSAKNLAIVASHLISEFPEILAISSQSQLYW 216 Query: 196 KGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N+N + LG DG+KTG T +G + +A+Q + +I VIL A Sbjct: 217 GNDVLQNSNHLLPGLSMGRLGVDGLKTGTTGCAGQTYIGTAVQDNMRVIVVILHA 271 >gi|260588732|ref|ZP_05854645.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|331084099|ref|ZP_08333206.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540914|gb|EEX21483.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|330402461|gb|EGG82031.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium 6_1_63FAA] Length = 340 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 17/226 (7%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D V+A + PAS+TK++T + L + + + P+ E S + Sbjct: 90 DVQNNKVLASKNAEERIYPASMTKILTLLIAVEELSDLEEKVQIPVDEVLAEYERGASMA 149 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 F+ G +++ + L L++ S + A+A + +E+ F + MN +K LG+ +HF+N Sbjct: 150 GFQPGEKVSVKDLLYGLMLPSGAECCTALACRISGSEEAFAEKMNERAKELGMLNSHFVN 209 Query: 155 AHGVVQHGHYTTARD-MAILSWRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNW--- 205 A G+ + HYTT D M +L IK + F + E G + +T + Sbjct: 210 ASGLHEEEHYTTVTDIMILLEQAIKNETFYEVFTTRSYTTAPTAAEPNGITFESTMYDKK 269 Query: 206 -----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G LG KTGFT A+G + + A+ Q I V GA Sbjct: 270 STLEVTDGEILGG---KTGFTNAAGQCLASLAMVEGQEYILVTAGA 312 >gi|146321721|ref|YP_001201432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33] gi|145692527|gb|ABP93032.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33] gi|292559140|gb|ADE32141.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis GZ1] Length = 415 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ ++G ++ E + + AS++K ++ Y+V+ L + + L T + IS +YP S Sbjct: 38 VEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDIS----DYPYSL 93 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ + S + LD + L ++ S+N +A+AE + +E FV M + G Sbjct: 94 TSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWG 153 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ T +N G+ + + +A D+AI++ R+ D+PQ + + Sbjct: 154 ITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNA 213 Query: 193 LEIKGKKYPNTNWAV--GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G Y +TN + GT G DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 214 YDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 273 >gi|56807642|ref|ZP_00365536.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M49 591] Length = 410 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 +D +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y Sbjct: 35 VDLESGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ L L+V +AN A+A+AE + TE KFV M + G+S Sbjct: 95 TISNVPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ G+ H G T A D+A+++ + +FP+ + Sbjct: 154 AKVVNSTGLTNHFLGANTYPNTEPDDENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 214 AGQTIYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|253756292|ref|YP_003029432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis BM407] gi|251818756|emb|CAZ56593.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis BM407] Length = 413 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ ++G ++ E + + AS++K ++ Y+V+ L + + L T + IS +YP S Sbjct: 36 VEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDIS----DYPYSL 91 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ + S + LD + L ++ S+N +A+AE + +E FV M + G Sbjct: 92 TSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWG 151 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ T +N G+ + + +A D+AI++ R+ D+PQ + + Sbjct: 152 ITDTKIVNVSGLDNTDLGENIYPSSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNA 211 Query: 193 LEIKGKKYPNTNWAV--GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G Y +TN + GT G DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 212 YDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 271 >gi|160944238|ref|ZP_02091467.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii M21/2] gi|158444420|gb|EDP21424.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii M21/2] Length = 466 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 33/268 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT--------LLDTNTGHVIAENYPDHPWNPASL 56 LV+ +S + P ++ +P T L + +TG I D ASL Sbjct: 49 LVLTLAVAVSAVLPVFAV---YPMPVQTATETEAVYLFNADTGKTILNQNADQQKYVASL 105 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIV 113 TKLMTA ++ K+ +T P +++ + +N T + G T+ + L +++ Sbjct: 106 TKLMTALLLVESGKDLNGEVTVPTDLTQEFKDIQNANGTTIGLRIGETVRRIDLLNAMLI 165 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND A IA + + FVQ MN + LG + T+F AHG+ +G+ +TA+D+A Sbjct: 166 VSANDAASVIAWDVGGSVVGFVQQMNAKAAELGCTGTNFTCAHGLFDYGNVSTAQDLA-- 223 Query: 174 SWRIKTDFPQYMHYFQIKGL------EIKGKKYPNTNWAVGTFLGADG---------MKT 218 +I + + Q+ G +K +T + + + ++ +K Sbjct: 224 --KIAAACAENQTFAQVAGTASYVLPATNLRKAEHTISSSNSLMNSESSNYREYVKWVKG 281 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 GFT +G IVA A Q + VILG Sbjct: 282 GFTTLAGRCIVAFAQQDGHNYGLVILGC 309 >gi|229175705|ref|ZP_04303213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228607846|gb|EEK65160.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 301 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIGKMMTTLLLLENVKENE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 200 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 258 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 259 KYTVVTVDEKDGKRVINVVLSS----TRTQLYPDTKKMAHY 295 >gi|187779942|ref|ZP_02996415.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC 15579] gi|187773567|gb|EDU37369.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC 15579] Length = 424 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 28/260 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L+I + SN+F + ++N P +D TG +I D PAS TK Sbjct: 11 LLIFIFTLTSNVF---AAGDSNTEPPIIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK-----GSTMTLDNALKLLIV 113 +TA + L E K I + A PP + G T+ +N + L++ Sbjct: 68 YLTALL----LAENKGK-NDNIPYTATAKSQPPYSMNINLHPINIGETIKAENVMDGLLL 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND A I ++L K F MN + L L THF+ +G+ HYTTA D++I+ Sbjct: 123 FSGNDTAYMIGDALAGNSKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSII 182 Query: 174 SWRIKTDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGM---KTGFTCASGFN 227 S R P K I KG K N LG DG KTG+T A+G Sbjct: 183 S-RAALKNPWVYQSSNKKESSIVTSKGTKMTVEN--SNKLLGKDGCVAGKTGYTDAAGRC 239 Query: 228 IVASAIQGDQSLIAVILGAL 247 +V + D+ ++ V++G++ Sbjct: 240 LVTLFNRDDRKILGVVMGSV 259 >gi|282866806|ref|ZP_06275843.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] gi|282558352|gb|EFB63917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] Length = 320 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 26/236 (11%) Query: 33 LLDTNTGH----VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 LLD G + A D + AS TK+MTA VV + L IT+ + + Sbjct: 71 LLDARDGSQERPMWAGTKADESVSMASTTKIMTALVVL----QHPEWLDRQITVKQEYRD 126 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK------FVQHM 138 Y +N + G +T L +++ S D A+A+A+S + + F M Sbjct: 127 YVTANGASTADLQTGDKLTARQLLHAMLIPSGGDAAMALADSFGNGDTQEARIADFQDQM 186 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQY--MHYFQIKGLE 194 N ++ LGL+ THF + G+ + +TARD+A L R +K F + ++ + Sbjct: 187 NTHAQQLGLTGTHFDSFDGISHGDNRSTARDLAKLGQRAMLKPVFADIVKLEQYETEAPA 246 Query: 195 IKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+ + TN + T+ GA G+KTG +G+++V +A + +++L+ I+GA Sbjct: 247 ANGRTRYYTWNTTNDLLSTYDGALGVKTGSGSEAGYSLVFAAERDNRTLVGAIVGA 302 >gi|228988259|ref|ZP_04148355.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229187255|ref|ZP_04314400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228596265|gb|EEK53940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228771469|gb|EEM19939.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 273 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+A+++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|167760257|ref|ZP_02432384.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704] gi|167662140|gb|EDS06270.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704] Length = 475 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 34/235 (14%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-P 90 +++ TG ++ A+N H + PAS+TK++TA V + L P+T S ++ + Sbjct: 94 VMEVGTGAILYAKNIDSHQY-PASITKVLTALVAM-----ENGQLEDPVTFSHDSVAFLK 147 Query: 91 PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK----FVQHMNNTSKN 144 P +S+ K+G+ ++L+ AL ++ SAN+ A A+ ES+ F++ MN + Sbjct: 148 PGDSSVGLKEGNQISLEQALHATLLASANEAAYAVGESVGINAGHDYNWFMEQMNIRCRE 207 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---- 200 LG ++F N +G+ HYT ARDMA++ R P + Q I + Sbjct: 208 LGGENSNFANTNGLHDENHYTCARDMALIG-RELFKHPDFFRIVQTLNYAIPASETVEEH 266 Query: 201 -----------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N+N+ + A G KTGFT + ++ A G L+ V+L Sbjct: 267 IFQQKHKMLIPENSNY----YPYAIGGKTGFTSDALSTLITMADNGGMQLVCVVL 317 >gi|295103732|emb|CBL01276.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii SL3/3] Length = 430 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 37/298 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT--------LLDTNTGHVIAENYPDHPWNPASL 56 LV+ +S + P ++ +P T L + +TG I D ASL Sbjct: 13 LVLTLAVAVSAVLPVFAV---YPMPVQTATETEAVYLFNADTGKTILSQNADQQKYVASL 69 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIV 113 TKLMTA ++ K+ +T P +++ + +N T + G T+ + L +++ Sbjct: 70 TKLMTALLLVESGKDLNGEVTVPTDLTQEFKDIQNANGTTMGLRIGETVRRIDLLNAMLI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND A IA + + FVQ MN + LG + T+F AHG+ +G+ +TA+D+A Sbjct: 130 ISANDAASVIAWDVGGSVVGFVQQMNARAAELGCTGTNFTCAHGLFDYGNVSTAQDLA-- 187 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG-----------------M 216 +I + + Q+ G P TN + + + Sbjct: 188 --KIAAACAENQTFAQVAG--TASYVLPATNLRKAEYTISSSNSLMNSESANYREYVKWV 243 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 K GFT +G IVA A Q + VILG + L F + DR ++ Sbjct: 244 KGGFTTLAGRCIVAFAQQDGHNYGLVILGCDTPDHLFTACDDLFDWAFASFADRPLVD 301 >gi|238924099|ref|YP_002937615.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] gi|238875774|gb|ACR75481.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] Length = 301 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY++ K L +T+S +A+ S+S K+G +T+ + L Sbjct: 77 PASTTKILTAYIIL-----KNCDLNATVTVSHDAANPGHSSSVCGLKEGDVITVQDLLYG 131 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+++S ND A+A+AE + ++F + MN+T+K+ G + ++F+N G+ HYTT DM Sbjct: 132 LLLESGNDAAIALAEYCSGSAEEFAKLMNSTAKSFGATNSNFVNPSGLPDENHYTTIYDM 191 Query: 171 AIL 173 ++ Sbjct: 192 YLI 194 >gi|312868004|ref|ZP_07728208.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] gi|311096408|gb|EFQ54648.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis F0405] Length = 413 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 50/308 (16%) Query: 4 FLVIIAMAMLSNIFPF-LSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLM 60 FL + +L P+ + +A+ +LP + + + +TG ++ E + + L+ L+ Sbjct: 5 FLSFLTFILLLCSLPYQVVLADELELPAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLL 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE--YPPSNSTFK-KGSTMTLDNALKLLIVKSAN 117 T Y++F + EKK L PI +S+ A Y T + + T++ L L+V +++ Sbjct: 65 TTYLIFEAIHEKKLSLKDPIKLSEKALALNYIEGAGTLPMEANQYTVEQLLTALLVGNSS 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----------VQHGHYTT 166 A+A+AE + +EK FV+ M G+ + H +NA G+ + + + Sbjct: 125 TAALALAEKVGGSEKSFVEKMKQKLTEWGIQSPHLINATGLNTQTISGDPDGKEDENQLS 184 Query: 167 ARDMAILSWRIKTDFPQYMHY----------FQIKGLEIKGKKYPNTNWAVGTFLGADGM 216 A D+A+++ + DFP+ Y QI+ + + PN G DG+ Sbjct: 185 AYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRS------GVDGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRN--TRNKVSASLLSMGFYNKTDRKK 272 + + G AS Q +I V+LG A+D + R ++SL+ Sbjct: 239 RVSNSNKGGITFAASTTQNGIHMITVVLGVDAVDGDPYARFVATSSLM------------ 286 Query: 273 INYIIKDF 280 NY+++ F Sbjct: 287 -NYVVRTF 293 >gi|253752532|ref|YP_003025673.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis SC84] gi|253754358|ref|YP_003027499.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis P1/7] gi|251816821|emb|CAZ52465.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis SC84] gi|251820604|emb|CAR47361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis P1/7] gi|319758942|gb|ADV70884.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis JS14] Length = 413 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ ++G ++ E + + AS++K ++ Y+V+ L + + L T + IS +YP S Sbjct: 36 VEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDIS----DYPYSL 91 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ + S + LD + L ++ S+N +A+AE + +E FV M + G Sbjct: 92 TSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWG 151 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ T +N G+ + + +A D+AI++ R+ D+PQ + + Sbjct: 152 ITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNA 211 Query: 193 LEIKGKKYPNTNWAV--GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G Y +TN + GT G DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 212 YDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 271 >gi|58337864|ref|YP_194449.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus NCFM] gi|58255181|gb|AAV43418.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus NCFM] Length = 432 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 32/243 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNAS 87 +D+N+G ++ D AS+TKL+T Y+ + +K KK T I N + Sbjct: 54 IDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKVANNA 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++KKF+ M K G+ Sbjct: 114 EY--SNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKWGI 171 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + ++P+ + ++ L Sbjct: 172 EDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLAHL 231 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 232 DFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLITVV 291 Query: 244 LGA 246 +GA Sbjct: 292 MGA 294 >gi|227511987|ref|ZP_03942036.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri ATCC 11577] gi|227084795|gb|EEI20107.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri ATCC 11577] Length = 421 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92 +D +TG ++ E P AS++KLMT Y+V ++E K + IS ++ + Sbjct: 45 VDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLSWNDQVKISPAVAKLSTAS 104 Query: 93 ---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 N K G + + + +K ++ SAN A+A+ + + + F M T++ LG+ Sbjct: 105 GLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGLGIKD 164 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 F NA G+ + +A+D+A+L+ R++ FP + + Sbjct: 165 AKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITRQTQMNF 224 Query: 196 KGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G Y N A G + +G+KTG + +G SA + ++ V+LGA Sbjct: 225 SGNSYAGHNQLLDDRQIAKGAVV--NGLKTGTSDEAGACFAGSATYHGRRIVTVVLGA 280 >gi|296877427|ref|ZP_06901464.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 15912] gi|296431588|gb|EFH17398.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parasanguinis ATCC 15912] Length = 413 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 133/298 (44%), Gaps = 36/298 (12%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASL 56 M++F + + + +L ++ P A LP + + + +TG ++ E D L Sbjct: 1 MKKFFLSFLTFILLLCSLPPQRIFANEPDLPVQSAIAVEADTGKILYEKDSDKKREVGGL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113 + L+T Y++F + +KK L PI +S+ A ++ + + + + T+D L L+V Sbjct: 61 STLLTTYLIFEAIHDKKLSLKDPIKLSEEALALNDIKGAGTLPIEANQYTVDQLLIALLV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-----------VQHG 162 +++ A A+AE + +EK FV+ M G+ + H +NA G+ + Sbjct: 121 GNSSTAAFALAEKVGGSEKSFVEKMKQKLAEWGIQSPHLINATGLNTQTISGDPDGKEDE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHY----------FQIKGLEIKGKKYPNTNWAVGTFLG 212 + +A D+A+++ + DFP+ Y QI+ + + PN G Sbjct: 181 NQLSAYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRS------G 234 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYNKT 268 DG++ + G AS Q +I V+LG A+D + + A+ M + +T Sbjct: 235 VDGLRVSNSTKGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRT 292 >gi|254504922|ref|ZP_05117073.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222440993|gb|EEE47672.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 374 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 10/236 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T K P L + +G V+ D P+ P +L K+MTA VF L + + T+S+ Sbjct: 16 TTKAPKALLYEPASGTVLFAKDADVPFAPGALVKVMTAATVFKALSDGELTQDQLCTVSE 75 Query: 85 NASEYPPSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +A + + +G+TM ++++ LK L+V + ND A+ +AE L +E F Sbjct: 76 HA--WRTGGAPSGRGATMFAAIKSEISVEDLLKGLLVHNGNDSAIILAECLDGSETAFAD 133 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN + +G++ ++F N G + TT RD L + + + F I Sbjct: 134 RMNALAAEIGMANSNFGNPTGYEEAVSTTTVRDQVRLGEYLVEEHTERYSMFAIPEFTWN 193 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N N +G DG+ G G++ + S + + +IA + G N R Sbjct: 194 NIFQRNKNPLLGEIRNLDGLGGGAHSEDGYSGLGSIDRNGRRIIAAVAGLTSDNHR 249 >gi|227904514|ref|ZP_04022319.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC 4796] gi|227867723|gb|EEJ75144.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC 4796] Length = 432 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 32/243 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML------TTPITISKNAS 87 +D+N+G ++ D AS+TKL+T Y+ + +K KK T I N + Sbjct: 54 IDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKVANNA 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++KKF+ M K G+ Sbjct: 114 EY--SNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKWGI 171 Query: 148 SATHFMNAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGL 193 A G+ V Y +A+DMAI+ + ++P+ + ++ L Sbjct: 172 EDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLAHL 231 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 232 DFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLITVV 291 Query: 244 LGA 246 +GA Sbjct: 292 MGA 294 >gi|302024467|ref|ZP_07249678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05HAS68] Length = 402 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ ++G ++ E + + AS++K ++ Y+V+ L + + L T + IS +YP S Sbjct: 25 VEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDIS----DYPYSL 80 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ + S + LD + L ++ S+N +A+AE + +E FV M + G Sbjct: 81 TSNTELSNVNLDARSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWG 140 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ T +N G+ + + +A D+AI++ R+ D+PQ + + Sbjct: 141 ITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNA 200 Query: 193 LEIKGKKYPNTNWAV--GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G Y +TN + GT G DG+KTG + ++G + +A+ Q +I V+L A D Sbjct: 201 YDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNAND 260 >gi|319744055|gb|EFV96432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae ATCC 13813] Length = 411 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 35/278 (12%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +I ++ +LS IF P +S N + L +D ++G ++ E + P ASLTKLMT Sbjct: 4 IITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKLMTV 63 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKGSTMTLDNALKLLIVK 114 Y+V+ + T + IS +YP SN +K T+ + ++ Sbjct: 64 YMVYKEIDNGNLKWNTKVNIS----DYPYQLTRESDASNVPLEK-RRYTVKQLVDAAMIS 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT------- 165 SAN A+A+AE + TE KFV M + G+ +H +NA G+ G++ Sbjct: 119 SANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQN 178 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +ARD+AI+++ + ++P + + + N+ + G G+ Sbjct: 179 DENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 239 KTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 275 >gi|229199155|ref|ZP_04325838.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228584426|gb|EEK42561.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] Length = 273 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 F NA G G+ + D+AI++ + +P + Y Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPVVLEYM 189 >gi|291548476|emb|CBL21584.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 415 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 34/240 (14%) Query: 48 DHPWNPASLTKLMTAYVVF--SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 D +PA K+MT + S L ++ M T ++ + + S + G T++ Sbjct: 75 DTTLSPAGAVKIMTCLLALENSQLDDQVTMTETGVSGVTDGGAHISS----QLGEVFTME 130 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 L L++ SANDIA+ +AE + + FVQ MN+ +K LG + T F N G+ +T Sbjct: 131 QCLYALMLASANDIALQVAEQIGGSVDAFVQKMNDRAKELGCTNTVFTNPTGLPDDNQHT 190 Query: 166 TARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT--------------- 209 TA D+A I+ I+ D + I G P TN + GT Sbjct: 191 TAHDLALIMQAAIRND-----SFRTISG--ATSYTIPATNVSGGTRNLTSSFTMTDPASA 243 Query: 210 --FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGFYN 266 + G G + T ASG +V +A + +LIAV++ GA + + SLL GF N Sbjct: 244 SYYEGCIGGRESTTTASGSVLVTAAQRNGTTLIAVVMNGATGQTATEAI--SLLDYGFSN 301 >gi|150015409|ref|YP_001307663.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149901874|gb|ABR32707.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 411 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 18/246 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG V+ + PAS TK+MTA + +K L +T+ ++ ++ + Sbjct: 39 LIDASTGQVLYGKNEEKVLEPASTTKVMTAIITL-----EKCKLDDEVTVQEDFTKIDGT 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG +T+ + L L+++S ND A A+A+ + + + F + MN +K LG T+F Sbjct: 94 AVGLLKGDVVTVRDLLLGLLLESGNDCANALADHISGSTEAFSKLMNEKAKELGALHTNF 153 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------NTNW 205 N G+ H TTA D+A+ R + Y+ I K P N N+ Sbjct: 154 KNPSGLPDPEHTTTAHDLALF-LREAINNKDYVQLSTTPNYTITLKNNPSKTIVLNNKNY 212 Query: 206 AVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + + A K G+T S VA+A + L+A L ALD++ ++L Sbjct: 213 MINKNSRYYYPFALCGKNGYTTKSNHTYVAAAEKNGHVLVASFLNALDKDQNFHDMQAVL 272 Query: 261 SMGFYN 266 + GF N Sbjct: 273 NYGFDN 278 >gi|291524841|emb|CBK90428.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629] Length = 301 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY++ K L +T+S +A+ S+S K+G +T+ + L Sbjct: 77 PASTTKILTAYIIL-----KNCDLNATVTVSHDAANPGHSSSVCGLKEGDVITVQDLLYG 131 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+++S ND A+A+AE + ++F + MN+T+K+ G + ++F+N G+ HYTT DM Sbjct: 132 LLLESGNDAAIALAEYCSGSVEEFAKLMNSTAKSFGATNSNFVNPSGLPDENHYTTIYDM 191 Query: 171 AIL 173 ++ Sbjct: 192 YLI 194 >gi|239637166|ref|ZP_04678158.1| penicillin binding protein 4 [Staphylococcus warneri L37603] gi|239597298|gb|EEQ79803.1| penicillin binding protein 4 [Staphylococcus warneri L37603] Length = 412 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 35/277 (12%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P ++ T G ++ + + +PAS TKLMT +V+ +K K + + I+ + Sbjct: 45 PKGMIVTTKDGQILYDYHGSTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEK 104 Query: 89 YP--PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P+ +TF K+G+T+T++ LK ++S+N + +AE + + KF MN +K+ Sbjct: 105 MSELPNLTTFPLKEGTTVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKD 164 Query: 145 LGLSATHFMNAHGV-----------------VQHGHYTTARDMAILSWRIKTDFPQYMHY 187 LG+ T F N G + H TTARDM++LS I P + Sbjct: 165 LGMKDTTFTNPSGANNKILKPYEPKSYKDDTISH---TTARDMSLLSNHILNAHPDVLKI 221 Query: 188 FQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ + ++ NTN ++ DG+KTG T +G+N+ +A + ++ I Sbjct: 222 TKLSKDKQSNQELHNTNTSLPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGI 280 Query: 244 LGALD------RNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ R K++ +L F RK I+ Sbjct: 281 FNVKPYPDEQAKHARQKLANALTEHAFKQYDYRKVIS 317 >gi|302672276|ref|YP_003832236.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio proteoclasticus B316] gi|302396749|gb|ADL35654.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio proteoclasticus B316] Length = 488 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 23/227 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG ++ PAS TK+MT L + A L+ IT S A P Sbjct: 80 VMDASTGTILYAKNIHEELYPASTTKIMTC-----LLAVENASLSDKITFSNEAVFSVPR 134 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + G ++TL+ AL ++V SAN++A A+AE + + FV MN + LG + Sbjct: 135 DGSSIGMDVGESITLEQALFGIMVGSANEVANAVAEHVSGSIDAFVNLMNQRASELGCTN 194 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI--------KTDFPQYMHYFQIKGLEIKGKKYP 201 THF N +G+ HYT+A D+A+++ + P+Y H+ + Y Sbjct: 195 THFNNTNGLQDDDHYTSAYDLALIARAFFNNELLCKVGNTPRY-HFTETS--TQPDDFYL 251 Query: 202 NTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + T F G G KTG+T + +V A + LI VIL Sbjct: 252 NNKHKLITGEVKFDGIIGGKTGYTDQARETLVTCAERDGVKLICVIL 298 >gi|302386416|ref|YP_003822238.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302197044|gb|ADL04615.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 322 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 41/250 (16%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK MTA + K LT +T++ +A +E S K G +T++ L Sbjct: 98 PASITKTMTALIAL-----KYGNLTDEVTVTGDAVITEAGASLCGIKPGDKLTMEQLLYG 152 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AIA + +F Q MN + +G + THF+N HG+ HYTTA D+ Sbjct: 153 LMLPSGNDAGAAIATHIAGGIDQFSQMMNEEAGKIGATGTHFLNPHGLNDENHYTTAYDL 212 Query: 171 AIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 ++ +R +Y +Q + TNW + G M G T Sbjct: 213 YLIFNEALKYPEFRKIIATTEYTTTYQDGAGSPVNATWKGTNWYM---TGERQMPEGLT- 268 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 +LG + K + S L MG + + R+ + ++K Sbjct: 269 --------------------VLGG--KTGTTKAAGSCLIMGSSDSSQREYVTVVLKAPNH 306 Query: 283 QNLSNEVPNI 292 L + + NI Sbjct: 307 AGLYDNMTNI 316 >gi|110598043|ref|ZP_01386322.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans DSM 13031] gi|110340302|gb|EAT58796.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans DSM 13031] Length = 486 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 25/243 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D + V+ D P +PASLTK++T + K L + I++ ++ Sbjct: 91 YIVKDLCSSRVVMAKDIDRPVSPASLTKILTCIMAIESGK-----LDQDVVITRESTNVE 145 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS + F+ G + L + +K +V S+ND A AIA L + FV MN+ ++ +G+ + Sbjct: 146 PSKAGFRVGERIRLLDLVKAAMVNSSNDAAFAIAIHLSGSVDAFVASMNSRARAIGMRNS 205 Query: 151 HFMNAHGV---VQHGHYTTARDMAIL---SWR-------IKTDFPQYMHYFQIKGLEIKG 197 F N G + G+ +TA D+ L S R + D ++ K +K Sbjct: 206 RFTNPAGFDKGIYAGNTSTAGDLLCLTEYSVRNPVFNAVARLDRAVFVEQSTRKVYSLK- 264 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N +G + A G+KTG+T +G ++ AI+ ++ ++ V+L + R R V+A Sbjct: 265 ----THNKLLGRYPYAVGIKTGYTGRAGRCLIGRAIKDNRDILLVMLNS--RTDRWNVAA 318 Query: 258 SLL 260 + Sbjct: 319 EMF 321 >gi|312199939|ref|YP_004020000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp. EuI1c] gi|311231275|gb|ADP84130.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp. EuI1c] Length = 437 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 28/272 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG ++A D PAS K++TA VV L + +T+ ++A Sbjct: 81 WLVADADTGQILAAKGADTRDLPASTMKILTALVVLPGLAPDRR-----VTVGRDAVTVD 135 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G + + + +++ S ND VA+ +++ + V MN + +LG + T Sbjct: 136 GTKVGLVPGQSYLVRDLATAMLIASGNDATVALVDAVGGRDA-VVARMNALAASLGATDT 194 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK----------GLEIKGKKY 200 H ++ G+ G ++ RD+AIL R P Y I EI+ Sbjct: 195 HAVDPTGLDAPGQLSSVRDLAILG-RAAIAQPVISRYLTIPRAVLPTPNGGSFEIQ---- 249 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV--SAS 258 N N +G + G G+K G+T A+ V +A +G ++L+ +L R N + + Sbjct: 250 -NHNLLLGRYPGTLGVKNGYTVAADATYVGAARRGGRTLVVALL----RAAPNYAADARA 304 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 LL GF N + + + +EVP Sbjct: 305 LLDWGFANDGVAAPVGMLPAPPPAPTVGDEVP 336 >gi|302874417|ref|YP_003843050.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] gi|307690977|ref|ZP_07633423.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium cellulovorans 743B] gi|302577274|gb|ADL51286.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] Length = 444 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 31/240 (12%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y LD NTG +I D PAS+TKLM+A L EK +T + NA Sbjct: 36 YAITLDVNTGEIIYAKNADAKAYPASITKLMSA-----ILLEKNLSKEDLLTYTANAKVQ 90 Query: 90 PPSNSTFKK-----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK----KFVQHMNN 140 P S + G ++ D ALK +++ SAND+ +A ++ K +F+ MN Sbjct: 91 PSSAINTDRLSVPVGQQISADTALKTMLLASANDMTEMVATNIPKRNSNDNTEFIAMMNA 150 Query: 141 TSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTD------FPQYMHYFQIKG 192 ++ LG+ THF+ ++G+ + H TTA D+ IL + + +P I G Sbjct: 151 EAQRLGMVNTHFVTSNGLDDNTNEHLTTAYDLTILGREVAKNPWTREIWPLKSTIIAIPG 210 Query: 193 L---EIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 L EI YPN T +G+ KTG+T +G +++ + ++ +I V+L + Sbjct: 211 LASFEIGNTNQFVYPNFELHDPTCIGS---KTGYTDKAGRCLLSIFERDNRQIIGVVLNS 267 >gi|299538496|ref|ZP_07051779.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1] gi|298726083|gb|EFI66675.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1] Length = 305 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 17/228 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ + ++ + + PASLTK+MT V + + + P I ++ E S Sbjct: 60 LVNLDENQIVLDKKSEEKIYPASLTKMMTVLVAIEQISNLQEEIILPKHIFRDLLEENAS 119 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F +T+++ L ++ S + ++ +AE + +E+ FV+ MN ++ LG+ THF Sbjct: 120 VAGFLPNEKVTVEDLLYGSMLPSGAEASLGLAEYVAGSERGFVKLMNEKAQQLGMKNTHF 179 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKT--DFPQY--MHYFQIK-------GLEIKGKKYP 201 +N G+ HYTT +DM++L T DF + IK G+ + + Sbjct: 180 VNTTGLHHSDHYTTVKDMSLLLQYALTNDDFRNVYTAERYSIKSTNLHPEGITFTSRMFQ 239 Query: 202 N-TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + T+ A+ G LG KTG+T +G + + A+ Q + V +GA Sbjct: 240 HMTSSALPGGEILGG---KTGYTEDAGLCLASLALINGQEYVLVTVGA 284 >gi|295110005|emb|CBL23958.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 378 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK++TA + F K + + +TIS+ E F++G +T+D + Sbjct: 154 PASITKIITALLAF-----KNSNMDDVVTISQENITLEEGSQVVGFQEGDQVTMDQLVHC 208 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+V S ND A AIA + T + FV MN + LG + THF N HG+ HYTT D+ Sbjct: 209 LLVYSGNDAASAIATHVGGTTENFVSMMNEYAAQLGCTGTHFTNPHGLQDENHYTTPYDI 268 Query: 171 AILSWRIKTDFPQYMHYFQI 190 ++ + ++P++ Q+ Sbjct: 269 YLM-LKEALNYPEFTEITQM 287 >gi|238917952|ref|YP_002931469.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC 27750] gi|238873312|gb|ACR73022.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC 27750] Length = 464 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 110/256 (42%), Gaps = 35/256 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 L+D +TG ++ E PAS TK++T L + + +T S+ A+ Sbjct: 65 LVDADTGSILFERNSHEKCYPASTTKILTG-----LLTIENCNMDDVVTFSQAAATSINI 119 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y +N K G T++ L L++ SAN++A A+ E + + FV MN +K LG Sbjct: 120 YEDANLGCKVGEQFTVNQLLHGLLLYSANEMAYALGEHVAGSIDAFVDMMNAKAKELGAL 179 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSW---------RIKTDFPQYM---------HYFQI 190 THF NA G+ HYTTA DMA+++ I + Y+ + Sbjct: 180 NTHFANASGLYNTNHYTTAYDMAMIARGCYNNASFVSIDSTADAYVIPATNMSAQRTIRH 239 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +KG+ Y + G KTG+T S +V A + LI V+ + Sbjct: 240 RHKMLKGRSYY--------YEYCKGGKTGYTDESQNTLVTFAEKDGMRLICVVFKEATDD 291 Query: 251 TRNKVSASLLSMGFYN 266 R + +L GF N Sbjct: 292 LRYTDTKTLFDWGFSN 307 >gi|297158599|gb|ADI08311.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis BCW-1] Length = 297 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 24/252 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +++ TG + D + S TK+MTA VV L + L +T+ K S+Y Sbjct: 48 VMNNGTGKALYTKAADTRLSTGSTTKIMTARVV---LAQPNLNLDAKVTVQKAYSDYIVD 104 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNT 141 S++ G +T+ L L++ S D A A+A+ K F+ MN+T Sbjct: 105 NNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNST 164 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----- 196 +K+LGL+ THF + G+ +Y+T RD+ L+ + + + K + K Sbjct: 165 AKSLGLTNTHFDSFDGIGHGANYSTPRDLTKLA-SSAMKYSTFRTVVKTKSTKQKVTTKS 223 Query: 197 -GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G +Y NTN +GT+ GA G+KTG + + +V +A + +++I +L + + R Sbjct: 224 GGYRYMDWTNTNPLLGTYSGAIGVKTGSGPEAKYCLVFAATRNSKTVIGTVLASSSVDNR 283 Query: 253 NKVSASLLSMGF 264 + LL+ GF Sbjct: 284 TADAKKLLNYGF 295 >gi|307326560|ref|ZP_07605754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] gi|306887754|gb|EFN18746.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] Length = 313 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 24/237 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 LLD NT + D AS TKLMTA VV L + L +T+ ++ +Y Sbjct: 51 LLDNNTNKELWAKAADTKRPMASTTKLMTAVVV---LDTRGLELGKKVTVKQSYIDYTAR 107 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CKTEKKFVQHMNNTS 142 S + +KG +T+ L L++ S D A+A+A++ K K F+ MN + Sbjct: 108 VGGSKADLQKGDKLTVKQLLYGLLLPSGCDAAMALADTFGTGDTTAKRTKSFIAQMNKKA 167 Query: 143 KNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTD-----FPQYMHYFQIKGLEIK 196 LG++ +H+ G+ + G YTT RDMA L+ + + + Q K Sbjct: 168 SALGMTKSHYDTFDGISEGGQNYTTPRDMAKLARHALGNSTLGTVVKSVDTIQ-KAPAAN 226 Query: 197 GKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 G+ + NTN +G++ GA G+KTG A G +V +A + ++++ VIL A R Sbjct: 227 GRTRTYYWNNTNRLLGSYSGAIGIKTGTGTAPGRCLVFAAKRDGRTVVGVILNAPKR 283 >gi|227524973|ref|ZP_03955022.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii ATCC 8290] gi|227087885|gb|EEI23197.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii ATCC 8290] Length = 421 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92 +D +TG ++ E P AS++KLMT Y+V ++E K + IS ++ + Sbjct: 45 VDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLSWNDQVKISPAVAKLSTAS 104 Query: 93 ---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 N K G + + + LK ++ SAN A+A+ + + + F M T++ LG+ Sbjct: 105 GLTNVPLKSGKSYKVRDLLKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGLGIKD 164 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 F NA G+ + +A+D+A+L+ R++ FP + + Sbjct: 165 AKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITRQTQMNF 224 Query: 196 KGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G Y N A G + +G+KTG + +G S + ++ V+LGA Sbjct: 225 SGNSYAGHNQLLDDRQIAKGAVV--NGLKTGTSDEAGACFAGSTTYHGRRIVTVVLGA 280 >gi|229099467|ref|ZP_04230396.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|229118482|ref|ZP_04247836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228665052|gb|EEL20540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228683963|gb|EEL37912.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 301 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRQQTVRVDQPSITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKENE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ I+ +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 200 IAIIT-KEALKYPIVLQYM 217 >gi|160935578|ref|ZP_02082953.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC BAA-613] gi|158441322|gb|EDP19032.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC BAA-613] Length = 418 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 59/303 (19%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ D AS TK+MT + + + A + S NA+ P Sbjct: 51 LMDGDTGRILYGKGQDIIRPMASTTKIMTCILALENGRGEDA-----VKASSNAASQPKV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G L++ L L+++S ND AV IAE + + + F MN + LG T+F Sbjct: 106 HLGVREGEEYRLEDLLYALMLESYNDAAVMIAEHIGGSVEGFAAMMNEKAAGLGCGDTYF 165 Query: 153 MNAHGV---------VQHGHYTTARDMAILSWRIKTDFP---QYM-------HYFQIKGL 193 + +G+ +H H TTA D+A + T+ P +++ HYF Sbjct: 166 ITPNGLDGVKTDEQGKEHIHSTTASDLARIMRYCVTESPAKDEFLKITQTQNHYFT---- 221 Query: 194 EIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 ++ GK+ N N + G KTGFT +G++ V GA++ Sbjct: 222 DMAGKRSFNCYNHNAFLTMMEGVLSGKTGFTGGAGYSYV---------------GAMENQ 266 Query: 251 TRNKVSASLLSMGF-----YNKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTT 299 R V A LL G+ Y +D +K+ ++ +KD +Q+ VP +S +C Sbjct: 267 GRTYVIA-LLGCGWPPHKTYKWSDARKLYTYGLEHFKMKDVFQEETFARVP-VSGGLCWK 324 Query: 300 QKE 302 + E Sbjct: 325 EGE 327 >gi|229076391|ref|ZP_04209356.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] gi|228706826|gb|EEL59034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] Length = 301 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKENE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ I+ +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 200 IAIIT-KEALKYPIVLQYM 217 >gi|154504456|ref|ZP_02041194.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149] gi|153795231|gb|EDN77651.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149] Length = 468 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 32/235 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+G V+ + PAS+TK+++ + K ++ + +IS ++ + Sbjct: 80 VMDMNSGAVLYAKKAEEKRYPASITKVLSVLTALQYAKMSDTVVFSEDSIS--FLQWDDA 137 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-----KKFVQHMNNTSKNLGL 147 K G +++++AL +++ SAN+++ A+AE++ K +F++ MN S+ LG Sbjct: 138 QIGMKPGEEISMESALYGMLLASANEVSYAVAENVGKQYLNGGYAEFIEEMNRISQELGC 197 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTN-- 204 ++++++NA+G+ HYTTA DMA RI Q + +++ LE K P TN Sbjct: 198 TSSNWVNANGLHDDNHYTTAHDMA----RIAAAAYQNEEFRRLETPLEY---KVPPTNLT 250 Query: 205 -------------WAVGTFLGADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 W + A+ KTG+T S +V A D L AV+L Sbjct: 251 AEERILDQNHKMLWPENYYYYANAKAGKTGYTDQSKTTLVTMAEGNDMQLAAVVL 305 >gi|255994530|ref|ZP_05427665.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC 49989] gi|255993243|gb|EEU03332.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC 49989] Length = 447 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 28/232 (12%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +TG VI + D PAS TK+MTA + + +K ++ P A+E Sbjct: 47 DCDTGEVIYQRNADKSVAPASTTKIMTALLTIENVNLQK-VVEVP-----QAAEGLKDGI 100 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + G M + + L L++ SA+D A+ +A ++ + +KF + MN +K LG T F N Sbjct: 101 NLRTGEKMRIIDLLHGLLIASADDTAIVLAYAVSGSVEKFAEKMNQKAKELGCKNTTFKN 160 Query: 155 AHGVVQHGHYTTARDMAILS---------WRIKTDFPQY----MHYFQIKGLEIKGKKYP 201 +G+ + GH +TA D+ I+S +I T QY + ++ L+ + Sbjct: 161 PNGIDEAGHQSTAYDLFIMSNEFMKNKLMRKIVTKL-QYTIPATNKSGVRVLQNHNRLLF 219 Query: 202 NTNWAVGTF--------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +TN V F GA G+KTG T +G +++ A + + +V++G Sbjct: 220 DTNHNVEVFGQLRPAYYEGALGLKTGDTVNAGACLISMAKRHGVEVCSVVMG 271 >gi|298241559|ref|ZP_06965366.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297554613|gb|EFH88477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 313 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 29/209 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNST--FKKGSTMTLDNALKL 110 AS TK+MTA V + + L +T+ + + + PP S G + + + L Sbjct: 97 ASTTKIMTAVVTI-----ENSNLDQIVTVQQADLDQLPPEASVAQLHVGDYLRIRHLLYG 151 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S +D A+ +A + + FV MN ++ LGL+ THF + HGV+ G+Y++A+D+ Sbjct: 152 LLLPSGSDAALTLARVVGGSTDGFVAMMNAKAQALGLAHTHFSSPHGVIPDGNYSSAQDL 211 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------------NTNWAVGTFLGADGMK 217 L+ +Y +QI ++ +Y NTN + ++ G G+K Sbjct: 212 VKLA--------RYAMRYQIFAEIVRQTEYHIPPTQYNRRYDWYNTNQLLTSYSGVIGIK 263 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGA 246 TG +G+ +V +A++ ++ L LGA Sbjct: 264 TGSGSGAGYCVVFAAVRNNRLLYGAELGA 292 >gi|302552772|ref|ZP_07305114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] gi|302470390|gb|EFL33483.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] Length = 277 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 23/252 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +++ TG + D + S TK+MTA VV LK+ L + +T+ K S+Y Sbjct: 27 VMNNATGKSLYTKAADTRRSTGSTTKIMTALVV---LKQSNLNLDSKVTVQKAYSDYIVE 83 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNT 141 SN+ G +T+ L L++ S D A A+A+ K F+ MN+T Sbjct: 84 NNWASNAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNST 143 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYM--------HYFQIKG 192 +K+LGLS THF + G+ + +Y+T RD+ I S +K + + G Sbjct: 144 AKSLGLSNTHFDSFDGIGKGSNYSTPRDLTKIASAAMKNSTFRTVVKTKKYTAKTTTKSG 203 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + NTN + ++ GA G+KTG + + +V +A + +++I +L + + +TR Sbjct: 204 GTRTMAPWENTNPLLSSYSGAIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASTNLDTR 263 Query: 253 NKVSASLLSMGF 264 + LL+ GF Sbjct: 264 KSDATKLLNYGF 275 >gi|229026472|ref|ZP_04182829.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228734935|gb|EEL85573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] Length = 279 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 17/185 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAHRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVKEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILS 174 +AI++ Sbjct: 178 IAIIT 182 >gi|225575670|ref|ZP_03784280.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM 10507] gi|225037127|gb|EEG47373.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM 10507] Length = 337 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 73/143 (51%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L+ +TG I + + PAS+TK+MTA V + L + + +T + +E Sbjct: 62 YAVLIRRSTGEKIFDLRSEEKMFPASMTKMMTALVAYEQLSDLQTKITLNPDMFDKLTEE 121 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + F G +T + L +++ S + + +AE + E+ FV+ MN + LG++ Sbjct: 122 GASMAGFSAGEEVTALDLLYGVLLPSGAECCIGLAEYIAGDEESFVELMNQKATELGMNH 181 Query: 150 THFMNAHGVVQHGHYTTARDMAI 172 THF N G+ HYTT DMAI Sbjct: 182 THFCNPTGLHDENHYTTVSDMAI 204 >gi|229105624|ref|ZP_04236258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228677894|gb|EEL32137.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 301 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ D Sbjct: 25 RTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIAKMMTTLLLLENVKENE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ I+ +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 200 IAIIT-KEALKYPIVLQYM 217 >gi|325571073|ref|ZP_08146645.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus casseliflavus ATCC 12755] gi|325156158|gb|EGC68344.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus casseliflavus ATCC 12755] Length = 411 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +TG V+ + + AS+TK+++ Y+V +++ P+ IS N S P Sbjct: 83 IDFDTGKVLYDQDGETAMGIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSP 142 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + T T+ + ++SAN VA+AE + +E FV M ++ G++ Sbjct: 143 NLSNVPLHQDVTYTVKDLYDASYIQSANAAIVALAELIAGSESAFVDQMQEKVQSWGITD 202 Query: 150 THFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + G +T A+D+A+++ + DFP + + + Sbjct: 203 AKIVNASGLNNTYLGDNIYPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQF 262 Query: 196 KGKKYP-----NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 Y N NW + F G DG+KTG T +G V +A++ Q +I V+L Sbjct: 263 GEGSYSPVEMVNWNWMLPGFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 320 >gi|309775554|ref|ZP_07670554.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] gi|308916648|gb|EFP62388.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] Length = 337 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 27/213 (12%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D + AS++K+MTA + K L T+ + ++ S+ K+G T+TL + Sbjct: 50 DDKQSVASISKIMTAVIAIEHGK-----LDEAFTVDEEINKAYGSSVYLKQGQTVTLRDL 104 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT 165 L L+++S ND AV IA+ + +++ FV+ MN + +G+S T F N G+ + G+ + Sbjct: 105 LYALMLRSGNDAAVEIAKHVSGSQEAFVEAMNQKAAEIGMSNTTFSNPSGLDEEDGGNIS 164 Query: 166 TARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG---------TFLGADG 215 TA DMAIL S+ +K F+ I G KY T+W + + G Sbjct: 165 TANDMAILMSYAMKN------KEFRT----ITGSKYYTTDWNMRWKNKNRLLFDYPFTIG 214 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 KTGFT +G +V +A I V L D Sbjct: 215 GKTGFTKKAGRTLVTAAEHDGVESIVVTLREGD 247 >gi|295693488|ref|YP_003602098.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1] gi|295031594|emb|CBL51073.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1] Length = 433 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNAAQTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M + K G+ Sbjct: 115 EY--SNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRDQVKKWGI 172 Query: 148 ------SATHFMNAH-------GVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGL 193 +A N + GV ++ T +A+DMAI+ ++ + FP+ + ++ L Sbjct: 173 EDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLAHL 232 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + L+ V+ Sbjct: 233 NFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLTVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|313683330|ref|YP_004061068.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum kujiense DSM 16994] gi|313156190|gb|ADR34868.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum kujiense DSM 16994] Length = 275 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 20/226 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA + ++ LT + ISK + P+ + +K+G L + + + Sbjct: 56 PASLTKIMTATLAI-----EQGELTRLVVISKEMLQVEPTKAGYKEGEIFLLGDLINAAM 110 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 +KS ND A+A+A ++ + + F + MN + ++G+ T F N G H++T +D+ Sbjct: 111 IKSDNDAAMAVAIAIGGSIENFNKMMNAKAASIGMVNTVFTNPCGFDIGNHHSTPQDLLT 170 Query: 173 LS-WRIK-------TDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFLGADGMKTGFTCA 223 L+ + IK T Q+ +Y L K NT N + + A G+KTG+T Sbjct: 171 LAEYAIKNPVFNDITRLNQHTYY----SLNTARKFVANTHNQLLNKYEYAVGVKTGYTSK 226 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G ++A A + D+ + V+L + + R K + + F D Sbjct: 227 AGPCLIARAKKEDRDCLIVMLNS--KENRWKTAKEIFEQVFVPSQD 270 >gi|311070657|ref|YP_003975580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310871174|gb|ADP34649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 441 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 50/317 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ + E K T E Sbjct: 45 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDEGKVKWDQTYTPDDYVYEISQD 104 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + SAN A+A+AE + +E KFV MN +K LGL+ Sbjct: 105 NSLSNVPLRKDGKYTVKELYQATAIYSANAAAIALAEVMAGSETKFVDKMNAKAKELGLT 164 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ V +A+DMAIL+ R+ TD+P+ + I + Sbjct: 165 NFKFVNATGLENKDLHGKQPEGTSVDEESEVSAKDMAILADRLITDYPEILDTASIAKTK 224 Query: 195 IKGK-----KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + PN N+ V + G DG+KTG T ++G ++A + +I V+L Sbjct: 225 FREGTDDEMDMPNWNFMLKGLVSEYKGVDGLKTGSTDSAGSCFTSTAERNGMRVITVVLN 284 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 A + G +++T +K +NY +F + E+ K++ Sbjct: 285 A----------KGNIHTGRFDET-KKMLNYAFDNFSMK-----------EIYAEGKQVKG 322 Query: 306 YNT-QMKEAKDKESHFI 321 + T +++ KDKE + Sbjct: 323 HKTISVEKGKDKEVGIV 339 >gi|76789288|ref|YP_328374.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis A/HAR-13] gi|237802980|ref|YP_002888174.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis B/Jali20/OT] gi|237804902|ref|YP_002889056.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis B/TZ1A828/OT] gi|76167818|gb|AAX50826.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis A/HAR-13] gi|231273202|emb|CAX10115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274214|emb|CAX11008.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis B/Jali20/OT] Length = 437 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 33/273 (12%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +F + +A LS FP + T K ++ ++G ++ E DH PAS+TK+ Sbjct: 9 RFFICLAPFFLS--FPLYADPHTVLTKGIVAAVVHADSGAILKEKNLDHKIFPASMTKIA 66 Query: 61 TAYVVFS--------FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLD------ 105 TA ++ F+ ++ LT+ +K S Y P + G T+ L Sbjct: 67 TALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEEVS 126 Query: 106 --NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L++ SAND A +A++ C++ F++ +N + LG THF + HG+ H Sbjct: 127 GWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHPDH 186 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGT-----FLG 212 YTTARD++++ + P + + ++ + +TN + + + Sbjct: 187 YTTARDLSLIMKEALKE-PLFRQVIRTASYTMEATNLSPERVLSSTNKLLSSSSTYFYPP 245 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G KTG T ++G NI+ +A + ++S+I V G Sbjct: 246 CLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAG 278 >gi|167758172|ref|ZP_02430299.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704] gi|167664069|gb|EDS08199.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704] Length = 342 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 11/146 (7%) Query: 33 LLDTNTGHV-IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90 L D G V A N D + PAS TK+MTA V KK LT +T+ +A Sbjct: 82 LFDVEDGKVDFAYNLHDRLY-PASTTKIMTALVAL-----KKGNLTDMVTVQADADAANF 135 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 K G MTL + L L+++S ND AVAIA+ + ++F Q MN ++ L Sbjct: 136 AADEKTCGIKAGDQMTLGDLLHGLLMESGNDAAVAIADYIGGNSEQFAQMMNEEAQALMA 195 Query: 148 SATHFMNAHGVVQHGHYTTARDMAIL 173 + THF+N++G+ HYTTA D+ ++ Sbjct: 196 TKTHFLNSNGLHNENHYTTAYDLYLI 221 >gi|229163983|ref|ZP_04291922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228619485|gb|EEK76372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 273 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y + +TG ++ D PAS+ K+MT ++ +KE + ITI++NA + Sbjct: 35 YGITIAADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITITENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +FV+ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNERAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPN-TNW 205 F NA G G+ + D+AI++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSS----TRTQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|291528982|emb|CBK94568.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1] Length = 301 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY++ K L +T+S +A+ S+S K+G +T+ + L Sbjct: 77 PASTTKILTAYIIL-----KNCDLNATVTVSHDAANPGHSSSVCGLKEGDVITVQDLLYG 131 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+++S ND A+A+AE + ++F + MN+T+K+ G + + F+N G+ HYTT DM Sbjct: 132 LLLESGNDAAIALAEYCSGSVEEFAKLMNSTAKSFGATNSSFVNPSGLPDENHYTTIYDM 191 Query: 171 AIL 173 ++ Sbjct: 192 YLI 194 >gi|22536332|ref|NP_687183.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae 2603V/R] gi|76787943|ref|YP_328878.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909] gi|22533156|gb|AAM99055.1|AE014198_3 D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae 2603V/R] gi|76563000|gb|ABA45584.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909] Length = 411 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 35/278 (12%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +I ++ +LS IF P +S N + L +D ++G ++ E + P ASLTK+MT Sbjct: 4 IITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMTV 63 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKGSTMTLDNALKLLIVK 114 Y+V+ + T + IS +YP SN +K T+ + ++ Sbjct: 64 YMVYKEIDNGNLKWNTKVNIS----DYPYQLTRESDASNVPLEK-RRYTVKQLVDAAMIS 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT------- 165 SAN A+A+AE + TE KFV M + G+ +H +NA G+ G++ Sbjct: 119 SANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQN 178 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +ARD+AI+++ + ++P + + + N+ + G G+ Sbjct: 179 DENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 239 KTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 275 >gi|225574473|ref|ZP_03783083.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM 10507] gi|225038323|gb|EEG48569.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM 10507] Length = 409 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 18/232 (7%) Query: 48 DHPWNPASLTKLMTAYVVF--SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 D P+S+TK+MT + S L + M T S N S + + G T T++ Sbjct: 74 DAALYPSSITKIMTTLIALENSSLADTVTMTQTGTAASGNGS----VSLNAQVGETFTME 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 L +++ SANDI+ IAE + + + FV MN +K+LG + T+F N G+ + Sbjct: 130 QCLYAIMLGSANDISTQIAEQVGGSVENFVTMMNQKAKDLGCTNTNFTNPTGLPDEKQTS 189 Query: 166 TARDMA-ILSWRIKTDFPQYMHY---FQIKGLEIKGKK------YP-NTNWAVGTFLGAD 214 TA D+A I+ +K + Q + + I + + +P +T + + G Sbjct: 190 TAYDLALIMQAALKNESFQTIASAMTYTIPATNLTSAERNLTNNFPLSTATSASYYEGTL 249 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G K+G+T ASG + A A + +LI V+L ++ + + +LL GF N Sbjct: 250 GGKSGYTEASGSTLAAGASRNGTTLICVVLSGTEQQVPPE-AITLLDYGFSN 300 >gi|46446028|ref|YP_007393.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) [Candidatus Protochlamydia amoebophila UWE25] gi|46399669|emb|CAF23118.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) [Candidatus Protochlamydia amoebophila UWE25] Length = 456 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 51/347 (14%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ II+ ++ S F E LL+ +G ++ E PAS TK+ TA Sbjct: 40 FVTIISFSLRSAPLDFKIAGEAA-----ILLNAESGAILFEQEAYSCQFPASTTKVATAL 94 Query: 64 VVFS-------FLKEKKAMLTTPITISKNASEYPP--------SNSTFKKGSTMTLDNAL 108 S + ++ LTT +K + Y P S+ KKG M+L + L Sbjct: 95 YALSKKQDLNQMMAAEQDSLTTLSQEAKKKTNYDPPYRLEPDGSHIGLKKGEMMSLHDLL 154 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +++ S ND A IA +L T F+ +N K +G T F N HG+ H TTA Sbjct: 155 GGMLIPSGNDAANVIANALGPTIPVFMAELNIYLKKIGCEKTTFYNPHGLHHPQHQTTAY 214 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFL--------------- 211 D+A+++ + P + I KKY P TN T L Sbjct: 215 DLALIT-KEALKQPVFCEL-------IGQKKYLRPKTNKQAATTLLQTNRLIRPGSFYYS 266 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 A G KTG+ + + A +++LI V+LG +RNT + + L F ++ Sbjct: 267 KAIGGKTGYHAKAKKTYIGVARSEERTLIVVLLGYQERNTIFQDAIKLFDAAF----NQP 322 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 KI +Q+ ++ +P + + T KE + + + A+D E+ Sbjct: 323 KIQRTFLKEGRQSFAHNLPKAACPLQTHLKEPLKLDYYL--AEDPEA 367 >gi|225866993|ref|YP_002752371.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB102] gi|225787746|gb|ACO27963.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102] Length = 279 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 27/281 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ + Y +D +TG ++ D Sbjct: 3 RTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERS 62 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ + E + IT+++NA +E + G + D ALK Sbjct: 63 YPASIAKMMTTLLLLENVTEDE-----EITVTENAIKTESQSKKIKLRAGEKLKRDEALK 117 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 118 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 177 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNWAVGTFLG---ADGMKTGFTCAS 224 +A+++ + +P + Y + ++ PN N+ A G K+G + Sbjct: 178 IAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALG 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +V + + +I V+L + TR ++ M Y Sbjct: 237 KYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKMAHY 273 >gi|153810801|ref|ZP_01963469.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174] gi|149833197|gb|EDM88279.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174] Length = 393 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 19/267 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ + + P AS TK+MT + K + +S NA P Sbjct: 40 LMDGDSGRVLYQKSGNTPRPNASTTKVMTCILALENGKGDDY-----VKVSANAVSQPEV 94 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G L++ L L+++S ND AVAIAE + + F MN +K +G THF Sbjct: 95 RLGLSIGEQYYLEDLLYSLMLQSHNDSAVAIAECIGGSVDNFSAMMNAKAKEIGCKNTHF 154 Query: 153 MNAHGVVQHG----HYTTARDMA-ILSWRIKTD-FPQYMHYFQIKGLEIKGKKY---PNT 203 + +G+ H+TTA D+A I+ + I D F + + ++ K++ NT Sbjct: 155 VTPNGLDAENSGGTHHTTAEDLALIMRYAIHNDVFLKITQTEEYSFSDLSKKRHFSVHNT 214 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + G KTG+T +G+ V + + +++ I +LGA + +N L + Sbjct: 215 NALLHMTDGVLAGKTGYTGDAGYCYVCACQKDNKTFIIALLGAGWPDHKNYKWHDTLELL 274 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVP 290 Y + NY + F+Q+ + +P Sbjct: 275 NYGNS-----NYEYRSFWQEPELSYIP 296 >gi|229158612|ref|ZP_04286671.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228624926|gb|EEK81694.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] Length = 273 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ D PAS+ K+MT ++ +KE + IT+++NA + Sbjct: 35 YGITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKEDE-----EITVTENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ IA +IAE + ++ +F++ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFLKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN-TNW 205 F NA G G+ + D+A+++ + +P + Y + ++ PN N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAMIT-KEALKYPVVLEYMNSTRTTLHTSERSPNIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + + +I V+L + TR ++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVLSS----TRKQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|77411808|ref|ZP_00788143.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae CJB111] gi|77162143|gb|EAO73119.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae CJB111] Length = 411 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 35/278 (12%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +I ++ +LS IF P +S N + L +D ++G ++ E + P ASLTK+MT Sbjct: 4 IITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMTV 63 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKGSTMTLDNALKLLIVK 114 Y+V+ + T + IS +YP SN +K T+ + ++ Sbjct: 64 YMVYKEIDNGNLKWNTKVNIS----DYPYQLTRESDASNVPLEK-RRYTVKQLVDAAMIS 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT------- 165 SAN A+A+AE + TE KFV M + G+ +H +NA G+ G++ Sbjct: 119 SANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQN 178 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +ARD+AI+++ + ++P + + + N+ + G G+ Sbjct: 179 DENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 239 KTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 275 >gi|257462931|ref|ZP_05627336.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12] gi|317060551|ref|ZP_07925036.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12] gi|313686227|gb|EFS23062.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12] Length = 379 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 15/219 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT V F ++ +A L + I+K+ S + K G T TL + ++ + Sbjct: 158 ASVTKVMTLLVTFDAIRNGEAHLEDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 217 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYT------ 165 SAN+ A A+A+ + K F++ MN ++ +G+S + + G+ YT Sbjct: 218 YSANNAAYAVAKHIGKGSISNFIKKMNKKAREMGISKEISYYSPAGL--PSRYTKEPMDI 275 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTC 222 TAR + LS +P+YM IK ++I K N N +G G G+KTG+ Sbjct: 276 GTARGIYKLSLEA-IKYPEYMKIAGIKQMKIHHGKINIRNRNHLIGEE-GIYGIKTGYHK 333 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +NI ++ G + I VILG R+ LL Sbjct: 334 EAKYNITVASKDGSREFIVVILGGESYKDRDNAVLRLLE 372 >gi|145512197|ref|XP_001442015.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124409287|emb|CAK74618.1| unnamed protein product [Paramecium tetraurelia] Length = 302 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 25/250 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEY 89 + ++D+N+G V+ + AS+TK+MT YVV S K T +S AS Sbjct: 46 WIVVDSNSGDVLYAYNENQRREIASITKIMTFYVVLSMCKTMNVQTNNTYAEVSLQASLV 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-----SLCKTEKK-------FVQH 137 + + KG +++D+ L++ S ND A+ AE ++ + + K F+Q Sbjct: 106 GGTTANLLKGDILSIDDLFYGLMLPSGNDAAMTFAENFGIYAMYQNKIKGNNPIIYFIQE 165 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQ-----YMHYFQIK 191 MNN ++ L ++ T + N HG+ + ++A D+A L + +K DF + +H+ I+ Sbjct: 166 MNNKARELRMTQTTYANPHGLNNKNNLSSAYDVAKLCNQLLKDDFFKKVVNTKIHFCTIQ 225 Query: 192 GLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 E + + NTN + + G G+KTG T +G + + ++S VILG R Sbjct: 226 DEEGFTRDVMWENTNKLL--YQGFRGIKTGNTSVAGPCLASYYQSNNRSFTIVILGC--R 281 Query: 250 NTRNKVSASL 259 N ++ S ++ Sbjct: 282 NQEDRWSETM 291 >gi|300854622|ref|YP_003779606.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434737|gb|ADK14504.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium ljungdahlii DSM 13528] Length = 325 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 25/212 (11%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNAL 108 PASLTK+MTA V L L + ++ +A S + F+ +T + L Sbjct: 98 PASLTKMMTAIVAIENLPN----LNEEVKLTNSAFHELHGEDASMAGFQPNEQVTALDLL 153 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +++ S + + +AE + +E+ FV+ MN + LG+ THF N G+ HYTT + Sbjct: 154 YGILLPSGAECCIGLAEQIAGSEQNFVKMMNQKAAELGMRNTHFENTTGLQNENHYTTVK 213 Query: 169 DMAI-LSWRIKTD-----FPQYMHYFQIKGLEIKG--------KKYPNTNWAVGTFLGAD 214 D+AI LS+ ++ D F H Q G K N N G LG Sbjct: 214 DLAILLSYALQNDTFREIFTSSRHSTQPTNKHPGGITFYSTMFKGLNNQNIIGGEILGG- 272 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 KTG+T +G + + A G Q I + GA Sbjct: 273 --KTGYTNEAGLCLASLAKVGKQDYILISAGA 302 >gi|227509080|ref|ZP_03939129.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191467|gb|EEI71534.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 421 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92 +D +TG ++ E P AS++KLMT Y+V ++E K + IS ++ + Sbjct: 45 VDADTGQILYEKNAHQPLAIASISKLMTVYIVRKQIQEGKLSWNDQVKISPAVAKLSTAS 104 Query: 93 ---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 N K G + + + +K ++ SAN A+A+ + + + F M T++ LG+ Sbjct: 105 GLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGLGIKD 164 Query: 150 THFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 F NA G+ + +A+D+A+L+ R++ FP + Sbjct: 165 AKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITGQTQMTF 224 Query: 196 KGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G Y N A G + +G+KTG + +G SA + ++ V+LGA Sbjct: 225 AGNSYAGHNQLLDDRQIAKGAVV--NGLKTGTSDEAGACFAGSATYHGRRIVTVVLGA 280 >gi|182417161|ref|ZP_02948532.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum 5521] gi|237668489|ref|ZP_04528473.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379003|gb|EDT76509.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum 5521] gi|237656837|gb|EEP54393.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 427 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 6/155 (3%) Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 ++ K G TM+ D+ +K L++ S ND A IA+++ +KF MN +K +G + +HF+ Sbjct: 107 NSMKVGDTMSADDVMKGLLLFSGNDTAYMIADNVAGNSQKFADMMNAKAKEIGANNSHFV 166 Query: 154 NAHGVVQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 A+G+ HYTTA D+++++ + D+ + ++I G K N +G LG Sbjct: 167 TANGLHDENHYTTAYDLSLITKAAFQNDWERETMELADASIQINGAKVLLENRNLG--LG 224 Query: 213 ADG---MKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G KTG T A+G + A + LI V+L Sbjct: 225 KNGNIAGKTGLTNAAGGCLAAVYEVNGRKLIGVVL 259 >gi|195953485|ref|YP_002121775.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Hydrogenobaculum sp. Y04AAS1] gi|195933097|gb|ACG57797.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Hydrogenobaculum sp. Y04AAS1] Length = 407 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 27/237 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEY 89 Y ++ T +I++N W AS+ K+MTAY++ IT++ K +EY Sbjct: 66 YGVIGTLQSGIISKNPNQGQWPLASVAKIMTAYIILKDHPLPIGQDGPTITVTQKEVNEY 125 Query: 90 PPSNSTFKK----------GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 FKK G +T L+ L++ SAN+ A +A + K FV MN Sbjct: 126 ----EAFKKDGQSVVKVALGEKLTERQLLEGLMIPSANNFAYILARWDAGSVKAFVDKMN 181 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK--GLEIKG 197 T+++LGL T + + G G +T +D L+ ++ P + H + L I G Sbjct: 182 KTAQSLGLKDTRYEDPSG-ASAGTVSTPKDQFKLT-QLAMQIPTFRHMVAMPQVNLPIAG 239 Query: 198 KKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +Y N N+ LG D G+KTG + +G N V + QG+ ++ VI GA +++ Sbjct: 240 IQY-NVNYD----LGKDNIVGVKTGSSLPAGANFVFDSKQGNIDILGVIFGASGKSS 291 >gi|229135841|ref|ZP_04264610.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228647630|gb|EEL03696.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 301 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51 R ++I+ +A L F S A+ ++ Y +D +TG ++ Sbjct: 25 RTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREGERS 84 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 PAS+ K+MT ++ +KE + IT+++NA +E + G + D ALK Sbjct: 85 YPASIGKMMTTLLLLENVKEDEE-----ITVTENAIKTESQSKKIKLRAGEKLKRDEALK 139 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ SA+ IA +IAE + ++ +FV+ MN +K LG F NA G G+ + D Sbjct: 140 LMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199 Query: 170 MAILSWRIKTDFPQYMHYF 188 +AI++ + +P + Y Sbjct: 200 IAIIT-KESLKYPIVLEYM 217 >gi|94993641|ref|YP_601739.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] gi|94547149|gb|ABF37195.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] Length = 410 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 23/231 (9%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSN 93 +G V+ E AS++KL+T Y+V+ + + K +P+TIS E Y SN Sbjct: 39 SGKVLYEKDAKEVVPVASVSKLLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISN 98 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K T+ L L+V +AN A+A+AE + TE KFV M + G+S + Sbjct: 99 VPLDK-RKYTVKELLSALVVNNANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVV 157 Query: 154 NAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 N+ G+ H G T A D+AI++ + +FP+ + G+ Sbjct: 158 NSTGLTNHFLGANTYPNTEPDDENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQT 217 Query: 200 YPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + N+ + G DG+ G++ +G + VA++++ +I V+L A Sbjct: 218 IYSYNYMLKGMPCYREGVDGLFVGYSKKAGASFVATSVENQMRVITVVLNA 268 >gi|257437711|ref|ZP_05613466.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257200018|gb|EEU98302.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 429 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 18/249 (7%) Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKK 98 I E D ASLTK+MTA + K+ A +T P ++++ + +N + + Sbjct: 55 ILEQNADQQRYIASLTKMMTALLFLESGKDMNAEITIPASLTQEFKDIQNANGSTINLRI 114 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHG 157 G T+ + L L+V SAND A AIA + + FV MN +K LG ++T F HG Sbjct: 115 GETVRRIDLLYGLLVASANDAASAIASDVSDGDLTAFVARMNQRAKELGCTSTSFTCVHG 174 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGAD-- 214 + +G+ ++A D+A+++ + + YM + + N T L + Sbjct: 175 LYDYGNVSSAHDLALIA-KACAENETYMQVANTLSYTLPATNLHQNERTITSTNLMLNPE 233 Query: 215 ---------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 GMKTGFT +G V A + + V+LG+ D + + ++ +L F Sbjct: 234 YPYYRDYIRGMKTGFTTLAGRCYVTFAQKDGHTYGLVVLGS-DLDNIYREASEILDWAFA 292 Query: 266 NKTDRKKIN 274 + +DR+ ++ Sbjct: 293 SFSDRELVD 301 >gi|152977277|ref|YP_001376794.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026029|gb|ABS23799.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 279 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 30/279 (10%) Query: 7 IIAMAMLSNIFP---FLSIAETNK----------LPYYTLLDTNTGHVIAENYPDHPWNP 53 II + M+S +F F S A+ K Y +D +TG ++ D P Sbjct: 5 IIMIVMISTLFIGMIFFSYAQRQKNIRADQPPITGKYGITIDADTGEILYGKREDERSYP 64 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK--KGSTMTLDNALKLL 111 AS+ K+MT ++ +K+ + ITI++NA + + K G + D ALKL+ Sbjct: 65 ASIAKIMTTILLLENVKKDE-----EITITENAIKTESQSKKIKLHAGEKLKRDEALKLM 119 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SA+ ++ +IAE + ++++FV+ MN +K LG F NA G G+ + D+A Sbjct: 120 LIISADPVSESIAEHIAGSKEEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIA 179 Query: 172 ILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGF 226 IL+ +P + Y L + N+ A G K+G + + Sbjct: 180 ILTKE-ALKYPIVLKYMNTTRTTLHTSERTVKLANYGREELYDDPYAIGSKSGLSALGKY 238 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +V + + +I V+L + TR+++ M Y Sbjct: 239 TVVTVDEKEGKRVITVVLSS----TRHELYPDTKKMAHY 273 >gi|262047823|ref|ZP_06020773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus MV-3A-US] gi|260571880|gb|EEX28451.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus MV-3A-US] Length = 433 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 115 EY--SNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKWGI 172 Query: 148 ------SATHFMNAH-------GVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGL 193 +A N + GV ++ T +A+DMAI+ ++ + FP+ + ++ L Sbjct: 173 EDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLAHL 232 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 233 NFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|266621645|ref|ZP_06114580.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288866679|gb|EFC98977.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 541 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 45/295 (15%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R ++ + +L FP ++A + + ++D +TG V+ + + PA Sbjct: 19 RMSAFLLCLMLLMGAFPATALAAPDWPSGVSVQAESGIVIDADTGTVLWGQNIHNQYFPA 78 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLL 111 S+TK+MTA +V + L +T S NA E SN+ +G +++ + L L Sbjct: 79 SITKIMTALIVI-----ETCSLDETVTFSHNAVFNVEAGSSNAGINEGDKLSVKDCLYAL 133 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++KSAN+ A A+AE + + + F MN +K LG + THF N G+ HYT+ DMA Sbjct: 134 LLKSANEAANALAEHVAGSTEAFADMMNAKAKELGCTDTHFANPSGLNDPEHYTSTYDMA 193 Query: 172 ILSWRIKTDFPQYMH-----YFQI-------KGLEIKGKKYPNTNWAVGT----FLGADG 215 +++ R P + Y+++ +GL I YP + + G G Sbjct: 194 LIA-RAAFLNPTFEEIDSTAYYKLPPNSINPEGLTI----YPGHKMLKKSTPYYYPGIVG 248 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDR---NTRNKVSASLLSMGFYN 266 KTG+T +G +V A + LIAVIL G+ + +T+N LL GF N Sbjct: 249 GKTGYTTLAGNTLVTCARKNGLKLIAVILKGSTPQYWTDTKN-----LLDFGFEN 298 >gi|229826630|ref|ZP_04452699.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC 49176] gi|229789500|gb|EEP25614.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC 49176] Length = 478 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG ++ + W PAS TK+MTA + K L + +K +A++ Sbjct: 65 VMDLATGTILVSKNGNKKWYPASTTKIMTAMLAIEHAKS----LDEEVEFTKEAIDAADR 120 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G +TL L L++ SAN++A A+A + F MN + LG + Sbjct: 121 GSSSIGITPGEKLTLRECLYGLMLASANEVANALAIHTAGSIDAFADMMNEKAAELGCTN 180 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYM--HYFQIKGLEIKGKKYPNTN- 204 THF N G+ + HYTT D+A I IK D F + + + + +K P +N Sbjct: 181 THFRNPSGLYEDDHYTTPADLAKIARAAIKIDAFKEIASTRKYVLPKTNLMKEKRPLSNT 240 Query: 205 --------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + KTG+T + FN+V+ +G ++ VI+ A R+ + Sbjct: 241 HQLFNPMQCPEHAYEYCYAGKTGYTREAKFNLVSYVKKGAMDVVCVIMNAESRDVQ 296 >gi|225570667|ref|ZP_03779690.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM 15053] gi|225160494|gb|EEG73113.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM 15053] Length = 405 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 42/273 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G V+ D AS TK+MT + ++E + S +A+ P Sbjct: 45 LMDADSGRVLFGKDEDVVRPMASTTKIMTCILALENMQEDQV-----TAASDHAASQPKV 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 K + + L L+++S ND AV IAE + + + F MN + LG S T+F Sbjct: 100 RLGVKGKEEFRIKDLLYSLMLESHNDSAVVIAEGIAGSVEAFAGMMNEKAAELGCSDTYF 159 Query: 153 MNAHGVVQHG----HYTTARDM-AILSWRIKTDFPQYMHYFQIKGLE------IKGKK-- 199 + +G+ + H TTARD+ AI+ + IK D P+ + ++ + +KG + Sbjct: 160 VTPNGLDGYDEGGTHSTTARDLAAIMKYCIK-DSPKKEQFLEVTRTKDYSFTNVKGDRSF 218 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + GA KTGFT +G+ V GAL+R+ R + A Sbjct: 219 SCSNHNAFLTMMDGALSGKTGFTADAGYCYV---------------GALERDGRTFIVA- 262 Query: 259 LLSMGFYN------KTDRKKINYIIKDFYQQNL 285 LL+ G+ N K RK + Y + ++ Q + Sbjct: 263 LLACGWPNNKGYKWKDTRKLMEYGVANYEYQTV 295 >gi|257867724|ref|ZP_05647377.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC30] gi|257874051|ref|ZP_05653704.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC10] gi|257801807|gb|EEV30710.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC30] gi|257808215|gb|EEV37037.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC10] Length = 444 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 39/280 (13%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LDTNTGHVIAENYPDHPW 51 F+ +A+ + + P +S A+ + + +D +TG V+ + + Sbjct: 11 FVAALAILFAAVVIPLVSYADDTAMSIEEIQDFSIDAKAAYSIDFDTGKVLYDQDGETAM 70 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPP-SNSTFKKGSTMTLDNA 107 AS+TK+++ Y+V +++ P+ IS N S P SN + T T+ + Sbjct: 71 GIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDL 130 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------V 159 ++SAN VA+AE + +E FV M ++ G++ +NA G+ + Sbjct: 131 YDASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENI 190 Query: 160 QHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVG 208 G +T A+D+A+++ + DFP + + + Y N NW + Sbjct: 191 YPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLP 250 Query: 209 TFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F G DG+KTG T +G V +A++ Q +I V+L Sbjct: 251 GFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 290 >gi|15894549|ref|NP_347898.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15024194|gb|AAK79238.1|AE007639_11 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325508682|gb|ADZ20318.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 425 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 152/335 (45%), Gaps = 44/335 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPP 91 L+D N+G ++ E + + PAS TK+MTA + K + K ++ T +K + Sbjct: 39 LMDGNSGQILYEKNMNASYPPASTTKIMTALLTLEKCKLDDKVKVSNDFT-TKYLALRDG 97 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++ G +T+ + L L++ SAND AVA+AE + + + F MN + LG + T+ Sbjct: 98 NSIGITNGEELTVRDLLHALLLISANDAAVALAEHISGSPQAFATLMNKKAAELGCTNTN 157 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIK---GLEIKGKKYPNT 203 F N +G+ H T+A+D+A++ + + +P+Y +Q+ ++ + K Sbjct: 158 FKNPNGLYDKDHKTSAKDLALIMKEL-SKYPEYQKISTTLNYQMSPTNNMDAEKTKKSRN 216 Query: 204 NWAVGTFLGAD---------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 W + + G K G+T S + V+ A + L+ ++ + ++ T Sbjct: 217 FWNEDKLVYKNSKNYYDKCIGGKAGYTILSLHSFVSVANNNGRKLVVALVHSKEK-TFYD 275 Query: 255 VSASLLSMGFYNKTDRKKI-------NYII----------KDFY--QQNLSNEVPNISEE 295 S +L GF N +K NY + +D+Y +N S VP + + Sbjct: 276 DSKALFEYGFNNFQQKKLFSKGDIVENYYLDGTKIPLLASEDYYYCTENGSKSVPKVQVD 335 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + +K+ + TQ+ AK ID ++I LK Sbjct: 336 KNSLKKKYFSKGTQIMAAKIS----IDGKQIGTLK 366 >gi|293379842|ref|ZP_06625964.1| beta-lactamase [Lactobacillus crispatus 214-1] gi|290923614|gb|EFE00495.1| beta-lactamase [Lactobacillus crispatus 214-1] Length = 433 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 115 EY--SNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKWGI 172 Query: 148 ------SATHFMNAH-------GVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGL 193 +A N + GV ++ T +A+DMAI+ ++ + FP+ + ++ L Sbjct: 173 EDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLAHL 232 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + LI V+ Sbjct: 233 NFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLITVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|291452581|ref|ZP_06591971.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074] gi|291355530|gb|EFE82432.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074] Length = 292 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 25/255 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G + D AS TK M VV L K L +T+ + +Y Sbjct: 28 LMDASSGKTVFSKSADTKRQMASTTKTMAVAVV---LDTKGVNLDKKVTVKQTYRDYVAK 84 Query: 93 NST----FKKGSTMTLDNALKLLIVKSANDIAVAIAES------LCKTEKKFVQHMNNTS 142 N + G +T+ L ++ S D A A+A++ + K F+ MN + Sbjct: 85 NGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISKMNAKA 144 Query: 143 KNLGLSATHFMNAHGVVQHGH-YTTARDMAILS--------WRIKTDFPQYMHYFQIKGL 193 K+LG++ T F + G+ + G+ Y+T RD+A L+ ++ KG Sbjct: 145 KSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKATAKGG 204 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + + NTN +G++ GA G KTG A+G ++ SA + +SL+ VIL D N R Sbjct: 205 GTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVILN--DSN-RY 261 Query: 254 KVSASLLSMGFYNKT 268 + +L GF KT Sbjct: 262 ADAGKMLDYGFGKKT 276 >gi|153952688|ref|YP_001393453.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium kluyveri DSM 555] gi|146345569|gb|EDK32105.1| Predicted D-alanyl-D-alanine carboxypeptidase precursor [Clostridium kluyveri DSM 555] Length = 310 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 17/208 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA V L K + + + E S + F+ G ++ + L + Sbjct: 83 PASLTKIMTAIVAIENLPNLKEEIRLTNSTFQRLYEADASMTGFQPGEKVSAIDLLYGAL 142 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S + + +A + +E+ FV+ MN + +LG+ THF N G+ HYTT ++A+ Sbjct: 143 LPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGMDNTHFENVTGIHNENHYTTVENLAV 202 Query: 173 -LSWRIKTD-----FPQYMHYFQIKGLEIKG--------KKYPNTNWAVGTFLGADGMKT 218 LS+ ++ D F H Q G ++ N N G LG KT Sbjct: 203 LLSYALQNDTFRDIFTSSRHSTQPTNKHPDGITFYSTMFEELDNQNIIDGEILGG---KT 259 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 G+T G + + A G Q I + GA Sbjct: 260 GYTDEVGLCLASLAKVGRQEYILISAGA 287 >gi|218513748|ref|ZP_03510588.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3] Length = 136 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++A + L +LD TG V+A D +PASLTK+MT Y+ F LK K Sbjct: 14 PLAALAGSASL----ILDARTGKVLAAENADTLNHPASLTKMMTLYLTFEALKRGKIDWD 69 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L +E F + Sbjct: 70 TPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGFARM 129 Query: 138 MNNTSKN 144 M ++ Sbjct: 130 MTAKARQ 136 >gi|56420821|ref|YP_148139.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] gi|56380663|dbj|BAD76571.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] Length = 382 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 29/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ AS+TK+MTA L + + +T+S A S Sbjct: 39 LIEQHSGRVLFAKDAYTKRRIASITKIMTA-----ILAIESGKMDDTVTVSARAVRTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G + L + + L+++S ND AVAIAE + + + FV MN + +G+ T F Sbjct: 94 SIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEF 153 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEI-KGKKYPNTNWA 206 N HG+ HY+TA DMA+L QY + +I G ++ + P + A Sbjct: 154 ANPHGLDDAENHYSTAYDMALLM--------QYAMKNKEFRRISGTKVYRAPAPPGEDGA 205 Query: 207 ----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A +G LIAV L A D Sbjct: 206 RVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPD 257 >gi|225378096|ref|ZP_03755317.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM 16841] gi|225210097|gb|EEG92451.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM 16841] Length = 328 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 25/232 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PAS TK++TAY+ K L +T+S+NA+ +S K G + L + L Sbjct: 104 PASTTKILTAYIAL-----KYGNLEDYVTVSENAANQASDSSVCGLKAGDVVQLKDLLYG 158 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +++KS ND A+AIAE + + + F MN + +G + +HF+N +G+ HYT+ D+ Sbjct: 159 MMLKSGNDAAIAIAEHIGGSVEGFADMMNQEALAMGATRSHFVNPNGLPDENHYTSVYDL 218 Query: 171 AILSWRIKTD---------FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGM---- 216 ++ D + Y + G ++ K + NTN + G +G+ Sbjct: 219 YLIFQNAVQDQTFLDIISTMSYDVVYTDVNGAGVE-KTWENTNQYLTGKEKAPEGITVVG 277 Query: 217 -KTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG T A+G+ +V + Q +++++L A ++ + +LS GF N Sbjct: 278 GKTGTTGAAGYCLVLYSYNASGQPIVSIVLKADGKSNLYLLMNEMLS-GFAN 328 >gi|219853360|ref|YP_002470482.1| hypothetical protein CKR_0017 [Clostridium kluyveri NBRC 12016] gi|219567084|dbj|BAH05068.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 316 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 17/208 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA V L K + + + E S + F+ G ++ + L + Sbjct: 89 PASLTKIMTAIVAIENLPNLKEEIRLTNSTFQRLYEADASMTGFQPGEKVSAIDLLYGAL 148 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S + + +A + +E+ FV+ MN + +LG+ THF N G+ HYTT ++A+ Sbjct: 149 LPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGMDNTHFENVTGIHNENHYTTVENLAV 208 Query: 173 -LSWRIKTD-----FPQYMHYFQIKGLEIKG--------KKYPNTNWAVGTFLGADGMKT 218 LS+ ++ D F H Q G ++ N N G LG KT Sbjct: 209 LLSYALQNDTFRDIFTSSRHSTQPTNKHPDGITFYSTMFEELDNQNIIDGEILGG---KT 265 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 G+T G + + A G Q I + GA Sbjct: 266 GYTDEVGLCLASLAKVGRQEYILISAGA 293 >gi|328954968|ref|YP_004372301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium glomerans PW2] gi|328455292|gb|AEB06486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium glomerans PW2] Length = 452 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/315 (26%), Positives = 129/315 (40%), Gaps = 55/315 (17%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-------------LPYYTLLDTNTGHVIA----- 43 R +VI A+ L P + AET L D GH I Sbjct: 19 RLLIVICAVLALIVCMPARAHAETRADDLVCGESIAQRGLKQRNRPDIQAGHAIVMGRDG 78 Query: 44 ----ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99 E D AS+TK+MTA V S K+ + I + + A+ +++ ++G Sbjct: 79 ICYFERDADAQVKIASITKVMTALVALSHGKKSET-----IAVDRAAATVGEASAHLREG 133 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESL--------CKTEKKFVQHMNNTSKNLGLSATH 151 ++L++AL+ L++ S ND A+AIA ++ + FV MN +K LG + T+ Sbjct: 134 DALSLEDALRCLLIPSGNDAALAIATAIGSEIDPTSSDPDGVFVNAMNEKAKQLGCTGTN 193 Query: 152 FMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F N HG+ ++TARD+AI+ D + I G + + A Sbjct: 194 FTNPHGLDMDPWAGDMHSTARDVAIMVAAAMRDDT----FRSIVGTGAARVTVRSADGAS 249 Query: 208 GTFLGAD-----------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 T +D G+KTG T +G+ + + + V+LGA R S Sbjct: 250 RTLELSDVNQMLNAQGNIGVKTGTTDEAGYCFAGAFSRDGNEVYTVVLGANTSQQRFDDS 309 Query: 257 ASLLSMGFYNKTDRK 271 ASL + +Y RK Sbjct: 310 ASLATW-YYAHAKRK 323 >gi|319767311|ref|YP_004132812.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC52] gi|317112177|gb|ADU94669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC52] Length = 460 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 23/208 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA L + + +T+S A S+ ++G + L + + L++ Sbjct: 138 ASITKIMTA-----ILAIESGKMDDTVTVSARAVRTEGSSIYLRQGEKIKLRDLVYGLML 192 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAI 172 +S ND AVAIAE + + + FV MN + +G+ T F N HG+ HY+TA DMA+ Sbjct: 193 RSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEFANPHGLDDAENHYSTAYDMAL 252 Query: 173 L-SWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----------VGTFLGADGMKTGF 220 L + +K + +I G ++ + P + A + G KTG+ Sbjct: 253 LMQYAMKNK-----EFRRISGTKVYRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGY 307 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 T + +V +A +G LIAV L A D Sbjct: 308 TKRAHRTLVTTASKGGIDLIAVTLDAPD 335 >gi|297529545|ref|YP_003670820.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. C56-T3] gi|297252797|gb|ADI26243.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. C56-T3] Length = 460 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 23/208 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA L + + +T+S A S+ ++G + L + + L++ Sbjct: 138 ASITKIMTA-----ILAIESGKMDDTVTVSARAVRTEGSSIYLRQGEKIKLRDLVYGLML 192 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAI 172 +S ND AVAIAE + + + FV MN + +G+ T F N HG+ HY+TA DMA+ Sbjct: 193 RSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEFANPHGLDDAENHYSTAYDMAM 252 Query: 173 L-SWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----------VGTFLGADGMKTGF 220 L + +K + +I G ++ + P + A + G KTG+ Sbjct: 253 LMQYAMKNK-----EFRRISGTKVYRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGY 307 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD 248 T + +V +A +G LIAV L A D Sbjct: 308 TKRAHRTLVTTASKGGVDLIAVTLDAPD 335 >gi|256372037|ref|YP_003109861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium ferrooxidans DSM 10331] gi|256008621|gb|ACU54188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium ferrooxidans DSM 10331] Length = 414 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 25/187 (13%) Query: 54 ASLTKLMTAYVV-----FSFLKEKKAMLTTP-------ITISKNASEYPPSNSTFKKGST 101 ASL KLMTA +V + TP + ++++ S P G Sbjct: 93 ASLAKLMTALIVVRRHPLGSTASGPTLTMTPADVILSDVDVAEDQSTVP-----ITAGER 147 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 + L+ L+V+SAN+IA +A + +E FV MN T++ +GL+ THF +A G Sbjct: 148 LNERQLLEALLVRSANNIATILATWVAGSESAFVATMNATARTMGLTGTHFADASG-FNK 206 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGAD--GMKT 218 +TARD+AI++ R++ D P + + G PN A+GT D G+K+ Sbjct: 207 ATVSTARDVAIVTARVE-DNPTLAAIASEHAVTLPGAGTLPNIIQAIGT---GDVVGVKS 262 Query: 219 GFTCASG 225 GFT SG Sbjct: 263 GFTIWSG 269 >gi|196248748|ref|ZP_03147448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|196211624|gb|EDY06383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 354 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 29/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G ++ AS+TK+MTA + K L +T+S A S Sbjct: 11 LIEQHSGRILFAKDAHTKRRIASITKIMTAILAIESGK-----LDDTVTVSARAVRTEGS 65 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G M L + + L+++S ND AVAIAE + + + FV MN + +G+ T F Sbjct: 66 SIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEF 125 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEI-KGKKYPNTNWA 206 N HG+ HY+TA DMA+L QY + +I G ++ + P + A Sbjct: 126 ANPHGLDDAENHYSTAYDMALLM--------QYAMKNKEFRRISGTKVYRAPAPPGEDGA 177 Query: 207 ----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A + L+AV L A D Sbjct: 178 RVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTLDASD 229 >gi|225871199|ref|YP_002747146.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] gi|225700603|emb|CAW95132.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] Length = 412 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEY 89 ++ ++G ++ E D + ASL+K++TAY+V+ ++ K + +TIS K + Y Sbjct: 35 VELDSGKILYEKDADKTVSVASLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYKLTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M K+ G++ Sbjct: 95 TISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKDWGITG 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H G + +A D+A+++ + +FP+ + E Sbjct: 154 AKVVNASGLPNHILGEHIYPGSSLDDDNQFSAADLALVTSHLLKEFPEVLKLSSQVQAEF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 ++ + N+ + G DG+ ++ G + +A++++ + +I V+L A Sbjct: 214 NHQQIFSYNYMLKGMPNYRDGVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNA 268 >gi|226324960|ref|ZP_03800478.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758] gi|225206308|gb|EEG88662.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758] Length = 292 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 117/263 (44%), Gaps = 32/263 (12%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP-WNPASLTKLMTAYVVFSF 68 + + N E N+L L D TG + +Y H PAS TK+MTA Sbjct: 20 LCVAQNDVALQGYTEDNELHSAALFDL-TGERVLYSYKAHERLYPASTTKIMTA-----L 73 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIA 124 L + A L +TIS NA S KG TL + L L++ S ND A AIA Sbjct: 74 LAIENANLDDQVTISGNADASSFSADAQVCGLAKGEVWTLRDLLGALLLYSGNDAATAIA 133 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-AILSWRIK-TDFP 182 E + +E+ FV MN ++ L + THFMN HG+ HYTTA D+ I + IK DF Sbjct: 134 EYVGGSEEAFVNMMNRRAQELMANGTHFMNPHGLHDDNHYTTAYDLYLIFNECIKHEDFV 193 Query: 183 QYM-------HYFQIKGLEIKGKKYPNTNWAVG--------TFLGADGMKTGFTCASGFN 227 + +Y + G + P +A G T +G KTG T +G+ Sbjct: 194 NIIQSEAYTAYYTDVDGNSQEVLFTPTNLYAQGEVDVPENVTIVGG---KTGTTDEAGYC 250 Query: 228 -IVASAIQGDQSLIAVILGALDR 249 I+ D I++++GA ++ Sbjct: 251 LILMEKDSSDNPYISIVMGASEK 273 >gi|261417877|ref|YP_003251559.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC61] gi|261374334|gb|ACX77077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC61] Length = 382 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 29/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G V+ AS+TK+MTA L + + +T+S A S Sbjct: 39 LIEQHSGRVLFAKDAYTKRRIASITKIMTA-----ILAIESGKMDDTVTVSARAVRTEGS 93 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G + L + + L+++S ND AVAIAE + + + FV MN + +G+ T F Sbjct: 94 SIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEF 153 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEI-KGKKYPNTNWA 206 N HG+ HY+TA DMA+L QY + +I G ++ + P + A Sbjct: 154 ANPHGLDDAENHYSTAYDMALLM--------QYAMKNKEFRRISGTKVYRAPAPPGEDGA 205 Query: 207 ----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + G KTG+T + +V +A +G LIAV L A D Sbjct: 206 RVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPD 257 >gi|238852512|ref|ZP_04642924.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri 202-4] gi|238834859|gb|EEQ27084.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri 202-4] Length = 308 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 21/252 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D G+VI + AS+TKL+TAY+ +KEKK T ++ ++ N P Sbjct: 56 IDAKNGNVIYAKNANQSLPIASMTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINLGSNP 115 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S G T+ ++KSAN+ A +A ++ E F+ M + L Sbjct: 116 DYASVPLNLGQKYTVKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHN 175 Query: 150 THFMNAHGVVQH-----GHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 F+ G+ + G TT A DMAI++ ++ TD+P+ ++ ++ + Sbjct: 176 VKFVTVDGLPEKKKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNT 235 Query: 199 KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N+N + DG+KTG T +G + + ++ +I VILGA + N R Sbjct: 236 LMTNSNKMLNGLSDYDPNYPVDGLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNER 295 Query: 253 NKVSASLLSMGF 264 + LL+ F Sbjct: 296 FSETKKLLNYSF 307 >gi|329666891|gb|AEB92839.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii DPC 6026] Length = 308 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 23/233 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TKL+T Y+ +KEKK T +T ++ S ++ + G T+ Sbjct: 76 ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYD 135 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHY 164 ++KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ + G Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195 Query: 165 TT------ARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYPNTNWAVGTFL 211 TT A DMAI++ ++ TD+P+ ++ YFQ + K ++ TF Sbjct: 196 TTVENKMSANDMAIVARKLTTDYPEILNTTKQARAYFQNTLMTNSNKMLSGLSYYDSTF- 254 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G + + + +I VILGA + N R + LLS F Sbjct: 255 PVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCF 307 >gi|195978796|ref|YP_002124040.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975501|gb|ACG63027.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 428 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 ++ ++G ++ E D + ASL+K++TAY+V+ ++ K + +TIS E Y Sbjct: 51 VELDSGKILYEKDADKTVSVASLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNY 110 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M K+ G++ Sbjct: 111 TISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKDWGITG 169 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H G + +A D+A+++ + +FP+ + E Sbjct: 170 AKVVNASGLPNHILGEHIYPGSSLDDDNQFSAADLALVTSHLLKEFPEVLKLSSQVQAEF 229 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 ++ + N+ + G DG+ ++ G + +A++++ + +I V+L A Sbjct: 230 NHQQIFSYNYMLKGMPNYRDGVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNA 284 >gi|331003847|ref|ZP_08327339.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412039|gb|EGG91436.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon 107 str. F0167] Length = 455 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 45/238 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + + NTG + E D + PAS+TK+MT +V ++A L + S+ A+ + Sbjct: 45 VYNANTGEFLYEKNGDRQFYPASITKIMTTLIVL-----EQANLNDTVVFSRAATTNLEA 99 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +T +G M++ +AL ++ SAN+++ +AE + + F MN ++ +G + Sbjct: 100 GATRLGVSEGDKMSVRDALYGTMLASANEVSNGLAEYVGGSIAGFSSMMNARAREIGATN 159 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWR--------------------IKTDF---PQYMH 186 T+F+N G+ H TTA+DMA ++ IKT P MH Sbjct: 160 TNFVNPSGLNNQNHVTTAKDMARIAAEAFRNPDFRVIAGTKVYNFPAIKTKAEVTPIKMH 219 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G + YP G G KTG+T ++G +V A + LI V+L Sbjct: 220 HRMVNGSD----NYP----------GVIGGKTGYTRSAGNTLVTCAERNGVRLIVVVL 263 >gi|160893432|ref|ZP_02074217.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50] gi|156864827|gb|EDO58258.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50] Length = 533 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 9/149 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-- 87 Y +LD NTG+++ + PAS+TKL+T + K LT +T+S +A Sbjct: 99 YAIVLDANTGNILYQKNAFDKQYPASITKLLTFLLAIENTK-----LTDTVTMSHDAVFG 153 Query: 88 -EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNL 145 + S+ +G +++++AL ++++SAN++A I E + + F + MN + L Sbjct: 154 IDRGSSHIGLDEGEQISMEDALYGMMLESANEVAWGIGEFVSGGSIEDFAKMMNERAVEL 213 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILS 174 G THF+NA+G+ HYTT DMA+++ Sbjct: 214 GCLGTHFVNANGLPDENHYTTCYDMALIT 242 >gi|297582349|ref|YP_003698129.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] gi|297140806|gb|ADH97563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] Length = 465 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 60/289 (20%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 L+D +G V+ E D P PAS+TK+M+ Y++ + + T + IS + Sbjct: 38 LVDAKSGRVLFERNIDQPLPPASMTKMMSEYLILEAVNDGDISWDTNVPISDFLASLSHN 97 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN + ++ + + + SAN +A+AE + +E FV MN LGL Sbjct: 98 RSLSNVPLRVDGEYNVEELYESVAIYSANASTMALAELISGSEGAFVSEMNEKGVELGLG 157 Query: 149 ------------------------ATHFMNAHGV--------------VQHGHYTTARDM 170 + F+N+ G+ + +Y +AR Sbjct: 158 TLMREAGGEYGLEDLGEISEEGLGSFQFVNSTGLPNRLLEGNHPEGTGAEEDNYMSARAA 217 Query: 171 AILSWRIKTDFPQYMHYFQIKGL------EIKGKKYPNTNW---AVGT------FLGADG 215 A L++ + D+P+ + + G+ E G NW GT + DG Sbjct: 218 ATLAYYLVNDYPEVL---DVAGIPHKVFREGTGDAIDMPNWNNMIPGTENSHLDYEYVDG 274 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +KTG T A+GF + + Q L++V++GA R + + +L GF Sbjct: 275 LKTGHTNAAGFTFTGTGEKDGQRLVSVVMGADSIEHRFQETQRVLEWGF 323 >gi|239980721|ref|ZP_04703245.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074] Length = 313 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 25/255 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G + D AS TK M VV L K L +T+ + +Y Sbjct: 49 LMDASSGKTVFSKSADTKRQMASTTKTMAVAVV---LDTKGVNLDKKVTVKQTYRDYVAK 105 Query: 93 NST----FKKGSTMTLDNALKLLIVKSANDIAVAIAES------LCKTEKKFVQHMNNTS 142 N + G +T+ L ++ S D A A+A++ + K F+ MN + Sbjct: 106 NGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISKMNAKA 165 Query: 143 KNLGLSATHFMNAHGVVQHGH-YTTARDMAILS--------WRIKTDFPQYMHYFQIKGL 193 K+LG++ T F + G+ + G+ Y+T RD+A L+ ++ KG Sbjct: 166 KSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKATAKGG 225 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + + NTN +G++ GA G KTG A+G ++ SA + +SL+ VI L+ + R Sbjct: 226 GTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVI---LNDSNRY 282 Query: 254 KVSASLLSMGFYNKT 268 + +L GF KT Sbjct: 283 ADAGKMLDYGFGKKT 297 >gi|317496761|ref|ZP_07955091.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895773|gb|EFV17925.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 383 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 14/223 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ E D AS TK++T + K L +SKNA+ P Sbjct: 35 IMDAESGKILYEKSKDQKMPNASTTKILTCLYIL-----KHCDLDQMAEVSKNAAMQPKV 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + + L L+++S ND AV +AE + +KF + MN ++NLG THF Sbjct: 90 RLGVREGEKYKVKDLLYGLMLESYNDCAVVLAEHAEGSVEKFEKRMNQMAENLGTLNTHF 149 Query: 153 MNAHGV----VQHGHYTTARDMA-ILSWRIKT----DFPQYMHYFQIKGLEIKGKKYPNT 203 + +G+ + H TTA+D+A I++ IK + Q Y G + N Sbjct: 150 VTPNGLDGIDKKGRHETTAQDLAKIMARCIKNQQFLEITQTKQYTFTDGSRKRRFICNNH 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + + G KTG+T +G+ V + Q + ++ +L + Sbjct: 210 NALLSSMQGVISGKTGYTSKAGYCYVGAVKQKNMTMTFSVLAS 252 >gi|163814077|ref|ZP_02205469.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759] gi|158450526|gb|EDP27521.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759] Length = 331 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 4/144 (2%) Query: 33 LLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EY 89 LLD T VIA N + PAS+TK+MT +V +++ + L +T+++ + ++ Sbjct: 82 LLDNTTREPVIAHNAHKKIY-PASMTKIMTGLLVIESIEKGEISLDDMVTLNRKVTFDDW 140 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S G + + N L L++ S ND V +AE + +E F MN ++ +G + Sbjct: 141 DAMASDLVGGCRINVKNLLYGLMITSYNDCGVILAELIAGSESAFCDMMNEKAQEIGATN 200 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 THF N HG+ HYTTA D+ ++ Sbjct: 201 THFENCHGLHSDDHYTTAYDLYLI 224 >gi|256846732|ref|ZP_05552188.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_36A2] gi|256717952|gb|EEU31509.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_36A2] Length = 425 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISKN +Y S K Sbjct: 180 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYGGSGIALKA 239 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + K FV MN K LGL + + Sbjct: 240 GQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQNEIRYHTPA 299 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK-KYPNTNWA 206 G+ Q TAR + +++ + +Y Y +I G++ GK N N Sbjct: 300 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKSTKIHNGKISIRNRNHL 355 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS Q D +I V++G TR+K+ S+L + Sbjct: 356 IGEN-GVYGIKTGFHKEAKYNIAVASKFQ-DTDVIIVVMGGETYKTRDKIVLSVLDI 410 >gi|270289644|ref|ZP_06195946.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum Weiss] Length = 398 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISKN 85 + ++G ++ E D PAS+TK+ TA ++ F+ ++ LT+ +K Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60 Query: 86 ASEY--PPS-------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 S Y PP K ++ + L++ SAND A +A++ C++ F+ Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +N+ K +G THF + HG+ HYTTARD+AI+ + P + + ++ Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASYTME 179 Query: 197 G------KKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + +TN + + + G KTG T ++G NIV +A + ++S+I V G Sbjct: 180 STNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAG 239 >gi|138895855|ref|YP_001126308.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|134267368|gb|ABO67563.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] Length = 446 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 124/274 (45%), Gaps = 37/274 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ ++G ++ AS+TK+MTA L + L +T+S A S Sbjct: 103 LIEQHSGRILFAKDAHTKRRIASITKIMTA-----ILAIESGKLDDTVTVSARAVRTEGS 157 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + ++G M L + + L+++S ND AVAIAE + + + FV MN + +G+ T F Sbjct: 158 SIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEF 217 Query: 153 MNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEI-KGKKYPNTNWA 206 N HG+ HY+TA DMA+L QY + +I G ++ + P + A Sbjct: 218 ANPHGLDDAESHYSTAYDMALLM--------QYAMKNKEFRRISGTKVYRAPAPPGEDGA 269 Query: 207 ----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + G KTG+T + +V +A + L+AV L A D + + + Sbjct: 270 RVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTLDASD-DWNDHI- 327 Query: 257 ASLLSMGFYN----KTDRKKINYIIKD-FYQQNL 285 ++ GF N K K+I I D FY+ L Sbjct: 328 -AMYEYGFSNYRIAKVSGKRIVKRISDPFYKGRL 360 >gi|89894320|ref|YP_517807.1| hypothetical protein DSY1574 [Desulfitobacterium hafniense Y51] gi|89333768|dbj|BAE83363.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 352 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 19/256 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +L+ TG + E D PAS KL+T +V L+ + IT+ + + Sbjct: 92 YLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADEL-----ITLGEEV-KVE 145 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S FK G + + + + V SAND A A+A + T++KF+Q MN+ + LG + Sbjct: 146 GSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEKFIQAMNSYAAELGCQDS 205 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---------KKYP 201 F A G+ YTTA+D+AI++ ++ T+ P M Y K ++ ++ Sbjct: 206 QFKTADGMPAEDQYTTAKDLAIIAAKV-TETPVLMDYINQKKASVEWTDANGWKQVREIS 264 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN +G + G G+KTG T +G +V D L+ V+LG+ R T + LL Sbjct: 265 NTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITNEDGDLLLVLLGSKQRYTD---TVELLD 321 Query: 262 MGFYNKTDRKKINYII 277 G R + I+ Sbjct: 322 QGMAKIRTRSALKNIL 337 >gi|15835453|ref|NP_297212.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum Nigg] gi|7190867|gb|AAF39639.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum Nigg] Length = 438 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 29/241 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISK 84 ++ ++G ++ E D PAS+TK+ TA ++ F+ ++ LT+ +K Sbjct: 40 VMHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAK 99 Query: 85 NASEY--PPS-------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S Y PP K ++ + L++ SAND A +A++ C++ F+ Sbjct: 100 QQSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFM 159 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N+ K +G THF + HG+ HYTTARD+AI+ + P + + + Sbjct: 160 HQLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASYTM 218 Query: 196 KG------KKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + +TN + + + G KTG T ++G NIV +A + ++S+I V Sbjct: 219 ESTNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAA 278 Query: 245 G 245 G Sbjct: 279 G 279 >gi|145595002|ref|YP_001159299.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica CNB-440] gi|145304339|gb|ABP54921.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica CNB-440] Length = 428 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 17/251 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+ P PAS+ KL+ + L ++ +T++K + Sbjct: 100 WLVADLDTGQVLGSCGPHEYATPASVQKLLLTAALLPDLDPQQV-----VTVTKEDLDIE 154 Query: 91 PSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLG 146 P +S G ++ L+++S ND A +A + V+ MN +++LG Sbjct: 155 PDSSAVGLLVGGQYPVETLWLGLLMQSGNDAANVLARLGGGAEGRAGGVRAMNEFAEHLG 214 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYM--HYFQIKGLEIKGKK--- 199 TH + G+ G +T+A D+A+++ + DF +Y QI E G+K Sbjct: 215 ARQTHAVTPSGLDGPGQFTSAYDLALIARACFAEPDFQRYALTETHQIPDQEALGRKGFQ 274 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSAS 258 N N + + GA G KTGFT + V +A + + L+ +LGA R R + A+ Sbjct: 275 IQNGNSLIDRYPGALGGKTGFTTLARHTYVGAAERDGRRLVVTLLGAESRPLRGWEQGAA 334 Query: 259 LLSMGFYNKTD 269 LL GF D Sbjct: 335 LLDWGFALSRD 345 >gi|126650121|ref|ZP_01722354.1| DacB [Bacillus sp. B14905] gi|126593293|gb|EAZ87255.1| DacB [Bacillus sp. B14905] Length = 348 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++I+ M I P S A Y +LD +TG V+ + + ASLTK+ TA Sbjct: 2 LMIIVLMV----ILPQTSFARGG--SGYAVLDGDTGRVLIGSNSNERLPIASLTKIWTAL 55 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V + + L + IS A+ S+ + G T+T++ L L+++S ND A A+ Sbjct: 56 VAI-----ENSDLQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATAL 110 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 AE + + + FV+ MN + GL+ T FMN G+ H ++ARD A Sbjct: 111 AEHVGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEDHLSSARDTA 158 >gi|257876629|ref|ZP_05656282.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC20] gi|257810795|gb|EEV39615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC20] Length = 444 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +TG V+ + + AS+TK+++ Y+V +++ P+ IS N S P Sbjct: 53 IDFDTGKVLYDQDGETAMGIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSP 112 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + T T+ + ++SAN VA+AE + +E FV M ++ G++ Sbjct: 113 NLSNVPLHQDVTYTVKDLYDASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITD 172 Query: 150 THFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + G +T A+D+A+++ + DFP + + + Sbjct: 173 AKIVNASGLNNAYLGENIYPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQF 232 Query: 196 KGKKYP-----NTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 Y N NW + F G DG+KTG T +G V +A++ Q +I V+L Sbjct: 233 GEGSYSPVEMVNWNWMLPGFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 290 >gi|270285635|ref|ZP_06195029.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum Nigg] Length = 414 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISKN 85 + ++G ++ E D PAS+TK+ TA ++ F+ ++ LT+ +K Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60 Query: 86 ASEY--PPS-------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 S Y PP K ++ + L++ SAND A +A++ C++ F+ Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +N+ K +G THF + HG+ HYTTARD+AI+ + P + + ++ Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASYTME 179 Query: 197 G------KKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + +TN + + + G KTG T ++G NIV +A + ++S+I V G Sbjct: 180 STNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAG 239 >gi|312978130|ref|ZP_07789875.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus CTV-05] gi|310895105|gb|EFQ44174.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus CTV-05] Length = 433 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK------EKKAMLTTPITISKNAS 87 +D+++G ++ AS+TKL+T Y+ +K ++K T PI N + Sbjct: 55 IDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKVANNA 114 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 EY SN K G + T+ + +++SAN A+ + +++ ++K F+ M K G+ Sbjct: 115 EY--SNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKWGI 172 Query: 148 ------SATHFMNAH-------GVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGL 193 +A N + GV ++ T +A+DMAI+ ++ + FP+ + ++ L Sbjct: 173 EDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLAHL 232 Query: 194 EIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 K K N NW + DG+KTG T A+G + + L+ V+ Sbjct: 233 NFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLTVV 292 Query: 244 LGALDRN 250 +GA R+ Sbjct: 293 MGARHRD 299 >gi|313897406|ref|ZP_07830949.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] gi|312957776|gb|EFR39401.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] Length = 327 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 29/227 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +L ++ E D + AS++K+MTA + + L + ++ Sbjct: 23 YVVLSGADNTIVEEKNKDEKQSVASISKIMTAVIAI-----EHGQLDESFAVDDEINKAY 77 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ K+G +T+ + L L+++S ND AV IA+ + +++ FV+ MN+ + +G+S T Sbjct: 78 GSSVYLKQGQQVTMRDLLYGLMLRSGNDAAVEIAKHVAGSQEAFVELMNHKAAEIGMSNT 137 Query: 151 HFMNAHGVVQH--GHYTTARDMAIL-SWRIKT-DFPQYMHYFQIKGLEIKGKKYPNTNWA 206 F N G+ + G+ +TA DMA+L S+ +K +F I G KY T+W Sbjct: 138 TFSNPSGLDEEDGGNISTANDMAVLMSYAMKNKEFRT-----------ITGSKYYTTDWN 186 Query: 207 VG---------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G KTGFT +G +V++A I V L Sbjct: 187 MRWKNKNRLLFDYPFTVGGKTGFTKKAGRTLVSAAEHDGVESIVVTL 233 >gi|284043333|ref|YP_003393673.1| serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM 14684] gi|283947554|gb|ADB50298.1| Serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM 14684] Length = 434 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 10/211 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA V L + + ++ ++G M++ + L+ L++ Sbjct: 85 ASTTKIMTALVAVEKLPLGRVCTAPAYAATPAETQI-----GLRQGERMSVRDLLRALML 139 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND A +A + F+ MN ++ L L+ THF G+ +Y+TA D+A L Sbjct: 140 PSANDAAATLAVCAAGSRGAFIDLMNAKARELRLADTHFATPVGLDSPANYSTAADLARL 199 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT----NWAVGTFLGADGMKTGFTCASGFNIV 229 ++ P ++ ++ +P T N V + DG+KTG T A+G+ +V Sbjct: 200 GIALRQK-PFLARTVDLRSAVLRTGAFPRTVVNRNGLVQSVPWVDGVKTGHTNAAGYLLV 258 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 AS+ + S +A ++G + R+ + +LL Sbjct: 259 ASSTRDGLSFVAAVMGTPSESARDADALALL 289 >gi|23007783|ref|ZP_00049502.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 137 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 5/110 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + L+D +G V+ E D P++PAS+ KLMTA +VF +KE + L + T++++A Sbjct: 26 HAILIDAESGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSLDSEFTVTEDAWRR 85 Query: 87 -SEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +S F + S + L + L+ LIV+S ND A+ IAE++ TE+ F Sbjct: 86 GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEEAF 135 >gi|225017092|ref|ZP_03706284.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum DSM 5476] gi|224950149|gb|EEG31358.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum DSM 5476] Length = 445 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 29/275 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 FL++ + ++S P + A E N Y L++ TG VI E + PAS T Sbjct: 6 FLLLPCIVLVSLFAPLTAQAAYTPDFEINSEAAY-LVNMETGKVIYEKNAQTQYLPASTT 64 Query: 58 KLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 K+MTA + + + M+T P + SN+ + +++ + L L+++SA Sbjct: 65 KIMTAIIALETIDDIDNTMVTAPAYVFDQLYGLSASNADLRVDEQLSMKDLLYALMLRSA 124 Query: 117 NDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM----- 170 + A IA+ + + + +KFV MN ++ +G + THF+NAHG+ + TTA DM Sbjct: 125 CEGASIIADYIGEGDIQKFVDMMNAKAEEIGCTNTHFVNAHGLDEPDQLTTAYDMYLITN 184 Query: 171 -AILSWRIKTDFPQ------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGA-------DGM 216 A+ + +I F + Y K E + + N + T L G+ Sbjct: 185 YALTNEQIGARFREIATTYSYTMAATNKHPEPRVISHTNKMMSSNTDLNGGYSRSYVQGI 244 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 KTG T FN+V A Q + + V LGA +N+ Sbjct: 245 KTG-TSNEYFNLVTMAKQDGYTYLLVTLGAHGQNS 278 >gi|301337031|ref|ZP_07225233.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia muridarum MopnTet14] Length = 398 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 29/240 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISKN 85 + ++G ++ E D PAS+TK+ TA ++ F+ ++ LT+ +K Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60 Query: 86 ASEY-PPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQ 136 S Y P + G + L + ++ L++ SAND A +A++ C++ F+ Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +N+ K +G THF + HG+ HYTTARD+AI+ + P + + ++ Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASYTME 179 Query: 197 G------KKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + +TN + + + G KTG T ++G NIV +A + ++S+I V G Sbjct: 180 STNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAG 239 >gi|255505331|ref|ZP_05345475.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255268368|gb|EET61573.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 326 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKL 110 PASLTK+MTA V K L IT+ + A + P +S + G TL + Sbjct: 101 PASLTKIMTALVAL-----KYGNLDDVITVDEVALDIDPESSVCYLELGDQYTLRQLIYG 155 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ S ND AIA + + + FV MN + ++G + THFMNAHG+ HYTT D+ Sbjct: 156 LLIASGNDAGNAIAYHVGGSIENFVAMMNQEAASIGATNTHFMNAHGLQDENHYTTPYDI 215 Query: 171 AIL 173 ++ Sbjct: 216 YLM 218 >gi|310779537|ref|YP_003967870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter polytropus DSM 2926] gi|309748860|gb|ADO83522.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter polytropus DSM 2926] Length = 368 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 22/265 (8%) Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 HP AS+TK+MT VV+ ++ K L + IS A S +GS +T+ + L Sbjct: 45 HPL--ASVTKMMTVMVVYDHIRNKDISLEDRVEISPEARSVGGSMIWIAQGSKLTVRDLL 102 Query: 109 KLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLS-ATHFMNAHGV-VQHGHYT 165 K + SAN+ A A+AE + K + FVQ MN +++LGL F G+ Sbjct: 103 KATAIYSANNAAYALAEYIGKGDVDFFVQLMNQKAEDLGLGDEVEFYTPMGLPPSMTGKP 162 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGF 220 R A+ +++ + +Y Y I L + ++ N N + G G+KTG Sbjct: 163 MDRGTALGIYKLSLEALKYPEYITIASLKEDFIQDGTQRIVNRNKLLSKENGVFGIKTGH 222 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 +G+NI +A + + + I ++ G+ R+K A L FY++ +K+ Sbjct: 223 HSKAGYNISIAAKRDEVTTITIVFGSPKEEIRDKTVADSLDK-FYDEYHLEKL------- 274 Query: 281 YQQNLSNEVPNISEEVCTTQKEIIN 305 + P I EV +K+++ Sbjct: 275 ----IDTSKPMIEIEVVHGKKDVVQ 295 >gi|257470787|ref|ZP_05634877.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC 49185] gi|317064992|ref|ZP_07929477.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC 49185] gi|313690668|gb|EFS27503.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC 49185] Length = 376 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 17/264 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAET---NKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++++A+ ++S+ F +ET + P Y LL + G + D + ASLTK+ Sbjct: 7 VLLLAIVLISSTV-FAKDSETLMKEETPSYKAILLGDDKGKIYYSENIDEKYPLASLTKM 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT V F L++ + I +SK +++ S K+G TL++ +K + SAN+ Sbjct: 66 MTLMVTFDQLEKGNIKMKDKIKVSKKSAQTGGSRIFMKEGDVFTLEDLIKATAIYSANNA 125 Query: 120 AVAIAESLCKTE-KKFVQHMNNTSKNLGLSAT-HFMNAHGV----VQHG-HYTTARDMAI 172 A AIAE + K + KFV+ MN S +LGL F G+ + G T R + Sbjct: 126 AYAIAEYIGKGDVDKFVKMMNKKSADLGLEKELEFYTPAGLPSDMTKKGMDAGTTRGIYK 185 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGK-KYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 LS + +YM IK I GK K N N +G G G+KTG G+NI Sbjct: 186 LSLAA-AKYNKYMEIASIKETTIHNGKLKIKNRNLLLGE-EGIYGIKTGHHSKVGYNISV 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNK 254 + + + + V++G R++ Sbjct: 244 LSDKDNMKIFTVVVGGPTYQKRDE 267 >gi|223985343|ref|ZP_03635415.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM 12042] gi|223962698|gb|EEF67138.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM 12042] Length = 498 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 1/159 (0%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V+ + + PAS+TK+MT V + +T + +E S Sbjct: 95 MVDMDTGQVMIDKGSEDQIYPASMTKMMTLLVAIENAPALDSTMTLGPEVFAGLAEAHAS 154 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + FK+G T+++ + L L + S D A A+A +E FV MN + LG++ THF Sbjct: 155 VAGFKQGETVSVKDLLYGLFLPSGADAAQALALEEAGSETAFVGLMNEKAAELGMTGTHF 214 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +N G+ HYTT RD+ L R + P + FQ + Sbjct: 215 VNTSGLHDPDHYTTLRDLETL-MRYALENPTFNEIFQTR 252 >gi|238917380|ref|YP_002930897.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Eubacterium eligens ATCC 27750] gi|238872740|gb|ACR72450.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Eubacterium eligens ATCC 27750] Length = 370 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 16/240 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 +I M S+ F S ++ + PY LLD + +IA D PAS+TK+MT VV Sbjct: 89 LIYAQMASDYFDLTSESKVSS-PYAALLDVDNHKIIAGKQADTRMYPASMTKVMTLIVVT 147 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + + T + S + F G T+ +++ L LI+ S D A A+A Sbjct: 148 DNIDKIPQTYTFGFEMLNRLFREEASVAGFLDGETVDVEDLLYGLILPSGADAAEALAIM 207 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDF-PQY 184 + + ++F + MN LGL T F N G+ YTT +MA I+ + ++ + + Sbjct: 208 VAGSNEEFAKLMNAKCNELGLKHTRFANPTGLYDEEQYTTPAEMAMIMEYAMRDELRAKV 267 Query: 185 MHYFQIK---------GLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + +Q K G+++ Y N A G + G KTGF +G +V+ A+ Sbjct: 268 LGTYQYKTKATAQHPDGIQLTSTMYSRIYGNEAPGVIV--KGGKTGFISQAGSCLVSYAV 325 >gi|225572263|ref|ZP_03781127.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM 10507] gi|225040268|gb|EEG50514.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM 10507] Length = 357 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 16/223 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D + G V+ E AS TK++T + +T+S A+ P Sbjct: 1 MDGSNGRVLYEKDGKTVRANASTTKVLTCILALELGDGDDV-----VTVSAKAAAQPDVQ 55 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 +G T L++ L L++KS ND AVAIAE L + + F + MN+ +K +G + THF+ Sbjct: 56 LNIVEGETYYLEDLLYSLMLKSHNDSAVAIAEHLGGSVEGFAKMMNDKAKEIGCTDTHFV 115 Query: 154 NAHGV----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKK---YPNT 203 +G+ H TTA D+A++ R P ++ Q + +I GK+ N Sbjct: 116 TPNGLDASDTGGKHGTTATDLALIM-RYAISNPAFLTIAQTREYSFSDISGKRQFVVTNA 174 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + G KTGFT +G+ V + + ++ I +L Sbjct: 175 NAFLDMMDGVIAGKTGFTADAGYCYVCAWQRDGRTFIVALLAC 217 >gi|294784444|ref|ZP_06749735.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27] gi|294488016|gb|EFG35371.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27] Length = 425 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISKN +Y S K Sbjct: 180 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYGGSGIALKV 239 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + K FV MN K LGL + + Sbjct: 240 GQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQNEIRYHTPA 299 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK-KYPNTNWA 206 G+ Q TAR + +++ + +Y Y +I G++ GK N N Sbjct: 300 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKSTKIHNGKISIRNRNHL 355 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS Q D +I V++G TR+K+ S+L + Sbjct: 356 IGEN-GVYGIKTGFHKEAKYNIAVASKFQ-DTDVIIVVMGGETYKTRDKIVLSVLDI 410 >gi|86739377|ref|YP_479777.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3] gi|86566239|gb|ABD10048.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3] Length = 551 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G ++A P PAS K++TA V L + +T+ +NA Sbjct: 106 WLVADAGSGAILAAYRPHAQDLPASTMKILTALTVLPGLPPDRV-----VTVDENAPRVD 160 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ + +++ S ND +A+ ++ T +Q MN +++LG + T Sbjct: 161 GTKVGLVPGVGYTVRDLATAMLISSGNDATMALVQASGGT-PAVLQRMNALARSLGATDT 219 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNW 205 + G+ G T+ D+A+L R D P Y I + G+ + N N Sbjct: 220 VAGDPTGLDSPGQVTSVHDLAVLG-RAALDNPTVRGYLTIPRASLAGRGSTRFEIQNHNA 278 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + ++ G G+K G+T A+G V +A +G +LI +L K + +LL GF Sbjct: 279 LLRSYEGTIGVKNGYTIAAGATFVGAATRGGHTLIVALL--RTAPAYGKDARALLDWGFA 336 Query: 266 NKTDRKKINYIIKDFY-----------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 + + Y+ + ++S P ++ T + + A Sbjct: 337 HADTVTPVGYLANPGATAAASSGPAGDRPSISPAGPGVAPTAGTATSSSSSSRHGVARAG 396 Query: 315 DKESHFIDFEKIT 327 D S D IT Sbjct: 397 DPGS---DIGPIT 406 >gi|237740954|ref|ZP_04571435.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13] gi|229430998|gb|EEO41210.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13] Length = 414 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISKN +Y S K Sbjct: 169 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYGGSGIALKV 228 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + K FV MN K LGL + + Sbjct: 229 GQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQNEIRYHTPA 288 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK-KYPNTNWA 206 G+ Q TAR + +++ + +Y Y +I G++ GK N N Sbjct: 289 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKSTKIHNGKISIRNRNHL 344 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS Q D +I V++G TR+K+ S+L + Sbjct: 345 IGEN-GVYGIKTGFHKEAKYNIAVASKFQ-DTDVIIVVMGGETYKTRDKIVLSVLDI 399 >gi|315635519|ref|ZP_07890785.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22] gi|315480277|gb|EFU70944.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22] Length = 273 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 25/228 (10%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +I + +PASLTK+MTA + K + + +TI+ + + P+ Sbjct: 44 DLTKKQLIFSKDANQQVSPASLTKIMTAILAIESNK-----MDSVVTITADMKKVEPTIL 98 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFM 153 FK G + L + + +++SAND A +IA L +K KFV MN +K LG++ T F Sbjct: 99 GFKVGEKIYLRDLVNAALIRSANDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQ 158 Query: 154 NAHGVVQHGHYTTARDMAILS-WRIK-TDFPQYMH--YFQIKGLEIK--------GKKYP 201 N G H +TA D+ L+ + IK + F + + + K + K K P Sbjct: 159 NPCGFDAKNHKSTASDLLKLTEYAIKNSTFNEIVRKNSYSFKAINTKRTYTVYTSNKLQP 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + G+KTG+T +G ++A A +G + ++ V+L + +R Sbjct: 219 KEKYMI-------GVKTGYTNQAGPCLIARAKEGKKDILLVMLNSHNR 259 >gi|260437075|ref|ZP_05790891.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292810384|gb|EFF69589.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 396 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 137/309 (44%), Gaps = 45/309 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ + AS TK+MT V + + +T S A++ P Sbjct: 34 LIDADSGRILYGKNENDVMPMASTTKIMTLLVALKY-----GNPSDRVTFSSYAAKEPDV 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-----------TE------KKFV 135 KG TL+ L L++++S ND+A+ +AE + TE K+F+ Sbjct: 89 QLNALKGEQYTLNELLYLMMLRSYNDVAMMVAEYVGGVLNGDTSPNNTTEESKEDVKRFI 148 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWR-------IKTDFPQY 184 MN + LGLS T+F+ +G+ H TTA ++A+++ IK + Sbjct: 149 DEMNGYAVKLGLSDTYFVTPNGLDGEDEGRIHSTTAYELALIAREALKSEEVIKICTTKS 208 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 Y + G + N N + A GMKTGFT +G+ V + D++ I+V+L Sbjct: 209 FSYREQNGK--RSGTVTNGNRFLDINKNAIGMKTGFTGKAGYCFVGATKVDDRTFISVVL 266 Query: 245 GA---LDRNTRNKVSASLLSMG----FYNKTDRKKINY---IIKDFYQQNLSNEVPNISE 294 G ++N + + L+S G FY K +Y +++ Q+++ +P Sbjct: 267 GCGWPPNKNYKWADTGKLMSYGRDNYFYRNIFEKTYDYKEIKVENGLQESVGTYIPFEVN 326 Query: 295 EVCTTQKEI 303 + + + E+ Sbjct: 327 RLLSDEDEV 335 >gi|77405145|ref|ZP_00782244.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae H36B] gi|77176288|gb|EAO79058.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae H36B] Length = 414 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 35/278 (12%) Query: 6 VIIAMAMLSNIF--PFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +I ++ +LS IF P +S N + L +D ++G ++ E + P ASLTK+MT Sbjct: 7 IITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMTV 66 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKGSTMTLDNALKLLIVK 114 Y+V+ + T + I +YP SN +K T+ + ++ Sbjct: 67 YMVYKEIDNGNLKWNTKVNIX----DYPYQLTRESDASNVPLEK-RRYTVKQLVDAAMIS 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYT------- 165 SAN A+A+AE + TE KFV M + G+ +H +NA G+ G++ Sbjct: 122 SANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQN 181 Query: 166 -----TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 +ARD+AI+++ + ++P + + + N+ + G G+ Sbjct: 182 DENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGL 241 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 242 KTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 278 >gi|329116466|ref|ZP_08245183.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] gi|326906871|gb|EGE53785.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] Length = 412 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 45/315 (14%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 D +G V+ E AS TK++T Y+V+ +++ K ++P+TIS +YP Sbjct: 35 FDIESGKVLYEKNAKKILPVASATKVLTTYMVYKEIEQGKLEWSSPVTIS----DYPFQL 90 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +T S + LD +K ++V +AN A+A+AE + TE FV M + G Sbjct: 91 TTNYTISNVPLDARKYTVKQLMKAMLVTNANSAAIALAEKIGGTEPIFVDKMKKQLEVWG 150 Query: 147 LSATHFMNAHG----VVQHGHYT----------TARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ NA G ++ Y +A+D+AI++ + T++P+ + Y + Sbjct: 151 INDAKLYNATGLPNSILGDNIYPKSKQSAENKLSAKDLAIITHHLLTEYPEVLKYTSLPK 210 Query: 193 LEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G+ + N+ + + +G +G+ G SG +AS+ +I++++GA Sbjct: 211 ATFDGQDIYSYNYMLEGYPYERVGINGLFLGSPEKSGPTFIASSKINKMKVISIVIGAHQ 270 Query: 249 RN---TRNKVSASLLSMGFYNKTDR----------KKINYIIKDFYQQNLS---NEVPNI 292 + T + SLL Y +R K ++ IKD Q++S E I Sbjct: 271 EDNDVTEPFKTTSLLLDYLYQNFERVTLLKKNQVIKDKSFAIKDSPDQSVSISPKEDMTI 330 Query: 293 SEEVCTTQKEIINYN 307 +++ TT + I YN Sbjct: 331 IKKIGTTHQNEIIYN 345 >gi|283797579|ref|ZP_06346732.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291074687|gb|EFE12051.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 569 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 33/254 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 ++D ++G V+ ++PAS+TK++T+ +V + L +T SKNA E Sbjct: 42 VMDADSGTVLYGKNIHDTYSPASITKVLTSIIVL-----ENCDLDEMVTFSKNAIYNVEA 96 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ + G T+ + L L++KSAN+ A A+AE + T + F + MN +K LG Sbjct: 97 DSSSAGYDTGDQATVRDCLYALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILS-WRIKTD-FPQYMH--YFQI-------KGLEIKG- 197 +HF N G+ HY +A DMA+++ + + + F + + Y+++ +GL + Sbjct: 157 SHFANPSGLNDENHYVSAYDMALITRYAFENEIFEEIISTTYYELPPNARNPEGLGVSPG 216 Query: 198 -----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K +P V G KTG+T + +V A Q D +LI V+L + R T Sbjct: 217 NKLIKKNFPEYRPDV------IGGKTGYTSIALNTLVTGARQDDTTLITVVLHS--RGTT 268 Query: 253 NKVSASLLSMGFYN 266 ++ +L GF N Sbjct: 269 YSDTSRMLDFGFGN 282 >gi|313113074|ref|ZP_07798708.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624612|gb|EFQ07933.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] Length = 427 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + +ET + L + +TG I D ASLTKLMTA ++ K+ +T Sbjct: 34 PIQTASETEAV---YLFNADTGKTILNQNADQQQYVASLTKLMTALLLLESGKDLNGEVT 90 Query: 78 TPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 P +++ + +N T + G T+ + L +++ SAND A IA + + F Sbjct: 91 VPTALTQEFRDIQNANGTTMGLRIGETVRRIDLLNAMLIVSANDAASVIAYDVGGSVLDF 150 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 V+ MN ++ LG + T+F AHG+ +G+ +TA+D+ Sbjct: 151 VKQMNVRAQELGCTGTNFTCAHGLFDYGNVSTAQDL 186 >gi|295089928|emb|CBK76035.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 569 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 33/254 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D ++G V+ ++PAS+TK++T+ +V + L +T SKNA E Sbjct: 42 VMDADSGTVLYGKNIHDTYSPASITKVLTSIIVL-----ENCDLDEMVTFSKNAVYNVEA 96 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ + G T+ + L L++KSAN+ A A+AE + T + F + MN +K LG Sbjct: 97 DSSSAGYDTGDQATVRDCLYALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILS-WRIKTD-FPQYMH--YFQI-------KGLEIKG- 197 +HF N G+ HY +A DMA+++ + + + F + + Y+++ +GL + Sbjct: 157 SHFANPSGLNDENHYVSAYDMALITRYAFENEIFEEIISTTYYELPPNARNPEGLGVSPG 216 Query: 198 -----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K +P V G KTG+T + +V A Q D +LI V+L + R T Sbjct: 217 NKLIKKNFPEYRPDV------IGGKTGYTSIALNTLVTGARQDDTTLITVVLHS--RGTT 268 Query: 253 NKVSASLLSMGFYN 266 ++ +L GF N Sbjct: 269 YSDTSRMLDFGFGN 282 >gi|295115036|emb|CBL35883.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SM4/1] Length = 569 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 33/254 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EY 89 ++D ++G V+ ++PAS+TK++T+ +V + L +T SKNA E Sbjct: 42 VMDADSGTVLYGKNIHDTYSPASITKVLTSIIVL-----ENCDLDEMVTFSKNAVYNVEA 96 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S++ + G T+ + L L++KSAN+ A A+AE + T + F + MN +K LG Sbjct: 97 DSSSAGYDTGDQATVRDCLYALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVD 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILS-WRIKTD-FPQYMH--YFQI-------KGLEIKG- 197 +HF N G+ HY +A DMA+++ + + + F + + Y+++ +GL + Sbjct: 157 SHFANPSGLNDENHYVSAYDMALITRYAFENEIFEEIISTTYYELPPNARNPEGLGVSPG 216 Query: 198 -----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K +P V G KTG+T + +V A Q D +LI V+L + R T Sbjct: 217 NKLIKKNFPEYRPDV------IGGKTGYTSIALNTLVTGARQDDTTLITVVLHS--RGTT 268 Query: 253 NKVSASLLSMGFYN 266 ++ +L GF N Sbjct: 269 YSDTSRMLDFGFGN 282 >gi|295094878|emb|CBK83969.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1] Length = 172 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 60/108 (55%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG V+ E D PAS+TK+MT + F ++ + L +T+S++A+ Sbjct: 62 PSCILVEASTGQVLFEKNCDEAMAPASVTKVMTLLLAFEAIEAGQMTLDDIVTVSEHAAS 121 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 S F+ G T+++ +K +I+ S ND AVA+AE C+ + + Sbjct: 122 MGGSQCFFEAGEEQTVEDMIKCIIIASGNDAAVAMAEKGCRKRRSVCE 169 >gi|194336246|ref|YP_002018040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon phaeoclathratiforme BU-1] gi|194308723|gb|ACF43423.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon phaeoclathratiforme BU-1] Length = 390 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 13/203 (6%) Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 +PASLTK++T + + L + I+K ++ PS + FK G + L + +K Sbjct: 89 SPASLTKILTCIMAI-----ESGRLEEDVLITKESTLVEPSKAGFKPGEKIRLIDLVKAA 143 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG---VVQHGHYTTAR 168 +V S+ND A AIA L + FV MN ++ +G+ + F N G + G+ +TA Sbjct: 144 MVNSSNDAAFAIAIHLSGDVESFVAAMNYRAQRIGMRNSRFTNPAGFDKALYAGNSSTAE 203 Query: 169 DMAILS-WRIKTD-FPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCA 223 D+ L+ + +K F Q Q+ E +K N + + A G+KTG+T Sbjct: 204 DLLHLTEYAVKNPVFNQIARLEQVVFTEQTTRKVYSLKTHNKLLDKYPYAVGIKTGYTST 263 Query: 224 SGFNIVASAIQGDQSLIAVILGA 246 +G ++A AI+ ++ ++ V+L A Sbjct: 264 AGRCLIARAIKDNRDILLVMLNA 286 >gi|253582538|ref|ZP_04859760.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC 27725] gi|251835683|gb|EES64222.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC 27725] Length = 378 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LL + G + D + ASLTK+MT V F L++ + I +SK +++ S Sbjct: 41 LLGDDKGKIYYSENIDEKYPLASLTKMMTLMVTFDQLEKGSIKMKDKIKVSKKSAQTGGS 100 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSAT- 150 K+G TL++ +K + SAN+ A AIAE + K + KFV+ MN S +LGL Sbjct: 101 RIPMKEGEVFTLEDLIKATAIYSANNAAYAIAEYIGKGDVDKFVKMMNKKSIDLGLEKEL 160 Query: 151 HFMNAHGV----VQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGK-KYPNT 203 F G+ + G + T R + LS + QYM +K I GK K N Sbjct: 161 EFYTPAGLPSDMTKKGMDSGTTRGIYKLSLE-AAKYSQYMDIASMKEATIHDGKLKIKNR 219 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 N +G G G+KTG G+NI + + + V++G R++ Sbjct: 220 NLLLGE-EGIYGIKTGHHSKVGYNISVLSDKESMQIFTVVVGGPTYKKRDE 269 >gi|302385106|ref|YP_003820928.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302195734|gb|ADL03305.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 479 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 18/185 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--------LLDTNTGHVIAENYPDHPWNP 53 R+ V+I+ ++S +F +++ P T ++D ++G V+ P+ P Sbjct: 3 RRIKVLISCILVSQLF-LMTVYAKPDWPSDTGIQAEAGIVIDGDSGAVLFGQNIHAPYPP 61 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK++TA +V + A L +T SK N E + G +++++ L Sbjct: 62 ASITKILTALIVL-----ENADLNDMVTFSKDSVYNVEEGSGNKLNVDTGDKLSVEDCLY 116 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LI+ S N A A+AE + + + FV MN K LG +HF N G+ Y TA D Sbjct: 117 SLILHSCNQAANALAEHVAGSREAFVSMMNEKIKELGCVESHFDNPSGLNGDTQYVTAYD 176 Query: 170 MAILS 174 MA+++ Sbjct: 177 MALIA 181 >gi|171777393|ref|ZP_02919182.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283273|gb|EDT48697.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 410 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 21/234 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ +TG V+ E P AS+TK++T Y+ + + + T + IS A + ++ Sbjct: 35 VEASTGKVLYEKDATTPDGIASMTKILTVYLTYKEIDKGNLSWDTKVPISDYAYDLTANS 94 Query: 94 STFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + T++ + +V SAN A+A+AE + TE KFV M + G++ Sbjct: 95 DASNVPMEAREYTVEQLVNAAMVASANSAAIALAEKIGGTESKFVDMMQTQLQEWGINDA 154 Query: 151 HFMNAHGV--------VQHGHYTT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 NA G+ + G +T ARD+AI++ + T++P + + + Sbjct: 155 KLFNASGLNNSYLGDNIYPGSSSTDENTLSARDVAIIAQHLITEYPDVLKISNQTTADFE 214 Query: 197 GKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N+ + G DG+KTG T +G + VA++ + +I+V++ A Sbjct: 215 GSTMNTYNYMLKGMPYERDGVDGLKTGTTELAGASFVATSTENGMRIISVVMNA 268 >gi|118348894|ref|XP_001007920.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89289687|gb|EAR87675.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 328 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 55/283 (19%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTK+MT VV F K+ + + +S+NAS ++S K G +++ + L L+ Sbjct: 42 ASLTKMMTYIVVLRFCKKHQIDIDNLQFVVSRNASAILGTSSGLKVGDQISIRDLLFCLM 101 Query: 113 VKSANDIAVAIAES----LCKTEK------------------------------KFVQHM 138 + S ND A+ +AE+ L K +K FV M Sbjct: 102 LPSGNDAALCLAENIGSLLYKMQKGLVKSAYVIRNLNILNIQNESTAIQSCSVMSFVNEM 161 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 NN ++ LGL+ T F N HG+ + ++A+DMAIL+ I + + Q K + + K Sbjct: 162 NNMAQELGLNETKFSNPHGLHDKVNVSSAKDMAILTREIMKEDKFTLQLCQAKSYQFEVK 221 Query: 199 -KYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVASAIQGDQSL---IAVILGA 246 + NT + G GMKTG+T ++G + + Q D+ + + VI+ Sbjct: 222 NQIDNTCRQINLVNTNKLLEKPGYFGMKTGYTNSAGGCLASLFKQYDKIMAQTVEVIIVV 281 Query: 247 LDRNT-RNKVSASLLSMGFYNKTDRKKINYIIKD---FYQQNL 285 L ++ N+ + L + +Y +++N+ IK+ FY+Q+ Sbjct: 282 LKSDSMENRFVDTQLLVEWY----FRQLNHKIKERCKFYEQSF 320 >gi|167746445|ref|ZP_02418572.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662] gi|167653405|gb|EDR97534.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662] Length = 383 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 26/263 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASL 56 M++ +I L F ++ + L Y L+D +G V+ + AS Sbjct: 1 MKKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++T + K L T+SKNA+ P + + G + + L L+++S Sbjct: 61 TKILTCLYII-----KHCNLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESY 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMA- 171 ND AV +AE + + F + +N +++ G +THF+ +G+ + H TTA D+A Sbjct: 116 NDCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLAL 175 Query: 172 ILSWRIKT-DFPQYM----HYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCA 223 I+ IK +F + H F + GK+ N N + GA KTGFT Sbjct: 176 IMKQCIKNKEFLEITRAKSHSFH----DASGKRSFTCNNHNALLSMMDGAVSGKTGFTSK 231 Query: 224 SGFNIVASAIQGDQSLIAVILGA 246 +G+ V + + ++IAV+L Sbjct: 232 AGYCYVGAVKKNGMTMIAVVLAC 254 >gi|317132474|ref|YP_004091788.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] gi|315470453|gb|ADU27057.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] Length = 371 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +TG + + + PAS+TK++TA V + ++T P +++ A +N Sbjct: 57 DADTGQIYYQKDMHNRMYPASITKILTALVSVEN-GDPSDVITVPQDVTQ-AQGSSVANI 114 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G T+T++ + + SAND A+AIA+ + + FV MN + LG +HF Sbjct: 115 ALVPGDTITMEQLEYTMFLASANDSAIAIADHIGGSVSGFVDMMNQKATALGAKDSHFST 174 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAV- 207 +G+ +YT+A DMA+++ R P M YF + + KG + T + Sbjct: 175 PNGLPDPNNYTSAYDMALIT-RAAAQNPTLMRYFSARSFTLPVSALRKGAQSFTTLHKMM 233 Query: 208 --GTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + AD KTG+ SG +V A + ++LIAV+L + + LL Sbjct: 234 KKTAYYDADVEAGKTGWETMSGNTLVTVAQKNGRTLIAVVLDGANSEAIYGDTRHLLDYA 293 Query: 264 FYNKTD 269 F D Sbjct: 294 FAQPAD 299 >gi|219668743|ref|YP_002459178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219539003|gb|ACL20742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 352 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 19/256 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +L+ TG + E D PAS KL+T +V L+ + IT+ + + Sbjct: 92 YLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADEL-----ITLGEEV-KVE 145 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S FK G + + + + V SAND A A+A + T+++F+Q MN+ + LG + Sbjct: 146 GSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEQFIQAMNSYAAELGCQDS 205 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---------KKYP 201 F A G+ YTTA+D+AI++ ++ T+ P M Y K ++ ++ Sbjct: 206 QFKTADGMPAEDQYTTAKDLAIIAAKV-TETPVLMDYINQKKASVEWTDANGWKQVREIS 264 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN +G + G G+KTG T +G +V D L+ V+LG+ R T + LL Sbjct: 265 NTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITSEDGDLLLVLLGSKQRYTD---TVELLD 321 Query: 262 MGFYNKTDRKKINYII 277 G R + I+ Sbjct: 322 QGMAKIRTRSALKNIL 337 >gi|153813456|ref|ZP_01966124.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174] gi|149830477|gb|EDM85569.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174] Length = 334 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 9/157 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--A 86 PY L++ +G VI + + PAS+TK+MT + LK+ L ITI+ + A Sbjct: 78 PYAVLMNAKSGKVIGDINGEEQMYPASMTKIMTTILAIENLKD----LNQEITITNDMVA 133 Query: 87 SEYPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 Y + F+ T+ + L +++ S + VA+A+++ + FV MN ++ Sbjct: 134 DLYVQDAMQAGFQPNETVKAIDLLYGVMLPSGAECCVALADTVAGSVSDFVTLMNEKAEK 193 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD 180 LG++ THF + G+ + HY+TA+D+A +L + IK D Sbjct: 194 LGMTGTHFSSISGLHREDHYSTAKDIALLLRYAIKND 230 >gi|268610236|ref|ZP_06143963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens FD-1] Length = 386 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 18/229 (7%) Query: 33 LLDTNTGHVI-AENYPDH-PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L+ +TG ++ +EN+ + P AS TK+MT + L + L + +A Sbjct: 38 LISADTGEIVFSENFSEKLPM--ASTTKIMT-----TLLCLESGDLYDEFVVDSDAIHVE 90 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ +G T+T +++ S ND A A A L + + F MN+ +K LGLS T Sbjct: 91 GSSMGLVEGDTVTKYALCVGMLLPSGNDAANACAVKLAGSLENFAVMMNDKAKELGLSHT 150 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTN 204 +F+ G+ GH ++A DMA+L+ R + + +EI+ P NTN Sbjct: 151 YFVTPSGLEGDGHGSSAYDMAMLA-REALRNEIFREICSSENMEIEFGAPPYKRWLKNTN 209 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + + G G+KTGFT +G +V++ + + LI V L DR+ N Sbjct: 210 KLLSMYDGVYGVKTGFTDEAGRCLVSACERDGKDLICVTLN--DRDDWN 256 >gi|169827289|ref|YP_001697447.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus C3-41] gi|168991777|gb|ACA39317.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine carboxypeptidase) [Lysinibacillus sphaericus C3-41] Length = 348 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 11/168 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++I+ M I P S A Y +LD TG V+ + + ASLTK+ TA Sbjct: 2 LMIIVLMV----ILPQSSFARGG--SGYAVLDGETGRVLIGSNSNERLPIASLTKIWTAL 55 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V + + L + IS A+ S+ + G T+T++ L L+++S ND A A+ Sbjct: 56 VAI-----ENSDLQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATAL 110 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 AE + + + FV+ MN + GL+ T FMN G+ H ++ARD A Sbjct: 111 AEHVGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEEHLSSARDTA 158 >gi|225867886|ref|YP_002743834.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] gi|225701162|emb|CAW98055.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] Length = 412 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 23/235 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----Y 89 ++ ++G ++ E D + ASL+K++TAY+V+ ++ K + +TIS E Y Sbjct: 35 VELDSGKILYEKDADKTVSVASLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNY 94 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T+ LK LIV +AN A+A+AE + TE KFV M K G++ Sbjct: 95 TISNVPLD-ARKYTVKELLKALIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKEWGITD 153 Query: 150 THFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ H G + +A D+A+++ + +FP+ + E Sbjct: 154 AKVVNASGLPNHILGEHIYPGSSLDDDNQFSAADLALVTSHLLKEFPEVLKLSSQVQAEF 213 Query: 196 KGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 ++ + N+ + G DG+ ++ G + +A++++ + +I V+L A Sbjct: 214 NHQQIFSYNYMLKGMPNYRDGVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNA 268 >gi|7766853|pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S ND A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|218133984|ref|ZP_03462788.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC 43243] gi|217991359|gb|EEC57365.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC 43243] Length = 401 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 15/240 (6%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 +E K Y +L+D ++ +IA D PAS+TK+MT + +++ T + Sbjct: 148 SEKVKSAYISLVDIDSHEIIAGRQYDAKIYPASMTKVMTLIIAVENIRDMNDTFTMTTEL 207 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S + F G +T ++ L LI+ S D A A+A + +E+++ MN Sbjct: 208 IDPLVRENASRAGFDPGEKVTANDLLYGLILPSGADAAQALARMIAGSEEEYAGLMNAKC 267 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDF-PQYMHYFQIKGLEIKGKKY 200 +GL THF N G+ YTT +M I+ + ++ + + + +Q ++ Sbjct: 268 AEIGLKNTHFANTSGLYDADQYTTPVEMGMIMEYAMQNELCAKVLSTYQYT--TAPSPQH 325 Query: 201 PNTNWAVGTFLG------ADGM-----KTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 P T A+G+ KTG+ SG +V+ A++GD+ + V G ++ Sbjct: 326 PGGIALTSTMFSRMYGTEAEGVTITAGKTGYITESGNCLVSYAVKGDKHYVCVTSGGTNK 385 >gi|309776078|ref|ZP_07671069.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] gi|308916029|gb|EFP61778.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] Length = 305 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 13/224 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+ G V+ + PASLTKLM+ Y ++ + + P +I Sbjct: 53 YILIRQRDGKVLLHQNEEDEIAPASLTKLMSVYTALQHIENLQETVQVPASIFPKLEREQ 112 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + F +T ++ + ++ S D + +A +L +E FV MN ++ LGL T Sbjct: 113 ASMAGFIGNEEVTYEDLIYGALLPSGADACMTLAITLYGSEDAFVAEMNVQAQRLGLKNT 172 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI------------KGLEIKGK 198 F N G+ + GH ++ D+A L + PQ+ F +G+ I Sbjct: 173 RFRNCTGLDEEGHVSSVSDIATL-LKAAVQLPQFTEAFHAPYYSMAPSNKHSEGMTIYST 231 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + G KTG+T A+G + + A G+++ + V Sbjct: 232 MRSTMDQHALSDTAILGGKTGYTKAAGLCLASQAKIGNETWLFV 275 >gi|322517677|ref|ZP_08070540.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] gi|322123665|gb|EFX95257.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis ATCC 49124] Length = 432 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 30/246 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E S+TKL+TAY+V+ + + + + IS +YP Sbjct: 54 VEANTGKILYEKDATTSAGIGSITKLLTAYMVYKAVDQGDLKWNSKVDIS----DYPFEL 109 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + LD L ++ SAN ++A+AE + TE KFV M K+ G Sbjct: 110 TVSAGVSNIPLDARKYTVKQLLDATLIASANSASIALAEEIGGTESKFVDMMKAQLKDWG 169 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ +NA G+ + +A+D+A+++ + ++P+ + + Sbjct: 170 ITDAKIVNASGLNNSYLGDNIYPGSKSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTE 229 Query: 193 LEIKG-KKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + G K +N+ + G DG+KTG T +G + VA + + S+IAVIL + Sbjct: 230 ADFDGVNKLKTSNYMLKGQPSYRKGVDGLKTGTTDLAGASFVAHSNESGMSIIAVILNSD 289 Query: 248 DRNTRN 253 + +T + Sbjct: 290 NTDTDD 295 >gi|315651403|ref|ZP_07904428.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] gi|315486362|gb|EFU76719.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] Length = 326 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 22/230 (9%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNS 94 + G ++A PAS TK+MTA L K + L+ + + + E S + Sbjct: 87 DDGSLLASKAATKKMYPASTTKVMTA-----LLALKYSNLSDEVVVPDESVIDEAGASLA 141 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G +TLD L L++ S ND A AIA + + + FV+ MN +K +G T+F+N Sbjct: 142 GIHPGDKLTLDELLYGLMLPSGNDAANAIAVHIGGSVESFVKMMNEEAKRIGAVDTNFVN 201 Query: 155 AHGVVQHGHYTTARDM-AILSWRIK-TDFPQY-------MHYFQIKGLEI-----KGKKY 200 A+G+ HYTTA D+ IL+ +K + F Y + Y G +I G KY Sbjct: 202 ANGLSDDNHYTTAYDLYLILNEAMKDSRFVNYAGAASYSVTYTAADGSQITKNWKNGNKY 261 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDR 249 + + + KTG T A+G +V + D + I+V+L A +R Sbjct: 262 ITGQEVIPKGVSVEAGKTGTTFAAGSCLVLAGKNADGNRYISVVLKAQNR 311 >gi|70725304|ref|YP_252218.1| hypothetical protein SH0303 [Staphylococcus haemolyticus JCSC1435] gi|68446028|dbj|BAE03612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 383 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 23/238 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--- 85 P +L T+ G ++ ++ +PAS++K+MT Y+ + ++ K L + I+ Sbjct: 47 PSGVMLTTDQGQILYNYRGNNQVDPASMSKMMTLYLTYEAIENGKLKLNDKVKITNKYAT 106 Query: 86 ASEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S P S+ + K+G T T++ +K + S+N A+ + E + F MN +K+ Sbjct: 107 MSNLPNLSSVSLKQGQTYTIEELIKQTTLASSNAAAMILGEKVSGDNNTFTNKMNQQAKS 166 Query: 145 LGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 ++ T+F+N G Q +TA+DM +L + +PQ + ++ Sbjct: 167 FNMTNTNFVNPAGAQNSLLDQYAPSKFKKQDFPKSTAKDMNLLMQALIKKYPQILQISKL 226 Query: 191 KGLEIKGKKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G + +TN ++ G L G DG+KTG T G+NI + Q L I+ Sbjct: 227 TRDTQRGNTFKSTNLSLKGQPLYLPGTDGLKTG-TSNKGYNIALTNKQDQLRLNETIM 283 >gi|251777766|ref|ZP_04820686.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082081|gb|EES47971.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ PD PAS TK+MTA L + L + ++++ ++ + Sbjct: 38 LMDASTGEILFSKNPDKVLEPASTTKVMTA-----ILTLENCDLNEEVVVTEDFTKVDGT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG +T+ + L L+++S ND A A+A + + KF MN + +G THF Sbjct: 93 TIGLLKGDIVTVKDLLLGLLLESGNDAANALACHISSSIDKFAVLMNKKTIEIGAVNTHF 152 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAVGT- 209 N G+ H TTA D+A I++ IK D +++ ++ EI K T W Sbjct: 153 KNPSGLPDPEHLTTAHDLALIMNEAIKND--KFLELSKVMTYEIPIKNDSSRTIWINNKN 210 Query: 210 -FLGADGM---------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + + M K G+T S +A L+A L ALD+N + ++ Sbjct: 211 HMINKNSMYYYPYTLAGKNGYTTKSNHTYAIAAENNGHILVASYLNALDKNKNFEDMKTV 270 Query: 260 LSMGFYN 266 + GF N Sbjct: 271 FNYGFNN 277 >gi|118444189|ref|YP_877702.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118134645|gb|ABK61689.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 443 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 122/255 (47%), Gaps = 45/255 (17%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG VI A+N P PAS TKL+TA ++ K + T +I + EY Sbjct: 39 VIDAKTGEVIYAKNADASPMYPASTTKLLTALLLAENKKPTDMLTYTEGSIKQ--PEYTL 96 Query: 92 SN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + K G TM+ D+A+K L++ SANDIA IA+++ + F + MN+ K LGL Sbjct: 97 RSFLKGKLKVGDTMSADDAMKGLLLHSANDIASMIADNVGGNTENFAKMMNDKVKQLGLK 156 Query: 149 ATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 THF+ +G+ HYT+A D++I+ Y + + + +K K Sbjct: 157 NTHFVTPNGLDSGISDHYTSAYDLSIIGK------AAYSNEWIRNTMNLKKSKVELSNGI 210 Query: 200 --YP-NTNWAVGTFLGAD--------------------GMKTGFTCASGFNIVASAIQGD 236 YP N N VGT L + G KTGFT +G +VA + + Sbjct: 211 LGYPQNRNKLVGTVLDSKFLSTIGNISKNIPESNAVCVGGKTGFTTKAGRCLVAMFNKDN 270 Query: 237 QSLIAVILGAL-DRN 250 + LI V++ ++ D+N Sbjct: 271 RVLIGVVMKSVYDKN 285 >gi|46203560|ref|ZP_00051352.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 110 Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/79 (43%), Positives = 50/79 (63%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G V+ PW PAS+TKLMT YV +++ K L T +TIS A+ PPS Sbjct: 32 VVEADSGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKISLDTLLTISPAAAAEPPS 91 Query: 93 NSTFKKGSTMTLDNALKLL 111 FK G+ +TLDNALK++ Sbjct: 92 KMGFKPGTQITLDNALKII 110 >gi|145490887|ref|XP_001431443.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398548|emb|CAK64045.1| unnamed protein product [Paramecium tetraurelia] Length = 302 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 23/251 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEY 89 + ++D+ +G V+ + AS+TK+MT YVV + + T +S AS Sbjct: 46 WIIVDSQSGDVLYSFNENQKREIASITKIMTFYVVLNMCRTMNVQTNNTYAEVSFQASSV 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-------KTEKK-----FVQH 137 + + KG +++++ L++ S ND A+A+AE+ K + K F+Q Sbjct: 106 GGTTADLLKGDVVSIEDLFYGLMLPSGNDAAMALAENFGIYAMYQNKIKGKNPLIYFIQE 165 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY----MHYFQIK 191 MNN ++ L +S T + N HG+ + ++A D+A L ++ D F + +H+ I+ Sbjct: 166 MNNKARELRMSQTTYANPHGLNNKNNVSSAYDVAKLCNQLLKDEFFRKVVNTKVHFSTIQ 225 Query: 192 GLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 E + + NTN + + G G+KTG T +G + + ++S VILG ++ Sbjct: 226 DEEGFTRDVIWENTNKLL--YQGFKGIKTGNTSVAGPCLASYYQTANRSFTIVILGCRNQ 283 Query: 250 NTRNKVSASLL 260 R + LL Sbjct: 284 EDRWSETMQLL 294 >gi|29830922|ref|NP_825556.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] gi|29608035|dbj|BAC72091.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] Length = 276 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 26/253 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG + D + S TK+MTA VV S + L +T+ K S+Y Sbjct: 27 VMNNGTGKSLYTKAADTKLSTGSTTKIMTAKVVLS---QSNLNLDAKVTVQKAYSDYIVD 83 Query: 93 NSTFKK-----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNT 141 N+ G +T+ L L++ S D A A+A+ K F+ MN+T Sbjct: 84 NNYASSAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFLSKMNST 143 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIK---- 196 +K+LG++ THF + G+ +Y+T RD+ L S +K+ + + K + K Sbjct: 144 AKSLGMTNTHFDSFDGIGHGSNYSTPRDLTKLASSAMKSS--TFRTVVKTKSTKQKATTK 201 Query: 197 --GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 G +Y NTN +GT+ G G+KTG + F +V +A + +++I +L + Sbjct: 202 SGGYRYYNWDNTNPLLGTYTGTIGVKTGSGPEAKFCLVFAATRNGKTVIGTVLASTSVAN 261 Query: 252 RNKVSASLLSMGF 264 R + LL+ GF Sbjct: 262 RTADAKKLLNYGF 274 >gi|317058712|ref|ZP_07923197.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R] gi|313684388|gb|EFS21223.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R] Length = 390 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 15/219 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT V F ++ +A + I+K+ S + K G T TL + ++ + Sbjct: 169 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 228 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYT------ 165 SAN+ A A+A+ + K F++ MN ++ +G+S + + G+ YT Sbjct: 229 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPT--RYTKEPMDI 286 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTC 222 TAR + LS +P+YM IK ++I + N N +G G G+KTG+ Sbjct: 287 GTARGIYKLSLE-AIKYPEYMEIAGIKQMKIHNGRISIRNRNHLIGEE-GIYGIKTGYHK 344 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +NI ++ G + I VILG R+ LL Sbjct: 345 EAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 383 >gi|257452169|ref|ZP_05617468.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R] Length = 383 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 15/219 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT V F ++ +A + I+K+ S + K G T TL + ++ + Sbjct: 162 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 221 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYT------ 165 SAN+ A A+A+ + K F++ MN ++ +G+S + + G+ YT Sbjct: 222 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPT--RYTKEPMDI 279 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTC 222 TAR + LS +P+YM IK ++I + N N +G G G+KTG+ Sbjct: 280 GTARGIYKLSLE-AIKYPEYMEIAGIKQMKIHNGRISIRNRNHLIGEE-GIYGIKTGYHK 337 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +NI ++ G + I VILG R+ LL Sbjct: 338 EAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 376 >gi|163791201|ref|ZP_02185618.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7] gi|159873532|gb|EDP67619.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7] Length = 440 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 37/278 (13%) Query: 6 VIIAMAMLSNIFPFLSI-----AETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPAS 55 V + M +L P +S+ A T + P +++ TG V+ D AS Sbjct: 10 VFVTMLLLGTFSPLISMDTTVSAATIEQPKVEAAAAFIIEPTTGKVLLNQNGDEKLGIAS 69 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLL 111 +TK++T Y++ +K I IS+ A E Y SN + T +++ + + Sbjct: 70 MTKMITEYILLETIKNGDLAWDDQIEISEYAHEISQNYELSNVPLRIDDTYSVEELYQAM 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------- 162 + SAN +A+AE + EK FV M+ ++ G++ N G+ Sbjct: 130 AIYSANGATIALAEHIAGDEKAFVDMMHEKVESWGITNYEIYNTTGLSNFDLNGNIYPGS 189 Query: 163 -----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVGTF-- 210 + TAR MAI++ + TDFP + I + + N NW + Sbjct: 190 TENSENSMTARGMAIIAQHLITDFPDVLKTSSISKKTFREGTSDAIEMTNFNWMLPGLDH 249 Query: 211 --LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 DG+KTG T +G ++ +A Q +I +++ A Sbjct: 250 ERENVDGLKTGTTDFAGASMTGTAEQEGMRIITIVMNA 287 >gi|164686848|ref|ZP_02210876.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM 16795] gi|164604238|gb|EDQ97703.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM 16795] Length = 336 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 36/248 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NAS 87 Y ++D N+G +I D PAS TKL+TA V + L I + + N Sbjct: 55 YVVMDANSGEIIMSQDADKKIYPASTTKLLTAVVAI-----ENCNLDREIEVKQAALNKV 109 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S + GST T++ L +L++ SA D A IAE + + + F MN +K +G+ Sbjct: 110 DVESSIVGLRAGSTYTMEQLLYMLLIVSAGDAAEVIAEEVAGSSEAFATMMNEKAKQIGM 169 Query: 148 SATHFMNAHGVVQHGH---YTTARDMAILSWR----------IKTDFPQYMHYFQIKGLE 194 + ++F N G+ H + ++TA D+A L+ ++ F +++ K + Sbjct: 170 TDSYFDNPVGMDWHSNAKIHSTAHDIAKLTQYAMANYEIRKIVRHSFYTVDNFYNGKSIT 229 Query: 195 -------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 ++ +KY + + V G KTG T +GF + +A D VI Sbjct: 230 LGSSNGFLRKRKYADNLFTV------IGSKTGTTDKAGFALTTTA--KDNEGREVICAFF 281 Query: 248 DRNTRNKV 255 +TR+K+ Sbjct: 282 GNSTRDKM 289 >gi|94267082|ref|ZP_01290721.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta proteobacterium MLMS-1] gi|93452219|gb|EAT02875.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta proteobacterium MLMS-1] Length = 209 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P +++ G + + ++++SAND AVA+AE + E+ F + M + + +G Sbjct: 2 RLPAQGRSYRAG------DLVDAILMRSANDAAVALAEKIAGNERAFARLMTSKVRAMGA 55 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 + T NA+G+ G +TARD+A++ R + Q + GL G+ +N Sbjct: 56 NNTTLRNANGLTAQGQQSTARDLALILHRAMEHPELAQRLGTVSTNGL---GQTMRTSNR 112 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 A+ G+ G KTGFT A+ V +G+ LI ++G+ Sbjct: 113 ALWQINGSQGGKTGFTRAAQQTYVGKFQRGNHELIVALMGS 153 >gi|256848581|ref|ZP_05554022.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus coleohominis 101-4-CHN] gi|256714633|gb|EEU29613.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus coleohominis 101-4-CHN] Length = 400 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 35/287 (12%) Query: 1 MRQFLV--IIAMAMLSNI-FPFLSIAETNKLPYYTL--LDTNTGHVIAENYPDHPWNPAS 55 ++Q LV II + + + F L IA + + +D TG V+ + D AS Sbjct: 4 IKQVLVSFIITLVTVCGVCFNRLPIAHAATVDAHAAFAIDAQTGQVLYNHNGDQRLAVAS 63 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK------NASEYPPSNSTFKKGSTMTLDNALK 109 ++KL+T V+ + + K +T + I+ AS Y SN K T+ + Sbjct: 64 MSKLLTVAVIENEISSGKLKWSTKVKITSAEAKLSTASGY--SNVPLKASKQYTVKQLTQ 121 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 ++KS + +A+ + + ++FVQ M +K +GLS N G +++G Sbjct: 122 AALIKSGDAATIALTRAQGRNTQQFVQQMGTMAKRIGLSNYRLYNGVG-LENGDMASFKL 180 Query: 163 --------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT------NWAVG 208 + TA+D+A ++ + ++P + + + L GK YPN+ N A Sbjct: 181 PKTAKAAENQMTAQDVAKVARYLIQNYPAVLKITKQRTLRWDGKDYPNSNELLPGNAAAP 240 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + DG+KTG + +G +V++ +I V++ A +R ++ KV Sbjct: 241 QKVKVDGLKTGTSDKAGQCLVSTGTYQGHRIITVVMHANNRFSQTKV 287 >gi|145487772|ref|XP_001429891.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124396985|emb|CAK62493.1| unnamed protein product [Paramecium tetraurelia] Length = 318 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 117/274 (42%), Gaps = 44/274 (16%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T+ G +A P ASLTK+MTAY + T I I + A++ +++ Sbjct: 32 TSIGDELASKSPSLKLEVASLTKIMTAYTAIQLSDIIQFQNETFIRIPRIATQIGGTSAF 91 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIA---ESLCKTEK-------------------- 132 ++ T++L+ L L++ S ND A++IA S+ T + Sbjct: 92 LRRDDTLSLEELLYALMLPSGNDAAISIALHFGSILNTHRRQKIASYITCDTIQGFYDDT 151 Query: 133 ------KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +FV+ MN + LG+ + F N HG+ + +TA DM +S P Sbjct: 152 QMSNMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKANKSTALDMCRMS-SAYMKIPILKQ 210 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K + ++ NTN + F G+KTG T +G + S S+I V++GA Sbjct: 211 ICNSKSYSCRNYEWFNTNQLLH-FENYSGIKTGITPNAGACLAVSYESLLGSIIVVLIGA 269 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 D+ R + +TD K IN++ +++ Sbjct: 270 KDQKRR------------FEETD-KLINWVSREY 290 >gi|319937143|ref|ZP_08011550.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1] gi|319807509|gb|EFW04102.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1] Length = 406 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 139/341 (40%), Gaps = 41/341 (12%) Query: 8 IAMAMLSNIFPFLSI----AETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 I ++++ + FLSI A TN Y L D +T V E + PAS+TK Sbjct: 4 IVSSLIACLLIFLSIQPIHAYTNINIELYSQYAYLYDRDTSLVYMEKKSNEKIYPASMTK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++T + ++ + + ++T K E + + G +T ++ L ++ S D Sbjct: 64 ILTVSLALDYITDLQEVVTIKQADFKGVVEEGATVAGLFPGEKVTYEDLLYGALLPSGAD 123 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRI 177 A+A + V MN LGL THFMN G+ HYTTA +MA IL+ + Sbjct: 124 ACQALARLIFGDVDHMVTAMNEKVIELGLQQTHFMNVTGLHDEKHYTTAHEMALILNHAL 183 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA-----------DGMKTGFTCASGF 226 + +++ F+ + K K N W + + A +G K+GFT +G Sbjct: 184 QN--KEFVKVFEARSY--KSSK-GNHQW-ISSLQNAKDNKDMDVSLINGGKSGFTDEAGL 237 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKV----------SASLLSMGFYNKTDRKKINYI 276 ++ LI V A DR RN + S ++ Y K + ++ Sbjct: 238 TYASTMTIDQHRLILVTAKAEDRRKRNHIRDAATVSQYMDQSFHNVVLYKKDEEIDTFWV 297 Query: 277 IKDF---YQQNLSNEVPNISEEVCTTQKEIINYNTQ-MKEA 313 +K F YQ ++ + E+ I N Q KEA Sbjct: 298 LKSFQGSYQMKAQQDISLLVEKTINKSDLDIQVNIQKWKEA 338 >gi|260587729|ref|ZP_05853642.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM 20583] gi|260541994|gb|EEX22563.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM 20583] Length = 301 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD G ++ + PASLTK+MT + L + + I S Sbjct: 55 LLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQDAS 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F G +T + L ++ S + VA+AE C +EK+FV MN +K LG+ THF Sbjct: 114 MAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLGMKNTHF 173 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKT-DFPQYMHYF 188 N G+ HYTT D++ +L + +K DF + F Sbjct: 174 TNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAF 211 >gi|167767426|ref|ZP_02439479.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1] gi|167711401|gb|EDS21980.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1] gi|291559258|emb|CBL38058.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SSC/2] Length = 383 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 14/223 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G ++ E D AS TK++T + K L +SKNA+ P Sbjct: 35 IMDAESGKILYEKSKDQKMPNASTTKILTCLYIL-----KHCDLDQMAEVSKNAAMQPKV 89 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + + L L+++S ND AV +AE + + F + MN ++NLG THF Sbjct: 90 RLGVREGEKYKVKDLLYGLMLESYNDCAVVLAEHAEGSVENFEKRMNQMAENLGTLNTHF 149 Query: 153 MNAHGV----VQHGHYTTARDMA-ILSWRIKT----DFPQYMHYFQIKGLEIKGKKYPNT 203 + +G+ + H TTA+D+A I++ IK + Q Y G + N Sbjct: 150 VTPNGLDGIDKKGRHETTAQDLAKIMARCIKNQQFLEITQTKQYTFTDGSRKRRFICNNH 209 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + + G KTG+T +G+ V + Q + ++ +L + Sbjct: 210 NALLSSMQGVISGKTGYTSKAGYCYVGAVKQKNMTMTFSVLAS 252 >gi|154502813|ref|ZP_02039873.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149] gi|153796696|gb|EDN79116.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149] Length = 313 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 43/241 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + + NTG ++ + W PAS+TKLMT + + +K L + +++ A Sbjct: 72 ITEINTGQILWQENAQKQWPPASMTKLMTILLAYEEIKAGNLELESTAEVNERYTDIAGR 131 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y SN+ + G++ T+ + L+IV S+ +A+ + +FV+ MN ++ LG+ Sbjct: 132 YALSNNKMQPGASYTVAELMDLIIVPSSAAATYMLADMVESDPDRFVERMNQKAQELGMV 191 Query: 149 ATHFMNAHGV----VQHGH----------YTTARDMAIL-SWRIK--------TDFPQ-- 183 T + N GV +Q H TT D A+L ++ IK T +PQ Sbjct: 192 NTKYFNCVGVTNNLLQPYHPVSQPLDGDNITTPEDYAMLCTYLIKTYPDILNHTKYPQIT 251 Query: 184 ------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 Y +F + ++G KY G DG+KTG + +GF + G Sbjct: 252 VKEGTPYEEHFTSYQISLEGAKY--------GLEGTDGLKTGSSDTAGFKLFVHCKTGGH 303 Query: 238 S 238 + Sbjct: 304 A 304 >gi|296278518|pdb|3MFD|A Chain A, The Structure Of The Beta-Lactamase Superfamily Domain Of D- Alanine Carboxypeptidase From Bacillus Subtilis gi|296278519|pdb|3MFD|B Chain B, The Structure Of The Beta-Lactamase Superfamily Domain Of D- Alanine Carboxypeptidase From Bacillus Subtilis Length = 334 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 18/220 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ AS+TK+ TA + K + +T+S NA S Sbjct: 14 IIDGASGRVLYAKDEHQKRRIASITKIXTAVLAIESGKXDQT-----VTVSANAVRTEGS 68 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G + L + + L ++S ND AVAIAE + + FV N ++ LG T F Sbjct: 69 AIYLTEGQKVKLKDLVYGLXLRSGNDAAVAIAEHVGGSLDGFVYXXNQKAEQLGXKNTRF 128 Query: 153 MNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQ-IKGLEIKGKKYPNTNWA---- 206 N HG+ H HY+TA D AIL T + + +Q I G +I + + W Sbjct: 129 QNPHGLDDHENHYSTAYDXAIL-----TKYAXKLKDYQKISGTKIYKAETXESVWKNKNK 183 Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G KTG+T + +V++A + LIAV + Sbjct: 184 LLTXLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTI 223 >gi|153811304|ref|ZP_01963972.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174] gi|149832431|gb|EDM87515.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174] Length = 334 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 8/140 (5%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK++TA + F K + + +TI++ E F+ G +T+D + Sbjct: 109 PASITKIITALLAF-----KNSNMDDVVTITQENITLEEGSQVVGFQVGDQVTMDQLVHC 163 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+V S ND A AIA + + + FV MN + LG + THF N HG+ HYTT D+ Sbjct: 164 LLVYSGNDAASAIATHVGGSTENFVAMMNEYAAQLGCTGTHFTNPHGLQDENHYTTPYDI 223 Query: 171 AILSWRIKTDFPQYMHYFQI 190 ++ + +P++ Q+ Sbjct: 224 YLM-LKEALKYPEFTEITQL 242 >gi|313898282|ref|ZP_07831819.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] gi|312956664|gb|EFR38295.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] Length = 335 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 70/141 (49%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D V+ E D PASLTK++TA V ++ +T + +E Sbjct: 71 YAMVIDLQDQQVLYEKNSDERLFPASLTKVLTAIVALDNMENLHKKITITEQDIEGLAEA 130 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + + G +TL++ L LI+ S D A A+A L + KFV+ MN + +G+ Sbjct: 131 NASVAGLEAGEQVTLEDLLYALILPSGADGANALANHLNGSISKFVKDMNEKANGMGMLH 190 Query: 150 THFMNAHGVVQHGHYTTARDM 170 THF N G+ HYTT +DM Sbjct: 191 THFTNTTGLQDKQHYTTLQDM 211 >gi|188589932|ref|YP_001919969.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] gi|188500213|gb|ACD53349.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] Length = 438 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ PD PAS TK+MTA L + L + ++++ ++ + Sbjct: 38 LMDASTGEILFSKNPDKVLEPASTTKVMTA-----ILTLENCDLNEEVVVTEDFTKVDGT 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG +T+ + L L+++S ND A A+A + + KF MN + +G THF Sbjct: 93 TIGLLKGDIVTVKDLLLGLLLESGNDAANALACHISSSIDKFAVLMNKKAIEIGAINTHF 152 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAVGT- 209 N G+ H TTA D+A I++ IK D +++ ++ EI K T W Sbjct: 153 KNPSGLPDPEHLTTAHDLALIMNEAIKND--KFLELSKVMTYEIPIKNDSSRTIWINNKN 210 Query: 210 -FLGADGM---------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + + M K G+T S +A L+A L ALD+N + ++ Sbjct: 211 HMINKNSMYYYPYTLAGKNGYTTKSNHTYAIAAENNGHILVASYLNALDKNKNFEDMKTV 270 Query: 260 LSMGFYN 266 + GF N Sbjct: 271 FNYGFNN 277 >gi|302544682|ref|ZP_07297024.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces hygroscopicus ATCC 53653] gi|302462300|gb|EFL25393.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces himastatinicus ATCC 53653] Length = 309 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 22/251 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +++ TG + + D + S TK+MTA VV L + L + +TI K S+Y Sbjct: 60 VMNNGTGKDLYKKAADTRLSTGSTTKIMTARVV---LAQPNLNLNSKVTIQKAYSDYIVD 116 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNT 141 S++ G +T+ L L++ S D A A+A+ K F+ MN+T Sbjct: 117 NNWASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNST 176 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGL 193 +K+LGL T+F + G+ +Y+T RD+ L+ +R + K Sbjct: 177 AKSLGLKNTNFDSFDGIGHGKNYSTPRDLTKLASSAMKYSTFRSVVKTKKTTQKTVTKSG 236 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + + NTN +GT+ GA G+KTG + + +V +A + +++I +L + TR Sbjct: 237 GYRNMTWENTNPLLGTYSGAIGVKTGSGPEAKYCLVFAATRSGKTVIGTVLASSSVATRT 296 Query: 254 KVSASLLSMGF 264 + LL+ GF Sbjct: 297 SDAKKLLNYGF 307 >gi|291550439|emb|CBL26701.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14] Length = 452 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 19/229 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF--SFLKEKKAMLTTPITISKNASEYP 90 L+D ++G ++ AS TK+MT + S + + + +T+S A+ P Sbjct: 71 LMDADSGRILFSKNGQEERAMASTTKIMTCILALESSIMDSENQI----VTVSDQAATQP 126 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G L + L L+++S ND VAIAE++ + +KF MN ++ +G +T Sbjct: 127 KVHLGMVAGERFYLKDLLYSLMLESHNDSGVAIAEAVAGSVEKFADLMNQKARTIGCYST 186 Query: 151 HFMNAHGVVQHG----HYTTARDMA------ILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 +F+ +G+ H+TTA D+A I++ + + DF + +++GK+ Sbjct: 187 YFITPNGLDAADSNGIHHTTAEDLARIMRYCIMNSKKQEDFLTITRTETYQFQDVEGKRS 246 Query: 200 --YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N N + GA KTGFT +G+ V + + +++ I +L Sbjct: 247 FSCYNHNAFLNMMDGALSGKTGFTSDAGYCYVGALRRDERTFIVALLAC 295 >gi|157736385|ref|YP_001489068.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri RM4018] gi|157698239|gb|ABV66399.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri RM4018] Length = 273 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 25/228 (10%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +I + +PASLTK+MTA + K + + +TI+ + + P+ Sbjct: 44 DLTKKQLIFSKDANQQVSPASLTKIMTAILAIESNK-----MDSIVTITADMKKVEPTIL 98 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFM 153 FK G + L + + +++SAND A +IA L +K KFV MN +K LG++ T F Sbjct: 99 GFKVGEKIYLRDLVNAALIRSANDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQ 158 Query: 154 NAHGVVQHGHYTTARDMAILS-WRIK-TDFPQYMH--YFQIKGLEIK--------GKKYP 201 N G H +TA D+ L+ + IK + F + + K + K K P Sbjct: 159 NPCGFDAKNHKSTASDLLKLTEYAIKNSTFNAIVRKNSYSFKAINTKRTYTVYTSNKLQP 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + G+KTG+T +G ++A A +G + ++ V+L + +R Sbjct: 219 KEKYMI-------GVKTGYTNQAGPCLIARAKEGKKDILLVMLNSHNR 259 >gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella multipartita DSM 44233] gi|258554757|gb|ACV77699.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella multipartita DSM 44233] Length = 550 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 16/260 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A P + PAS KL+TA V+ L ++ T + A + Sbjct: 114 WLIADLDTGEVLAAKDPHGRYRPASTLKLLTAQVMLKNLTNLDQVVQG--TQADTAQDG- 170 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G T T+ + L L++ S ND A A+A + +K + MN T+K LG T Sbjct: 171 -TRVGIEAGGTYTVRDLLSYLVMISGNDAANALARTNGGYDKT-IADMNATAKALGALDT 228 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTD-----FPQYMHYFQIKGLEIKGKKY--PNT 203 G+ G T+A D+A+ + K D FP+ + I+ G+ Y N Sbjct: 229 RAATPSGLDGPGQSTSAYDLALFA---KADMAIAPFPEIIARPDIRVPAASGEGYIAAND 285 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-SASLLSM 262 N + + GA G KTGFT +G V A + + L+ ++ + R + +ASLL Sbjct: 286 NQLLAQYPGALGGKTGFTDDAGNTFVGMAAKDGRRLVVTMMHGTQQPRRQWMQAASLLDW 345 Query: 263 GFYNKTDRKKINYIIKDFYQ 282 GF + ++ + Sbjct: 346 GFALPAGTAPVGTLVTSLAE 365 >gi|187932735|ref|YP_001884791.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str. Eklund 17B] gi|187720888|gb|ACD22109.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B str. Eklund 17B] Length = 443 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D +TG ++ PD PAS TK+MTA + + L + ++++ ++ + Sbjct: 42 LMDASTGEILFSKNPDKVLEPASTTKVMTAILTL-----ENCDLNEEVVVTEDFTKIDGT 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG +T+ + L L+++S ND A A+A + + KF MN + +G THF Sbjct: 97 TIGLLKGDIVTVKDLLLGLLLESGNDAANALACHVSSSIDKFAVLMNKKATEIGAVNTHF 156 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAVGT- 209 N G+ H TTA D+A I++ IK D +++ ++ EI K T W Sbjct: 157 KNPSGLPDPEHLTTAHDLALIMNEAIKND--KFLELSKVMTYEIPIKNDSSRTIWINNKN 214 Query: 210 -FLGADGM---------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + + M K G+T S +A L+A L ALD++ + ++ Sbjct: 215 HMINKNSMYYYQYTLTGKNGYTTKSNHTYTVAAENNGHILVASYLNALDKDKNFEDMRTV 274 Query: 260 LSMGFYN 266 + GF N Sbjct: 275 FNYGFNN 281 >gi|317126753|ref|YP_004093035.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] gi|315471701|gb|ADU28304.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] Length = 479 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 62/322 (19%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 E++ L L+D +TG ++ D P PAS+ K+M+ Y++ +++ + I+ Sbjct: 32 ESDLLETGILVDADTGKILYGRNIDQPLPPASMVKMMSIYLIHESIEKGDISWDDIVYIN 91 Query: 84 KN-----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + + SN +K T+ + + + SAN +A+AE + +E FV+ M Sbjct: 92 DYLVNDLSKQINLSNVPLRKDEDYTVRELYESIAIYSANASMMAVAEHIAGSEGSFVEMM 151 Query: 139 NNTSKNLG------------------------LSATHFMNAHGV--------------VQ 160 N K LG L F+N+ G+ + Sbjct: 152 NEKGKELGMGNLLREEGEKHGISNLNEIAEANLGDFQFVNSTGLPNSVLLENRPSGTEID 211 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK----YPNTNWAV---GTFLG 212 ++ +AR A L++ + D+P+ + I + K G + PN N + G F Sbjct: 212 DDNFMSARATATLAYHLLNDYPEVLETASIPEMTFKEGTEDAIVMPNWNKMLEGRGHFYE 271 Query: 213 -ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 ADG+KTG T A+G +A++ + LI V++G L R ++ L Y++T RK Sbjct: 272 YADGLKTGTTTAAGACFTGTAVKNGRRLITVVMG-LPRPLTSRPEDDLAR---YDET-RK 326 Query: 272 KINYIIKDF-----YQQNLSNE 288 + Y +F Y +N++ E Sbjct: 327 LMEYGFNNFSRVELYPENMTIE 348 >gi|323691411|ref|ZP_08105685.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum WAL-14673] gi|323504554|gb|EGB20342.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum WAL-14673] Length = 513 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 23/228 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNAL 108 PAS+TKL+TA VV + A L +T S +A E + + + G MT+ + L Sbjct: 93 PASITKLLTALVVI-----ENANLDDMVTFSDDAIHNVEEGAGNKNALEPGDKMTVKDCL 147 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +++ S+N A A+AE + + FV MN K LG +HF N G+ TT Sbjct: 148 YHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPSGLNDDTQLTTVY 207 Query: 169 DMAILSWRIKTDFPQYMHYFQIK------------GLEIKGKKYPNTNWAVGTFLGADGM 216 DMA++ + P + K G+ IK + T + A Sbjct: 208 DMALIG-TAAYENPVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTEGDPNYYQAAIAG 266 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 KTGFT +G +V A + D+ LIAV + + + T + + +LL GF Sbjct: 267 KTGFTSIAGQTLVTYASKDDRKLIAVTMKSTEF-THYQDTKALLDFGF 313 >gi|168180079|ref|ZP_02614743.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226948683|ref|YP_002803774.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] gi|182669152|gb|EDT81128.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226843155|gb|ACO85821.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] Length = 424 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 18/255 (7%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L+I + + SN+F + ++N P +D TG +I D PAS TK Sbjct: 11 LLIFILTLTSNVF---AAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +TA ++ + + T S+ + G T+ +N + L++ S ND Sbjct: 68 YLTALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A I ++L K F MN + L L THF+ +G+ HYTTA D++++S R Sbjct: 128 VAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS-RAA 186 Query: 179 TDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGM---KTGFTCASGFNIVASA 232 P K I KG K N LG DG KTG+T A+G +V Sbjct: 187 LKNPWVYQSSNKKESSIVTSKGTKMAIEN--SNKLLGKDGCVAGKTGYTDAAGRCLVTLF 244 Query: 233 IQGDQSLIAVILGAL 247 + + ++ V++G++ Sbjct: 245 NRDGRKILGVVMGSV 259 >gi|291460023|ref|ZP_06599413.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417364|gb|EFE91083.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] Length = 338 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 1/143 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y + D + G +IA+ NPAS+TK+MT V L + LT I + Sbjct: 90 YAVVYDLDRGRIIADKNSSEVINPASMTKVMTLLVCAEHLPDLDKRLTVTQDIVDYVHAH 149 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G +++ + L +I+ S D + ++ + +E FV MN ++ LGLS+ Sbjct: 150 DASNCGLEAGEQISVRDLLYGVILPSGADAVMLLSREIAGSEAAFVGLMNQKARELGLSS 209 Query: 150 -THFMNAHGVVQHGHYTTARDMA 171 HF NA G+ H+ T +D A Sbjct: 210 GAHFSNATGLYDPNHHMTVKDTA 232 >gi|197301728|ref|ZP_03166798.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC 29176] gi|197299168|gb|EDY33698.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC 29176] Length = 339 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 22/214 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKL 110 PAS TKLMTAY+ + K L +T++ + + + G + L + L Sbjct: 112 PASTTKLMTAYLALKYGK-----LEDMVTVTDSVTGFAIDEVVCGLYPGGQVKLYDLLCG 166 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++KS ND VAIAE + + + F + MN +K LG + THF+N HG+ + HYTTA D+ Sbjct: 167 LLLKSGNDCGVAIAEYISGSVEAFAELMNEEAKELGATGTHFVNPHGLHEDDHYTTAYDL 226 Query: 171 -AILSWRIKTD-FPQY--MHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGM----- 216 I + I+ D F + M + + + G + P +++G +G+ Sbjct: 227 YLIFNACIQNDTFKEIISMSSYTMSIGDAAGNTHSLEVLPTNYYSLGKTEAPEGIKVFGG 286 Query: 217 KTGFTCASGFNIVA-SAIQGDQSLIAVILGALDR 249 KTG T +G ++ S I+VI+GA D+ Sbjct: 287 KTGTTDQAGCCVILYSEDMEAHPYISVIMGAEDK 320 >gi|323483146|ref|ZP_08088538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323403566|gb|EGA95872.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] Length = 512 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 23/228 (10%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNAL 108 PAS+TKL+TA VV + A L +T S +A E + + + G MT+ + L Sbjct: 93 PASITKLLTALVVI-----ENANLDDMVTFSDDAIHNVEEGAGNKNALEPGDKMTVKDCL 147 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +++ S+N A A+AE + + FV MN K LG +HF N G+ TT Sbjct: 148 YHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPSGLNDDTQLTTVY 207 Query: 169 DMAILSWRIKTDFPQYMHYFQIK------------GLEIKGKKYPNTNWAVGTFLGADGM 216 DMA++ + P + K G+ IK + T + A Sbjct: 208 DMALIG-TAAYENPVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTEGDPNYYQAAIAG 266 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 KTGFT +G +V A + D+ LIAV + + + T + + +LL GF Sbjct: 267 KTGFTSIAGQTLVTYASKDDRKLIAVTMKSTEF-THYQDTKALLDFGF 313 >gi|227874487|ref|ZP_03992662.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227839676|gb|EEJ50131.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 382 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 20/252 (7%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 +A LS SI Y + D + G ++ E NPAS+TK+MT V L Sbjct: 115 LAKLSGNGQTKSIGSEVNANYAVVFDLDQGTILGEKNSSVSMNPASMTKVMTLLVAVENL 174 Query: 70 KEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + L ITI+++ +Y SN F G + + + L +I+ S D +A+A+ Sbjct: 175 PD----LEKKITITQDIVDYVKARGASNCGFVAGEQVRVKDLLYGVILPSGADAVLALAK 230 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQ 183 + +E FV MN +++LGLS+ F NA G+ H+ +D+ I++ ++ + Sbjct: 231 EIAGSEAGFVALMNKKAQDLGLSSDCKFQNATGLYHSTHHMNVKDIGEIMAAAMRNSLAR 290 Query: 184 YM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADG-------MKTGFTCASGFNIVASAI 233 + +QI G TN V G D KTGF S F V+S Sbjct: 291 EVLSTENYQIPATNKHGDGIKLTNLFVQRIKGQDTGGASVTMAKTGFVRQSMFCAVSSGK 350 Query: 234 QGDQSLIAVILG 245 + + V+ G Sbjct: 351 GANGKNLLVVTG 362 >gi|168184273|ref|ZP_02618937.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|237794758|ref|YP_002862310.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] gi|182672602|gb|EDT84563.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|229261502|gb|ACQ52535.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] Length = 424 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 32/262 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L+I + SN+F + ++N P +D TG +I D PAS TK Sbjct: 11 LLIFIFTLTSNVF---AAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK---GSTMTLDNALKLLIVKS 115 +TA ++ + K P T + + N G T+ +N + L++ S Sbjct: 68 YLTALLL---AENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFS 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS- 174 ND+A I ++L K F MN + L L THF+ +G+ HYTTA D++++S Sbjct: 125 GNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISR 184 Query: 175 ------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM---KTGFTCASG 225 W ++ + KG ++ NTN LG DG KTG+T A+G Sbjct: 185 AALKNPWVYQSSNKKESSIVTSKGTKM---TIENTN----KLLGKDGCVAGKTGYTDAAG 237 Query: 226 FNIVASAIQGDQSLIAVILGAL 247 +V + + ++ +++G++ Sbjct: 238 RCLVTLFNRDGRKILGIVMGSV 259 >gi|253682534|ref|ZP_04863331.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] gi|253562246|gb|EES91698.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] Length = 444 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 120/258 (46%), Gaps = 51/258 (19%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG VI A+N P PAS TKL+TA ++ + T +T + AS+ P Sbjct: 39 VVDAKTGEVIYAKNVDTSPMYPASTTKLLTALLL-----AENKQPTDILTYTDGASKQPE 93 Query: 92 SN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 K G M+ D+A+K L++ SANDIA IAE++ F + MNN K L Sbjct: 94 YTLRSFLKGKLKVGDKMSADDAMKGLLLHSANDIAYMIAENVAGNVDNFAKMMNNKIKKL 153 Query: 146 GLSATHFMNAHGVVQH--GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---- 199 GL+ THF+ +G+ HYT+A D++I+ Y + + K + +K K Sbjct: 154 GLTHTHFVTPNGLDNGITNHYTSAYDLSIIGK------AAYENEWVRKTMSLKKDKIELT 207 Query: 200 -----YP-NTNWAVGTFLGAD--------------------GMKTGFTCASGFNIVASAI 233 YP N N +G L ++ G KTG+T +G +VA Sbjct: 208 NGVLGYPENRNKLLGQTLDSNFNSKISINIKNVPVSNAICIGGKTGYTSKAGRCLVAMFN 267 Query: 234 QGDQSLIAVIL-GALDRN 250 + + LI V++ A D+N Sbjct: 268 KDGRILIGVVMKSAYDKN 285 >gi|167578731|ref|ZP_02371605.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis TXDOH] Length = 349 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 26/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L PI ++ + + Sbjct: 102 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVL----DSKAPLDEPIEVTDDDRDLDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 158 TGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNQKARSLGMVDTY 217 Query: 152 FMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + +TARD+ A + + ++ + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGL--RTLYYHSTNIL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W +G KTG+ SG +V G + ++ V+L + R++ +A L Sbjct: 275 LHDDAWDIGI------QKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARL 328 Query: 260 LSM 262 +M Sbjct: 329 RTM 331 >gi|268680339|ref|YP_003304770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfurospirillum deleyianum DSM 6946] gi|268618370|gb|ACZ12735.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfurospirillum deleyianum DSM 6946] Length = 309 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 15/205 (7%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA + + + +TI+++ + P+ + + G L + +K + Sbjct: 61 PASLTKIMTAMLAI-----ESGRMNDVVTITRDMIQVEPTKAGLRIGEKFYLRDLVKAAM 115 Query: 113 VKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 V SAND A++I L FV MN +K LG++ T+F N G H++TA D+ Sbjct: 116 VMSANDAAMSIGVYLGDGNVNTFVAKMNRKAKQLGMNNTNFTNPCGFDIGDHHSTALDLL 175 Query: 172 ILS-WRIKTDFPQYMHYFQIKGLEIKG----KKYP--NTNWAVGTFLGADGMKTGFTCAS 224 +S + IK Q+ ++K + K + Y N + + A G+KTG+T + Sbjct: 176 KMSEYAIKN--SQFNEMAKLKRHDFKSLNTKRAYAAYTHNKLLNNYKYAVGIKTGYTRKA 233 Query: 225 GFNIVASAIQGDQSLIAVILGALDR 249 G ++A A G++ ++ V+L + R Sbjct: 234 GPCLIARAKNGNKDVLVVMLNSEQR 258 >gi|167616867|ref|ZP_02385498.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis Bt4] gi|257140788|ref|ZP_05589050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 349 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 26/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L PI ++ + + Sbjct: 102 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVL----DSKAPLDEPIEVTDDDRDLDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 158 TGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVDTY 217 Query: 152 FMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + +TARD+ A + + ++ + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGL--RTLYYHSTNIL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W +G KTG+ SG +V G + ++ V+L + R++ +A L Sbjct: 275 LHDDAWDIGI------QKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARL 328 Query: 260 LSM 262 +M Sbjct: 329 RTM 331 >gi|94991764|ref|YP_599863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] gi|94545272|gb|ABF35319.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] Length = 231 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 20/173 (11%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 +++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K + T I Sbjct: 36 TVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95 Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFV 135 T + A+ Y SN+ G + + + + V S+N V IA L + F+ Sbjct: 96 TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFI 155 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------------TTARDMAIL 173 +N T+K LG++ THF NA G G+Y TTARD++ L Sbjct: 156 DRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKL 208 >gi|257440394|ref|ZP_05616149.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257197143|gb|EEU95427.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 439 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NA 86 Y ++D +TG V+A+ + +PAS+TK+MT + + K + +T+S + Sbjct: 36 YCIIDADTGLVLAQQNMNEELHPASITKVMT--LGLACEKAQGKWDNVKLTVSHEDVYSL 93 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNL 145 + S+ ++G + L +AL ++ SAND A +AE + V MN +K L Sbjct: 94 AGTDSSHIALQEGEEVPLTDALYATMMASANDGANLLAEYFGGGSIEGGVAAMNAQAKEL 153 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMA-ILSWRI 177 GL THF N HG+ HYT+ DMA IL W + Sbjct: 154 GLEHTHFANPHGISDEDHYTSCYDMAQILRWAL 186 >gi|268319018|ref|YP_003292674.1| hypothetical protein FI9785_527 [Lactobacillus johnsonii FI9785] gi|262397393|emb|CAX66407.1| dacA [Lactobacillus johnsonii FI9785] Length = 308 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 23/233 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TKL+T Y+ +KEKK T +T ++ S ++ + G T+ Sbjct: 76 ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYY 135 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHY 164 ++KSAN+ A +A ++ +E F+ M+ ++ L+ F+ G+ G Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMSQQARKWKLNNAKFVTVDGLPDKKKNFLGMT 195 Query: 165 TT------ARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYPNTNWAVGTFL 211 TT A DMAI++ ++ T++P+ ++ YFQ L I K N + Sbjct: 196 TTVENKMSANDMAIIARKLITNYPEILNTTKLARAYFQ-NTLMINNNKMLNGLSYYDSIF 254 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G + + + +I VILGA + N R + LLS F Sbjct: 255 PVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCF 307 >gi|83717156|ref|YP_440158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|83650981|gb|ABC35045.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 373 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 26/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L PI ++ + + Sbjct: 126 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVL----DSKAPLDEPIEVTDDDRDLDKF 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 182 TGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVDTY 241 Query: 152 FMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + +TARD+ A + + ++ + Y GL + Y +TN Sbjct: 242 FENPTGLSKH-NVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGL--RTLYYHSTNIL 298 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W +G KTG+ SG +V G + ++ V+L + R++ +A L Sbjct: 299 LHDDAWDIGI------QKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARL 352 Query: 260 LSM 262 +M Sbjct: 353 RTM 355 >gi|159038233|ref|YP_001537486.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola CNS-205] gi|157917068|gb|ABV98495.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola CNS-205] Length = 416 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 20/284 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITISKNASE 88 + + D +TG V+ P PAS+ KL+ A + L ++ + T + I + +S Sbjct: 92 WLVADLDTGQVLGACGPHEHGTPASVQKLLLAAALMPRLDPQQVVTVTKEDLDIERGSSA 151 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLG 146 G ++ L+++S N+ A +A + V+ MN ++ LG Sbjct: 152 V-----GLLAGGRYPVETVWLGLLLQSGNEAANVLARLGGGAEGRAGGVRAMNEFAEYLG 206 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKK-- 199 TH G+ G +T+A D+A+++ R+ P + Y +I E GKK Sbjct: 207 ARQTHAATPSGLDGPGQFTSAYDLALIA-RVCFADPTFRRYALTETHRIPAQEQLGKKGF 265 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSA 257 N N VG + GA G KTGFT + V +A + + L+ +LGA R R + A Sbjct: 266 QIQNGNPLVGRYPGALGGKTGFTSLARHTYVGAAERDGRRLVVTLLGAESRPMRGWEQGA 325 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 LL GF D + +++ + P+++ + + Sbjct: 326 VLLDWGFALPRD-ASVGRLVEPGQPTPTPTQSPSVTPPMAADPR 368 >gi|293400361|ref|ZP_06644507.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306761|gb|EFE48004.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 416 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 22/237 (9%) Query: 53 PASLTKLMTAYVVFS----FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 PAS+TK+MTA VV F K +A+ + I AS + G M + +AL Sbjct: 62 PASMTKIMTAIVVIENTKHFDKIVEAVPSDTKVIRDEASI-----AGLLIGERMRIQDAL 116 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 +++ S +D A +A K FV MNN +K L L THF N +G HYTT + Sbjct: 117 SCMMLASGSDAAKMLARYTTGNTKDFVDLMNNKAKELHLQDTHFTNVYGKYDKQHYTTVK 176 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN---TNWAVGTFLGAD-------GMKT 218 DMA+L + P + ++IK + N+ TF A G K+ Sbjct: 177 DMALL-MDYAMENPIFQKIVASDQVKIKTNAFEERIAENFVYATFDKAKLDHSYITGAKS 235 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL--DRNTRNKVSASLLSMGFYNKTDRKKI 273 G +G N+ ++A + + ++ V A +++T + V A+ L ++ +K I Sbjct: 236 GSMDETGLNLASTAEKDGRRVVIVSAEAPIDEKHTNHVVDAAHLYQWYFTNYQKKII 292 >gi|315652015|ref|ZP_07905016.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] gi|315485662|gb|EFU76043.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM 3986] Length = 492 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 48/289 (16%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---E 88 L+D ++G VI +N +H + PAS+TK++TA +V + L +T S+NA E Sbjct: 53 LMDADSGAVIYGKNMHEH-YYPASITKILTALIVV-----ENCNLDDTVTFSRNAVYNVE 106 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S++ G T+T+ + L ++++SAN+ A A+AE + F + MN+ + +LG Sbjct: 107 SGSSSAGIDVGDTLTVRDCLYAMLLQSANEAANALAEHTAGSIDAFAKMMNDKAASLGCK 166 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSW-----------------------RIKTDFPQYM 185 +HF N G+ HYT+A D A++S R+ T Y Sbjct: 167 DSHFANPSGLNDPEHYTSAYDYALISRAAFKNPTVTEIDSATYYNLPPTSRVPTGQTLYS 226 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 H+ ++ + G Y N A KTG+T +G +V A LI V+L Sbjct: 227 HHSMLR--KNSGNYYKN----------AICGKTGYTTLAGNTLVTYARTDKIGLITVVLN 274 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 T + SLL GF N D K + I ++ NL+ +PN +E Sbjct: 275 G--NKTHYIDTQSLLDFGFANFKDIKLKSSSIGTSFKSNLT-LIPNFNE 320 >gi|256827158|ref|YP_003151117.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM 15641] gi|256583301|gb|ACU94435.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM 15641] Length = 475 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 33/226 (14%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA + L T IT+S A+ S + ++G TM L ALK L+ Sbjct: 96 ASITKVMTAVTAIDSVP-----LDTTITVSSQAARIGESTAALQEGDTMPLSEALKALLW 150 Query: 114 KSANDIAVAIAESL---------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 S ND A AIAES+ + FV MN S +LG++ + + N HG Sbjct: 151 PSGNDAAWAIAESIGGMMLTSSNKDASDSSACVQAFVDAMNAKSADLGMNDSIWSNPHG- 209 Query: 159 VQHGHY-----TTARDMA-ILSWRIKTDFPQYMHYFQ------IKGLEIKGKKYPNTNWA 206 + G + +TARD++ ++ + + D + + ++ E +T+ Sbjct: 210 LDDGSWSGDFGSTARDISKLIEYAMSKDAIRSITSTDGGTCKVLRNGEQVSLSLDSTDEL 269 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G++ G G+KTGFT ++G + D +L +V+L + R Sbjct: 270 LGSYEGTIGVKTGFTDSAGECFAGAVETSDITLYSVVLDSTSEKQR 315 >gi|302874416|ref|YP_003843049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] gi|307690978|ref|ZP_07633424.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium cellulovorans 743B] gi|302577273|gb|ADL51285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] Length = 454 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 32/239 (13%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-------EKKAMLTTPITI 82 Y +D +TG VI PD PAS+TK+MTA +V K + A + P +I Sbjct: 36 YAITVDASTGEVIYAKDPDARVYPASVTKVMTAILVEKLFKIDDMVTYTQTAKIQDPSSI 95 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL----CKTEKKFVQHM 138 + + + P G + + ALK +++ SAND+ +A + + K+FV M Sbjct: 96 NMDIVDIP-------IGQQIPVSAALKAMMLYSANDMTELVATNYPTKGSDSNKEFVALM 148 Query: 139 NNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQI------ 190 N+ +K LG+++T+F+ +G+ + H TTA D++I++ R +P +Q+ Sbjct: 149 NSEAKVLGMNSTNFVTTNGLDDNTNEHLTTAYDLSIMA-REAAKYPNIRAVWQLPNPTNI 207 Query: 191 --KGLEIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 GL PN GT G+K+GFT +G +++ + + ++ ++L Sbjct: 208 DFPGLTSVQVGNPNKFLQQGTDFYDPSCVGVKSGFTDKAGRCLLSVFERNGRQIVGIVL 266 >gi|42518607|ref|NP_964537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC 533] gi|41582892|gb|AAS08503.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC 533] Length = 308 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 23/233 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TKL+T Y+ +KEKK T +T ++ S ++ + G T+ Sbjct: 76 ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYD 135 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHY 164 ++KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ + G Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195 Query: 165 TT------ARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYPNTNWAVGTFL 211 TT A DMAI++ ++ T++P+ ++ YFQ + K ++ TF Sbjct: 196 TTVENKMSANDMAIVARKLITNYPEILNTTKLARAYFQNTLMTNSNKMLNGLSYYDSTF- 254 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G + + + +I VILGA + N R + LLS F Sbjct: 255 PVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCF 307 >gi|221635723|ref|YP_002523599.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159] gi|221158037|gb|ACM07155.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159] Length = 323 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 22/234 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T ++ E P PAS KL+TA L ++ + P A E S Sbjct: 74 VVDLTTDRILLERASRTPLPPASTLKLLTALTAVEILSFEEIVTVQPEDTVDPARE---S 130 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK---------TEKKFVQHMNNTSK 143 G T+T+ + L L++ S ND A A+A S + ++F+ M ++ Sbjct: 131 AMGLDVGDTITVHDLLLGLLLPSGNDAARALARSAGERLAGPPDRPPRERFLVAMQEKAR 190 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKK-- 199 LGLS T + G G T+ARD+ L+ R D P+ ++ +++ G K Sbjct: 191 ELGLSETVVLTPDGDDVPGQTTSARDLLQLA-RATLDHPELAALVALRTAQVRVGGPKAR 249 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDR 249 NTN +G G G+KTG T +G +VA+ D ++ +A++LG+ DR Sbjct: 250 VLELRNTNELLGQH-GVIGIKTGTTPEAGQCLVAAWRTSDGRTFVAIVLGSQDR 302 >gi|160892713|ref|ZP_02073503.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50] gi|156865754|gb|EDO59185.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50] Length = 451 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 44/294 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD G V+ + + AS TK++T + + ++ +S A++ P Sbjct: 90 LLDGKNGRVLYDKAGEEVRANASTTKILTCILALEYGDPDDIVI-----VSSYAAKMPDV 144 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G L + L L+++S ND AVAIAE + + + F MN + +G + THF Sbjct: 145 QLNIREGEEYRLKDLLYSLMLESHNDSAVAIAEYIGGSVEAFADLMNRKAIEVGCTNTHF 204 Query: 153 MNAHGV---VQHG-HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + +G+ ++G H TTA D+A I+ + I+ + P+ + I T A Sbjct: 205 ITPNGLDAKDEYGIHGTTAEDLARIMRYCIR-ESPKREQFLAI------------TRTAT 251 Query: 208 GTFLGADGMKTGFTCA---SGFNIVASAIQGDQSLIA----VILGALDRNTRNKVSASLL 260 +F G ++ F+C+ + N++ A+ G +GAL+R+ + + A LL Sbjct: 252 YSFTNVGGTRS-FSCSNHNAFLNMMDGALTGKTGFTGSAGYCYVGALERDGKILIVA-LL 309 Query: 261 SMGF-----YNKTDRKKI-NYIIKDFYQQNLS------NEVPNISEEVCTTQKE 302 G+ Y D KK+ NY + ++ + ++ N++P +S+ V T KE Sbjct: 310 GCGWPGNKTYKWADTKKLMNYGLANYQEHVITDDILQKNKIPVLSDSVYGTIKE 363 >gi|300362213|ref|ZP_07058390.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri JV-V03] gi|300354832|gb|EFJ70703.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri JV-V03] Length = 317 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 21/232 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPP-SNSTFKKGSTMTLDNALK 109 AS+TKL+TAY+ +KEKK T ++ ++ N S P + G T+ Sbjct: 85 ASMTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINLSSNPDYAGVPLSLGQKYTVRELYD 144 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHY 164 ++KSAN+ A +A ++ +E F+ M + L + G+ + G Sbjct: 145 AALIKSANNAARMLAIAVSGSETNFLNQMRQQANKWKLHNVKLVTVDGLPEKNKNFLGMT 204 Query: 165 TT------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF------LG 212 TT A DMAI++ ++ TD+P+ + ++ + + N+N + Sbjct: 205 TTIENKMSANDMAIIARKLVTDYPEVLSTTKVAKSDFRNTLMTNSNKMLSGLSDYDPNYP 264 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G + + ++ +I VILGA + N R + LL+ F Sbjct: 265 VDGLKTGTTDGAGACFTCTMDKNNKRVITVILGAQNDNERFSETKKLLNYSF 316 >gi|262164415|ref|ZP_06032153.1| murein-DD-endopeptidase [Vibrio mimicus VM223] gi|262026795|gb|EEY45462.1| murein-DD-endopeptidase [Vibrio mimicus VM223] Length = 317 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 ++D T VI + PD AS+TKLMTA V L K M T PITI K A E Sbjct: 53 VIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVT---LDAKLPMDTKLPITI-KEAKEMKG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +S + GS ++ + L L ++ S N A ++A K F++ MNN +K LG+ T Sbjct: 109 VHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMKNTR 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP-------- 201 F+ G+ + + ++ARD+ +L + +P + + K + +Y Sbjct: 169 FVEPTGLSEK-NVSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNR 226 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 LVFNDNWKI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLS 273 >gi|331002378|ref|ZP_08325896.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410194|gb|EGG89628.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon 107 str. F0167] Length = 483 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 48/291 (16%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---E 88 L+D ++G V+ +N +H + PAS+TK++TA +V + L +T SKNA E Sbjct: 46 LMDADSGAVLYGKNIHEH-YYPASITKILTALIVV-----ENCNLDDIVTFSKNAVYNVE 99 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S++ G T+T+ + L ++++SAN+ A A+AE + ++F MN + NLG + Sbjct: 100 AGSSSAGLDVGDTLTVRDCLYAMLLQSANEAANALAEHTAGSIEEFANMMNQKASNLGCT 159 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSW-----------------------RIKTDFPQYM 185 +HF+N G+ HYT+A D A++S R+ T Y Sbjct: 160 DSHFVNPSGLNSPDHYTSAYDYALISRAAFMNPIVTEIDSATYYNLPPSKRVPTGQTIYN 219 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 H+ ++ + G Y N A KTG+T +G +V A LI V+L Sbjct: 220 HHSMLR--KTSGNYYQN----------AICGKTGYTTLAGNTLVTYARNDQIGLITVVLN 267 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 T + LL+ GF N + K I + N+S +P+ +E + Sbjct: 268 G--NKTHYTDTQELLNFGFANFKNIKLSTADITTKFSSNIS-MIPDFNEYI 315 >gi|229829484|ref|ZP_04455553.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM 14600] gi|229791915|gb|EEP28029.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM 14600] Length = 508 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 46/288 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D ++G ++ PAS TKLMTA + K L +T S +A +E Sbjct: 59 LMDLDSGEILYGKEDQTARYPASTTKLMTALLALEHSK-----LDETVTFSSDAVFKNET 113 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNL 145 S+ G M+++ L +++ SAN+ A AIAE + F+Q MN+ +K L Sbjct: 114 NSSHIARDVGEQMSMEQTLYGVLLASANECAYAIAEHVGADMGGDYNTFIQAMNDRAKEL 173 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G THF+N+ G+ HYT A D+A+++ Y + K + + + P TN Sbjct: 174 GCVNTHFVNSSGLHDDQHYTCAYDLALIAREA------YQNETLRKMVGTRRYEIPPTNK 227 Query: 206 -----------------AVGTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 FL G G KTG+T + ++V + + L+ V + A Sbjct: 228 HAEPTPLNNTHAMLSANKTSKFLYDGCQGGKTGYTDEARHSLVTYVERDGRKLVCVSMCA 287 Query: 247 LDRNTRNKVSASLLSMGFYN--------KTDRKKINYIIKDFYQQNLS 286 + N K + +L+ G N +T + K++ IK +Q LS Sbjct: 288 -EGNDSYKDTIALMDWGLANFHKVSLEDETLQSKVDEAIKASGRQGLS 334 >gi|254302479|ref|ZP_04969837.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322671|gb|EDK87921.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 426 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L+ + ISKN +Y S K Sbjct: 181 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLSDSVRISKNPLKYGGSGIPLKA 240 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN K LGL + + Sbjct: 241 GQIFILEDLIKASAVYSANNATYAIAEYVGNGSVFGFVAKMNRKLKELGLQNEIRYHTPA 300 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY------PNTNW 205 G+ Q TAR + +++ + +Y Y +I G++ K K Y N N Sbjct: 301 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIK-KTKIYNEKISIRNRNH 355 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI ++ D +I V++G TR+ + S+L + Sbjct: 356 LIGEN-GVYGIKTGFHKEAKYNIAVASKFEDTDVIIVVMGGETYKTRDGIVLSVLDI 411 >gi|170760715|ref|YP_001786794.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407704|gb|ACA56115.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 422 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 26/259 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L+I + + SN+F + ++N P +D TG +I D PAS TK Sbjct: 11 LLIFILTLTSNVF---AAGDSNTEPPAIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +TA ++ + + T S+ + G T+ +N + L++ S ND Sbjct: 68 YLTALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS---- 174 +A I ++L K F MN + L L THF+ +G+ HYTTA D++++S Sbjct: 128 VAYMIGDALAGNNKNFENMMNKKIQELDLKNTHFVTPNGLHNPNHYTTAYDLSVISRAAL 187 Query: 175 ---WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM---KTGFTCASGFNI 228 W ++ + KG ++ N+N LG DG KTG+T A+G + Sbjct: 188 KNPWVYQSSNKKESSIVTSKGTKM---TIENSN----KLLGKDGCVAGKTGYTDAAGRCL 240 Query: 229 VASAIQGDQSLIAVILGAL 247 V + + ++ +++G++ Sbjct: 241 VTLFNRDGRKILGIVMGSV 259 >gi|56962947|ref|YP_174674.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56909186|dbj|BAD63713.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 304 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 1/157 (0%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 FPF E PY +++ TG V+ E + PASLTK+MT V +++ A+ Sbjct: 38 FPFFRTDEYVS-PYIYVMERETGRVVYEENAEAKVYPASLTKIMTTIVALEQIEDLSAIA 96 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +T S + F +T + L ++ S + A ++A + + FVQ Sbjct: 97 PVDVTTYHEMVASNASMAGFFGREDVTYRDLLYGTMLTSGGEAANSLAVHVGGNVENFVQ 156 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 MN+ + LGL+ THF N G+ YTTA D+A L Sbjct: 157 MMNDKAAELGLNGTHFTNPEGLHNEKQYTTASDIAKL 193 >gi|145535902|ref|XP_001453684.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421406|emb|CAK86287.1| unnamed protein product [Paramecium tetraurelia] Length = 395 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 16/211 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAML-TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MT ++ F+ L T T+ + A +++ + G + L + L L+ Sbjct: 176 ASITKIMTCFLSLKFVSLISLDLDNTYFTVPEAAENVGGTSAQLQTGDQLNLRDLLYGLM 235 Query: 113 VKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND AV + + +T F+ MN+ +K GL +T +MN HG+ +Y++A D+ Sbjct: 236 LPSGNDAAVTLKHNFEQTTGINFIDEMNSCAKEFGLKSTQYMNPHGLYHKFNYSSALDIG 295 Query: 172 ILSWR----------IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 IL ++ +KT Y K IK + NTN + G G+KTG T Sbjct: 296 ILCFQALQNEHFANIVKTKI--YFSEIIDKFGNIKEILWENTNKLLDN--GFQGVKTGQT 351 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + + S I V+L + R Sbjct: 352 KEAGPCVVEYYLDNNNSYIIVLLNCKSTDYR 382 >gi|295109905|emb|CBL23858.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 412 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 18/226 (7%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D ++G ++ E + P AS TK++T L + + +S NA+ P Sbjct: 48 VLMDADSGRILYEKEGEMPRPNASTTKVLTC-----ILALENGDGDDYVQVSANAASQPQ 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +KG L++ L L+++S ND AVAIAE + + K F MN ++ +G + TH Sbjct: 103 VKLGLQKGEQYYLEDLLYSLLLQSHNDSAVAIAEHIGGSVKGFSDLMNAKARKIGCTDTH 162 Query: 152 FMNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEI----KGKKYP- 201 F+ +G+ H+TTA D+A I+ + IK ++ Q K K + + Sbjct: 163 FITPNGLDAEDSSGTHHTTASDLARIMRYAIKNKV--FLKIAQTKEYSFSDLSKKRTFSV 220 Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 NTN G KTGFT +G+ V + + D++ I +L A Sbjct: 221 HNTNALFSMTDGVLAGKTGFTGDAGYCYVCAVQKDDRTFIIALLAA 266 >gi|258622600|ref|ZP_05717622.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573] gi|258585300|gb|EEW10027.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573] Length = 317 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 ++D T VI + PD AS+TKLMTA V L K M T PITI K A E Sbjct: 53 VIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVT---LDAKLPMDTKLPITI-KEAKEMKG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +S + GS ++ + L L ++ S N A ++A K F++ MNN +K LG+ T Sbjct: 109 IHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMKNTR 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP-------- 201 F+ G+ + + ++ARD+ +L + +P + + K + +Y Sbjct: 169 FVEPTGLSEK-NVSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNR 226 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 LVFNDNWKI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLS 273 >gi|328958772|ref|YP_004376158.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4] gi|328675096|gb|AEB31142.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4] Length = 439 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 37/241 (15%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSN 93 TG V+ D AS+TK++T Y++ +K + IS+ A Y SN Sbjct: 51 TGKVLLNQNGDEKLGIASMTKMITEYILLETIKNGDLAWDDQVNISEYAHNISQNYELSN 110 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + T +++ + + + SAN +A+AE + EK FV M+ ++ G++ Sbjct: 111 VPLRIDDTYSVEELYQAMAIYSANGATIALAEHIAGDEKSFVDMMHEKVESWGITNYELY 170 Query: 154 NAHGV----VQHGHY----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 N G+ +Q Y TAR+M+I++ R+ DFP+ + K I KK Sbjct: 171 NTTGLSNSDLQGNIYPGSTEDSENSMTAREMSIVAQRLLVDFPEVL-----KTSSISEKK 225 Query: 200 Y----------PNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + N NW + + DG+KTG T +G ++ +A + +I +++ Sbjct: 226 FREGTSDEISMQNFNWMLPGLIYERENVDGLKTGTTDFAGASMTGTAEEEGMRVITIVMN 285 Query: 246 A 246 A Sbjct: 286 A 286 >gi|325661133|ref|ZP_08149760.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472640|gb|EGC75851.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium 4_1_37FAA] Length = 404 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 22/262 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ I +L P + E +L L+D + G V+ E AS TK Sbjct: 3 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + ++ LT + +S+NA+ P + + L + L L+++S ND Sbjct: 63 IMTCILAL-----EEGNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 117 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYTTARDMA-IL 173 AVAIAE + + + F MN +K +G T+F+ +G+ + H TTA D+A I+ Sbjct: 118 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDKGEHSTTAEDLARIM 177 Query: 174 SWRIKTDFPQYMHYFQI--KG----LEIKGKK---YPNTNWAVGTFLGADGMKTGFTCAS 224 S+ I P+ + I KG +++ + N N + GA KTGFT + Sbjct: 178 SYCILKS-PKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKA 236 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 G+ V + ++ + +LG Sbjct: 237 GYCYVGALESRGRTFVVALLGC 258 >gi|313890335|ref|ZP_07823967.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] gi|313121321|gb|EFR44428.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] Length = 412 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 25/264 (9%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 LV + + +L P +A+ KLP + + +TG ++ E ASL+K++T Sbjct: 4 LVFLILPLLFCFLPKTILADDYKLPAKSGIAFEVSTGKILYEKNAKKTLPIASLSKILTT 63 Query: 63 YVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 Y+V+ ++ TP+ IS E Y SN T++ L ++V +AN Sbjct: 64 YLVYKEVQSGNLSWDTPVKISNYPYELTTNYSISNVPLD-ARQYTVEELLTAMLVTNANS 122 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYT----------- 165 A+A+AE + TE FV M + + +NA G+ Q G++ Sbjct: 123 PAIALAEKIAGTEPLFVDKMKKQLQEWKIHKADLVNASGLSNEQLGNHIYPNSQKDAENK 182 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGF 220 +A D+AI++ + D+PQ + + +G + + N+ + GA+G+ F Sbjct: 183 MSALDLAIVTRHLLLDYPQVLELTKKPAATFRGDQIFSYNFLLEGMPNHRKGANGLFVAF 242 Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244 + +G +++ S+ + S++++I+ Sbjct: 243 SENNGASLITSSTENKMSVVSIII 266 >gi|254518434|ref|ZP_05130490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] gi|226912183|gb|EEH97384.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] Length = 429 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-KLPYY-----TLLDTNTGHVIAENYPDHPWNPA 54 ++ V +++++L+ +S ETN + P +D NTG +I D +PA Sbjct: 7 LKSLAVALSISLLAPFANKVSAQETNIQTPEIIGEAAVTMDINTGEIIYSKNADLKLSPA 66 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TKLMTA ++F+ K K LT T+ K + G ++ ++ +K +++ Sbjct: 67 STTKLMTA-LLFAENKSKSDTLTFSDTVVKVTETSLNNYKAINPGDKISAEDTMKAVMIF 125 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 SAND A +AES+ T F+ MN+ + LGL THF+N G+ Sbjct: 126 SANDTAYLMAESVGGTVDNFINMMNDKAAELGLKNTHFVNPSGL 169 >gi|331268991|ref|YP_004395483.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] gi|329125541|gb|AEB75486.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] Length = 444 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 37/268 (13%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG VI A++ P PAS TKL+TA ++ + T +T + AS+ P Sbjct: 39 VVDAKTGEVIYAKDVDTSPMYPASTTKLLTALLL-----AENKQPTDILTYTDGASKQPE 93 Query: 92 SN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 K G M+ D+A+K L++ SANDIA IA+++ + F + MN+ K L Sbjct: 94 YTLRSFLKGQLKVGDKMSADDAMKGLLLHSANDIAYMIADNVAGNTENFAKMMNDKIKKL 153 Query: 146 GLSATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 GL+ THF+ +G + +G HYT+A D++++ Y + + K + +K K Sbjct: 154 GLTHTHFVTPNG-LDNGITDHYTSAYDLSVIGR------AAYENEWVRKTMNLKKDKIEL 206 Query: 203 TNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 TN +G LG + + F +G NI + AV +G T +K Sbjct: 207 TNGVLGYPENRNKLLGKT-LDSNFNSKTGINIKDVPVSD-----AVCIGGKTGYT-SKAG 259 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQN 284 L++M +NK R I ++K Y +N Sbjct: 260 RCLVAM--FNKDGRILIGVVMKSAYDKN 285 >gi|170755178|ref|YP_001781058.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] gi|169120390|gb|ACA44226.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] Length = 424 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I D PAS TK +TA + + K P T + + N Sbjct: 43 IDVETGEIIYAKNIDKRMYPASTTKYLTALL---LAENKGKNDNIPYTATAKSQPQYSLN 99 Query: 94 STFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T+ +N + L++ S ND+A I ++L K F MN + L L T Sbjct: 100 INLHPIDIGETIKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNT 159 Query: 151 HFMNAHGVVQHGHYTTARDMAILS-------WRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 HF+ +G+ HYTTA D++++S W ++ + KG ++ N+ Sbjct: 160 HFVTPNGLHNPNHYTTAYDLSVISRAALKNTWVYQSSNKKESSIVTSKGTKM---TIENS 216 Query: 204 NWAVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 N LG DG KTG+T A+G +V + + ++ V++G++ Sbjct: 217 N----KLLGKDGCVAGKTGYTDAAGRCLVTLFNRDGRKILGVVMGSV 259 >gi|313903983|ref|ZP_07837363.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium cellulosolvens 6] gi|313471132|gb|EFR66454.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium cellulosolvens 6] Length = 344 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 8/135 (5%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKAMLTTPITISKNASEYPPSNSTFKK 98 V AE + + PASLTK+MTA + L+ M + A S Sbjct: 109 VCAEGIYERIY-PASLTKIMTALLCLESGDLERNVVMTEEDFNLGDGAQV-----SQLDV 162 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G +++L + L L++V S+ND + A+A ++ + FV MN +++LG++ THF N HG+ Sbjct: 163 GDSVSLGDLLNLVLVYSSNDASKAVARTVGGSVDNFVNMMNQKAQSLGMTGTHFANPHGL 222 Query: 159 VQHGHYTTARDMAIL 173 + HYTT D+ ++ Sbjct: 223 HEENHYTTLYDIYLM 237 >gi|258625555|ref|ZP_05720443.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603] gi|258582148|gb|EEW07009.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603] Length = 317 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 ++D T VI + PD AS+TKLMTA V L K M T PITI K A E Sbjct: 53 VIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVT---LDAKLPMDTKLPITI-KEAKEMKG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +S + GS ++ + L L ++ S N A ++A K F++ MNN +K LG+ T Sbjct: 109 IHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMKNTR 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP-------- 201 F+ G+ + + ++ARD+ +L + +P + + K + +Y Sbjct: 169 FVEPTGLSEK-NVSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNR 226 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 LVFNDNWKI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLS 273 >gi|239623520|ref|ZP_04666551.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521551|gb|EEQ61417.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 427 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 50/287 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ D AS TK+MT + L +T S A+ P Sbjct: 53 LMDGSSGRILYGKGQDIIRPMASTTKIMTCILALEL-----GNLDDKVTASSYAASQPKV 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G L++ L L+++S ND AV IAE++ + + F MN ++ LG T+F Sbjct: 108 HLGVRSGEEYRLEDLLYALMLESYNDAAVMIAENIGGSVEDFAALMNQKAEELGCRDTYF 167 Query: 153 MNAHGV---------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------IKG 197 + +G+ V+H H TTA D+A + + P+ + I + G Sbjct: 168 ITPNGLDGVKKDKDGVEHIHSTTAADLAAIMRYCVMESPKKEEFLSITRTQNHTFTDSSG 227 Query: 198 KK-YP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 ++ Y N N + G KTGFT +G++ V GA++ + R Sbjct: 228 RRSYSCFNHNAFLNMMEGVLSGKTGFTGGAGYSYV---------------GAMENDGRTY 272 Query: 255 VSASLLSMGF-----YNKTDRKKI------NYIIKDFYQQNLSNEVP 290 V A LL G+ Y D +K+ ++ +KD +++ + ++P Sbjct: 273 VIA-LLGCGWPPHKTYKWADARKLYTYGLEHFQLKDVFREEVLPDIP 318 >gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium matruchotii ATCC 14266] gi|305660391|gb|EFM49888.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium matruchotii ATCC 14266] Length = 489 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 29/228 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G V+ P + PAS+ K++ A V + L K +T+S ++ Sbjct: 169 WLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINNLDLNKV-----VTVSAESANQE 223 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T+ + L L+++S ND A A+A+ L E+ + +N + NLG + T Sbjct: 224 GSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALTR-VNALAHNLGATDT 282 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYP----NT 203 + + G+ G T+ARDMAI +W+ T + QI G + K+P N Sbjct: 283 YAASYSGLDAPGMSTSARDMAIFYHYAWKNPT-------FAQIVGTDE--YKFPGYQDNP 333 Query: 204 NWAVGTFLG-----ADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 W +G G DG+ KTGFT + V + G++ + AVIL Sbjct: 334 GWPIGNDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVIL 381 >gi|312897437|ref|ZP_07756861.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera micronuciformis F0359] gi|310621498|gb|EFQ05034.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera micronuciformis F0359] Length = 326 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 25/249 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG V+ D P T +MTA + + +L + S + ++ Sbjct: 38 LMDAQTGEVLYSKNGDEKLYPGGTTMIMTALL---GAEAGDTVLDGAVHFSDDVTKLDRD 94 Query: 93 NSTFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + +TL NAL ++ + D A+ A ++ + FV MN+ + +G + T Sbjct: 95 VAVLGISADHPVTLRNALTAMMTYTGCDAALDTAVTVAPSVADFVHMMNDKAVAIGATNT 154 Query: 151 HFMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHYFQIKGLEIKGKK 199 HF N HG+ H +TA+D+A + S+ +T F M Y E+ Sbjct: 155 HFTNPHGLPDANHVSTAKDLAKIAVYAMQNQTFKSFTGRTSF--VMPYTNGGSQEV---- 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + + + GA+G+KTG T G +VASA +GD++ + IL + +R+ K+ L Sbjct: 209 FSMNEFLNSGYKGANGIKTGATDYGGATLVASATRGDKTYVVSILNSDNRSGDAKL---L 265 Query: 260 LSMGFYNKT 268 + F T Sbjct: 266 MDFAFAETT 274 >gi|302524153|ref|ZP_07276495.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4] gi|302433048|gb|EFL04864.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4] Length = 409 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 18/268 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +TG V+A P PASL K + A VV + LK ++ ++ T K +E Sbjct: 99 WVLQDLDTGAVVAAKDPHARERPASLIKTLLALVVVTELKPEQVIVPT-----KEDAEQE 153 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+D L L++ S ND+A A A +L + V+ MN + +G + T Sbjct: 154 CTCVGITAGGHYTVDQLLHGLLMHSGNDVAHAFATALGGVDAAVVK-MNALAARIGATDT 212 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYP----NTN 204 G+ G T+A D++++ + P++ K I K P N N Sbjct: 213 RAATPSGLDGPGMSTSAYDLSLV-FHYAMKQPEFAKVVATKNFTIPAVDGKPPIPVFNDN 271 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLLSMG 263 +G + G G KTGFT + V A + L V++ A R T+ +A LL G Sbjct: 272 KLLGVYPGFLGGKTGFTDDARHTYVGGAERDGHRLAIVMMRAEQRPTKVVDQAAKLLDYG 331 Query: 264 F-YNKTDRKKINYIIKDFYQQNLSNEVP 290 F K+ + + I YQ ++ P Sbjct: 332 FALEKSGAQPVGQIA---YQPLSADAAP 356 >gi|239942599|ref|ZP_04694536.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239989058|ref|ZP_04709722.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 11379] gi|291446061|ref|ZP_06585451.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|291349008|gb|EFE75912.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 299 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 25/252 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 L++ TG + D S TK+MTA VV S +K L + +TI K S+Y Sbjct: 51 LMNDGTGKTLFTKSADTRRATGSTTKIMTALVVLS---QKNVNLKSKVTIQKAYSDYIVS 107 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN+T+ Sbjct: 108 KNASSARLIVGDKVTVGQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNSTA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIK----- 196 K+L L T F + G+ +Y+T RD+ I S +K + + K + K Sbjct: 168 KSLKLKNTRFDSFDGIGNGNNYSTPRDLTKIASQAMKNS--TFRSVVKTKSTKQKVTTKS 225 Query: 197 -GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G +Y NTN +G++ GA G+KTG + + +V +A + +++I +L + R Sbjct: 226 GGYRYMSWTNTNKLLGSYSGATGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSTSEANR 285 Query: 253 NKVSASLLSMGF 264 + ++ GF Sbjct: 286 TADAKKMMDYGF 297 >gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii ATCC 33806] gi|224946529|gb|EEG27738.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii ATCC 33806] Length = 498 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 29/228 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G V+ P + PAS+ K++ A V + L K +T+S ++ Sbjct: 178 WLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINNLDLNKV-----VTVSAESANQE 232 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T+ + L L+++S ND A A+A+ L E+ + +N + NLG + T Sbjct: 233 GSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALAR-VNALAHNLGATDT 291 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYP----NT 203 + + G+ G T+ARDMAI +W+ T + QI G + K+P N Sbjct: 292 YAASYSGLDAPGMSTSARDMAIFYHYAWKNPT-------FAQIVGTDE--YKFPGYQDNP 342 Query: 204 NWAVGTFLG-----ADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 W +G G DG+ KTGFT + V + G++ + AVIL Sbjct: 343 GWPIGNDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVIL 390 >gi|257125213|ref|YP_003163327.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis C-1013-b] gi|257049152|gb|ACV38336.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis C-1013-b] Length = 485 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 11/229 (4%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T G ++ + ASLTK+M V + A + + + + S Sbjct: 142 TTDGKILKDKMSRQQHPIASLTKVMNILVALDQIDRGNAKIDDKVCFTPDTVNMGGSWLN 201 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMN 154 K G TL + L+ I+ SAN+ A +A+ + K FV+ MN +K LG++ TH+ Sbjct: 202 AKAGDCYTLKDLLRAEIIYSANNAAYMVAKHIGKGNLDNFVKLMNQKAKELGMNDTHYYT 261 Query: 155 AHGV----VQHGHYT-TARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK--YPNTNW 205 G+ G T TA DM +L R D +M ++ +G+ Y N N Sbjct: 262 PAGLPTSMTNKGMDTSTAYDMYLLGRRAIRDERLKAWMKESELVLQNSEGEDVIYNNRNH 321 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + F G G+KTGF +G+N++ S+ G+ +I+V LG + R K Sbjct: 322 LLNKF-GIYGLKTGFHVQAGYNMIVSSKIGNLEIISVTLGNKSDDARTK 369 >gi|153938979|ref|YP_001390767.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|152934875|gb|ABS40373.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|295318839|gb|ADF99216.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. 230613] Length = 424 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 17/224 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I D PAS TK +TA ++ + + T S+ + Sbjct: 43 IDVETGEIIYAKNIDKRMYPASTTKYLTALLLAENKGKNDNIPYTATAKSQPQYSLNINL 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 G T+ +N + L++ S ND+A I ++L K F MN + L L THF+ Sbjct: 103 HPIDIGETIKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFV 162 Query: 154 NAHGVVQHGHYTTARDMAILS-------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 +G+ HYTTA D++++S W ++ + KG ++ N+N Sbjct: 163 TPNGLHNPNHYTTAYDLSVISRAALKNPWVYQSSNKKESSIVTSKGTKM---TIENSN-- 217 Query: 207 VGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 LG DG KTG+T A+G +V + + ++ V++G++ Sbjct: 218 --KLLGKDGCVAGKTGYTDAAGRCLVTLFNRDGRKILGVVMGSV 259 >gi|167838920|ref|ZP_02465697.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis MSMB43] Length = 349 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L PI ++ + + Sbjct: 102 MVDQHTGEALFDRNSQSVAPIASVTKLMTAMVVL----DSKAPLDEPIEVTDDDRDQDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST+T D+ L + ++ S N A A++ FV MN +++LG+ TH Sbjct: 158 TGSRLAIGSTLTRDDMLHIALMASENRAAAALSRYYPGGRDAFVDAMNQKARSLGMVDTH 217 Query: 152 FMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + +TARD+ A + + + + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSTARDLVKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNIL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W +G KTG+ SG +V + ++ V+L + R++ +A L Sbjct: 275 LRDDDWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARL 328 Query: 260 LSM 262 +M Sbjct: 329 RTM 331 >gi|313114789|ref|ZP_07800289.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622844|gb|EFQ06299.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] Length = 451 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NA 86 Y ++D +TG V+A+ + +PAS+TK+MT + + K + +T++ + Sbjct: 40 YCIIDADTGLVLAQQNMNEELHPASITKVMT--LGLACEKAQGNWDDIKLTVTHEDVYSL 97 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNL 145 + S+ ++G + L +AL ++ SAND A +AE + + T V MN + L Sbjct: 98 AGTDSSHIALREGEEVPLTDALYATMMASANDGANLLAEYVGEGTIADGVAKMNARVEEL 157 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIK 178 GL+ THF N HG+ HYT+ DMA IL W ++ Sbjct: 158 GLAHTHFANPHGISDEDHYTSCYDMAQILRWALE 191 >gi|303234621|ref|ZP_07321255.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna BVS033A4] gi|302494284|gb|EFL54056.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna BVS033A4] Length = 289 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 18/136 (13%) Query: 47 PDHPWNPASLTKLMTAYVVFSFLKE--KKAMLTTPIT-------ISKNASEYPPSNSTFK 97 PD PASLTK+MT Y +++ KKA PI + +NAS + F Sbjct: 56 PDKKVYPASLTKMMTVYTALGKIEDFDKKA----PIDKKSYQKLVKQNASM-----AGFY 106 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 T ++ L ++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G Sbjct: 107 GNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEG 166 Query: 158 VVQHGHYTTARDMAIL 173 + + HY++A+DMA L Sbjct: 167 MDEDDHYSSAKDMAFL 182 >gi|302380445|ref|ZP_07268913.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ACS-171-V-Col3] gi|302311756|gb|EFK93769.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ACS-171-V-Col3] Length = 289 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 18/136 (13%) Query: 47 PDHPWNPASLTKLMTAYVVFSFLKE--KKAMLTTPIT-------ISKNASEYPPSNSTFK 97 PD PASLTK+MT Y +++ KKA PI + +NAS + F Sbjct: 56 PDKKVYPASLTKMMTVYTALGKIEDFDKKA----PIDKKSYQKLVKQNASM-----AGFY 106 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 T ++ L ++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G Sbjct: 107 GNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEG 166 Query: 158 VVQHGHYTTARDMAIL 173 + + HY++A+DMA L Sbjct: 167 MDEDDHYSSAKDMAFL 182 >gi|160931610|ref|ZP_02079005.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753] gi|156869481|gb|EDO62853.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753] Length = 381 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 14/238 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+ + V+ E + AS TK+MTA + E + I+ S Sbjct: 44 LMTADNSTVLYEKAAEEKLPMASTTKIMTALLTL----EAAQAEDRQVKITDEMVRVEGS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + K G+ +TL + +++ S ND A A A ++ + ++F + MN +K +G+ T+F Sbjct: 100 SMGLKPGNVVTLTALAQGMLLCSGNDAANAAAIAIAGSTEEFAKLMNQRAKQIGMKNTNF 159 Query: 153 MNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + G+ HYTTA DMA+L R + Q Q ++K + N N Sbjct: 160 VTPSGLDDENHYTTAYDMALLGACAMENQRFREIASQKSMQVQFVEPDMK-YTFGNHNRL 218 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G G+KTGFT SG +V+ A + L+AV L A D +K ++L GF Sbjct: 219 LTAYEGCIGVKTGFTKKSGRCLVSCAERDGVRLVAVTLNAPDDWNDHK---AMLDYGF 273 >gi|302874922|ref|YP_003843555.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] gi|307690459|ref|ZP_07632905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans 743B] gi|302577779|gb|ADL51791.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulovorans 743B] Length = 349 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 8/214 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D + V+ E AS TK+MT+ V ++ L ITISK A+ S Sbjct: 41 MDVKSKRVLYEKNSVSLIPMASTTKIMTSLVALTY-----GNLDQEITISKKAAAIRGST 95 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G +TL L L+++S ND A+AIAE + F+ MN + +G + +HF Sbjct: 96 VNYMAGEKVTLRELLYGLMLRSGNDAAIAIAEGIAGDVDSFLVLMNEYANLIGATNSHFE 155 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQI-KGLEIKGKKYPNTNWAVGTF 210 + HG+ + HYTT D+AI++ + + F + + I KG + Y N N + Sbjct: 156 SPHGLDSNQHYTTTYDLAIITSKAMENRTFREIVGCRSIEKGASGFTRGYSNINKILFLH 215 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 A G+KTG+T +G +V+S ++ ++L Sbjct: 216 GDATGVKTGYTGQAGKCLVSSFNYDGNDIVVIVL 249 >gi|229087522|ref|ZP_04219654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228695769|gb|EEL48622.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 273 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 17/243 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87 Y +D +TG ++ PAS+ K+MT ++ +K+ + ITI++NA + Sbjct: 35 YAITIDADTGEILYGKREQERSYPASIAKMMTTLLLLENVKKDE-----EITITENAIKT 89 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G + D ALKL+++ SA+ ++ +IAE + +++ F++ MN +K LG Sbjct: 90 ESQSKKIKLRAGEKLKRDEALKLMLIISADPVSESIAEHIAGSKEAFIKMMNARAKELGT 149 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPNTNW 205 F NA G G+ + D+AI++ + +P + Y L + N+ Sbjct: 150 KHATFKNASGADALGNKVSPYDIAIIT-KEALKYPIVLDYMNTTRTTLHTSMRSPKIANY 208 Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 A G K+G + + +V + +I V+L + TRN++ M Sbjct: 209 GREELYDDPYAIGSKSGLSALGNYTVVTVNEMNGKRVINVVLSS----TRNQLYPDTKKM 264 Query: 263 GFY 265 Y Sbjct: 265 AHY 267 >gi|291544371|emb|CBL17480.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13] Length = 378 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 12/224 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L++ +TG V+ D AS TK+MT + L + L + A Sbjct: 35 YVLMEADTGKVLLSKNGDEKRPIASTTKIMT-----TLLCLESGGLDDWFVVDPEAIRVE 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ ++G +T +++ S ND A A A L + +F + MN + +G++ T Sbjct: 90 GSSMGLQEGDVVTKRMLCYGMLLPSGNDAANATAVRLAGSIPEFAKLMNARAARIGMTHT 149 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTN 204 F+ G+ GH + RDM +L+ R P + E+ P NTN Sbjct: 150 CFVTPSGLDAEGHGASVRDMGLLA-RTAMQNPDFRAICSQSRAEVCFGNPPYNRWLKNTN 208 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G G+KTGFT A+G +V+ + SL+ V L A D Sbjct: 209 KLLTMYEGVVGVKTGFTDAAGRCLVSFCERDGVSLLCVTLHAKD 252 >gi|253579420|ref|ZP_04856690.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849518|gb|EES77478.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 306 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 13/236 (5%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L+ G ++ E + PAS+TK+MT + + +T + E Sbjct: 44 PNAILMQARGGKILGEINGEAQIYPASMTKIMTVILGIENFDDLDEKITLTNEMFSGLYE 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + + F+ G + + + L ++ S + +A+A+++ +E F + MN ++ LG+ Sbjct: 104 QDATQAGFQPGEEVRVIDLLYGAMLPSGAECCIALADTISGSEADFAELMNKKARKLGME 163 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTD-FPQYM----HYFQIKGLEIKGKKYPN 202 THF ++ G+ HY+T +D+A+L + IK D F + + H + + G Y + Sbjct: 164 NTHFCDSTGLHNPDHYSTVKDIAVLMKYCIKNDTFREIVETSRHSTGVTNIHPDGITYYS 223 Query: 203 T---NWAVGTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNT 251 T N + T G G KTG+T +G +V+ A + I V GA D NT Sbjct: 224 TMFKNLSDPTVTGGKILGGKTGYTSEAGHCLVSFAEIEGREYIFVSAGASGADGNT 279 >gi|330500999|ref|YP_004377868.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01] gi|328915285|gb|AEB56116.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01] Length = 293 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG + + PD AS+TKLMTA VV +L PITI ++ E Sbjct: 32 LIDLKTGQELYSSNPDLRLPVASVTKLMTAMVVLDAKLPLDEVL--PITI-RDTQEMQGV 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS +T + L L ++ S N A ++A FV MN ++ LG+ +HF Sbjct: 89 FSRVRIGSEITRRDMLHLALMSSENRAAASLAHHYPGGHAAFVAAMNAKARALGMHNSHF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + + TARD+A++ + +P +H F + P N+ +G F Sbjct: 149 VEPTGLSEQ-NVATARDLALMV-KAANQYP-LIHQFSTDSEATVAFRKP--NYTLG-FRN 202 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V + ++ + V+LGA + T Sbjct: 203 TNALVRKADWNINLSKTGFTNAAGRCLVMATTIANRPVAFVVLGAFGKYT 252 >gi|169825187|ref|YP_001692798.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328] gi|167831992|dbj|BAG08908.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328] Length = 289 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 18/136 (13%) Query: 47 PDHPWNPASLTKLMTAYVVFSFLKE--KKAMLTTPIT-------ISKNASEYPPSNSTFK 97 PD PASLTK+MT Y +++ KKA PI + +NAS + F Sbjct: 56 PDKKVYPASLTKMMTVYTALGKIEDFDKKA----PIDKKSYQKLVKQNASM-----AGFY 106 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 T ++ L ++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G Sbjct: 107 GNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEG 166 Query: 158 VVQHGHYTTARDMAIL 173 + + HY++A+DMA L Sbjct: 167 MDEDDHYSSAKDMAFL 182 >gi|257466039|ref|ZP_05630350.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans ATCC 25563] Length = 381 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT V F ++ +A + I+K+ S + K G TL + ++ + Sbjct: 160 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGEKFTLLDLIRATAI 219 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYT------ 165 SAN+ A A+A+ + K F++ MN ++ +G+S + + G+ YT Sbjct: 220 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPT--RYTKEPMDI 277 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTC 222 TAR + LS +P+YM IK ++I + N N +G G G+KTG+ Sbjct: 278 GTARGIYKLSLE-AIKYPEYMEIAGIKQMKIHNGRISIRNRNHLIGEE-GIYGIKTGYHK 335 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +NI ++ G + I VILG R+ LL Sbjct: 336 EAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 374 >gi|89893842|ref|YP_517329.1| hypothetical protein DSY1096 [Desulfitobacterium hafniense Y51] gi|219668209|ref|YP_002458644.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|89333290|dbj|BAE82885.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538469|gb|ACL20208.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 324 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MTA + L + + + + S + F+ +++ + L ++ Sbjct: 96 PASLTKIMTAILAIENLPNLQEKIRLSQATFQGLYQANASMTGFQPEEQVSVMDLLYGVM 155 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S + V +AE + +E+KF MN + LG++ THF NA G+ HYTT +D+A+ Sbjct: 156 LPSGAESCVGLAERIAGSERKFALLMNQKAAELGMNHTHFENATGLHAENHYTTVKDLAV 215 Query: 173 -LSWRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAV--------GTFLGADGMKT 218 LS+ ++ D F H G + +T ++V G LG KT Sbjct: 216 LLSYALQNDLFREVFTASRHSTPPTNKHPGGITFYSTMFSVLGSSKIAGGEILGG---KT 272 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA 246 G+T +G + + A G + I + GA Sbjct: 273 GYTDEAGLCLASLAQVGKEQYILITAGA 300 >gi|315917196|ref|ZP_07913436.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans ATCC 25563] gi|313691071|gb|EFS27906.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans ATCC 25563] Length = 388 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT V F ++ +A + I+K+ S + K G TL + ++ + Sbjct: 167 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGEKFTLLDLIRATAI 226 Query: 114 KSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYT------ 165 SAN+ A A+A+ + K F++ MN ++ +G+S + + G+ YT Sbjct: 227 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPT--RYTKEPMDI 284 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTC 222 TAR + LS +P+YM IK ++I + N N +G G G+KTG+ Sbjct: 285 GTARGIYKLSLE-AIKYPEYMEIAGIKQMKIHNGRISIRNRNHLIGEE-GIYGIKTGYHK 342 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + +NI ++ G + I VILG R+ LL Sbjct: 343 EAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 381 >gi|327485860|gb|AEA80266.1| Murein-DD-endopeptidase [Vibrio cholerae LMA3894-4] Length = 316 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 29/237 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I N PD AS+TKLMTA V A L PITI K+A E Sbjct: 52 VIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKL--PITI-KDAKEMKGV 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S K GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T F Sbjct: 109 HSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP--------- 201 + G + + +TARD+ +L + +P + K + +Y Sbjct: 169 VEPTG-LSAKNVSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRL 226 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 VHNDNWKI------DLTKTGFTNAAGHCLVMRTQMGRRQVAFVVL-----DTKGKLS 272 >gi|323341544|ref|ZP_08081782.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis ATCC 25644] gi|323091028|gb|EFZ33662.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis ATCC 25644] Length = 448 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 28/241 (11%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEY 89 +D TG ++ + AS++KLMT Y+V +K K I K + + Sbjct: 59 VDAKTGQILYAKNAEQALPVASMSKLMTVYLVLQAIKNGKLSWNQEILPDAASQKVSQDT 118 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K T+ + ++ SAN A+A+A ++ T K F+ M ++ +G++ Sbjct: 119 QLSNVPLKADHKYTVKALYQATLIYSANGAAMALANAVGGTHKNFIDMMRKEARKMGIND 178 Query: 150 THFMNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 A+G+ + +A+DMAI+S R+ D+P+ + +I ++ Sbjct: 179 AEIYTANGLTNDEVFDAKYPGASDNAENKFSAKDMAIISQRLIEDYPEVLETTKITRMKF 238 Query: 196 KGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 N NW + L DG+KTG + ++G + + LI V+LG Sbjct: 239 NNGTDETTMENWNWMLPGLAKAYSELPVDGLKTGTSDSAGACFTGTVNKDGHRLITVVLG 298 Query: 246 A 246 A Sbjct: 299 A 299 >gi|331085110|ref|ZP_08334196.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407893|gb|EGG87383.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 402 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 22/262 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ I +L P + E +L L+D + G V+ E AS TK Sbjct: 1 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + ++ LT + +S+NA+ P + + L + L L+++S ND Sbjct: 61 IMTCILAL-----EEGNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMA-IL 173 AVAIAE + + + F MN +K +G T+F+ +G+ H TTA D+A I+ Sbjct: 116 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDNGEHSTTAEDLARIM 175 Query: 174 SWRIKTDFPQYMHYFQI--KG----LEIKGKK---YPNTNWAVGTFLGADGMKTGFTCAS 224 S+ I P+ + I KG +++ + N N + GA KTGFT + Sbjct: 176 SYCILKS-PKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKA 234 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 G+ V + ++ + +LG Sbjct: 235 GYCYVGALESRGRTFVVALLGC 256 >gi|15601625|ref|NP_233256.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586429|ref|ZP_01676217.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80] gi|121726497|ref|ZP_01679761.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52] gi|147672119|ref|YP_001215209.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395] gi|153216793|ref|ZP_01950617.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587] gi|153800546|ref|ZP_01955132.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3] gi|153817027|ref|ZP_01969694.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457] gi|153822999|ref|ZP_01975666.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33] gi|153825402|ref|ZP_01978069.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae MZO-2] gi|153828070|ref|ZP_01980737.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae 623-39] gi|227812436|ref|YP_002812446.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2] gi|229505985|ref|ZP_04395494.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286] gi|229510158|ref|ZP_04399638.1| murein-DD-endopeptidase [Vibrio cholerae B33] gi|229514293|ref|ZP_04403754.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21] gi|229517711|ref|ZP_04407156.1| murein-DD-endopeptidase [Vibrio cholerae RC9] gi|229526636|ref|ZP_04416040.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426] gi|229528279|ref|ZP_04417670.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)] gi|229605517|ref|YP_002876221.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MJ-1236] gi|254224796|ref|ZP_04918412.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51] gi|254284501|ref|ZP_04959468.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226] gi|254850028|ref|ZP_05239378.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10] gi|255746384|ref|ZP_05420331.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101] gi|262158262|ref|ZP_06029379.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1] gi|262169138|ref|ZP_06036831.1| murein-DD-endopeptidase [Vibrio cholerae RC27] gi|262190555|ref|ZP_06048797.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93] gi|297580128|ref|ZP_06942055.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385] gi|298499649|ref|ZP_07009455.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757] gi|9658302|gb|AAF96768.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549407|gb|EAX59436.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80] gi|121631092|gb|EAX63469.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52] gi|124114127|gb|EAY32947.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587] gi|124123990|gb|EAY42733.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3] gi|125622859|gb|EAZ51177.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51] gi|126512437|gb|EAZ75031.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457] gi|126519469|gb|EAZ76692.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33] gi|146314502|gb|ABQ19042.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395] gi|148876479|gb|EDL74614.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae 623-39] gi|149740948|gb|EDM55025.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae MZO-2] gi|150425286|gb|EDN17062.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226] gi|227011578|gb|ACP07789.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2] gi|227015517|gb|ACP11726.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395] gi|229334641|gb|EEO00127.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)] gi|229336794|gb|EEO01812.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426] gi|229345747|gb|EEO10720.1| murein-DD-endopeptidase [Vibrio cholerae RC9] gi|229348273|gb|EEO13231.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21] gi|229352603|gb|EEO17543.1| murein-DD-endopeptidase [Vibrio cholerae B33] gi|229356336|gb|EEO21254.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286] gi|229372003|gb|ACQ62425.1| murein-DD-endopeptidase [Vibrio cholerae MJ-1236] gi|254845733|gb|EET24147.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10] gi|255736138|gb|EET91536.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101] gi|262022419|gb|EEY41127.1| murein-DD-endopeptidase [Vibrio cholerae RC27] gi|262029944|gb|EEY48591.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1] gi|262033566|gb|EEY52062.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93] gi|297535774|gb|EFH74608.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385] gi|297541630|gb|EFH77681.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757] Length = 316 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 29/237 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I N PD AS+TKLMTA V A L PITI K+A E Sbjct: 52 VIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKL--PITI-KDAKEMKGV 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S K GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T F Sbjct: 109 HSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP--------- 201 + G + + +TARD+ +L + +P + K + +Y Sbjct: 169 VEPTG-LSAKNVSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRL 226 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 VHNDNWKI------DLTKTGFTNAAGHCLVMRTQMGRRQVAFVVL-----DTKGKLS 272 >gi|229522399|ref|ZP_04411815.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80] gi|229340384|gb|EEO05390.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80] Length = 316 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 29/237 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I N PD AS+TKLMTA V A L PITI K+A E Sbjct: 52 VIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKL--PITI-KDAKEMKGV 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S K GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T F Sbjct: 109 HSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRF 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP--------- 201 + G + + +TARD+ +L + +P + K + +Y Sbjct: 169 VEPTG-LSAKNVSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRL 226 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 VHNDNWKI------DLTKTGFTNAAGHCLVMRTQMGRRQVAFVVL-----DTKGKLS 272 >gi|320528533|ref|ZP_08029690.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei F0204] gi|320131119|gb|EFW23692.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei F0204] Length = 398 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 21/232 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86 Y LD +TG V++ D + ASLTK+MT + E + L +TI+ Sbjct: 44 YIFLDADTGQVLSAKKQDEQISIASLTKMMTVLLAI----ENSSSLNQTVTITDEMIDGL 99 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + + G T TL + V SA D A A+A + + +KF Q MN+ + LG Sbjct: 100 YDEQASVAGYINGDTATLLDLCYAAAVPSAADAANALAIQIGGSFEKFYQMMNDKAAQLG 159 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY------ 200 + T F +AHG+ + G Y+T D++ L R P + F K + Y Sbjct: 160 MDHTVFKSAHGLDRDGQYSTVEDISKL-LRYALQNPTFKEIFSTKEYTTQATAYYPFGIP 218 Query: 201 -PNTNWAVGTFLGAD-----GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +T WA G + G KTG+T +G I A D ++IAV GA Sbjct: 219 LASTIWAYADTYGYNLTNLSGGKTGYTLQAGRCIAYWATVNDMTIIAVTAGA 270 >gi|307331360|ref|ZP_07610480.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] gi|306882983|gb|EFN14049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] Length = 293 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 24/252 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-- 90 +++ TG + D + S TK+MTA VV L + L +T+ K S+Y Sbjct: 44 VMNNGTGKSLFTKAADTRRSTGSTTKIMTARVV---LAQPNLNLDAKVTVQKAYSDYIVD 100 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNT 141 S++ G +T+ L L++ S D A A+A+ K F+ MN T Sbjct: 101 NNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNTT 160 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----- 196 +K+LGL+ THF + G+ + +Y+T RD+ L+ + + + K + K Sbjct: 161 AKSLGLTNTHFDSFDGIGRGANYSTPRDLTKLA-SSAMKYSTFRTVVKTKSTKQKVTTKS 219 Query: 197 -GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G +Y NTN +G++ G G+KTG + + +V +A + +++I +L + + R Sbjct: 220 GGYRYMSWTNTNNLLGSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASSSVDAR 279 Query: 253 NKVSASLLSMGF 264 + ++ GF Sbjct: 280 TADAKKIMDYGF 291 >gi|291563060|emb|CBL41876.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 461 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 22/228 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD +TG ++ AS TK+MT + + + L T + IS A+ P Sbjct: 103 LLDGDTGRILYGKNEKKVLPMASTTKIMTCILAL-----ENSGLDTEVEISDRAASMPEV 157 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 KG L++ L L+++S ND AVAIAE++ + + F MN + LG T+F Sbjct: 158 KLHAGKGEKYRLEDLLYSLMLESHNDTAVAIAEAVGGSVENFADMMNGKAAELGCDDTYF 217 Query: 153 MNAHGVVQHG------HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGL------EIKGKK 199 + +G+ H TTA D+A IL + I P + I ++ G + Sbjct: 218 LTPNGLDAEDKESGKIHSTTAADLARILRYCISLS-PAKEEFLAITRAPSHAFSDLSGTR 276 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N N + + GA KTGFT +G+ V + + ++ IA +L Sbjct: 277 SFSCVNHNALLTSMEGAVSGKTGFTGKAGYCYVGAVKKDEKLFIAALL 324 >gi|77409053|ref|ZP_00785771.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae COH1] gi|77172347|gb|EAO75498.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae COH1] Length = 395 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--- 90 +D ++G ++ E + P ASLTK+MT Y+V+ + T + IS +YP Sbjct: 19 VDLDSGKILYEKDANKPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNIS----DYPYQL 74 Query: 91 -----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 SN +K T+ + ++ SAN A+A+AE + TE KFV M + Sbjct: 75 TRESDASNVPLEK-RRYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKW 133 Query: 146 GLSATHFMNAHGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIK 191 G+ +H +NA G+ G++ +ARD+AI ++ + ++P + Sbjct: 134 GIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIAAYHLVNEYPSILKITSKS 193 Query: 192 GLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + N+ + G G+KTG T +G + +A++ + L+ VI+ A Sbjct: 194 VAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHA- 252 Query: 248 DRNTRNK 254 D+ ++K Sbjct: 253 DKADKDK 259 >gi|187734951|ref|YP_001877063.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila ATCC BAA-835] gi|187425003|gb|ACD04282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila ATCC BAA-835] Length = 307 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 12/231 (5%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S T + ++D TG V+ + AS KL+TA VV + L + Sbjct: 63 SAPRTPRCASACVMDALTGKVLFSHNGLQHRQVASTQKLVTAMVVM-----EHGSLDKKV 117 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 I + ++ P+ F+ G + L ++++S ND+A+A+A + +F Q MN Sbjct: 118 VIQPSDTKADPTKLGFRAGEVYSRRELLNAMMIRSFNDVALALARDTAGSVPRFAQLMNA 177 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF---QIKGLEIKG 197 ++ +G+ + F N +G+ Y+TA DMA ++ + + P+ + Q G Sbjct: 178 KARQMGMYNSRFANPNGLPAD-QYSTAIDMARCAYYVYRN-PELRNIICKRQYAFTRANG 235 Query: 198 KK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + NTN + GMKTG+T A+G +V+SA + +I V+LG Sbjct: 236 RTLLLRNTNKLLTQNPWVTGMKTGYTNAAGRCLVSSAGVNGRHVIVVVLGC 286 >gi|289770578|ref|ZP_06529956.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] gi|289700777|gb|EFD68206.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] Length = 260 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 22/251 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ TG + D + S TK+MTA VV S + K L +TI S+Y Sbjct: 11 VMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVLS---QPKLNLDAKVTIQMAYSDYIVS 67 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN T+ Sbjct: 68 KNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIGKMNATA 127 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQI-KGL 193 K+LGL THF + G+ +Y+T RD+ ++ +R +Y + KG Sbjct: 128 KSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTRTKKGG 187 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + NTN +G++ GA G+KTG + + +V +A + +++I +L + R Sbjct: 188 TRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASSSSAQRA 247 Query: 254 KVSASLLSMGF 264 K + L++ F Sbjct: 248 KDATKLMNYAF 258 >gi|222831972|gb|EEE70449.1| predicted protein [Populus trichocarpa] Length = 155 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 7/106 (6%) Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 MKTG+ C+SGFN+VA+A +G+++L AV+LGA + R +++A LL+ GF +T Sbjct: 1 MKTGYICSSGFNLVATATRGERTLAAVVLGAQSQVQRAEIAADLLTRGF--ETQGLGAPS 58 Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 I+ + ++ +V +I E+C+ + +MKE +D E I Sbjct: 59 IVDLRPSEQVTEDVADIRPEICSEEA----VAKRMKE-RDDEGRLI 99 >gi|299534813|ref|ZP_07048142.1| penicillin-binding protein dacF precursor [Lysinibacillus fusiformis ZC1] gi|298729658|gb|EFI70204.1| penicillin-binding protein dacF precursor [Lysinibacillus fusiformis ZC1] Length = 278 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 14/203 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPP 91 LL G V+ E D PASLTK+MTA V + + P TI+ N + Sbjct: 40 LLLNEQGEVLYEKNADAIIYPASLTKIMTAIVAIEMTDNLQTQTIVEPQTIA-NYTAQNA 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F+ G +T ++ L ++ S D +A+++ +E KFV MNN ++ LG+ T+ Sbjct: 99 SMAGFQAGDFVTTEDLLYGTLLASGADATGTLADAVAGSEGKFVTLMNNKAQELGMHDTY 158 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN----TNWAV 207 F+N G+ H ++ RD++ L R + P + F K PN TN Sbjct: 159 FVNTSGLHDEAHVSSVRDISKL-LRYALENPTFYQIFTSKSYT---TYVPNQLIITNSLF 214 Query: 208 GTFLGAD----GMKTGFTCASGF 226 G D G KTG+T +G Sbjct: 215 TKLPGLDSPIIGGKTGYTPEAGL 237 >gi|225389445|ref|ZP_03759169.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme DSM 15981] gi|225044492|gb|EEG54738.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme DSM 15981] Length = 448 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 53/295 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L D TG V+ D AS TK+MT + +T +K A+ P Sbjct: 72 LADGLTGRVLYGKGEDTIRPMASTTKIMTCILALELGNPDDV-----VTATKEAAGQPKV 126 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G T L + L L+++S ND AV IAE + + F + MN +K LG T+F Sbjct: 127 HLGVQSGQTFYLKDLLYSLMLESHNDAAVMIAEHIGGSVPGFARLMNEKAKALGCENTYF 186 Query: 153 MNAHGV---------VQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLE------IK 196 + +G+ V+H H TTA D+A I+++ + P+ + +I + + Sbjct: 187 ITPNGLDAKETDEAGVEHVHSTTAADLARIMAYCVNLS-PKRQEFLEITQTQNYFFTDVP 245 Query: 197 GKKYPNTNWAVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 GK N DG+ KTGFT +G++ VA A++++ R Sbjct: 246 GKHSYNCTNHNAFLTMMDGVVSGKTGFTGGAGYSYVA---------------AMEKDGRP 290 Query: 254 KVSASLLSMGF-----YNKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVC 297 V A LL G+ + D +K+ +Y +KD Y++ + VP ++ +C Sbjct: 291 YVIA-LLGCGWPPHKTWKWADARKLFNFGLEHYQMKDVYEEQRFSPVP-VTGGLC 343 >gi|145219555|ref|YP_001130264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris vibrioformis DSM 265] gi|145205719|gb|ABP36762.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium phaeovibrioides DSM 265] Length = 311 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 19/244 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V D PASLTK++T + + L + I + A+ Sbjct: 44 YIIKDLGYSRVFMSKDSDRLIRPASLTKILTCVLAI-----ESGKLDQIVVIPREATLVE 98 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS + F+ G + L + +K +V S+ND A AIA L + K F MN ++ +G+ + Sbjct: 99 PSKAGFRTGDRIRLIDLVKASMVSSSNDAAFAIAMHLSGSVKGFAAAMNYRARAIGMKHS 158 Query: 151 HFMNAHGV---VQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEI----KGKKY-- 200 F N G G+ +TA D+ +L+ + I+ P + + + + GK + Sbjct: 159 SFTNPAGFDTGEYSGNLSTAEDLLVLTEYAIR--LPHFNDMAMLGSVIVPEYRTGKMFLL 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N + + A G+KTGFT +G ++A A + + ++ V+L A R R ++ + Sbjct: 217 RTHNKLLARYPYAVGIKTGFTRRAGKCLIARAQKNGRDMLLVMLNA--RGDRWGIAEEMF 274 Query: 261 SMGF 264 F Sbjct: 275 EKAF 278 >gi|326802681|ref|YP_004320499.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae ACS-120-V-Col10a] gi|326650727|gb|AEA00910.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae ACS-120-V-Col10a] Length = 455 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 36/260 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D +G ++ + D ASLTKL++ YV++ L + K L + +S ++ Sbjct: 54 IDQESGQILYQKDADDLHGIASLTKLLSLYVIYDQLAQGKLSLDEAVPVSPALAQQSQVE 113 Query: 92 --SNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN G + ++D + +I+ SAN VA+AE + +E F+ M LG+ Sbjct: 114 GLSNVPLVAGPANYSVDQLIDAVIIASANSATVALAEKVAGSEDHFIDLMAQKLDQLGVD 173 Query: 149 ATHFMNAHGV-------VQHGHY-------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + ++A G+ + G + +A+ +A++ R+ D+P Q+K E Sbjct: 174 DYNLVSASGLRGELRADARPGQFAESEENRVSAKSLALVVQRLLKDYPDIQSRAQVK--E 231 Query: 195 IKGKKYPNTNWAV----------GTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIA 241 + P +W V G G G+KTG +G+ +VA++ + +I Sbjct: 232 KVFQVAP--DWQVTMTNSNQLLPGMTYGRQDITGLKTGTELGAGYCLVATSFINQRPVIL 289 Query: 242 VILGALDRNTRNKVSASLLS 261 V LGA R ++ LLS Sbjct: 290 VTLGAESNEDRFLETSRLLS 309 >gi|167772310|ref|ZP_02444363.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM 17241] gi|167665413|gb|EDS09543.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM 17241] Length = 384 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 12/222 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD TG V+ + AS TK+M+ + + + T+ +A S Sbjct: 52 VLDAATGRVLFAKNANARLPMASTTKIMSTLLTLEQDGQDEW-----FTVDPDAIRVEGS 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + + G +TL +++ S ND A A A + +++ F + MN + LG+ +HF Sbjct: 107 SMGLRVGDRVTLSALAYGMMLPSGNDAANAAAVRIAGSKEAFARMMNERAAELGMEDSHF 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW------A 206 + G+ + HY++A DMA+L+ R P++ K ++ P W Sbjct: 167 VTPSGLDDNAHYSSAYDMALLT-REALSNPRFAEICSQKSAKVCFGNPPADRWFSNHNRL 225 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + A G+KTGFT A+G +V+ A +G LI V L D Sbjct: 226 LKLYPDAAGVKTGFTDAAGRCLVSYAQRGGVRLIVVTLNCPD 267 >gi|160943813|ref|ZP_02091044.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii M21/2] gi|158444987|gb|EDP21990.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii M21/2] Length = 443 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NA 86 Y ++D +TG V+A+ D +PAS+TK+MT + + K + +T++ + Sbjct: 36 YCIMDADTGLVLAQQNMDEELHPASITKVMT--LGLACEKAQGDWDDVKLTVTHEDVYSL 93 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNL 145 + S+ ++G + L +AL + SAND A +AE T V MN + L Sbjct: 94 AGTDSSHIALREGEEVPLVDALYATQMASANDGANLLAEYFGGGTIADGVAAMNAQVEEL 153 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIK 178 GL+ THF N HG+ HYT+ DMA IL W ++ Sbjct: 154 GLAHTHFSNPHGISDEDHYTSCYDMAQILRWALQ 187 >gi|7766852|pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGADAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|297587879|ref|ZP_06946523.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC 53516] gi|297574568|gb|EFH93288.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC 53516] Length = 289 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 33/194 (17%) Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPD 48 MR+ L I + +L ++ +A NK Y++ D + ++N PD Sbjct: 1 MRKKLEIAGITLLIVIGVYFIFKVANANKFDKLSFNADCIYVYSIDDEK--EIFSKN-PD 57 Query: 49 HPWNPASLTKLMTAYVVFSFLKE--KKAMLTTPIT-------ISKNASEYPPSNSTFKKG 99 PASLTK+MT + +++ KKA PI +++NAS + F Sbjct: 58 KKVYPASLTKMMTVHTALGEIEDFDKKA----PIDKKSYQKLVAQNASM-----AGFYGN 108 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 T ++ L ++ SA + A ++A ++ +++KFV MN +K +GL+ THF N+ G+ Sbjct: 109 EPTTFEDLLYGTMLASAGECADSLAINVAGSKEKFVDLMNENAKKMGLNNTHFKNSEGMD 168 Query: 160 QHGHYTTARDMAIL 173 + HY++A+DMA L Sbjct: 169 EDNHYSSAKDMAFL 182 >gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|315445798|ref|YP_004078677.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|145217931|gb|ABP47335.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|315264101|gb|ADU00843.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length = 407 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 21/259 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++TA L++ M T P T A E Sbjct: 98 WLVADLDSGDVIAARDPHGRHRPASIIKVLTA---MQALRDLPLMKTVPGTPEDAAQEG- 153 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + +G T+++ L L++ S ND A A+A + + +N ++ LG T Sbjct: 154 -TKVGVGEGGVYTVNDLLHGLLMYSGNDAAHALAMQMGGMDTAL-NKINVLAQKLGARDT 211 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YP--NTNW 205 G+ G T+ DM + +R P + + + G++ YP N N Sbjct: 212 RVATPSGLDGPGMSTSVYDMGLF-YRYAWHNPVFADIVATRATQFPGREGAGYPIENDNK 270 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----SASLL 260 + + GA G KTG+T +G V +A + + L+AV++ R TR + +A LL Sbjct: 271 LLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLVAVLM----RGTRQPIAPWEQAARLL 326 Query: 261 SMGFYNKTDRKKINYIIKD 279 GF K I D Sbjct: 327 DYGFATAPGTKVGTLIEPD 345 >gi|295110612|emb|CBL24565.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 417 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 24/235 (10%) Query: 48 DHPWNPASLTKLMTAYVVF--SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 D P + K+MT + + L ++ M T ++ + +N + + T++ Sbjct: 76 DQVLYPGATVKVMTTLLALENTQLSDQVTMTATGVSGVTDGG----ANISAQIDEVFTVE 131 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 L +++ SAND+A+ +AE + + FVQ MN + LG + T F N G+ +T Sbjct: 132 QCLYAIMLASANDVALQLAEHIGGSVDGFVQMMNARAPELGCTNTVFTNPTGLPDENQHT 191 Query: 166 TARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKK---------YPNTNWAVGTFL 211 TA DMA++ + D + + I + G NTN A + Sbjct: 192 TAHDMALI-MKAAADNESFQTIASTTSYTIPATNVSGGDRVLTNNFSMLTNTNAAYYQY- 249 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G + G+T ASG +V SA + +LIAV+L T + +ASLL+ GF N Sbjct: 250 -CTGGREGYTEASGSTLVCSAQKNGITLIAVVLQGTSGTTATE-AASLLNYGFDN 302 >gi|227890476|ref|ZP_04008281.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC 33200] gi|227849045|gb|EEJ59131.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC 33200] Length = 308 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 23/233 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TKL+T Y+ +KEKK T +T ++ S ++ + G T+ Sbjct: 76 ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYY 135 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHY 164 ++KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ + G Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195 Query: 165 TT------ARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYPNTNWAVGTFL 211 TT A DMAI++ ++ ++P+ ++ YFQ L I K N + Sbjct: 196 TTVENKMSANDMAIVARKLIINYPEILNTTKLARAYFQ-NTLMINSNKMLNGLSYYDSIF 254 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 DG+KTG T +G + + + +I VILGA + N R + LLS F Sbjct: 255 PVDGLKTGTTDGAGSCFTCTLNKNGKRVITVILGAENDNERFVETKKLLSYCF 307 >gi|148379380|ref|YP_001253921.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 3502] gi|153934047|ref|YP_001383756.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936557|ref|YP_001387306.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|148288864|emb|CAL82948.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|152930091|gb|ABS35591.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932471|gb|ABS37970.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] Length = 424 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 32/262 (12%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L+I + + SN+F + ++N P +D TG +I D PAS TK Sbjct: 11 LLIFILTLTSNVF---AAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPIT-ISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 +TA + + K P T +K+ +Y P N G T+ +N + L Sbjct: 68 YLTALL---LAENKGKNDNIPYTATAKSQPQYSLNINLHPINI----GETIKAENVMDGL 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ S ND+A I ++L K F M+ + L L THF+ +G+ HYTTA D++ Sbjct: 121 LLFSGNDVAYMIGDALAGNNKNFENMMSKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLS 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGM---KTGFTCASG 225 ++S R P K I KG K N LG DG KTG+T A+G Sbjct: 181 VIS-RAALKNPWVYQSSNKKESSIVTSKGTKMAIEN--SNKLLGKDGCVAGKTGYTDAAG 237 Query: 226 FNIVASAIQGDQSLIAVILGAL 247 +V + + ++ V++G++ Sbjct: 238 RCLVTLFNRDGRKILGVVMGSV 259 >gi|168186694|ref|ZP_02621329.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] gi|169295300|gb|EDS77433.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] Length = 443 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 39/188 (20%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 K G TM+ D+A+K L++ SANDIA IA+++ + F + MN+ LGL THF+ Sbjct: 104 LKVGDTMSADDAMKGLLLHSANDIAYMIADNVGGNAENFAKMMNDKVSQLGLKNTHFVTP 163 Query: 156 HGVVQ--HGHYTTARDMAILS-------WRIKTDFPQYMHYFQIKGLEIKGK--KYP-NT 203 +G+ HYT+A D++I+ W T M+ Q K LE+ YP N Sbjct: 164 NGLDNGISNHYTSAYDLSIIGKAAYSNEWVRNT-----MNLKQSK-LELSNGILGYPTNR 217 Query: 204 NWAVGTFLGAD--------------------GMKTGFTCASGFNIVASAIQGDQSLIAVI 243 N +GT L ++ G KTG+T +G +VA + ++ LI V+ Sbjct: 218 NKLLGTTLDSNFLSKLGNNSKETPVSDAICIGGKTGYTTKAGRCLVAMFNKDNRVLIGVV 277 Query: 244 L-GALDRN 250 + A D+N Sbjct: 278 MKSAYDKN 285 >gi|7766854|pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|4240003|dbj|BAA74787.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens] Length = 183 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 13/172 (7%) Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ L Sbjct: 1 AASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARML 60 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKG------- 197 GL ++F + HG+ H+++A D+A+L S ++ F + +I G + G Sbjct: 61 GLKDSNFQSPHGLDSQMHFSSAYDLAVLMSKAMEEPF-----FREISGTKEVGAEKYNFT 115 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + Y N N + A+G KTG+T +G +V+S +++I V+L R Sbjct: 116 RSYSNINKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTR 167 >gi|291521155|emb|CBK79448.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7] Length = 438 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 27/230 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 ++D ++G ++ D PAS+TK++T ++ + A L IT S++ + Sbjct: 72 VIDVDSGEILYYKNMDDRHYPASITKVLTGLLLI-----ENANLDDTITFSQDCWNGLNY 126 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y N G +T+++AL +++ SAN++ A+ + + F MN +K LG + Sbjct: 127 YNDMNIGILDGEQLTVNDALHAILMSSANEVCNGAAKFVSGSVSAFCDLMNERAKALGCT 186 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKY 200 THF+N +G+ HYT+A DMA++S +R T +Y + ++ + + Sbjct: 187 NTHFVNPNGLHDPDHYTSAHDMALISREAIQNPIFREITGCTEY----TVASTNLRPEGF 242 Query: 201 PNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 P ++ + + G KTG+T + +V A + +L V++ Sbjct: 243 PLSHKHQMLMYTKYHYDACIGGKTGYTSEAKNTLVTYAEKDGHTLACVVM 292 >gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|309774606|ref|ZP_07669631.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] gi|308917637|gb|EFP63352.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 3_1_53] Length = 336 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 70/141 (49%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D V+ E D PASLTK++TA V ++ +T K +E Sbjct: 71 YAMVIDLKDQQVLYEKNSDKKLFPASLTKVLTAIVALDNAEDLHKKITITDKDIKGLAEA 130 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G +T+++ L LI+ S D A A+A L + FV+ MN+ + +G++ Sbjct: 131 NASVAGLAVGEQVTIEDLLYALILPSGADGANALANHLNGSVPNFVKDMNSKADGMGMTH 190 Query: 150 THFMNAHGVVQHGHYTTARDM 170 THF N G+ HYTT +DM Sbjct: 191 THFTNTTGLHDKQHYTTLQDM 211 >gi|329941308|ref|ZP_08290587.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] gi|329299839|gb|EGG43738.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] Length = 851 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 19/204 (9%) Query: 54 ASLTKLMTAYVVFS--FLKEKKAMLTTPITISKNASEYPPSN--STFK--KGSTMTLDNA 107 AS+TK+MTAY++ LK + I + + A + ++ ST K G ++T A Sbjct: 530 ASVTKVMTAYLILKNHPLKGGEGEK---IKVDQPAEDQATADGESTVKVHAGDSITEKEA 586 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+ L++ SAN++A +A +EK FV MN T+K LG++ T + + G ++ +TA Sbjct: 587 LQALLIASANNVARLVARWDAGSEKAFVAKMNTTAKQLGMTNTTYTDPSG-LEKTTVSTA 645 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 D L+ D + QI + + KG K+ N N VG + G G+KTG T A Sbjct: 646 VDQVKLAKAAMKD----SSFRQIAAMMEYTDYKGDKHSNWNRLVG-YNGVVGIKTGTTTA 700 Query: 224 SGFNIVASAIQGDQSLIAVILGAL 247 +G N+V +A++ I+GA+ Sbjct: 701 AGGNLVFAAVKKVGGQTRTIVGAV 724 >gi|295104040|emb|CBL01584.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii SL3/3] Length = 443 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NA 86 Y ++D +TG V+A+ D +PAS+TK+MT + + K + +T++ + Sbjct: 36 YCIMDADTGLVLAQQNMDEELHPASITKVMT--LGLACEKAQGDWDDVKLTVTHEDVYSL 93 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNL 145 + S+ ++G + L +AL + SAND A +AE T V MN + L Sbjct: 94 AGTDSSHIALREGEEVPLVDALYATQMASANDGANLLAEYFGGGTIADGVAAMNAQVEEL 153 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIK 178 GL+ THF N HG+ HYT+ DMA IL W ++ Sbjct: 154 GLAHTHFSNPHGISDDDHYTSCYDMAQILRWALQ 187 >gi|213160842|ref|ZP_03346552.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 236 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 73 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 130 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 131 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 190 Query: 143 KNLGL 147 LGL Sbjct: 191 NALGL 195 >gi|163813991|ref|ZP_02205384.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759] gi|158450685|gb|EDP27680.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759] Length = 425 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 24/230 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E D AS TK++T L + L + +S A++ P Sbjct: 69 LIDGETGDILYEKNADAHRPNASTTKILTC-----ILALECGNLEDTVAVSSYAAKQPEV 123 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G + TL++ L ++++S ND AV IAE + + + F MN ++ +G +T+F Sbjct: 124 RLGAQEGESYTLEDMLYAMMLESYNDTAVMIAEHIGGSMEVFADMMNRKAREIGCHSTYF 183 Query: 153 MNAHGVVQH----GHYTTARDMA-ILSWRIKTDFPQYM---------HYFQIKGLEIKGK 198 + +G+ GH T+A D+A I+ + I + M H F K + Sbjct: 184 ITPNGLDAQDESGGHGTSADDLARIMRYCILVSPERDMFLKITQSSSHTFSEKS---GSR 240 Query: 199 KYPNTNWAVGTFLGADGM--KTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + N + ++ + KTGFTC +G+ V +A + + I +LG Sbjct: 241 TFSCVNHNAFLNMSSEALSGKTGFTCDAGYCYVGAANKNGHTYIWSLLGC 290 >gi|291542985|emb|CBL16095.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63] Length = 450 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE----KKAMLTTPITISKNASE 88 L++ ++G + E D PAS TK+MT + + + K + + + + KN Sbjct: 44 LVNMDSGQTVYEKDADSKRYPASTTKIMTYIIAVENIADLDNTKIPIKQSVLDVLKNTGS 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGL 147 +N G +MT + L ++V S ND A+ +A+ + + FV+ MN +K LG Sbjct: 104 -SLANVENHVGKSMTAIDLLYSMMVPSGNDAAMVLADYIGEGNVDNFVKLMNEKAKELGC 162 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKT---DFPQYMHYFQIKGLEIKGKKYP--N 202 THF N G+ HYTTARDM ++I T P++ G Sbjct: 163 ENTHFANPDGLHDPDHYTTARDM----YKITTYALTLPRFEEITNTCTYTCDGDDTALVT 218 Query: 203 TNWAVGT-------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 TN+ + ++ A G+KTG T +G +V +A S +A++L A Sbjct: 219 TNYLIDANRGGEYYYMYAKGIKTGTTNEAGRCLVTTASADGYSYMAILLHA 269 >gi|326792977|ref|YP_004310798.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326543741|gb|ADZ85600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 432 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 32/232 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ T ++ E + PAS+TKL+T ++ L E IT S+N+ P Sbjct: 33 LIEAKTNTILYEKNAYSKFYPASITKLLTTLIIEEQLSENHI-----ITKSQNSVNTIPK 87 Query: 93 NST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +S+ K G + N L L++ S N IA +A + + F + MN +K LG Sbjct: 88 DSSEIGLKIGDSYNKVNGLYGLLLGSDNFIAHDLALAHSGSISNFAELMNTRAKALGAKN 147 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---------QYMHYFQIKGLEIKGK-- 198 THF N HG HYTT DMA ++ + D P Q+ Y K I K Sbjct: 148 THFTNPHGYHDPNHYTTPYDMAQIA-KGAFDNPTVQKIAGTAQFNFYVNNKNKYIPIKNT 206 Query: 199 ------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + P N AV KTG+ +G +VA A+ GD LIA ++ Sbjct: 207 SRLLKSETPYYNPAVV------ACKTGYHSDAGQTLVAKAVYGDMELIAAVM 252 >gi|160882047|ref|YP_001561015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160430713|gb|ABX44276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 516 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 33/232 (14%) Query: 33 LLDTNTGHVIAEN--YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--- 87 +++ +TG ++ E Y H PAS+TK++T + L + L +T+S A Sbjct: 63 VMEASTGLILYEKDIYDKH--YPASITKILT-----TLLAIENCNLNETMTMSHAAEWDV 115 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLG 146 ++ S +G +++L +AL ++++SAN+++ + E + K + F MN +K LG Sbjct: 116 DFNSSRIGLVEGESLSLKDALYAVMLESANEVSFGVGEHVAKGSMTDFTAMMNARAKELG 175 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 ++F+N +G+ HYT A DMA++S R P++ + I P TN Sbjct: 176 CVNSNFVNPNGLHDDNHYTCAYDMALIS-RAAIMLPEFRTITGTRTYTI-----PATNKN 229 Query: 207 VGTFL--------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 V L GA G KTG T + +V A + +LIAV+L Sbjct: 230 VARPLANHHRFIRKTSNYDGAIGGKTGGTTEAKTTLVTYAERNGLTLIAVVL 281 >gi|327440835|dbj|BAK17200.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris StLB046] Length = 324 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 9/246 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D G + +H P ASLTK+ TA VV + + LT + ISK AS Sbjct: 28 YVVIDAENGRTLM-GVNEHARLPIASLTKIWTALVVL-----ENSELTDEVVISKEASLV 81 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ + T T+D L L+++S ND A A+AE + + + FVQ MN ++ L Sbjct: 82 EGSSIYLLENETYTIDYLLHGLMMQSGNDAATALAEHVGGSVEGFVQLMNEKAELYQLHE 141 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ H ++A + A + +I P++ + G+++ N + + Sbjct: 142 TTFTNPTGLHNEAHLSSAYNTAKM-LQIAMMNPEFRKIASTQNFS-DGRQWRNKHRLMHE 199 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +GA KTG+T +G + + +S + V + + ++ A + F +T Sbjct: 200 KIGAIAGKTGYTKVAGRTLATFFEREQKSFVVVTINEGNDWNIHRNLADFIDNNFEQQTI 259 Query: 270 RKKINY 275 KK Y Sbjct: 260 VKKGKY 265 >gi|295094890|emb|CBK83981.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1] Length = 376 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 28/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD TG ++ + D AS TK++T L + L +T S AS+ P Sbjct: 45 LLDGETGDILYDKCSDEHRPNASTTKILTC-----ILAIECGNLADDVTASSYASKMPEV 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + G TL++ L ++++S ND AV IAE + + + F + MN ++ +G +T+F Sbjct: 100 RLGVRDGEKYTLEDMLYAMMLESYNDAAVVIAEHIGGSVQHFAEMMNAKAEEIGCHSTYF 159 Query: 153 MNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------ 201 + +G+ H T+A D+ I+ + I PQ + +I + K Y Sbjct: 160 ITPNGLDAQDENGVHGTSAEDLVRIMRYCILIS-PQKDEFLKIT----RTKSYTFTDNTG 214 Query: 202 -------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N N + A KTGFTC +G+ + +A + I +LG Sbjct: 215 NRTFACINHNAFLDMMPCALSGKTGFTCDAGYCYIGAAEVEGHTYIWALLGC 266 >gi|312862585|ref|ZP_07722826.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] gi|311101845|gb|EFQ60047.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus vestibularis F0396] Length = 423 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 30/246 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E S+ KL+TAY+V+ + + + + IS +YP Sbjct: 45 VEANTGKILYEKDATTSTGIGSIIKLLTAYMVYKAVDQGDLKWNSKVDIS----DYPFEL 100 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + LD L ++ SAN ++A+AE + TE KFV M K+ G Sbjct: 101 TVSAGVSNIPLDARKYTVKQLLDATLIASANSASIALAEEIGGTESKFVDMMKAQLKDWG 160 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ +NA G+ + +A+D+A+++ + ++P+ + + Sbjct: 161 ITDAKIVNASGLNNSYLGDNIYPGSKSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTE 220 Query: 193 LEIKG-KKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + G K +N+ + G DG+KTG T +G + VA + + S+I VIL + Sbjct: 221 ADFDGVNKLKTSNYMLKGQPSYRKGVDGLKTGTTDLAGASFVAHSNESGMSIITVILNSD 280 Query: 248 DRNTRN 253 + +T + Sbjct: 281 NTDTDD 286 >gi|171466626|gb|ACB46501.1| D-ala, D-ala carboxypeptidase [Actinomadura kijaniata] Length = 309 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 23/249 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 LLD V P S+TK+MTAYVV K L IT+ + +Y Sbjct: 47 LLDVGAKKVRWSRSPHTKRRIGSITKVMTAYVVI-----KSGNLDRKITVQRKHVDYLRG 101 Query: 90 ---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S++ G +T+ L+ L++ S D A +A++ K FV MN T++ L Sbjct: 102 NGAGGSSAGLVVGDRLTVRQLLRALMLPSGCDAAYVLADAYGPGWKGFVAKMNKTARGLK 161 Query: 147 LSATHFMNAHGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199 ++ T + N G+ G Y+TA D L+ ++ + + Sbjct: 162 MTNTKYANFDGIDWKGATMYSTAYDQTRLA-AAAMKLKEFRSVVGTRSYRVPPTSTTHIY 220 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRNTRNKVS 256 + NTN +G + G G+KTGFT +G + + A +G + L+ ++L G+ +R Sbjct: 221 NWTNTNALLGKYKGMTGVKTGFTNMAGASFMFGAKRGGRELVGIVLNSGSGSYKSRRFTD 280 Query: 257 AS-LLSMGF 264 AS +L+ GF Sbjct: 281 ASKILNWGF 289 >gi|295102108|emb|CBK99653.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii L2-6] Length = 441 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P L+ E Y ++D +TG V+A+ + +PAS+TK+MT + + K + Sbjct: 24 VGPALTTTEA-----YCIMDADTGLVLAQQNMNEELHPASITKVMT--LGLACQKAQGNW 76 Query: 76 LTTPITISK----NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-T 130 +T+S + + S+ ++G + L +AL ++ SAND A +AE T Sbjct: 77 DGVKLTVSHEDVYSLAGTDSSHIALREGEEVPLQDALYGTMIASANDGANLLAEYFGGGT 136 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRI 177 + V MN LGL THF N HG+ HYT+ DMA IL W + Sbjct: 137 IEGGVAAMNAQVAALGLEHTHFANPHGISGDDHYTSCYDMAQILRWAL 184 >gi|153813196|ref|ZP_01965864.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174] gi|149830727|gb|EDM85818.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174] Length = 417 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 28/237 (11%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPPSNSTFKK--GSTMTL 104 D P + K+MT + L + A L+ +T++ S ++ T+ Sbjct: 75 DQVLYPGATVKVMT-----TLLTLENAQLSDQVTMTATGVSGVTDGGASISAQLDEVFTV 129 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + L +++ SAND+A+ IAE + + FVQ MNN + LG + T F N G+ + Sbjct: 130 EQCLYAIMLASANDVALQIAEQIGGSVDGFVQMMNNRAVELGCTNTVFTNPTGLPDENQH 189 Query: 165 TTARDMAIL--------SWRIKTDFPQY-MHYFQIKGLEIKGKKYPNTNWAVGTFLGAD- 214 TTA DMA++ S+R + Y + + G G++ N+++ A Sbjct: 190 TTAHDMALITKAAIDNESFRAIAETTSYTIPATNVSG----GERVLTNNFSMLNNTNASY 245 Query: 215 -----GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G + G+T ASG +V A + SLIAV+L T + + SLL+ GF N Sbjct: 246 YQYCLGGREGYTEASGSTLVCGAEKNGVSLIAVVLQGASGTTAAE-AVSLLNYGFDN 301 >gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length = 397 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 119/282 (42%), Gaps = 31/282 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG VIA P PAS+ K++TA + L K + T NA Sbjct: 94 WIVADMDTGDVIAARDPHGRHRPASIIKVLTATAALNELNLNKRVAGT--QDDANAEG-- 149 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+++ L L++ S ND A A+A L + Q +N + LG T Sbjct: 150 -TRVGVGPGGQYTINDLLHGLLMYSGNDAAHALAMQLGGWDPAL-QKLNTLAAKLGGRDT 207 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMH--YFQIKGLEIKGKKYP--NT 203 G+ G T+A D+A+ +W+ F +H +Q G + G YP N Sbjct: 208 RAATPSGLDGPGMSTSAYDIALFYRYAWQNPV-FADIVHTQSYQFPGRD--GGSYPIEND 264 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----SAS 258 N + + GA G KTG+T +G V +A + + LIAV+L + TR + +A Sbjct: 265 NKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLL----KGTRVPIAPWEQAAR 320 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 LL GF K + D + P +EE Q Sbjct: 321 LLDYGFATPPGTKVGTLVDPD------PSLAPKQAEEPSPAQ 356 >gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119867283|ref|YP_937235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] gi|108768606|gb|ABG07328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119693372|gb|ABL90445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] Length = 410 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 109/248 (43%), Gaps = 28/248 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG VIA P PAS+ K++ A L KA+ TP A+E Sbjct: 104 WLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKELNLAKAVPGTP---EDGAAEG- 159 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ G T+++ L L++ S ND A A+A L + ++ +N + LG T Sbjct: 160 -TSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLK-LNQLAGKLGGRDT 217 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGK----KYPNT 203 G+ G T+A D+A+ +WR P + + + G+ YP Sbjct: 218 RVATPSGLDGPGMSTSAYDIALFYRYAWR----NPTFTEIVATRTYDFPGRDGNPPYPIE 273 Query: 204 NWA--VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----S 256 N + + GA G KTGFT +G V A + + L+AV+L R TR + + Sbjct: 274 NDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLL----RGTRQPIAPWEQA 329 Query: 257 ASLLSMGF 264 A LL GF Sbjct: 330 ARLLDYGF 337 >gi|302867864|ref|YP_003836501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora aurantiaca ATCC 27029] gi|302570723|gb|ADL46925.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora aurantiaca ATCC 27029] Length = 427 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+ P PAS KL+ A + S L K + T + + Sbjct: 97 WLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDPKHVAVAT-----RADLDIE 151 Query: 91 PSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S G +++ L+++S ND A +A + + V MN ++ LG Sbjct: 152 PGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSAQAGVAEMNEQARRLGAG 211 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYM--HYFQI---KGLEIKGKKYP 201 TH + G+ G +T+A D+A+++ D F +Y QI L+ G + Sbjct: 212 QTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTERTQIPAQPALKKGGFQIQ 271 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSASLL 260 N N + + GA G KTGFT + + V +A + + L+ +LGA R R + A LL Sbjct: 272 NENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLLGAEARPVRGWQQGAQLL 331 Query: 261 SMGFYNKTD 269 F D Sbjct: 332 DWAFRLPRD 340 >gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] gi|126233645|gb|ABN97045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] Length = 410 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 109/248 (43%), Gaps = 28/248 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG VIA P PAS+ K++ A L KA+ TP A+E Sbjct: 104 WLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKELNLAKAVPGTP---EDGAAEG- 159 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ G T+++ L L++ S ND A A+A L + ++ +N + LG T Sbjct: 160 -TSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLK-LNQLAGKLGGRDT 217 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGK----KYPNT 203 G+ G T+A D+A+ +WR P + + + G+ YP Sbjct: 218 RVATPSGLDGPGMSTSAYDVALFYRYAWR----NPTFTEIVATRTYDFPGRDGNPPYPIE 273 Query: 204 NWA--VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----S 256 N + + GA G KTGFT +G V A + + L+AV+L R TR + + Sbjct: 274 NDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLL----RGTRQPIAPWEQA 329 Query: 257 ASLLSMGF 264 A LL GF Sbjct: 330 ARLLDYGF 337 >gi|329935730|ref|ZP_08285535.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] gi|329304821|gb|EGG48694.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] Length = 281 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 21/250 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++++ TG + D + S TK+MTA VV S + L + +TI K S+Y Sbjct: 33 VMNSGTGKSLYTKKADTRLSTGSTTKIMTAKVVLS---QSNLNLNSKVTIQKAYSDYIVR 89 Query: 93 NSTFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTS 142 N+ G +T+ L L++ S D A A+A+ S K F+ MN T+ Sbjct: 90 NNASSAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSSRSARVKSFLSKMNKTA 149 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLE 194 ++LGL+ THF + G+ +Y+T RD+ L+ +R K Sbjct: 150 RDLGLTNTHFDSFDGIGNGSNYSTPRDLTKLARNALKNSTFRTVVKTKSTKQKVTTKSGG 209 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + + G G+KTG + + +V +A + ++++ +L + R Sbjct: 210 YRYMNWSNTNPLLSGYSGTIGVKTGSGPEAKYCLVFAATRNGKTVVGTVLASSSVANRTS 269 Query: 255 VSASLLSMGF 264 + LL+ GF Sbjct: 270 DAKKLLTYGF 279 >gi|294630405|ref|ZP_06708965.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] gi|292833738|gb|EFF92087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] Length = 283 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 22/236 (9%) Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK----GSTMT 103 D + S TK+MTA VV S +K L +TI K S+Y N+ + G +T Sbjct: 47 DTKLSTGSTTKIMTAKVVLS---QKNLNLDAKVTIQKAYSDYVVKNNASQAHLIVGDKVT 103 Query: 104 LDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 + L L++ S D A A+A+ ++ K F+ MN +K+L L THF + G Sbjct: 104 VRQLLYGLMLPSGCDAAYALADKYGTGSTMSARVKSFIGKMNTAAKDLKLKNTHFDSFDG 163 Query: 158 VVQHGHYTTARDMA-ILSWRIK-TDFPQYMH--YFQIKGLEIKGKK-----YPNTNWAVG 208 + +Y+T RD+ I S +K +F + + K + G + NTN + Sbjct: 164 IGNGKNYSTPRDLTKIASSAMKNANFRAIVKTKSYTAKTVTKTGSTRTMATWTNTNTLLS 223 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 ++ GA G+KTG + + +V +A +G +++I +L + N R + LL+ GF Sbjct: 224 SYKGAIGVKTGSGPEAKYCLVFAATRGSKTVIGTVLASSSINQRATDATKLLNYGF 279 >gi|315505734|ref|YP_004084621.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora sp. L5] gi|315412353|gb|ADU10470.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora sp. L5] Length = 428 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 15/249 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+ P PAS KL+ A + S L K + T + + Sbjct: 98 WLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDPKHVAVATRADL-----DIE 152 Query: 91 PSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S G +++ L+++S ND A +A + + V MN ++ LG Sbjct: 153 PGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSAQAGVAEMNEQARRLGAG 212 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYM--HYFQI---KGLEIKGKKYP 201 TH + G+ G +T+A D+A+++ D F +Y QI L+ G + Sbjct: 213 QTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTERTQIPAQPALKKGGFQIQ 272 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSASLL 260 N N + + GA G KTGFT + + V +A + + L+ +LGA R R + A LL Sbjct: 273 NENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLLGAEARPVRGWQQGAQLL 332 Query: 261 SMGFYNKTD 269 F D Sbjct: 333 DWAFRLPRD 341 >gi|21222221|ref|NP_628000.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] gi|256786685|ref|ZP_05525116.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] gi|5457246|emb|CAB46934.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 314 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 22/251 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ TG + D + S TK+MTA VV S + K L +TI S+Y Sbjct: 65 VMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVLS---QPKLNLDAKVTIQMAYSDYIVS 121 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN T+ Sbjct: 122 KNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIGKMNATA 181 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQI-KGL 193 K+LGL THF + G+ +Y+T RD+ ++ +R +Y + KG Sbjct: 182 KSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTRTKKGG 241 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + NTN +G++ GA G+KTG + + +V +A + +++I +L + R Sbjct: 242 TRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASSSSAQRA 301 Query: 254 KVSASLLSMGF 264 K + L++ F Sbjct: 302 KDATKLMNYAF 312 >gi|75764312|ref|ZP_00743846.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488199|gb|EAO51881.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 19/172 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML-TTPITIS----KNAS 87 L++ N+G ++ + D + AS+TK+M+ Y+V + + K + T I +S K + Sbjct: 51 LVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKPLSGTQKIKVSEYAYKVSQ 110 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + SN + G + T+ + + + SAN +A+AE++ E FV+ MN+ SK LGL Sbjct: 111 DASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGL 170 Query: 148 SATHFMNAHGVVQ------HGHYTT--------ARDMAILSWRIKTDFPQYM 185 F+N+ G+ H TT A+D+A L+ + D+P+ + Sbjct: 171 KNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVL 222 >gi|260907390|ref|ZP_05915712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium linens BL2] Length = 408 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 23/237 (9%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS KL+TA + +KK +T E + + + ++D ++ Sbjct: 95 PASTIKLLTALALVDEFDDKKKKVTAEF----EDMEVDGTKVGLMQTNKYSIDLLFHAML 150 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+ + + K V MN + LG+S T N G+ G YTTA D+ Sbjct: 151 MSSANDAANALGRA-AGGQDKAVDLMNEKAAELGMSNTQAKNTSGLDAKGQYTTAEDLMK 209 Query: 173 LSWRIKTDFPQYM------HYFQIKG-------LEIKGKKYPNTNWAVGTFLGADGMKTG 219 L+W + D Y+ +Q G + KG + N G G G+K G Sbjct: 210 LAWAVCED--DYLMKVIGTETYQFPGGTNPETKEKFKGYEIQNHTKIAGQVDGGLGLKNG 267 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276 FT A+ + VA A + ++A +LG +D N+R + + LL F +TD K + + Sbjct: 268 FTRAAKGSYVAVAERDGHRVVATMLG-IDNNSR-QAAVDLLEWDFA-QTDPKSLQTV 321 >gi|154483607|ref|ZP_02026055.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC 27560] gi|149735517|gb|EDM51403.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC 27560] Length = 324 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 14/200 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MT V K + I S A P KKG L + L +++ Sbjct: 4 ASTTKIMTCIVALESGK-----MNQIIKASSKAVSMPKVKMYAKKGEQYYLKDLLYAMML 58 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A+ +AE + ++++F + MN +K +G T+F+ +G+ HY+TA DMA++ Sbjct: 59 ESFNDAAMIVAEGIGGSQEEFAKMMNKKAKEIGAKNTNFVTPNGLDADNHYSTAYDMALI 118 Query: 174 SWRIKTDFPQYMHYFQIKGL---EIKGKKYPNTNWAVGTFLGAD----GMKTGFTCASGF 226 T Q+ K ++ K+ N FL D G+KTGFT +G+ Sbjct: 119 G-AYATKNKQFNEITNTKSYSFTDVSAKRSITVN-NKDMFLAMDNEAIGIKTGFTGKAGY 176 Query: 227 NIVASAIQGDQSLIAVILGA 246 V + + ++ +L Sbjct: 177 CFVGAVKSNGRHFVSCVLAC 196 >gi|160915010|ref|ZP_02077223.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991] gi|158432809|gb|EDP11098.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991] Length = 330 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 27/234 (11%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 K Y ++ V+ E + AS++K+MTA + +K L S+ Sbjct: 21 KAESYCVMSGEDQQVLEEKDMHKQQSVASISKIMTAMIAI-----EKGNLQDRWQCSEAI 75 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S +K ++L++ L L+++S ND AV IAE + E+ FV MN +K +G Sbjct: 76 ETVDGSMIYLQKDQMVSLESLLYGLMLRSGNDAAVEIAEHVGGNEENFVAMMNEKAKEIG 135 Query: 147 LSATHFMNAHGVVQH--GHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +S T F N G+ + G+ +TA DMA+L S+ +K F+ +I G KY + Sbjct: 136 MSRTLFRNPTGLDEKDGGNVSTAYDMALLMSYALKN------RTFR----KIAGTKYYTS 185 Query: 204 NW---------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 W + ++ + KTGFT +G +V SA I V L D Sbjct: 186 EWNYRWKNKNRLLFSYDKSTAGKTGFTKQAGRTLVTSAKNKQLESIVVTLDMHD 239 >gi|322806098|emb|CBZ03665.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402 065] Length = 167 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 58/105 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 G T+++ LK + + S ND AVA+ E L +E+ FV++ Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKN 165 >gi|260891367|ref|ZP_05902630.1| beta-lactamase [Leptotrichia hofstadii F0254] gi|260858750|gb|EEX73250.1| beta-lactamase [Leptotrichia hofstadii F0254] Length = 492 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T G ++ E ASLTK+M V + A L I + S Sbjct: 148 TTDGKILKEKMSRQKHPIASLTKVMNILVALEQVDRGNAKLDDKICFTPEFVNMGGSWLN 207 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMN 154 K G TL + L+ I+ SAN+ A +A + K FVQ MN+ +K LG++ T + Sbjct: 208 AKAGDCYTLRDLLRAEIIYSANNAAYLVAHHIGKGNIDNFVQLMNDKAKELGMNDTRYYT 267 Query: 155 AHGVV-----QHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK--YPNTNW 205 G+ ++ +TA DM +L R D +M ++ +G+ Y N N Sbjct: 268 PAGLPSSMTNKNMDISTAYDMYLLGKRAIRDERLRAWMKESELVLQNSEGEDVVYSNRNH 327 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + F G G+KTGF +G+N++ S+ G+ +I+V LG + R Sbjct: 328 LLDQF-GIYGLKTGFHAQAGYNMIVSSKIGNLEIISVTLGNKSDDAR 373 >gi|262173460|ref|ZP_06041137.1| murein-DD-endopeptidase [Vibrio mimicus MB-451] gi|261890818|gb|EEY36805.1| murein-DD-endopeptidase [Vibrio mimicus MB-451] Length = 317 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 ++D T VI + PD AS+TKLMTA V L K M T PITI + A E Sbjct: 53 VIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVT---LDAKLPMETKLPITI-QEAREMKG 108 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +S + GS ++ + L L ++ S N A ++A K F++ MN+ +K LG+ T Sbjct: 109 VHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNSKAKALGMKNTR 168 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP-------- 201 F+ G+ + + ++ARD+ +L + +P + + K + +Y Sbjct: 169 FVEPTGLSEK-NVSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNR 226 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 227 LVFNDNWKI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLS 273 >gi|291086840|ref|ZP_06344603.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291077111|gb|EFE14475.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 516 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 22/230 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG ++ E AS TK+MT + ++ +T+S A+ P Sbjct: 159 LMDAGTGRILYEKDGKTKRPMASTTKIMTCILAL-----EEGSPEDLVTVSSYAASMPDV 213 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++G L + L L+++S ND AVA+AE + + ++F MN ++++G + T F Sbjct: 214 QLNIREGEQYYLKDLLYSLMLESHNDTAVAVAEHIAGSVEEFAVLMNQKARDIGCTDTWF 273 Query: 153 M------NAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKG------LEIKGKK 199 + A G Q H TTA D+A I+S+ I T P+ + ++ + +GK+ Sbjct: 274 VTPNGLDGADGPQQTPHSTTAEDLARIMSYCI-TQSPKREEFIELTRTASHSFADREGKR 332 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N N + A KTGFT A+G+ V + ++ + +LG Sbjct: 333 SFYCANHNAFLTMMPEALTGKTGFTGAAGYCYVGAVQDEGRTFVVSLLGC 382 >gi|323225525|gb|EGA09755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323251307|gb|EGA35179.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 195 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYV 166 Query: 143 KNLGL 147 LGL Sbjct: 167 NALGL 171 >gi|146305107|ref|YP_001185572.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina ymp] gi|145573308|gb|ABP82840.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Pseudomonas mendocina ymp] Length = 300 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D TG + + PD AS+TKLMTA VV +L PITI ++ E Sbjct: 39 LIDLKTGKELYSSNPDLRLPVASVTKLMTAMVVLDAKLPLDEVL--PITI-RDTKEMQGV 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A FV MN +K LG+ +HF Sbjct: 96 YSRVRIGSEISRRDMLHLALMSSENRAAASLAHHYPGGHVAFVAAMNAKAKALGMHNSHF 155 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTN-- 204 + G+ + + TARD+A++ + +P + + +K + NTN Sbjct: 156 VEPTGMSER-NVATARDLALM-IKATQQYPLIGQFSTDSEATVTFRKPTYTLGFRNTNAL 213 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTGFT A+G +V +S+ V+LGA + T Sbjct: 214 VRKPDWDIGMS------KTGFTNAAGRCLVMLTSMNQRSVAFVVLGAFGKYT 259 >gi|317057306|ref|YP_004105773.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] gi|315449575|gb|ADU23139.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] Length = 483 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 17/231 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----- 87 +++ ++G V+ + + PASLTKLMTA V+ L ++ L + + + Sbjct: 54 MVNMDSGEVVVDINSEKEVPPASLTKLMTAVVLLDELGGDESTLRNKMMSAGTEAFDELY 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + + + +++ + L L++ SA + A IA ++ + FV MN LGL Sbjct: 114 DTGAATADIQPNESVSAYDLLAALLIPSACEAANIIAINVGENISGFVDMMNAKVSELGL 173 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY------------FQIKGLEI 195 THF NAHG+ +Y+TA+D++ + +P + F +G I Sbjct: 174 KHTHFSNAHGLFTQQNYSTAKDISTICRYALDKYPVFEELVGSPSFTMAPTDFHPEGTYI 233 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 Y + + G+KTG T ++G + A+ + V +GA Sbjct: 234 ASTDYMINEYTKYYYAKCRGIKTGTTESAGRCFASYAVSDGVRYLVVTMGA 284 >gi|331083982|ref|ZP_08333089.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402344|gb|EGG81914.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium 6_1_63FAA] Length = 301 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD G ++ + PASLTK+MT + L + + I S Sbjct: 55 LLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQDAS 113 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 + F G +T + L ++ S + VA+AE C +EK+FV MN +K L + THF Sbjct: 114 MAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLVMKNTHF 173 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKT-DFPQYMHYF 188 N G+ HYTT D++ +L + +K DF + F Sbjct: 174 TNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAF 211 >gi|7766851|pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ + D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPAGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|160937986|ref|ZP_02085343.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC BAA-613] gi|158438980|gb|EDP16735.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC BAA-613] Length = 492 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 10/147 (6%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SE 88 ++D ++G V+ A+N + PAS+TKL+TA VV E L P+T S +A E Sbjct: 55 VMDMDSGAVLFAQNIHEQKI-PASITKLLTALVVI----ENTNDLDAPVTFSHDAIYNVE 109 Query: 89 YPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 N ++G +++ L ++++S+N A A+AE + + + FV MN LG Sbjct: 110 SGAGNKFNLEEGDVLSVRQCLYAMLLQSSNQSANALAEYVAGSRQAFVDMMNQRIAELGC 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILS 174 + +HF N G+ TTA DMAI++ Sbjct: 170 NESHFANPSGLNDDTQRTTAYDMAIIA 196 >gi|295090867|emb|CBK76974.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 528 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 36/237 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ + PAS+TKL+TA VV + + L +T S +A S Sbjct: 46 VIDADSGAVLFGQGIHNQSPPASITKLLTALVVV-----ENSSLDDMVTFSHDAVYNVES 100 Query: 93 NSTFKK----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-L 147 S KK G +++ + L LL+++S+N A A+AE + + FV+ MN LG + Sbjct: 101 GSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGCV 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NT 203 THF N G+ + +A DMA+++ K F ++I K K P N Sbjct: 161 DDTHFANPSGLNDDTQHVSAYDMALIA---KAAF-DNQQVYEIA--STKSYKLPATINNP 214 Query: 204 NWAVGT----------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N T + A KTG+T +G +V A + + LI+VIL Sbjct: 215 NGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVIL 271 >gi|262402919|ref|ZP_06079479.1| murein-DD-endopeptidase [Vibrio sp. RC586] gi|262350418|gb|EEY99551.1| murein-DD-endopeptidase [Vibrio sp. RC586] Length = 315 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 31/238 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 ++D T VI + PD AS+TKLMTA V L K M T PITI K A E Sbjct: 51 VIDLKTNEVIYSSNPDAVKPIASVTKLMTAIVT---LDAKLPMDTKLPITI-KEAKEMKG 106 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 +S K GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T Sbjct: 107 VHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNTKAKALGMKNTR 166 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKKYP-------- 201 F+ G+ + ++ARD+ +L + +P + + K + +Y Sbjct: 167 FVEPTGLSPK-NVSSARDLVVL-LKASKKYPLLGQLSSTEKKTVTFAKPRYTLDFRNTNR 224 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N NW + D KTGFT A+G +V G + + V+L +T+ K+S Sbjct: 225 LVFNDNWKI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLS 271 >gi|291563266|emb|CBL42082.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 322 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 38/224 (16%) Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALK 109 NPAS TK+MTA + K L +T+ + + +E S + G +TL+ L Sbjct: 97 NPASTTKVMTALIAL-----KYGNLDDVVTVPQESVITESGSSMAGVVPGDKLTLEQLLY 151 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ S ND A AIA + + + FV+ MN + +G + THF NA+G+ HY TA D Sbjct: 152 GLLIPSGNDAANAIAVHMGGSIEGFVKMMNEEAVQIGATGTHFANANGLTNADHYMTAYD 211 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-----------NWAVGTF--LG---- 212 + ++ F + + Y + + + I K Y + +W+V + LG Sbjct: 212 LYLM-------FHEALKYEKFRDI-IGTKTYTASYKGADGSDKTASWSVSNYYMLGKREM 263 Query: 213 ADGM-----KTGFTCASGFN-IVASAIQGDQSLIAVILGALDRN 250 DG+ KTG T A+G+ I+ G + +V++ A R+ Sbjct: 264 PDGLSVFGGKTGTTQAAGYCLIMGETDAGGKEYASVVMHADSRD 307 >gi|257791331|ref|YP_003181937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM 2243] gi|257475228|gb|ACV55548.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM 2243] Length = 467 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 27/286 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++ G V E P AS+TK+MT V +++ L +P+T+S A+ Sbjct: 68 YAMVMGADGTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLLSLDSPVTVSAAAAAVG 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--------CKTEKKFVQHMNNTS 142 S++ ++G M LD ALK L+V S ND AVAIAE++ E FV MN + Sbjct: 128 ESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPGTSDPEAVFVNAMNAKA 187 Query: 143 KNLGLSATHFMNAHGVVQHGH----YTTARDMA-ILSWRIKTD-FPQYMHYFQ--IKGLE 194 + LG + T + N HG+ + ++TA D+A ++ + + D F + I+ Sbjct: 188 QELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDTFRAAVGGGSTTIQVTR 247 Query: 195 IKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G K T+ + A G+KTG T +G + +A + + L A+++ + Sbjct: 248 ADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANKDGRELYAIVINSSSEA 307 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN--EVPNISE 294 R K + SL + + +I+Y + + + N EVP ++E Sbjct: 308 QRFKDAESLCEWVY-----QHEISYQLANSPETATMNGTEVPVVAE 348 >gi|154483287|ref|ZP_02025735.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC 27560] gi|149735797|gb|EDM51683.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC 27560] Length = 345 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 108/262 (41%), Gaps = 41/262 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYP 90 L++ N+ + E D PAS TKLMTA V +K T +TI N Sbjct: 92 LVNVNSKEIYYEKNSDAKMYPASTTKLMTALTVLQNMK-----TTDIVTIGSEINMIAAD 146 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA----ESLCKTE--------------K 132 S + F +G +T+ L+ L++ S ND A +A E++ K + Sbjct: 147 SSKAGFSQGQVVTVQELLEGLLISSGNDAAYVLAKAAGEAILKDNIANEGKTFTAAQCVE 206 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +FV MN +++ L THFM+ G YT+A D++ +I + +I G Sbjct: 207 RFVYEMNKNVRDMELENTHFMSPDGYDAADQYTSASDLS----KIAIEAYNNETIRKICG 262 Query: 193 LEIKGKKYPNTNWAVGTFLGAD-----------GMKTGFTCASGFNIVASAIQGDQSLIA 241 + + N W V T D GMKTG T +G +V+ A GD I+ Sbjct: 263 TQSEKSGTLNKTW-VSTNALLDKSGQFYYQYCVGMKTGSTGLAGKCLVSVAKNGDTECIS 321 Query: 242 VILGALDRNTRNKVSASLLSMG 263 V+L R + LL G Sbjct: 322 VVLNDSTDEQRWTDAKKLLKFG 343 >gi|311893558|dbj|BAJ25966.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054] Length = 316 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 11/186 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--YPPSNST--FKKGSTMTLDNALK 109 AS+TK+MTAYV+ + I + A+ + P ST ++G +T L+ Sbjct: 65 ASVTKVMTAYVILRGHPLEDGGQGPRIGVDAAAARESFAPGESTAQLREGQDLTERQLLE 124 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++ S N++A +A +++ FV MN + LG++ T + A G ++ +TA D Sbjct: 125 LMLLPSGNNVARLLARWDSGSQEAFVVKMNRAALELGMTRTTYTGASG-LEESTRSTAED 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGF 226 L+ R P ++ + G P T T LG D G+KTG T A+G Sbjct: 184 QIRLA-RAAMGLPVLREVVGMRETTVAG--VPGTVVNTNTLLGRDGVIGLKTGSTTAAGG 240 Query: 227 NIVASA 232 N++ +A Sbjct: 241 NLMWAA 246 >gi|318062549|ref|ZP_07981270.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG] gi|318081336|ref|ZP_07988668.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF] Length = 308 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 29/264 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKL 59 + + A A+L + P + A+ P + LLDT++G + D AS TK+ Sbjct: 13 VALTAGAVL--VAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKV 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKS 115 MTA VV L K L ITI + +Y S S + G +T+ L ++ S Sbjct: 71 MTATVV---LDTKGLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPS 127 Query: 116 ANDIAVAIAESLC--KTEKK----FVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYTTAR 168 D A A+A++ KT F+ MN +K+L + T + + G+ + +YTT R Sbjct: 128 GCDAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPR 187 Query: 169 DMAIL------SWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGF 220 D ++L S +T + K + Y NTN +G++ GA G+KTG Sbjct: 188 DASLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGT 247 Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244 SG +V +A + +++ VIL Sbjct: 248 ASGSGPCLVFAATRNGKTVAGVIL 271 >gi|118398512|ref|XP_001031584.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89285915|gb|EAR83921.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 617 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 46/257 (17%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP----ITISKNA 86 + +L+ N G ++ N ASLTK+MT YV LK +A+ +P + +SK A Sbjct: 334 WAVLNANNGQILFGNNHFIIRQMASLTKIMTLYVS---LKVIQALDISPFRTYVEVSKKA 390 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC------------------ 128 + +++ +G ++L + + +++ S ND A A+AE+L Sbjct: 391 ASMNGTSARLIEGDRLSLWDLMHGMMLPSGNDAATALAENLGVFLYYQSEEYKLQYQQNP 450 Query: 129 -----------KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-- 175 ++ F+ MN + NL L+ THF N G+V + + +TA D+A LS+ Sbjct: 451 QQFQNEKFRVKNSQGYFINQMNKYAHNLQLNNTHFANPTGLVNNFNRSTAADLAKLSYHL 510 Query: 176 ----RIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 ++K H+ QI K + + NTN + G G+KTG T A+G + Sbjct: 511 IKEEQVKKIVECKYHFAQIYMNNNKKRSVIFENTNKLLSH--GYSGLKTGITTAAGPCLS 568 Query: 230 ASAIQGDQSLIAVILGA 246 A +LI ++L + Sbjct: 569 AWYKDDQVNLIIILLNS 585 >gi|317490469|ref|ZP_07948950.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA] gi|325831447|ref|ZP_08164701.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1] gi|316910407|gb|EFV32035.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA] gi|325486701|gb|EGC89149.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1] Length = 467 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 27/286 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y ++ G V E P AS+TK+MT V +++ L +P+T+S A+ Sbjct: 68 YAMVMGADGTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLLSLDSPVTVSAAAAAVG 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--------CKTEKKFVQHMNNTS 142 S++ ++G M LD ALK L+V S ND AVAIAE++ E FV MN + Sbjct: 128 ESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPGTSDPEAVFVNAMNAKA 187 Query: 143 KNLGLSATHFMNAHGVVQHGH----YTTARDMA-ILSWRIKTD-FPQYMHYFQ--IKGLE 194 + LG + T + N HG+ + ++TA D+A ++ + + D F + I+ Sbjct: 188 QELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDTFRAAVGGGSTTIQVTR 247 Query: 195 IKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 G K T+ + A G+KTG T +G + +A + + L A+++ + Sbjct: 248 ADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANKDGRELYAIVINSSSEA 307 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN--EVPNISE 294 R K + SL + + +I+Y + + + N EVP ++E Sbjct: 308 QRFKDAESLCEWVY-----QHEISYQLANSPETATMNGTEVPVVAE 348 >gi|302520562|ref|ZP_07272904.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] gi|302429457|gb|EFL01273.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] Length = 308 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 29/264 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKL 59 + + A A+L + P + A+ P + LLDT++G + D AS TK+ Sbjct: 13 VALTAGAVL--VAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKV 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKS 115 MTA VV L K L ITI + +Y S S + G +T+ L ++ S Sbjct: 71 MTATVV---LDTKGLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPS 127 Query: 116 ANDIAVAIAESLC--KTEKK----FVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYTTAR 168 D A A+A++ KT F+ MN +K+L + T + + G+ + +YTT R Sbjct: 128 GCDAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPR 187 Query: 169 DMAIL------SWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGF 220 D ++L S +T + K + Y NTN +G++ GA G+KTG Sbjct: 188 DASLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGT 247 Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244 SG +V +A + +++ VIL Sbjct: 248 ASGSGPCLVFAATRNGKTVAGVIL 271 >gi|330831299|ref|YP_004394251.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7 [Aeromonas veronii B565] gi|328806435|gb|AEB51634.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7 [Aeromonas veronii B565] Length = 259 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 ++D TG + + ASLTKLMTA VV + K L IT+ KN Sbjct: 25 VVDVKTGKTLYQKNATKVRPIASLTKLMTALVVL----DAKQNLNQTITVDKNDLDRVKH 80 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++S + G+ +T +AL L ++ S N +A A+A FV+ MNN ++ LG+ TH Sbjct: 81 THSRIRMGTKVTRRDALHLALMSSENRMASALARHYPGGRSAFVRAMNNKARQLGMRNTH 140 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GKKYPNTN- 204 F ++ G+ + +TA+D+ L+ P + Q + E++ + NTN Sbjct: 141 FYDSTGLSTR-NVSTAQDLGKLAAAAYRQ-PLIRQFTQDENREMRFSAPAYSLMFNNTNP 198 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W V KTGFT +G +V A + L V+L ++ + T Sbjct: 199 LVKNPDWDVRLS------KTGFTDEAGRCLVMRAKPDSRELAIVLLNSVGKRT 245 >gi|228477822|ref|ZP_04062450.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius SK126] gi|228250514|gb|EEK09728.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius SK126] Length = 432 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 30/246 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ E S+TKL+TAY+V+ + + + + IS +YP Sbjct: 54 VEATTGKILYEKDATTSTGIGSITKLLTAYMVYKAVDQGDLKWNSKVEIS----DYPFEL 109 Query: 94 STFKKGSTMTLD-------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + LD L ++ SAN ++A+AE + TE KFV M K+ G Sbjct: 110 TVSAGVSNIPLDARKYTVKQLLDATLISSANSASIALAEEIGGTESKFVDMMKAQLKDWG 169 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ +NA G+ + +A+D+AI++ + ++P+ + + Sbjct: 170 ITDAKIVNASGLNNSYLGDNIYPGSKSDEENTMSAKDVAIIAQHVVKEYPEILDITKKTE 229 Query: 193 LEIKG-KKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + G K N+ + G DG+KTG T +G + VA + + S+I VI+ A Sbjct: 230 ADFDGVNKLKTFNYMLKGQPSYRKGVDGLKTGTTDLAGASFVAHSNESGMSIITVIMNAD 289 Query: 248 DRNTRN 253 + +T + Sbjct: 290 NTDTDD 295 >gi|145504310|ref|XP_001438127.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405288|emb|CAK70730.1| unnamed protein product [Paramecium tetraurelia] Length = 319 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 45/275 (16%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEYPPSNS 94 T G + P ASLTK+MTAY ++ I I + A++ +++ Sbjct: 32 TQIGDELVSKSPSLKLEVASLTKIMTAYTAIQLCEDLNLDYNEINIRIPRIATQIGGTSA 91 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIA---ESLCKTEKK------------------ 133 ++ ++L L L++ S ND A++IA S+ T++K Sbjct: 92 FLRRDDILSLVELLYALMLPSGNDAAISIALHFGSILNTQRKQKIASYITCDTIQGFYDD 151 Query: 134 --------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 FV+ MN + LG+ + F N HG+ + +TA DM +S P Sbjct: 152 TQMSNMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKANKSTASDMCRMS-SAYLKIPVLK 210 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K + ++ NTN + F +G+KTG T +G + S S+I V++G Sbjct: 211 QICNSKSFSCRNYEWFNTNQLLH-FENYNGIKTGITPNAGACLAVSYESVLGSIIVVLIG 269 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 A D+ R + +TD K IN++ +++ Sbjct: 270 AKDQKRR------------FEETD-KLINWVSREY 291 >gi|145510915|ref|XP_001441385.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408635|emb|CAK73988.1| unnamed protein product [Paramecium tetraurelia] Length = 334 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 27/208 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-------ASEYPPSNSTFKKGSTMTLDN 106 ASLTKLMT YV +++ K L + +S + A + +++ +TL + Sbjct: 96 ASLTKLMTCYVAIQLIRDLKLNLYQIVYVSYDVYILTFKAVQISGTSAFLHPYDRITLYD 155 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKK-------------FVQHMNNTSKNLGLSATHFM 153 L L++ S ND A IAE+L + K F+ MN + L ++ T F Sbjct: 156 LLHGLMLPSGNDAANVIAENLSQCVKDPVSNIALHYRIQPFISLMNQYALQLEMNDTQFY 215 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAVGT 209 N HG+ Y+ A D+AIL +I D P M K + K + NTN + Sbjct: 216 NPHGLSNDQSYSCAEDLAILCKQIIND-PMLMEIVNKKEHQATNKLINLTWKNTNRML-E 273 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237 + G G KTGFT +G +A+ + DQ Sbjct: 274 YEGYCGFKTGFTNKAG-PCLATLFKNDQ 300 >gi|313900621|ref|ZP_07834114.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] gi|312954683|gb|EFR36358.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] Length = 306 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+ V+ + + PASLTKLMT Y + + + + P +I + Sbjct: 54 YILIRQKDSKVMLKEREEEAIAPASLTKLMTVYTALQHIDDLQKTVRIPASIFPQLEKEQ 113 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + F +T ++ + ++ S D + +A SL +E FV MN ++ L L T Sbjct: 114 ASMAGFLPDEEVTYEDLIYGALLPSGADACMTLAISLYGSEDAFVAEMNAQAEKLKLKQT 173 Query: 151 HFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYF 188 F N G+ + GH ++ RD+A IL +K P++ F Sbjct: 174 RFQNCTGLDEAGHVSSVRDIAWILDEALK--LPKFAEAF 210 >gi|213417971|ref|ZP_03351051.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 113 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 6/112 (5%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPP 91 +D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+ A+ P Sbjct: 1 MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPA 60 Query: 92 SNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + K G +++ + K +I++S ND +A+A+ + +++ F+ MN Sbjct: 61 LRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMN 112 >gi|139438318|ref|ZP_01771871.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC 25986] gi|133776515|gb|EBA40335.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC 25986] Length = 469 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 24/226 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA + K + +T+S A+ S + +G +T++ AL+ L++ Sbjct: 110 ASITKVMTAILTVENCK-----MDEKVTVSNAAATVGNSTAGLLEGDELTVEQALRGLMI 164 Query: 114 KSANDIAVAIAESLCK--------TEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QH 161 S ND A+ +AE + K E FV+ MN +K LG + T F N HG+ Sbjct: 165 PSGNDAAIVLAEYVGKKIDPKTKDAEATFVKAMNERAKKLGCTGTLFENPHGLDFDEWAG 224 Query: 162 GHYTTARDMAILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT---FLGAD--- 214 ++TA D+A++ +K D + + + +E+ G + + ++ T LG D Sbjct: 225 DMHSTAHDVALMMQEAMKNDTIREVVASEDSWIEVTGADGTDHSHSMDTHNYLLGQDGNI 284 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G KTG T +G+ ++ + + VIL + + R +A+L+ Sbjct: 285 GGKTGTTDDAGYCFTSAYNRDGDEIYTVILNSTTTDQRFTDTATLV 330 >gi|331091254|ref|ZP_08340095.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404701|gb|EGG84240.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium 2_1_46FAA] Length = 235 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 12/125 (9%) Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----------KGLEIKGKK 199 THF+N +G+ GH TTARD+A++S + T +P+ Y +I KG G Sbjct: 4 THFVNCNGLDADGHLTTARDIALMSRELITKYPEVHKYTKIWQENITHETKKGTSKFG-- 61 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + + A G+KTG T + F + A+A + +LIAV++ + + R K + +L Sbjct: 62 LTNTNKFIRQYPYATGLKTGSTGKAKFCLSATAEKDKVNLIAVVMASPNAKQRVKDAVTL 121 Query: 260 LSMGF 264 ++ GF Sbjct: 122 MNYGF 126 >gi|320547987|ref|ZP_08042268.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus ATCC 9812] gi|320447333|gb|EFW88095.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus ATCC 9812] Length = 419 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 21/234 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG V+ E P AS+TK++T Y+ + + T + IS A + ++ Sbjct: 44 VEATTGKVLYEKDATTPAGIASMTKILTVYLTYKEIDNGNLSWDTKVPISDYAYDLTANS 103 Query: 94 STFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + T++ + +V SAN A+A+AE + +E FV M G++ Sbjct: 104 DASNVPMEAHEYTVEQLVNAAMVASANSAAIALAEQIGGSESNFVDMMKAQLNEWGITDA 163 Query: 151 HFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 +NA G+ + +ARD+AI++ + T++P + + Sbjct: 164 KLVNASGLNNSYLSDNIYPESSSTDENMLSARDIAIIARHLITEYPDVLKISSQTTADFD 223 Query: 197 GKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N+ + G DG+KTG T +G + VA++ + +I+V++ A Sbjct: 224 GSTMNTYNYMLKDMPYERDGVDGLKTGTTELAGASFVATSTENGMRIISVVMNA 277 >gi|294788601|ref|ZP_06753843.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella muelleri ATCC 29453] gi|294483478|gb|EFG31163.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella muelleri ATCC 29453] Length = 292 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 25/233 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 +++ NTG ++ + D + AS++KLM+A V+ + K + ITI+++ Sbjct: 56 VMNANTGKILYQKNVDTVRSIASISKLMSAMVLL----DAKLNMYEDITITEDEIDRLKG 111 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+A + FV MN +++LG++ + Sbjct: 112 TGSRLSIGTTLTRGELLHLGLMSSENRAIHALARTYPGGMGAFVAAMNAKAQSLGMNKSR 171 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTN-- 204 F G+ + +TARD++++ R + +PQ +Y Q+ K + Y NTN Sbjct: 172 FFEPTGLDPR-NVSTARDLSVM-VRAASKYPQIRSLTTSNYGQVYTSAGKTQTYKNTNAL 229 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + KTG+ +G ++V A G+Q ++ V+LG+ ++R Sbjct: 230 VREGDWDISL------QKTGYIKEAGRSMVLQARLGNQPVVIVVLGSSTSSSR 276 >gi|1149632|emb|CAA60207.1| dacF [Clostridium perfringens] Length = 96 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 51/78 (65%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 ++G T++ + L+++SAND AVA+AE + +E+KF + MN ++ LG THF+NA Sbjct: 3 LQEGDKYTVEEFVNRLLIQSANDAAVALAEDISGSEEKFRKLMNERAEELGAKNTHFVNA 62 Query: 156 HGVVQHGHYTTARDMAIL 173 G+ + H TT D+A++ Sbjct: 63 SGLFEDDHMTTPYDLALI 80 >gi|333025663|ref|ZP_08453727.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] gi|332745515|gb|EGJ75956.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] Length = 308 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 29/264 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKL 59 + + A A+L + P + A+ P + LLDT++G + D AS TK+ Sbjct: 13 VALTAGAVL--VAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKV 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKS 115 MTA VV L K L +TI + +Y S S + G +T+ L ++ S Sbjct: 71 MTATVV---LDTKGLNLDKKVTIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPS 127 Query: 116 ANDIAVAIAESLC--KTEKK----FVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYTTAR 168 D A A+A++ KT F+ MN +K+L + T + + G+ + +YTT R Sbjct: 128 GCDAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPR 187 Query: 169 DMAIL------SWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGF 220 D ++L S +T + K + Y NTN +G++ GA G+KTG Sbjct: 188 DASLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGT 247 Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244 SG +V +A + +++ VIL Sbjct: 248 ASGSGPCLVFAATRNGKTVAGVIL 271 >gi|302867861|ref|YP_003836498.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora aurantiaca ATCC 27029] gi|302570720|gb|ADL46922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora aurantiaca ATCC 27029] Length = 426 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G V+ P PAS+ KL+ A + L + + +T A E Sbjct: 91 WVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDPHREVT---VTAGDLAVEPG 147 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLS 148 S +G ++ L+++S N+ A A+A V+ MN + LG Sbjct: 148 SSAVGLVEGGRYQIETIWLGLLLRSGNEAANALARLGGGPDGLAGGVRAMNEEAHRLGAR 207 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 TH + G+ G +T+A D+A+++ D P + Y + +I KG Sbjct: 208 QTHAVTPSGLDGPGQFTSAYDLALIARACFAD-PAFRRYAATRIAQIPAQPAQRAKGFAI 266 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSASL 259 N N + + GA G KTGFT + V +A +G + L+ +LGA R + A+L Sbjct: 267 SNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVVTLLGAEVTTQRGWQQGAAL 326 Query: 260 LSMGFYNKTD 269 L GF D Sbjct: 327 LDWGFAQPRD 336 >gi|255602672|ref|XP_002537900.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis] gi|223514649|gb|EEF24482.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis] Length = 269 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 10/230 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + D G V+ E D ASLTKLMTA VV +E LT + Sbjct: 27 PSVIVYDVTRGEVLLEKNADDLRPIASLTKLMTAMVVLDKAQEMGDTLTID---EADIDR 83 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S S G+++ + L+L ++ S N A A++ S + F++ MN ++ L +S Sbjct: 84 LKHSGSRIPVGTSLKREAMLRLALMSSENRAASALSRSFPGGQPAFIEQMNLKARGLSMS 143 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN 204 THF + G + + +TARD+ L+ + +P + + E + + Y NT+ Sbjct: 144 GTHFEDPTG-LSPDNVSTARDVVKLAIE-ASHYPMISLFTTLTAYEQTIGNRTRFYHNTD 201 Query: 205 WAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 V T KTG+T +G IV +I +LGA R+ Sbjct: 202 PVVRWTDWDVQLAKTGYTREAGRCIVVDVAMPRGPVIIALLGARSARARS 251 >gi|228475540|ref|ZP_04060258.1| penicillin binding protein 4 [Staphylococcus hominis SK119] gi|314935406|ref|ZP_07842759.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis C80] gi|228270322|gb|EEK11757.1| penicillin binding protein 4 [Staphylococcus hominis SK119] gi|313656741|gb|EFS20480.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis C80] Length = 383 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 29/264 (10%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 +N P L T G ++ + +PASL+K+MT Y+ + + K L + I+ Sbjct: 43 SNYEPDGVTLTTQQGQILYNFQGNKEADPASLSKMMTLYLTLEAVHQGKLKLDDKVKITS 102 Query: 85 ---NASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S+ P S +G T+ + L + S+N A+ + E + F MN Sbjct: 103 AYDQLSKKPNLTSVPLNQGQIYTIKDLLTQAALPSSNSAAMILGEQVSGNTSTFTDKMNA 162 Query: 141 TSKNLGLSATHFMNAHGVVQH--GHY------------TTARDMAILSWRIKTDFPQYMH 186 +K + THF+N G G +T+ D+AILS + P+ ++ Sbjct: 163 QAKAFHMKHTHFVNPAGAANDLLGQQAPKKYRKDIYPKSTSEDIAILSHHLIAKHPKILN 222 Query: 187 YFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Q+ KG + NTN ++ G DG+KTG T G+NI + Q L V Sbjct: 223 ITQLSQDTQKGYTFNNTNLSIKHEPLYLKGTDGLKTG-TSDKGYNIALTNQQNHLRLNEV 281 Query: 243 ILGA---LDRNT---RNKVSASLL 260 ++ +D N RN++ ++ Sbjct: 282 VMNVAPYMDNNAKYNRNRIGNAIF 305 >gi|315505737|ref|YP_004084624.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora sp. L5] gi|315412356|gb|ADU10473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora sp. L5] Length = 419 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G V+ P PAS+ KL+ A + L + + +T A E Sbjct: 84 WVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDPHREVT---VTAGDLAVEPG 140 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLS 148 S +G ++ L+++S N+ A A+A V+ MN + LG Sbjct: 141 SSAVGLVEGGRYRIETIWLGLLLRSGNEAANALARLGGGPDGLAGGVRAMNEEAHRLGAR 200 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKY 200 TH + G+ G +T+A D+A+++ D P + Y + +I KG Sbjct: 201 QTHAVTPSGLDGPGQFTSAYDLALIARACFAD-PAFRRYATTRIAQIPAQPAQRAKGFAI 259 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSASL 259 N N + + GA G KTGFT + V +A +G + L+ +LGA R + A+L Sbjct: 260 SNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVVTLLGAEVTTQRGWQQGAAL 319 Query: 260 LSMGFYNKTD 269 L GF D Sbjct: 320 LDWGFAQPRD 329 >gi|327478643|gb|AEA81953.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri DSM 4166] Length = 312 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 L+D NT V+ + PD AS+TKLMTA VV + L +A+ P+TI ++A E Sbjct: 40 LVDLNTNEVLYSSNPDMVVPIASVTKLMTAMVVLDAKLPLDQAL---PVTI-RDAKEMQG 95 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ L L ++ S N A ++A F+Q MN ++ LG+S TH Sbjct: 96 VYSRVRIGSEISRREMLLLTLMSSENRAAASLAHHYPGGYAAFIQAMNAKARALGMSRTH 155 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + ++A D+ L I+ QY Q + K + N+ +G F Sbjct: 156 YVEPTGLSER-NVSSANDLVKL---IRASR-QYPLIQQFSTTDEKTVAFRKPNYTLG-FR 209 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V S + + V+L A + T Sbjct: 210 NTNALVRKNNWDIQLSKTGFTNAAGHCLVMSTTMKQRPVAFVVLDAFGKYT 260 >gi|19703412|ref|NP_602974.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713482|gb|AAL94273.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 368 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + K L + ISKN +Y S K Sbjct: 123 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYGGSGIPLKA 182 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN K GL + + Sbjct: 183 GQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQNEIKYHTPA 242 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK-KYPNTNWA 206 G+ Q TAR + +++ + +Y Y +I G++ GK N N Sbjct: 243 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKSTKIHNGKISIRNRNHL 298 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS +G +I V++G TR+ + S+L + Sbjct: 299 IGEN-GVYGIKTGFHKEAKYNIAVASKFEG-TDVIIVVMGGETYKTRDGIVLSVLDI 353 >gi|296328746|ref|ZP_06871260.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154081|gb|EFG94885.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 423 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + K L + ISKN +Y S K Sbjct: 178 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYGGSGIPLKA 237 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN K GL + + Sbjct: 238 GQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQNEIKYHTPA 297 Query: 157 GVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK-KYPNTNWA 206 G+ Q TAR + +++ + +Y Y +I G++ GK N N Sbjct: 298 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKSTKIHNGKISIRNRNHL 353 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS +G +I V++G TR+ + S+L + Sbjct: 354 IGEN-GVYGIKTGFHKEAKYNIAVASKFEG-IDVIIVVMGGETYKTRDGIVLSVLDI 408 >gi|14719796|pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S T +MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTHIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 250 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 251 DATKIMNYGF 260 >gi|291087522|ref|ZP_06571984.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291074901|gb|EFE12265.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 489 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 36/237 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ + PAS+ KL+TA VV + + L +T S +A S Sbjct: 7 VIDADSGAVLFGQGIHNQSPPASIAKLLTALVVV-----ENSSLDDMVTFSHDAVYNVES 61 Query: 93 NSTFKK----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-L 147 S KK G +++ + L LL+++S+N A A+AE + + FV+ MN LG + Sbjct: 62 GSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGCV 121 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NT 203 THF N G+ + +A DMA+++ K F ++I K K P N Sbjct: 122 DDTHFANPSGLNDDTQHVSAYDMALIA---KAAFDN-QQVYEIAS--TKSYKLPATINNP 175 Query: 204 NWAVGT----------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N T + A KTG+T +G +V A + + LI+VIL Sbjct: 176 NGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVIL 232 >gi|322386843|ref|ZP_08060467.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus ATCC 51100] gi|321269125|gb|EFX52061.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus ATCC 51100] Length = 425 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 38/266 (14%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--P 91 +D N+G ++ E P ++T ++TAY+V+ + K L T + IS A + P Sbjct: 34 VDANSGKILYEKEATSPLEVGAITNILTAYLVYEAIANGKLSLETEVDISDYAYQLTVNP 93 Query: 92 SNSTFK-KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + + + L ++ SAN +A+AE + +E+ FV+ M K +S Sbjct: 94 SIANLPLEARRYKVKDLLNASLLASANSATIALAEKVGGSEENFVKMMKAKLKEWNISDA 153 Query: 151 HFMNAHGV---VQHGHYTT------------------------ARDMAILSWRIKTDFPQ 183 +NA G + G T A D+A+++ + D+P+ Sbjct: 154 TIVNATGTDIRLLDGSLETTNTEEEAAENSKSKKKQETVNKFSAYDIAVIASHLIDDYPE 213 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV-GT---FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + + G + N N + G+ G G+KTG + SG + V + L Sbjct: 214 VLGITSKSHVNFAGIQLENPNLMLEGSPSFRTGVKGLKTGGSEQSGVSFVGVTSEKGMRL 273 Query: 240 IAVILGAL----DRNTRNKVSASLLS 261 I V+LG D NTR V++SL++ Sbjct: 274 ITVVLGVAQEDNDPNTRFGVTSSLMT 299 >gi|300812512|ref|ZP_07092935.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496511|gb|EFK31610.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 428 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 34/251 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PIT----ISKNA 86 +D ++G ++ P AS+TKL+T Y+ +K+ K T+ P IS+N Sbjct: 52 VDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKISQN- 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +EY SN G T+ + +++SAN A+ +A+++ + FV+ M + G Sbjct: 111 TEY--SNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFVKKMRELLTSWG 168 Query: 147 LSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + NA G+ + +A DMAI+ ++ DFP+ + I Sbjct: 169 IKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITS 228 Query: 193 LEIKG----KKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N NW + L DG+KTG T +G + + +I V Sbjct: 229 ATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITV 288 Query: 243 ILGALDRNTRN 253 +LGA N+++ Sbjct: 289 VLGAKHANSQD 299 >gi|206891061|ref|YP_002249135.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742999|gb|ACI22056.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 19/246 (7%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P +D TG V+ P PAS TKL+T V L + +TIS+ A+ Sbjct: 48 PSAVAVDAQTGKVLYGKNPHIKLPPASTTKLVTVMVALEKLDPEHK-----VTISRKAAR 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P + +G + + + L +++S N AVA+AE+ E+ FV+ MN+ + +G Sbjct: 103 TPSVSPKLVEGEVYKVRDLVYLALMRSVNSAAVALAEATAGREENFVKLMNDKVQKIGAK 162 Query: 149 ATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIK---GKKY--PN 202 T F+NA G+ G YTT D+ I+S + +P + I+ GK++ N Sbjct: 163 DTRFINASGLPGAGQYTTVYDLTKIMSHALA--YPLIKEAVHTRVYLIRSENGKEHFIQN 220 Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 TN WA +G KTG+T + V++ + + ILG +R K + L Sbjct: 221 TNQLLWAEDNMIGG---KTGYTRRARHCFVSAYKVNGRLVYTAILGDTNREQLWKDTQQL 277 Query: 260 LSMGFY 265 + Y Sbjct: 278 VEKAEY 283 >gi|261212871|ref|ZP_05927155.1| murein-DD-endopeptidase [Vibrio sp. RC341] gi|260837936|gb|EEX64613.1| murein-DD-endopeptidase [Vibrio sp. RC341] Length = 300 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 29/239 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI + PD AS+TKLMTA V A L PITI K A E Sbjct: 36 VIDLKTNEVIYSSNPDAVKPIASVTKLMTAMVTLDAKLPMDAKL--PITI-KEAKEMKGV 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + GS ++ L L ++ S N A ++A K F++ MN +K LG+ T F Sbjct: 93 HSRVRIGSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRF 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP--------- 201 + G+ + + ++ARD+ +L + +P + K + +Y Sbjct: 153 VEPTGLSEQ-NVSSARDLVLL-LKASKKYPMLGQLSSTDKKTVTFAKPRYTLDFRNTNRL 210 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N NW + D KTGFT A+G +V G + + V+L +T+ K+S + Sbjct: 211 VHNDNWRI------DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVL-----DTKGKLSPA 258 >gi|229017877|ref|ZP_04174760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|228743468|gb|EEL93585.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 272 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 26/224 (11%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 MT Y+V L + K L + I +E P T K +T+ + L L++ N Sbjct: 1 MTEYIVMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVR--DLLHALLLTGNN 58 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGH---YTTARDMAIL 173 A+A+AE + E F MN +K L LS + F+N+ G+ + TTA D A + Sbjct: 59 RSALALAEHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEI 118 Query: 174 SWRIKTDFP-------QYMHYFQIKGLEIKGKKYPNTNWAVGT------FLGADGMKTGF 220 + ++ D+P Q + F K +++ NTN + + DG+++ Sbjct: 119 AAQLIKDYPDVLNITKQTSYRFTFKDVQV-----FNTNKMIYSLNKNIKLKDVDGLQSSL 173 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + ++ V++A QGD I+V+L A + NT + LL GF Sbjct: 174 STNGNYSFVSTANQGDTRFISVVLDANEENTAFVETKKLLQYGF 217 >gi|302670789|ref|YP_003830749.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio proteoclasticus B316] gi|302395262|gb|ADL34167.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio proteoclasticus B316] Length = 387 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 91/226 (40%), Gaps = 32/226 (14%) Query: 22 IAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 I N L Y LL + + G +A NPAS+TK++T V + + Sbjct: 131 INSENVLSTYALLVNLDNGTAVASKEGTVRINPASMTKILTLLVAAEHITDLDDTFEMTQ 190 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 I + S F G +T+ + L I+ S D A+ +AE + +++ FV MN+ Sbjct: 191 EIGDFVYSHDCSAVGFSVGEKLTVRDLLYGTILPSGGDAAMCLAEYVAGSQEAFVDMMND 250 Query: 141 TSKNLGLS-ATHFMNAHGVVQHGHYTTARDMA--------------ILSWRIKTDFPQYM 185 LGLS + HF N G+ HY T DMA +LS R+ T Sbjct: 251 KLTELGLSDSAHFTNCIGIYNEDHYCTLMDMAMILKAAEENNLCHEVLSTRVYTTSNTVE 310 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGAD------GMKTGFTCASG 225 H +G+ I +NW + D G KTGF SG Sbjct: 311 H---PEGITI-------SNWFIRRIEDKDTHGEVVGAKTGFVVQSG 346 >gi|296268658|ref|YP_003651290.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora bispora DSM 43833] gi|296091445|gb|ADG87397.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora bispora DSM 43833] Length = 388 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 11/218 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D +TG V+A P + PAS K +TA + L +K+ + +P ++ S Sbjct: 70 YLVADADTGDVLAAKDPHGHYRPASTLKALTAITLIPKLDKKRVVRPSPEACNEEGSAV- 128 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 T+++ + L++ S ND A A+AE+ K + MN ++ L T Sbjct: 129 ----GLVPKPIYTVEDLFRALLMVSGNDAANALAEANGGMRKTLAE-MNQVARRLQAYDT 183 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA 206 G+ + G ++A D+A+++ R P + Y K + K N N Sbjct: 184 VAKTPSGLDRPGQRSSAYDLALIA-RAGLAMPDFRRYVSTKVAKFPAPKGHYEIANHNRL 242 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G + G G+K G+T + + V +A + ++I VI+ Sbjct: 243 LGRYQGMIGVKNGWTSKALGSFVGAATRNGHTIIVVIM 280 >gi|295116026|emb|CBL36873.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SM4/1] Length = 528 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 36/237 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++G V+ + PAS+ KL+TA VV + + L +T S +A S Sbjct: 46 VIDADSGAVLFGQGIHNQSPPASIAKLLTALVVV-----ENSSLDDMVTFSHDAVYNVES 100 Query: 93 NSTFKK----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-L 147 S KK G +++ + L LL+++S+N A A+AE + + FV+ MN LG + Sbjct: 101 GSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGCV 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NT 203 THF N G+ + +A DMA+++ K F ++I K K P N Sbjct: 161 DDTHFANPSGLNDDTQHVSAYDMALIA---KAAFDN-QQVYEIA--STKSYKLPATINNP 214 Query: 204 NWAVGT----------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N T + A KTG+T +G +V A + + LI+VIL Sbjct: 215 NGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVIL 271 >gi|188588906|ref|YP_001921735.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum E3 str. Alaska E43] gi|251779044|ref|ZP_04821964.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499187|gb|ACD52323.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum E3 str. Alaska E43] gi|243083359|gb|EES49249.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 425 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 20/223 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I D PAS TKL+T ++ +K + ++ +++A E P + Sbjct: 47 MDYETGEIIYAKDADSKRYPASTTKLLTGLLL-----AEKFEKNSELSFTQSAKEQPEYS 101 Query: 94 -------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + + G M D+ +K L++ S ND A IA+++ + F MN +K LG Sbjct: 102 LNINYMGNRMQVGDKMLADDVMKGLLLFSGNDTAYMIADNVAGSSDAFSALMNKRAKELG 161 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPNTN 204 + T+F+ A+G+ HYTTA D+++++ + D P ++K ++I G + N Sbjct: 162 ANNTNFITANGLHDPNHYTTAYDLSLIT-KAAFDNPWERETMELKESPIDINGSRIILEN 220 Query: 205 WAVGTFLGADG---MKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G LG +G KTG T A+G + A + + ++ V+L Sbjct: 221 RNLG--LGKNGNIAGKTGLTNAAGGCLAAVYEKDGRKIVGVVL 261 >gi|225026550|ref|ZP_03715742.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353] gi|224956099|gb|EEG37308.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353] Length = 491 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 27/230 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D NTG ++ D PAS+TK+MTA + K ++ IT S N E Sbjct: 85 VMDANTGTILYGKEADTKRYPASITKVMTALLAVENCK-----MSDVITYSNAAVNGIEA 139 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G+ +T++++L L++ SAN+ A AIAE + + +F + M +K LG + Sbjct: 140 GSSTAGINVGAKLTVEDSLYALMLVSANEAAAAIAEHISGSTTEFAKLMTKRAKELGCTN 199 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT------ 203 T F N HG+ HYTTA DM + I + ++ + +I G K +T Sbjct: 200 TQFKNPHGLPNEEHYTTAHDMGL----ILKEAMKHEEFRKISGTISYTLKKSDTLKDTLE 255 Query: 204 NWAVGTFLG---------ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 W L A+G KTGFT + +V A + + LI VIL Sbjct: 256 LWNHAKILRENSDYYYKYAEGAKTGFTQVALNTLVTYAKKDNVELICVIL 305 >gi|256545481|ref|ZP_05472843.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC 51170] gi|256398877|gb|EEU12492.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC 51170] Length = 407 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + + +G + + D + AS++KLMT + ++ K T + +K A + Sbjct: 45 YLIGNQESGDIFYQKNADQTYPIASMSKLMTFLLARDAIESGKISFDTKVKGTKEAEDLT 104 Query: 91 -PSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P S K+G T+ L L+V S ND A +A ++ +E F MN ++ L L Sbjct: 105 GPEYSAMGIKEGEQYTIKELLTGLMVVSGNDCANLLASTISGSEANFANEMNKKAQELNL 164 Query: 148 SATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPN 202 + + NA G+ + ++A+D+ L+ I +P + Y +I G + K + Sbjct: 165 KSQKYYNASGINTEDDKQNSSSAKDLFELTRIIVDKYPDILEYSKINGIDDDKKDIHKKS 224 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVAS------AIQGDQSLIAVILGALDRNTRNKVS 256 T G DG+KTG T +G + + + + I +++GA + RN Sbjct: 225 TIPLRDEIKGVDGLKTGTTEEAGHCLTTTIDMNKFDPKNEFRAIGIVMGAEENEFRNSAM 284 Query: 257 ASLL 260 L+ Sbjct: 285 TDLI 288 >gi|148545048|ref|YP_001272418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM 20016] gi|184154381|ref|YP_001842722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM 1112] gi|227364195|ref|ZP_03848291.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri MM2-3] gi|325683399|ref|ZP_08162915.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Lactobacillus reuteri MM4-1A] gi|148532082|gb|ABQ84081.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Lactobacillus reuteri DSM 20016] gi|183225725|dbj|BAG26242.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM 1112] gi|227070740|gb|EEI09067.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri MM2-3] gi|324977749|gb|EGC14700.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Lactobacillus reuteri MM4-1A] Length = 403 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 31/256 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + D +TG +I + D AS+TKL+T V+ +++K+ T + I+ +++ Sbjct: 35 MADASTGQIIYKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAAISND 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ K G + ++ + +VKSA+ VA+A + +F M +K +G++ Sbjct: 95 AAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKIGMT 154 Query: 149 ATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHY------- 187 T+ +N+ G+ + +ARD+AILS T +P+ + Sbjct: 155 KTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVTHYPELLQITAQKEVK 214 Query: 188 FQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 FQI ++K +K P +AV + DG+KTG + ++G ++ +I V Sbjct: 215 FQIAKDQVKTEKNLNKMLPGEQYAV-KGVTIDGLKTGTSDSAGACFASTGKYQGHRIITV 273 Query: 243 ILGALDRNTRNKVSAS 258 IL + N N+ A+ Sbjct: 274 ILHSKGSNKDNRFKAT 289 >gi|146280427|ref|YP_001170580.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri A1501] gi|145568632|gb|ABP77738.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas stutzeri A1501] Length = 390 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 L+D NT V+ + PD AS+TKLMTA VV + L +A+ P+TI ++A E Sbjct: 118 LVDLNTNEVLYSSNPDMVVPIASVTKLMTAMVVLDAKLPLDQAL---PVTI-RDAKEMQG 173 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ L L ++ S N A ++A F+Q MN ++ LG+S TH Sbjct: 174 VYSRVRIGSEISRREMLLLTLMSSENRAAASLAHHYPGGYAAFIQAMNAKARALGMSRTH 233 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + ++A D+ L I+ QY Q + K + N+ +G F Sbjct: 234 YVEPTGLSER-NVSSANDLVKL---IRASR-QYPLIQQFSTTDEKTVAFRKPNYTLG-FR 287 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V S + + V+L A + T Sbjct: 288 NTNALVRKNNWDIQLSKTGFTNAAGHCLVMSTTMKQRPVAFVVLDAFGKYT 338 >gi|7766855|pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase Length = 262 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 22/230 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG + D + S TK+MTA VV L + L +TI K S+Y +N Sbjct: 14 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 70 Query: 94 STFKK----GSTMTLDNALKLLIVKSANDIAVAIAE------SLCKTEKKFVQHMNNTSK 143 + + G +T+ L L++ S D A A+A+ + K F+ MN + Sbjct: 71 NASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAAT 130 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T RD+ ++ +R Y K I Sbjct: 131 NLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 190 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L Sbjct: 191 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL 240 >gi|295396423|ref|ZP_06806585.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium mcbrellneri ATCC 49030] gi|294970725|gb|EFG46638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium mcbrellneri ATCC 49030] Length = 403 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 23/248 (9%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 +TG V+ + D +PAS+ KL+TA + L + K IS+ ++ + Sbjct: 55 DTGEVLVSHGEDVVSSPASVQKLLTALALVDELPDVKKKHR----ISEADTQVDGTRVGL 110 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 + + ++D + +++ SAND A A+ E++ + K ++ M+ ++ LG+ +T Sbjct: 111 LRDNEYSIDLLFRSMLMSSANDSAYALGEAVGG-QHKALELMHRKARQLGMDSTVVGTTS 169 Query: 157 GVVQHGHYTTARDMAILSWR----------IKT---DFPQYMHYFQIKGLEIKGKKYPNT 203 G+ G TT D+ L+ ++T DFP Y K ++KG + N Sbjct: 170 GLDAPGQGTTIDDLLRLAHEFTKNKYLMKVVQTQTLDFPG--GYDHDKKKKVKGYQIQNH 227 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 +G GA G+K G+T + + + +A +GD + AV+L A + + +A LL+ Sbjct: 228 TRLIGLVEGAIGLKNGYTQEARGSFLGAATRGDTTYAAVVLRA--QTQSRQAAADLLNWA 285 Query: 264 FYNKTDRK 271 F N+TD K Sbjct: 286 F-NQTDPK 292 >gi|167565134|ref|ZP_02358050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis EO147] Length = 373 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 24/231 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L I ++ + + Sbjct: 126 MIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVL----DSKAPLEERIEVTDDDRDQDKF 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ D+ L + ++ S N A A++ + FV MN +++LG+ TH Sbjct: 182 TGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAMNQKARSLGMIDTH 241 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN--- 204 F N G+ ++ + +TARD+A + +P Y E+ G++ Y +TN Sbjct: 242 FENPTGLSKY-NVSTARDLAKM-VEAAYQYPLIRQYSTDLKYEVDTGRRTLYYHSTNILL 299 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 300 RDEDWDIGV------QKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHS 344 >gi|145522840|ref|XP_001447264.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124414764|emb|CAK79867.1| unnamed protein product [Paramecium tetraurelia] Length = 272 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 12/217 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MT YVV + + T +S AS + + KG +++++ L+ Sbjct: 50 ASITKIMTFYVVLNMCRTMNVHTNNTYAEVSLQASLVGGTTADLLKGDVVSIEDLFYGLM 109 Query: 113 VKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND A+ +AE+ K F+Q MNN ++ L ++ T + N HG+ + ++A D++ Sbjct: 110 LPSGNDAAMTLAENFGKNPLIYFIQEMNNKARELQMTQTTYANPHGLNNKNNVSSAYDVS 169 Query: 172 ILSWRIKTD--FPQY----MHYFQIKGLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 L ++ D F + +H+ I+ E + + NTN + + G G+KTG T Sbjct: 170 KLCNQLLKDEFFRKVVNTKIHFTTIQDEEGFTRDVIWENTNKLL--YQGFKGIKTGNTSV 227 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 +G + + +S VILG ++ R + LL Sbjct: 228 AGPCLASYYQTASRSFTIVILGCRNQEDRWSETMQLL 264 >gi|167574898|ref|ZP_02367772.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis C6786] Length = 373 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 24/231 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + KA L I ++ + + Sbjct: 126 MIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVL----DSKAPLEERIEVTDDDRDQDKF 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ D+ L + ++ S N A A++ + FV MN +++LG+ TH Sbjct: 182 TGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAMNQKARSLGMIDTH 241 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN--- 204 F N G+ ++ + +TARD+A + +P Y E+ G++ Y +TN Sbjct: 242 FENPTGLSKY-NVSTARDLAKM-VEAAYQYPLIRQYSTDLKYEVDTGRRTLYYHSTNILL 299 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 300 RDEDWDIGV------QKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHS 344 >gi|225018364|ref|ZP_03707556.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum DSM 5476] gi|224948861|gb|EEG30070.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum DSM 5476] Length = 304 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 27/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 L+D +G V+ E + PASLTK+MTA + EK + L + + E Sbjct: 57 LMDVQSGEVLLEKNSEKRAYPASLTKIMTALIAI----EKNSDLNKSVVLDSGIFERLQR 112 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + F G + L + + ++ S + AV++AE ++K+F++ MN + L L Sbjct: 113 ENASLAGFAPGEQVRLIDLIYGTLLPSGAEAAVSLAEQTAGSQKEFLKLMNQKGRELKLK 172 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----------- 197 T + N G+ TTA D+A L R P + F + + Sbjct: 173 RTRYSNVTGLHAKDQITTAADIARL-LRYALQNPTFREVFLSQSYTVPPTNRHSDGFTMH 231 Query: 198 ----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + + G LG KTGFT +G + + A D+ LI V L A Sbjct: 232 STLFSRMGDASLEKGEILGG---KTGFTDQAGLCLASLAKYQDRELILVTLDA 281 >gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] Length = 669 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G V+A P PAS+ K++ A V L L + +T + +E Sbjct: 86 WLVADMDSGAVLAAYDPHGRQRPASVIKVLLAMVAAKELP-----LDSQMTAIEEDTEQE 140 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + K G+T T++ L+ L++ S ND+A A+A L ++ MN + LG T Sbjct: 141 CTCIGLKAGNTYTVEQLLQSLVMASGNDVANALARRLGGL-PSAIRKMNALATELGARDT 199 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGKKYP--NTNW 205 + G+ G T+A D+A++ +R +P + + +E +G P N N Sbjct: 200 RAITPSGLDAPGTSTSAYDVALI-FRAAMKYPDFARAIATQRIEFPAEEGGTKPVINDNR 258 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLLSMGF 264 + ++ GA G KTGFT + V +A + + L+AV+L A + R +A LL GF Sbjct: 259 LMTSYAGALGGKTGFTDDAQHTYVGAAERDGRRLVAVLLRAQQQPLRTTDQAARLLDYGF 318 >gi|256397559|ref|YP_003119123.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila DSM 44928] gi|256363785|gb|ACU77282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila DSM 44928] Length = 410 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 18/273 (6%) Query: 18 PFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P +++ T +P + + D TG ++AE P PAS K++TA + L Sbjct: 48 PTVAVPGTPPIPPDVKAGSFVIADEATGAILAERAPHDRLRPASTLKVLTALALMPRLDP 107 Query: 72 KKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L+ P I+ A+ P +++ K G + + + + ++S ND A+A ++ Sbjct: 108 AAVHLSVPGDIASLATAEPGASAVGIKPGLSYRVSDLWNAVFLRSGND-AIATLAAMAGG 166 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 V M T++ L + T +NA G G ++A D+A+++ R P + Y + Sbjct: 167 AGPTVDLMRQTAQRLHANDTVVVNADGYDADGQVSSAYDLALMA-RAGLQDPGFRAYCSL 225 Query: 191 KGLE---IKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + + + G + N N +G + G G+K G+T + V +A + ++L+ + Sbjct: 226 QKAKFPSVNGTTFEIDNENRLLGKYPGMIGVKNGYTSLAHHTFVGAAERNGRTLVVSV-- 283 Query: 246 ALDRNTR-NKVSASLLSMGFYNKTDRKKINYII 277 D T + +A LL GF ++ ++ Sbjct: 284 -FDAGTDIYQQTAKLLDWGFAVPATAAGVDQLV 315 >gi|145300681|ref|YP_001143522.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7 [Aeromonas salmonicida subsp. salmonicida A449] gi|142853453|gb|ABO91774.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7 [Aeromonas salmonicida subsp. salmonicida A449] Length = 275 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPP 91 ++D NTG + + ASLTKLMTA VV E + L ++I +N + Sbjct: 41 VVDVNTGKTLYQKNATRVRPIASLTKLMTALVVL----EGRQSLNQTLSIDQNDRDNVKH 96 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T +AL L ++ S N +A A+A + F++ MNN ++ LG+ + Sbjct: 97 TYSRIRFGTKVTRRDALHLTLMSSENRMASALARHYPGGRQAFIRAMNNKARQLGMRNSR 156 Query: 152 FMNAHGVVQHGHYTTARDMAIL---SWR--------------IKTDFPQYMHYFQIKGLE 194 F ++ G+ + +TA+D+A L ++R ++ + P Y F Sbjct: 157 FHDSTGLSTR-NVSTAQDLAKLISAAYRQPLIRQFTQDTNRDMRFNTPAYRLMFNNTNPL 215 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +K N +W G KTGFT +G +V A + L V+L ++ + T Sbjct: 216 VK-----NPDW------GVRLSKTGFTDEAGRCLVMRAKPDSRELAIVLLNSVGKRT 261 >gi|309803471|ref|ZP_07697565.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 11V1-d] gi|308164480|gb|EFO66733.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 11V1-d] Length = 425 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 31/265 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 + D +G ++ AS++KL+T Y+ +K K T + S+ A S+ Sbjct: 67 IYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKN 126 Query: 90 PP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P SN + G T+ + +++SAN A+ +A ++ + KKFV M N + +S Sbjct: 127 PEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRNQLLDWHIS 186 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + G+ + +A DM IL + +FPQ + +I L+ Sbjct: 187 QAQIVTPSGLPNFTLGRDADSSKNADAENELSASDMGILIKHLLLEFPQVLETTRIAKLD 246 Query: 195 -IKGKK-YPNTNWAV--------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G+K + NW + DG+KTG T A+G + ++ ++ + ++ VI+ Sbjct: 247 FLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVII 306 Query: 245 GALDRNTRNK---VSASLLSMGFYN 266 GA N + V L FYN Sbjct: 307 GARHLNGNDPARFVETKKLYAYFYN 331 >gi|729291|sp|P39042|DACX_STRSK RecName: Full=D-alanyl-D-alanine carboxypeptidase; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein; Short=PBP; Flags: Precursor gi|581684|emb|CAA42591.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. K15] Length = 291 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 22/250 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---- 89 ++ TG + D + S TK+MTA VV L + L +TI K S+Y Sbjct: 43 MNNGTGTTLYTKAADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVAN 99 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTSK 143 PS + G +T+ L L++ S D A A+A+ K F+ MN + Sbjct: 100 KPSQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSQAAARVKSFIGKMNTAAT 159 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEI 195 NLGL THF + G+ +Y+T R + ++ +R Y K I Sbjct: 160 NLGLHNTHFDSFDGIGNGANYSTPRHLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSI 219 Query: 196 KG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + NTN + ++ GA G+KTG + + +V +A +G +++I +L + R Sbjct: 220 RTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARES 279 Query: 255 VSASLLSMGF 264 + +++ GF Sbjct: 280 DATKIMNYGF 289 >gi|239624021|ref|ZP_04667052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522052|gb|EEQ61918.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 482 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 27/252 (10%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D ++G V+ A+N + PAS+TKL+TA VV + L +T S +A Sbjct: 41 VMDMDSGAVLFAQNIHEQKI-PASITKLLTALVVIENCDD----LDDKVTFSHDAVYNVE 95 Query: 92 SNS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S S ++G +++ L +++++S+N A A+AE + + FV MN +LG Sbjct: 96 SGSGNKLALEEGDVLSVRECLYVMLLQSSNQAANALAEYIGGSRSGFVDMMNRKVADLGC 155 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 +HF N G+ T+A DMA+++ R Q + + I G+ + Sbjct: 156 QESHFANPSGLNDDTQRTSAYDMALIA-RAAFQNQQLLEISSTRKASIPATINNPDGRTF 214 Query: 201 P--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +V + A KTG+T +G +V A +G + IAV L + + T Sbjct: 215 SMEHKLLITEDENSVEYYPDAVAGKTGWTSQAGQTLVTYARRGGRGEIAVTLRSTQK-TH 273 Query: 253 NKVSASLLSMGF 264 + ++L GF Sbjct: 274 YSDTKTILDFGF 285 >gi|145506951|ref|XP_001439436.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406620|emb|CAK72039.1| unnamed protein product [Paramecium tetraurelia] Length = 408 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 28/266 (10%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 +I P S+ + +L+ G +++ + AS+TK+MT ++ ++ Sbjct: 146 SISPIDSVGPLVSAQSWCILNGKNGQLMSGQHQYKSRQMASITKIMTCWLALKLTQQYHL 205 Query: 75 ML-TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-----C 128 L T T+ + A + + G +++ + L L++ S ND A++I + C Sbjct: 206 DLDNTYFTVPEKAERIGGTTAQLSSGDKLSIRDLLYGLMLPSGNDAAISIQHNFELYKGC 265 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHG----VVQHGHYTTARDMAILSWR-------- 176 F+Q MN +++++G+ T + N HG + +Y++A D+ +L++ Sbjct: 266 D----FIQQMNQSAQDIGMEMTSYSNPHGMNSCLYHEDNYSSAYDIGVLTYNAMQNLQFA 321 Query: 177 --IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 +KT Y + K E K + NTN + + G G+KTG T +G +V Sbjct: 322 SIVKTKI--YFSEIEDKFGESKEIFWENTNKML--YQGFRGVKTGITKEAGPCVVEYFED 377 Query: 235 GDQSLIAVILGALDRNTRNKVSASLL 260 S I V+L + R + + LL Sbjct: 378 NQNSYIIVLLNCRSVDQRWQDTIKLL 403 >gi|94310149|ref|YP_583359.1| murein-DD-endopeptidase [Cupriavidus metallidurans CH34] gi|93354001|gb|ABF08090.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Cupriavidus metallidurans CH34] Length = 393 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 32/236 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT V+ + P AS+TKLMTA VV MLT +T +E S Sbjct: 125 VMDQNTNEVLFQKNPTAVLPIASITKLMTALVVMDARLPMDEMLT--VTEEDRDTEKH-S 181 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+ +T L L ++ S N A A+ + FV MN ++ LG+S +HF Sbjct: 182 SSRLRFGTQLTRQEMLLLALMSSENRAASALGRNYPGGLPAFVGAMNRKARELGMSDSHF 241 Query: 153 MNAHGVVQHGHYTTARDMAIL---SWR---IK----------TDFPQYMHYFQIKGLEIK 196 ++++G + + ++A D+A L ++R I+ T F + MHY L ++ Sbjct: 242 VDSNG-LSSSNVSSAMDLARLVNAAYRNPTIREYSTQPEHEVTVFGRPMHYVSTNRL-VR 299 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G NW +G KTG+ +G +V D++++ V L ++ + +R Sbjct: 300 GG-----NWDIGL------QKTGYISEAGQCLVMQTRVNDRNVVMVFLDSVGKLSR 344 >gi|225374872|ref|ZP_03752093.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM 16841] gi|225213255|gb|EEG95609.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM 16841] Length = 410 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 24/237 (10%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G ++ AS TK++T + + L +S A++ P Sbjct: 49 VLMDGGSGRILYSKNGSEALANASTTKILTCIIAL-----ENCDLEQITEVSVQAAKAPK 103 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + G + + + ++++S ND AV IAE + T + F + MN+ +K +G T Sbjct: 104 VHLGAPAGQKFRMKDLIYAMMLESFNDCAVVIAEQVAGTTEHFSKLMNDYAKKIGCKDTF 163 Query: 152 FMNAHGV-----VQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKG------LEIKGKK 199 F+ +G+ +Q H+TTA D+A I+ + IK + P+ + +I G ++ G K Sbjct: 164 FITPNGLDAQKDIQF-HHTTAEDLAQIMRYCIK-ESPKADQFLKITGEAEYTFTDVSG-K 220 Query: 200 YPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 Y + FL GA KTGFT +G+ V + Q ++ I +L N R Sbjct: 221 YAYHCYNHNAFLKMMDGAVSGKTGFTGNAGYCYVGALEQNGKTYIVALLACGWPNNR 277 >gi|104774384|ref|YP_619364.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423465|emb|CAI98355.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 428 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 34/251 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PIT----ISKNA 86 +D ++G ++ P AS+TKL+T Y+ +K+ K T+ P IS+N Sbjct: 52 VDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKISQN- 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +EY SN G T+ + +++SAN A+ +A+++ + F++ M + G Sbjct: 111 TEY--SNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSWG 168 Query: 147 LSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + NA G+ + +A DMAI+ ++ DFP+ + I Sbjct: 169 IKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITS 228 Query: 193 LEIKG----KKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N NW + L DG+KTG T +G + + +I V Sbjct: 229 ATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITV 288 Query: 243 ILGALDRNTRN 253 +LGA N+++ Sbjct: 289 VLGAKHANSQD 299 >gi|15894280|ref|NP_347629.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Clostridium acetobutylicum ATCC 824] gi|15023901|gb|AAK78969.1|AE007615_3 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Clostridium acetobutylicum ATCC 824] gi|325508407|gb|ADZ20043.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Clostridium acetobutylicum EA 2018] Length = 426 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 43/241 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG VI D PAS TKL+T+ + L E K + + S++A E P Sbjct: 39 IDAKTGEVIYAKNQDAKAFPASTTKLLTSII----LNENKKP-SDYLYYSESAKEQP--E 91 Query: 94 STFKK-------GSTMTLDNALKLLIVKSANDIAVAIAESLC--------KTEKKFVQHM 138 +F K G + D LK L++ SAND+A IA +L + +K F M Sbjct: 92 YSFDKNIHPLNVGEKLPSDVVLKSLLMYSANDMAYVIAANLINKINSPTDEVKKDFSIIM 151 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-------WRIKTDFPQYMHYFQIK 191 NN K LGL THF+ +G+ HY+TA DM+ ++ W +KT Q Sbjct: 152 NNEVKKLGLKNTHFVTPNGLHDPDHYSTAYDMSRIAKTAFSINWILKTISTQKTTVTLND 211 Query: 192 GLEIKGKKYPNTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 G + + K NTN + T +G KTG+T +G ++ + ++ +I V+ Sbjct: 212 GAKPELK---NTNKIIDPKEPVYDKTCIGG---KTGYTNEAGRCLITIFNRNNKKIIGVV 265 Query: 244 L 244 + Sbjct: 266 M 266 >gi|329116584|ref|ZP_08245301.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] gi|326906989|gb|EGE53903.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis NCFD 2020] Length = 406 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 51/249 (20%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---- 89 ++++TG ++ E + ASLTKL+T Y+ +K K + +S+ A Sbjct: 38 VESDTGKILYEKSGNKKAPIASLTKLLTIYITLKEIKAGKISWNDQVKLSEYAQSLATDP 97 Query: 90 ----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 PP S T ++ + ++ SAN A+A+AE + +E KFV M + Sbjct: 98 EISNPPLTS-----DTYSVKELVDSSLIVSANSSAIALAEYIAGSEPKFVDMMKKQVEQW 152 Query: 146 GLSATHFMNAHGV---VQHGH-----------YTTARDMAILSWRIKTDFPQYMHYFQIK 191 G++ +++ G+ + GH +A+ +AI+++ + DFP+ Sbjct: 153 GITDYLLVDSSGLPNSLLKGHTYPGSSPKDENMLSAKSLAIIAYHLIHDFPEV------- 205 Query: 192 GLEIKGKKYPNTNWAVGTFL--------------GADGMKTGFTCASGFNIVASAIQGDQ 237 L+I + P W T G DG+KTG T +G +A+A + + Sbjct: 206 -LQITSQ--PQMIWGYETLYSSNYLLPGQEMGRAGVDGLKTGTTNLAGQTYIATATENNM 262 Query: 238 SLIAVILGA 246 LI V+L A Sbjct: 263 RLITVLLHA 271 >gi|227891443|ref|ZP_04009248.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus salivarius ATCC 11741] gi|227866590|gb|EEJ74011.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus salivarius ATCC 11741] Length = 384 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 131/281 (46%), Gaps = 34/281 (12%) Query: 4 FLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LV++ +A++ S I + + + Y ++D TG V+ + D + ASLTK++T Sbjct: 10 ILVMLGIAIITGSGIMRGVRADKIDAKAAY-MIDAGTGQVLYQQNADSKYPIASLTKILT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + +K I ++K+ S+ + SN +G + T+ + ++ +++ SA+ Sbjct: 69 LAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSAD 128 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------------VQHG 162 A+A + + + F + M + G++ N G+ Q Sbjct: 129 GSTEALALADAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQEN 188 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKY--PNTNWAV-GTFLGA--- 213 ++ A+D+A++S + ++P+ + + K ++ K + Y N N+ + G++ Sbjct: 189 KFS-AKDIALVSKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNG 247 Query: 214 --DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 DG+KTGFT +G+ V + Q +I VIL A D N + Sbjct: 248 TIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQ 288 >gi|116514484|ref|YP_813390.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093799|gb|ABJ58952.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126190|gb|ADY85520.1| D-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 428 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 34/251 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PIT----ISKNA 86 +D ++G ++ P AS+TKL+T Y+ +K+ K T+ P IS+N Sbjct: 52 VDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKISQN- 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +EY SN G T+ + +++SAN A+ +A+++ + F++ M + G Sbjct: 111 TEY--SNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSWG 168 Query: 147 LSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + NA G+ + +A DMAI+ ++ DFP+ + I Sbjct: 169 IKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITS 228 Query: 193 LEIKG----KKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N NW + L DG+KTG T +G + + +I V Sbjct: 229 ATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITV 288 Query: 243 ILGALDRNTRN 253 +LGA N+++ Sbjct: 289 VLGAKHANSQD 299 >gi|256393602|ref|YP_003115166.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila DSM 44928] gi|256359828|gb|ACU73325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila DSM 44928] Length = 419 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 21/229 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D TG ++AE P PAS K++TA + L + T++ A+++ Sbjct: 58 YVVADYATGQILAEQSPHRELYPASTLKVLTADTLIPRLDPAR-------TVTPKAADFA 110 Query: 91 --PSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 P S G T ++ + + V+SAND AVA L V M +++LG Sbjct: 111 AEPDGSVVGMTAGVTYSIADLWRATFVESAND-AVAELAHLSGGLSATVAAMRQEARSLG 169 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 T ++A G Q G T+A D+AI + R P + Y +K G K T Sbjct: 170 AHDTTVLDADGYDQDGQLTSAYDLAIFA-RAGLRLPAFRAYCDLKQTTFPGPKG-TTLTL 227 Query: 207 VG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLI-AVILGALD 248 VG ++ G G+K G T +G V +A + ++I ++LG D Sbjct: 228 VGHDPMIKSYPGMIGIKGGLTTKAGHTYVGAATRDGHTVIETLMLGGTD 276 >gi|312796721|ref|YP_004029643.1| D-alanyl-D-alanine-endopeptidase [Burkholderia rhizoxinica HKI 454] gi|312168496|emb|CBW75499.1| D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) [Burkholderia rhizoxinica HKI 454] Length = 401 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG V+ + AS+TKLMTA VV + KA L +T++ +Y Sbjct: 153 MVDQHTGEVLYDKNSASVVPIASITKLMTAMVVL----DSKAPLNERLTVTDEDRDYEKG 208 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ ++ L + ++ S N A A++ F+ MN + LG++ TH Sbjct: 209 TGSRLSIGSTLSREDMLHIALMASENRAAAALSRYYPGGRPGFIVAMNRKAAELGMAQTH 268 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F NA G+ + ++ARD+ + +P + + ++ GK+ Y +TN Sbjct: 269 FQNATGLTSQ-NVSSARDLVKM-VNAAYQYPLIRQFSTDRSYDVFTGKRTLAYNSTNALV 326 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + +I V+L + + +R Sbjct: 327 RNASWDIGL------QKTGFINEAGECLVMQATIHGRPVIMVLLDSFGKYSR 372 >gi|288561558|ref|YP_003428964.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] gi|288548190|gb|ADC52072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] Length = 446 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 31/263 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 L+D +G ++ + + AS++K+M+ Y+V + + IS E Sbjct: 42 LVDATSGKILLQKNINELLKVASMSKMMSEYLVLEAINNGAISWEQVVPISDLVREISHN 101 Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 SN ++ T T+ + + + SAN +A+AE + +E+ FV MN+ + L L Sbjct: 102 NNLSNVYLRQDETYTVKELYESVAIYSANGATMALAELIAGSEESFVNMMNDKAMQLELG 161 Query: 149 ----------ATHFMNAHGVVQHGHYTTARD--------MAILSWRIKTDFPQYMHYFQI 190 +T N + + +H TT +D A L++ + D+P+ + I Sbjct: 162 EYGIDYKFVNSTGLPNQYLLGKHPEGTTEKDENELTVRATAKLAFHLLKDYPEVLETASI 221 Query: 191 KGLEIKGK-----KYPNTNWAV-GTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + K + N NW + G G DG+KTG+T +G++ +A + + LI Sbjct: 222 ERKIFKEGTEDFIQMDNWNWMLPGLVYGYPDVDGLKTGYTAQAGYSFTGTAERDNVRLIT 281 Query: 242 VILGALDRNTRNKVSASLLSMGF 264 V+ R + LL GF Sbjct: 282 VVTKTSSLEERFSETKKLLDYGF 304 >gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] Length = 414 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 16/259 (6%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L+ + N + + D +TG V+A P PASL K + A VV + L ++ ++ T Sbjct: 88 LNPPDGNTAASWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVVVTQLDPQQTIVAT- 146 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 K +E + G T+D L L++ S ND+A A +L + V MN Sbjct: 147 ----KEDAEQECTCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDSA-VAKMN 201 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIK-- 196 + +G T G+ G T+A D++ I ++ +K P++ K E Sbjct: 202 ALAAKIGALDTRAATPSGLDGPGMSTSAYDLSLIFNYAMKQ--PEFAKVVATKNFEFPPA 259 Query: 197 -GKK-YP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 GK P N N +G + G G KTGFT + V +A + + L V+L A + T+ Sbjct: 260 GGKPAIPIFNDNKLLGVYPGFLGGKTGFTDDARHTYVGAAQRKGKRLAVVMLRAEQKPTK 319 Query: 253 -NKVSASLLSMGFYNKTDR 270 +A LL GF + DR Sbjct: 320 VVDQAAKLLDYGFALEDDR 338 >gi|296332949|ref|ZP_06875407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672708|ref|YP_003864379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149913|gb|EFG90804.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410951|gb|ADM36069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 443 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 29/243 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ + + K T E Sbjct: 45 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQD 104 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+ Sbjct: 105 NSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEVVAGSETKFVEKMNAKAKELGLT 164 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ HGH +A+DMAIL+ + TD+P+ + I + Sbjct: 165 DYKFVNATGLENKDLHGHQPEGTSVDEESEVSAKDMAILADHLITDYPEILETSSIAKTK 224 Query: 195 IKGK-----KYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + PN N+ + + DG+KTG T ++G +A +I V+ Sbjct: 225 FREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAELNGMRVITVV 284 Query: 244 LGA 246 L A Sbjct: 285 LNA 287 >gi|300215120|gb|ADJ79536.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius CECT 5713] Length = 384 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 138/294 (46%), Gaps = 38/294 (12%) Query: 4 FLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LV++ +A++ S I + + + Y ++D TG V+ + + + ASLTK++T Sbjct: 10 ILVMLGIAIITGSGIMRGVEADKIDAKAAY-MIDAGTGQVLYQQNANSKYPIASLTKILT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + +K I ++K+ S+ + SN +G + T+ + ++ +++ SA+ Sbjct: 69 LAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSAD 128 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHG 162 A+A + + K F + M + G++ N G+ Q Sbjct: 129 GSTEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQEN 188 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKY--PNTNWAV-GTFLGA--- 213 ++ A+D+A++S + ++P+ + + K ++ K + Y N N+ + G++ Sbjct: 189 KFS-AKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNG 247 Query: 214 --DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR----NKVSASLLS 261 DG+KTGFT +G+ V + Q +I VIL A D N + NK+ S+++ Sbjct: 248 TIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFAETNKIIESVMN 301 >gi|330444090|ref|YP_004377076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58] gi|328807200|gb|AEB41373.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58] Length = 429 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 33/243 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------ 86 +L +TG V+ D PAS+TK+ TA + L+ +L +T++++A Sbjct: 34 ILHADTGKVLYGENLDLRIYPASMTKIATALFI---LQRHPEVLERLVTVTRDAIVSITP 90 Query: 87 -----SEYP-PSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEK 132 S Y P + G T+ L + L++ SAND A +A + C + Sbjct: 91 QAKKQSGYRNPPHWLETDGVTIQLQAKEEVSGWDLFHALLLSSANDAANVLAVACCGSVA 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMH--YF 188 K ++ +N LG THF N HG+ HYTTARD+A + +T F Q + ++ Sbjct: 151 KCMEQINLFLSELGCKHTHFNNPHGLHHPNHYTTARDLATIMHHALQETKFQQVIKTTHY 210 Query: 189 QIKGLEIKGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + ++ T ++ + A G KTG T ++G N+V +A + ++ +I V Sbjct: 211 TMAATNLSAERSLTTTNKLMLPRSMYYYPAALGGKTGTTKSAGKNLVMAAQKNNRKIITV 270 Query: 243 ILG 245 G Sbjct: 271 TTG 273 >gi|319653046|ref|ZP_08007150.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2] gi|317395265|gb|EFV75999.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2] Length = 290 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 13/175 (7%) Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSATHFMNAHGVVQ 160 M L ++ +++ S ND A +IAE L K F +++N+ ++ GL THF+N HG+ Sbjct: 1 MPLIKLVQGMLINSGNDAAWSIAEHLDGNMKAFSENLNHYLEESAGLKNTHFVNPHGLFD 60 Query: 161 HGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-------AVGTFLG 212 HYTTA D+A L+ + +K + + + K ++ GK + T + F G Sbjct: 61 ENHYTTAGDLAKLTNYALKNE--TFREIYGTKEMKWAGKSWDTTIFTHHRMLKGEVPFEG 118 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTRNKVSASLLSMGFYN 266 G KTGF + + SA L A++L A R+ N + +LL+ GF N Sbjct: 119 VTGGKTGFVDEAKQTLATSAENDSIKLTAIVLKAEFKRDIYND-TKNLLNYGFSN 172 >gi|238923987|ref|YP_002937503.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] gi|238875662|gb|ACR75369.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC 33656] Length = 384 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 16/234 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TKL+T V +K+ + +TIS+NA+ P G++ + + L +++ Sbjct: 109 ASTTKLLTCIVAL-----EKSDINDTVTISQNAASQPAVKLGLVAGNSYNMKDLLYGMML 163 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARD 169 +S ND A AIAE + + + F + MN + +G T+F+ +G+ H++TA D Sbjct: 164 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 223 Query: 170 MAIL----SWRI--KTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTC 222 + ++ +W+ T F + Q +GK + N N + KTGFT Sbjct: 224 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETEEGKMVFNNHNRLLTETDYCISGKTGFTA 283 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276 +G+ VA+ + + + +LG N +N A S+ Y +D + +Y Sbjct: 284 KAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKWADAKSLVEYAVSDAAEDSYC 337 >gi|291518495|emb|CBK73716.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens 16/4] Length = 384 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 26/259 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG + PAS TK+MTA + ++ + L TP+ +S A P Sbjct: 124 VMNATTGKALYSQGATDILEPASTTKIMTALLTIEAIEAGQISLETPVIVSPTAIAGMPL 183 Query: 93 NST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +++ + G +D L ++V S +AE + + FV MN + LG Sbjct: 184 DASHVSPRIQAGEVFNIDQLLTAMMVSSDCHSCNVLAEVVAGSVPDFVSMMNVKAAALGC 243 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-------KKY 200 + T+F N G YT A + +++ P + YF + + + Sbjct: 244 TNTNFTNPSGYPDKNMYTNAYSLYLITAN-AIKHPLFNKYFNVSNAVLPATNLCATPRVL 302 Query: 201 PNTNWAVGTFLG-----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-----LDRN 250 NT+ + G G KTG +G +V A Q ++++I+V+LGA D N Sbjct: 303 ENTDAIINPTSGYYNPYVIGGKTGTANRAGQCLVCVAKQNEKTVISVVLGAKNRKMFDGN 362 Query: 251 T---RNKVSASLLSMGFYN 266 T R + L+ MGF N Sbjct: 363 TISMRYYETNRLIDMGFTN 381 >gi|291613451|ref|YP_003523608.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans lithotrophicus ES-1] gi|291583563|gb|ADE11221.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 23/211 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA V+ + K + PI+IS ++ S S + G T+T ++L + Sbjct: 75 ASITKLMTAMVIL----DAKLPMDEPISISPEDRDHLKGSRSRMRNGMTLTRAELIQLAL 130 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+A + + MN ++ LG+++THF++ G + + +TA+D+ Sbjct: 131 MSSENRAAAALARTYPGGTPVMLAMMNAKARELGMNSTHFLDPTG-LNSANVSTAQDLVK 189 Query: 173 LSWRIKT-DFPQYMHYFQIKGLEIKGK---KYPNTN-------WAVGTFLGADGMKTGFT 221 + + ++ Q+ + +++ + ++ NTN W +G KTG+ Sbjct: 190 MVMAAQGYEYIQHCTTSHSRIVQVDSRRTLRFSNTNPLVRNSQWDIGLS------KTGYI 243 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A D+ +I V+L + + TR Sbjct: 244 SEAGRCLVMQARITDRPVIIVLLDSWGKRTR 274 >gi|225567960|ref|ZP_03776985.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM 15053] gi|225163248|gb|EEG75867.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM 15053] Length = 311 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 25/209 (11%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHV-IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P +T L L D + V A N + + PAS TK+MTA V K A L Sbjct: 48 PLADAPDTGSLSAAALFDVDKSDVDFAYNVHERLY-PASTTKIMTALVAI-----KNADL 101 Query: 77 TTPITISKNASE--YPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + +T+ +A E + T K G +TL+ L L++ S ND AVAIA+ + + + Sbjct: 102 SDVVTVGADADESSFAADEQTCGLKAGDRLTLEALLNGLLLYSGNDNAVAIADYVGGSME 161 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + MN + L + +HF+N++G+ HYTTA D+ + I + ++ + I Sbjct: 162 GFAEMMNEEAARLMATESHFLNSNGLHNEDHYTTAYDL----YLIFNECIKHEEFLDI-- 215 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 I+ K Y GADG K T Sbjct: 216 --IRAKSY------TADITGADGNKRQIT 236 >gi|291528948|emb|CBK94534.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1] Length = 371 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 22/237 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++T V +KA + +TIS+NA+ P G++ + + L +++ Sbjct: 96 ASTTKILTCIVAL-----EKADINDTVTISQNAASQPEVKLGLVAGNSYNMKDLLYGMML 150 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARD 169 +S ND A AIAE + + + F + MN + +G T+F+ +G+ H++TA D Sbjct: 151 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 210 Query: 170 MAIL----SWRI--KTDF---PQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 + ++ +W+ T F Q M Y F+ K ++ + N N + KTG Sbjct: 211 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEGQM---VFSNHNRLLKETDYCISGKTG 267 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276 FT +G+ VA+ + + + +LG N +N A S+ Y +D + +Y Sbjct: 268 FTTKAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKWADAKSLVEYAVSDAAEDSYC 324 >gi|255025482|ref|ZP_05297468.1| hypothetical protein LmonocytFSL_02553 [Listeria monocytogenes FSL J2-003] Length = 202 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEY 89 ++ +TG ++ D AS+TK+M Y++ + + K +TIS+ A + Sbjct: 33 IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDT 92 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN + G T+ + + + SAN A+AI+E + +EK+FV MN + L L Sbjct: 93 SLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGE 152 Query: 150 THFMNAHGV----VQHGHYT---------TARDMAILSWRIKTDFPQYM 185 F+NA G+ ++ G TAR MA L+ + D+P + Sbjct: 153 HQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVL 201 >gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896468|gb|EFG76118.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 413 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L KA+ P T A+E Sbjct: 103 WLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMASINALNLNKAV---PGTAEDAAAEG- 158 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + ++G T++ L L++ S ND A A+A L ++ V+ +N + LG T Sbjct: 159 -TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQA-VEKINVLAAKLGGKDT 216 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ T DFP + + G E++ Sbjct: 217 RAATPSGLDGPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDH---PGYELE- 272 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + L+AV+L TR + Sbjct: 273 ----NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLMAVLL----HGTRQPIAP 324 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + N I D Sbjct: 325 WEQAAHLLDYGFATPQGTQVGNLIEPD 351 >gi|291524730|emb|CBK90317.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629] Length = 371 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 22/237 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK++T V +KA + +TIS+NA+ P G++ + + L +++ Sbjct: 96 ASTTKILTCIVAL-----EKADINDTVTISQNAASQPEVKLGLVAGNSYNMKDLLYGMML 150 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARD 169 +S ND A AIAE + + + F + MN + +G T+F+ +G+ H++TA D Sbjct: 151 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 210 Query: 170 MAIL----SWRI--KTDF---PQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 + ++ +W+ T F Q M Y F+ K ++ + N N + KTG Sbjct: 211 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEGQM---VFSNHNRLLTETDYCISGKTG 267 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276 FT +G+ VA+ + + + +LG N +N A S+ Y +D + +Y Sbjct: 268 FTTKAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKWADAKSLVEYAVSDAAEDSYC 324 >gi|326442247|ref|ZP_08216981.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 114/274 (41%), Gaps = 29/274 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPA 54 R V++A +L P + A P L+D TG + A Sbjct: 3 RTATVVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMA 62 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKL 110 S TK+ TA V L K L +T+ ++ +Y S + K G +T+ L Sbjct: 63 STTKVATAITV---LTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHA 119 Query: 111 LIVKSANDIAVAIAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH- 163 L++ S D A A+A++ K K F+ MN + +L L T F + G+ G Sbjct: 120 LMLPSGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQN 179 Query: 164 YTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADG 215 YTT D+ L S ++ D + Y K+Y NTN +G++ G G Sbjct: 180 YTTPSDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVG 239 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 +KTG +G +V +A +G ++ I V+L DR Sbjct: 240 IKTGSGSKAGKCLVFAATRGSKTYIGVVLNGPDR 273 >gi|313890311|ref|ZP_07823943.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] gi|313121297|gb|EFR44404.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pseudoporcinus SPIN 20026] Length = 404 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 23/237 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--P 91 ++ +TG ++ + D ASLTK+MT Y+ + + + +SK A++ P Sbjct: 38 VEYSTGKILYQKNSDRKVPIASLTKIMTIYLTLKEINSGRLKWDDSVEMSKYATDLANNP 97 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K S ++ + +V S+N A+A+AE + +E KFV M + K G++ Sbjct: 98 DISNPPLYKNS-YSVKELVDSSMVVSSNSSAIALAEKISGSEAKFVDKMKDQLKTWGITD 156 Query: 150 THFMNAHGV---VQHGH-----------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + +GH +A+ +AI+S + DFP+ + + Sbjct: 157 YQLVNASGLNNSMLNGHIYPGSSKTSENRLSAKSLAIVSRHLIKDFPEILTISSQNQIYW 216 Query: 196 KGKKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 N+N + G + G DG+KTG T +G + +A+Q +I VIL A D Sbjct: 217 GNDILTNSNHLLPGNTMARNGVDGLKTGTTTKAGQTYIGTAVQDKMRVIVVILNATD 273 >gi|254390349|ref|ZP_05005566.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|294813829|ref|ZP_06772472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|197704053|gb|EDY49865.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|294326428|gb|EFG08071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 315 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 114/274 (41%), Gaps = 29/274 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPA 54 R V++A +L P + A P L+D TG + A Sbjct: 13 RTATVVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMA 72 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKL 110 S TK+ TA V L K L +T+ ++ +Y S + K G +T+ L Sbjct: 73 STTKVATAITV---LTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHA 129 Query: 111 LIVKSANDIAVAIAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH- 163 L++ S D A A+A++ K K F+ MN + +L L T F + G+ G Sbjct: 130 LMLPSGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQN 189 Query: 164 YTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADG 215 YTT D+ L S ++ D + Y K+Y NTN +G++ G G Sbjct: 190 YTTPSDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVG 249 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 +KTG +G +V +A +G ++ I V+L DR Sbjct: 250 IKTGSGSKAGKCLVFAATRGSKTYIGVVLNGPDR 283 >gi|227512066|ref|ZP_03942115.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC 11577] gi|227084718|gb|EEI20030.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC 11577] Length = 408 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 31/241 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD NT V+ + P AS++KLMT Y+V + T+ + S + + Sbjct: 147 LDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNAGLKKLGKD 206 Query: 94 STFK-----KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-----KKFVQHMNNTSK 143 STF K S D L LI +S+N+ A+A+ + + KKF+ MN +K Sbjct: 207 STFGGFKFTKNSYTVRDLYLAALI-ESSNNAAIALGQWVAGGSTPTYNKKFISMMNAQAK 265 Query: 144 NLGLSATHFMNAHGVVQ-------------HGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + LS T F++A G+ Q + + +A D+A ++ + TD+ + I Sbjct: 266 SWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYNDVLKDASI 325 Query: 191 KGLEIKGKK-YPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVI 243 + + G+K Y N +G L DG+KTG+T +G+ V + + G +I V+ Sbjct: 326 GSMSLDGQKLYNYNNLLLGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDRIITVV 385 Query: 244 L 244 L Sbjct: 386 L 386 >gi|325679044|ref|ZP_08158638.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] gi|324109168|gb|EGC03390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] Length = 359 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 21/218 (9%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 T V+ E D AS TK+M+A +V ++ L + A S+ + Sbjct: 48 TDEVLFEKNADEQLPMASTTKIMSALIVL-----EQNDLDERFIVDSQAIMTEGSSMGLQ 102 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 KG ++L + +++ S ND A A A + + FV+ MN + +GL THF+ G Sbjct: 103 KGDEVSLRDLACGMLLPSGNDAANAAAVRVAGSVDAFVELMNRRAAEMGLFDTHFVTPSG 162 Query: 158 VVQH--GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGT-- 209 + + HY+TARDMA L+ D ++ I L+ K K + P W + + Sbjct: 163 LDDYTDDHYSTARDMAKLAAEAMKD----QNFRDICSLQ-KAKVFFGDPPYDRWLINSNK 217 Query: 210 ---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G G+KTGFT + +V+S ++ LI V L Sbjct: 218 LLKISGITGIKTGFTDKARRCLVSSCMREGCELICVTL 255 >gi|242315730|ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|242138969|gb|EES25371.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] Length = 428 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 193 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 248 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 249 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 308 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 309 FVNATGLSPR-NVSTARDLSRL 329 >gi|167759042|ref|ZP_02431169.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704] gi|167663449|gb|EDS07579.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704] Length = 406 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 21/251 (8%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D ++G V+ + AS TK+MT + ++E + + S A+ P Sbjct: 46 VLMDADSGRVLFGKNENEAKPMASTTKIMTCIMALENMEEGQI-----VAASDYAASQPK 100 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + L + L L+++S ND AV +AE + + + F MN ++ +G T+ Sbjct: 101 VRLGVRGKEEYYLKDILYSLMLESHNDSAVVVAEGIAGSVEAFAGLMNQKAEEIGCKDTY 160 Query: 152 FMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------IKGKK-- 199 F+ +G+ + H TTARD+A + + P+ + +I G + + G + Sbjct: 161 FVTPNGLDAYDDGGTHSTTARDLASIMRYCIMESPKKDEFLEITGTKNYHFTNVAGDREF 220 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN---KV 255 N N + GA KTGFT +G+ V + + ++ I +L N ++ K Sbjct: 221 SCNNHNAFLDMMDGALTGKTGFTGDAGYCYVGALRKDGKTFIVALLACGWPNNKDYKWKD 280 Query: 256 SASLLSMGFYN 266 + +L+ G N Sbjct: 281 TKALMEYGLAN 291 >gi|77414953|ref|ZP_00791048.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae 515] gi|77158997|gb|EAO70213.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus agalactiae 515] Length = 369 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 32/237 (13%) Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--------PSNST 95 E + P ASLTK+MT Y+V+ + T + IS +YP SN Sbjct: 3 EKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNIS----DYPYQLTRESDASNVP 58 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 +K T+ + ++ SAN A+A+AE + TE KFV M + G+ +H +NA Sbjct: 59 LEK-RRYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNA 117 Query: 156 HGVVQH--GHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 G+ G++ +ARD+AI+++ + ++P + + Sbjct: 118 SGLNNSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMH 177 Query: 202 NTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N+ + G G+KTG T +G + +A++ + L+ VI+ A D+ ++K Sbjct: 178 SYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHA-DKADKDK 233 >gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium ammoniagenes DSM 20306] gi|295967248|gb|EFG80519.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium ammoniagenes DSM 20306] Length = 480 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 27/227 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++A P + PAS+ K++ A V L KK + T + + S Sbjct: 161 WIVSDLDSGEIVAMKDPHGRYRPASILKVLLAMVAIDELDLKKVVTGTDEDAAIDGSAV- 219 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T++ L+ L++ S ND A A+A+ L E+ + +N +++LG +T Sbjct: 220 ----GIGPGGHYTVEQLLQGLLMASGNDAAHALAQQLGGDEETLTK-INQLAQDLGARST 274 Query: 151 HFMNAHGVVQHGHYTTARDMAIL----------SWRIKTDFPQYMHYFQIKGLEIKGKKY 200 + G+ G T+A DMA+L + + TD ++ Y ++G E+ Sbjct: 275 FAASYSGLDAPGMSTSASDMALLYTEAFKNPTFARMVGTDTAEFPGYGDLEGYELG---- 330 Query: 201 PNTNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 N N G F+ DG+ KTG+T + V + + + L+AVIL Sbjct: 331 -NDN---GLFMNDPDGIGGKTGYTDDANHTFVGALDRDGRRLMAVIL 373 >gi|322381652|ref|ZP_08055618.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154392|gb|EFX46702.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 322 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 33/256 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYP 90 ++D ++G + + PAS TK+++A V +K IT+ N Sbjct: 69 VMDLDSGETLFYKNENKKMYPASTTKILSALVAL-----EKGNPNDVITVGDEVNLKTAG 123 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-----------FVQHMN 139 S++ +G + L + + +++ S ND A ++ + +K F MN Sbjct: 124 ESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVYFAGLMN 183 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIK- 196 +K +G + +HF+N+HG+ HY+T DMA+++ + F + K Sbjct: 184 KKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKNELFRNIVSKESYTTAAAKP 243 Query: 197 GKKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + Y N N + + G +G+KTGFT +G+ +V+SA + ++LI+V+ + Sbjct: 244 AQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVVF----HSG 299 Query: 252 RNKV---SASLLSMGF 264 R+ V S LL GF Sbjct: 300 RDNVWTDSQKLLDYGF 315 >gi|254190742|ref|ZP_04897249.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] gi|157938417|gb|EDO94087.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] Length = 470 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 235 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 290 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 291 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 350 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 351 FVNATGLSPR-NVSTARDLSRL 371 >gi|167901817|ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] Length = 378 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 143 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 198 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 199 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 258 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 259 FVNATGLSPR-NVSTARDLSRL 279 >gi|332524065|ref|ZP_08400317.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus str. Jelinkova 176] gi|332315329|gb|EGJ28314.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus str. Jelinkova 176] Length = 424 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 23/237 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--P 91 ++ +TG ++ + D ASLTK+MT Y+ + + + +SK A+ P Sbjct: 58 VEYSTGKILYQKNSDRKVPIASLTKIMTIYLTLKEINSGRLKWNDSVEMSKYATALANNP 117 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN K S ++ + +V S+N A+A+AE + +E KFV M N + G++ Sbjct: 118 DISNPPLYKNS-YSVKELVDSSMVVSSNSSAIALAEKIAGSEAKFVDKMKNQLETWGITD 176 Query: 150 THFMNAHGV---VQHGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +NA G+ + +GH +A+ +AI+S + D+P+ + L Sbjct: 177 YQLVNASGLNNSMLNGHIYPGSSKKSENKLSAKSIAIVSRHLIKDYPEILTISSQNQLYW 236 Query: 196 KGKKYPNTNWAV-GTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 N+N + G + G DG+KTG T +G + +A+Q +I VIL A D Sbjct: 237 GNDILTNSNHLLPGNIMGRKGVDGLKTGTTTKAGQTYIGTAVQDKMRVIVVILNATD 293 >gi|325685760|gb|EGD27835.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 428 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 34/251 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PIT----ISKNA 86 +D ++G ++ P AS+TKL+T Y+ +K+ K T+ P IS+N Sbjct: 52 VDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTSKPTAAIAKISQN- 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +EY SN T+ + + +++SAN A+ +A+++ + FV+ M + G Sbjct: 111 TEY--SNVPLTSSRAYTIKDLYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSWG 168 Query: 147 LSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + NA G+ + +A DMAI+ ++ DFP+ + I Sbjct: 169 IKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITS 228 Query: 193 LEIKG----KKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N NW + L DG+KTG T +G + + +I V Sbjct: 229 ATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITV 288 Query: 243 ILGALDRNTRN 253 +LGA N+++ Sbjct: 289 VLGAKHANSQD 299 >gi|167461903|ref|ZP_02326992.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 317 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 33/256 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYP 90 ++D ++G + + PAS TK+++A V +K IT+ N Sbjct: 64 VMDLDSGETLFYKNENKKMYPASTTKILSALVAL-----EKGNPNDVITVGDEVNLKTAG 118 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-----------FVQHMN 139 S++ +G + L + + +++ S ND A ++ + +K F MN Sbjct: 119 ESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVYFAGLMN 178 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIK- 196 +K +G + +HF+N+HG+ HY+T DMA+++ + F + K Sbjct: 179 KKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKNELFRNIVSKESYTTAAAKP 238 Query: 197 GKKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + Y N N + + G +G+KTGFT +G+ +V+SA + ++LI+V+ + Sbjct: 239 AQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVVF----HSG 294 Query: 252 RNKV---SASLLSMGF 264 R+ V S LL GF Sbjct: 295 RDNVWTDSQKLLDYGF 310 >gi|76810222|ref|YP_332685.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b] gi|76579675|gb|ABA49150.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b] Length = 452 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 217 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 272 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 273 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 332 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 333 FVNATGLSPR-NVSTARDLSRL 353 >gi|167718649|ref|ZP_02401885.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei DM98] Length = 378 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 143 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 198 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 199 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 258 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 259 FVNATGLSPR-NVSTARDLSRL 279 >gi|53724420|ref|YP_104522.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|121598323|ref|YP_992318.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124386019|ref|YP_001028989.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10229] gi|126449096|ref|YP_001081092.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10247] gi|126451732|ref|YP_001065404.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|166999947|ref|ZP_02265776.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] gi|167744606|ref|ZP_02417380.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 14] gi|167823267|ref|ZP_02454738.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 9] gi|167844811|ref|ZP_02470319.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] gi|167910041|ref|ZP_02497132.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 112] gi|217419635|ref|ZP_03451141.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226194446|ref|ZP_03790044.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|237811386|ref|YP_002895837.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gi|238563378|ref|ZP_00438972.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|254178365|ref|ZP_04885020.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|254181346|ref|ZP_04887943.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] gi|254197054|ref|ZP_04903478.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|254201603|ref|ZP_04907967.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|254206936|ref|ZP_04913287.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|254357915|ref|ZP_04974188.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|52427843|gb|AAU48436.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|121227133|gb|ABM49651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124294039|gb|ABN03308.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10229] gi|126225374|gb|ABN88914.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|126241966|gb|ABO05059.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10247] gi|147747497|gb|EDK54573.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|147752478|gb|EDK59544.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|148027042|gb|EDK85063.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|160699404|gb|EDP89374.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|169653797|gb|EDS86490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|184211884|gb|EDU08927.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] gi|217396939|gb|EEC36955.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225933531|gb|EEH29520.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|237505712|gb|ACQ98030.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gi|238520825|gb|EEP84282.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|243064065|gb|EES46251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] Length = 378 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 143 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 198 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 199 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 258 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 259 FVNATGLSPR-NVSTARDLSRL 279 >gi|53718694|ref|YP_107680.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243] gi|126441783|ref|YP_001058168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 668] gi|167814810|ref|ZP_02446490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 91] gi|254260216|ref|ZP_04951270.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gi|52209108|emb|CAH35050.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243] gi|126221276|gb|ABN84782.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] gi|254218905|gb|EET08289.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 378 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 143 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 198 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 199 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 258 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 259 FVNATGLSPR-NVSTARDLSRL 279 >gi|116493443|ref|YP_805178.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC 25745] gi|116103593|gb|ABJ68736.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC 25745] Length = 418 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 111/247 (44%), Gaps = 40/247 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D NTG ++ + AS++K++ AY++ +KE + ++I+K+ E Sbjct: 46 VDENTGQILYSKDENTVRPIASMSKIVAAYLIMKSVKEGQMHWNQKVSINKSLEEVSNNS 105 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +N T T+ N L ++ SAN +++ ++ T +KFV M +T K G+ Sbjct: 106 ELTNVPLSSNQTYTVRNLLDASLIYSANAAILSLGKAQAGTSEKFVNEMRSTVKKWGIKD 165 Query: 150 THFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG--- 192 NA G+++ + +A+DMAI+ + +FP+ ++ +I+ Sbjct: 166 AKLYNAAGLLESQVGSEKYPGTSGNIENEMSAKDMAIVISHVLKEFPEILNITKIQKTTF 225 Query: 193 ------LEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 LEI KG + + + DG+KTG + +G + A+ + Sbjct: 226 NTGKEELEITNHNELLKGAEQYEAKYQI------DGLKTGTSDKAGEDFSATGKIKGHRV 279 Query: 240 IAVILGA 246 I+V+LG+ Sbjct: 280 ISVVLGS 286 >gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp. avium ATCC 25291] Length = 367 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L KA+ P T A+E Sbjct: 57 WLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAV---PGTADDAAAEG- 112 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + ++G T++ L L++ S ND A A+A L ++ + +N + LG T Sbjct: 113 -TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAL-EKINVLAAKLGGQDT 170 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ T DFP + + G E++ Sbjct: 171 RVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDH---PGYELE- 226 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + L+AV+L TR + Sbjct: 227 ----NDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL----HGTRQPIAP 278 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + + I D Sbjct: 279 WEQAAHLLDYGFATPQGTQVGSLIAPD 305 >gi|297193840|ref|ZP_06911238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] gi|297151973|gb|EDY65162.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] Length = 454 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 10/204 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109 AS+ K MTAYV+ + IT+ K A E S + K+G T L+ Sbjct: 129 ASVAKTMTAYVILRDHPITGKQVGPKITVDKKAEEESKAKSESTAPIKEGQQFTEKQMLQ 188 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N+ A +A +E+ FV+ MN+ +K+LG++ + + + G+ T Sbjct: 189 LLMIPSGNNAARLLARWDAGSEEAFVKKMNDAAKDLGMTNSTYTDPSGLKATTVSTPLDQ 248 Query: 170 MAILSWRIKTD-FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + + ++ D F + ++ +I+ I GK N + A+ G G+KTG + +G N+ Sbjct: 249 IKLGKAVMENDVFREIVNTTRIEIPGIDGKIRNNNDRAL-LMDGVGGIKTGSSTPAGGNL 307 Query: 229 VASA---IQGD-QSLIAVILGALD 248 + SA + G+ + ++ +++GA D Sbjct: 308 LWSANAVVDGEVRRIVGIVMGAQD 331 >gi|317124333|ref|YP_004098445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Intrasporangium calvum DSM 43043] gi|315588421|gb|ADU47718.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Intrasporangium calvum DSM 43043] Length = 898 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 29/264 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPW-NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L D +TG V+A P H W PAS K +TA + L + +L T SE+ Sbjct: 129 YVLADLDTGEVLAAKSP-HAWLRPASTLKTLTALALIPRLDPARRVLAT--------SEH 179 Query: 90 PPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ T G+ + L++ SAND A +A++ E+ V MN T+ LG Sbjct: 180 EAADGTRVGILAGNRYPVSTLFDALLLSSANDAAYLLADAAGGYEQT-VSLMNETAVGLG 238 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-------- 198 T ++ G+ + G +++A D+A++ R P + Y + G Sbjct: 239 AHDTVAVDPSGLDEDGQHSSAYDLALIG-RAAMRLPTFRSYVSKRDAAFPGGTNRATGTV 297 Query: 199 ----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N +G + GA G+K G T + + +A + ++LI +G+ + ++ Sbjct: 298 YRSFQIQNINELLGRYPGAIGIKPGRTNRAQHTFIGAATRAGRTLIVTQMGSTTGDWKD- 356 Query: 255 VSASLLSMGFYNKTDRKKINYIIK 278 +A+LL GF N + +++ Sbjct: 357 -TAALLDWGFANADVASPVGVLVE 379 >gi|145478811|ref|XP_001425428.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392498|emb|CAK58030.1| unnamed protein product [Paramecium tetraurelia] Length = 313 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 39/266 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPITISKNASEY 89 + +LD TG +I AS+TK MTAYV ++ K T +++S+ A++ Sbjct: 41 WVILDAQTGRLIWGKNEHSNREIASITKSMTAYVTIKICEQLKIDPTQVTVSVSEYATQI 100 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--------------------- 128 ++S ++G ++TL + L L++ S ND A AIAE+ Sbjct: 101 GGTSSNLQEGDSLTLLDLLHGLMLPSGNDSAQAIAENFGVYLYFQSKYFQQKIDSIDNDN 160 Query: 129 ------KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 + FV MN T++ LGLS T+F N HG+ + +TA D+A L + P Sbjct: 161 NTIHVNNPAQYFVAEMNATAQKLGLSNTYFTNPHGLANRLNRSTAYDVAKLCY-YAMKLP 219 Query: 183 QYMHYFQIKGL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + + K + + K+ NTN + G G+KTG T +G + + I Sbjct: 220 LFAQIVRTKEYSCTVTNLGQTRVLKWENTNKLLEQ--GFSGIKTGVTNDAGPCLASHFIS 277 Query: 235 GDQSLIAVILGALDRNTRNKVSASLL 260 S I V+L + R S L+ Sbjct: 278 RKHSYILVVLNCNSKEQRWVDSCRLI 303 >gi|227524141|ref|ZP_03954190.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC 8290] gi|227088698|gb|EEI24010.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC 8290] Length = 393 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 41/246 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG ++ + P AS++KLMT Y+V +KK SK + Y Sbjct: 132 MNEKTGKILWSKNSNMPRAIASVSKLMTLYLV-----DKKVATAAYSWNSKVNTSYSGLK 186 Query: 94 S----------TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-----KTEKKFVQHM 138 S F K S T+ + ++ S+N+ A+A+ + + K FV+ M Sbjct: 187 SLGQSLVYGGFKFTKNS-YTVKELYEAALIDSSNNAAIALGQWVAGGGTPSYNKSFVKLM 245 Query: 139 NNTSKNLGLSATHFMNAHGVVQ-----HGHYTT--------ARDMAILSWRIKTDFPQYM 185 N +K+ L F+ A+G+ Q +G+ T+ A+D+A+++ + TD+P + Sbjct: 246 NRQAKSWNLGKATFVTANGMEQNALKGYGYSTSGGNANLVSAKDVALIARHLITDYPSTL 305 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQ-GDQS 238 Y +IK +++ G+ N N + L DG+KTGFT +G+ V + + G Sbjct: 306 TYSKIKSMKVSGQLCYNYNNLLSGRAFYQKSLDVDGLKTGFTDLAGYCFVGTGKKTGHDR 365 Query: 239 LIAVIL 244 LI V+L Sbjct: 366 LITVVL 371 >gi|134281097|ref|ZP_01767806.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|134247403|gb|EBA47488.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] Length = 478 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 243 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 298 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 299 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 358 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 359 FVNATGLSPR-NVSTARDLSRL 379 >gi|167900376|ref|ZP_02487777.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 7894] gi|167924801|ref|ZP_02511892.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei BCC215] Length = 378 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 143 VVDERTGTVLIEKNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 198 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 199 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 258 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 259 FVNATGLSPR-NVSTARDLSRL 279 >gi|297200368|ref|ZP_06917765.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] gi|297147640|gb|EDY53521.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] Length = 813 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 33/271 (12%) Query: 4 FLVIIAMAMLSNIFPF----LSIAETNK---------LPYYT----LLDTNTGHVIAENY 46 L+++A A++ ++ P LS+ + LP+ T +D N + + Sbjct: 426 ILLVVAFAIVQSVRPLPNPTLSLTAEDSYTFDGSKATLPWPTQGQGWMDVNGIGTMGDFG 485 Query: 47 PDHPWNPASLTKLMTAYVVFS--FLK--EKKAMLTTPITISKNASEYPPSNSTF---KKG 99 P S+ K MTAY+V LK E+ A +T K ST K G Sbjct: 486 KQTPVAIGSVAKAMTAYIVLKDHPLKSGEEGAKITVDALAEKEGGYNKQGESTLNTVKNG 545 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 +T A+ +++ SAN+IA +A +E F++ MN+T+K LG+ T + +A G + Sbjct: 546 DVLTQRQAIAAIMIPSANNIARLLARWDSGSEAAFIKKMNDTAKELGMKNTTYTDASG-L 604 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYPNTNWAVGTFLGADGMKT 218 + +TA D L + P M + + ++ G+K+ N N+ V + G G+KT Sbjct: 605 KESTVSTAEDQVKLGNEL-VKIPALMEITSMGQWIDPSGQKWYNYNYLV-PYTGI-GIKT 661 Query: 219 GFTCASGFNIVASA---IQGDQ-SLIAVILG 245 G T A+G N++ +A + G+ +++ ILG Sbjct: 662 GTTSAAGGNLLFAARKKVGGETVTVVGAILG 692 >gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398377|gb|AAS05998.1| hypothetical protein MAP_3448 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 394 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L KA+ P T A+E Sbjct: 84 WLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAV---PGTADDAAAEG- 139 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + ++G T++ L L++ S ND A A+A L ++ + +N + LG T Sbjct: 140 -TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAL-EKINVLAAKLGGQDT 197 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ T DFP + + G E++ Sbjct: 198 RVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDH---PGYELE- 253 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + L+AV+L TR + Sbjct: 254 ----NDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL----HGTRQPIAP 305 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + + I D Sbjct: 306 WEQAAHLLDYGFATPQGTQVGSLIAPD 332 >gi|326778216|ref|ZP_08237481.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] gi|326658549|gb|EGE43395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] Length = 299 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ TG + D + S TK+MTA VV S +K L + +T+ K S+Y Sbjct: 51 VMNDGTGKTLFTKSADTRRSTGSTTKIMTALVVLS---QKNVNLKSKVTVQKAYSDYIVK 107 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G T+ L L++ S D A A+A+ + K F+ MN T+ Sbjct: 108 KNASSARLIVGDKPTVGQLLYGLMLPSGCDAAYALADKFGSGKTRAARVKSFIGKMNATA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------ 196 K+L L THF + G+ +Y+T RD+ ++ + + + + K + K Sbjct: 168 KSLKLKNTHFDSFDGIGGGNNYSTPRDLTKIASKAMKN-ATFRSIVKTKSTKQKVTTKSG 226 Query: 197 GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G +Y NTN + ++ G G+KTG + + +V +A + +++I +L + R Sbjct: 227 GYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSSSEANRT 286 Query: 254 KVSASLLSMGF 264 + L+ GF Sbjct: 287 ADAKKLMDYGF 297 >gi|227543628|ref|ZP_03973677.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri CF48-3A] gi|300908686|ref|ZP_07126149.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Lactobacillus reuteri SD2112] gi|68160975|gb|AAY86919.1| lr1832 [Lactobacillus reuteri] gi|227186372|gb|EEI66443.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri CF48-3A] gi|300894093|gb|EFK87451.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Lactobacillus reuteri SD2112] Length = 403 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 31/256 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + D +TG +I + D AS+TKL+T V+ +++K+ T + I+ +++ Sbjct: 35 MADASTGQIIYKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAAISND 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ K G + ++ + +VKSA+ VA+A + +F M +K +G++ Sbjct: 95 AAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKIGMT 154 Query: 149 ATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHY------- 187 T+ +N+ G+ + +ARD+AILS +P+ + Sbjct: 155 KTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVKHYPELLQITAQKEVK 214 Query: 188 FQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 FQI ++K +K P +AV + DG+KTG + ++G ++ +I V Sbjct: 215 FQIAKDQVKTEKNLNKMLPGEQYAV-KGVTIDGLKTGTSDSAGACFASTGKYQGHRIITV 273 Query: 243 ILGALDRNTRNKVSAS 258 IL + N N+ A+ Sbjct: 274 ILHSKGSNKDNRFKAT 289 >gi|291562538|emb|CBL41354.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 528 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 22/180 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D +TG ++ + PAS+TK++TA VV + A LT +T S N+ E Sbjct: 46 VMDVDTGTMLFGQNSHVEYYPASITKILTALVVL-----EHADLTDTVTYSDKAMNSVEV 100 Query: 90 PPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 N + G TMT+++ L L++ S N A A+AE + + FV MN LG + Sbjct: 101 DSGNKLSLVAGDTMTVEDCLYALLLASVNQAANALAEHVAGSIPDFVDMMNAKISELGCT 160 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +HF N G+ TA DM ++ Y K LEI K +W VG Sbjct: 161 ESHFANPSGLNNDDQVVTAFDMTKIA---------AAAYSNPKLLEISSAK----SWKVG 207 >gi|269929251|ref|YP_003321572.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter thermophilus DSM 20745] gi|269788608|gb|ACZ40750.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter thermophilus DSM 20745] Length = 338 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 33/230 (14%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS--TFKK 98 V+ E D P PAS K++TA V + A L +T+ + P + S + Sbjct: 97 VLFERNADEPLPPASTAKIVTALTVL-----RHAGLEEVLTVQEEDLVDPVAESHMGLQA 151 Query: 99 GSTMTLDNALKLLIVKSANDIA----VAIAESLCKTE---KKFVQHMNNTSKNLGLSATH 151 G T+T+ + L L++ S ND A I E L + ++F MN + LG++ +H Sbjct: 152 GDTVTVHDLLVGLLLPSGNDAAKTLSRVIGERLPGDQPPVERFAAAMNAVAAELGMTGSH 211 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKK-----YPNTN 204 F++ G G TARDM +++ R P + ++ E++ G K NTN Sbjct: 212 FVDPSGDDAEGQVVTARDM-VIAARALLREPVLVSIVAMQRAEVRIGGPKARVIRLENTN 270 Query: 205 WAV---GTFLGADGMKTGFTCASGFNIVAS--AIQGDQSLIAVILGALDR 249 + G F G+KTG T +G ++ + A G Q IAVILG+ DR Sbjct: 271 QLLAQDGVF----GIKTGTTDQAGQCLLVAYRAPSGTQ--IAVILGSQDR 314 >gi|167465655|ref|ZP_02330744.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 275 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 27/160 (16%) Query: 142 SKNLGLS-ATHFMNAHGVVQH--GHYT----------TARDMAILSWRIKTDFPQYMHYF 188 +K LGLS HF+NA G+ + G Y TARD AIL+ I D PQ + + Sbjct: 2 AKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARHIVLDHPQVLEFT 61 Query: 189 QIKGLEIKG-KKYP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQ 234 + +++ K P N NW + + G DG+KTG T +G+ +A + Sbjct: 62 KTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNEAGYCFTGTAQR 121 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GD LI+V++G R + + +L GF N RK ++ Sbjct: 122 GDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLD 161 >gi|187935277|ref|YP_001886777.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str. Eklund 17B] gi|187723430|gb|ACD24651.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B str. Eklund 17B] Length = 425 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 20/223 (8%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG +I D PAS TKL+T ++ +K + I+ +++A E P + Sbjct: 47 MDYETGEIIYAKDADSKRYPASTTKLLTGLLL-----AEKFEKNSEISFTQSAKEQPEYS 101 Query: 94 -------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + + G M D+ +K L++ S ND A IA+++ + F + MN +K LG Sbjct: 102 LNINYMGNKMQVGDKMLADDVMKGLLLFSGNDTAYMIADNVAGSANAFSELMNKKAKELG 161 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYPNTN 204 + ++F+ A+G+ HYTTA D+++++ + + P ++K ++I G + N Sbjct: 162 ANNSNFITANGLHDPNHYTTAYDLSLIT-KAAFENPWEKETMELKEAPIDINGSRIILEN 220 Query: 205 WAVGTFLGADG---MKTGFTCASGFNIVASAIQGDQSLIAVIL 244 +G LG +G KTG T A+G + A + + +I V+L Sbjct: 221 RNLG--LGKNGNIAGKTGSTNAAGGCLAAVYEKDGRKIIGVVL 261 >gi|145517883|ref|XP_001444819.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124412252|emb|CAK77422.1| unnamed protein product [Paramecium tetraurelia] Length = 397 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 26/261 (9%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 +I P S+A + +++ G ++ AS+TK+MT ++ ++ + Sbjct: 143 SITPLESVAPLVSAQSWCVINGKNGQLMGGYNQYKSRQMASITKIMTCWLALKLTQQFQL 202 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-----CK 129 L A + + G +++ + L L++ S ND A+++ + C Sbjct: 203 DLDNTYFT---AERIGGTTAQLSSGDKLSIRDLLYGLMLPSGNDAAISLQHNFELYKGCD 259 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR----------IKT 179 F+Q MN ++++G+ T + N HG+ +Y++A D+ IL++ +KT Sbjct: 260 ----FIQQMNQNAQDIGMELTSYANPHGLYHEANYSSAYDIGILTYHAMQNLQFASIVKT 315 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 Y + K E K + NTN + + G G+KTG T +G +V + S Sbjct: 316 KI--YFSEIEDKFGESKEIFWENTNRML--YQGFRGVKTGITKEAGPCVVEYFEDNENSY 371 Query: 240 IAVILGALDRNTRNKVSASLL 260 I V+L + R + + LL Sbjct: 372 IIVLLNCRSVDLRWQDAIKLL 392 >gi|145505585|ref|XP_001438759.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405931|emb|CAK71362.1| unnamed protein product [Paramecium tetraurelia] Length = 360 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 31/269 (11%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + PF ++ + + + + NTG I + AS+TK++T + +FL + K Sbjct: 101 LIPFFKVSAQS----WAIFNGNTGEYITGYNQNKCRQIASITKIVTCIIENAFLFQIKL- 155 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL---CKTEK 132 I +K A + +++ KG ++ L + L L++ S ND AV ++ + Sbjct: 156 ----INQTKQAQKISGTSAGLLKGDSIFLRDLLYGLMLPSGNDAAVTLSYNFQLYSLEND 211 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW------------RIKTD 180 F++ MN + LGLS T F N HG+ +++TA D+ ++ R ++ Sbjct: 212 HFLKEMNRFVQALGLSNTQFSNVHGLCNENNFSTAYDVGKFTYESLQNEQFQKIVRTQSY 271 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 F + + Q E+ + NTN + G G+KTG T +G ++V S I Sbjct: 272 FCETPNQLQNTSREL---YWENTNKLLQQ--GFKGVKTGITKEAGPSVVEYFQDSTNSYI 326 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD 269 V+L ++ N+ + +L + + K D Sbjct: 327 IVLLNC--SSSENRWTDALRLLQWIQKQD 353 >gi|309807067|ref|ZP_07701047.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 03V1-b] gi|312870869|ref|ZP_07730974.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 3008A-a] gi|308166563|gb|EFO68762.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 03V1-b] gi|311093559|gb|EFQ51898.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 3008A-a] Length = 385 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 48 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 107 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 108 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 167 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKK-YPNTNWAV------ 207 + +A DM IL + +FPQ + +I L+ + G+K + NW + Sbjct: 168 NKNADAENELSASDMGILIKHLLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLS 227 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + +I VI+GA N + V L Sbjct: 228 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIITVIIGARHLNGNDPARFVETKKLYA 287 Query: 263 GFYN 266 FYN Sbjct: 288 YFYN 291 >gi|167751174|ref|ZP_02423301.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702] gi|167655889|gb|EDS00019.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702] Length = 466 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 21/234 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--KAMLTTPITISKNASEYP 90 +++T+TG V+ + PAS TK+MT + L E + P + E P Sbjct: 50 MVNTDTGDVVFKKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDP 109 Query: 91 ----PSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKN 144 PSN+ + +T + L L++ SA + A +A ++ KF+ MN +K Sbjct: 110 NYSDPSNAAIEPLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKE 169 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG + T+F+NAHG+ +YTTA D+ ++ FP + E+ + Sbjct: 170 LGCTGTNFVNAHGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSG 229 Query: 205 WAVGTFLG------------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +++ + + A G KTG T +G +V SA + + I V LGA Sbjct: 230 YSIYSTISLLRPGSVYEYEYAYGTKTGTTDEAGRCLV-SAAKNQYNYILVTLGA 282 >gi|323483957|ref|ZP_08089330.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323693446|ref|ZP_08107657.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] gi|323402673|gb|EGA94998.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323502501|gb|EGB18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] Length = 431 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 24/231 (10%) Query: 33 LLDTNTGHVI--AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L+D +TG ++ E P AS TK+MT + ++ + IS A+ P Sbjct: 75 LMDASTGRILYGKEETIKRPM--ASTTKIMTCILAL-----EQGNPEDMVEISSYAASMP 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G L + L L+++S ND AVA+AE + T + F + MN ++++G + T Sbjct: 128 DVQLNIRAGEKYRLQDLLYSLMLESHNDSAVAVAEHIGGTVEGFAEMMNQKARDIGCTDT 187 Query: 151 HFMNAHGV------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GK 198 F+ +G+ H TTA D+A + P+ + +I + GK Sbjct: 188 CFVTPNGLDGTRKADGEPHSTTAADLARIMRYCVEQSPKSREFLEITRTASRTITDESGK 247 Query: 199 K---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + N N + A KTGFT +G+ VA+ + D+ +LG Sbjct: 248 RSFYLGNHNALLSMMPEALSGKTGFTGNAGYCYVAALKKDDKEFTVALLGC 298 >gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] gi|118167574|gb|ABK68471.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] Length = 419 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L KA+ P T A+E Sbjct: 109 WLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAV---PGTADDAAAEG- 164 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + ++G T++ L L++ S ND A A+A L ++ + +N + LG T Sbjct: 165 -TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAL-EKINVLAAKLGGQDT 222 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ T DFP + + G E++ Sbjct: 223 RVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDH---PGYELE- 278 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + L+AV+L TR + Sbjct: 279 ----NDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL----HGTRQPIAP 330 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + + I D Sbjct: 331 WEQAAHLLDYGFATPQGTQVGSLIAPD 357 >gi|291556702|emb|CBL33819.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 466 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 21/234 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--KAMLTTPITISKNASEYP 90 +++T+TG V+ + PAS TK+MT + L E + P + E P Sbjct: 50 MVNTDTGDVVFKKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDP 109 Query: 91 ----PSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKN 144 PSN+ + +T + L L++ SA + A +A ++ KF+ MN +K Sbjct: 110 NYSDPSNAAIEPLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKE 169 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG + T+F+NAHG+ +YTTA D+ ++ FP + E+ + Sbjct: 170 LGCTGTNFVNAHGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSG 229 Query: 205 WAVGTFLG------------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +++ + + A G KTG T +G +V SA + + I V LGA Sbjct: 230 YSIYSTISLLRPGSVYEYEYAYGTKTGTTDEAGRCLV-SAAKNQYNYILVTLGA 282 >gi|116334395|ref|YP_795922.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] gi|116099742|gb|ABJ64891.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] Length = 307 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 25/243 (10%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-----ASEYPP 91 +TG V+ + AS++K+MT Y+ + + K++ + I+ + Sbjct: 51 DTGKVVWSKAGNTARPIASVSKIMTLYLTLAKVNGKQSNWNHKVKITSRGLVSMSRSAAC 110 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 FK G T+ + S+N+ A+A+ + + + KF++ MN +K L H Sbjct: 111 GGFKFKLGHKYTVKQLYDAAFLDSSNNAAIALGQWVSGSNAKFIKKMNAQAKAWKLGKAH 170 Query: 152 FMNAHGV----VQHGHY---------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 F++A G+ +Q+ Y +A+D+A+++ + TD+P+ + Q ++ G+ Sbjct: 171 FVSASGLENSDLQYYGYRYGTANANMVSAKDVALIARHLITDYPRVLTDGQAGSKKVDGQ 230 Query: 199 -KYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNT 251 Y N G L DG+KTG+T +G+ V + + G +I V+L D T Sbjct: 231 LCYNYNNLLAGRKYYQASLNVDGLKTGYTPLAGYCFVGTGQMAGKHRIITVVLHDEDEFT 290 Query: 252 RNK 254 + Sbjct: 291 ETR 293 >gi|330467947|ref|YP_004405690.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora maris AB-18-032] gi|328810918|gb|AEB45090.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora maris AB-18-032] Length = 420 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 19/252 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+ P PAS+ KL+ A + L + +TI+ + Sbjct: 93 WVVADLDTGEVLGGCGPHEYATPASVQKLLLAATMLPRLDPAEV-----VTITAGDLDIE 147 Query: 91 PSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLG 146 P +S G ++ L+++S N++A A+A ++ MN ++ LG Sbjct: 148 PGSSAVGLVAGGRYRIETLWLGLLLRSGNEVANALARLGGGADGMAGGLRAMNEQARQLG 207 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGK 198 TH G+ G +T+A D+A+++ R D + Y + +I KG Sbjct: 208 AYQTHAATPSGLDGPGQFTSAYDLALIA-RACFDDEHFRRYVATREADIPAQPKQRAKGF 266 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSA 257 N N + + GA G KTG+T + V +A + + L+ +LGA + R + A Sbjct: 267 TIDNDNQLLYRYPGALGGKTGYTDLARHTYVGAAERNGRRLVVTLLGADVIDQRGWQQGA 326 Query: 258 SLLSMGFYNKTD 269 +LL GF D Sbjct: 327 ALLDWGFALPRD 338 >gi|291531742|emb|CBK97327.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 466 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 21/234 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK--AMLTTPITISKNASEYP 90 +++T+TG V+ + PAS TK+MT + L E + P + E P Sbjct: 50 MVNTDTGDVVYKKNESKKMYPASTTKIMTCIIALEHLSEASLSKKVEVPYDCFNDFYEDP 109 Query: 91 ----PSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKN 144 PSN+ + +T + L L++ SA + A +A ++ KF+ MN +K Sbjct: 110 NYSDPSNAAIEPLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKE 169 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN- 202 LG + T+F+NAHG+ +YTTA D+ ++ FP + E+ K P+ Sbjct: 170 LGCTGTNFVNAHGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPDG 229 Query: 203 ----------TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +V + A G KTG T +G +V SA + + I V LGA Sbjct: 230 YSIYSTISLLRPGSVYEYEYAYGTKTGTTDEAGRCLV-SAAKNQYNYILVTLGA 282 >gi|321313677|ref|YP_004205964.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|320019951|gb|ADV94937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 443 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 29/243 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ + + K T E Sbjct: 45 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQD 104 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+ Sbjct: 105 NSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLT 164 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ HGH +A+DMAIL+ + TD+P+ + I + Sbjct: 165 DYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTK 224 Query: 195 IKGK-----KYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + PN N+ + + DG+KTG T ++G +A + +I V+ Sbjct: 225 FREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVV 284 Query: 244 LGA 246 L A Sbjct: 285 LNA 287 >gi|319942241|ref|ZP_08016556.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis 3_1_45B] gi|319804114|gb|EFW01014.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis 3_1_45B] Length = 372 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D +TG + D AS+TKLMTA V+ E L + I++ ++ Sbjct: 125 MDQDTGEELVVKNADVELPIASVTKLMTALVI----AESDVDLDEKVRITREDYVRSTAH 180 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 S G +T ++ LK ++ S N A A+A + K FV MN + +G++ + F Sbjct: 181 SKLISGMRLTRESLLKAALMSSDNRAAAALARTYPGGRKAFVAKMNERAAAIGMTNSFFA 240 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPN---T 203 + G+ H +TARD+ L + Y H +I+ G++ N T Sbjct: 241 DPTGLDNRNH-STARDLGKLVAAV------YQHQ-EIRDASTTSMARISTGRRQVNLATT 292 Query: 204 NWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244 N +G G+ KTGFT A+G +V + G++ L+ V+L Sbjct: 293 NRLIGDPSWRIGIQKTGFTTAAGRCMVVQSDVGERRLVMVVL 334 >gi|320009813|gb|ADW04663.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces flavogriseus ATCC 33331] Length = 299 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 25/252 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ T + D + S TK+MTA VV L +K L +T+ K S+Y Sbjct: 51 VMNNGTAKTLYGKSADTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTVQKAYSDYIVK 107 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN ++ Sbjct: 108 NTASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNASA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIK----- 196 K+LGL THF + G+ +Y+T RD+ I S +K + + K + K Sbjct: 168 KSLGLKNTHFDSFDGIGGGSNYSTPRDLTKIASSAMKNS--TFRAIVKTKSTKQKVTTKT 225 Query: 197 -GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G +Y NTN +G++ G G+KTG + + +V +A + +++I +L + TR Sbjct: 226 GGYRYMSWANTNAMLGSYSGMIGVKTGSGPTAKYCLVFAATRNGKTVIGTVLTSTSATTR 285 Query: 253 NKVSASLLSMGF 264 + LL GF Sbjct: 286 TADAKKLLDYGF 297 >gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] Length = 403 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 21/259 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++TA + L K + P T A E Sbjct: 98 WLVADLDSGDVIAARDPHGRHRPASIIKVLTAMQAINDLPLHKVI---PGTEEDAAQEG- 153 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G ++++ L L++ S ND A A+A + + +N + LG T Sbjct: 154 -TKVGVGPGGFYSINDLLHGLLMYSGNDAAHALAMQMGGMQTAL-NKINALAGKLGARDT 211 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YP--NTNW 205 G+ G T+A D+ + +R P + + G+ YP N N Sbjct: 212 RVATPSGLDGPGMSTSAYDIGLF-YRYAWQNPVFTDIVATRSSNFPGRDGAGYPIENDNK 270 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----SASLL 260 + + GA G KTGFT +G V +A + + L+AV+L R TR + +A LL Sbjct: 271 LLANYPGALGGKTGFTDDAGQTFVGAATRDGRRLVAVLL----RGTRQPIAPWEQAARLL 326 Query: 261 SMGFYNKTDRKKINYIIKD 279 GF K + I D Sbjct: 327 DYGFATAPGTKVGSLIEPD 345 >gi|254556248|ref|YP_003062665.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum JDM1] gi|300768351|ref|ZP_07078254.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|254045175|gb|ACT61968.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum JDM1] gi|300494078|gb|EFK29243.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 412 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 34/275 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D ASL+KLMT Y+V ++ + T + I KN + S Sbjct: 44 VMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEHGQIKWTDAVPIRKNVRKMATS 103 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + T T+ +V S+N A+A+ E + + KF++ MN + L Sbjct: 104 ATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYVAGSNDKFIKLMNQQASKWHLD 163 Query: 149 ATHFMNAHGV----------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 A+ F++A G+ Q + +AR + ++ + +P + + Sbjct: 164 AS-FISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVTTIAQHLIDAYPDVIQVANQRS 222 Query: 193 LEIKGKKYPNTNWAVGTFLGA---------DGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++I P + V GA DG+KTG+T +G +VA+ Q +IA Sbjct: 223 VKIHKYTVPTS---VEILKGAEYYDPRVPVDGLKTGYTNQAGACLVATYRQNGHRMIATT 279 Query: 244 L-GALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 L GA N + L + Y + K INY I Sbjct: 280 LGGAWQFTANNNLRLMLKTTEQYKQVVPKSINYQI 314 >gi|308180223|ref|YP_003924351.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045714|gb|ADN98257.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 412 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 34/275 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D ASL+KLMT Y+V ++ + T + I KN + S Sbjct: 44 VMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEHGQIKWTDAVPIRKNVRKMATS 103 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + T T+ +V S+N A+A+ E + + KF++ MN + L Sbjct: 104 ATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYVAGSNDKFIKLMNQQAAKWHLD 163 Query: 149 ATHFMNAHGV----------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 A+ F++A G+ Q + +AR + ++ + +P + + Sbjct: 164 AS-FISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVTTIAQHLIDAYPDVIQVANQRS 222 Query: 193 LEIKGKKYPNTNWAVGTFLGA---------DGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++I P + V GA DG+KTG+T +G +VA+ Q +IA Sbjct: 223 VKIHKYTVPTS---VEILKGAEYYDPRVPVDGLKTGYTNQAGACLVATYRQNGHRMIATT 279 Query: 244 L-GALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 L GA N + L + Y + K INY I Sbjct: 280 LGGAWQFTANNNLRLMLKTTEQYKQVVPKSINYQI 314 >gi|259048108|ref|ZP_05738509.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] gi|259035169|gb|EEW36424.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens ATCC 49175] Length = 465 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 112/257 (43%), Gaps = 27/257 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 Y ++ +G ++ +N D AS++K+++ Y++ +K+ + T I IS A++ Sbjct: 50 YIAIEQTSGKILMQNNQDEVRGIASMSKMISQYLILESIKKGEITWETKIPISARANQLS 109 Query: 89 --YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 Y SN T+ + + SAN +AIAE + +E +++ M G Sbjct: 110 ANYNLSNVPLWPNEKYTIKELFDAISIYSANAATLAIAEYIGGSEANWIERMKAKLNEWG 169 Query: 147 LSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + +N G+ + + +AR +AI++ + DFP+ + I Sbjct: 170 IKDATIINVTGLPNKYGGSEKNPAFGDEDENSMSARSVAIIAKNLVNDFPEILKISSIPT 229 Query: 193 LEIKGK-----KYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K N N+ + L G G+KTG + + G +I +A + S+I V Sbjct: 230 QTFRPNGSGTTKMDNFNYLLPGLLFEYEGVTGLKTGTSESGGASITTTATRNGFSVIVVS 289 Query: 244 LGALDRNTRNKVSASLL 260 +G+ + R KV+ LL Sbjct: 290 MGSKEPLNRFKVTRHLL 306 >gi|325913382|ref|ZP_08175749.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII 60-B] gi|325477308|gb|EGC80453.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII 60-B] Length = 434 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 31/263 (11%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP 91 D +G ++ AS++KL+T Y+ +K K T + S+ A S+ P Sbjct: 78 DLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPE 137 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 SN + G T+ + +++SAN A+ +A ++ + KKFV M + +S Sbjct: 138 YSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQA 197 Query: 151 HFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-I 195 + G+ + +A DM IL + +FPQ + +I L+ + Sbjct: 198 QIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLETTRIAKLDFL 257 Query: 196 KGKK-YPNTNWAV--------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G+K + NW + DG+KTG T A+G + ++ ++ + ++ VI+GA Sbjct: 258 DGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGA 317 Query: 247 LDRNTRNK---VSASLLSMGFYN 266 N + V L FYN Sbjct: 318 RHLNGSDPARFVETKKLYAYFYN 340 >gi|182437561|ref|YP_001825280.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466077|dbj|BAG20597.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 311 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ TG + D + S TK+MTA VV S +K L + +T+ K S+Y Sbjct: 63 VMNDGTGKTLFTKSADTRRSTGSTTKIMTALVVLS---QKNVNLKSKVTVQKAYSDYIVK 119 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G T+ L L++ S D A A+A+ + K F+ MN T+ Sbjct: 120 KNASSARLIVGDKPTVGQLLYGLMLPSGCDAAYALADKFGSGKTRAARVKSFIGKMNATA 179 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------ 196 K+L L THF + G+ +Y+T RD+ ++ + + + + K + K Sbjct: 180 KSLKLKNTHFDSFDGIGGGNNYSTPRDLTKIASKAMKN-ATFRSIVKTKSTKQKVTTKSG 238 Query: 197 GKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G +Y NTN + ++ G G+KTG + + +V +A + +++I +L + R Sbjct: 239 GYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSSSEANRT 298 Query: 254 KVSASLLSMGF 264 + L+ GF Sbjct: 299 ADAKKLMDYGF 309 >gi|291459228|ref|ZP_06598618.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] gi|291418482|gb|EFE92201.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral taxon 078 str. F0262] Length = 334 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 6/122 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLL 111 AS+TK+MTA V +++ L T+++ + + S++ K G + +++ L + Sbjct: 109 ASITKVMTALVCLETVQD----LNQEFTVTQRSMIRDEGSSSALLKVGDRLRIEDLLYGM 164 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ S ND AVA+AE+ + + FV+ MN T+ LGL+ THF+N +G+ HYTTA D+ Sbjct: 165 LLPSGNDAAVAVAEASAGSVEAFVKKMNETALRLGLTGTHFVNPNGLPSDDHYTTAYDIY 224 Query: 172 IL 173 +L Sbjct: 225 LL 226 >gi|167756632|ref|ZP_02428759.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402] gi|167702807|gb|EDS17386.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402] Length = 342 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 24/223 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +++ + VI + D+ + AS++K+MT + ++ L T IT+ ++ Sbjct: 35 YIVMEASHQIVIEGSNQDYIQSVASISKIMTCIIAIENME-----LDTIITVDDTINKAW 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G ++L + L L+++S ND AV IA+++ K KFV MN+ +K L L +T Sbjct: 90 GSGVYIHIGDKISLRDLLYGLMLRSGNDAAVMIAKAVGKEIPKFVDMMNDKAKELQLHST 149 Query: 151 HFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------- 201 F N G+ + +G+ +T DMA L Y H I + K+Y Sbjct: 150 TFSNPTGLDEEDNGNQSTVYDMARLM--------AYCHQNPIFNEIVSTKEYKREDGNGT 201 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 N N + + G KTGFT + ++ A + D LI V Sbjct: 202 WHNKNKLLTNYEYCIGGKTGFTKKARRTLITMARKDDLDLIIV 244 >gi|167562012|ref|ZP_02354928.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis EO147] Length = 379 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A L+ P+ +S +Y Sbjct: 144 VVDERTGTVLIEKNANRVVPIASVTKLMTSMVAL----DARAPLSRPLRVSAQDRDYEKL 199 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 200 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRKARTLGMKHTH 259 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TA D++ L Sbjct: 260 FVNATGLSPR-NVSTAHDLSRL 280 >gi|28378040|ref|NP_784932.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum WCFS1] gi|28270874|emb|CAD63779.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum WCFS1] Length = 412 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 34/275 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ D ASL+KLMT Y+V ++ + T + I KN + S Sbjct: 44 VMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEHGQIKWTDAVPIRKNVRKMATS 103 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + T T+ +V S+N A+A+ E + + KF++ MN + L Sbjct: 104 ATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYVAGSNDKFIKLMNQQAAKWHLD 163 Query: 149 ATHFMNAHGV----------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 A+ F++A G+ Q + +AR + ++ + +P + + Sbjct: 164 AS-FISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVTTIAQHLIDAYPDVIQVANQRS 222 Query: 193 LEIKGKKYPNTNWAVGTFLGA---------DGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++I P + V GA DG+KTG+T +G +VA+ Q +IA Sbjct: 223 VKIHKYTVPTS---VEILKGAEYYDPRVPVDGLKTGYTNQAGACLVATYRQNGHRMIATT 279 Query: 244 L-GALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 L GA N + L + Y + K INY I Sbjct: 280 LGGAWQFTANNNLRLMLKTTEQYKQVVPKSINYQI 314 >gi|118386189|ref|XP_001026215.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89307982|gb|EAS05970.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 1085 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 56/244 (22%) Query: 54 ASLTKLMTAYVV------FSFLKEKKAMLTTP----ITISKNASEYPPSNSTFKKGSTMT 103 AS+TK+MT Y+V + F + + LT IT+SK AS+ +++ + G +T Sbjct: 598 ASITKIMTCYIVCDLLNKYDFKRNDEIKLTLKKDQIITVSKIASKMIGTSALLRHGDQLT 657 Query: 104 LDNALKLLIVKSANDIAVAIAESL-----------------------CKT---EKKFVQH 137 L + L L++ S ND A AI+E + C +K+F++ Sbjct: 658 LWDLLHGLMLPSGNDAAFAISEHVGSLIYESSPIFQQKKYQNPKLVSCNPKAGQKEFIKV 717 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQ--IKGLE 194 MN ++ L L T + N HG+ + + A D+ IL S +K YF+ +K +E Sbjct: 718 MNQYAQKLKLQKTFYQNPHGLTNSKNKSCADDICILISHAMKN------QYFREIVKTIE 771 Query: 195 I--------KGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 KG + + NTN + + G+KTG T A+G + + +++ + VI Sbjct: 772 YTAKISNSRKGSREQTWENTNKLLKSSCYCIGVKTGITPAAGACLSSCFSINNRNFVIVI 831 Query: 244 LGAL 247 L L Sbjct: 832 LNTL 835 >gi|260495307|ref|ZP_05815434.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33] gi|260197085|gb|EEW94605.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33] Length = 418 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISK +Y S K Sbjct: 173 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYGGSGIALKA 232 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN + LGL + + Sbjct: 233 GQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQNEIKYHTPA 292 Query: 157 GV-----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTNWA 206 G+ Q TAR + +++ + +Y Y +I G+ +I K N N Sbjct: 293 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKTTKIHNDKISIRNRNHL 348 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS +G +I V+LG TR+ + ++L++ Sbjct: 349 IGEN-GVYGIKTGFHKEAKYNIAVASKFEG-TDVIIVVLGGETYKTRDNLVRNILNI 403 >gi|312869422|ref|ZP_07729583.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris PB013-T2-3] gi|311095085|gb|EFQ53368.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris PB013-T2-3] Length = 407 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 31/244 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D +TG V+ E + AS++KL+T VV LK++ T + +S + AS+ Sbjct: 37 MIDASTGQVLYEQNANQKLPVASISKLLTVAVVHDELKQRIITANTRVNVSADVAAIASD 96 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G + T+ L +VKSA+ +A+AE+ ++F M+ +K +GL Sbjct: 97 PAYSAIGVQEGQSYTVRELLNAAMVKSADGATLALAEADGSNLEEFNLKMDQKAKEIGLK 156 Query: 149 ATHFMNAHGVV----------QHGHYT----TARDMAILSWRIKTDFPQYMH-------- 186 +N G+ Q+ + TA D+A+L+ + +P + Sbjct: 157 NYTIVNPVGLTNGDLKGLKLEQYANNAENAMTANDVALLARYLVQTYPDLLQVTAQKDAD 216 Query: 187 YFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 ++ K +K K P +AV + DG+KTG + A+G + V++ + +I V Sbjct: 217 FYIAKDKTVKADNLNKMLPGEQYAV-PGVKIDGLKTGTSAAAGPSFVSTGVYRGHRVITV 275 Query: 243 ILGA 246 +L A Sbjct: 276 VLHA 279 >gi|301299364|ref|ZP_07205646.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853035|gb|EFK80637.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 384 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 129/277 (46%), Gaps = 34/277 (12%) Query: 4 FLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LV++ +A++ S I + + + Y ++D TG V+ + + + ASLTK++T Sbjct: 10 ILVMLGIAIITGSGIMRGVKADKIDAKAAY-MIDAGTGQVLYQQNANSKYPIASLTKILT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + +K I ++K+ S+ + SN +G + T+ + ++ +++ SA+ Sbjct: 69 IAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSAD 128 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHG 162 A+A + + K F + M + G++ N G+ Q Sbjct: 129 GSTEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQEN 188 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKY--PNTNWAV-GTFLGA--- 213 ++ A+D+A++S + ++P+ + + K ++ K + Y N N+ + G++ Sbjct: 189 KFS-AKDIALISKYLVNNYPEVIDITKQKNVDFKISDDQTYNMENINYMLEGSYAAPKNG 247 Query: 214 --DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 DG+KTGFT +G+ V + Q +I VIL A D Sbjct: 248 TIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASD 284 >gi|325911591|ref|ZP_08173999.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII 143-D] gi|325476577|gb|EGC79735.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII 143-D] Length = 425 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKK-YPNTNWAV------ 207 + +A DM IL + +FPQ + +I L+ + G+K + NW + Sbjct: 208 NKNADAENELSASDMGILIKHLLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNETYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|167569264|ref|ZP_02362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis C6786] Length = 379 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A L+ P+ +S +Y Sbjct: 144 VVDERTGTVLIEKNANRVVPIASVTKLMTSMVAL----DTRAPLSRPLRVSAQDRDYEKL 199 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 200 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRKARTLGMKHTH 259 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TA D++ L Sbjct: 260 FVNATGLSPR-NVSTAHDLSRL 280 >gi|312872197|ref|ZP_07732270.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2062A-h1] gi|311092281|gb|EFQ50652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2062A-h1] Length = 425 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAIKAGKISWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKK-YPNTNWAV------ 207 + +A DM IL + +FPQ + +I L+ + G+K + NW + Sbjct: 208 TKNADAENELSASDMGILIKHLLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|237743211|ref|ZP_04573692.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1] gi|229433507|gb|EEO43719.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1] Length = 389 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISK +Y S K Sbjct: 144 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYGGSGIALKA 203 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN + LGL + + Sbjct: 204 GQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQNEIKYHTPA 263 Query: 157 GVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTNWA 206 G+ Q TAR + +++ + +Y Y +I G+ +I K N N Sbjct: 264 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKTTKIHNDKISIRNRNHL 319 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS +G +I V+LG TR+ + ++L++ Sbjct: 320 IGEN-GVYGIKTGFHKEAKYNIAVASKFEG-TDVIIVVLGGETYKTRDNLVRNILNI 374 >gi|313124231|ref|YP_004034490.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280794|gb|ADQ61513.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 428 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 34/251 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PIT----ISKNA 86 +D ++G ++ P AS+TKL+T Y+ +K+ K T+ P IS+N Sbjct: 52 VDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKISQN- 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 +EY SN T+ + +++SAN A+ +A+++ + FV+ M + G Sbjct: 111 TEY--SNVPLTSSHAYTIKELYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSWG 168 Query: 147 LSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 + NA G+ + +A DMAI+ ++ DFP+ + I Sbjct: 169 IKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSITS 228 Query: 193 LEIKG----KKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N NW + L DG+KTG T +G + + +I V Sbjct: 229 ATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIITV 288 Query: 243 ILGALDRNTRN 253 +LGA N+++ Sbjct: 289 VLGAKHANSQD 299 >gi|227509182|ref|ZP_03939231.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227525051|ref|ZP_03955100.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC 8290] gi|227087763|gb|EEI23075.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC 8290] gi|227191328|gb|EEI71395.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 408 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 31/241 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD NT V+ + P AS++KLMT Y+V + T+ + S + + Sbjct: 147 LDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNAGLKKLGKD 206 Query: 94 STFK-----KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-----KKFVQHMNNTSK 143 STF K S D L LI +S+N+ A+A+ + + KKF+ MN +K Sbjct: 207 STFGGFKFTKNSYTVRDLYLAALI-ESSNNAAIALGQWVAGGSTPTYNKKFISMMNAQAK 265 Query: 144 NLGLSATHFMNAHGVVQ-------------HGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + LS T F++A G+ Q + + +A D+A ++ + TD+ + I Sbjct: 266 SWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYNDVLKDASI 325 Query: 191 KGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVI 243 + + G+K N N + L DG+KTG+T +G+ V + + G +I V+ Sbjct: 326 GSMSLDGQKLYNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDRIITVV 385 Query: 244 L 244 L Sbjct: 386 L 386 >gi|29839835|ref|NP_828941.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC] gi|29834182|gb|AAP04819.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC] Length = 433 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 27/240 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS--------FLKEKKAMLTTPITISK 84 ++ + TG V+ D PAS+TK+ TA + F+ K+ + + +K Sbjct: 38 VIQSETGKVLYAKDIDKRIYPASMTKIATALFILRKHPDLLNRFITVKQDAIASITPQAK 97 Query: 85 NASEY-PPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFV 135 S Y P + G T+ L N ++ L++ SAND A +A + + +F+ Sbjct: 98 KQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANTLAMACSGSVSEFM 157 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-AILSWRIKTD-FPQYMHY--FQIK 191 + +N+ K +G + THF N HG+ HYTTARD+ +I+ +K F Q + +++ Sbjct: 158 KQLNSFLKEIGCADTHFNNPHGLHHPNHYTTARDLTSIMREGLKEPLFRQVIRTTNYKMA 217 Query: 192 GLEIKGKKYPN-TNWAV--GT---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + ++ N TN + G+ + A G KTG T +G N+V +A + +S+I + G Sbjct: 218 ATNLSQERVLNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAAG 277 >gi|16077078|ref|NP_387891.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221307819|ref|ZP_03589666.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. 168] gi|221312141|ref|ZP_03593946.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317074|ref|ZP_03598368.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. JH642] gi|221321337|ref|ZP_03602631.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. SMY] gi|585034|sp|P08750|DACA_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=CPase; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|467400|dbj|BAA05246.1| D-alanine carboxypeptidase (PBP-5) [Bacillus subtilis] gi|2632277|emb|CAB11786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. 168] Length = 443 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 29/243 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ + + K T E Sbjct: 45 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQD 104 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+ Sbjct: 105 NSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLT 164 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ HGH +A+DMA+L+ + TD+P+ + I + Sbjct: 165 DYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTK 224 Query: 195 IKGK-----KYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + PN N+ + + DG+KTG T ++G +A + +I V+ Sbjct: 225 FREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVV 284 Query: 244 LGA 246 L A Sbjct: 285 LNA 287 >gi|262376983|ref|ZP_06070209.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145] gi|262308021|gb|EEY89158.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145] Length = 353 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 24/242 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + + AS+TKLMTA V+ + + ++ IT+ + + S Sbjct: 114 VMDAQTGEVLFSKNTNTAYPIASITKLMTAVVI----SDARLNMSEKITLQQADFSCSGC 169 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G +M AL ++KS N A A+A + F+ MN +K LG+++ Sbjct: 170 KSSSSTLRAGDSMNRAEALLFALMKSENPAAAALARTYPGGRSAFIAKMNAKAKELGMNS 229 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDF---PQYMHYFQIKGLEIKGKK-- 199 T FM + G + G+ +ARD+ IL + + F P Y + L+ Sbjct: 230 TRFMESTG-LHPGNMASARDLGILVNTASQYGLIRQFSTTPSYDFNLGYRVLKSNNTNAL 288 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N W + KTGF +G +V ++ + V+LGA R + L Sbjct: 289 VRNGGWNINI------SKTGFINEAGRCVVMHTTLNNRPVAVVLLGANSSQARTNDATRL 342 Query: 260 LS 261 +S Sbjct: 343 MS 344 >gi|116334615|ref|YP_796142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] gi|116099962|gb|ABJ65111.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] Length = 439 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 122/293 (41%), Gaps = 43/293 (14%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSI------AETN------KLPYYTLLDTNTGHVIAENY 46 ++Q +V + AM +++ F L A TN + +D TG ++ + Sbjct: 4 LKQLMVGLVTAMTLITGGFSTLGTTVTAHAASTNSTTVNLQAKAGIAVDAKTGQILYDKN 63 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTM 102 D AS+TKL++ Y+V + + K IT++K ++ SN + G + Sbjct: 64 SDQSLPVASMTKLLSVYLVLDAIHDGKLKWDQKITVNKATAKVAQNTNLSNVPLRAGHSY 123 Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--Q 160 T+ + + ++ SAN A+ ++ + FV M +K LG++ NA G+ Q Sbjct: 124 TVKSLYQASLIYSANGAIEALGTAVAGSPHAFVTKMRAEAKTLGMTNAKIYNACGLTNKQ 183 Query: 161 HGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNT 203 G +A D A L+ + +P+ + IK + + K N Sbjct: 184 VGKLGYSNVKGSTENEWSAADQAKLAVALVNKYPEVLKTTSIKKMWFEKGTSDATKMENW 243 Query: 204 NWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 NW + L DG+KTG + A+G N +A +I V+L A ++ Sbjct: 244 NWMLKGLSASYSKLHVDGLKTGTSDAAGANFTGTANNNGNRIITVVLHAAHKS 296 >gi|90962503|ref|YP_536419.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius UCC118] gi|90821697|gb|ABE00336.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus salivarius UCC118] Length = 384 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 130/281 (46%), Gaps = 34/281 (12%) Query: 4 FLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LV++ +A++ S I + + + Y ++D TG V+ + + + ASLTK++T Sbjct: 10 ILVMLGIAIITGSGIIRGVEADKIDAKAAY-MIDAGTGQVLYQQNANSKYPIASLTKILT 68 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + +K I ++K+ S+ + SN +G + T+ + ++ +++ SA+ Sbjct: 69 LAVIMKDIHNQKLSWNQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSAD 128 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------------VQHG 162 A+A + + F + M + G++ N G+ Q Sbjct: 129 GSTEALALVDAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQEN 188 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKY--PNTNWAV-GTFLGA--- 213 ++ A+D+A++S + ++P+ + + K ++ K + Y N N+ + G++ Sbjct: 189 KFS-AKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNG 247 Query: 214 --DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 DG+KTGFT +G+ V + Q +I VIL A D N + Sbjct: 248 TIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQ 288 >gi|325689091|gb|EGD31099.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK115] Length = 422 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ SAN +A+AE + +E+ FVQ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSANSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + YT +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETDYTASASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSEKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|167837175|ref|ZP_02464058.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis MSMB43] Length = 362 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 135 ASITKLMTAMVVL----DSKAPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 190 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG+S THF N+ G+ + ++ARD+ Sbjct: 191 MASENRAAAALSRYYTGGRPAFIAAMNAKAKSLGMSDTHFENSTGLSSQ-NVSSARDLVK 249 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 250 M-VNAAYQYPLIRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGL------QKTGFI 302 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 303 NEAGECLVMQTTIHSRPIVMVLLDSFGKYSR 333 >gi|146182375|ref|XP_001024481.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|146143834|gb|EAS04236.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 583 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 38/230 (16%) Query: 54 ASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTK+MT Y+V ++++ + T +S +A+ P + + +G +++ + L ++ Sbjct: 323 ASLTKMMTCYIVVHYIRKLNLIPEKTYFKVSAHAANQPGTTAGLTEGDVVSIMDLLYGMM 382 Query: 113 VKSANDIAVAIAESL-----------------CKTEKK---------FVQHMNNTSKNLG 146 + S ND A +AE+ +T KK F++ MN+ ++ L Sbjct: 383 LPSGNDAAFVLAENFGVYLYMQTDKFKEKYGNAQTNKKLKVKNPITYFIKEMNDFAEKLN 442 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWR------IKTDFPQYMHYFQIKGLEIKGKKY 200 + T+F N HG++ + +T+ D+ +LS+ IK Q + I ++ K Sbjct: 443 MQDTYFTNPHGLMHKKNKSTSYDVGLLSYYLIHDPLIKQIMAQQTYNANIMTETLQLKNP 502 Query: 201 P----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 P NTN + G G+KTG T ++G + + + +LI ++LGA Sbjct: 503 PTIWKNTNKMLKK-TGFLGLKTGITPSAGPCLASWYNHENINLIIILLGA 551 >gi|257092407|ref|YP_003166048.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044931|gb|ACV34119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 417 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MTA VV + + L PITIS + +Y S S + GS + + AL L + Sbjct: 195 ASITKVMTAMVVL----DSQPNLQAPITISDDDVDYLRGSRSRLQVGSVIPRETALLLAL 250 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ FV MN + +LG++ +HF + G+ + + +TA D+A Sbjct: 251 MSSENRAANALGRHYPGGLTAFVAAMNRKAASLGMTRSHFEDPTGLNSN-NVSTAHDLAR 309 Query: 173 LSWRIKTDFPQYMHYFQIKG--LEIKGKK--YPNTNWAVGTFLGADGM-KTGFTCASGFN 227 + +P + G EI G++ + NTN V + G+ KTG+ +G Sbjct: 310 MVA-AAHRYPLIREFSTTSGARAEINGRELGFHNTNQLVSSPTWEIGLSKTGYIQEAGKC 368 Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252 +V A D+ ++ V+L + + TR Sbjct: 369 LVMQARVADKPVVIVLLDSAGKQTR 393 >gi|256027623|ref|ZP_05441457.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11] gi|289765581|ref|ZP_06524959.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11] gi|289717136|gb|EFD81148.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11] Length = 407 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISK +Y S K Sbjct: 162 GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYGGSGIALKA 221 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL-SATHFMNAH 156 G L++ +K V SAN+ AIAE + FV MN + LGL + + Sbjct: 222 GQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQNEIKYHTPA 281 Query: 157 GVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP--NTNWA 206 G+ Q TAR + +++ + +Y Y +I G+ +I K N N Sbjct: 282 GLPTRVTKQPMDEGTARGI----YKLSIEALKYKKYIEIAGIKTTKIHNDKISIRNRNHL 337 Query: 207 VGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +G G G+KTGF + +NI VAS +G +I V+LG TR+ + ++L++ Sbjct: 338 IGEN-GVYGIKTGFHKEAKYNIAVASKFEG-TDVIIVVLGGETYKTRDNLVRNILNI 392 >gi|227486995|ref|ZP_03917311.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glucuronolyticum ATCC 51867] gi|227093069|gb|EEI28381.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glucuronolyticum ATCC 51867] Length = 402 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 33/246 (13%) Query: 20 LSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 +S+ E LP + + D +TG + A P + PAS+ K++ A V L Sbjct: 83 VSVPEGFSLPDGLLAHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAIDRLS--- 139 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 LT + ++ +S+ S++ G T+D+ L L++ S ND A AIA+ L +++ Sbjct: 140 --LTDSMEVTAESSDQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQ-LLGGDEE 196 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------D 180 ++ +N + +LG + T + G+ G T+A DMA+ +W T D Sbjct: 197 ALRMVNARALDLGSTDTRVASYSGLDSAGMQTSAYDMALFFTDAWSKPTFREILGTEKYD 256 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP + + G + N N + A G KTGFT + V + L Sbjct: 257 FPGFK--------DNPGFEMWNDNRMLFVNENALGGKTGFTDDARHTYVGAMNHKGHRLA 308 Query: 241 AVILGA 246 AVIL A Sbjct: 309 AVILDA 314 >gi|325697563|gb|EGD39449.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK160] Length = 409 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 60/296 (20%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ ++ T + IS Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIERGDLTADTYVDISDYAYNLTADP 80 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P +K + + + ++ SAN +A+AE + +E+ FVQ M K Sbjct: 81 NISNIPLEAKRYK------VKDLIAASLMSSANSATIALAEKVGGSEENFVQMMKAKLKE 134 Query: 145 LGLSATHFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTD 180 G+ +N+ G+ + YT +A D+A++S + D Sbjct: 135 WGIKDATIVNSTGLNTLLLEYASEETDYTASASTAKKSKDTENKFSAYDLAVISRHLIMD 194 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 195 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGISEKGGSSFVATTTENG 254 Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +I V+L D R +ASL+ NY+ ++F Q + E Sbjct: 255 IRMITVVLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 297 >gi|262067346|ref|ZP_06026958.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium periodonticum ATCC 33693] gi|291378909|gb|EFE86427.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium periodonticum ATCC 33693] Length = 424 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+ G+VI PD + AS+TK+M+ V F + L + ISK +Y Sbjct: 172 VLIGDLNGNVIFSKNPDTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKYGG 231 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL--S 148 S K+G L++ +K V SAN+ A+AE + + FV MN K LGL Sbjct: 232 SGIPLKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNRKLKQLGLQND 291 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 ++ A ++ +++ + +Y Y +I G IK K N ++ Sbjct: 292 IKYYTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYHKYIEIAG--IKNTKIHNDKISIR 349 Query: 209 T---FLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 +G D G+KTGF + +NI + LI V++G TR+ + ++++ Sbjct: 350 NRNHLIGEDGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTIIA 408 >gi|167580237|ref|ZP_02373111.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis TXDOH] Length = 355 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 120 VVDERTGTVLIERNANRVVPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 175 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS + + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 176 TGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKHTH 235 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 236 FVNATGLSPR-NVSTARDLSRL 256 >gi|125718743|ref|YP_001035876.1| penicillin-binding protein 3 [Streptococcus sanguinis SK36] gi|125498660|gb|ABN45326.1| Penicillin-binding protein 3, putative [Streptococcus sanguinis SK36] Length = 419 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 45/287 (15%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTANP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYT-------------TARDMAILSWRIKTDFPQYMHYFQ 189 +N+ G+ + YT +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETDYTSTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITS 213 Query: 190 IKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 +I G N N+ + F G DG+K G + G + VA+ + +I V+L Sbjct: 214 KSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLD 273 Query: 246 AL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 D R +ASL+ NY+ ++F Q + E Sbjct: 274 VEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 307 >gi|332974550|gb|EGK11470.1| D-alanyl-D-alanine endopeptidase PbpG [Kingella kingae ATCC 23330] Length = 313 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 25/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 +++ NTG + + D+ + AS++KLM A VV + + + ITI++ Sbjct: 77 IMNANTGQIFYQKNMDNVRSIASISKLMAAMVVL----DARLDMNQRITITEAEIDRLKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FVQ MN +++LG+ + Sbjct: 133 TGSRLSIGTTLTRGQMLHLGLMSSENRAIHALGRTYPGGMSAFVQAMNAKARSLGMMNSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNT--- 203 F G+ + +TAR+++++ R + +PQ + E K ++Y N+ Sbjct: 193 FYEPTGLDPR-NVSTARELSMM-VRAASQYPQIRQLSTAQSGEAYTSTGKFEQYKNSNIF 250 Query: 204 ----NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NW + KTG+ +G ++V G + +I V+LG+ TR + +L Sbjct: 251 VREGNWNITV------QKTGYIREAGRSMVMQTQMGREPVIIVVLGSQTTTTRANDARAL 304 Query: 260 LSM 262 SM Sbjct: 305 SSM 307 >gi|291482380|dbj|BAI83455.1| penicillin-binding protein 5 [Bacillus subtilis subsp. natto BEST195] Length = 443 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 29/241 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ ++G ++ D AS+TK+MT Y++ + + K T E Sbjct: 45 MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQD 104 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 NS +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+ Sbjct: 105 NSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLT 164 Query: 149 ATHFMNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 F+NA G+ HGH +A+DMAIL+ + TD+P+ + I + Sbjct: 165 DYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTK 224 Query: 195 IKGK-----KYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + PN N+ + + DG+KTG T ++G +A + +I V+ Sbjct: 225 FREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVV 284 Query: 244 L 244 L Sbjct: 285 L 285 >gi|326316983|ref|YP_004234655.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373819|gb|ADX46088.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 371 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT ++ E K + PITI+++ + Sbjct: 117 VIDQDTQEVLLSKN-DHAVLPIASLTKLMTGLLI----SEAKLPMDEPITITQDDVDTEK 171 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+S G+T+T L L ++ S N A A+ + + FV MN ++ +G++ T Sbjct: 172 FSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVARMNAKARLIGMTET 231 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 ++ G+ H + ++ARD+A L +D P G E+ G++ + NTN Sbjct: 232 RYVEPTGLSSH-NQSSARDLATLVNVAHSD-PLLRELTTSPGYEVAVGRRTLHFNNTNRL 289 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + +R Sbjct: 290 VKNPAWDIGL------QKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFSR 336 >gi|262370174|ref|ZP_06063501.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046] gi|262315213|gb|EEY96253.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046] Length = 351 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 24/227 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D NTG V+ + AS+TKLMTA V+ + + ++ IT+ + + S Sbjct: 112 VMDGNTGEVLYSKNSNTALPIASITKLMTAVVI----SDARLNMSENITLQQADFSCSGC 167 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+S+ + G +M AL ++KS N A A+A + FV MN +K+LG+++ Sbjct: 168 KSSSSSLRAGDSMNRAEALLFALMKSENPAASALARTYPGGRSAFVSAMNAKAKSLGMNS 227 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHY-FQIKGLEIKGKK---- 199 TH+M + G + G+ +ARD+ IL + + F Y F + +K Sbjct: 228 THYMESTG-LHPGNIASARDLGILVNAASQYGLIRQFSTTASYDFNLGYRVLKSNNTNAL 286 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N W + KTGF +G +V ++ + V+LGA Sbjct: 287 VRNGGWNINI------SKTGFINEAGRCVVMHTTLNNRPAVVVLLGA 327 >gi|302535014|ref|ZP_07287356.1| predicted protein [Streptomyces sp. C] gi|302443909|gb|EFL15725.1| predicted protein [Streptomyces sp. C] Length = 879 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 16/205 (7%) Query: 54 ASLTKLMTAYVVF---SFLK-EKKAML----TTPITISKNASEYPPSNSTFKKGSTMTLD 105 AS+TK MTAY++ F K EK AM+ T K+ S+ + +T K+G ++ Sbjct: 568 ASVTKSMTAYIIMRDHPFKKGEKGAMIDVDKTAETEGQKDKSDNESTLNTVKEGEKISEY 627 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 +A+ L++ SAN+IA +A +++ FV+ MN+T+K LG++ T + + G+ + Sbjct: 628 DAIAALMIPSANNIARLLARWDSGSQEAFVKKMNDTAKELGMTNTTYTDPSGL-DATTVS 686 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 TA D L +I + P + ++ + GK + N N V F + G+KTG T + Sbjct: 687 TAEDQVKLGLKI-VEIPALVDITRMPAWTDQTGKVWQNWNRLV-PFNDSLGIKTGTTTKA 744 Query: 225 GFNIVASAIQ--GD--QSLIAVILG 245 G N++ +A + GD Q L+ +LG Sbjct: 745 GGNLLFAAQKKVGDTNQLLVGAVLG 769 >gi|317508309|ref|ZP_07965989.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316253484|gb|EFV12874.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length = 297 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 16/223 (7%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + + D +TG V+A P ++PAS K + A VV S L + ++++NA + Sbjct: 53 PAWLVADLDTGEVLAARNPHSHYHPASTIKTLLAIVVLSELDVGQ-------SLTENADD 105 Query: 89 YPPSNST----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + + G T T+ L+ L++ S+N A +A +L V MN + Sbjct: 106 EAADRESIVRFIRPGETHTVRELLEALLMISSNGAANTLARALGGVGPA-VAKMNAEAAR 164 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYP 201 LG + T G+ G ++ D+A+ +R P + + + + G + Sbjct: 165 LGANDTRAATPSGLEAPGVSSSPHDLALF-FRAALRNPTFAEIVRQERATVSGSPAIQLV 223 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + +G++ G G KTGFT + +N V +A + + L+ ++ Sbjct: 224 NRDPLLGSYPGMLGGKTGFTDEAQYNFVGAAARHGRRLVVAVM 266 >gi|315653180|ref|ZP_07906105.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC 55195] gi|315489545|gb|EFU79182.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC 55195] Length = 429 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 31/265 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 + D +G ++ AS++KL+T Y+ + K T + S+ A S+ Sbjct: 71 IYDLKSGQIMYAKNIKQKLPVASMSKLLTVYLTLKAINAGKISWQTKVMPSREAIAVSKN 130 Query: 90 PP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P SN + G T+ + +++SAN A+ +A ++ + KKFV M + +S Sbjct: 131 PEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHIS 190 Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + G+ + +A DM IL + +FPQ + +I L+ Sbjct: 191 QAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLD 250 Query: 195 -IKGKK-YPNTNWAV--------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G+K + NW + DG+KTG T A+G + ++ ++ + +I VI+ Sbjct: 251 FLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIITVII 310 Query: 245 GALDRNTRNK---VSASLLSMGFYN 266 GA N + V L FYN Sbjct: 311 GARHLNGSDPARFVETKKLYAYFYN 335 >gi|328883123|emb|CCA56362.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC 10712] Length = 781 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 11/204 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109 AS+TK MTAYV+ K I I + A++ S + +KG T T L+ Sbjct: 457 ASVTKTMTAYVILRDHPLKGKQQGPEIEIDQKAADQGKAEHESTAAVQKGQTYTEKELLE 516 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ SAN++A +A +E FV+ MN +K LG++ + + + G++ T Sbjct: 517 LLMIPSANNVARLLARWDAGSEAAFVEKMNAAAKQLGMTQSTYTDPSGLLDSTMSTPQDQ 576 Query: 170 MAILSWRIKTD-FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + + ++ D F + ++ + I G+ N N + G G+KTG + +G N+ Sbjct: 577 LKLAKAVMQYDVFREIVNMPNVTVDGIPGRIENNNNILLKP--GVSGIKTGSSTPAGGNL 634 Query: 229 VASA---IQG-DQSLIAVILGALD 248 + +A + G ++ ++ +++GA D Sbjct: 635 LWAANTVVDGQNRRILGIVMGAKD 658 >gi|297201047|ref|ZP_06918444.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] gi|197712169|gb|EDY56203.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] Length = 277 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 22/245 (8%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + D + S TK+MTA VV L + L +TI K S+Y +N+ + Sbjct: 33 GKTLYTKAADTKRSTGSTTKIMTAKVV---LAQSNLNLDKKVTIQKAYSDYIVANNASQA 89 Query: 99 ----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTSKNLGLS 148 G +T+ L L++ S D A A+A++ K F+ MN + +LGL Sbjct: 90 HLIVGDKVTVRQLLYGLMLPSGCDAAYALADTYGTGSTRAARVKSFISKMNQAATSLGLR 149 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIK-GLEIKGKK 199 THF + G+ +Y+T RD+ ++ +R +Y K G Sbjct: 150 NTHFDSFDGIGNGNNYSTPRDLTKIASSAMKNATFRTVVKTKKYTAKTITKTGSTRTMAP 209 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + NTN + ++ G G+KTG + + +V +A + +++I +L + R + L Sbjct: 210 WTNTNGLLSSYSGTIGVKTGSGPEAKYCLVVAATRNGKTVIGTVLASTSITQREADAKKL 269 Query: 260 LSMGF 264 L+ GF Sbjct: 270 LNYGF 274 >gi|242372443|ref|ZP_04818017.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis M23864:W1] gi|242349865|gb|EES41466.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis M23864:W1] Length = 393 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 31/267 (11%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L T G ++ + + +PASLTK+MT Y+ +K K + + I+ ++ Sbjct: 48 PQSLTLSTEQGQILYSYHENKKVDPASLTKMMTMYLTLDAVKSGKLHMNDKVKITNQQAQ 107 Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S+ K G T+ L + S+N A+ + E + K+ F MN +K Sbjct: 108 LSRKSNLSSVPLKAGQIYTVKEILSQTALASSNAAALILGEKVSKSTSTFTDQMNQQAKQ 167 Query: 145 LGLSATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQI 190 ++ TH+ + G H +T++DM I+ + + + P+ + + Sbjct: 168 FHMNHTHYTSPTGADTHLLGPSAPEKYKNQGKTQSTSKDMNIMMYEMLKNHPEILKITKK 227 Query: 191 KGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-- 244 KG+ + +TN ++ + G DG+KTG T SG+++ + Q L IL Sbjct: 228 TSETQKGQTFKSTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHRLRLNETILDV 286 Query: 245 ----GALDRNTRNKVSASLLSMGFYNK 267 + TRN+++ + M +Y K Sbjct: 287 SPYPSETAKLTRNEIANDM--MKYYRK 311 >gi|291522282|emb|CBK80575.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7] Length = 383 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 14/223 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++G ++ + AS TK+MT V + + ++ S AS P Sbjct: 41 LMDADSGRILYGKNETMAFPMASTTKIMTLIVALEHNEPDQIVMA-----SAGASAMPEV 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +G +++ ++++S ND A+ IAE + + F + MN + +LG + T+F Sbjct: 96 RLGVHEGERYRMEDLYYAMMLESFNDAAMMIAEGTVGSVENFAELMNEKAISLGCTQTYF 155 Query: 153 MNAHGV---VQHG-HYTTARDMA-ILSWRIKT-DF---PQYMHYFQIKGLEIKGKKYPNT 203 + +G+ + G H +TA DMA I+ + I DF Q Y + + N Sbjct: 156 ITPNGLDAADEKGVHSSTAEDMAKIMRYAIDNEDFLKITQTADYSFTDCDRKRSFEVHNK 215 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N + G KTG+T +G+ V + + D++ IA +LG+ Sbjct: 216 NVLLTMMDGVLSGKTGYTADAGYCYVCAVKKDDRTFIAALLGS 258 >gi|78044170|ref|YP_359992.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77996285|gb|ABB15184.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 325 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 12/225 (5%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 YY + T T +I D P PAS TK+ TA + P + ++ Sbjct: 28 YYFFIPT-TNQIIEAKNQDFPLPPASTTKIATALTALDLYPRNFTLTVKPEAVRVTGTKI 86 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 K + + + + L+++S ND A A+A + K + F+ +N K +GL++ Sbjct: 87 -----YLKPNEKIAVIDLVYGLMLESGNDAANALAWVVGK--ENFMLILNYYLKQMGLTS 139 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQYMHYFQIKGLE-IKGKKYPNTNWA 206 F N G+ GH +A+D+ +L++ +K +F Q + K + + NTN Sbjct: 140 VSFKNPSGLSAPGHKISAKDLCVLTFYALLKDEFADICKTKQYEAQSGFKPRVFHNTNRL 199 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + G+KTG T +G +V A +G+ LI +L DR T Sbjct: 200 LAVDSRVIGVKTGTTNEAGKCLVG-AWRGNSFLIGTVLNCPDRFT 243 >gi|160900293|ref|YP_001565875.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia acidovorans SPH-1] gi|160365877|gb|ABX37490.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia acidovorans SPH-1] Length = 365 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +LD +T H + + DH P ASLTKLMT ++ + + ITI+++ + Sbjct: 118 VLDQDT-HEVLLSKNDHAVLPIASLTKLMTGLLI----SQAHLPMDEAITITQDDVDTEK 172 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+S G+T+T L L ++ S N A A+ + FVQ MN ++ LG++ T Sbjct: 173 GSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLDAFVQQMNAKARLLGMTDT 232 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 ++ G+ + ++ARD+A+L +D P Y G E+ G++ Y NTN Sbjct: 233 RYVEPTGLSSR-NQSSARDLAVLVNVAHSD-PLVREYTTSPGYEVAVGRRTLQYNNTNRL 290 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + +I V L + + +R Sbjct: 291 VMSPTWDIGL------QKTGYISEAGRCLVMQAQVAGRKIIMVFLDSAGKFSR 337 >gi|229824756|ref|ZP_04450825.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC 49176] gi|229791085|gb|EEP27199.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC 49176] Length = 329 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PASLTK+MTAYVVF+ KEK T I S SE G +T+ L Sbjct: 99 PASLTKMMTAYVVFA--KEKNLDRTVKIDGESIKISEPLAKKIRLMDGDEVTIRQLLNAA 156 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V SAND A A+A ++ +E+KF MN +K +G + + F+N+ G+ HY+T D+ Sbjct: 157 LVTSANDAAKALAVAVAGSEEKFAALMNEEAKKIGATHSRFVNSTGLHDTAHYSTLYDLY 216 Query: 172 IL 173 ++ Sbjct: 217 LI 218 >gi|324996133|gb|EGC28044.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK678] Length = 422 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 31/242 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G++ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGITDA 153 Query: 151 HFMNAHGV--------VQHGHYTT----------------ARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+T A D+A++S + DFPQ Sbjct: 154 TVVNSTGLNTLLLEYATEETEYSTSASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 IL 244 +L Sbjct: 274 VL 275 >gi|254298329|ref|ZP_04965781.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] gi|157808378|gb|EDO85548.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] Length = 454 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 219 VVDERTGTVLIERNANRVMPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 274 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ H Sbjct: 275 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRMH 334 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 335 FVNATGLSPR-NVSTARDLSRL 355 >gi|326778695|ref|ZP_08237960.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces cf. griseus XylebKG-1] gi|326659028|gb|EGE43874.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces cf. griseus XylebKG-1] Length = 890 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 25/193 (12%) Query: 54 ASLTKLMTAYVVFS--FLKEKKAMLTTPITISKNA---SEYP-PSNSTFKKGSTMTLDNA 107 AS+ K+MTA+V+ LK + T IT+ + A S+ P S + KG +T Sbjct: 565 ASVAKVMTAHVILQEHPLKGDEEGET--ITVDQKAEDESQRPDESTAPLTKGQKLTQRQM 622 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+LL++ S N+ A +A +E F+ MN+ +K+LG++ + + + G ++ +TA Sbjct: 623 LQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSG-LEKTTVSTA 681 Query: 168 RDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 D L+ +R D P+ +IKG I GK Y N N + G G+KTG Sbjct: 682 TDQLKLAQAVMRNEVFRKIVDMPE----VEIKG--IDGKIYNNNNLLL--QPGVSGIKTG 733 Query: 220 FTCASGFNIVASA 232 + +G N++ SA Sbjct: 734 SSTPAGGNLLWSA 746 >gi|194467285|ref|ZP_03073272.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri 100-23] gi|194454321|gb|EDX43218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri 100-23] Length = 403 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 31/256 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + D +TG +I + D AS+TKL+T V+ +++K+ T + I+ +++ Sbjct: 35 MADASTGQIIYKRNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAAISND 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ K G + ++ + +VKSA+ VA+A + +F M +K +G++ Sbjct: 95 AAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKIGMT 154 Query: 149 ATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHY------- 187 T+ +N+ G+ + +ARD+AILS +P+ + Sbjct: 155 KTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVKHYPELLQITAQKEVK 214 Query: 188 FQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 FQI ++K +K P + V + DG+KTG + ++G ++ +I V Sbjct: 215 FQIAKDQVKTEKNLNKMLPGEQYVV-KGVTIDGLKTGTSDSAGACFASTGKYQGHRIITV 273 Query: 243 ILGALDRNTRNKVSAS 258 IL + N N+ A+ Sbjct: 274 ILHSKGSNKDNRFKAT 289 >gi|50083539|ref|YP_045049.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. ADP1] gi|49529515|emb|CAG67227.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. ADP1] Length = 352 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 22/240 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + ASLTKLMTA V + + ++ IT+ + + Sbjct: 113 VMDAQTGEVLYSKNTNTSMPIASLTKLMTAVVT----SDARLDMSEEITLEQIDFAGAGG 168 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG+++ Sbjct: 169 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARQLGMTS 228 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPN 202 TH++ + G+ H + ++ARD+ IL + QY Q L + K N Sbjct: 229 THYVESSGLDPH-NVSSARDLGIL----VSAASQYGLIRQFSTTPSYDFNLGYRVLKSNN 283 Query: 203 TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN V G + + KTG+ +G +V + + V+LGA RN + +LL Sbjct: 284 TNALVRNGGW-NINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASSTQARNNDATNLL 342 >gi|317471249|ref|ZP_07930614.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|316901296|gb|EFV23245.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 198 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 13/181 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASL 56 M++ +I L F ++ + L Y L+D +G V+ + AS Sbjct: 1 MKKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++T + K L T+SKNA+ P + + G + + L L+++S Sbjct: 61 TKILTCLYII-----KHCNLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESY 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAI 172 ND AV +AE + + F + +N +++ G +THF+ +G+ + H TTA D+A+ Sbjct: 116 NDCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLAL 175 Query: 173 L 173 + Sbjct: 176 I 176 >gi|237738804|ref|ZP_04569285.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31] gi|229423907|gb|EEO38954.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31] Length = 419 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+MT V F + L + ISK +Y S K+ Sbjct: 174 GNVIFSKNADTMYPLASVTKVMTLLVTFDEINAGNISLNDSVRISKTPLKYGGSGIALKE 233 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL---------S 148 G L++ +K V SAN+ AIAE + + FV MN K LGL + Sbjct: 234 GQIFVLEDLIKASAVYSANNATYAIAEYVGEGSVFNFVAKMNKKLKQLGLQNDIKYHTPA 293 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 N + G T R + +++ + +Y Y +I G IK K N ++ Sbjct: 294 GLPTRNTKMPMDEG---TPRGI----YKLSIEALKYHKYIEIAG--IKNTKIYNGKISIR 344 Query: 209 T---FLGAD---GMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 +G D G+KTGF + +NI VA +G LI V++G TR+ + ++++ Sbjct: 345 NRNHLIGEDGVYGIKTGFHKEAKYNITVAVKFEG-IDLIIVVMGGETYKTRDDLVRTIIA 403 >gi|282863879|ref|ZP_06272937.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] gi|282561580|gb|EFB67124.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] Length = 321 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 21/227 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ T + D S TK+MTA VV L +K L + +TI K S+Y Sbjct: 73 VMNNGTAKALYSKAADTRRPTGSTTKIMTAKVV---LAQKNLNLDSKVTIQKAYSDYIVS 129 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN ++ Sbjct: 130 KNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNASA 189 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLE 194 K+LGL THF + G+ +Y+T RD+ L+ +R K Sbjct: 190 KSLGLKNTHFDSFDGIGSGSNYSTPRDLTKLASNAMKNSTFRTVVKTKSTKQKVTTKSGG 249 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + + NTN +G + GA G+KTG + + +V +A + +++I Sbjct: 250 YRYMAWDNTNPLLGGYSGAIGVKTGSGPTAKYCLVFAATRNGKTVIG 296 >gi|332359192|gb|EGJ37013.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK49] Length = 409 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTANP 80 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE L +E+ FVQ M K G++ Sbjct: 81 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKLGGSEENFVQMMKAKLKEWGITDA 140 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 141 TIVNSTGLNTLLLEYATEETEYSASASTTKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 200 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 201 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 260 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 261 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 297 >gi|296394426|ref|YP_003659310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] gi|296181573|gb|ADG98479.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] Length = 289 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 11/217 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A + PAS K + A VV L + + T +A E Sbjct: 48 WLVADLDTGEVLASRDAHGRYRPASTIKTLLAIVVLDELDTAQKVTET------DADEVA 101 Query: 91 PSNSTFK---KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K G ++ L+ ++ S+N A A+A SL V MN + LG Sbjct: 102 DRESVVKFIRPGEVRSVYELLEATLMISSNGAANALARSLGGV-GAAVAKMNAEAARLGA 160 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 TH G+ G T+ D+A+L ++ P + + + G + N + + Sbjct: 161 LDTHAATPSGLEAPGASTSPNDLALL-FQAALRRPDFAAIVGQESAALPGAQLVNRDPLL 219 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G++ G G KTGFT + +N V +A + + L+ ++ Sbjct: 220 GSYPGMLGGKTGFTDEAQYNFVGAAARSGRRLVVAVM 256 >gi|291522262|emb|CBK80555.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7] Length = 327 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 19/225 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK++TA V +++ +T +T N FK G MTL L ++ Sbjct: 102 PASITKILTALVALENVQDLDQEVT--LTDDVNVDVADAQVCGFKAGDKMTLKTLLYCML 159 Query: 113 VKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND A A+A ++ + F MN ++ LG + THF+ +G+ HYTTA D+ Sbjct: 160 IYSGNDAANAVASAVSGGDIPAFCDKMNAEAQRLGATQTHFVTPNGLDDPDHYTTAYDLY 219 Query: 172 I-----LSWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTN-WAVGTFLGADGM-----K 217 + L + + D HY F G E++ + Y +TN + +G +G+ K Sbjct: 220 LIFNECLKYDLFKDAIHQAHYTAVFTRNGQEVQ-QTYDSTNYYLLGNKTPPEGVSIIGGK 278 Query: 218 TGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTRNKVSASLLS 261 TG T +G ++ G I+V+LG D++T + LLS Sbjct: 279 TGTTDNAGLCLILYVEDGSGNGYISVLLGCPDKDTLYSSMSKLLS 323 >gi|262038951|ref|ZP_06012291.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii F0264] gi|261747032|gb|EEY34531.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii F0264] Length = 541 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 11/229 (4%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T G +I + ASLTK+M V + + L + + + S Sbjct: 202 TKDGKIIKKELETQQHPIASLTKVMNILVALDEVDKGNVSLDDKVCFTPQNANVGGSWLN 261 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMN 154 K G L + L+ I+ SAN+ A +A + K + FV+ MN +K LG++ T F Sbjct: 262 VKVGDCYLLRDLLRSEIIYSANNSAYLVAYHVGKGNIEYFVKLMNQKAKELGMNNTEFHT 321 Query: 155 AHGVV-----QHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKK--YPNTNW 205 G+ + +TA DM ++ + D ++ ++ + G++ Y + N Sbjct: 322 PAGLPTTMTGKGMDVSTAYDMFLMGKKAIEDKRIREWASEPELVLVNPAGEQVIYKSRNH 381 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 +G + G G+KTGF +G+NI+ + G+ +I+V+LG N R K Sbjct: 382 LLGQY-GIYGLKTGFHVQAGYNIIVTGKMGNIEIISVVLGHKTHNQRTK 429 >gi|120611767|ref|YP_971445.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1] gi|120590231|gb|ABM33671.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1] Length = 371 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT ++ E K + PITI+++ + Sbjct: 117 VIDQDTQEVLLSKN-DHAVLPIASLTKLMTGLLI----SEAKLPMDEPITITQDDVDTEK 171 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+S G+T+T L L ++ S N A A+ + + FV MN ++ +G++ T Sbjct: 172 FSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVARMNAKARLIGMTET 231 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 ++ G+ H + ++ARD+A L D P G E+ G++ + NTN Sbjct: 232 RYVEPTGLSSH-NQSSARDLATLVNVAHAD-PLLRELTTSPGYEVAVGRRTLHFNNTNRL 289 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + +R Sbjct: 290 VKNPAWDIGL------QKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFSR 336 >gi|331701010|ref|YP_004397969.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] gi|329128353|gb|AEB72906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] Length = 396 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 32/242 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD NT + + + ASL+KLMT Y+V + + K ++ +T S NA Sbjct: 134 LDVNTNNNVWTKNANTARPIASLSKLMTLYLVRQKISQGKGTWSSKVTTS-NAGLKKLGK 192 Query: 94 STFKKG-----STMTLDNALKLLIVKSANDIAVAIAESLCKTE-----KKFVQHMNNTSK 143 S G ++ T+ +++S+N+ A+A+ + + KKF+ MNN +K Sbjct: 193 SNVFGGFKFNHNSYTVRQLYLAGLIESSNNAAIALGQWVAGGSTPDYNKKFIGMMNNQAK 252 Query: 144 NLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 GL + F++A G+ Q + +Y +A D+A +S D+ + Sbjct: 253 EWGLKHSSFVSASGMEQNSLAPYGYSIGASKNANYVSASDIAQISRHFVVDYNDILTDAS 312 Query: 190 IKGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAV 242 +K +++ G+ N N + L DG+KTG+T +G+ V + + G +I V Sbjct: 313 VKSMKVDGQTLHNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDRIITV 372 Query: 243 IL 244 +L Sbjct: 373 VL 374 >gi|332366179|gb|EGJ43934.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK355] Length = 422 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDATTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTANP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ SAN +A+AE + +E+ FVQ M K G++ Sbjct: 94 NISNVPLEARRYKVKDLIAASLMSSANSATIALAEKVGGSEENFVQMMKAKLKEWGITDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + YT +A D+A++S + DFPQ Sbjct: 154 TVVNSTGLNTLLLEYASEETDYTASASTSKKNKDSENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSEKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|255284449|ref|ZP_05349004.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255264994|gb|EET58199.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 403 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 42/298 (14%) Query: 2 RQFLVIIA--MAMLSNIFPFLSIAETNKLP---------YYTLLDTNTGHVIAENYPDHP 50 R+FL ++ + M+S S A T ++P L+D +G ++ + Sbjct: 6 RRFLACLSALLVMMSG-----SAAATEEVPEELKNLYAHSAVLMDGGSGRILFGKNEEEV 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 AS TK+MT + ++ + + + ++ P + + G +++ L Sbjct: 61 LPMASTTKIMTCILTLESGRQGEIAVASANAAAQ-----PKVHLGVRTGEEFYVEDLLYS 115 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-VQHG---HYTT 166 L+++S ND AV IAE + + + F MN + LG +THF+ +G+ G H TT Sbjct: 116 LMLESHNDSAVMIAEHIGGSVEGFAAMMNEKAAQLGCVSTHFVTPNGLDATDGSGTHSTT 175 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGL---------EIKGKKYPNTNWAVGTFLGADGMK 217 A D+A + + PQ + QI + + N N + G K Sbjct: 176 AADLAEIMRYCVSISPQREAFLQITQTRSYSFSNVEQSRSFSCQNHNAFMDMMEGVISGK 235 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMG---FYNKT 268 TGFT A+G+ V A++ D L V L A +R + + +A+LL G ++N+T Sbjct: 236 TGFTSAAGYCYVC-ALEDDGRLFIVALLACGWPDNRTWKWRDAAALLGYGKENYHNQT 292 >gi|255527697|ref|ZP_05394554.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296185032|ref|ZP_06853442.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|255508610|gb|EET84993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296049866|gb|EFG89290.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] Length = 376 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 23/162 (14%) Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G TMT + + L++ S ND+A IAES+ K + F MN K L L THF+ +G+ Sbjct: 64 GETMTAQDVMDGLLLYSGNDMAYVIAESVGKDDVDFANKMNEKVKQLNLKNTHFVTPNGL 123 Query: 159 VQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-------- 209 HYTTA D++ I S + + + E GK+ + GT Sbjct: 124 HDPNHYTTAYDLSNIASTAFQNPWVR----------ETMGKQKNTIKTSSGTSFVIENRN 173 Query: 210 -FLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 LG +G KTG+T +G +V + + ++ V++ ++ Sbjct: 174 KLLGKNGCIGGKTGYTSEAGKCLVTVYERDGRKILGVVMKSV 215 >gi|182438052|ref|YP_001825771.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466568|dbj|BAG21088.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 914 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 25/193 (12%) Query: 54 ASLTKLMTAYVVFS--FLKEKKAMLTTPITISKNA---SEYP-PSNSTFKKGSTMTLDNA 107 AS+ K+MTA+V+ LK + T IT+ + A S+ P S + KG +T Sbjct: 589 ASVAKVMTAHVILQEHPLKGDEEGET--ITVDQKAEDESQRPDESTAPLTKGQKLTQRQM 646 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+LL++ S N+ A +A +E F+ MN+ +K+LG++ + + + G ++ +TA Sbjct: 647 LQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSG-LEKTTVSTA 705 Query: 168 RDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 D L+ +R D P+ +IKG I GK Y N N + G G+KTG Sbjct: 706 TDQLKLAQAVMRNEVFRKIVDMPE----VEIKG--IDGKIYNNNNLLL--QPGVSGIKTG 757 Query: 220 FTCASGFNIVASA 232 + +G N++ SA Sbjct: 758 SSTPAGGNLLWSA 770 >gi|291005226|ref|ZP_06563199.1| putative penicillin-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 365 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 14/267 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +G V+A PAS K++TA V L ++ T + S Sbjct: 48 WILADVTSGEVLAARDSHARHRPASAIKVLTALVAIRDLNMSDTLVATQADADQEGSRV- 106 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ + L+++S ND A A+A L E MN + +LG T Sbjct: 107 ----GLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKLGGPEV-MTARMNELAHHLGALDT 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGT 209 G+ G ++A D+A++ +R P++ + + G P W+ Sbjct: 162 RAATPSGLDGPGMSSSAYDLALV-FRAAMQRPEFARAINTQHTVLPGPPGQPLEVWSDNA 220 Query: 210 FL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 L GA G KTGFT + +A+A + + ++AV+L N ++S+ + + Y Sbjct: 221 VLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLL--RGENQPLRLSSQTMRLLDY 278 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNI 292 T R ++ ++ + + + P + Sbjct: 279 GFTLRGRVGELVAEGALEPTTETAPVV 305 >gi|55823010|ref|YP_141451.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated [Streptococcus thermophilus CNRZ1066] gi|55738995|gb|AAV62636.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated [Streptococcus thermophilus CNRZ1066] Length = 313 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 31/164 (18%) Query: 113 VKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHG---VVQHGHY---- 164 V S+N V +A L + K++ MN SK L ++ T + NA G V G+Y Sbjct: 4 VLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQR 63 Query: 165 --------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKY-----------PNTN 204 TTARD+ I+++ +P + Y + +K G Y P N Sbjct: 64 YDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGAN 123 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G DG KTGF+ FN + + G+Q +IA+I+G+ D Sbjct: 124 YGLK---GVDGSKTGFSPEVAFNYIDTIKHGNQRMIAIIMGSGD 164 >gi|167586734|ref|ZP_02379122.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ubonensis Bu] Length = 366 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + + H P AS+TKLMTA VV + K LT I ++ +Y Sbjct: 117 VVDQNSGEPLFDKN-SHAVVPIASITKLMTAMVVL----DSKLPLTDQIEVTDEDRDYEK 171 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A +++ FV MN +K LG++ T Sbjct: 172 GTGSRLSVGSVLSREDMLHIALMASENRAAASMSRYYPGGRPAFVAAMNAKAKALGMADT 231 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G+ + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 232 HFENSTGLSSQ-NVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVYTGKRNLAYNSTNAL 289 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 W +G KTGF +G +V A D+ ++ V+L + + +R +A Sbjct: 290 IRGNNSWDIGL------QKTGFINEAGECLVMQATIHDRPMVIVLLDSFGKYSRFADAAR 343 Query: 259 L 259 L Sbjct: 344 L 344 >gi|302335807|ref|YP_003801014.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli DSM 7084] gi|301319647|gb|ADK68134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli DSM 7084] Length = 305 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 1/138 (0%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T+ VI+ N D PASL KLMT YV + + ++ A S + Sbjct: 62 TDDREVISVN-GDQRRAPASLAKLMTTYVALRHVDDLSSLAPVSSEAYARAVTGNCSMAG 120 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 F G T + + ++ S + A+++AE+ C + V MN + GL T + N Sbjct: 121 FVPGERTTFRDLMYATMLVSGGEAAMSLAENACGSTDACVAEMNEVAGQWGLRDTSYRNV 180 Query: 156 HGVVQHGHYTTARDMAIL 173 G+ G +TTARD+A L Sbjct: 181 EGLDAEGQHTTARDVASL 198 >gi|223043679|ref|ZP_03613723.1| penicillin binding protein 4 [Staphylococcus capitis SK14] gi|222442957|gb|EEE49058.1| penicillin binding protein 4 [Staphylococcus capitis SK14] Length = 388 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 23/238 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNAS 87 P L T G ++ + +PASLTK+MT Y+ +K K + I I SK A Sbjct: 47 PQSLTLTTKQGQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQ 106 Query: 88 EYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 SN + + G T T+ + L + S+N A+ + E + + F MN +K Sbjct: 107 LSQKSNLSSVPLEAGQTYTVKDILSQTALASSNAAALILGEKVSGSTSTFTDKMNQQAKT 166 Query: 145 LGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + THF + G Q +T++DM I+ + + + P+ + Q Sbjct: 167 FHMKDTHFTSPAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQN 226 Query: 191 KGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 K KG+ + +TN ++ + G DG+KTG T SG+++ + Q L IL Sbjct: 227 KSDTQKGQSFESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETIL 283 >gi|290581230|ref|YP_003485622.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans NN2025] gi|254998129|dbj|BAH88730.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans NN2025] Length = 413 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 29/236 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E D AS+TK++T Y+V+ KE K+ T + K S+YP S Sbjct: 35 VEANTGKILYEKDADTTAGIASITKMLTVYMVY---KEIKSGDLTWSSKVK-ISDYPYSL 90 Query: 94 STFKKGSTMTLDN---ALKLLIVKS----ANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + +D +K L+ S AN A+A+AE + TE KFV M + G Sbjct: 91 TKDYSASNVPMDAREYTVKELVEASMIASANSAAIALAEKVGGTEPKFVDMMKKQLQEWG 150 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ +NA G+ + + +ARD+AI++ + +FPQ + + Sbjct: 151 ITDAKLVNASGLNNKTLGDHIYPDSSSEDENMMSARDVAIVAHHLIKEFPQVLKITEKTN 210 Query: 193 LEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G K N+ + G DG+KTG T +G VA++ + LI+V+L Sbjct: 211 SDFSGNKMETYNYMLPNMPYAREGVDGLKTGTTELAGACFVATSKENGMRLISVVL 266 >gi|83719868|ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|257139857|ref|ZP_05588119.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|83653693|gb|ABC37756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 383 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 148 VVDERTGTVLIERNANCVVPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 203 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS + + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 204 TGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKHTH 263 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ +TARD++ L Sbjct: 264 FVNATGLSPRN-VSTARDLSRL 284 >gi|251792511|ref|YP_003007237.1| DacC protein [Aggregatibacter aphrophilus NJ8700] gi|247533904|gb|ACS97150.1| DacC protein [Aggregatibacter aphrophilus NJ8700] Length = 302 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 12/239 (5%) Query: 12 MLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 ML IFPFL T + Y + D V+ P+ AS+TKLMTA V FL+ Sbjct: 11 MLKKIFPFLLFMPTFVMAQSYVVYDFTHNKVLESGAPNTVRPIASVTKLMTANV---FLE 67 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 K T +++ +++ K + + LK ++V S N A A++ S T Sbjct: 68 HNKNPRCTASITNEDYDYIKGTHTKLPKYTPIACRELLKAMLVHSDNYAAHALSRSAGMT 127 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 ++F++ MN +K+LG+ +T F ++ G + + + ++A D+ L+ + P+ + Sbjct: 128 RQQFIKKMNEKAKHLGMRSTRFSDSSG-LSNSNVSSAMDLVKLA-KYSLAKPEIKALSNL 185 Query: 191 KGLEIKGKK----YPNTNWAV-GTFLGADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 I+ K NTN V A KTG+ SG+N+V +++ +++ I VI Sbjct: 186 STAYIQAGKRNIFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNSVPCNRATIGVI 244 >gi|313884857|ref|ZP_07818609.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola ACS-139-V-Col8] gi|312619548|gb|EFR30985.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola ACS-139-V-Col8] Length = 394 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 29/244 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNA 86 Y +D T V+A+ + P+ AS++K+++ Y+V+ + E K M++ I N Sbjct: 73 YIAIDQETNRVLAQQEGNKPYPIASMSKIISTYLVYQAIDEGKLSMDQMISIDPAIIDNY 132 Query: 87 SEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 + P SN ++++ L +++ S ND A+ + +E+ V M++ + Sbjct: 133 TSNPNLSNVGLVADQEYSVEDLLNGVLLSSGNDATSALMWQIYGSEEAGVNAMSDLLHSW 192 Query: 146 GLSATHFMNAHGVVQ---------------HGHYTTARDMAILSWRIKTDFPQYMHY--- 187 G++ ++ G + +A D+A+++ + TDFPQ + Sbjct: 193 GINNFKLVSVSGTPNIELAENIRIPGTGENDENTMSAADIALVAQHLITDFPQVLDITNS 252 Query: 188 --FQIK-GLEIKGKKYPNTNWAVGTFLGADG---MKTGFTCASGFNIVASAIQGDQSLIA 241 +Q K G + + N G G DG +K+GFT +G VA++ + + +IA Sbjct: 253 DSYQFKAGTDYEQTLVNNNLLRAGQEYGRDGITGLKSGFTDGAGRCFVATSTENGRKVIA 312 Query: 242 VILG 245 V +G Sbjct: 313 VTMG 316 >gi|24378762|ref|NP_720717.1| putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein [Streptococcus mutans UA159] gi|24376631|gb|AAN58023.1|AE014874_9 putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein [Streptococcus mutans UA159] Length = 414 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 29/236 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E D AS+TK++T Y+V+ KE K+ T + K S+YP S Sbjct: 36 VEANTGKILYEKDADTTAGIASITKMLTVYMVY---KEIKSGDLTWSSKVK-ISDYPYSL 91 Query: 94 STFKKGSTMTLDN---ALKLLIVKS----ANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + +D +K L+ S AN A+A+AE + TE KFV M + G Sbjct: 92 TKDYSASNVPMDAREYTVKELVEASMIASANSAAIALAEKVGGTEPKFVDMMKKQLQEWG 151 Query: 147 LSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 ++ +NA G+ + + +ARD+AI++ + +FPQ + + Sbjct: 152 ITDAKLVNASGLNNKTLGDHIYPDSSSEDENMMSARDVAIVAHHLIKEFPQVLKITEKTN 211 Query: 193 LEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G K N+ + G DG+KTG T +G VA++ + LI+V+L Sbjct: 212 SDFSGNKMETYNYMLPNMPYAREGVDGLKTGTTELAGACFVATSKENGMRLISVVL 267 >gi|325473431|gb|EGC76626.1| hypothetical protein HMPREF9353_02421 [Treponema denticola F0402] Length = 303 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 23/171 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+ NTG ++AE+ D PASLTKL+T Y ML P +P Sbjct: 103 YILIHANTGTILAESNADKIIPPASLTKLVTIYT----------MLQKPEFKDLKKVVFP 152 Query: 91 PSNS---TFKKGS---------TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 P + KG+ +++++ ++ + V S ND A+A A + +KF M Sbjct: 153 PKEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDAALAAALLTEGSLEKFTLKM 212 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 N K +GL +T F ++ G+ + TTARD A+ S +P+ + F Sbjct: 213 NEAVKTMGLKSTRFEDSSGLSEKNQ-TTARDFALFSLHYLKQYPENLKKFH 262 >gi|226951746|ref|ZP_03822210.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. ATCC 27244] gi|294648989|ref|ZP_06726437.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC 19194] gi|226837536|gb|EEH69919.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. ATCC 27244] gi|292825124|gb|EFF83879.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC 19194] Length = 354 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 22/241 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TK+MTA V + + ++ +T+ + + Sbjct: 115 VMDAQTGEVLFSKNTNTALPIASITKVMTAVVT----ADARLNMSEEVTLQQIDFAGAGG 170 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G +M L ++KS N A A+A + F MN+ +K LG++A Sbjct: 171 KNSSSTLRAGDSMNRAELLLFALMKSENPAAAALARTYPGGRTAFYAAMNSKAKQLGMTA 230 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPN 202 THF+ + G + G+ ++ARD+ IL + QY Q L + K N Sbjct: 231 THFIESTG-LHPGNVSSARDLGIL----VSAASQYGLIRQFSTTPTYDFNLGYRVLKSNN 285 Query: 203 TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN V G + + KTG+ +G +V + + V+LGA RN + +LL Sbjct: 286 TNALVRNGGW-NINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGAPSTQARNSDATNLL 344 Query: 261 S 261 + Sbjct: 345 T 345 >gi|309808134|ref|ZP_07702046.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 01V1-a] gi|308168603|gb|EFO70709.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 01V1-a] Length = 425 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN K G T+ + Sbjct: 88 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLKLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + + NW + Sbjct: 208 TKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGRNTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGSDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|295837711|ref|ZP_06824644.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74] gi|197695913|gb|EDY42846.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74] Length = 308 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 LLDT++G + D AS TK+MTA VV L K L +TI + +Y Sbjct: 44 LLDTSSGKALYSKAADTKREMASTTKVMTAAVV---LDTKGLNLDKKVTIQQAYRDYVVK 100 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S + + G +T+ L ++ S D A A+A++ + F+ MN + Sbjct: 101 KGASTADLRTGDKVTVRQLLYAALLPSGCDAAYALADTFGTGKTATARTADFIAKMNAKA 160 Query: 143 KNLGLSATHFMNAHGV-VQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGL 193 K+L ++ T + + G+ + +YTT RD ++L+ +R Sbjct: 161 KSLKMANTSYDSFDGIPTKSKNYTTPRDASLLAQHALKNSTFRTVVKAKSTKQTATASNG 220 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + NTN +G++ GA G+KTG SG +V +A + +++ VIL Sbjct: 221 NTRTYTWYNTNKLLGSYDGAIGIKTGTASGSGPCLVFAATRHGRTVAGVIL 271 >gi|327472301|gb|EGF17732.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK408] Length = 422 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G++ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKIKEWGITDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYSASASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQPNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 ILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLNVDQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|167618346|ref|ZP_02386977.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis Bt4] Length = 355 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG V+ E + AS+TKLMT+ V + +A ++ P+ +S +Y Sbjct: 120 VVDERTGTVLIERNANCVVPIASVTKLMTSMVAL----DTRAPMSRPLRVSAQDRDYEKF 175 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS + + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 176 TGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKHTH 235 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ +TARD++ L Sbjct: 236 FVNATGLSPRN-VSTARDLSRL 256 >gi|167563365|ref|ZP_02356281.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147] Length = 278 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 51 ASITKLMTAMVVV----DSKAPLTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 106 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K LG++ THF N+ G+ + ++ARD+ Sbjct: 107 MASENRAAAALSRYFPGGRPAFIAAMNAKAKALGMTDTHFENSTGLSSQ-NVSSARDLVK 165 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 166 M-VNAAYQYPLIRKFSTDRSYEVDTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 218 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 219 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 249 >gi|71906306|ref|YP_283893.1| murein-DD-endopeptidase [Dechloromonas aromatica RCB] gi|71845927|gb|AAZ45423.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Dechloromonas aromatica RCB] Length = 359 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPP 91 ++D +TG + E PD AS++KLMTA VV + K L +TI + Sbjct: 116 VIDQSTGQAMLEKQPDLVVPIASISKLMTAMVVL----DAKLDLQEVVTIGDADVDGLKG 171 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+TMT + A+ L ++ S N A ++ FVQ MN ++ LG+ + Sbjct: 172 TRSRLPVGTTMTREAAMLLALMSSENRAAHSLGRHYPGGLPAFVQAMNKKAQALGMYNSR 231 Query: 152 FMNAHGVVQHGHYTTARDMA--ILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNT---- 203 F G+ + + +TA D+A + + + QY + K +E+ G + + NT Sbjct: 232 FEEPTGLSSN-NVSTAHDLARMVAAAARYPEIRQYSTTAEAK-VELNGRIRDFHNTNALV 289 Query: 204 ---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NW +G KTG+ +G +V A D+ ++ V+L + + TR Sbjct: 290 RNDNWEIGVS------KTGYISEAGRCLVMQARVADKPVVIVLLDSNGKMTR 335 >gi|254468773|ref|ZP_05082179.1| penicillin-binding protein 7 [beta proteobacterium KB13] gi|207087583|gb|EDZ64866.1| penicillin-binding protein 7 [beta proteobacterium KB13] Length = 285 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 20/239 (8%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T K P + D ++G +I + + ASLTKLMTA V+ + L + I+K Sbjct: 33 TIKSPKAIIYDADSGDIIFQKKANEKSAIASLTKLMTAMVLI----DSNLDLNEKVKITK 88 Query: 85 -NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + + S GS +T L + ++ S N A A++ S +K FVQ MN +K Sbjct: 89 KDQDRIKGTKSRLWLGSELTRKELLSIALIASDNRAASALSNSYPGGKKAFVQAMNVKAK 148 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---------QYMHYFQIKGLE 194 LG+ T F + G + + +TA D+ ++ + +P Y Y + K + Sbjct: 149 QLGMDDTSFADPTG-LDKNNISTAIDLVKMT-QAAQQYPIIRELSTSSYYEAYIKNKKIR 206 Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + Y NTN V L D KTG+ +G ++ D+ +I V L + + TR Sbjct: 207 L---NYNNTNLLVRQGLWDIDISKTGYIREAGKCLIMQTKVMDKPIIMVFLKSYGKYTR 262 >gi|269302456|gb|ACZ32556.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila pneumoniae LPCoLN] Length = 436 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 36/245 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF--------SFLKEKKAMLTTPITISK 84 ++ ++G V + D PAS+TK+ TA + + +K K+ + + +K Sbjct: 38 VVHADSGKVFYDKDIDAVIYPASMTKIATALFILKHYPTVLDTLIKVKQDAIASITPQAK 97 Query: 85 NASEY-PPSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S Y P + GST+ L + L+V SAND A +A + C + +KF+ Sbjct: 98 KQSGYRSPPHWLETDGSTIQLHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFM 157 Query: 136 QHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQ 189 +N K +G + THF N HG+ HYTT RD+ I R P + ++ Sbjct: 158 DKLNFFLKEEIGCTHTHFNNPHGLHHPNHYTTTRDL-ISIMRCALKEPPFRGVISTTSYK 216 Query: 190 IKGLEIKGKK---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 I + G++ P + + LG KTG T +G N++ +A + ++ L+ Sbjct: 217 IGATNLHGERILSPTNKLLLPGSTYHYPPALGG---KTGTTKTAGKNLIMAAEKNNRLLV 273 Query: 241 AVILG 245 + G Sbjct: 274 TIATG 278 >gi|116332941|ref|YP_794468.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] gi|116098288|gb|ABJ63437.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] Length = 423 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 27/240 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D +G V+ + + + ASL+KL+T Y+ + + + T + +S++ + Sbjct: 45 VMDAQSGQVLYQQNANKKYPIASLSKLLTVYLTVKAINDGQIKWTDNVPMSQDLLKLSHS 104 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y S+ KKG + T+ + ++ S+N A A+ E + + KF+Q MN S++ G+ Sbjct: 105 YTYSSLRMKKGESFTVRQLVAAAMIASSNSAATALGEYVAGSNAKFIQLMNQQSRDWGID 164 Query: 149 ATHFMNAHGV----------VQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 A HF+++ G+ V G + +A+ + +++ + P Sbjct: 165 A-HFISSSGLDNTDLKDYHLVLAGTGKKEENLVSAKAITVVAQHLLAADPTITAVASKTQ 223 Query: 193 LEIKGKKYPNTNWAV---GTFLGA---DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 I G K N N + + A DG+KTG+T + A+ Q +IA ILG Sbjct: 224 ATINGTKIYNENSCLPGKSQYKKASHIDGLKTGYTENAKLCFTATYTVNGQRMIATILGG 283 >gi|229591365|ref|YP_002873484.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens SBW25] gi|229363231|emb|CAY50317.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens SBW25] Length = 307 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 41/273 (15%) Query: 8 IAMAMLSNIFPFLS----IAETNKLPYYT-----------LLDTNTGHVIAENYPDHPWN 52 I ++++S F F AET + P T L+D T VI + PD Sbjct: 3 IRLSIISLFFAFTGNFTHAAETTQAPRDTSKLQIASGSAMLVDLQTNKVIYSSNPDVVVP 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK---GSTMTLDNALK 109 AS++KLMT +V E K + I I N ++ P F + GS M L Sbjct: 63 IASVSKLMTGLIVL----EAKQNMDEYIDI--NITDTPEMKGVFSRVKIGSQMPRKEMLL 116 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + ++ S N A ++A F+ MN +K LG+++TH++ G+ H + +TARD Sbjct: 117 IALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIH-NVSTARD 175 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----------KT 218 ++ L + Y Q+ + K + N+ +G F D + KT Sbjct: 176 LSKLLAAAR----HYPLLSQLSTTKEKTVSFRKPNYTLG-FSNTDHLINRANWDIKLTKT 230 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 GFT +G +V G++ + VIL A + T Sbjct: 231 GFTNQAGHCLVLVTSMGNRPVSLVILDAFGKFT 263 >gi|323350405|ref|ZP_08086068.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis VMC66] gi|322123342|gb|EFX95020.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis VMC66] Length = 422 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGNLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G++ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGITDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|15618582|ref|NP_224868.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae CWL029] gi|15836204|ref|NP_300728.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138] gi|16752369|ref|NP_444627.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39] gi|33242029|ref|NP_876970.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae TW-183] gi|4376972|gb|AAD18811.1| D-Ala-D-Ala Carboxypeptidase [Chlamydophila pneumoniae CWL029] gi|7189011|gb|AAF37962.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39] gi|8979044|dbj|BAA98879.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138] gi|33236539|gb|AAP98627.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae TW-183] Length = 436 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 36/245 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF--------SFLKEKKAMLTTPITISK 84 ++ ++G V + D PAS+TK+ TA + + +K K+ + + +K Sbjct: 38 VVHADSGKVFYDKDIDAVIYPASMTKIATALFILKHYPTVLDTLIKVKQDAIASITPQAK 97 Query: 85 NASEY-PPSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFV 135 S Y P + GST+ L + L+V SAND A +A + C + +KF+ Sbjct: 98 KQSGYRSPPHWLETDGSTIQLHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFM 157 Query: 136 QHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQ 189 +N K +G + THF N HG+ HYTT RD+ I R P + ++ Sbjct: 158 DKLNFFLKEEIGCTHTHFNNPHGLHHPNHYTTTRDL-ISIMRCALKEPPFRGVISTTSYK 216 Query: 190 IKGLEIKGKK---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 I + G++ P + + LG KTG T +G N++ +A + ++ L+ Sbjct: 217 IGATNLHGERILSPTNKLLLPGSTYHYPPALGG---KTGTTKTAGKNLIMAAEKNNRLLV 273 Query: 241 AVILG 245 + G Sbjct: 274 TIATG 278 >gi|320010214|gb|ADW05064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces flavogriseus ATCC 33331] Length = 893 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 15/204 (7%) Query: 54 ASLTKLMTAYVVFSF----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAYV+ KE + + A+ S + K+G T L+ Sbjct: 569 ASVAKIMTAYVILQGHPITGKEDGEQIEVDAKAGEEANRPDESTAPIKEGQKYTQRQMLQ 628 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N++A +A TEK FV+ MN +K+LG++ + + + G+ T A Sbjct: 629 LLMIPSGNNVARLLARWDATTEKAFVEKMNAAAKDLGMTNSVYTDPSGLESTTRSTPADQ 688 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGF 226 + + ++ D + + EI G Y N N + G G+KTG + +G Sbjct: 689 LKLAKAVMQNDV--FREIVNMPQAEIPGIGKMIYNNNNILL--EPGVSGIKTGSSTPAGG 744 Query: 227 NIVASA---IQG-DQSLIAVILGA 246 N+V +A I G + +I ++GA Sbjct: 745 NLVWTADTVIDGKSRRIIGAVMGA 768 >gi|167835875|ref|ZP_02462758.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis MSMB43] Length = 369 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D TG + E + AS+TKLM + V + +A ++ P+ +S +Y Sbjct: 134 VVDERTGTALIEKNANRVVPIASVTKLMMSMVAL----DTRAPMSRPLRVSAQDRDYEKF 189 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S K GS ++ + L + ++ S N A A++ FV MN ++ LG+ TH Sbjct: 190 TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTH 249 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+NA G+ + +TARD++ L Sbjct: 250 FVNATGLSPR-NVSTARDLSRL 270 >gi|312961792|ref|ZP_07776290.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6] gi|311284051|gb|EFQ62634.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6] Length = 307 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D T VI + PD AS++KLMT +V E K + I I N ++ P Sbjct: 43 LVDLQTNKVIYASNPDVVVPIASVSKLMTGLIVL----EAKQNMDEYIDI--NITDTPEM 96 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + GS M L + ++ S N A ++A F+ MN +K LG+++ Sbjct: 97 KGVFSRVKIGSQMPRKEMLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTS 156 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 TH++ G+ H + +TARD++ +L++ K FP Q+ + K + N+ +G Sbjct: 157 THYVEPTGLSIH-NVSTARDLSKLLAYARK--FPMLS---QLSTTKEKTVSFRKPNYTLG 210 Query: 209 TFLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V G++ + VIL A + T Sbjct: 211 -FSNTDHLINRANWDIKLTKTGFTNQAGHCLVLVTSMGNRPVSLVILDAFGKFT 263 >gi|327468250|gb|EGF13735.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK330] Length = 422 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 116/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYTT----------------ARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y T A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYGTSASTAKKSKDAENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|327460573|gb|EGF06908.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1] Length = 422 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 31/242 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYSASASTFKKSKDTENKFSAYDLAVISRHLIMDFPQVTE 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 IL 244 +L Sbjct: 274 VL 275 >gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478] Length = 408 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 112/267 (41%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 100 WLVADLDSGAVIAARDPHGRHRPASIIKVLVAMAAINELNLNKSVAGTDDDAAAEGTKV- 158 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ L L++ S ND A A+A L + + +N + LG T Sbjct: 159 ----GVDAGGTYTVNQLLHGLLMHSGNDAAHALARQLGGMQMAL-EKINVLAAKLGGRDT 213 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +WR T DFP + + G E++ Sbjct: 214 RVATPSGLDGPGMSTSAYDIGLFYRYAWRNPTFADIVATRSYDFPGHGDH---PGYELE- 269 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + + L+AV+L TR + Sbjct: 270 ----NDNQLLYHYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLL----HGTRQPIAP 321 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + + I D Sbjct: 322 WEQAAHLLDYGFSTPAGTQVGSLIEPD 348 >gi|295838237|ref|ZP_06825170.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74] gi|197698211|gb|EDY45144.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74] Length = 1017 Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 10/201 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------SEYPPSNSTFKKGSTMTLDNA 107 AS+ K+MTAY+V KK IT+ + A S S G ++ A Sbjct: 691 ASVAKVMTAYLVLRDHPVKKGTDGASITMDQKAEDDAGLSAQNESTVPVHAGQKLSQREA 750 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +++ SAN+IA +A +EK+FV MN + +LG+ T + + G + +TA Sbjct: 751 IEAIMLASANNIARQLARWDAGSEKEFVTKMNEAANDLGMRNTTYTDPSG-LNKTTVSTA 809 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGF 226 D L ++ P + ++ E TNW + G+KTG T A+G Sbjct: 810 EDQVRLG-KVAMKDPLFREVVRMPSYE-DSNGTTQTNWNRLVPMNNTVGIKTGTTTAAGG 867 Query: 227 NIVASAIQGDQSLIAVILGAL 247 N++ +A + I+GA+ Sbjct: 868 NLLYAATKEVGGTTRTIVGAV 888 >gi|327488930|gb|EGF20727.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1058] Length = 409 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 43/248 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ + T + IS Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYSLTSNP 80 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P ++K + + + ++ S+N +A+AE + +E+ FVQ M K Sbjct: 81 NISNVPLEAKSYK------VKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKE 134 Query: 145 LGLSATHFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTD 180 G+ +N+ G+ + Y+ +A D+A++S + D Sbjct: 135 WGIKDATIVNSTGLNTLLLEYATEETEYSASASTFKKSKDTENKFSAYDLAVISRHLIMD 194 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 195 FPQVTEITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENG 254 Query: 237 QSLIAVIL 244 +I V+L Sbjct: 255 IRMITVVL 262 >gi|260587841|ref|ZP_05853754.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|331083843|ref|ZP_08332952.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542106|gb|EEX22675.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|330403268|gb|EGG82828.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium 6_1_63FAA] Length = 411 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 22/232 (9%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D +G V+ E + AS TK+MT + + L S+ A+ P Sbjct: 43 ALIDGESGRVLYEKNGEEKRPMASTTKIMTCILTL-----ESGCLEEIAEASEKAARMPK 97 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + G + + L L+++S ND AV +AE + + + F + MN ++ +G T Sbjct: 98 VHLGASVGEKFYVKDLLYSLMLESHNDSAVILAEHVGGSVEGFAEKMNEKAREIGCEDTW 157 Query: 152 FMNAHGV--------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKG 197 F+ +G+ + H TTA ++A + P + +I + + G Sbjct: 158 FITPNGLDAKEEREGEEKVHETTAENLAQIMRYCVCLSPAREEFLKITQTPSYRFSDADG 217 Query: 198 KK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K+ N N + GA KTGFT +G+ V + + ++LI +LG Sbjct: 218 KREFSCQNHNAFLSMMEGAISGKTGFTAQAGYCYVGALQRDGKTLIVALLGC 269 >gi|134103018|ref|YP_001108679.1| putative penicillin-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133915641|emb|CAM05754.1| putative penicillin-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 430 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 116/269 (43%), Gaps = 18/269 (6%) Query: 31 YTLLDTNTGHVIA--ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L D +G V+A +++ H PAS K++TA V L ++ T + S Sbjct: 113 WILADVTSGEVLAARDSHARH--RPASAIKVLTALVAIRDLNMSDTLVATQADADQEGSR 170 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 G T T++ + L+++S ND A A+A L E MN + +LG Sbjct: 171 V-----GLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKLGGPEV-MTARMNELAHHLGAL 224 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAV 207 T G+ G ++A D+A++ +R P++ + + G P W+ Sbjct: 225 DTRAATPSGLDGPGMSSSAYDLALV-FRAAMQRPEFARAINTQHTVLPGPPGQPLEVWSD 283 Query: 208 GTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 L GA G KTGFT + +A+A + + ++AV+L N ++S+ + + Sbjct: 284 NAVLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLL--RGENQPLRLSSQTMRLL 341 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 Y T R ++ ++ + + + P + Sbjct: 342 DYGFTLRGRVGELVAEGALEPTTETAPVV 370 >gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [Corynebacterium glutamicum R] gi|140844773|dbj|BAF53772.1| hypothetical protein [Corynebacterium glutamicum R] Length = 436 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 21/247 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ET + + D ++G +IA P + PAS+ K++ + V L TT +T + Sbjct: 123 ETITASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNP-----TTVVTGT 177 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +K Sbjct: 178 MEAANIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGG-DQATLEKVNALAK 236 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL---SWR-------IKTDFPQYMHYFQIKGL 193 LG T G+ G T+A DM+++ +W+ I TD + + +G Sbjct: 237 ELGTQDTFVATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGF 296 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 ++ N G G KTG+T + V +G + L AV+L + + R Sbjct: 297 QVWNDNALFMNDPDGI-----GGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRP 351 Query: 254 KVSASLL 260 A LL Sbjct: 352 WEQARLL 358 >gi|254383787|ref|ZP_04999135.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1] gi|194342680|gb|EDX23646.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1] Length = 443 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 16/205 (7%) Query: 54 ASLTKLMTAYVVFSF--LK--EKKAMLT---TPITISKNASEYPPSNSTFKKGSTMTLDN 106 S+ K MTAYV+ LK EK AM+ + K SE + +T K+G ++ + Sbjct: 120 GSVAKAMTAYVILKGHPLKKGEKGAMIDVDKAAVEDGKKESEGESTVNTLKEGGQISEYD 179 Query: 107 ALKLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 AL +++ SAN++A +A ++ FV+ MN+ +K LG++ T + + G+ + Sbjct: 180 ALAAIMIPSANNVARLLARWDAGGDQEAFVKKMNDAAKELGMTNTTYTDPSGL-DATTVS 238 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 TA D L +I + P+ + ++ + GK + N N + F G+ G+KTG T + Sbjct: 239 TAEDQVKLGLKI-VEMPELIAITRLPNWTDASGKSWRNYNDLI-PFNGSLGIKTGSTTKA 296 Query: 225 GFNIVASA----IQGDQSLIAVILG 245 G N++ +A + +Q ++ +LG Sbjct: 297 GGNLLFAAEKKVGKTNQLVVGAVLG 321 >gi|289806354|ref|ZP_06536983.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 112 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 47/92 (51%) Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDMA+ Sbjct: 9 LQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 68 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 + + D P ++ K G + N N Sbjct: 69 IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRN 100 >gi|260438393|ref|ZP_05792209.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292808979|gb|EFF68184.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 345 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 18/211 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 L+D NTG V+ + P PAS TK++T+ + + + + I++N Sbjct: 89 LVDVNTGEVLFQKNPHKKEYPASTTKILTSLIAIKYGDANSVRKVGDEVIINENNVVM-- 146 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 F++G + D A+ ++KS ND A +A V MN +K+LG + ++ Sbjct: 147 --CDFRQGDLIPFDIAIHGALMKSGNDAAAVLALFAADNMSDAVALMNKEAKSLGATESN 204 Query: 152 FMNAHGVVQHGHYTTARDM-AILSWRIK----TDFPQYMHY---FQIK---GLEIKGKKY 200 F+N HG+ HYTT D+ I + IK D M Y F K G G Y Sbjct: 205 FVNPHGLYNDNHYTTVYDLYLIFNEAIKYSKFVDTLSCMKYTGSFTRKTAYGDYSIGCSY 264 Query: 201 PNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230 N+N + G++ DG+K + +G+ VA Sbjct: 265 TNSNGFLTGSYATPDGIKV-YGGKAGYTEVA 294 >gi|291532121|emb|CBK97706.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 349 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%) Query: 53 PASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS TK++TA + E + + + + + S S S +GS++ + L + Sbjct: 110 PASTTKILTALTAIEYTAPEYEYYVGSELGLVAQDS----SMSWIAEGSSLCRNEILTAM 165 Query: 112 IVKSAND----IAVAIAESLCKTE-------KKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + S ND IAV +A L + F MN+ +K LG THF G Sbjct: 166 LAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYHD 225 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFLGAD----- 214 HYTTA DM L + I Q + + L I + N +W G L D Sbjct: 226 DEHYTTAEDM--LKFAIAATQSQTICDITCQPLAIVYDEQGNVHSWDNGNKLLTDTTIPY 283 Query: 215 ---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GMKTGFT +GF + A + ++ ++ G N R + L+ +GF Sbjct: 284 EVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGEVEN-RYADTKKLMDLGF 335 >gi|82703413|ref|YP_412979.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrosospira multiformis ATCC 25196] gi|82411478|gb|ABB75587.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Nitrosospira multiformis ATCC 25196] Length = 278 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 28/236 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPP 91 ++D G V+ D AS+TKLMTA VV + K L I I S + Sbjct: 34 VVDPQRGQVLFHKNADSVMPIASITKLMTAMVVL----DAKLPLNQEIVIDSADVDVIKY 89 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ T L+L ++ S N A A+ + FV MN + LG+ +T+ Sbjct: 90 TRSRLRVGTKFTRGELLRLALMSSENRAAAALGRTYPGGLNAFVAAMNRKAFQLGMGSTY 149 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTN 204 F+++ G + G+ +TARD+A + +R+ F + +++ + Y N+N Sbjct: 150 FVDSTG-LNSGNVSTARDLAKMVKAAHGYRLIRVFSTTAAHEVASMGKVRSRNLNYVNSN 208 Query: 205 -------WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A I G ++I V+L + +N+R Sbjct: 209 RLVRSSSWDIGI------SKTGFLSEAGRCLVMHANITGKPTII-VLLDSWGKNSR 257 >gi|311106462|ref|YP_003979315.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8] gi|310761151|gb|ADP16600.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8] Length = 331 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 18/231 (7%) Query: 24 ETNKLPYYTLL--DTNTGHVI-AENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79 E KL T+L D +T V+ A N + P AS+TKLMTA + ++T Sbjct: 86 EIGKLKSSTILVQDLDTSEVLFARN--EGAVRPIASITKLMTALTLVKAGLPMDEIITID 143 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +++ASE P S G+ ++ + L+L +V S N A A+ + FV MN Sbjct: 144 ASDTRSASELP---SRLTAGTKLSRADLLRLALVPSENSAAQALGRTYTGGSAAFVAAMN 200 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG++ + F G+ + ++ARD+ L I P Y + G+ Sbjct: 201 AEARALGMTDSSFAEPSGLSNE-NQSSARDLVKLLAAISAQ-PLISQYTGETSYQAAGQT 258 Query: 200 YPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + NTN VG L + KTG T +G +V + G ++L V+L A Sbjct: 259 FRNTNILVGRPQWDILVS---KTGTTREAGDCLVMAVKVGKRNLAMVLLNA 306 >gi|70731349|ref|YP_261090.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf-5] gi|68345648|gb|AAY93254.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens Pf-5] Length = 312 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 LLD T VI + PD AS+TKLMTA VV A L IS N S+ P Sbjct: 47 LLDLQTNKVIYSSNPDVIVPIASVTKLMTAMVVLD------AKLPLDEYISMNISDTPEM 100 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + S ++ + L + ++ S N A ++A F+ MN +K+LG++ Sbjct: 101 KGVFSRVKLNSELSRRDTLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKSLGMTH 160 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++ G+ H + +TARD++ ++ +Y ++ + K + N+ +G Sbjct: 161 TRYVEPTGLSIH-NVSTARDLS----KLLVASRKYPLLSELSTTKEKTVAFRKPNYTLG- 214 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V G++ + VIL A + T Sbjct: 215 FRNTDHLVNKEKWDIKITKTGFTNQAGHCLVLVTSMGNRPVALVILDAFGKYT 267 >gi|291558140|emb|CBL35257.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 349 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%) Query: 53 PASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS TK++TA + E + + + + + S S S +GS++ + L + Sbjct: 110 PASTTKILTALTAIEYTAPEYEYYVGSELGLVAQDS----SMSWIAEGSSLCRNEILTAM 165 Query: 112 IVKSAND----IAVAIAESLCKTE-------KKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + S ND IAV +A L + F MN+ +K LG THF G Sbjct: 166 LAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYHD 225 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFLGAD----- 214 HYTTA DM L + I Q + + L I + N +W G L D Sbjct: 226 DEHYTTAEDM--LKFAIAATQSQTICDITCQPLAIVYDEQGNVHSWDNGNKLLTDTTIPY 283 Query: 215 ---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GMKTGFT +GF + A + ++ ++ G N R + L+ +GF Sbjct: 284 EVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGEVEN-RYADTKKLMDLGF 335 >gi|142817|gb|AAA22375.1| penicillin binding protein 5 [Bacillus subtilis] Length = 396 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 29/239 (12%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-- 94 ++G ++ D AS+TK+MT Y++ + + K T E NS Sbjct: 2 SSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLS 61 Query: 95 --TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+ F Sbjct: 62 NVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKF 121 Query: 153 MNAHGVVQ---HGHY-----------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 +NA G+ HGH +A+DMA+L+ + TD+P+ + I + + Sbjct: 122 VNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFRQG 181 Query: 199 -----KYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 PN N+ + + DG+KTG T ++G +A + +I V+L A Sbjct: 182 TDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNA 240 >gi|325523666|gb|EGD01938.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. TJI49] Length = 372 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + KA +T I ++ +Y Sbjct: 123 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKAPMTDQIEVTDEDRDYEK 177 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 178 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDT 237 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 238 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPLIRQFSTDRTYEVYTGKRNLVYNSTNAL 295 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 296 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 343 >gi|89898744|ref|YP_515854.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56] gi|89332116|dbj|BAE81709.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56] Length = 433 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 45/249 (18%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------ 86 ++ ++G ++ D PAS+TK+ TA + LK+ +L IT+ ++A Sbjct: 38 VIHADSGKILYAKDIDKKIYPASMTKIATALFI---LKKHPEVLNRFITVKQDAIASITP 94 Query: 87 -----SEY-PPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEK 132 S Y P + G T+ L N ++ L++ SAND A +A + ++ Sbjct: 95 QAKKQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANTLATACSESVA 154 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +F++ +N + LG THF N HG+ HYTTARD+ RI + + + Q+ Sbjct: 155 EFMKQLNTFLRELGCEHTHFNNPHGLHHPNHYTTARDLT----RIMRECLKEPLFRQV-- 208 Query: 193 LEIKGKKYPNTNWAVGTFLG----------------ADGMKTGFTCASGFNIVASAIQGD 236 + K TN + L A G KTG T +G N++ +A + Sbjct: 209 IRTTNYKMAPTNLSQERVLNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLIFAAKKHG 268 Query: 237 QSLIAVILG 245 +S+I + G Sbjct: 269 RSIITIAAG 277 >gi|117618941|ref|YP_856986.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560348|gb|ABK37296.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 306 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 22/233 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + + TG V++E + AS+TKLMTA VV + MLT +T++ + Sbjct: 52 FVVANPRTGEVLSERNANRVMPIASITKLMTALVVLDANQRLSEMLT--VTMA-DVDRLK 108 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ + L + ++ S N A A+A + ++ F++ MN ++ LG+ +T Sbjct: 109 GTGSRLAVGSRLSRADMLHIALMSSENRAASALARNYPGGQRAFIEAMNAKARMLGMWST 168 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 F ++ G+ + ++A D+A L T +P Y + ++ GK+ Y N+N Sbjct: 169 QFSDSTGLTPR-NVSSAHDLAKLVAAAST-YPLIRQYSSTEERMVRNGKRQLHYLNSNRL 226 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + KTG+ +G +V + + +I V+L A N R Sbjct: 227 VREGSWPISLS------KTGYIREAGRCLVMATQINREPVIMVLLNADTPNAR 273 >gi|167581319|ref|ZP_02374193.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis TXDOH] gi|257138600|ref|ZP_05586862.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 364 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 137 ASITKLMTAMVVL----DSKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 192 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 193 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMNDTHFENSTGLSSQ-NVSSARDLVK 251 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 252 M-VNAAYQYPLIRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGL------QKTGFI 304 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 305 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 335 >gi|268608716|ref|ZP_06142443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens FD-1] Length = 482 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 61/280 (21%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKL 110 PASLTKL+TA V +L T +T+ +N S + G + L + L Sbjct: 127 PASLTKLLTASVALHYLSPD-----TVVTVGSEQNLVRSGSSLCLIRPGHKLKLYDLLTG 181 Query: 111 LIVKSANDIAVAIAESLCKTEKK------------FVQHMNNTSKNLGLSATHFMNAHGV 158 +++ S ND A +A + + K F + MN+ + ++G+ +HF G Sbjct: 182 MLMASGNDAAYTVAVTTARAVKPDTAMTDAQAVSYFTELMNSYASSIGMRDSHFTTPEGW 241 Query: 159 VQHGHYTTARDMAILS------WRIKTDFPQYMH--YFQIKGLEIKGKKYPNTNWAV--- 207 YTT D+ +L+ IKT Y YF + G I + NTN + Sbjct: 242 DDASQYTTVSDLLVLANHAFSIPEIKTITGTYQKKVYF-VSGENI---TWTNTNALLDPN 297 Query: 208 GTFLGAD--GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + AD G+KTG T ++G ++A+ + ++ ++V++G N R +++ +LS Sbjct: 298 SAYYCADAIGIKTGTTASAGNCLIAAFERNGKTYLSVVVGCGTGNDRYELTLKMLS---- 353 Query: 266 NKTDRKKINYIIKDFYQQNLSNEV-----PNISEEVCTTQ 300 Q ++NEV PN++E V +T Sbjct: 354 ----------------QFGVANEVKLSAAPNVTESVPSTS 377 >gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] gi|62389569|ref|YP_224971.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] gi|41324903|emb|CAF19385.1| D-ALANYL-D-ALANINE CARBOXYPEPTIDASE [Corynebacterium glutamicum ATCC 13032] Length = 436 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 21/240 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G +IA P + PAS+ K++ + V L TT +T + A+ Sbjct: 130 WMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNP-----TTVVTGTMEAANIE 184 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +G T+D L L++ S ND A +A+ L ++ ++ +N +K LG T Sbjct: 185 GSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGG-DQATLEKVNALAKELGTQDT 243 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWR-------IKTDFPQYMHYFQIKGLEIKGKKY 200 G+ G T+A DM+++ +W+ I TD + + +G ++ Sbjct: 244 FVATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNA 303 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N G G KTG+T + V +G + L AV+L + + R A LL Sbjct: 304 LFMNDPDGI-----GGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLL 358 >gi|54022905|ref|YP_117147.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152] gi|54014413|dbj|BAD55783.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152] Length = 434 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 27/248 (10%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +TG V+A P + PAS K++ A V L + +T ++ ++ + Sbjct: 119 DLDTGEVLAAKDPHGRYRPASTIKVLLAIVALRTLDLDRV-----VTGTQADADVDGTRV 173 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G T ++ LI+ S ND A AIA L +K V MN +K+L T Sbjct: 174 GIGPGGRYTNRQLMQALIMASGNDAAHAIAAQLGG-DKATVARMNEVAKSLSAFDTRAAT 232 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------------- 201 G+ G T+A D+++L +R P + + + ++ G YP Sbjct: 233 PSGLDGPGMTTSAYDLSLL-FREAMTIPLFAELIRTEQIDFPG--YPKNPLIPDDTDHPG 289 Query: 202 ----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVS 256 N N + + GA G KTGFT + VA+A + + L+ +L A R + + Sbjct: 290 FPIGNDNQLLYNYAGALGGKTGFTDDARQTFVAAAERDGRRLVVTLLKADVLPIRPWEQA 349 Query: 257 ASLLSMGF 264 A LL GF Sbjct: 350 ARLLDYGF 357 >gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S] gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi 103S] Length = 444 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +TG V+A P + PAS K++ A V L L T I S A+ Sbjct: 124 WVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELD-----LDTTIVASPEAASME 178 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ G T + ++ L+++S ND A A+A+ L E+ V MN + +LG S T Sbjct: 179 GSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGG-EQATVAKMNAKAASLGASDT 237 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------------- 197 + G+ G T+ D+A+ +R P + + G Sbjct: 238 RTASVSGLDGPGMSTSPYDLALF-FRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKPV 296 Query: 198 KKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 YP N N + + GA G KTG+T + V A + D +AV L A D Sbjct: 297 DPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAER-DGRRLAVTLMAAD 348 >gi|167619401|ref|ZP_02388032.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis Bt4] Length = 364 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 137 ASITKLMTAMVVL----DSKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 192 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 193 MASENRAAAALSRYYPGGRTAFIAAMNAKAKSLGMNDTHFENSTGLSSQ-NVSSARDLVK 251 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 252 M-VNAAYQYPLIRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGL------QKTGFI 304 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 305 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 335 >gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] Length = 379 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 21/240 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G +IA P + PAS+ K++ + V L TT +T + A+ Sbjct: 73 WMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNP-----TTVVTGTMEAANIE 127 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S +G T+D L L++ S ND A +A+ L ++ ++ +N +K LG T Sbjct: 128 GSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGG-DQATLEKVNALAKELGTQDT 186 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWR-------IKTDFPQYMHYFQIKGLEIKGKKY 200 G+ G T+A DM+++ +W+ I TD + + +G ++ Sbjct: 187 FVATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNA 246 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N G G KTG+T + V +G + L AV+L + + R A LL Sbjct: 247 LFMNDPDGI-----GGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLL 301 >gi|83719638|ref|YP_442398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|83653463|gb|ABC37526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 415 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 188 ASITKLMTAMVVL----DSKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 243 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 244 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMNDTHFENSTGLSSQ-NVSSARDLVK 302 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 303 MV-NAAYQYPLIRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGL------QKTGFI 355 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 356 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 386 >gi|229816443|ref|ZP_04446744.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM 13280] gi|229807985|gb|EEP43786.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM 13280] Length = 449 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 13/128 (10%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G V E D P AS TK+MTA V + + T+ A+ S K+ Sbjct: 67 GSVYYEREADSPIKIASTTKVMTALVALDHCDPSETL-----TVDHAAATVGESCVGLKE 121 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESL--------CKTEKKFVQHMNNTSKNLGLSAT 150 G T+TL+ AL L+V S ND+A AIA + F++ MN+ + LG + T Sbjct: 122 GDTLTLEQALTGLMVMSGNDVATAIATHVGGKIDPASADPYGTFIKAMNDRAAQLGCTDT 181 Query: 151 HFMNAHGV 158 F N HG+ Sbjct: 182 LFENPHGL 189 >gi|332359810|gb|EGJ37624.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1056] Length = 422 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTANP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|225026703|ref|ZP_03715895.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353] gi|224955964|gb|EEG37173.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353] Length = 209 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 54/98 (55%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ TG ++ E D PAS+TK+MT ++F L +K+ L +T+S++A+ Sbjct: 110 PNAILMEATTGTILYEKDADKEKPPASVTKVMTLLLIFEALSKKQITLNDTVTVSEHAAS 169 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 S + G T ++D +K + V SAND VA + S Sbjct: 170 MGGSQVFLEPGETQSVDTMIKCIAVSSANDACVAYSHS 207 >gi|56477732|ref|YP_159321.1| D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1] gi|56313775|emb|CAI08420.1| probable D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1] Length = 263 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 26/235 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-Y 89 + +++ TG VI E D AS+TKLMTA VV + L+ I I+++ + Sbjct: 14 FVVVNQATGEVILEKKSDSVLPIASITKLMTAMVVL----DGGQSLSEEIVITEDDLDTI 69 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + S G+ +T + L L ++ S N A A+ S FV+ MN ++ +GL Sbjct: 70 KGTGSRLALGTRLTREQLLHLALMSSENRAASALGRSYPGGIAAFVKAMNVKARLVGLGD 129 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG---LEIKGK--KYPNTN 204 T F ++ G + + ++ RD+ + T +P + F +EI+G+ ++ NTN Sbjct: 130 TRFSDSTG-LDPTNVSSPRDLVRMVSAAST-YP-LIRRFSTSSEDHVEIRGRMHRFGNTN 186 Query: 205 -------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + D KTG+ +G +V A +Q +I V++ + R TR Sbjct: 187 SLVRSPEWEI------DVSKTGYIREAGRCLVMQARLLNQRVIIVLMDSEGRYTR 235 >gi|290959626|ref|YP_003490808.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] gi|260649152|emb|CBG72266.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] Length = 1000 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%) Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASE--YPPSNS----TFKKGSTMTLDNA 107 S+ K MTAYV+ K IT+ +K +E Y T K+G ++ +A Sbjct: 678 SVAKAMTAYVILKDHPMKPGEKGKTITVDAKGETEGGYDKDGESTLNTVKEGDELSQYDA 737 Query: 108 LKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + +++ SAN+IA +A K +EK FV+ MN +K+LG+ T + + G+ + +T Sbjct: 738 IAAIMIPSANNIARLLARWDSKGSEKAFVKKMNAAAKDLGMKNTTYTDPSGL-KETTVST 796 Query: 167 ARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 A D A++ + TD + + ++ GKK+ N N V + A G+KTG T Sbjct: 797 AEDQVKLGNALVRMKALTDITKLPTW-----VDPSGKKWDNYNRLV-PYNNAIGIKTGST 850 Query: 222 CASGFNIVASAIQGDQSLIAVILGAL 247 A+G N++ +A Q A+++GA+ Sbjct: 851 TAAGGNLLFAATQEVGGETAIVVGAV 876 >gi|325681262|ref|ZP_08160792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] gi|324107184|gb|EGC01470.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8] Length = 468 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 17/231 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASE--Y 89 +++ +TG I + D PASLTKLMTA V+ L ++ A+ ++ A + Y Sbjct: 53 MINMDTGEEIVDINSDKEVPPASLTKLMTAVVMLDELGGDEDALKAKKMSAGTEAFDELY 112 Query: 90 PPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 ST + +++ + L ++ SA + + IA ++ +FV MN LGL Sbjct: 113 GTGASTADIQPYESVSAYDLLAANLIPSACEASNIIAVNVGGNIPRFVDMMNEKVTELGL 172 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-------MHYFQIKGLEIKGKKY 200 THF AHG+ ++++A+D+A + ++P + + + +G Sbjct: 173 KHTHFSCAHGLFTQQNFSSAKDIAKICEYALDNYPVFKELVNTTFYTMEPTDFHPEGTSL 232 Query: 201 PNTNWAVGTFLG-----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 +T++ + + G+KTG T A+G + A + + V LGA Sbjct: 233 TSTDFMINEYTDYYYSYCRGIKTGTTEAAGRCFASYATCDGATYLTVTLGA 283 >gi|330817941|ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] gi|327370334|gb|AEA61690.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] Length = 411 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEY 89 ++D TG V+ E AS++KLMTA V ++ A L I+++ ++ ++ Sbjct: 176 VVDERTGTVLLERNASQIRPIASVSKLMTAVVSL----DRHAPLARRISVTGADRDTIKF 231 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + S K GST++ + L + ++ S N A A++ FV MN ++ LG+S Sbjct: 232 --TGSRLKVGSTLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMSN 289 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 THF+NA G+ + +TARD++ L Sbjct: 290 THFVNATGLSPR-NVSTARDLSRL 312 >gi|78066908|ref|YP_369677.1| murein-DD-endopeptidase [Burkholderia sp. 383] gi|77967653|gb|ABB09033.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia sp. 383] Length = 388 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + + H P AS++KLMTA VV + K +T I ++ +Y Sbjct: 139 VVDQNSGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKTPMTDQIEVTDEDRDYEK 193 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K+LG++ T Sbjct: 194 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYAGGRPAFIAAMNAKAKSLGMTDT 253 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 254 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYEVYTGKRNLVYNSTNAL 311 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 W +G KTGF +G +V A + ++ V+L + + +R +A Sbjct: 312 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGKPMVMVLLDSFGKYSRFADAAR 365 Query: 259 L 259 L Sbjct: 366 L 366 >gi|227485595|ref|ZP_03915911.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC 51172] gi|227236461|gb|EEI86476.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC 51172] Length = 289 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 26/228 (11%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T+ V+A+N + ASLTK+MT V +++ + A E S + Sbjct: 44 TDDKEVLAKN-ENERLPMASLTKIMTVRVALKHIRDLGQIAPVDTDAYYRAVEMNASMAG 102 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 F G T T + L +++SA + A ++A ++ + KFV MN +K+L L T + NA Sbjct: 103 FNGGETTTYRDLLYATMLRSAGEAADSLAINISGSMDKFVDLMNQEAKDLKLKNTSYANA 162 Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 G+ +Y +A+D A+L IK + F K K P N G +L + Sbjct: 163 DGMDNPSNYQSAKDCAML---IKDSLKDGNFRAIFTKKDF----KTSPTVNHPDGVYLES 215 Query: 214 D----------------GMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 G K+G T +G A++ ++ I V++G Sbjct: 216 TIFYHLKKYQQNGFEIIGGKSGTTDDAGLCWATLAVKNNKEYILVVMG 263 >gi|167570535|ref|ZP_02363409.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786] Length = 363 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA LT I ++ +Y + S GS ++ ++ L + + Sbjct: 136 ASITKLMTAMVVV----DSKAPLTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 191 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K LG++ THF N+ G+ + ++ARD+ Sbjct: 192 MASENRAAAALSRYFPGGRPAFIAAMNAKAKALGMTDTHFENSTGLSSQ-NVSSARDLVK 250 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 251 M-VNAAYQYPLIRKFSTDRSYEVDTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 303 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 304 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 334 >gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium intracellulare ATCC 13950] Length = 407 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 36/267 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 97 WLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKSVAGTADDAAAEGTKV- 155 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++G T++ L L++ S ND A A+A L ++ + +N + LG T Sbjct: 156 ----GVQEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAL-EKINVLAAKLGGQDT 210 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ T DFP + + G E++ Sbjct: 211 RVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFANIVATRTFDFPGHGDH---PGYELE- 266 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + L+AV+L TR + Sbjct: 267 ----NDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL----HGTRQPIAP 318 Query: 256 ---SASLLSMGFYNKTDRKKINYIIKD 279 +A LL GF + + + D Sbjct: 319 WEQAAHLLDYGFATPQGTQVGSLVAPD 345 >gi|169351003|ref|ZP_02867941.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552] gi|169292065|gb|EDS74198.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552] Length = 342 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 24/223 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +++ + VI + D+ + AS++K+MT + + L T IT+ ++ Sbjct: 35 YIVMEASNQVVIEGSNEDYIQSVASISKIMTCILAIENMD-----LDTIITVDDTINKAW 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G ++L + L L+++S ND A+ IA+++ K KFV MN+ ++ L L T Sbjct: 90 GSGIYIHIGDKISLRDLLYGLMLRSGNDAALMIAKAVAKDVPKFVDMMNDKARELELHNT 149 Query: 151 HFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------- 201 F N G+ + +G+ +T DMA L Y H I +K K+Y Sbjct: 150 TFSNPTGLDEEDNGNQSTVYDMARLM--------AYCHQNPIFNEIVKTKEYVREDGNGT 201 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 N N + + G KTGFT + ++ A + LI V Sbjct: 202 WHNKNKLLTNYKYCIGGKTGFTKKARRTLITMARKNGLDLIIV 244 >gi|167772343|ref|ZP_02444396.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM 17241] gi|167665446|gb|EDS09576.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM 17241] Length = 516 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 18/236 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITISKNASEYPP 91 +L+ ++G + E +PASLTK+MTA V + KA T + I Sbjct: 84 MLNIDSGERVYERNSQDKIHPASLTKIMTAIVALESGHDLKAETTDLKVYIQNYIYNQQA 143 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSAT 150 +G L + L ++++S N+ ++ IA+ + + FV MN +K +G T Sbjct: 144 GGGGIYQGDQYVLYDLLNAMLIQSVNEASMMIADYIGNGSIEDFVAMMNQKAKEIGAMNT 203 Query: 151 HFMNAHG--VVQHGHYTTARDMAILSWRI--KTDFPQYM----HYFQIKGLEIKGKKYPN 202 HF N G V YTTA DMA+++ DF + + + Q +G + Sbjct: 204 HFGNPSGLYVESEESYTTAYDMALIAQYAMQNNDFAEIVSRTAYTSQPTTRYPEGITWTT 263 Query: 203 TN-------WAVGTFLGADGMKTG-FTCASGFNIVASAIQGDQSLIAVILGALDRN 250 TN W + G G+KTG N V++A + + + V LGA R+ Sbjct: 264 TNKMMIPNQWEGYYYEGIKGIKTGSLPDQDVINFVSTATRDGYTYLLVCLGAPYRS 319 >gi|307726448|ref|YP_003909661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1003] gi|307586973|gb|ADN60370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1003] Length = 415 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 20/225 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D T V+ E D AS++KLMTA V + K L P+ ++ ++ Sbjct: 178 VIDERTQTVLTEKQADTVMPIASISKLMTAVVSL----DAKHALDAPLNVTVQDQDFDKF 233 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS + + L + ++ S N A A++ FV MN ++ LG+ T Sbjct: 234 TGSRLSVGSVLPRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALGMRHTR 293 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKK-----YPNTNW 205 F+N G+ H + +TARD+A L + +P Y + L G + Y N+N Sbjct: 294 FVNGTGLSPH-NVSTARDLARLVA-AASRYPLIRAYSTDRAQLVFPGGRRASLSYHNSNA 351 Query: 206 AVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 V G D KTGF +G +V + + + V+LGA Sbjct: 352 LV---RGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGA 393 >gi|221198438|ref|ZP_03571484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2M] gi|221208885|ref|ZP_03581882.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2] gi|221171168|gb|EEE03618.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2] gi|221182370|gb|EEE14771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2M] Length = 381 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + KA +T I ++ +Y Sbjct: 132 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKAPMTEQIEVTDEDRDYEK 186 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 187 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDT 246 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 247 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPLIRKFSTDRTYEVYTGKRNLVYNSTNAL 304 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 305 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSR 352 >gi|126455216|ref|YP_001066916.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|134277355|ref|ZP_01764070.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|167824963|ref|ZP_02456434.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9] gi|217420719|ref|ZP_03452224.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226195535|ref|ZP_03791123.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|242314261|ref|ZP_04813277.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254184359|ref|ZP_04890949.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] gi|254195825|ref|ZP_04902251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|254200295|ref|ZP_04906661.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH] gi|254258254|ref|ZP_04949308.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gi|254297022|ref|ZP_04964475.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] gi|126228858|gb|ABN92398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|134251005|gb|EBA51084.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|147749891|gb|EDK56965.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH] gi|157807411|gb|EDO84581.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] gi|169652570|gb|EDS85263.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|184214890|gb|EDU11933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] gi|217396131|gb|EEC36148.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225932495|gb|EEH28494.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|242137500|gb|EES23902.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254216943|gb|EET06327.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 369 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 142 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 197 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 198 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 256 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 257 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 309 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 310 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 340 >gi|324992344|gb|EGC24265.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK405] Length = 409 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 43/248 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ + T + IS Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYTLTSNP 80 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P +K + + ++ S+N +A+AE + +E+ FVQ M K Sbjct: 81 NISNVPLEAKRYKA------KDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKE 134 Query: 145 LGLSATHFMNAHGV--------VQHGHYTT----------------ARDMAILSWRIKTD 180 G+ +N+ G+ + Y+T A D+A++S + D Sbjct: 135 WGIKDATIVNSTGLNTLLLEYATEETEYSTSASTAKKSKDTENKFSAYDLAVISRHLIMD 194 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 195 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENG 254 Query: 237 QSLIAVIL 244 +I V+L Sbjct: 255 IRMITVVL 262 >gi|312865485|ref|ZP_07725712.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei F0415] gi|311099003|gb|EFQ57220.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei F0415] Length = 411 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 154/366 (42%), Gaps = 72/366 (19%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F + + MA L+ A+ P + ++ TG ++ E P AS+TK Sbjct: 1 MKKFFISLLMAFSLLFTASLAKADDFDAPAKHAIAVEATTGKILYEKDASTPDGVASMTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++T Y+V+ + E K + + I S+Y +T + S + +D + VK + Sbjct: 61 ILTVYMVYKAIDEGKLSWNSKVKI----SDYAYDLTTNSEASNVPMD--AREYTVKELVN 114 Query: 119 IAV---------AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 A+ A+AE L E FV M K G+ +NA G+ Sbjct: 115 AALIASANSAAIALAEKLGGDEATFVDMMQAQLKQWGIKDAKLVNASGLNNSYLGDHIYP 174 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFL- 211 + +A+DMAI++ + +D+P L+I K K+ NT+ A + Sbjct: 175 GSKSDDENLMSAKDMAIIARHLISDYPDV--------LDITKKTSEKFGNTDMATFNMML 226 Query: 212 --------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLS 261 G DG+KTG T +G + VA++ + +I+V++ A D N + A+ Sbjct: 227 DGMPYAREGVDGLKTGTTELAGQSFVATSTENGMRVISVVMHADNADNNQYARFEAT--- 283 Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 K +NY+ +F NL + E +++ +I+ ++ A KE Sbjct: 284 --------NKILNYVTYNFQLTNLVVK----GESYKSSKASVIDGKSKTVPAVAKE---- 327 Query: 322 DFEKIT 327 DF+ +T Sbjct: 328 DFQVVT 333 >gi|324989891|gb|EGC21833.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK353] Length = 409 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 31/242 (12%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTIYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 80 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FVQ M K G+ Sbjct: 81 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDA 140 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 141 TIVNSTGLNTLLLEYATEETEYSASASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 200 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 201 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 260 Query: 243 IL 244 +L Sbjct: 261 VL 262 >gi|126439318|ref|YP_001059634.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 668] gi|126218811|gb|ABN82317.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] Length = 369 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 142 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 197 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 198 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 256 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 257 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 309 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 310 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 340 >gi|325695651|gb|EGD37551.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK150] Length = 422 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 116/296 (39%), Gaps = 60/296 (20%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ + T + IS Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYSLTSNP 93 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P +K + + + ++ S+N +A+AE + +E+ FVQ M K Sbjct: 94 NISNVPLEAKRYK------VKDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKE 147 Query: 145 LGLSATHFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTD 180 G+ +N+ G+ + Y+ +A D+A++S + D Sbjct: 148 WGIKDATIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMD 207 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 208 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENG 267 Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +I V+L D R +ASL+ NY+ ++F Q + E Sbjct: 268 IRMITVVLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|240851509|ref|ZP_04752260.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202] gi|240310027|gb|EER48319.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202] Length = 274 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 18/235 (7%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 I P S+A++ Y + D V+ P+ AS+TKLMTA + FL+ K Sbjct: 11 IVPSFSMAQS-----YVVYDFTHDRVLESRAPNSVQPIASVTKLMTANI---FLENNKNK 62 Query: 76 LTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 T TI++ S++ T K + ++ D LK ++V S N A A++ S T +F Sbjct: 63 NCTA-TITEADSDFIKGTGTKLPKHTPISCDELLKAMMVHSDNYAAHALSRSAGMTRPQF 121 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 +Q MN ++ LG+ +T F ++ G + + ++A D+ L+ R P+ Sbjct: 122 IQKMNEKAQQLGMRSTRFSDSSG-LSSANISSAMDLVKLA-RYSLQKPKLQELSNTPATL 179 Query: 195 IK-GKK---YPNTNWAVG-TFLGADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 ++ GK+ NT+ V A KTG+ SG+N+V + Q + + I VI Sbjct: 180 VQVGKRQVFMQNTSALVREEIFNAALNKTGYIRESGYNLVFVNKQQCNHATIGVI 234 >gi|309810092|ref|ZP_07703938.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN 2503V10-D] gi|308169591|gb|EFO71638.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN 2503V10-D] Length = 425 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + + NW + Sbjct: 208 NKNADAENELSAGDMGILIKHLLLEFPQVLDTTRISKLNFPDGRNTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|253997566|ref|YP_003049630.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera mobilis JLW8] gi|253984245|gb|ACT49103.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera mobilis JLW8] Length = 334 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 38/240 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PP 91 +L+ TG V+ + P AS+TKLMTA V+ + + + IS +Y Sbjct: 88 VLNQQTGEVLFAKNTNLPTPIASVTKLMTAMVML----DAHLPMDELLNISDEDVDYLKH 143 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L+L ++ S N A A+ + FV+ MN +K LG++A+ Sbjct: 144 TTSRLSVGTTLTRGEMLQLALMASENRAASALGRNYPGGSYAFVKAMNQKAKLLGMNASR 203 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--------LEIKGKKYP-- 201 F+++ G + + +TA D+A + HY +I+ + + G++ P Sbjct: 204 FVDSTG-LDSNNVSTAEDLAKM-------VDAAYHYAEIRQVTTLASQEITLYGRRSPLS 255 Query: 202 --NTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTN W +G KTGF +G +V A Q +I V+L + + TR Sbjct: 256 FVNTNALVRGGKWDIGL------SKTGFINEAGRCLVMQAHISGQPVIIVLLDSAGKLTR 309 >gi|302559594|ref|ZP_07311936.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus Tu4000] gi|302477212|gb|EFL40305.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus Tu4000] Length = 282 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 38/259 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--- 89 +++ TG + D + S TK+MTA VV L +K L +TI S+Y Sbjct: 32 VMNNATGKSLYTKAADTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTIQMAYSDYIVK 88 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTS 142 S++ G +T+ L L++ S D A A+A+ K F+ MN + Sbjct: 89 NNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNAEA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 +GL THF + G+ + +Y+T RD+ +I + + + I +K KKY Sbjct: 149 TKMGLKNTHFDSFDGIGKGSNYSTPRDLT----KIASSAMKSSTFRSI----VKTKKYTA 200 Query: 201 ---------------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 NTN + ++ G G+KTG + + +V +A + +++I +L Sbjct: 201 KTVTKTGSTRTMAPWTNTNTLLSSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLA 260 Query: 246 ALDRNTRNKVSASLLSMGF 264 + R + LL GF Sbjct: 261 SSSATQRETDAKKLLGYGF 279 >gi|161524312|ref|YP_001579324.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia multivorans ATCC 17616] gi|189350932|ref|YP_001946560.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC 17616] gi|221214784|ref|ZP_03587753.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD1] gi|160341741|gb|ABX14827.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia multivorans ATCC 17616] gi|189334954|dbj|BAG44024.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC 17616] gi|221165323|gb|EED97800.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD1] Length = 381 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + KA +T I ++ +Y Sbjct: 132 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKAPMTEQIEVTDEDRDYEK 186 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 187 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDT 246 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 247 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPLIRKFSTDRTYEVYTGKRNLVYNSTNAL 304 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 305 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSR 352 >gi|170767319|ref|ZP_02901772.1| penicillin-binding protein 7 [Escherichia albertii TW07627] gi|170123653|gb|EDS92584.1| penicillin-binding protein 7 [Escherichia albertii TW07627] Length = 312 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIATK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|167725751|ref|ZP_02408987.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98] Length = 281 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 34 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 89 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 90 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 149 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 150 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 206 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W +G KTG+ SG +V + ++ V+L + R++ +A L Sbjct: 207 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARL 260 Query: 260 LSM 262 +M Sbjct: 261 RTM 263 >gi|134296314|ref|YP_001120049.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4] gi|134139471|gb|ABO55214.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia vietnamiensis G4] Length = 383 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + KA +T I ++ +Y Sbjct: 134 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKAPMTDQIEVTDEDRDYEK 188 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K+LG++ T Sbjct: 189 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMNDT 248 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + ++ GK+ Y +TN Sbjct: 249 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPLIRQFSTDRTYDVNTGKRTLVYNSTNAL 306 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 307 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 354 >gi|269122254|ref|YP_003310431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella termitidis ATCC 33386] gi|268616132|gb|ACZ10500.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella termitidis ATCC 33386] Length = 496 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 15/218 (6%) Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 HP ASL K+M V + + L + + + S K G L + L Sbjct: 172 HP--TASLAKVMNILVALDQVDKGNKSLDDKVCFDQATANVGGSWLNVKAGECFVLRDLL 229 Query: 109 KLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVV-----QHG 162 + + SAN+ A +A+ + KFV+ MN +K LG+ T F G+ + Sbjct: 230 RAENIYSANNAAYLVAKHIGNGSIDKFVELMNEKAKELGMKNTKFYTPAGLPTSMTGRQL 289 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKK--YPNTNWAVGTFLGADGMK 217 +TA D+ +L+ D + + K L ++ G++ YP+ N + F G G+K Sbjct: 290 DTSTADDLYLLAMAAMKD-KRIREWAGEKELILENSLGEQIIYPSRNHLLEKF-GIWGLK 347 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 TGF SG+NI+ ++ +G+ ++AV+LG + R K+ Sbjct: 348 TGFHNLSGYNIIVTSKKGNVEIVAVVLGEVTDAARTKL 385 >gi|169839592|ref|ZP_02872780.1| D-alanyl-D-alanine carboxypeptidase [candidate division TM7 single-cell isolate TM7a] Length = 203 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 18/197 (9%) Query: 6 VIIAMAMLS-NIFPFLSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++++MA L+ + F F N Y LL D N G++I E+ AS+TK+MT+ Sbjct: 14 IVLSMAFLAMSAFSFAD--GENYHDYKALLIGDVN-GNIIKEDNSLAVRPLASVTKIMTS 70 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K + +T+S A+ P G T+ + LK I+KS+N+ A A Sbjct: 71 ILTLDKIKSGQISYDDKVTVSSKAASVP-YGVKLTAGKQYTVRDLLKATIIKSSNNAAYA 129 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILS 174 +AE + FV+ MN +++ GL + + + +G+ + G+ ARD+ L+ Sbjct: 130 LAEYVGGDVPSFVRSMNEKARSYGLDSLRYCSPNGLPPSYTGSCMDQGN---ARDLYKLA 186 Query: 175 WRIKTDFPQYMHYFQIK 191 D+ Y+++ +IK Sbjct: 187 QITLKDYSDYLNFSKIK 203 >gi|152978447|ref|YP_001344076.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus succinogenes 130Z] gi|150840170|gb|ABR74141.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus succinogenes 130Z] Length = 296 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 17/249 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ ++ A ++L + P ++A++ Y + D V+ P AS+TKLM Sbjct: 1 MRKVMLKKAFSILL-LLPSWAMAQS-----YVVYDFTHDKVLESRSPYSVQPIASVTKLM 54 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA V FL+ + T ++ +++ K + M + LK ++V S N A Sbjct: 55 TANV---FLENNRNRNCTASITDEDNDYIKGTHTRLPKYTPMPCNELLKAMLVHSDNYAA 111 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+A S + +F+ MN +K LG+ +T F ++ G+ + + ++ D+ L+ + + Sbjct: 112 HALARSAGMSRIRFIGKMNEKAKELGMKSTRFTDSSGLSSN-NVSSVMDLVKLA-KYSLN 169 Query: 181 FPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFNIV-ASAIQ 234 PQ I+ K NTN V GA KTG+ SG+N+V + Q Sbjct: 170 KPQIQALSDTSAAYIRAGKRNVFVKNTNKLVREEIFGAALNKTGYIRESGYNLVFVNKFQ 229 Query: 235 GDQSLIAVI 243 +S I VI Sbjct: 230 CRKSTIGVI 238 >gi|294629898|ref|ZP_06708458.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] gi|292833231|gb|EFF91580.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] Length = 877 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 54 ASLTKLMTAYVVFS--FLK--EKKAMLTTPITISKNASEYPPSNSTF---KKGSTMTLDN 106 S+ K MTAY++ LK E+ + T K ST K G +T Sbjct: 555 GSVAKTMTAYIILRDHPLKPGEEGPKIKVDATAEKEGGYDKGGESTLNTVKAGDFLTEKQ 614 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 AL +++ SAN+IA +A +E FV+ MN T+K LG++ T + + G+ + +T Sbjct: 615 ALSAVMIPSANNIARLLARWDAGSEAAFVEKMNATAKELGMTRTTYTDPSGLKET-TVST 673 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 A+D L + + + G+ +PN N ++ ++GA G+KTG T A+G Sbjct: 674 AQDQVKLGNAVVKNPALVAITSAASWTDPSGRNWPNYN-SLPYWIGAIGIKTGTTTAAGG 732 Query: 227 NIVASAIQ--GDQ--SLIAVILG 245 N++ +A + G Q +++ ILG Sbjct: 733 NLLFAARKKVGGQTVTVVGAILG 755 >gi|53723811|ref|YP_103337.1| D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 23344] gi|76810679|ref|YP_334127.1| peptidase [Burkholderia pseudomallei 1710b] gi|52427234|gb|AAU47827.1| D-alanyl-D-alanine endopeptidase, putative [Burkholderia mallei ATCC 23344] gi|76580132|gb|ABA49607.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b] Length = 394 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 167 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 222 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 223 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 281 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 282 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 334 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 335 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 365 >gi|167919694|ref|ZP_02506785.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215] Length = 362 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 135 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 190 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 191 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 249 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 250 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 302 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 303 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 333 >gi|53719907|ref|YP_108893.1| peptidase [Burkholderia pseudomallei K96243] gi|121599737|ref|YP_993538.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei SAVP1] gi|126450244|ref|YP_001081045.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC 10247] gi|237813026|ref|YP_002897477.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gi|238561630|ref|ZP_00441759.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|52210321|emb|CAH36300.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243] gi|121228547|gb|ABM51065.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei SAVP1] gi|126243114|gb|ABO06207.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC 10247] gi|237503680|gb|ACQ95998.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gi|238524246|gb|EEP87680.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] Length = 359 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 132 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 187 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 188 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 246 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 247 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 299 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 300 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 330 >gi|254191392|ref|ZP_04897896.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] gi|254209371|ref|ZP_04915717.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU] gi|147750144|gb|EDK57215.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU] gi|157939064|gb|EDO94734.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] Length = 362 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 135 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 190 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 191 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 249 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 250 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 302 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 303 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 333 >gi|117621185|ref|YP_858159.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562592|gb|ABK39540.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 275 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPP 91 ++D TG + + AS+TKLMTA VV ++ L +TI +N + Sbjct: 41 VMDVGTGKTLYQKNATRVRPIASITKLMTALVVLDARQD----LGQTLTIDQNDRDAIKH 96 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ ++ +AL L ++ S N +A A+A FV+ MNN +K LG+ + Sbjct: 97 TYSRVRMGTQVSRRDALHLALMSSENRMASALARHYPGGRPAFVRAMNNKAKQLGMRNSR 156 Query: 152 FMNAHGVVQHGHYTTARDMAIL-------------------SWRIKTDFPQYMHYFQIKG 192 F ++ G+ + +TA+D+A L R +T P Y F Sbjct: 157 FYDSTGLSTR-NVSTAQDLAKLIAAAYRQPLIREFTQDTSKDMRFRT--PAYSLMFNNTN 213 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +K N +W V KTGFT +G ++ A ++ L V+L ++ + T Sbjct: 214 PLVK-----NPDWDVRLS------KTGFTDEAGRCLLMRAKPDNRELAIVLLNSVGKRT 261 >gi|291531257|emb|CBK96842.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 390 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 21/290 (7%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ +TG V+ ++N +H AS TK+MTA + + K P I + Sbjct: 50 LIEADTGTVLFSKNEKEH-RQIASTTKIMTALLTLEAGEPDKEFEVDPTAI-----KVEG 103 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++ ++G +T +++ S ND A A A ++ ++ F MN ++ +G++ T+ Sbjct: 104 TSMGLREGDIVTRRALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTN 163 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIK---GLEIKGKKYPNTNWA 206 F+ G+ G Y+ A D+A+L+ DF + + K G + N+N Sbjct: 164 FVTPSGLDADGQYSCAYDLALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRILVNSNKL 223 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ++ G G+KTGFT ++ +V+ A + LIAV L A + + + A +L GF Sbjct: 224 LTSYDGCIGVKTGFTDSARRTLVSCAERDGVRLIAVTLNAPNDWSDH---AKMLDYGFEK 280 Query: 267 KT------DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 T D ++ + ++ +S E + +C QK+ I M Sbjct: 281 VTLCEMKYDSSALSLSVVGSEKETVSVECGTVKLPLCNEQKDKITAEIYM 330 >gi|124386303|ref|YP_001029035.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC 10229] gi|167000634|ref|ZP_02266445.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei PRL-20] gi|167720361|ref|ZP_02403597.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98] gi|167739353|ref|ZP_02412127.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14] gi|167816568|ref|ZP_02448248.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91] gi|167846481|ref|ZP_02471989.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210] gi|167895058|ref|ZP_02482460.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894] gi|167903445|ref|ZP_02490650.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC 13177] gi|167911694|ref|ZP_02498785.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112] gi|254177821|ref|ZP_04884476.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 10399] gi|254357958|ref|ZP_04974231.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei 2002721280] gi|124294323|gb|ABN03592.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC 10229] gi|148027085|gb|EDK85106.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei 2002721280] gi|160698860|gb|EDP88830.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 10399] gi|243063443|gb|EES45629.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei PRL-20] Length = 363 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + K+ LT I ++ +Y + S GS ++ ++ L + + Sbjct: 136 ASITKLMTAMVVL----DSKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 191 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 192 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQ-NVSSARDLVK 250 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 251 M-VNAAYQYPLIRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGL------QKTGFI 303 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V + ++ V+L + + +R Sbjct: 304 NEAGECLVMQTTIHGRPIVMVLLDSFGKYSR 334 >gi|94958259|gb|ABF47261.1| penicillin binding protein 4-like protein [Staphylococcus xylosus] Length = 326 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 35/225 (15%) Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 SN+ G T T+ L++ + S+N A+ + + + F MN +K LG+ TH Sbjct: 8 SNTKLYPGETYTVKELLQITVSNSSNAAALILGKEVSGNLSDFTDKMNKKAKALGMENTH 67 Query: 152 FMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 F+N G H + +TA+D ILS R+ D P+ + + + Sbjct: 68 FVNPTGAENHQLRDFVPKKYKSENDNTSTAKDFGILSQRVVQDTPKILDFTKQLAPTQHS 127 Query: 198 KKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD----- 248 Y N ++ + G DG+KTG + + +N + + + I+GA + Sbjct: 128 VTYYTFNHSLEGADMSLEGTDGLKTGSSDVADYNHTITTKRDGFRINQAIMGAGNYDKLG 187 Query: 249 -RNTRNKVSASLLSMGF----YNK---TDRKKIN----YIIKDFY 281 RN + +L++M F Y K +KIN ++ KD Y Sbjct: 188 GEKQRNMMGNALMNMSFDQYKYEKILSKGEQKINGKTYFVEKDLY 232 >gi|300917026|ref|ZP_07133721.1| beta-lactamase [Escherichia coli MS 115-1] gi|300415701|gb|EFJ99011.1| beta-lactamase [Escherichia coli MS 115-1] Length = 313 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV L I+ + E Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKEV--- 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ T F Sbjct: 105 YSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRF 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + N + + F Sbjct: 165 VEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 219 TNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|56807794|ref|ZP_00365645.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M49 591] Length = 267 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 36/226 (15%) Query: 108 LKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQH---GH 163 + + V S+N V IA L + F+ +N T+K LG++ THF NA G G+ Sbjct: 1 MTMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQAFQGY 60 Query: 164 Y------------TTARDMAILSWRIKTDFPQYMHYFQIKGLE-IKGKKY---------- 200 Y TTARD++ L + +P+ + + + + G Y Sbjct: 61 YNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHTYNHS 120 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 P+ + + G DG+KTG + ++ FN + +A +G LI +++G D + +N Sbjct: 121 LPDNQFGMK---GVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQN---GEF 174 Query: 260 LSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 F N K K + + +Q L VP +E Q+ Sbjct: 175 YRHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPKQQHF 220 >gi|293389974|ref|ZP_06634308.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950508|gb|EFE00627.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 293 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 21/229 (9%) Query: 12 MLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ML N+FP L +IA++ Y + D V+ P+ AS+TKLMTA V Sbjct: 1 MLKNVFPLLILLPAVAIAQS-----YVVYDFTHNKVLESGAPNTVRPIASVTKLMTANV- 54 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 FL+ K T + +++ K + ++ LK+++V S N A A++ Sbjct: 55 --FLEHNKNPRCTASITDDDFDYIKGTHTKLPKYTPISCRELLKMMLVHSDNYAAHALSR 112 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 S T +F+ MN ++ LG+ +T F ++ G+ H + + + + +K + Sbjct: 113 SAGMTRLQFIGKMNEKARQLGMKSTRFSDSSGLSNHNVSSVMDLVKLTKYSMKK--TEIK 170 Query: 186 HYFQIKGLEIKGKK----YPNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 + I +K K NTN V A KTG+ SG+N+V Sbjct: 171 AFSNISSTYVKAGKRNVFVKNTNKLVRDEMFSAAINKTGYIRESGYNLV 219 >gi|313105750|ref|ZP_07792013.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016] gi|310878515|gb|EFQ37109.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016] Length = 310 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 20/228 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D NTG V+ PD AS+TKLMTA VV +L PI IS+ SE S Sbjct: 46 DQNTGKVLYSRNPDLVVPIASITKLMTAMVVLDSKLPLDEVL--PIAISET-SEMRGVFS 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + GS ++ + L L ++ S N A ++A++ + FV+ MN + LG+ T ++ Sbjct: 103 RVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVE 162 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 G+ H + +TARD+ R+ QY Q K + + N+ +G F + Sbjct: 163 PTGLSLH-NVSTARDLT----RLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLG-FRNTN 216 Query: 215 GM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + KTGFT +G +V + V+L A + T Sbjct: 217 HLINNKTWNIQLTKTGFTNEAGHCLVMRTTINRSPVNLVVLDAFGKYT 264 >gi|239942888|ref|ZP_04694825.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239989348|ref|ZP_04710012.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 11379] gi|291446361|ref|ZP_06585751.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349308|gb|EFE76212.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 320 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 19/204 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--YPPSNSTFK--KGSTMTLDNALK 109 AS+TK+MTAYV+ + + + A++ Y +T G T L+ Sbjct: 86 ASVTKVMTAYVILKDHPMRAGAPGATVVADQRAADESYSSVETTAPVLAGREYTQRRLLE 145 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++V S N++A +A EK FV MN T+ LG+ AT + G+ T A Sbjct: 146 LMMVPSGNNVARLLARWDAGDEKAFVAKMNRTAAGLGMRATTYTGVSGMETSTRSTAADQ 205 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADG---MKTGFTCAS 224 +A+ R P + + G + NTN LG DG +KTG + + Sbjct: 206 LALA--RAAMKDPAFRQIVATASVTAPGAGVTFRNTN----KLLGHDGVIGLKTGSSTPA 259 Query: 225 GFNIVASAIQ----GDQSLIAVIL 244 G N+V + Q D+ ++ V+L Sbjct: 260 GGNLVWATRQKVAGADRLVLGVVL 283 >gi|331683812|ref|ZP_08384408.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H299] gi|331078764|gb|EGI49966.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H299] Length = 313 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|314934816|ref|ZP_07842175.1| penicillin-binding protein 4 [Staphylococcus caprae C87] gi|313652746|gb|EFS16509.1| penicillin-binding protein 4 [Staphylococcus caprae C87] Length = 388 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNAS 87 P L T G ++ + +PASLTK+MT Y+ +K K + I I SK A Sbjct: 47 PQSLTLTTKQGQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQ 106 Query: 88 EYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 SN + + G T T+ + L + S+N A+ + + + F MN +K Sbjct: 107 LSQKSNLSSVPLEAGQTYTVKDILSQTALASSNAAALILGAKVSSSTSTFTDKMNQQAKT 166 Query: 145 LGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + THF + G Q +T++DM I+ + + + P+ + Q Sbjct: 167 FHMKDTHFTSPAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQN 226 Query: 191 KGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 K KG+ + +TN ++ + G DG+KTG T SG+++ + Q L IL Sbjct: 227 KSDTQKGQSFESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETIL 283 >gi|191165362|ref|ZP_03027204.1| penicillin-binding protein 7 [Escherichia coli B7A] gi|190904525|gb|EDV64232.1| penicillin-binding protein 7 [Escherichia coli B7A] Length = 313 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV + A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLN------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|257054601|ref|YP_003132433.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM 43017] gi|256584473|gb|ACU95606.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM 43017] Length = 410 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 18/243 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG+V+A P + PASL K + A VV L ++ T K + Sbjct: 102 WLVQDLDTGYVLAAKNPHGRYRPASLIKTLLALVVLEELPPDHVVVAT-----KEDANQE 156 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + +G T+D + L++ S ND+A A+A +L + V+ MN ++ LG + T Sbjct: 157 CTCVGLVEGGEYTVDQLIHALLMHSGNDVAHALATALGGVDAA-VEKMNALAEWLGAADT 215 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYP----N 202 G+ G T+A DM+++ +R P Y K ++ G +P N Sbjct: 216 RAATPSGLDGPGMMTSAYDMSLI-FRYAMQQPAYAEAVGTKHIDFPGGPGEPDFPVYNDN 274 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS-LLS 261 WA ++ G G KTGFT + V +A + + + V+L A + R A LL Sbjct: 275 PLWA--SYEGFLGGKTGFTDDARHTYVGAAERDGRRIAVVLLQAEQQPIRVAEQAQRLLD 332 Query: 262 MGF 264 GF Sbjct: 333 YGF 335 >gi|1518782|gb|AAC46341.1| penicillin-binding protein 5 [Pseudomonas aeruginosa] Length = 311 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 20/228 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D NTG V+ PD AS+TKLMTA VV +L PI IS+ SE S Sbjct: 46 DQNTGKVLYSRNPDLVVPIASITKLMTAMVVLDSKLPLDEVL--PIAISET-SEMRGVFS 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + GS ++ + L L ++ S N A ++A++ + FV+ MN + LG+ T ++ Sbjct: 103 RVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVE 162 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 G+ H + +TARD+ R+ QY Q K + + N+ +G F + Sbjct: 163 PTGLSLH-NVSTARDLT----RLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLG-FRNTN 216 Query: 215 GM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + KTGFT +G +V + V+L A + T Sbjct: 217 HLINNKTWNIQLTKTGFTNEAGHCLVMRTTINRSPVNLVVLDAFGKYT 264 >gi|218132847|ref|ZP_03461651.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC 43243] gi|217991720|gb|EEC57724.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC 43243] Length = 417 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 119/290 (41%), Gaps = 51/290 (17%) Query: 1 MRQFLVIIAMAMLSNIFPFLS--IAETNKLP---------YYTLLDTNTGHVIAENYPDH 49 +++ L++I A+LS PF A + P Y L+D ++G V+ E Sbjct: 4 IKRLLIVIMAALLSFTIPFQYRIYAAATRTPAALSQLYARYAALIDADSGRVLFEKNGYE 63 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS TK+MT + +T+S A+ P KKG L++ L Sbjct: 64 AAPNASTTKIMTCLLALELGNPDDV-----VTVSSYAASMPDVQLNIKKGEHYRLNDLLY 118 Query: 110 LLIVKSANDIAVAIAESLCKT------------------EKKFVQ----HMNNTSKNLGL 147 L+++S ND AVAIAE + + ++ VQ MN + +G Sbjct: 119 SLMLQSHNDSAVAIAEHIASSYLDGGSYHSDAASRSSEESRRLVQIFAAAMNERAAAIGC 178 Query: 148 SATHFMNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKG----- 197 S+ HF+ +G+ H +A D+A IL+ I+ + +++H + + Sbjct: 179 SSAHFVTPNGLDAEDENGPHSISAVDLARILAVCIQNE--EFIHITRTRNYSFNNLDNTA 236 Query: 198 -KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + NTN + G KTGFT +G+ + + ++V+L Sbjct: 237 TRSVHNTNAFLDMMDGVICGKTGFTGNAGYCYTCAYASDGRRFVSVVLAC 286 >gi|91784256|ref|YP_559462.1| murein-DD-endopeptidase [Burkholderia xenovorans LB400] gi|91688210|gb|ABE31410.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia xenovorans LB400] Length = 389 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 41/261 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+G + + AS+TKLMTA VV + K +T I ++ +Y Sbjct: 140 VIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQIEVTDEDRDYEKN 195 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ TH Sbjct: 196 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKAKQLGMTDTH 255 Query: 152 FMNAHGVVQHGHYTTARDMA---------ILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 F N G+ + ++ARD+ L R TD H +++ GK+ Sbjct: 256 FENPTGLTSQ-NVSSARDLVKMVNAAYQYPLIRRFSTD-----HSYEV----YTGKRSLA 305 Query: 200 YPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 Y +TN W +G KTGF +G +V A + +I V+L + + +R Sbjct: 306 YNSTNALVRNPTWDIGL------QKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSR 359 Query: 253 NKVSASLLSMGFYNKTDRKKI 273 A+ L N D+ +I Sbjct: 360 F-ADATRLRTWLDNGGDQPRI 379 >gi|306821313|ref|ZP_07454923.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550654|gb|EFM38635.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 383 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 9/219 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYP 90 ++D ++G V+ D AS+TK++ V+ +K + + IS+ AS + Sbjct: 23 IMDYDSGAVLWSKNGDSKRTIASMTKVLAVAVILDEIKAGNLSMNDKVAISEYASAISHD 82 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P+ + F+ G T T+ L +V S+N +AI E + + F MN + +G+ Sbjct: 83 PAWAAYECFQVGETYTVKTLLTNAVVSSSNASIIAIGEHISGSTANFAIKMNTLAAKIGM 142 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTN-W 205 +F G + + TTA+ M L + + + + +K + IKG TN Sbjct: 143 EG-NFTEPSG-IDEANVTTAKSMLKLGKYMYDNHEKEIKKMTMLKEVYIKGISKEATNKL 200 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + G +G+KTG N + A +G++ LIAV + Sbjct: 201 LLNDYYGIEGLKTGAYSLDNANFIGVAKRGNKRLIAVTM 239 >gi|237733921|ref|ZP_04564402.1| serine-type D-Ala-D-Ala carboxypeptidase [Mollicutes bacterium D7] gi|229383002|gb|EEO33093.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. D7] Length = 184 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 7/145 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y +++ + VI + D+ + AS++K+MT + ++ L T IT+ ++ Sbjct: 35 YIVMEASHQIVIEGSNQDYIQSVASISKIMTCIIAIENME-----LDTIITVDDTINKAW 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G ++L + L L+++S ND AV IA+++ K KFV MN+ +K L L +T Sbjct: 90 GSGVYIHIGDKISLRDLLYGLMLRSGNDAAVMIAKAVGKEIPKFVDMMNDKAKELQLHST 149 Query: 151 HFMNAHGVVQ--HGHYTTARDMAIL 173 F N G+ + +G+ +T DMA L Sbjct: 150 TFSNPTGLDEEDNGNQSTVYDMARL 174 >gi|332093252|gb|EGI98312.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 5216-82] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|15596066|ref|NP_249560.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAO1] gi|107100327|ref|ZP_01364245.1| hypothetical protein PaerPA_01001352 [Pseudomonas aeruginosa PACS2] gi|116048793|ref|YP_792407.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893162|ref|YP_002442031.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa LESB58] gi|254239222|ref|ZP_04932545.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719] gi|254245156|ref|ZP_04938478.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192] gi|12230964|sp|P72161|PBP5_PSEAE RecName: Full=D-alanyl-D-alanine endopeptidase; Short=DD-endopeptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|9946767|gb|AAG04258.1|AE004521_9 D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1] gi|115584014|gb|ABJ10029.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|126171153|gb|EAZ56664.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719] gi|126198534|gb|EAZ62597.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192] gi|218773390|emb|CAW29202.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa LESB58] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 20/228 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D NTG V+ PD AS+TKLMTA VV +L PI IS+ SE S Sbjct: 46 DQNTGKVLYSRNPDLVVPIASITKLMTAMVVLDSKLPLDEVL--PIAISET-SEMRGVFS 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + GS ++ + L L ++ S N A ++A++ + FV+ MN + LG+ T ++ Sbjct: 103 RVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVE 162 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 G+ H + +TARD+ R+ QY Q K + + N+ +G F + Sbjct: 163 PTGLSLH-NVSTARDLT----RLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLG-FRNTN 216 Query: 215 GM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + KTGFT +G +V + V+L A + T Sbjct: 217 HLINNKTWNIQLTKTGFTNEAGHCLVMRTTINRSPVNLVVLDAFGKYT 264 >gi|320176628|gb|EFW51670.1| Murein-DD-endopeptidase [Shigella dysenteriae CDC 74-1112] Length = 297 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|332365487|gb|EGJ43247.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1059] Length = 422 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 93 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FV+ M K G+ Sbjct: 94 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVEMMKAKLKEWGIKDA 153 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 154 TIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 213 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 214 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 273 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 274 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|91774582|ref|YP_544338.1| murein-DD-endopeptidase [Methylobacillus flagellatus KT] gi|91708569|gb|ABE48497.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Methylobacillus flagellatus KT] Length = 336 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 32/237 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPI-TISKNASE 88 +++ +G V+ D ASLTKLMTA VV + EK + I T+ S Sbjct: 94 IVNQESGEVLFAKGTDIAAPIASLTKLMTAMVVLDAQQDMNEKLRITREDIDTLKGTGSR 153 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P G+T+T L+L ++ S N A A+ FV MN + LG+ Sbjct: 154 MP-------IGATLTRAEMLQLALMASENRAASALGRHYPGGLNAFVAAMNAKALQLGML 206 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGKKYP----- 201 + F + G+ + +TA D+ + R +P+ H + + G + P Sbjct: 207 HSRFADPTGL-NSANVSTAEDLVKMV-RAAYQYPEIRHVSTTTAYAVPVNGARAPLHYVN 264 Query: 202 ------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N++W +G KTG+ +G +V A G Q LI V+L + +N R Sbjct: 265 SNVLVRNSDWVIGLS------KTGYINEAGRCLVMQAEVGGQPLIIVLLDSFSKNAR 315 >gi|300821762|ref|ZP_07101907.1| beta-lactamase [Escherichia coli MS 119-7] gi|309793012|ref|ZP_07687440.1| beta-lactamase [Escherichia coli MS 145-7] gi|331678083|ref|ZP_08378758.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H591] gi|300525604|gb|EFK46673.1| beta-lactamase [Escherichia coli MS 119-7] gi|308123298|gb|EFO60560.1| beta-lactamase [Escherichia coli MS 145-7] gi|331074543|gb|EGI45863.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H591] Length = 312 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|333002850|gb|EGK22406.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-272] gi|333016854|gb|EGK36178.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-227] Length = 311 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|237745522|ref|ZP_04576002.1| murein-dd-endopeptidase, serine peptidase, merops family s11 [Oxalobacter formigenes HOxBLS] gi|229376873|gb|EEO26964.1| murein-dd-endopeptidase, serine peptidase, merops family s11 [Oxalobacter formigenes HOxBLS] Length = 431 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 42/262 (16%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 +A L N + LS+ L +LD + ++ E D AS+TKLMTA VV + Sbjct: 170 LAGLKNTYDPLSLKSNAAL----VLDESNLEILFEKNSDIALPMASITKLMTALVVVESM 225 Query: 70 KEKKAMLTT---PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++ +L + + K+ S S + G+ MT N L L ++ S N A A+ + Sbjct: 226 QDMNEILEITEEDVDVQKHTS------SRLRVGTKMTRANLLHLALMSSENRAAAALGRN 279 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL------------- 173 FV MN ++ LG+S + ++++ G + G+ +ARD+A L Sbjct: 280 YPGGISAFVNAMNIKAQVLGMSDSRYVDSSG-LSSGNIASARDLAKLVMAAAQYPILRKY 338 Query: 174 ---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 ++ D + MHY GL N W + KTG+ +G +V Sbjct: 339 STDTYYSIDDGLREMHYGNTNGL------VHNPEWHIRL------QKTGYISEAGQCLVM 386 Query: 231 SAIQGDQSLIAVILGALDRNTR 252 A+ + ++ V L + + R Sbjct: 387 QAVINGRPIVMVFLDSKGKGAR 408 >gi|116629129|ref|YP_814301.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC 33323] gi|282851112|ref|ZP_06260486.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri 224-1] gi|116094711|gb|ABJ59863.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC 33323] gi|282558064|gb|EFB63652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri 224-1] Length = 308 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 43/263 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D G+VI + AS+TKL+T Y+ +KEKK T ++ ++ N P Sbjct: 56 IDAKNGNVIYAKNANQSLPIASMTKLLTTYLTLKAIKEKKIFWDTTVSPTQEIINLGSNP 115 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S G T+ ++KSAN+ A +A ++ E F+ M + L Sbjct: 116 DYASVPLNLGQKYTVKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHN 175 Query: 150 THFMNAHGVVQH-----GHYTT------ARDMAILSWRIKTDFPQYMH-------YFQ-- 189 F+ G+ + G TT A DMAI++ ++ TD+P+ ++ YF+ Sbjct: 176 VKFVTVDGLPEKKKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNT 235 Query: 190 --------IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + GL YP DG+KTG T +G + + ++ +I Sbjct: 236 LMTNSNKMLNGLSDYDPNYP-----------VDGLKTGTTDGAGSCFTCTVDKNNKRVIT 284 Query: 242 VILGALDRNTRNKVSASLLSMGF 264 VILGA + N R + LL+ F Sbjct: 285 VILGAQNDNERFSETKKLLNYSF 307 >gi|82777384|ref|YP_403733.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae Sd197] gi|157159398|ref|YP_001463481.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E24377A] gi|161485895|ref|NP_708035.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 301] gi|161486468|ref|NP_837752.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T] gi|170679983|ref|YP_001742990.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SMS-3-5] gi|194436191|ref|ZP_03068293.1| penicillin-binding protein 7 [Escherichia coli 101-1] gi|253772938|ref|YP_003035769.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|293415418|ref|ZP_06658061.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185] gi|300818866|ref|ZP_07099071.1| beta-lactamase [Escherichia coli MS 107-1] gi|300924491|ref|ZP_07140460.1| beta-lactamase [Escherichia coli MS 182-1] gi|300929309|ref|ZP_07144783.1| beta-lactamase [Escherichia coli MS 187-1] gi|300936551|ref|ZP_07151460.1| beta-lactamase [Escherichia coli MS 21-1] gi|300955844|ref|ZP_07168185.1| beta-lactamase [Escherichia coli MS 175-1] gi|301021100|ref|ZP_07185141.1| beta-lactamase [Escherichia coli MS 69-1] gi|301325244|ref|ZP_07218762.1| beta-lactamase [Escherichia coli MS 78-1] gi|301644151|ref|ZP_07244159.1| beta-lactamase [Escherichia coli MS 146-1] gi|331642758|ref|ZP_08343893.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H736] gi|331647786|ref|ZP_08348878.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli M605] gi|331653562|ref|ZP_08354563.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli M718] gi|332278712|ref|ZP_08391125.1| conserved hypothetical protein [Shigella sp. D9] gi|405864|gb|AAA60496.1| yohB [Escherichia coli] gi|81241532|gb|ABB62242.1| penicillin-binding protein 7 [Shigella dysenteriae Sd197] gi|157081428|gb|ABV21136.1| penicillin-binding protein 7 [Escherichia coli E24377A] gi|170517701|gb|ACB15879.1| penicillin-binding protein 7 [Escherichia coli SMS-3-5] gi|194424919|gb|EDX40904.1| penicillin-binding protein 7 [Escherichia coli 101-1] gi|253323982|gb|ACT28584.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448770|gb|ACX39192.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli DH1] gi|281601593|gb|ADA74577.1| D-alanyl-D-alanine endopeptidase precursor [Shigella flexneri 2002017] gi|291433066|gb|EFF06045.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185] gi|300317311|gb|EFJ67095.1| beta-lactamase [Escherichia coli MS 175-1] gi|300398281|gb|EFJ81819.1| beta-lactamase [Escherichia coli MS 69-1] gi|300419300|gb|EFK02611.1| beta-lactamase [Escherichia coli MS 182-1] gi|300458314|gb|EFK21807.1| beta-lactamase [Escherichia coli MS 21-1] gi|300462728|gb|EFK26221.1| beta-lactamase [Escherichia coli MS 187-1] gi|300528485|gb|EFK49547.1| beta-lactamase [Escherichia coli MS 107-1] gi|300847904|gb|EFK75664.1| beta-lactamase [Escherichia coli MS 78-1] gi|301077449|gb|EFK92255.1| beta-lactamase [Escherichia coli MS 146-1] gi|315136767|dbj|BAJ43926.1| D-alanyl-D-alanine endopeptidase [Escherichia coli DH1] gi|320196004|gb|EFW70628.1| Murein-DD-endopeptidase [Escherichia coli WV_060327] gi|323961642|gb|EGB57247.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] gi|323977677|gb|EGB72763.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] gi|324114448|gb|EGC08417.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253] gi|325497949|gb|EGC95808.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ECD227] gi|330911967|gb|EGH40477.1| murein-DD-endopeptidase [Escherichia coli AA86] gi|331039556|gb|EGI11776.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli H736] gi|331043510|gb|EGI15648.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli M605] gi|331048411|gb|EGI20487.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli M718] gi|332101064|gb|EGJ04410.1| conserved hypothetical protein [Shigella sp. D9] gi|744172|prf||2014253AF yohB gene Length = 313 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|328944931|gb|EGG39089.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1087] Length = 422 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 115/296 (38%), Gaps = 60/296 (20%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ + T + IS Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYTLTSNP 93 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P +K + + ++ S+N +A+AE + +E+ FVQ M K Sbjct: 94 NISNVPLEAKRYKA------KDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKE 147 Query: 145 LGLSATHFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTD 180 G+ +N+ G+ + Y+ +A D+A++S + D Sbjct: 148 WGIKDATIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMD 207 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 208 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENG 267 Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +I V+L D R +ASL+ NY+ ++F Q + E Sbjct: 268 IRMITVVLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|323944951|gb|EGB41016.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] Length = 314 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|312973616|ref|ZP_07787788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70] gi|310332211|gb|EFP99446.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70] gi|323176971|gb|EFZ62561.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1180] Length = 311 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|167749407|ref|ZP_02421534.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702] gi|167657579|gb|EDS01709.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702] Length = 349 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%) Query: 53 PASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS TK++TA + E + + + + + S S S +GS++ + L + Sbjct: 110 PASTTKILTALTAIEYTAPEYEYYVGSELGLVAQDS----SMSWIAEGSSLCRNEILTAM 165 Query: 112 IVKSAND----IAVAIAESLCKTE-------KKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + S ND IAV +A L + F MN+ +K LG THF G Sbjct: 166 LAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYHD 225 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFLGAD----- 214 HYTTA DM L + I + + + L I + N +W G L D Sbjct: 226 DEHYTTAEDM--LQFAIAATQSRTICDITCQPLAIVYDEQGNVHSWDNGNKLLTDTTIPY 283 Query: 215 ---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 GMKTGFT +GF + A + ++ ++ G N R + L+ +GF Sbjct: 284 EVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGEVEN-RYADTKKLMDLGF 335 >gi|89108951|ref|AP_002731.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12 substr. W3110] gi|162135905|ref|NP_416638.4| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12 substr. MG1655] gi|170081757|ref|YP_001731077.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12 substr. DH10B] gi|218549549|ref|YP_002383340.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC 35469] gi|218690282|ref|YP_002398494.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a] gi|238901318|ref|YP_002927114.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952] gi|254162149|ref|YP_003045257.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606] gi|256017698|ref|ZP_05431563.1| D-alanyl-D-alanine endopeptidase [Shigella sp. D9] gi|256022181|ref|ZP_05436046.1| D-alanyl-D-alanine endopeptidase [Escherichia sp. 4_1_40B] gi|297518989|ref|ZP_06937375.1| D-alanyl-D-alanine endopeptidase [Escherichia coli OP50] gi|306814750|ref|ZP_07448912.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101] gi|307138792|ref|ZP_07498148.1| D-alanyl-D-alanine endopeptidase [Escherichia coli H736] gi|309788012|ref|ZP_07682621.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617] gi|161788972|sp|P0AFI5|PBP7_ECOLI RecName: Full=D-alanyl-D-alanine endopeptidase; Short=DD-endopeptidase; AltName: Full=Penicillin-binding protein 7; Short=PBP-7; Flags: Precursor gi|161788973|sp|P0AFI6|PBP7_SHIFL RecName: Full=D-alanyl-D-alanine endopeptidase; Short=DD-endopeptidase; AltName: Full=Penicillin-binding protein 7; Short=PBP-7; Flags: Precursor gi|24052567|gb|AAN43742.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 301] gi|30041834|gb|AAP17561.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 2457T] gi|85675248|dbj|BAE76611.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K12 substr. W3110] gi|87082054|gb|AAC75195.2| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12 substr. MG1655] gi|169889592|gb|ACB03299.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12 substr. DH10B] gi|218357090|emb|CAQ89723.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC 35469] gi|218427846|emb|CAR08759.2| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a] gi|222033896|emb|CAP76637.1| Penicillin-binding protein 7 [Escherichia coli LF82] gi|238860732|gb|ACR62730.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952] gi|242377776|emb|CAQ32539.1| penicillin-binding protein 7 [Escherichia coli BL21(DE3)] gi|253974050|gb|ACT39721.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606] gi|253978218|gb|ACT43888.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BL21(DE3)] gi|281179227|dbj|BAI55557.1| penicillin-binding protein 7 [Escherichia coli SE15] gi|305852144|gb|EFM52596.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101] gi|308924146|gb|EFP69644.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617] gi|309702448|emb|CBJ01774.1| penicillin-binding protein 7 [Escherichia coli ETEC H10407] gi|312946753|gb|ADR27580.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O83:H1 str. NRG 857C] gi|323171786|gb|EFZ57430.1| D-alanyl-D-alanine endopeptidase [Escherichia coli LT-68] gi|323187854|gb|EFZ73150.1| D-alanyl-D-alanine endopeptidase [Escherichia coli RN587/1] gi|332343912|gb|AEE57246.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMNK88] gi|333001268|gb|EGK20836.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri VA-6] gi|333001918|gb|EGK21484.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-218] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|15802684|ref|NP_288711.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 EDL933] gi|15832275|ref|NP_311048.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. Sakai] gi|74312658|ref|YP_311077.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei Ss046] gi|157161616|ref|YP_001458934.1| D-alanyl-D-alanine endopeptidase [Escherichia coli HS] gi|168764225|ref|ZP_02789232.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501] gi|168771600|ref|ZP_02796607.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486] gi|168777288|ref|ZP_02802295.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196] gi|168783704|ref|ZP_02808711.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076] gi|170019548|ref|YP_001724502.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ATCC 8739] gi|188025021|ref|ZP_02775528.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113] gi|188491726|ref|ZP_02998996.1| penicillin-binding protein 7 [Escherichia coli 53638] gi|189402480|ref|ZP_02782715.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401] gi|189405204|ref|ZP_02813943.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869] gi|189406078|ref|ZP_02826192.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508] gi|193062314|ref|ZP_03043409.1| penicillin-binding protein 7 [Escherichia coli E22] gi|194427101|ref|ZP_03059652.1| penicillin-binding protein 7 [Escherichia coli B171] gi|194431501|ref|ZP_03063793.1| penicillin-binding protein 7 [Shigella dysenteriae 1012] gi|208809227|ref|ZP_03251564.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206] gi|208813477|ref|ZP_03254806.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045] gi|208818552|ref|ZP_03258872.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042] gi|209396832|ref|YP_002271537.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115] gi|217327143|ref|ZP_03443226.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. TW14588] gi|261223412|ref|ZP_05937693.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261259038|ref|ZP_05951571.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. FRIK966] gi|291283382|ref|YP_003500200.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615] gi|293405603|ref|ZP_06649595.1| pbpG [Escherichia coli FVEC1412] gi|293410496|ref|ZP_06654072.1| conserved hypothetical protein [Escherichia coli B354] gi|293446485|ref|ZP_06662907.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088] gi|298381285|ref|ZP_06990884.1| pbpG [Escherichia coli FVEC1302] gi|300901247|ref|ZP_07119348.1| beta-lactamase [Escherichia coli MS 198-1] gi|300948233|ref|ZP_07162354.1| beta-lactamase [Escherichia coli MS 116-1] gi|331663631|ref|ZP_08364541.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA143] gi|12516442|gb|AAG57266.1|AE005445_3 penicillin-binding protein 7 [Escherichia coli O157:H7 str. EDL933] gi|13362490|dbj|BAB36444.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. Sakai] gi|73856135|gb|AAZ88842.1| penicillin-binding protein 7 [Shigella sonnei Ss046] gi|157067296|gb|ABV06551.1| penicillin-binding protein 7 [Escherichia coli HS] gi|169754476|gb|ACA77175.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli ATCC 8739] gi|187767413|gb|EDU31257.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196] gi|188015308|gb|EDU53430.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113] gi|188486925|gb|EDU62028.1| penicillin-binding protein 7 [Escherichia coli 53638] gi|188999045|gb|EDU68031.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076] gi|189355332|gb|EDU73751.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401] gi|189359688|gb|EDU78107.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486] gi|189365744|gb|EDU84160.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501] gi|189371364|gb|EDU89780.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869] gi|189376656|gb|EDU95072.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508] gi|192931980|gb|EDV84579.1| penicillin-binding protein 7 [Escherichia coli E22] gi|194414722|gb|EDX30993.1| penicillin-binding protein 7 [Escherichia coli B171] gi|194420326|gb|EDX36403.1| penicillin-binding protein 7 [Shigella dysenteriae 1012] gi|208729028|gb|EDZ78629.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206] gi|208734754|gb|EDZ83441.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045] gi|208738675|gb|EDZ86357.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042] gi|209158232|gb|ACI35665.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115] gi|209766398|gb|ACI81511.1| penicillin-binding protein 7 [Escherichia coli] gi|209766400|gb|ACI81512.1| penicillin-binding protein 7 [Escherichia coli] gi|209766402|gb|ACI81513.1| penicillin-binding protein 7 [Escherichia coli] gi|209766404|gb|ACI81514.1| penicillin-binding protein 7 [Escherichia coli] gi|209766406|gb|ACI81515.1| penicillin-binding protein 7 [Escherichia coli] gi|217319510|gb|EEC27935.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. TW14588] gi|284922120|emb|CBG35201.1| penicillin-binding protein 7 [Escherichia coli 042] gi|290763255|gb|ADD57216.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615] gi|291323315|gb|EFE62743.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088] gi|291427811|gb|EFF00838.1| pbpG [Escherichia coli FVEC1412] gi|291470964|gb|EFF13448.1| conserved hypothetical protein [Escherichia coli B354] gi|298278727|gb|EFI20241.1| pbpG [Escherichia coli FVEC1302] gi|300355321|gb|EFJ71191.1| beta-lactamase [Escherichia coli MS 198-1] gi|300452239|gb|EFK15859.1| beta-lactamase [Escherichia coli MS 116-1] gi|315061445|gb|ADT75772.1| D-alanyl-D-alanine endopeptidase [Escherichia coli W] gi|320178919|gb|EFW53882.1| Murein-DD-endopeptidase [Shigella boydii ATCC 9905] gi|320192249|gb|EFW66894.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. EC1212] gi|320199729|gb|EFW74318.1| Murein-DD-endopeptidase [Escherichia coli EC4100B] gi|320657567|gb|EFX25365.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323936749|gb|EGB33034.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] gi|324015921|gb|EGB85140.1| beta-lactamase [Escherichia coli MS 117-3] gi|324118025|gb|EGC11924.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] gi|326339477|gb|EGD63288.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1125] gi|326343939|gb|EGD67700.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1044] gi|331059430|gb|EGI31407.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA143] Length = 313 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|331668834|ref|ZP_08369682.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA271] gi|331064028|gb|EGI35939.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA271] Length = 313 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|324006491|gb|EGB75710.1| beta-lactamase [Escherichia coli MS 57-2] Length = 313 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFTNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|309805391|ref|ZP_07699440.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 09V1-c] gi|308165318|gb|EFO67552.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LactinV 09V1-c] Length = 425 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + NW + Sbjct: 208 TKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|260844741|ref|YP_003222519.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2 str. 12009] gi|257759888|dbj|BAI31385.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2 str. 12009] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|215487356|ref|YP_002329787.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str. E2348/69] gi|215265428|emb|CAS09829.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str. E2348/69] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|195935505|ref|ZP_03080887.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. EC4024] gi|209919593|ref|YP_002293677.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SE11] gi|218554700|ref|YP_002387613.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1] gi|218695746|ref|YP_002403413.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989] gi|218699256|ref|YP_002406885.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39] gi|218705663|ref|YP_002413182.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026] gi|254794027|ref|YP_003078864.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. TW14359] gi|260856108|ref|YP_003229999.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11 str. 11368] gi|260868837|ref|YP_003235239.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H- str. 11128] gi|307311286|ref|ZP_07590930.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli W] gi|209912852|dbj|BAG77926.1| penicillin-binding protein 7 [Escherichia coli SE11] gi|218352478|emb|CAU98255.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989] gi|218361468|emb|CAQ99057.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1] gi|218369242|emb|CAR16999.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39] gi|218432760|emb|CAR13654.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026] gi|226237489|dbj|BAH47011.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7] gi|254593427|gb|ACT72788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. TW14359] gi|257754757|dbj|BAI26259.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11 str. 11368] gi|257765193|dbj|BAI36688.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H- str. 11128] gi|306908792|gb|EFN39289.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli W] gi|320641200|gb|EFX10678.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. G5101] gi|320646588|gb|EFX15499.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str. 493-89] gi|320651843|gb|EFX20218.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str. H 2687] gi|320663173|gb|EFX30482.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str. USDA 5905] gi|320667924|gb|EFX34827.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str. LSU-61] gi|323152361|gb|EFZ38650.1| D-alanyl-D-alanine endopeptidase [Escherichia coli EPECa14] gi|323161762|gb|EFZ47643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E128010] gi|323184242|gb|EFZ69619.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1357] gi|323377974|gb|ADX50242.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia coli KO11] gi|332092625|gb|EGI97696.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 155-74] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|296390777|ref|ZP_06880252.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAb1] Length = 310 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 20/228 (8%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D NTG V+ PD AS+TKLMTA VV +L PI IS+ SE S Sbjct: 46 DQNTGKVLYSRNPDLVVPIASITKLMTAMVVLDSKLPLDEVL--PIAISET-SEMRGVFS 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + GS ++ + L L ++ S N A ++A++ + FV+ MN + LG+ T ++ Sbjct: 103 RVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVE 162 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214 G+ H + +TARD+ R+ QY Q K + + N+ +G F + Sbjct: 163 PTGLSLH-NVSTARDLT----RLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLG-FRNTN 216 Query: 215 GM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + KTGFT +G +V + V+L A + T Sbjct: 217 HLINNKTWNIQLTKTGFTNEAGHCLVMRTTINRNPVNLVVLDAFGKYT 264 >gi|323972881|gb|EGB68079.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] Length = 314 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|323341764|ref|ZP_08081997.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464189|gb|EFY09382.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 434 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 14/175 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY---------YTLLDTNTGHVIAENYPDHPW 51 M+Q +V+ + + + + P + + +P Y L+D TG +AE D Sbjct: 1 MKQKIVLTFLLLTATLLPIKADGNHDLIPIYDLDLQSQNYILVDPKTGQTLAEKNHDASI 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPP--SNSTFKKGSTMTLDNAL 108 +PAS+TK++T L E L T TI E P S + F++G +TL++ L Sbjct: 61 HPASITKVLTVITAIEALGE--TSLDTLYTIPPEVFEGLDPIASVAGFQEGDQVTLNDLL 118 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 +++ S D AI+ L +K V MN ++ +G+ +HF+N G+ H Sbjct: 119 HGIMLPSGADATRAISSYLTHDPEKLVVKMNRLAQRIGMKNSHFVNTSGLDDPKH 173 >gi|327462875|gb|EGF09197.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK1057] Length = 422 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 115/296 (38%), Gaps = 60/296 (20%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--------- 84 +D +G ++ E + P S+T L+T Y+V+ + T + IS Sbjct: 34 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYTLTSNP 93 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N S P +K + + ++ S+N +A+AE + +E+ FVQ M K Sbjct: 94 NISNVPLEAKRYKA------KDLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKE 147 Query: 145 LGLSATHFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTD 180 G+ +N+ G+ + Y+ +A D+A++S + D Sbjct: 148 WGIKDATIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMD 207 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGD 236 FPQ +I G N N+ + F G DG+K G + G + VA+ + Sbjct: 208 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENG 267 Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +I V+L D R +ASL+ NY+ ++F Q + E Sbjct: 268 IRMITVVLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 310 >gi|323168727|gb|EFZ54407.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei 53G] Length = 298 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|283785939|ref|YP_003365804.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168] gi|282949393|emb|CBG89005.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168] Length = 308 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYANHPDLVRPIASITKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG+S Sbjct: 99 KGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMSH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ R+ QY Q+ + N + + Sbjct: 159 TRFVEPTGLSIH-NVSTARDLT----RLLIASKQYPLIGQLSTTREDMATFSNPAYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTLINNKPVALVVMDAFGKYT 265 >gi|166031844|ref|ZP_02234673.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC 27755] gi|166028297|gb|EDR47054.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC 27755] Length = 367 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNST--FKKGSTMTLDNAL 108 PAS TK++TA V + L+ +T++ A ++ T K G +TL++ L Sbjct: 143 PASTTKILTALVAL-----ENGNLSDTVTVADEADSGKFAADEQTCGIKAGDQLTLEDLL 197 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L++ S ND AVAIA+ + + +KF + MN +K L + +HF+N G+ HYTTA Sbjct: 198 NGLLLYSGNDNAVAIADHIAGSTEKFAEMMNAEAKKLMATNSHFVNPSGLHDDNHYTTAY 257 Query: 169 DM-AILSWRIK-TDFPQYM-------HYFQIKGLEIKGKKYPNTNWAVGTFLGAD----- 214 D+ I + IK DF + + H G + K P +A G D Sbjct: 258 DLYLIFNECIKHDDFVKIINSSSYTAHITGADGTKRDVKWEPTNYYAKGEATPPDNVTII 317 Query: 215 GMKTGFTCASG-FNIVASAIQGDQSLIAVILGA 246 G KTG T +G I+ + I++I+GA Sbjct: 318 GGKTGTTKGAGNCLILLTKDSSGNPYISIIMGA 350 >gi|193070497|ref|ZP_03051437.1| penicillin-binding protein 7 [Escherichia coli E110019] gi|192956191|gb|EDV86654.1| penicillin-binding protein 7 [Escherichia coli E110019] gi|315615372|gb|EFU96004.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 3431] gi|332765942|gb|EGJ96152.1| penicillin-binding protein 7 [Shigella flexneri 2930-71] gi|333016619|gb|EGK35948.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-304] Length = 297 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|312873554|ref|ZP_07733601.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2052A-d] gi|311090807|gb|EFQ49204.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2052A-d] Length = 385 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ +K K T + S+ A S+ P SN + G T+ + Sbjct: 48 ASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 107 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 108 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 167 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + NW + Sbjct: 168 TKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 227 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 228 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 287 Query: 263 GFYN 266 FYN Sbjct: 288 YFYN 291 >gi|331673660|ref|ZP_08374423.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA280] gi|331068933|gb|EGI40325.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA280] Length = 324 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|301024377|ref|ZP_07188066.1| beta-lactamase [Escherichia coli MS 196-1] gi|299880474|gb|EFI88685.1| beta-lactamase [Escherichia coli MS 196-1] Length = 291 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|206560567|ref|YP_002231332.1| D-alanyl-D-alanine endopeptidase [Burkholderia cenocepacia J2315] gi|198036609|emb|CAR52506.1| D-alanyl-D-alanine endopeptidase (penicillin-binding protein precursor) [Burkholderia cenocepacia J2315] Length = 388 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 139 VVDQNSGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKSPMTDQLEVTDEDRDYEK 193 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K+LG++ T Sbjct: 194 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDT 253 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 254 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYEVYTGKRNLVYNSTNAL 311 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 312 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 359 >gi|315634259|ref|ZP_07889546.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis ATCC 33393] gi|315476849|gb|EFU67594.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis ATCC 33393] Length = 292 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 12/209 (5%) Query: 42 IAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 I E+ H P AS+TKLMTA V FL+ K T +++A +++ + + Sbjct: 31 ILESSSPHSVRPIASVTKLMTANV---FLEHNKNARCTASITAEDADHIKGTSTKLPRYT 87 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 ++ + LK ++V S N A A++ S + ++F++ MN+ ++ LG+++THF ++ G + Sbjct: 88 PISCNELLKAMLVHSDNYAAHALSRSAGMSRQQFIKKMNDKARALGMTSTHFSDSSG-LS 146 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWAV-GTFLGADG 215 + + ++ D+ L+ + + + I I+ GK+ NTN V A Sbjct: 147 NSNVSSVMDLVKLA-KYSLNNAEIKRLSNISSTYIQTGKRNIFVKNTNKLVRDEMFSAAI 205 Query: 216 MKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 KTG+ SG+N+V + + +++ I VI Sbjct: 206 NKTGYIRESGYNLVFVNKVPCNRATIGVI 234 >gi|332754764|gb|EGJ85129.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 4343-70] Length = 301 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 35 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 88 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 89 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 148 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 149 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 202 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 203 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 255 >gi|170691174|ref|ZP_02882340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia graminis C4D1M] gi|170144423|gb|EDT12585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia graminis C4D1M] Length = 410 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 18/224 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D T V+ E D AS++KLMTA V + + L P+ ++ ++ Sbjct: 174 VVDERTQTVLTEKQADRVMPIASVSKLMTAVVAL----DTRHALDAPLNVTVQDQDFDKF 229 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ + L + ++ S N A A++ FV MN ++ LG+ T Sbjct: 230 TGSRLSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALGMRHTS 289 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY------FQIKGLEIKGKKYPNTNW 205 F+N G+ H + +TARD+A L + +P Y + G Y N+N Sbjct: 290 FVNGTGLSPH-NVSTARDLARLVA-AASRYPLIRAYSTDRDQWVFPGGPRARLSYHNSNA 347 Query: 206 AVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGA 246 V + G + KTGF +G +V I + + V+LGA Sbjct: 348 LVRS--GDRSIVLQKTGFINEAGHCVVVRMIVHGRPIDIVVLGA 389 >gi|325686780|gb|EGD28805.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis SK72] Length = 409 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90 +D +G ++ E + P S+T L+T Y+V+ + T + IS N + P Sbjct: 21 VDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNP 80 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ + + + + ++ S+N +A+AE + +E+ FV+ M K G+ Sbjct: 81 NISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSEENFVEMMKAKLKEWGIKDA 140 Query: 151 HFMNAHGV--------VQHGHYT----------------TARDMAILSWRIKTDFPQYMH 186 +N+ G+ + Y+ +A D+A++S + DFPQ Sbjct: 141 TIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTD 200 Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +I G N N+ + F G DG+K G + G + VA+ + +I V Sbjct: 201 ITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITV 260 Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +L D R +ASL+ NY+ ++F Q + E Sbjct: 261 VLDVEQTDGDPYARFVATASLM-------------NYVSQNFTQTTIVAE 297 >gi|313651237|gb|EFS15635.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T] gi|332755752|gb|EGJ86113.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-671] gi|332756170|gb|EGJ86521.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2747-71] Length = 300 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 35 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 88 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 89 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 148 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 149 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 202 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 203 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 255 >gi|218559053|ref|YP_002391966.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88] gi|218365822|emb|CAR03562.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88] gi|307626324|gb|ADN70628.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UM146] Length = 310 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|110806113|ref|YP_689633.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 5 str. 8401] gi|110615661|gb|ABF04328.1| penicillin-binding protein 7 [Shigella flexneri 5 str. 8401] Length = 310 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae TN] gi|221229769|ref|YP_002503185.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae Br4923] gi|13092840|emb|CAC30200.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae] gi|219932876|emb|CAR70785.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae Br4923] Length = 411 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 22/245 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D N+G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 107 WLVADLNSGAVIAARDPHGRHRPASIIKVLLAMASINTLNLNKSVAGTAEDAAAEGTKV- 165 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ L L+++S ND A ++A L ++ Q +N + LG T Sbjct: 166 ----GVHDGGTYTINQLLHGLLMQSGNDAAHSLAMQLGGMQQAL-QKINVLAAKLGGQDT 220 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYP-----NTN 204 G+ G T+A D+ + +R P + + + G +P N N Sbjct: 221 RVATPSGLDGPGMSTSAYDIGLF-YRYAWQNPSFSNIVATRTFNFPGPGDHPGYQLENDN 279 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----SASL 259 + + GA G KTG+T +G V +A + + L+AV+L TR + +A L Sbjct: 280 QLLYQYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLL----HGTRQPIAPWEQAAHL 335 Query: 260 LSMGF 264 L GF Sbjct: 336 LDYGF 340 >gi|302552148|ref|ZP_07304490.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] gi|302469766|gb|EFL32859.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] Length = 930 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 8/218 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFK--KGSTMTLDNALK 109 AS+ K+MTAY++ K I I + A + + ST KG +T AL+ Sbjct: 608 ASVAKVMTAYLILREHPLKSGAPGPKIEIDQAAEDQSDAGQESTVDVTKGDKITQREALE 667 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN+IA +A +EK FVQ MN+ +K+LG+ T + + G + + +TA D Sbjct: 668 SILIASANNIARLLARWDAGSEKSFVQKMNDAAKDLGMKNTTYTDPSG-LNNTTVSTAVD 726 Query: 170 MAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 L+ + P + + ++ KG K+ N N VG + G+KTG T ++ N+ Sbjct: 727 QVKLA-KAAMQQPAFREVAAMMSYVDYKGTKHDNWNRLVG-YNDVTGIKTGTTTSALGNL 784 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 V +A + I+GA+ R ++L + Sbjct: 785 VFAAKKDVDGETRRIIGAVVRQPAGGPDNTILGAALHE 822 >gi|319936455|ref|ZP_08010871.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1] gi|319808570|gb|EFW05122.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1] Length = 337 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 12/233 (5%) Query: 19 FLSIAETNKLPY----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 F+S+ + + + Y ++DT V+ + + AS++K+MTA V + Sbjct: 12 FMSVTPIHAMDFSGKSYIVMDTFNKTVLEAKNEHYVQSVASISKIMTAIVAI-----ENG 66 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L I + ++ S G + L + L L+++S ND A IA+++ F Sbjct: 67 NLDDEYEIGEEVNQAWGSGVYIHIGDHINLRDLLHGLLLRSGNDAANVIAKNIGGDIPHF 126 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQH--GHYTTARDMAIL-SWRIKTDFPQYMHYFQIK 191 V+ MN +K++G++ + F NA G+ + G+ ++A DMA+L S+ + + Q Sbjct: 127 VEMMNKKAKDIGMNDSVFSNATGLDEEDAGNRSSAYDMALLMSYCSQNPIFNDIVMKQTY 186 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 E G + N N + + G KTGFT + +V AI+ D SL+ V L Sbjct: 187 KREDGGGTWHNKNRLLEEYEYCVGGKTGFTKKARRTLVTRAIKNDVSLVIVTL 239 >gi|296158343|ref|ZP_06841174.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. Ch1-1] gi|295891287|gb|EFG71074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. Ch1-1] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 41/261 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+G + + AS+TKLMTA VV + K +T I ++ +Y Sbjct: 166 VIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQIEVTDEDRDYEKN 221 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN ++ LG++ TH Sbjct: 222 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKARQLGMTDTH 281 Query: 152 FMNAHGVVQHGHYTTARDMA---------ILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 F N G+ + ++ARD+ L R TD H +++ GK+ Sbjct: 282 FENPTGLTSQ-NVSSARDLVKMVNAAYQYPLIRRFSTD-----HSYEV----YTGKRSLA 331 Query: 200 YPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 Y +TN W +G KTGF +G +V A + +I V+L + + +R Sbjct: 332 YNSTNALVRNPTWDIGL------QKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSR 385 Query: 253 NKVSASLLSMGFYNKTDRKKI 273 A+ L N D+ +I Sbjct: 386 -FADATRLRTWLDNGGDQPRI 405 >gi|91211421|ref|YP_541407.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UTI89] gi|110642343|ref|YP_670073.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 536] gi|117624337|ref|YP_853250.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1] gi|237704597|ref|ZP_04535078.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA] gi|300981491|ref|ZP_07175572.1| beta-lactamase [Escherichia coli MS 200-1] gi|331658214|ref|ZP_08359176.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA206] gi|91072995|gb|ABE07876.1| penicillin-binding protein 7 precursor (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli UTI89] gi|110343935|gb|ABG70172.1| D-alanyl-D-alanine- endopeptidase [Escherichia coli 536] gi|115513461|gb|ABJ01536.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1] gi|226900963|gb|EEH87222.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA] gi|294492842|gb|ADE91598.1| penicillin-binding protein 7 [Escherichia coli IHE3034] gi|300307564|gb|EFJ62084.1| beta-lactamase [Escherichia coli MS 200-1] gi|315285794|gb|EFU45234.1| beta-lactamase [Escherichia coli MS 110-3] gi|315299372|gb|EFU58624.1| beta-lactamase [Escherichia coli MS 16-3] gi|323951931|gb|EGB47805.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323955899|gb|EGB51652.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] gi|331056462|gb|EGI28471.1| penicillin-binding protein 7 (PBP-7) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Escherichia coli TA206] Length = 313 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|323940796|gb|EGB36984.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] Length = 337 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] Length = 444 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +TG V+A P + PAS K++ A V L L T I + A+ Sbjct: 124 WVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELD-----LDTTIVANPEAASME 178 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ G T + ++ L+++S ND A A+A+ L E+ V MN + +LG S T Sbjct: 179 GSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGG-EQATVAKMNAKAASLGASDT 237 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------------- 197 + G+ G T+ D+A+ +R P + + G Sbjct: 238 RTASVSGLDGPGMSTSPYDLALF-FRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKPV 296 Query: 198 KKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 YP N N + + GA G KTG+T + V A + D +AV L A D Sbjct: 297 DPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAER-DGRRLAVTLMAAD 348 >gi|149196127|ref|ZP_01873183.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa HTCC2155] gi|149140974|gb|EDM29371.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa HTCC2155] Length = 337 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVV 159 T++++ L +VKSAND IAE K + K F+ MN ++ LG++ T NAHG+ Sbjct: 160 TISIEELLISAMVKSANDSCQLIAEHFGKGDPKVFIAMMNKQAQELGMTQTRMSNAHGLP 219 Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVG 208 + ++++ D+ L + D+P + + + + K K NTN + Sbjct: 220 FNREKPELDNHSSMSDLLHLVRKSINDYPIILKWTSKREALLPVNSHKATKIGNTN-PLL 278 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 G +G KTGFT +G+ + + + VI G ++NTR+ +L++ Sbjct: 279 AVKGVNGYKTGFTINAGWCQILTTRSNGKFYFLVITGCPNKNTRDVTMRALMN 331 >gi|82543546|ref|YP_407493.1| D-alanyl-D-alanine endopeptidase [Shigella boydii Sb227] gi|81244957|gb|ABB65665.1| penicillin-binding protein 7 [Shigella boydii Sb227] gi|320184846|gb|EFW59636.1| Murein-DD-endopeptidase [Shigella flexneri CDC 796-83] Length = 313 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|323529337|ref|YP_004231489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1001] gi|323386339|gb|ADX58429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1001] Length = 414 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 20/225 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D T V+ E D AS++KLMTA V + + L P+ ++ ++ Sbjct: 177 VVDERTQTVLTEKEADRVMPIASVSKLMTAVVSL----DARHALDAPLRVTVQDQDFDKF 232 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ + L + ++ S N A A++ FV MN ++ LG+ T Sbjct: 233 TGSRLSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALGMRRTS 292 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY------FQIKGLEIKGKKYPNTNW 205 F+N G+ H + +TARD+A L + +P Y G Y N+N Sbjct: 293 FVNGTGLSPH-NVSTARDLARLVA-AASRYPLIRAYSTDRDQMVFPGGPRASLSYHNSNA 350 Query: 206 AVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 V G D KTGF +G +V + + + V+LGA Sbjct: 351 LV---RGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGA 392 >gi|324013985|gb|EGB83204.1| beta-lactamase [Escherichia coli MS 60-1] Length = 309 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|323213518|gb|EFZ98309.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 278 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|217424602|ref|ZP_03456100.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|237508406|ref|ZP_04521121.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gi|217392526|gb|EEC32550.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|235000611|gb|EEP50035.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] Length = 373 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 126 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 182 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 241 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 242 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 298 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 299 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 344 >gi|187924564|ref|YP_001896206.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phytofirmans PsJN] gi|187715758|gb|ACD16982.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phytofirmans PsJN] Length = 395 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+G + + AS+TKLMTA VV + K +T I ++ +Y Sbjct: 146 VIDQNSGESLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQIEVTDEDRDYEKN 201 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ TH Sbjct: 202 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKAKQLGMTDTH 261 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F N G+ + ++ARD+ + +P + E+ GK+ Y +TN Sbjct: 262 FENPTGLTSQ-NVSSARDLVKM-VNAAYQYPIIRRFSTDHSYEVYTGKRSLAYNSTNALV 319 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W +G KTGF +G +V A + +I V+L + + +R A+ L Sbjct: 320 RNPTWDIGL------QKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRF-ADATRL 372 Query: 261 SMGFYNKTDRKKI 273 N D+ +I Sbjct: 373 RTWLDNGGDQARI 385 >gi|116334394|ref|YP_795921.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] gi|116099741|gb|ABJ64890.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367] Length = 392 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 37/242 (15%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-----SFLKEKKAMLTTPITISKNASE 88 LD TG + + AS++KLMT Y+V S K + + T+ + Sbjct: 133 LDYTTGKAVWSKSANTVRPIASVSKLMTLYLVLKKVDGSATKWNQVVDTSSKGLIAMGKS 192 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 FK G T+ ++ S+N+ A+A+ + + + KF++ MN +K+ L Sbjct: 193 SACGGFLFKTGHKYTVKELYDAALLDSSNNAAIALGKWVAGSNAKFIKQMNAQAKSWNLG 252 Query: 149 ATHFMNAHGV-------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 F++A G+ ++ + +A+D+A+++ + D+P+ + + + Sbjct: 253 KASFVSASGLENDDLKAFGYAYGSKNANMVSAKDVALIARHLIKDYPRILTDGAVGSKNV 312 Query: 196 ------------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAV 242 KG+KY ++ L DG+KTG+T +G+ V + + G +I V Sbjct: 313 DGQLCYNYNNLLKGRKYYQSS------LKVDGLKTGYTPLAGYCFVGTGQKSGKHRVITV 366 Query: 243 IL 244 +L Sbjct: 367 VL 368 >gi|312967428|ref|ZP_07781643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75] gi|312287625|gb|EFR15530.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75] Length = 310 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|284029293|ref|YP_003379224.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella flavida DSM 17836] gi|283808586|gb|ADB30425.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella flavida DSM 17836] Length = 380 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 15/221 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT---PITISKNAS 87 Y + D TG V+A P PAS K +TA V+ L +K ++ T + Sbjct: 58 YVVADIGTGAVLAAKAPHAKLRPASTLKTLTALVLLPRLNKKDVVVGTNQDAGIVGSKVG 117 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 YP G ++D + + + S ND A+ + VQ MN + +LG Sbjct: 118 VYP--------GLRYSVDLLFEGMFLASGNDAVNALVQHDEGGTAGTVQRMNKLAADLGA 169 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQYM--HYFQIKGLEIKGKKYPNT 203 TH + G+ G ++A D+A+ + + DF +Y Y E + N Sbjct: 170 LDTHVTDPTGLDADGQVSSAYDLALFARAGLARRDFAKYAATKYTNFPLAESGTYQVANQ 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N + + GA G+KTG+T + + +A + +L+ +L Sbjct: 230 NKLLFNYDGALGVKTGYTTLARNTFIGAARRNGHTLVVTML 270 >gi|187732796|ref|YP_001879537.1| D-alanyl-D-alanine endopeptidase [Shigella boydii CDC 3083-94] gi|187429788|gb|ACD09062.1| penicillin-binding protein 7 [Shigella boydii CDC 3083-94] Length = 313 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMAIFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|227500757|ref|ZP_03930806.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC 35098] gi|227217062|gb|EEI82420.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC 35098] Length = 291 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T+ V A+N D P ASLTK+MTA V + + A+ +A S + Sbjct: 48 TDDKEVYAKN-ADEPLPMASLTKIMTALVSLEHITDLGALAPIDYDAYMDAVNANASMAG 106 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 F+ T T + L I+ S + ++A ++ + FV+ MN+ +K L L+ T + NA Sbjct: 107 FRANETTTYRDLLYGTILASGAEACDSLAINVSGSVDDFVRLMNDKAKELKLTNTSYANA 166 Query: 156 HGVVQHGHYTTARDMAIL 173 G+ +Y +ARD A+L Sbjct: 167 DGMDDEKNYQSARDCAML 184 >gi|74316101|ref|YP_313841.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus denitrificans ATCC 25259] gi|74055596|gb|AAZ96036.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus denitrificans ATCC 25259] Length = 321 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 105/254 (41%), Gaps = 53/254 (20%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA +V + L ITI S + + S GS+ T L L + Sbjct: 78 ASITKLMTAMLVI----DADQPLDERITITSADRDTLKGTGSRLAIGSSYTRGQLLHLAL 133 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ S +FV MN T++ LG+ T ++ G + G+ +TA+D+A Sbjct: 134 IASDNRAAHALGRSYPGGIDRFVSTMNRTARALGMHDTVYVEPTG-LSSGNRSTAQDLAK 192 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG------------------------KKYPNTN---- 204 L DF Y ++ +I+ + G + NTN Sbjct: 193 L-----VDF-AYQNFSEIRNISTTGYYTLGTQRVVVKKKRKKARVLYRPVAFNNTNRLTR 246 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR----NKVSA 257 W +G KTGF +G +V A ++ +I V+L A N R ++ A Sbjct: 247 MDDWVIGLS------KTGFINEAGHCLVMQAQIAERDVIIVLLDATGTNRRAGDAARIKA 300 Query: 258 SLLSMGFYNKTDRK 271 L SMG D + Sbjct: 301 WLESMGTSRSADNR 314 >gi|53721488|ref|YP_110473.1| peptidase [Burkholderia pseudomallei K96243] gi|76819779|ref|YP_337155.1| peptidase [Burkholderia pseudomallei 1710b] gi|52211902|emb|CAH37907.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243] gi|76584252|gb|ABA53726.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b] Length = 362 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 115 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 170 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 171 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 230 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 231 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 287 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 288 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 333 >gi|134283054|ref|ZP_01769756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|226196446|ref|ZP_03792027.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|254198846|ref|ZP_04905264.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|254263948|ref|ZP_04954813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gi|134245702|gb|EBA45794.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|169657018|gb|EDS88412.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei S13] gi|225931322|gb|EEH27328.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|254214950|gb|EET04335.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 373 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 126 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 182 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 241 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 242 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 298 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 299 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 344 >gi|213619028|ref|ZP_03372854.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 272 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 2 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 55 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 56 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 115 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 116 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 174 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 175 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 222 >gi|332097490|gb|EGJ02470.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 3594-74] Length = 292 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 27 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 80 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 81 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 140 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 141 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 194 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 195 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 247 >gi|187921395|ref|YP_001890427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phytofirmans PsJN] gi|187719833|gb|ACD21056.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phytofirmans PsJN] Length = 410 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 20/225 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D T V+AE D AS++KLMTA V + K L P+ ++ ++ Sbjct: 173 VVDERTQTVLAEKQADRVMPIASVSKLMTAVVAL----DAKHALNAPLNVTVQDQDFDKF 228 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GST++ + L + ++ S N A A++ FV MN ++ LG+ T Sbjct: 229 TGSRLSVGSTLSRHDMLHIALMSSENRAAAALSRDYTGGRPGFVAAMNAKARLLGMRHTS 288 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY------FQIKGLEIKGKKYPNTNW 205 F+N G+ + +TARD+++L + +P Y + G Y N+N Sbjct: 289 FVNGTGLSAQ-NVSTARDLSLLVA-AASRYPLIRAYSTDRDQVVLPGGGRASLSYHNSNA 346 Query: 206 AVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 V G D KTGF +G +V + + V+LGA Sbjct: 347 LV---RGGDRSIVLQKTGFINEAGHCVVVRMKVHGRPVDIVVLGA 388 >gi|191170132|ref|ZP_03031686.1| penicillin-binding protein 7 [Escherichia coli F11] gi|190909648|gb|EDV69233.1| penicillin-binding protein 7 [Escherichia coli F11] Length = 297 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 86 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 146 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 199 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 200 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|62180754|ref|YP_217171.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128387|gb|AAX66090.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and penicillin-binding protein 8 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715229|gb|EFZ06800.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 315 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLLYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|167905525|ref|ZP_02492730.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC 13177] Length = 365 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 118 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 173 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 174 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 233 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 234 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 290 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 291 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 336 >gi|262379926|ref|ZP_06073081.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens SH164] gi|262298120|gb|EEY86034.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens SH164] Length = 352 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 103/241 (42%), Gaps = 24/241 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITI--SKNASEY 89 ++D TG V+ + AS+TKLMTA V + L + + PI K AS Sbjct: 115 VMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDARLNMSEEITLQPIDFIGPKKAS-- 172 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST + G M L ++KS N A A+A + + FV MN ++ LG+ + Sbjct: 173 ----STLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELGMHS 228 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPN 202 F + G+ + +ARD+ IL + QY Q L + K N Sbjct: 229 AKFYESTGLDAR-NVASARDLGIL----VSAASQYGLIRQFSTTPTYDFNLGYRVLKSNN 283 Query: 203 TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN V G + + KTGF +G +V A + I V+LGA D +RN + L Sbjct: 284 TNALVRNGGW-NINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNNDATRLF 342 Query: 261 S 261 S Sbjct: 343 S 343 >gi|156933292|ref|YP_001437208.1| D-alanyl-D-alanine endopeptidase [Cronobacter sakazakii ATCC BAA-894] gi|156531546|gb|ABU76372.1| hypothetical protein ESA_01104 [Cronobacter sakazakii ATCC BAA-894] Length = 310 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ ++PD AS+TK+MTA VV MLT I+ + E Sbjct: 49 IVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDASLPLDEMLTVDIS---HTPEMKGI 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG+ THF Sbjct: 106 YSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMRNTHF 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + + N + + F Sbjct: 166 VEPTGLSIH-NVSTARDLTKLLIATK----QYPLIGQLSTTREEMATFSNPTYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G ++ + ++ + V++ A + T Sbjct: 220 TNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYT 269 >gi|289824265|ref|ZP_06543860.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 86 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 146 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 204 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 205 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|56412918|ref|YP_149993.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56127175|gb|AAV76681.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 315 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|254185373|ref|ZP_04891961.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] gi|254187257|ref|ZP_04893771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] gi|157934939|gb|EDO90609.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pasteur 52237] gi|184209608|gb|EDU06651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1655] Length = 350 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 158 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 159 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 218 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 219 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 275 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 276 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 321 >gi|289807457|ref|ZP_06538086.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 92 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A D+A+LS Sbjct: 1 GNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSR 60 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 I P++ H + K L G N N Sbjct: 61 AIIHGEPEFYHMYSEKSLTWNGITQQNRN 89 >gi|317473054|ref|ZP_07932354.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|316899483|gb|EFV21497.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 20/237 (8%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L + +G ++ + PASLTK+MT + + + + I ++ ++ Sbjct: 56 VLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMNQDIFQSLAQSHA 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F G + + + ++ S + + +A L +E+KF MN ++ +G+ T+ Sbjct: 116 SVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGMKHTN 175 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPN-------- 202 F+N+ G+ H +TA D+ IL R P++ F+ + +K+P Sbjct: 176 FVNSTGLHDPKHVSTAEDLEIL-LRYALKNPRFRKVFETMQYRTEPTQKHPEGLLLQSTL 234 Query: 203 TNWAV------GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTR 252 T++ G+FLG KTG+T +G + + I+G + ++ D TR Sbjct: 235 TDYKDQLKPTNGSFLGG---KTGYTKEAGLCLASWVNIRGKRYILVTAGARGDHQTR 288 >gi|167751641|ref|ZP_02423768.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702] gi|167655449|gb|EDR99578.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702] Length = 390 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 25/292 (8%) Query: 33 LLDTNTGHVI-AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ +TG V+ ++N +H AS TK+MTA + + K P I + Sbjct: 50 LIEADTGTVLFSKNEKEH-RQIASTTKIMTALLTLEAGEPDKEFEVDPTAI-----KVEG 103 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++ ++G +T +++ S ND A A A ++ ++ F MN ++ +G++ T+ Sbjct: 104 TSMGLREGDIVTRRALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTN 163 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIK---GLEIKGKKYPNTNWA 206 F+ G+ G Y+ A D+A+L+ DF + + K G + N+N Sbjct: 164 FVTPSGLDADGQYSCAYDLALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRILVNSNKL 223 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS--ASLLSMGF 264 + ++ G G+KTGFT ++ +V+ A + LIAV L N N S A +L GF Sbjct: 224 LTSYDGCIGVKTGFTDSARRTLVSCAERDGVRLIAVTL-----NAPNDWSDHAKMLDYGF 278 Query: 265 YN------KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 K D ++ + ++ + E + +C QK+ I M Sbjct: 279 EKVTLCEMKYDSSALSLSVVGSEKETVGVECGTVKLPLCNEQKDKITAEIYM 330 >gi|167827077|ref|ZP_02458548.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9] gi|167897149|ref|ZP_02484551.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894] Length = 349 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 158 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 217 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 275 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 320 >gi|255320984|ref|ZP_05362157.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] gi|255301948|gb|EET81192.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] Length = 330 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 103/241 (42%), Gaps = 24/241 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITI--SKNASEY 89 ++D TG V+ + AS+TKLMTA V + L + + PI K AS Sbjct: 93 VMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDARLNMSEEITLQPIDFIGPKKAS-- 150 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST + G M L ++KS N A A+A + + FV MN ++ LG+ + Sbjct: 151 ----STLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELGMHS 206 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPN 202 F + G+ + +ARD+ IL + QY Q L + K N Sbjct: 207 AKFYESTGLDAR-NVASARDLGIL----VSAASQYGLIRQFSTTPTYDFNLGYRVLKSNN 261 Query: 203 TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN V G + + KTGF +G +V A + I V+LGA D +RN + L Sbjct: 262 TNALVRNGGW-NINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNNDATRLF 320 Query: 261 S 261 S Sbjct: 321 S 321 >gi|237747720|ref|ZP_04578200.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13] gi|229379082|gb|EEO29173.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13] Length = 397 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMTA VV +++ +L IT + + S K G+ M+ N L L ++ Sbjct: 169 ASVTKLMTALVVVESMQDMNEILE--IT-QDDVDMLKHTGSRLKVGTRMSRGNLLHLALM 225 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ + K FV MN ++ LG+S ++++++ G + G+ +ARD+A L Sbjct: 226 SSENRAAAALGRNYPGGLKGFVSAMNIKAQVLGMSDSNYVDSSG-LSSGNVASARDLAKL 284 Query: 174 -----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-------NWAVGTFLGADGMKTGFT 221 + I + HY GL +Y +T NW + KTG+ Sbjct: 285 VMAASQYPILRKYSTDTHYSVDDGLH--QLQYGSTNALVHNPNWQIQL------QKTGYI 336 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V AI + ++ V L + + +R Sbjct: 337 SEAGQCLVMKAIIDGRPIVMVFLDSKGKGSR 367 >gi|161613143|ref|YP_001587108.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362507|gb|ABX66275.1| hypothetical protein SPAB_00851 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 313 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|16765498|ref|NP_461113.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168242251|ref|ZP_02667183.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168466155|ref|ZP_02700025.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445434|ref|YP_002041439.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197251040|ref|YP_002147139.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|207857603|ref|YP_002244254.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161142|ref|ZP_03346852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428230|ref|ZP_03360980.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224583331|ref|YP_002637129.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912611|ref|ZP_04656448.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420704|gb|AAL21072.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194404097|gb|ACF64319.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195631155|gb|EDX49715.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214743|gb|ACH52140.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205338411|gb|EDZ25175.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206709406|emb|CAR33747.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467858|gb|ACN45688.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and penicillin-binding protein 8 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|267994231|gb|ACY89116.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312913159|dbj|BAJ37133.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224821|gb|EFX49884.1| Murein-DD-endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615196|gb|EFY12118.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617787|gb|EFY14683.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624619|gb|EFY21450.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626930|gb|EFY23726.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634116|gb|EFY30852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635693|gb|EFY32403.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640172|gb|EFY36836.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646405|gb|EFY42917.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649373|gb|EFY45809.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656493|gb|EFY52782.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661469|gb|EFY57693.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665643|gb|EFY61827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667167|gb|EFY63334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671173|gb|EFY67301.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675187|gb|EFY71264.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680795|gb|EFY76830.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686970|gb|EFY82947.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130495|gb|ADX17925.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192734|gb|EFZ77961.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198834|gb|EFZ83933.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205156|gb|EFZ90134.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208199|gb|EFZ93143.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323215776|gb|EGA00519.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222875|gb|EGA07231.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223859|gb|EGA08162.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231222|gb|EGA15337.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233656|gb|EGA17748.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237726|gb|EGA21786.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245709|gb|EGA29703.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248926|gb|EGA32850.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253002|gb|EGA36835.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258678|gb|EGA42340.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259510|gb|EGA43145.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268293|gb|EGA51768.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271918|gb|EGA55334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624002|gb|EGE30347.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628395|gb|EGE34738.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989102|gb|AEF08085.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 315 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|333009574|gb|EGK29026.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri K-272] gi|333020501|gb|EGK39764.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri K-227] Length = 147 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 10/103 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A + Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99 Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAE 125 N + S M L ++ +I++S ND +A A+ Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIAPAD 142 >gi|55821084|ref|YP_139526.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated [Streptococcus thermophilus LMG 18311] gi|55737069|gb|AAV60711.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated [Streptococcus thermophilus LMG 18311] Length = 313 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 31/164 (18%) Query: 113 VKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHG---VVQHGHY---- 164 V S+N V +A L + K++ MN SK L ++ T + NA G V G+Y Sbjct: 4 VLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQR 63 Query: 165 --------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKY-----------PNTN 204 TTARD+ I+++ +P + Y + +K G Y P N Sbjct: 64 YDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGAN 123 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + G DG KTG + FN + + G+Q +IA+I+G+ D Sbjct: 124 YGLK---GVDGSKTGSSPEVAFNYIDTIKHGNQRMIAIIMGSGD 164 >gi|167745400|ref|ZP_02417527.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662] gi|167655121|gb|EDR99250.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662] Length = 302 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 20/237 (8%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L + +G ++ + PASLTK+MT + + + + I ++ ++ Sbjct: 56 VLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMNQDIFQSLAQSHA 115 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + F G + + + ++ S + + +A L +E+KF MN ++ +G+ T+ Sbjct: 116 SVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGMKHTN 175 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPN-------- 202 F+N+ G+ H +TA D+ IL R P++ F+ + +K+P Sbjct: 176 FVNSTGLHDPKHVSTAEDLEIL-LRYALKNPRFRKVFETMQYRTEPTQKHPEGLLLQSTL 234 Query: 203 TNWAV------GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTR 252 T++ G+FLG KTG+T +G + + I+G + ++ D TR Sbjct: 235 TDYKDQLKPTNGSFLGG---KTGYTKEAGLCLASWVNIRGKRYILVTAGARGDHQTR 288 >gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC [Mycobacterium marinum M] gi|183174540|gb|ACC39650.1| penicillin-binding protein DacC [Mycobacterium marinum M] Length = 415 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 36/248 (14%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D ++G +IA P PAS+ K++ A V L + KA+ P T +A+E + Sbjct: 111 DLDSGAIIAARDPHARHRPASIIKVLVAMVSIKELNQNKAV---PGTNDDSAAEG--TKV 165 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G T++ L L++ S ND A A+A L + + +N + LG T Sbjct: 166 GVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQTAL-EKINMLAAKLGGRDTRVAT 224 Query: 155 AHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKGKKYP 201 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 225 PSGLDGPGMSTSAYDIGLFYRYAWQNPIFADIVATRTFDFPGHGEH---PGYELE----- 276 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----S 256 N N + + GA G KTG+T +G V +A + L AV+L TR + + Sbjct: 277 NDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLL----HGTRQPIAPWEQA 332 Query: 257 ASLLSMGF 264 A LL GF Sbjct: 333 AHLLDYGF 340 >gi|167921747|ref|ZP_02508838.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215] Length = 350 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 158 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 159 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 218 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 219 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 275 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 276 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 321 >gi|126456044|ref|YP_001074647.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242313626|ref|ZP_04812643.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|126229812|gb|ABN93225.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242136865|gb|EES23268.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] Length = 350 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 158 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 159 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 218 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 219 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 275 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 276 LRDSAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 321 >gi|167741512|ref|ZP_02414286.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14] gi|167818703|ref|ZP_02450383.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91] Length = 349 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 158 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 217 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 275 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 320 >gi|126445342|ref|YP_001061703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 668] gi|126224833|gb|ABN88338.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] Length = 350 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 158 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 159 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 218 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 219 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 275 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 276 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 321 >gi|167551122|ref|ZP_02344877.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324035|gb|EDZ11874.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 315 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV +L I+ E Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLNEILKVDIS---QTPEMKGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG++ T F Sbjct: 102 YSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYDAFIKAMNAKAKALGMTHTRF 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKGKKY 200 + G+ H + +TARD+ L K D + H Sbjct: 162 VEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLV 220 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 221 YRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|323968053|gb|EGB63463.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] Length = 313 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|261867997|ref|YP_003255919.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413329|gb|ACX82700.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 292 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 14/240 (5%) Query: 12 MLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 ML +FP L + + Y + D V+ + P+ AS+TKLMTA V FL+ Sbjct: 1 MLKKVFPSLFLLPAVAMAQSYVVYDFTHNKVLESSAPNTVRPIASVTKLMTANV---FLE 57 Query: 71 EKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K T +I+ + +Y T K + ++ LK+++V S N A A++ S Sbjct: 58 HNKNPRCTA-SITDDDYDYIKGTRTKLPKYTPISCRELLKMMLVHSDNYAAHALSRSAGM 116 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 T +F+ MN ++ LG+ +T F ++ G+ H + ++A D+ L+ + P+ + Sbjct: 117 TRLQFIGKMNEKARQLGMKSTCFSDSSGLSTH-NVSSAMDLVKLT-KYSMSKPEIKAFSN 174 Query: 190 IKGLEIKGKKYP----NTNWAV-GTFLGADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 + ++ K NTN V A KTG+ SG+N+V + + +++ I VI Sbjct: 175 LSSTYVQAGKRSVFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNRATIGVI 234 >gi|254296746|ref|ZP_04964200.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] gi|157806643|gb|EDO83813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 406e] Length = 350 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 158 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 159 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 218 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 219 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 275 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 276 LRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 321 >gi|166240883|ref|ZP_02240755.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 146 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ NTG V+ EN D PAS++K+MT Y++ +K+ K + +SK A+ S Sbjct: 50 LMEANTGQVLYENNADTLLPPASMSKMMTEYLIMEAIKDGKIKWEDKVPVSKQAASAIGS 109 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +G +++ + + + S+ND +VA+AE L Sbjct: 110 GQLLAEGEQLSVKDMFYAISIYSSNDASVAMAEYL 144 >gi|62184714|ref|YP_219499.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus S26/3] gi|62147781|emb|CAH63526.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus S26/3] Length = 433 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 37/245 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV----------FSFLKEKKAMLTTPITI 82 ++ T TG V+ D PAS+TK+ TA + F +K TP Sbjct: 38 VVHTETGKVLYAKDLDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 97 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKF 134 ++ PP + G T+ L N ++ L++ SAND A A+A + + +F Sbjct: 98 KQSGYRSPP-HWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVAEF 156 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI---- 190 ++ +N + LG THF N HG+ HYTTA D+ I R P + + Sbjct: 157 MKQLNQFLRELGCDHTHFNNPHGLHHPDHYTTAGDL-IRIMREGLKEPLFRQVIRTTNYT 215 Query: 191 ---------KGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + L + K P + + LG KTG T +G N+V +A + +S+I Sbjct: 216 MAPTNLSEERILHLTNKLILPGSTYYYPPALGG---KTGTTKDAGRNLVFAAKKHGRSII 272 Query: 241 AVILG 245 + G Sbjct: 273 TIAAG 277 >gi|294781926|ref|ZP_06747258.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 1_1_41FAA] gi|294481737|gb|EFG29506.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G+VI D + AS+TK+M+ V F + L + ISK +Y S K+ Sbjct: 190 GNVIFSKNADTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKYGGSGIALKE 249 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGL---------S 148 G L++ +K V SAN+ A+AE + + FV MN K LGL + Sbjct: 250 GQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNKKLKQLGLQNDIKYHTPA 309 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 N + G T R + +++ + +Y Y +I G IK K N ++ Sbjct: 310 GLPTRNTKMPMDEG---TPRGI----YKLSIEALKYDKYIEIAG--IKNTKIYNGKISIR 360 Query: 209 T---FLGAD---GMKTGFTCASGFNI-VASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 +G D G+KTGF + +NI VA +G LI V++G TR+ + ++++ Sbjct: 361 NRNHLIGEDGVYGIKTGFHKEAKYNITVAVKFEG-IDLIIVVMGGETYKTRDDLVRTIIA 419 >gi|161502683|ref|YP_001569795.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864030|gb|ABX20653.1| hypothetical protein SARI_00730 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 315 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 32/236 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTHKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------N 202 T F+ G+ H + +TARD+ L K +P + I ++ +P N Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATK-QYP-LIGQLSITREDMATFSHPAYTLPFRN 215 Query: 203 T-------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 T NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 TNHLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|317051485|ref|YP_004112601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum indicum S5] gi|316946569|gb|ADU66045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum indicum S5] Length = 341 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 113/251 (45%), Gaps = 19/251 (7%) Query: 24 ETNKLPYYTLLDTNTGHVI-AENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 E ++L ++D N ++ A+N H P ASLTK+ + +++ + Sbjct: 90 EASQLGAIIVVDANRQEIVYAKNL--HEVMPIASLTKVFLMEELLDRIQQGALTFDKELR 147 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140 S +S S ++ T++ K ++ SAND A + E + + Q + Sbjct: 148 ASTRSSLIGGSRVYLREHENTTIEQLAKATMIHSANDAAYLLGEVIGGGDANHAAQLLTA 207 Query: 141 TSKNLGLSATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 ++ LGL T N +G+ G + +T ++A ++++ P+ F+I E+ Sbjct: 208 KAQTLGLKNTRLYNVNGLPNRGGPDNISTPYELAQFTFKLMARNPEI---FEIASTEVDY 264 Query: 198 KKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + P N N + G+KTG+T ++GF ++ ++ + +++LI VIL A Sbjct: 265 FRRPGGQDFLLVNRNRPLVRLDYVTGLKTGYTNSAGFCVITTSNKNNRNLITVILNAPSS 324 Query: 250 NTRNKVSASLL 260 R++ + L+ Sbjct: 325 QIRDRAAKRLI 335 >gi|327253261|gb|EGE64915.1| D-alanyl-D-alanine endopeptidase [Escherichia coli STEC_7v] Length = 310 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 99 KGVYSRVRLNSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|325266278|ref|ZP_08132957.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC 33394] gi|324982240|gb|EGC17873.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC 33394] Length = 317 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 25/243 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 +++ NTG ++ + + + AS++KLM A VV + + + ITI++ Sbjct: 81 IMNANTGQILFQKNMNSVRSIASISKLMAAMVVL----DARLDMGQTITITEAEIDRLKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+A + FVQ MN +++LG+ T Sbjct: 137 TGSRLSIGTELTRTQLLHLGLMSSENRAIHALARTYPGGMSAFVQAMNAKAQSLGMRHTR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTN-- 204 F G+ + +TA D+ +++ + +PQ + K ++ + ++Y N+N Sbjct: 197 FYEPTGLDPR-NVSTASDLLLMA-QAADRYPQIRQFSTAKSGQVYTSAGRVQQYQNSNAL 254 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 W + KTG+ +G ++V G +I V+LG+ TR + +L Sbjct: 255 VREGRWNISV------QKTGYIREAGRSMVLKTQMGRDPIIMVVLGSSTSTTRVNDARTL 308 Query: 260 LSM 262 SM Sbjct: 309 GSM 311 >gi|167848574|ref|ZP_02474082.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210] Length = 349 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +TG + + AS+TKLMTA VV + A L I ++ + + Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDKF 157 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ T+ Sbjct: 158 TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTY 217 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204 F N G+ +H + ++ARD+A + + + + + Y GL + Y +TN Sbjct: 218 FENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHSTNVL 274 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 275 LRDSAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 320 >gi|332530569|ref|ZP_08406506.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624] gi|332039975|gb|EGI76364.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624] Length = 346 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +T V+ + ASLTKLMT ++ E + L PITI+++ + Sbjct: 97 VIDQDTQEVLFSKNEEAVLPIASLTKLMTTLLI----SEAELPLDEPITITQDDVDTEKY 152 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S S + G+ +T L L ++ S N A A+ + FV MN ++ LG+ T Sbjct: 153 SVSRLRVGTVLTRGELLHLALMASENRAANALGRTYPGGLSIFVTMMNAKAQLLGMQDTR 212 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN--- 204 ++ G+ + ++ARD+A+L D P + + ++ G++ + NTN Sbjct: 213 YVEPTGLSSR-NQSSARDLALLVDAASAD-PMLREFSTTRAYQVAVGQRKMVFANTNRLV 270 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L ++ + +R Sbjct: 271 LNQRWDIGL------QKTGYISEAGQCLVMQATVAGRKLIMVFLDSVGKLSR 316 >gi|194449016|ref|YP_002046221.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469108|ref|ZP_03075092.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736053|ref|YP_002115257.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262067|ref|ZP_03162141.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197300824|ref|ZP_02661392.2| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197361849|ref|YP_002141485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244375|ref|YP_002216252.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387930|ref|ZP_03214542.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929084|ref|ZP_03220227.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353306|ref|YP_002227107.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205357645|ref|ZP_02572191.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358255|ref|ZP_02654578.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205360216|ref|ZP_02681467.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|213584224|ref|ZP_03366050.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647182|ref|ZP_03377235.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852329|ref|ZP_03381861.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|194407320|gb|ACF67539.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455472|gb|EDX44311.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711555|gb|ACF90776.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093325|emb|CAR58773.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240322|gb|EDY22942.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290536|gb|EDY29891.1| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938891|gb|ACH76224.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605028|gb|EDZ03573.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321628|gb|EDZ06827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273087|emb|CAR38040.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330584|gb|EDZ17348.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335922|gb|EDZ22686.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350646|gb|EDZ37277.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247382|emb|CBG25207.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158730|emb|CBW18242.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 302 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV +L I+ E Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDIS---QTPEMKGV 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG++ T F Sbjct: 89 YSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKGKKY 200 + G+ H + +TARD+ L K D + H Sbjct: 149 VEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLV 207 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 208 YRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|226942291|ref|YP_002797364.1| penicillin-binding protein 7 [Azotobacter vinelandii DJ] gi|226717218|gb|ACO76389.1| penicillin-binding protein 7 precursor [Azotobacter vinelandii DJ] Length = 318 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 26/246 (10%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P L +A + L ++D NTG + N+PD AS++KLMTA V + + Sbjct: 36 PPLELASASAL----VIDLNTGRELFANHPDVIVPIASISKLMTAMVTLDARQPLDEAI- 90 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 P+ I + E S + S ++ L+L ++ S N A ++A + +FV Sbjct: 91 -PVRI-HDTRELRGVYSRVRVNSLISRREMLRLALMSSENRAAASLAHNYPGGHARFVAA 148 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--------RIKTDFPQYMHYFQ 189 MN ++ L + +T F+ G+ + + +TARD+A L R + P + YFQ Sbjct: 149 MNAKARALSMHSTRFVEPTGLSER-NVSTARDLAKLLRAARQYPLIRELSTTPSHSAYFQ 207 Query: 190 ----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ N +W + + KTGF +G + A+ ++ + V+L Sbjct: 208 QPRYVQNFNNTNPLVRNPDWRI------EVTKTGFIDEAGHCLALLAVIQNRPVAMVLLN 261 Query: 246 ALDRNT 251 L +++ Sbjct: 262 TLGKHS 267 >gi|170025107|ref|YP_001721612.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis YPIII] gi|169751641|gb|ACA69159.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis YPIII] Length = 323 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +L+ I +K E Sbjct: 61 VVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDAKLPLDEILSVDIDQTK---ELKGV 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG+S+TH+ Sbjct: 118 FSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMSSTHY 177 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+A L K QY Q+ K + N+ + F Sbjct: 178 VEPTG-LSINNVSTARDLAKLLMATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 231 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + G + + V+L A + T Sbjct: 232 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYT 281 >gi|157144931|ref|YP_001452250.1| D-alanyl-D-alanine endopeptidase [Citrobacter koseri ATCC BAA-895] gi|157082136|gb|ABV11814.1| hypothetical protein CKO_00660 [Citrobacter koseri ATCC BAA-895] Length = 311 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFANPAYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYT 265 >gi|299144553|ref|ZP_07037632.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517641|gb|EFI41381.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 290 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 15/234 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + +I E + ASLTKLMT V + + + + KN S Sbjct: 43 VMDADKNKIIFEKNANEKLKIASLTKLMTVLVAIEKNLDWEEISPVDVESYKNMVASNAS 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F + + + L ++ S + A+++A + + FV MN +K LGL T+F Sbjct: 103 MVGFYGRERVKVKDLLYGTMLASGGEAAMSLAIKSSGSLENFVIDMNEKAKELGLKETNF 162 Query: 153 MNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIK------------GLEIKGKK 199 N G+ + +Y+TARDMA +L+ IK + ++ F K G+ I+ Sbjct: 163 SNPVGMDEENNYSTARDMALLLNEAIKNE--EFKKIFTAKNYTTTETLDHPNGINIESTV 220 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + T G K+G T +G + +G+++ I V++GA RN Sbjct: 221 LKEISDEDKTDFKILGGKSGTTKEAGLCWATLSKKGEKNYIIVVIGAPLDELRN 274 >gi|115352221|ref|YP_774060.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria AMMD] gi|172061088|ref|YP_001808740.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MC40-6] gi|115282209|gb|ABI87726.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia ambifaria AMMD] gi|171993605|gb|ACB64524.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MC40-6] Length = 384 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 135 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DAKSPMTDQLEVTDEDRDYEK 189 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K+LG++ T Sbjct: 190 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMNDT 249 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + ++ GK+ Y +TN Sbjct: 250 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYDVYTGKRNLVYNSTNAL 307 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 308 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 355 >gi|227530036|ref|ZP_03960085.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis ATCC 49540] gi|227350068|gb|EEJ40359.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis ATCC 49540] Length = 411 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 40/283 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG +I + + AS++KL+T V+ + + T + ISK +E Sbjct: 38 MIDADTGQIIYQQNSEEKLPIASISKLLTVSVIEDEINHHQLSWNTKVKISKKIAEVSND 97 Query: 93 NS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ + G + T+ ++KSA+ A+A+A + T K+F + M ++ +G++ Sbjct: 98 SNYSAIGLQAGQSYTVRELFNATLIKSADGAALALATADGSTIKQFNEKMQKKARQIGIT 157 Query: 149 ATHFMNA--------HGVVQHG------HYTTARDMAILSWRIKTDFPQYMHY------- 187 +N G+ Q G + TARD+A++S + +P + Sbjct: 158 DATIVNPVGLKNGDLKGLKQAGISNNAENSMTARDVALMSQYLVKHYPSVLKVTSQPKAQ 217 Query: 188 FQIKGLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 F I + K + N + G + + DG+KTG + A+G ++ LI V+ Sbjct: 218 FTIAKGKTKEVENLNKMLSGGKYTVDGVQIDGLKTGTSEAAGACFASTGSYQGHRLITVV 277 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 L A N ++K + + Y Y I++ +QQ L+ Sbjct: 278 LHA---NGKDKDARFTQTQKLY--------QYFIQNAHQQVLT 309 >gi|193222252|emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) [Herminiimonas arsenicoxydans] Length = 308 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +T V+ E + AS+TKLMT VV ++ ML +++ S Sbjct: 61 VIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLEV---TAEDIDREKNS 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + GS ++ N L + ++ S N A A+ + FV MN +K+LG+ TH+ Sbjct: 118 SSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMRGTHY 177 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 +++ G+ + + +ARD+A L Sbjct: 178 VDSTGLSSN-NVASARDLAKL 197 >gi|289809759|ref|ZP_06540388.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 278 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 85 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 86 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 145 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 146 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 204 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 205 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 252 >gi|256556949|gb|ACU83571.1| D-alanyl-D-alanine carboxypeptidase [uncultured bacterium HF130_AEPn_2] Length = 307 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D T VI + PD AS+TKLMT VV L K+ M IS N S+ P Sbjct: 43 LVDLQTNKVIYASNPDVVVPIASVTKLMTGMVV---LDAKQNM---DEYISINISDTPEM 96 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + S M L + ++ S N A ++A F+ MN +K LG+++ Sbjct: 97 KGVFSRVKLNSEMPRKEMLLITLMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMNS 156 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++ G+ H + +TARD++ L + +Y Q+ + K + N+ +G Sbjct: 157 TRYVEPTGLSIH-NVSTARDLSKLVQAAR----KYPMLTQLSTTKEKTVSFRKPNYTLG- 210 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V G++ + VIL A + T Sbjct: 211 FSNTDHLVNRANWDIKLTKTGFTNQAGHCLVLVTSMGNRPVSLVILDAFGKFT 263 >gi|224826640|ref|ZP_03699741.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella nitroferrum 2002] gi|224601241|gb|EEG07423.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella nitroferrum 2002] Length = 290 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 25/227 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 +L+ G + + D P AS+TKLMTA V + + PITI++N Sbjct: 49 VLNGANGEALYQKNTDLPLPFASITKLMTAMVTL----DAGLSMDEPITITENEIDRLKN 104 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++S G+T+ L L ++ S N A A+A + + FV MN ++ LG++ T Sbjct: 105 TSSRLSVGTTLPRREMLLLALMSSENRAAAALARTYPGGTQAFVAQMNRKARALGMNNTV 164 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK----YPNTN-- 204 F + G ++ + TA D+A + R +P + + E+ G + Y N+N Sbjct: 165 FYDPTG-LEVRNTATAMDLARMV-RAANGYPLIRTFTTTQEHEVMSGSRRMLHYKNSNAL 222 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 W + KTG+ +G +V G Q LI V+L A Sbjct: 223 VREGDWDISL------QKTGYIQEAGRCMVLQTTVGSQPLIIVLLAA 263 >gi|311739947|ref|ZP_07713781.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305020|gb|EFQ81089.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium pseudogenitalium ATCC 33035] Length = 401 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G +IA P+ + PAS+ K + A VV L L + + + +++ Sbjct: 95 WMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDELD-----LHQKVEVGEESAQID 149 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T T++ L+ L++ S ND A A+A+ L E + +N+ + +G ++T Sbjct: 150 GSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEATL-RKVNDKAAEIGTNST 208 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKGKKYPNTN 204 + + G+ G T+A D++ + +R P + + + ++ G + N N Sbjct: 209 YAASYSGLDAPGMSTSAEDISRI-YRAAFHNPTFARIVDTESVDFPGWGDLDGYQLGNDN 267 Query: 205 WAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G FL DG+ KTGFT + V GALDR+ R ++ A LL Sbjct: 268 ---GLFLNDPDGIGGKTGFTDDAHHTFV---------------GALDRHGR-RLQAVLL 307 >gi|186476224|ref|YP_001857694.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phymatum STM815] gi|184192683|gb|ACC70648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia phymatum STM815] Length = 387 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + KA +T I ++ +Y + S GS ++ ++ L + + Sbjct: 160 ASITKLMTAMVVL----DSKAAMTEQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIAL 215 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K LG++ THF N G+ + ++ARD+ Sbjct: 216 MASENRAAAALSRYFPGGRPAFMAAMNAKAKALGMTDTHFENPTGLTSQ-NVSSARDLVK 274 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + E+ GK+ Y +TN W +G KTGF Sbjct: 275 M-VNAAYQYPLIRKFSTDRSYEVYTGKRSIAYNSTNALVRNPSWEIGL------QKTGFI 327 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A D+ +I V+L + + +R Sbjct: 328 NEAGECLVMQATIHDRPMIMVLLDSSGKYSR 358 >gi|153948552|ref|YP_001401770.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP 31758] gi|152960047|gb|ABS47508.1| penicillin-binding protein 7 [Yersinia pseudotuberculosis IP 31758] Length = 311 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +L+ I +K E Sbjct: 49 VVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDAKLPLDEILSVDIDQTK---ELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG+S+TH+ Sbjct: 106 FSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMSSTHY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+A L K QY Q+ K + N+ + F Sbjct: 166 VEPTG-LSINNVSTARDLAKLLMATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + G + + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYT 269 >gi|254247777|ref|ZP_04941098.1| Peptidase S11 [Burkholderia cenocepacia PC184] gi|124872553|gb|EAY64269.1| Peptidase S11 [Burkholderia cenocepacia PC184] Length = 388 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 139 VVDQNSGEPLFDKN-SHAVVPIASISKLMTAMVVL----DAKSPMTDQLEVTDEDRDYEK 193 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 194 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDT 253 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 254 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYEVYTGKRNLVYNSTNAL 311 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 312 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 359 >gi|107028687|ref|YP_625782.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia AU 1054] gi|116690154|ref|YP_835777.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia HI2424] gi|170733486|ref|YP_001765433.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia MC0-3] gi|105897851|gb|ABF80809.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia AU 1054] gi|116648243|gb|ABK08884.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia HI2424] gi|169816728|gb|ACA91311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia MC0-3] Length = 388 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 139 VVDQNSGEPLFDKN-SHAVVPIASISKLMTAMVVL----DAKSPMTDQLEVTDEDRDYEK 193 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 194 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDT 253 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 254 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYEVYTGKRNLVYNSTNAL 311 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 312 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 359 >gi|170703460|ref|ZP_02894228.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria IOP40-10] gi|170131628|gb|EDT00188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria IOP40-10] Length = 370 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 27/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 121 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DAKSPMTDQLEVTDEDRDYEK 175 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K+LG++ T Sbjct: 176 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMNDT 235 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + ++ GK+ Y +TN Sbjct: 236 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYDVYTGKRNLVYNSTNAL 293 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 294 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSR 341 >gi|257455273|ref|ZP_05620508.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter aerosaccus SK60] gi|257447235|gb|EEV22243.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter aerosaccus SK60] Length = 364 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 28/237 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG+ I E D AS++KLMTA VV E A + +TIS + P Sbjct: 122 VVDALTGNTIYEKNADIARPIASISKLMTAVVV----AESGANMGETLTISSLDFKTPKQ 177 Query: 93 NST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + K G + L ++++KS N A A+A + F+ MN ++ LG++ T Sbjct: 178 SGSDRLKVGDQLNRAEMLLMMMMKSENPAAKALARTDPMGYDNFISRMNQKARELGMTQT 237 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-- 208 + + G+ + + RD+AIL+ Y H + +++ N G Sbjct: 238 RYYDPSGLDSR-NVASPRDLAILARY------AYKHNLISQFSTTPSRQFGVNNINSGYR 290 Query: 209 -------TFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 ++ DG+ KTG+ +G ++ G++ I V+LGA D TR Sbjct: 291 TVAARSTNYMVRDGLYNIGLSKTGYIREAGNCVLFETNVGNRPAIVVLLGANDSKTR 347 >gi|311897918|dbj|BAJ30326.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054] Length = 740 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109 AS+TK+M AY++ KK +T+ K A++ S T K+G ++ AL+ Sbjct: 419 ASVTKVMNAYLILQAHPLKKGESGPTLTVDKQAAQESGNADESTVTLKEGQQLSEYEALE 478 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +L++ SAN++A +A +E++FV+ MN T+ LG+ T + + G + +TA+D Sbjct: 479 MLMLPSANNVARLLARWDSGSEEEFVKKMNATAAQLGMPNTTYADPAG-YDNNTKSTAKD 537 Query: 170 MAILSWRIKTDFPQYMHYFQI---KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 L+ ++ Q + QI + G++ NTN +G G G+KTG + + Sbjct: 538 QLKLAEKVM----QLEIFKQIVAEPDTKFNGQRVFNTNALLGKN-GNIGVKTGSSTPAQS 592 Query: 227 NIVASAIQ---GDQSLI-AVILG 245 ++ +A++ G Q +I V LG Sbjct: 593 CLMWAAVKEIGGVQRMILGVTLG 615 >gi|227432858|ref|ZP_03914813.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351385|gb|EEJ41656.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 251 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEY 89 ++ +T +++E P AS++KLMT Y+V KK L T + S N E Sbjct: 1 MNADTDKILSEKNAHKPLAIASISKLMTGYLVL-----KKLPLGTQVQPSSNTMKIGEES 55 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ++ + + D L+ + SAND A+A+ + + ++ KFV+ M TS++ GL++ Sbjct: 56 NLASVNLVSNQSYSADELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLAS 115 Query: 150 THFMNAHGV 158 + NA G+ Sbjct: 116 AQWYNAAGI 124 >gi|320086606|emb|CBY96377.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 315 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKG 197 T F+ G+ H + +TARD+ L K D + H Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTN 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 218 HLVYRDNWNIQL------TKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYT 265 >gi|254251960|ref|ZP_04945278.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158] gi|124894569|gb|EAY68449.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158] Length = 384 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + K +T + ++ +Y Sbjct: 135 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKLPMTDQLEVTDEDRDYEK 189 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 190 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMADT 249 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ L +P + + E+ GK+ Y +TN Sbjct: 250 HFENSTG-LSSSNVSSARDLVKL-VNAAYQYPLIRKFSTDRTYEVYTGKRNLVYNSTNAL 307 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 W +G KTGF +G +V A + ++ V+L + + +R +A Sbjct: 308 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRFADAAR 361 Query: 259 L 259 L Sbjct: 362 L 362 >gi|171320025|ref|ZP_02909096.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MEX-5] gi|171094718|gb|EDT39761.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MEX-5] Length = 370 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 27/241 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG + + H P AS++KLMTA VV + K+ +T + ++ +Y Sbjct: 121 VVDQNTGEPLFDKN-SHAVVPIASISKLMTAMVVL----DSKSPMTDQLEVTDEDRDYEK 175 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ T Sbjct: 176 GTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKTLGMNDT 235 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-- 204 HF N+ G + + ++ARD+ + +P + + ++ GK+ Y +TN Sbjct: 236 HFENSTG-LSSSNVSSARDLVKM-VNAAYQYPMIRQFSTDRTYDVYTGKRNLVYNSTNAL 293 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 W +G KTGF +G +V A + ++ V+L + + +R +A Sbjct: 294 IRGNGSWDIGL------QKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFADAAR 347 Query: 259 L 259 L Sbjct: 348 L 348 >gi|282865542|ref|ZP_06274593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] gi|282559586|gb|EFB65137.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces sp. ACTE] Length = 905 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 26/209 (12%) Query: 54 ASLTKLMTAYVVFSF----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAYV+ +K + K A+ S + +KG T L+ Sbjct: 582 ASMAKVMTAYVILQGHPITGDQKGEQIEVDEQAGKEAAITDESTAAIEKGDKFTEYQMLQ 641 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +L++ S N++A +A TEK F++ MN +K+LG++ T + + G ++ +T D Sbjct: 642 MLMIPSGNNVARLLARWDAGTEKAFIEKMNAAAKDLGMTNTTYTDPSG-LKASTMSTPAD 700 Query: 170 MAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L +R D PQ I G+ G+ Y N N+ + G +G+KTG + Sbjct: 701 QITLGKAVMRNDVFREVVDMPQA----DIPGV---GRIY-NNNYIL-LEDGVNGIKTGSS 751 Query: 222 CASGFNIVASA---IQG-DQSLIAVILGA 246 +G N++ +A + G + +I ++GA Sbjct: 752 TPAGGNLLWTANTVVDGKPRRIIGAVMGA 780 >gi|301629534|ref|XP_002943893.1| PREDICTED: d-alanyl-D-alanine endopeptidase-like [Xenopus (Silurana) tropicalis] Length = 356 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 ASLTKLMT ++ E + P+TI+++ + S S G+T+T L L + Sbjct: 137 ASLTKLMTGLLI----SEAHLSMDEPLTITQDDVDTEKGSRSRLSVGTTLTRGEMLHLAL 192 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ + FV MN ++ LG++ T ++ G+ H + ++ARD+A Sbjct: 193 MSSENRAAHALGRTYPGGLGAFVARMNAKARQLGMTDTRYVEPTGLSSH-NQSSARDLAT 251 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWAVGTFLGADGM-KTGFTCASGFN 227 L D P G E+ G++ + NTN V + G+ KTG+ +G Sbjct: 252 LVNVAHGD-PLLRELSTSPGYEVAVGRRTLQFNNTNRLVSSPAWDIGLQKTGYIAEAGRC 310 Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252 +V A + +I V L + + +R Sbjct: 311 LVMQAQVAGRQIIMVFLDSAGKFSR 335 >gi|152987366|ref|YP_001349992.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PA7] gi|150962524|gb|ABR84549.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PA7] Length = 310 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D N+G V+ PD AS+TKLMTA VV +L PI IS+ SE S Sbjct: 46 DQNSGKVLYSRNPDLVVPIASITKLMTAMVVLDSKLPLDEVL--PIAISET-SEMRGVFS 102 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 + GS ++ + L L ++ S N A ++A++ + FV+ MN + LG+ T ++ Sbjct: 103 RVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVE 162 Query: 155 AHGVVQHGHYTTARDMAIL 173 G+ H + +TARD+ L Sbjct: 163 PTGLSLH-NVSTARDLTRL 180 >gi|330808569|ref|YP_004353031.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376677|gb|AEA68027.1| putative serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 312 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPP 91 LLD T V+ + PD AS+TKLMT +V + K L I+I+ N E Sbjct: 47 LLDLQTDKVVYSSNPDVVVPIASVTKLMTGLIVL----DAKQNLDEYISITIANTPEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K S ++ + L + ++ S N A ++A F+ MN +K LG+++TH Sbjct: 103 VFSRVKLNSELSRRDVLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTH 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNT-- 203 ++ G+ H + +TARD+ L + +P K + +K + NT Sbjct: 163 YVEPTGLSIH-NVSTARDLTKLLIAAR-KYPLLSELSTTKEKTVTFRKPVYSLGFRNTDH 220 Query: 204 -----NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT +G +V G++ + VIL A + T Sbjct: 221 LIHKANWDIQL------TKTGFTNEAGHCLVLVTKMGNRPMALVILDAFGKFT 267 >gi|237732182|ref|ZP_04562663.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2] gi|226907721|gb|EEH93639.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2] Length = 314 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 44 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 97 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A F++ MN +K LG++ Sbjct: 98 KGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTQ 157 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 158 TRFVEPTGLSIH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFANPAYTL-P 211 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 212 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 264 >gi|329919680|ref|ZP_08276658.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN 1401G] gi|328937332|gb|EGG33756.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN 1401G] Length = 423 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ + K T + S+ A S+ P SN + G T+ + Sbjct: 86 ASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 145 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 146 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 205 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + NW + Sbjct: 206 NKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 265 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 266 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 325 Query: 263 GFYN 266 FYN Sbjct: 326 YFYN 329 >gi|300902216|ref|ZP_07120216.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1] gi|301305178|ref|ZP_07211277.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1] gi|300405735|gb|EFJ89273.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1] gi|300839582|gb|EFK67342.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1] gi|315255353|gb|EFU35321.1| Penicillin-binding protein 7 [Escherichia coli MS 85-1] Length = 313 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT I N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKAIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 268 >gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] Length = 400 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +T V+ E + AS+TKLMT VV ++ ML +++ S Sbjct: 153 VIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLEV---TAEDIDREKNS 209 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + GS ++ N L + ++ S N A A+ + FV MN +K+LG+ TH+ Sbjct: 210 SSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMRGTHY 269 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 +++ G+ + + +ARD+A L Sbjct: 270 VDSTGLSSN-NVASARDLAKL 289 >gi|26248513|ref|NP_754553.1| D-alanyl-D-alanine endopeptidase [Escherichia coli CFT073] gi|227887189|ref|ZP_04004994.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972] gi|300978674|ref|ZP_07174364.1| beta-lactamase [Escherichia coli MS 45-1] gi|301048867|ref|ZP_07195861.1| beta-lactamase [Escherichia coli MS 185-1] gi|26108918|gb|AAN81121.1|AE016763_80 Penicillin-binding protein 7 precursor [Escherichia coli CFT073] gi|227835539|gb|EEJ46005.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972] gi|300299322|gb|EFJ55707.1| beta-lactamase [Escherichia coli MS 185-1] gi|300409606|gb|EFJ93144.1| beta-lactamase [Escherichia coli MS 45-1] gi|307554203|gb|ADN46978.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972] gi|315294501|gb|EFU53849.1| beta-lactamase [Escherichia coli MS 153-1] Length = 313 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS++KLMTA VV A L + + S+ P Sbjct: 48 IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD------ARLPLDEKLKVDISQTPEM 101 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A K F++ MN +K+LG++ Sbjct: 102 KGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNN 161 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 162 TRFVEPTGLSVH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFSNPTYTL-P 215 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G + + ++ + V++ A + T Sbjct: 216 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLAMRTVINNKPVALVVMDAFGKYT 268 >gi|325277519|ref|ZP_08143117.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51] gi|324097346|gb|EGB95594.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51] Length = 312 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NT + N+ D AS+TKLMTA VV MLT +TI+ N E Sbjct: 52 LIDLNTNQELYSNHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PEMKGV 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A + F++ MN +++LG++ T + Sbjct: 109 YSRVRPGSQLNRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRY 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD++ L + +Y ++ K + N+ +G F Sbjct: 169 VEPTGLSTQ-NVSTARDLSKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 222 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 223 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 272 >gi|312875038|ref|ZP_07735056.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2053A-b] gi|311089433|gb|EFQ47859.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF 2053A-b] Length = 425 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ + K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIKQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + NW + Sbjct: 208 TKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|205359523|ref|ZP_02830125.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205345065|gb|EDZ31829.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 302 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV +L I+ E Sbjct: 32 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDIS---QTPEMKGV 88 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG++ T F Sbjct: 89 YSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRF 148 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKT------------DFPQYMHYFQIKGLEIKGKKY 200 + G+ H + +TARD+ L K D + H Sbjct: 149 VEPTGLSIH-NVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLV 207 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW + KTGFT A+G +V + ++ + V++ A + T Sbjct: 208 YRDNWNIQL------TKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYT 252 >gi|269123281|ref|YP_003305858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptobacillus moniliformis DSM 12112] gi|268314607|gb|ACZ00981.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptobacillus moniliformis DSM 12112] Length = 375 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 20/275 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNP-ASLTK 58 M++ L++I LS I+ + I + ++P YT L T+ VI N +P ASLTK Sbjct: 1 MKKILILICTFSLS-IYG-MEIEKKERIPIIYTAL-TDGTEVIDIN--SELISPIASLTK 55 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 +M V + + K L+ +T K A S S + ++ TL++ LK ++ S+N Sbjct: 56 VMNVIVAKDEISKGKFSLSDKVTFDKYTAFITGGSISAWSGDNSYTLEDLLKAQMIFSSN 115 Query: 118 DIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGV---VQHG---HYTTARDM 170 + A A A+ + + F+ MN ++ LG+ T+F + G+ + G +TA+D+ Sbjct: 116 NAAYATAKHIGLGDIDNFIILMNKKARELGMYNTYFASPAGLPPRLNKGFGMDISTAKDL 175 Query: 171 AILS-WRIK-TDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 +L+ + I+ TD +Y + I + + Y N +G + G G+KTG+ +GF Sbjct: 176 YLLAKYAIENTDILEYSNKKSITFPNSRDPLRMYYNRITMLGEY-GVVGLKTGYHDEAGF 234 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NI+ + GD ++I++ L + R + +LS Sbjct: 235 NIIIISKIGDSTVISISLNSETEKQRYILQREILS 269 >gi|145588924|ref|YP_001155521.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047330|gb|ABP33957.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 342 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +T V E P AS+TKLMTA VV + K L I I++ Y Sbjct: 100 VVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVL----DSKLPLNETIVINEQ-DVYIYK 154 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S G+ ++ ++AL L ++ S N A + + FV MN +K LG+ +HF Sbjct: 155 HSRLAGGTALSREDALHLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKELGMDHSHF 214 Query: 153 MNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + G++ + ++A D+ A +++ +F + + + + +K+ NTN V Sbjct: 215 ADPTGLMSE-NVSSAEDLTRMLNAAYQYKLIREFSTWPDLTMV--IANRPQKFLNTNRLV 271 Query: 208 GTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + G+ KTGF A+G +V A + L+ V L ++ +R Sbjct: 272 RSGDMDIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSR 317 >gi|259501428|ref|ZP_05744330.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM 13335] gi|259167177|gb|EEW51672.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM 13335] Length = 429 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ + K T + S+ A S+ P SN + G T+ + Sbjct: 92 ASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 151 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 152 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 211 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A DM IL + +FPQ + +I L + NW + Sbjct: 212 NKNADAENELSASDMGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 271 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 272 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 331 Query: 263 GFYN 266 FYN Sbjct: 332 YFYN 335 >gi|145508567|ref|XP_001440233.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407439|emb|CAK72836.1| unnamed protein product [Paramecium tetraurelia] Length = 456 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 122/296 (41%), Gaps = 58/296 (19%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP---ITISKNAS 87 + + D ++++ + ASLTK+MT Y+ L K L + + ++K AS Sbjct: 171 FIVYDCIENRIVSQRKCNKRMEIASLTKIMTFYITMVILA--KFNLNSKEIRVKVTKKAS 228 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES--------------------- 126 E + S K +T+ + L L++ S ND A+ IA++ Sbjct: 229 ETIGTTSELKYNDILTIQDLLYGLMLPSGNDAAILIAQTIGTIILFYESNKYLDSTLIDI 288 Query: 127 -----------------LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LC E F+ MN S +G T F HG+ +Y++ D Sbjct: 289 EQMSAEGHYYNVELKTQLCPIEI-FISKMNYYSNLMGQQNTQFACVHGLANEDNYSSCHD 347 Query: 170 MAILSWR-IKTD-FPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCAS 224 + +LS +K D F Q + + + KY NTN + G G+KTG T ++ Sbjct: 348 IVLLSLECLKYDIFHQVISCKEYISKSLNNNKYYEWKNTNKLLEK--GFFGIKTGITDSA 405 Query: 225 GFNIVASAIQGDQS--LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 G +ASA + ++ I V+L + R + SLL Y +K +N II+ Sbjct: 406 G-PCLASAYRSNEKEYYIIVVLSCKNLQLRFDETISLLQHAKY----KKSLNSIIQ 456 >gi|255323933|ref|ZP_05365059.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium tuberculostearicum SK141] gi|255299113|gb|EET78404.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium tuberculostearicum SK141] Length = 397 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 35/239 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G +IA P+ + PAS+ K + A VV L L + + + +++ Sbjct: 95 WMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDELD-----LHQKVEVGEESAQID 149 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T T++ L+ L++ S ND A A+A+ L E + +N + +G ++T Sbjct: 150 GSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEATL-RKVNEKAAEIGTNST 208 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------EIKGKKYPNTN 204 + + G+ G T+A D++ + +R P + + + ++ G + N N Sbjct: 209 YAASYSGLDAPGMSTSAEDISRI-YRAAFHNPTFARIVDTESVDFPGWGDLDGYQLGNDN 267 Query: 205 WAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G FL DG+ KTGFT + V GALDR+ R ++ A LL Sbjct: 268 ---GLFLNDPDGIGGKTGFTDDAHHTFV---------------GALDRHGR-RLQAVLL 307 >gi|170694729|ref|ZP_02885880.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia graminis C4D1M] gi|170140360|gb|EDT08537.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia graminis C4D1M] Length = 394 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG + + AS+TKLMTA VV + K +T + ++ +Y Sbjct: 145 VVDQNTGESLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQLEVTDEDRDYEKN 200 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN ++ LG++ TH Sbjct: 201 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGMTDTH 260 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F N G+ + ++ARD+ + +P + + E+ GK+ Y +TN Sbjct: 261 FENPTGLTSQ-NVSSARDLVKM-VNAAYQYPLIRRFSTDRSYEVYTGKRTLAYNSTNALV 318 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W +G KTGF +G +V A + ++ V+L + + +R A+ L Sbjct: 319 RNPTWEIGL------QKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSRF-ADATRL 371 Query: 261 SMGFYNKTDRKKI 273 N D+ +I Sbjct: 372 RTWLDNGGDQARI 384 >gi|326565231|gb|EGE15416.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 12P80B1] Length = 386 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 22/235 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 + D G +I D + AS++K+MTA V+ ++E+ ++ + + +K AS Sbjct: 144 VYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMREEITLIASDLIGAKQAS-- 201 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + K G MT +++++S N A A+A + F+ MN + +LG+ Sbjct: 202 ----TRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQ 257 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHYFQIKGLEIKGK 198 T F ++ G+ H + ++A D+ I+ S R + P Y Y G + Sbjct: 258 TKFSDSSGLDPH-NMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIY 316 Query: 199 KYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K NTN V G+ KTG+ +G+++V ++ I V+LGA + R Sbjct: 317 KGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANR 371 >gi|150015827|ref|YP_001308081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149902292|gb|ABR33125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 440 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 T + G +T D+ +K L++ S ND A IA+++ K F + MN +K LG + ++F+ Sbjct: 118 TMQPGDKVTSDDIMKGLLLFSGNDTAYVIADNISGDVKSFAELMNKKAKELGANNSNFVT 177 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKGKK----YPNTNWAVG 208 +G+ HYTTA D++I+ +K F P +++ I K N N +G Sbjct: 178 PNGLHDPNHYTTAYDLSII---MKAAFANPWERETMELEKAPITLKNSRIILENRNLTLG 234 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G KTG T +G + + + LI ++L Sbjct: 235 KNGNLAG-KTGTTNEAGGCLATVYDRDGRQLIGIVL 269 >gi|262280670|ref|ZP_06058453.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus RUH2202] gi|262257570|gb|EEY76305.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus RUH2202] Length = 348 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 18/239 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ + AS+TKLMTA V + L + ++ I + + Sbjct: 109 VMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEIMLEQIDFA--GANGKN 166 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ST + G M L ++KS N A A+A + FV MN+ ++ LG++ATH Sbjct: 167 SSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNSKARALGMNATH 226 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPNTN 204 + + G+ + ++ARD+ IL+ + QY Q L + K NTN Sbjct: 227 YYESTGLDPR-NVSSARDLGILA----STASQYGLIRQFSTTPTYDFNLGYRVLKSNNTN 281 Query: 205 WAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 V G + + KTG+ +G +V + + V+LG RN + +LLS Sbjct: 282 ALVRNGGW-NINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSSQARNNDATNLLS 339 >gi|332639010|ref|ZP_08417873.1| D-alanyl-D-alanine carboxypeptidase [Weissella cibaria KACC 11862] Length = 421 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 29/239 (12%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK----AMLTTPITISKNASEYP 90 D TG V+A+ + AS++KL+T Y+V +KE + + + P +I ++E Sbjct: 41 DVQTGQVLADKNGNERMPIASISKLLTVYLVEQAIKEGRLSMQSQIKVPASIVAISNEPA 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 +N T+ +++ ++KSAN A+A+ ++ T+ Q + + + G+ T Sbjct: 101 LANVPLSTERAYTIQELMEMALIKSANAAALALGYAVSGTDTGVNQQIQDLLTSWGIKDT 160 Query: 151 HFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 ++ G+ G T +AR++AI+ + TD+P+ ++ E+ Sbjct: 161 TIVSGAGLTNGDMGALTNPKLGADVENELSARELAIVGRHLVTDYPEIQQITSMQTAEVP 220 Query: 197 GKKYPNTNWAVGTFLGAD-------GMKTGFTCA--SGFNIVASAIQGDQSLIAVILGA 246 L AD G+KTG+ + S F I + ++G Q ++ V+LG+ Sbjct: 221 SGATGTETIENSDKLLADGQGYKFTGLKTGYALSVHSTF-IGLTTLEGRQ-VVTVVLGS 277 >gi|254557717|ref|YP_003064134.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum JDM1] gi|254046644|gb|ACT63437.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum JDM1] Length = 444 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 40/227 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------ 87 +D +TG ++ + P AS+TK+++ Y+V + E K I++SK + Sbjct: 50 VDASTGQILYDKNSSKPMAIASMTKMLSTYLVLKAIHEDKLSWNQKISVSKAVAKMSQNT 109 Query: 88 EYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 EY P ST K S L NA ++ SAN A+ +++ T KFV M T+K+ Sbjct: 110 EYANVPLLST-KTYSVRQLYNATEIY---SANAAITALGDAVAGTPHKFVSLMRKTAKSW 165 Query: 146 GLSATHFMNAHGVVQHGHYTT---------------ARDMAILSWRIKTDFPQYM----- 185 G++ +NA G+ +T A+D+A ++ ++ +D+P+ + Sbjct: 166 GITDATIINASGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSI 225 Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGTF------LGADGMKTGFTCASG 225 H + KG K N N+ + L DG+KTG + +G Sbjct: 226 AHAWFEKGTS-SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAG 271 >gi|119773214|ref|YP_925954.1| D-alanyl-D-alanine endopeptidase [Shewanella amazonensis SB2B] gi|119765714|gb|ABL98284.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella amazonensis SB2B] Length = 303 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 16/237 (6%) Query: 25 TNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 T +L Y+ L+DT T V+ + P AS++KLMTA V + K L I + Sbjct: 34 TQELASYSALLVDTKTNEVLYASNPHQVVPIASISKLMTAMVTL----DAKLPLGEKIAV 89 Query: 83 S-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 K+ E S + GST++ A+ L ++ S N A +A + FV+ MN Sbjct: 90 EVKDNPEMKNVVSRIRLGSTLSRKEAMLLTLMSSENRAATTLAHHYPGGYQAFVKAMNAK 149 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKK 199 +K LG++ T F+ G+ H + +TA D+ L + D+P + K + + Sbjct: 150 AKALGMTNTRFVEPTGLSVH-NVSTAADLVKL-LKAAQDYPLLGQLSSTPSKSVTFGKPR 207 Query: 200 YPNTNWAVGTFLGADG-----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 Y + + D KTGFT A+G +V + + V+L + + T Sbjct: 208 YSLAFYNTNRLVNKDNWDIRLTKTGFTDAAGHCLVMLTKMAKRDVAFVVLDSFGKQT 264 >gi|329942386|ref|ZP_08291196.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila psittaci Cal10] gi|332287027|ref|YP_004421928.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC] gi|325506477|gb|ADZ18115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC] gi|328815296|gb|EGF85284.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila psittaci Cal10] Length = 398 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 29/241 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV----------FSFLKEKKAMLTTPITI 82 ++ TG V+ D PAS+TK+ TA + F +K TP Sbjct: 3 VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 62 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKF 134 ++ PP + G T+ L N ++ L++ SAND A A+A + + +F Sbjct: 63 KQSGYRSPP-HWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEF 121 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYMHY--FQI 190 ++ +N+ + +G + THF N HG+ HYTTA D+ I+ +K F Q + +++ Sbjct: 122 MKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKEPLFRQVIRTTNYKM 181 Query: 191 KGLEIKGKKYPN-TNWAV--GT---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + ++ N TN + G+ + A G KTG T +G N+V +A + +S+I + Sbjct: 182 APTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAA 241 Query: 245 G 245 G Sbjct: 242 G 242 >gi|259502317|ref|ZP_05745219.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169697|gb|EEW54192.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 407 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 33/278 (11%) Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +R+ LV+I + ML+ I ++ ++D +TG V+ E + AS++K Sbjct: 3 VRKILVLIMILPLMLAGIATDAMASDRINARAAVMIDASTGQVLYEQNANQKLPVASISK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNSTF--KKGSTMTLDNALKLLIVK 114 L+T V+ LK++ T + +S + + PS S + G T+ L +VK Sbjct: 63 LLTVAVIHDELKQRVITADTKVNVSSDVAAIASDPSYSAIGVQAGQAYTVRELLNAAMVK 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SA+ +A+A + ++F M+ ++ +GL +N G+ Sbjct: 123 SADGATLALAGADGSNMEEFNLKMDQKAREIGLRNFTIVNPVGLTNGDLKGLKLEQYADN 182 Query: 163 --HYTTARDMAILSWRIKTDFPQYMH--------YFQIKGLEIKG----KKYPNTNWAVG 208 + TA D+A L+ + +P + ++ K K K P +AV Sbjct: 183 AENAMTANDVARLARYLIQTYPDLLQVTAQRSANFYIAKDKATKAENLNKMLPGDRYAV- 241 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + DG+KTG + A+G + V++ + +I V+L A Sbjct: 242 SGVKIDGLKTGTSAAAGPSFVSTGLYRGHRVITVVLHA 279 >gi|218660826|ref|ZP_03516756.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771] Length = 245 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%) Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + +G F N+ G+ TAR+M L+ ++ +P YF + E N Sbjct: 1 REIGHDKAVFGNSTGLPNGKSRVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRN 60 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +G LGADG+ TGFT G++IVAS + + L + G R + + +L Sbjct: 61 RNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEW 120 Query: 263 GFYNKTDRK 271 G +R+ Sbjct: 121 GLTAFENRQ 129 >gi|330817668|ref|YP_004361373.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia gladioli BSR3] gi|327370061|gb|AEA61417.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia gladioli BSR3] Length = 383 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS++KLMTA VV + KA L IT++ +Y + S GS ++ ++ L + + Sbjct: 156 ASISKLMTAMVVL----DSKASLDEQITVTDEDRDYEKGTGSRLSVGSVLSREDMLHIAL 211 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + S N A A++ F+ MN +K+LG++ THF N+ G+ + ++ARD+ Sbjct: 212 MASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTDTHFENSTGLTSL-NVSSARDL 268 >gi|91792455|ref|YP_562106.1| D-alanyl-D-alanine endopeptidase [Shewanella denitrificans OS217] gi|91714457|gb|ABE54383.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella denitrificans OS217] Length = 298 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 L+D NT V+ + PD AS+TKLMTA V + K L I+I N + E Sbjct: 45 LVDLNTDEVLYASNPDRVMPIASVTKLMTAMVTL----DAKLPLEQKISIKINETKEMRN 100 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ + L L ++ S N A ++A F++ MN+ +K LG++ + Sbjct: 101 VYSRVRIGSELSRKDMLLLALMSSENRAAASLAHHYPGGYAAFIRAMNDKAKALGMTKSS 160 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F+ G+ + + ++ARD+ +L Sbjct: 161 FVEPTGLSRK-NVSSARDLVML 181 >gi|311278881|ref|YP_003941112.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter cloacae SCF1] gi|308748076|gb|ADO47828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter cloacae SCF1] Length = 314 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI + PD AS+TKLMTA VV ML I+ E Sbjct: 45 IVDLNTNQVIYASDPDLVRPMASITKLMTAMVVLDAHLPLDEMLKVDIS---QTPEMKGV 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG++ T + Sbjct: 102 YSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTHTRY 161 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + + N + + F Sbjct: 162 VEPTGLSIH-NVSTARDLTKLLIATK----QYPLIGQLSTTKEDTATFRNPAYTL-PFRN 215 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 216 TNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVMNNRPVAMVVMDAFGKYT 265 >gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99] gi|118569226|gb|ABL03977.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99] Length = 415 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 36/248 (14%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D ++G +IA P PAS+ K++ V L + KA+ P T +A+E + Sbjct: 111 DLDSGAIIAARDPHGRHRPASIIKVLVVMVSIKELNQNKAV---PGTNDDSAAEG--TKV 165 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G T++ L L++ S ND A A+A L + + +N + LG T Sbjct: 166 GVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQTAL-EKINMLAAKLGGRDTRVAT 224 Query: 155 AHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKGKKYP 201 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 225 PSGLDGPGMSTSAYDIGLFYRYAWQNPIFADIVATRTFDFPGHGEH---PGYELE----- 276 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----S 256 N N + + GA G KTG+T +G V +A + L AV+L TR + + Sbjct: 277 NDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLL----HGTRQPIAPWEQA 332 Query: 257 ASLLSMGF 264 A LL GF Sbjct: 333 AHLLDYGF 340 >gi|291524311|emb|CBK89898.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629] gi|291527663|emb|CBK93249.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1] Length = 367 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 110/271 (40%), Gaps = 56/271 (20%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----- 75 +I + + Y ++D G V+A PAS+TK+MT +V + EK A+ Sbjct: 89 AIGDELESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTV-LVAAEQAEKNAIAAAEN 147 Query: 76 --------------LTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSAN 117 L +TI++ A++Y S + F G + L + I+ S Sbjct: 148 ENTEIDRQAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGG 207 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYTTARDMA-ILSW 175 + A +A + + FV MN + LG+ THF N G+ +Y+TA DMA I+ Sbjct: 208 ESAYQLAVYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVIMQA 267 Query: 176 RIKTDF---------------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 ++ D PQ+ I L ++ + T+ G +GA KTGF Sbjct: 268 AMQDDICKTVLSNHTYSTAATPQHPENLNISNLFLRRIEDKMTS---GEVIGA---KTGF 321 Query: 221 T-----CASGFNIVASAIQGDQSLIAVILGA 246 CA + AS ++ I V GA Sbjct: 322 VNQSGNCAVSYEKAASG----KTYICVTAGA 348 >gi|118381024|ref|XP_001023674.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89305441|gb|EAS03429.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 1098 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 55/248 (22%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTK+MT YV FL+E + + I +SK A++ + + +KG ++ L L+ Sbjct: 805 ASLTKIMTCYVTIKFLEENQLDIKNVFIEVSKAATKTIGTTANLEKGDFVSTYELLYGLM 864 Query: 113 VKSANDIAVAIAESL---------------------------------CKTEKK------ 133 + S ND AV ++E + CK+E Sbjct: 865 LPSGNDAAVVLSEGVGYLLYCQQSKLSFTNDNTSSGVPGDQKIYVNYKCKSEAGGLNQCM 924 Query: 134 --FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYM----H 186 F++ MN ++ +GL T++ HG+ + +TA+D+ +LS + K Q + Sbjct: 925 NIFIKEMNKQAQKVGLERTNYACVHGLSNKYNTSTAKDVGLLSCIVMKHPLIQKVVNTKE 984 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVAS---AIQGDQ-S 238 Y + L+ + W + G DG+KTG T +G + +S G Q Sbjct: 985 YETVDVLDQEKSNQDQYEWENTNQMLEKKGYDGVKTGVTETAGPCLSSSYKCKRNGKQVG 1044 Query: 239 LIAVILGA 246 LI V+L Sbjct: 1045 LICVLLNC 1052 >gi|300769513|ref|ZP_07079399.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181803|ref|YP_003925931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ST-III] gi|300492928|gb|EFK28110.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047294|gb|ADN99837.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 444 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 40/227 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------ 87 +D +TG ++ + P AS+TK+++ Y+V + E K I++SK + Sbjct: 50 VDASTGQILYDKNSSKPMAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNT 109 Query: 88 EYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 EY P ST K S L NA ++ SAN A+ +++ T KFV M T+K+ Sbjct: 110 EYANVPLLST-KTYSVRQLYNATEIY---SANAAITALGDAVAGTPHKFVSLMRKTAKSW 165 Query: 146 GLSATHFMNAHGVVQHGHYTT---------------ARDMAILSWRIKTDFPQYM----- 185 G++ +NA G+ +T A+D+A ++ ++ +D+P+ + Sbjct: 166 GITDATIINASGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSI 225 Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGTF------LGADGMKTGFTCASG 225 H + KG K N N+ + L DG+KTG + +G Sbjct: 226 AHAWFEKGTS-SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAG 271 >gi|328914259|gb|AEB55092.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC] Length = 412 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 29/241 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV----------FSFLKEKKAMLTTPITI 82 ++ TG V+ D PAS+TK+ TA + F +K TP Sbjct: 17 VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 76 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKF 134 ++ PP + G T+ L N ++ L++ SAND A A+A + + +F Sbjct: 77 KQSGYRSPP-HWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEF 135 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYMHY--FQI 190 ++ +N+ + +G + THF N HG+ HYTTA D+ I+ +K F Q + +++ Sbjct: 136 MKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKEPLFRQVIRTTNYKM 195 Query: 191 KGLEIKGKKYPN-TNWAV--GT---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + ++ N TN + G+ + A G KTG T +G N+V +A + +S+I + Sbjct: 196 APTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAA 255 Query: 245 G 245 G Sbjct: 256 G 256 >gi|28379575|ref|NP_786467.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum WCFS1] gi|28272415|emb|CAD65338.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum WCFS1] Length = 444 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 40/227 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------ 87 +D +TG ++ + P AS+TK+++ Y+V + E K I++SK + Sbjct: 50 VDASTGQILYDKNSSKPMAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNT 109 Query: 88 EYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 EY P ST K S L NA ++ SAN A+ +++ T KFV M T+K+ Sbjct: 110 EYANVPLLST-KTYSVRQLYNATEIY---SANAAITALGDAVAGTPHKFVSLMRKTAKSW 165 Query: 146 GLSATHFMNAHGVVQHGHYTT---------------ARDMAILSWRIKTDFPQYM----- 185 G++ +NA G+ +T A+D+A ++ ++ +D+P+ + Sbjct: 166 GITDATIINASGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSI 225 Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGTF------LGADGMKTGFTCASG 225 H + KG K N N+ + L DG+KTG + +G Sbjct: 226 AHAWFEKGTS-SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAG 271 >gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] Length = 429 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 23/250 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D TG V+A P + PAS K++ A V L L T IT + ++ Sbjct: 110 WVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELD-----LDTEITATAEDADAE 164 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S KG T ++ L++ S ND A A+A L + V MN + LG T Sbjct: 165 GSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGG-DAAAVSKMNALAAELGALDT 223 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP-------- 201 G+ G +++ D+A++ + P + + +E G K P Sbjct: 224 RTATPSGLDGPGMSSSSYDLAVI-FHTALQNPTFAGLIHTETVEFPGFPKDPTIPDDQDR 282 Query: 202 ------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-K 254 N N + + GA G KTGFT + V +A + + L+ ++G + R + Sbjct: 283 PGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLMGGEAKPIRPWE 342 Query: 255 VSASLLSMGF 264 +A LL G+ Sbjct: 343 QAARLLDYGY 352 >gi|238925374|ref|YP_002938891.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Eubacterium rectale ATCC 33656] gi|238877050|gb|ACR76757.1| predicted D-alanyl-D-alanine carboxypeptidase precursor [Eubacterium rectale ATCC 33656] Length = 367 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM----- 75 +I + + Y ++D G V+A PAS+TK+MT +V + EK A+ Sbjct: 89 AIGDELESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTV-LVAAEQAEKNAIAAAEN 147 Query: 76 --------------LTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSAN 117 L +TI++ A++Y S + F G + L + I+ S Sbjct: 148 ENTEIDRQAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGG 207 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHGHYTTARDMAIL 173 + A +A + + FV MN + LG+ THF N G+ +Y+TA DMA++ Sbjct: 208 ESAYQLAVYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVI 264 >gi|256394922|ref|YP_003116486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora acidiphila DSM 44928] gi|256361148|gb|ACU74645.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora acidiphila DSM 44928] Length = 311 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 29/243 (11%) Query: 37 NTGHVIAENYPDHPWNP-ASLTKLMTAYVVFS-----FLKEKKAMLTTPITISKNASEYP 90 TG + P+ P AS+TK+MTAY+V ++ A+ T ++ A Sbjct: 69 ETGQSRVQAGPNQHAAPIASVTKVMTAYLVLRDHPLRAGQDGPALTLTDADVADTAQRRS 128 Query: 91 PSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S G +T AL+ L++ SAN+IAV +A + +FV MN T+++LG+ Sbjct: 129 QDQSIVPVAAGEHLTERQALQALLLPSANNIAVVLARWDAGSVDQFVARMNATAQSLGMR 188 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGKKYPNTNWA 206 T + + G + T + I++ ++ P + + L + G NT+ Sbjct: 189 DTRYTDPSGFDEATVSTAVDQVQIVARAMR--LPVFADIVAMPSAALPVAG-TVANTD-- 243 Query: 207 VGTFLGAD---GMKTGFTCASG----FNIVASAIQGDQSLI-AVILGALDRNTRNKVSAS 258 T +G D G+KTG A+G F V + I G Q+ I V+LG + N+++A Sbjct: 244 --TLVGHDGFVGVKTGSDDAAGGCFAFQAVRT-IGGKQTTITGVVLG---QPGANQIAAG 297 Query: 259 LLS 261 L++ Sbjct: 298 LMA 300 >gi|46203464|ref|ZP_00208979.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 215 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%) Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 TARD+++L+ + DFP+Y F G K N N + GADG+KTG T A+G Sbjct: 3 TARDLSVLARHLIGDFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEAAG 62 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + AS +G++ +I V+ G R + S L F Sbjct: 63 YGLTASIKRGNRRIIMVLNGMSSMKERAEESRRLTEWAF 101 >gi|300786276|ref|YP_003766567.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|299795790|gb|ADJ46165.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] Length = 307 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 16/201 (7%) Query: 54 ASLTKLMTAYVVFS----FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+MTAYVV E +T A+ S++ + G + + L Sbjct: 78 ASVTKVMTAYVVLKDHPLGADEAGPEVTVDEQAEAEATSAEESSAPVRAGRRFSERDLLA 137 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++V S N++A +A ++ FV MN + LG+++T + A G V+ +TA D Sbjct: 138 LMLVPSGNNVARLLARWDAGSQDAFVAKMNREAAALGMTSTSYTGASG-VEDSTTSTATD 196 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGAD---GMKTGFTCAS 224 L+ R P L I G NTN T LG D G+KTG + A+ Sbjct: 197 QLRLA-REAMKNPVIRAIAATPSLRIDGVPGAVVNTN----TLLGHDGVIGLKTGSSTAA 251 Query: 225 GFNIVASAIQGDQSLI-AVIL 244 G ++ +A D +LI V+L Sbjct: 252 GGALMWAAQARDGALILGVVL 272 >gi|145599789|ref|YP_001163865.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Pestoides F] gi|186894625|ref|YP_001871737.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis PB1/+] gi|108776609|gb|ABG19128.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Yersinia pestis Nepal516] gi|108778797|gb|ABG12855.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Yersinia pestis Antiqua] gi|145211485|gb|ABP40892.1| penicillin-binding protein 7 precursor [Yersinia pestis Pestoides F] gi|186697651|gb|ACC88280.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] Length = 323 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +L+ I +K E Sbjct: 61 VVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDAKLPLDEILSVDIDQTK---ELKGV 117 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG+++TH+ Sbjct: 118 FSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMNSTHY 177 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+A L K QY Q+ K + N+ + F Sbjct: 178 VEPTG-LSINNVSTARDLAKLLMATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 231 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + G + + V+L A + T Sbjct: 232 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYT 281 >gi|126640330|ref|YP_001083314.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii ATCC 17978] Length = 255 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 16 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 71 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 72 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 131 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 132 THYYESTGLDPR-NVSSARDLGILA 155 >gi|283832440|ref|ZP_06352181.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220] gi|291072100|gb|EFE10209.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220] Length = 315 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 45 IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLNEKLKVDISQTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ + L L ++ S N A ++A F++ MN +K LG++ Sbjct: 99 KGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTQ 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + N + + Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKLLIASK----QYPLIGQLSTTREDMATFANPAYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + ++ + V++ A + T Sbjct: 213 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYT 265 >gi|239930641|ref|ZP_04687594.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 855 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAY+V K I I K + S G ++ A++ Sbjct: 532 ASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEISQREAIE 591 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +E+ FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 592 AVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSG-LNNTTVSTAVD 650 Query: 170 M-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 A + + + M Y + KGK +PN N VG+ G G+KTG T ++ Sbjct: 651 QVKLAKAAMQQPVFREVAAMMSYD-----DYKGKNWPNWNQLVGSN-GVVGIKTGTTTSA 704 Query: 225 GFNIVASA---IQGDQSLIAVILGALDRNTRNKVSASLLS 261 N+V +A + G+ L I+GA+ R ++LS Sbjct: 705 LGNLVFAAKKEVDGETRL---IIGAVVRQPAGGKENTILS 741 >gi|260551083|ref|ZP_05825287.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624] gi|260405850|gb|EEW99338.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624] Length = 348 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 109 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGANG 164 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN +++LG++A Sbjct: 165 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARSLGMNA 224 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 225 THYYESTGLDPR-NVSSARDLGILA 248 >gi|239930109|ref|ZP_04687062.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291438449|ref|ZP_06577839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291341344|gb|EFE68300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 299 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 23/253 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89 + + D N G + D + S TK+MTA VV L +K L +TI S+Y Sbjct: 48 FVMNDAN-GKSLYTKAADTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTIQMAYSDYI 103 Query: 90 ---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNN 140 S++ G +T+ L L++ S D A A+A+ K F+ MN Sbjct: 104 VSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRSARVKSFIGKMNA 163 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIK-TDFPQYMHYFQIKGLEIKGK 198 +K LGL THF + G+ +Y+T RD+ I S +K + F + + Sbjct: 164 EAKKLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTTTKT 223 Query: 199 K-------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + NTN + + G G+KTG S + +V +A + +++I +L + Sbjct: 224 GSTRTMAPWTNTNTLLSNYSGTIGVKTGSGSTSKYCLVFAATRNGKTVIGTVLTSSSAAQ 283 Query: 252 RNKVSASLLSMGF 264 R + LL GF Sbjct: 284 RETDAKKLLGYGF 296 >gi|171463757|ref|YP_001797870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193295|gb|ACB44256.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 338 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 16/227 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPP 91 +++ +T V E P AS+TKLMTA VV + K L I I NA + + Sbjct: 96 VVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVL----DSKLPLDEAIVI--NADDIHIY 149 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S G+ +T + AL L ++ S N A + + FV MN +K LG++ +H Sbjct: 150 RTSRLAGGTVLTREEALLLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKELGMNHSH 209 Query: 152 FMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 F + G++ + TA D+ A +++ +F + + + + +K+ NTN Sbjct: 210 FADPTGLMSE-NVATAEDLTRMLNAAYQYKMIREFSTWPDLTMV--IAKRPQKFLNTNRL 266 Query: 207 VGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V + G+ KTGF A+G +V A + L+ V L ++ +R Sbjct: 267 VRSGDMNIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSR 313 >gi|293396038|ref|ZP_06640319.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582] gi|291421536|gb|EFE94784.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582] Length = 274 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 22/228 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ N G + + + ASL+KLMTA VV L K+ M + + + Sbjct: 42 VVNANNGKTLYQKQANRRMPIASLSKLMTAMVV---LDNKRPMGNRVKVTAADRDLLKNT 98 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S GST++ + L + ++ S N A A++ + FV MN ++ LG++ T F Sbjct: 99 HSRLTVGSTLSRRDMLHIALMSSENRAAAALSRYYPGGRRAFVAKMNQKARALGMAHTRF 158 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+ +K Y Y I+ ++ + Sbjct: 159 YDPTGLTPR-NVSTARDL------LKMVNNAY-RYQSIRHFSTDKQQIVRPGRGQLVYRS 210 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 ++G+ KTGFT +G ++ + Q +I ++LG+ R Sbjct: 211 SNGLINNPSWKIQLQKTGFTNEAGHCLIMRTVIKGQPVIMILLGSQQR 258 >gi|225028474|ref|ZP_03717666.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353] gi|224954224|gb|EEG35433.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353] Length = 543 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 105/262 (40%), Gaps = 41/262 (15%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV------VFSFLKEKKAML--TTPITI 82 Y ++D +G V+ + PAS KLMTA V V S +K K ++ TTP T Sbjct: 35 YVVMDAGSGEVLFGQDANKKIYPASTAKLMTAIVCVEKGNVNSVIKTKSDVVYRTTPGTY 94 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S G T + L + ++ SA D ++A + ++K V+ MN Sbjct: 95 SLG----------IGAGVNYTFKDLLHMSLMSSAADATDSLAVGVFGSKKACVEAMNEKC 144 Query: 143 KNLGLSATHFMNAHGV-VQHGH---YTTARDMAILSWRIKTDFP------QYMHYFQIKG 192 K LGL THF N G + G+ Y +A++MA + R P HY KG Sbjct: 145 KELGLKKTHFDNPVGSDIGAGYNETYASAKEMAKI-CRYAMAIPLIRSAVSKAHYSTQKG 203 Query: 193 LEIKGKKYPNTNWAVGTFLGAD-------GMKTGFTCASGFNIVASAIQ-GDQSLIAVIL 244 G TNW + D G K+G T A+G +A+A LI Sbjct: 204 ----GMYVNTTNWFLKGMAYYDRDTYKIIGSKSGTTNAAGHVFIATAADYKGHELICAYF 259 Query: 245 GALDRNTRNKVSASLLSMGFYN 266 G + + + SL F N Sbjct: 260 GNVSKESTFASIRSLFDYAFNN 281 >gi|22126890|ref|NP_670313.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM 10] gi|45440799|ref|NP_992338.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis biovar Microtus str. 91001] gi|51595561|ref|YP_069752.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP 32953] gi|149366829|ref|ZP_01888863.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125] gi|162100180|ref|YP_650800.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Antiqua] gi|162139430|ref|YP_648728.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Nepal516] gi|162418831|ref|YP_001605881.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Angola] gi|165924784|ref|ZP_02220616.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. F1991016] gi|165938339|ref|ZP_02226897.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. IP275] gi|166009970|ref|ZP_02230868.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. E1979001] gi|166211300|ref|ZP_02237335.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. B42003004] gi|167400360|ref|ZP_02305873.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419589|ref|ZP_02311342.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423973|ref|ZP_02315726.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466748|ref|ZP_02331452.1| penicillin-binding protein 7 [Yersinia pestis FV-1] gi|218928339|ref|YP_002346214.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis CO92] gi|229841118|ref|ZP_04461277.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843222|ref|ZP_04463368.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229894160|ref|ZP_04509346.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A] gi|229903394|ref|ZP_04518507.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516] gi|270487204|ref|ZP_06204278.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27] gi|294503194|ref|YP_003567256.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003] gi|21959926|gb|AAM86564.1|AE013903_1 penicillin-binding protein 7 [Yersinia pestis KIM 10] gi|45435657|gb|AAS61215.1| penicillin-binding protein 7 precursor [Yersinia pestis biovar Microtus str. 91001] gi|51588843|emb|CAH20457.1| penicillin-binding protein 7 precursor [Yersinia pseudotuberculosis IP 32953] gi|115346950|emb|CAL19840.1| penicillin-binding protein 7 precursor [Yersinia pestis CO92] gi|149291203|gb|EDM41278.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125] gi|162351646|gb|ABX85594.1| penicillin-binding protein 7 [Yersinia pestis Angola] gi|165913717|gb|EDR32336.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. IP275] gi|165923844|gb|EDR40976.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. F1991016] gi|165991366|gb|EDR43667.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. E1979001] gi|166207071|gb|EDR51551.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. B42003004] gi|166962330|gb|EDR58351.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050309|gb|EDR61717.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056822|gb|EDR66585.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679164|gb|EEO75267.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516] gi|229689569|gb|EEO81630.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697484|gb|EEO87531.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704045|gb|EEO91058.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A] gi|262361233|gb|ACY57954.1| penicillin-binding protein 7 precursor [Yersinia pestis D106004] gi|262365230|gb|ACY61787.1| penicillin-binding protein 7 precursor [Yersinia pestis D182038] gi|270335708|gb|EFA46485.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27] gi|294353653|gb|ADE63994.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003] gi|320015987|gb|ADV99558.1| Murein-DD-endopeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 311 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +L+ I +K E Sbjct: 49 VVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDAKLPLDEILSVDIDQTK---ELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG+++TH+ Sbjct: 106 FSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMNSTHY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+A L K QY Q+ K + N+ + F Sbjct: 166 VEPTG-LSINNVSTARDLAKLLMATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + G + + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYT 269 >gi|291439005|ref|ZP_06578395.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291341900|gb|EFE68856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 853 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAY+V K I I K + S G ++ A++ Sbjct: 530 ASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEISQREAIE 589 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +E+ FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 590 AVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSG-LNNTTVSTAVD 648 Query: 170 M-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 A + + + M Y + KGK +PN N VG+ G G+KTG T ++ Sbjct: 649 QVKLAKAAMQQPVFREVAAMMSYD-----DYKGKNWPNWNQLVGSN-GVVGIKTGTTTSA 702 Query: 225 GFNIVASA---IQGDQSLIAVILGALDRNTRNKVSASLLS 261 N+V +A + G+ L I+GA+ R ++LS Sbjct: 703 LGNLVFAAKKEVDGETRL---IIGAVVRQPAGGKENTILS 739 >gi|302560107|ref|ZP_07312449.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus Tu4000] gi|302477725|gb|EFL40818.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus Tu4000] Length = 471 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 22/224 (9%) Query: 54 ASLTKLMTAYVVFS--FLKEKKAMLTTPI--TISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAY++ LK T + T K +S S G ++ AL+ Sbjct: 149 ASVAKVMTAYLILRDHPLKSGADGPTIDVDQTAEKQSSAGDESTVNVTAGDKISQREALE 208 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 209 AILIASANNVARLVARWDAGSEKAFVEKMNEAAKDLGMTDTTYTDPSG-LNNTTVSTAVD 267 Query: 170 MAILSWRIKTDFPQY------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 L+ + + P + M Y KG+ K+ N N VG G+KTG T + Sbjct: 268 QVKLA-KAAMEQPAFREVAAMMEYIDYKGV-----KHGNWNRLVG-HNNVVGIKTGTTTS 320 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTR----NKVSASLLSMG 263 + N+ +A + I+GA+ R N + A LS G Sbjct: 321 ALGNLSFAAKKDVDGETRRIIGAVVRQPEGGADNTILAGALSAG 364 >gi|116490237|ref|YP_809781.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1] gi|290889619|ref|ZP_06552709.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429] gi|116090962|gb|ABJ56116.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Oenococcus oeni PSU-1] gi|290480817|gb|EFD89451.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429] Length = 440 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 24/174 (13%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----- 92 +G VIAE P+ AS +KL+TAY+V + E K L+ I N Y S Sbjct: 63 SGQVIAEKNPNKKLAIASTSKLLTAYLVLKAIHEGK--LSWNKKIKANQEIYQLSKNPDL 120 Query: 93 -NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL--SA 149 N T K + T+ + ++ S N + + +++ + KF + MN T+ + G+ S Sbjct: 121 MNVTLYKNGSYTIRQLMNSTLLISTNATGILLGDAVSGNQTKFAELMNKTAASFGIPKSE 180 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 F NA G+ Q + +++ +A +++R+ TD+P+ + Q Sbjct: 181 FKFYNAVGISNSYLGSGKLKGVSDQAENLASSKALATIAYRLFTDYPEVIKIIQ 234 >gi|313847624|emb|CBY16612.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila psittaci RD1] Length = 433 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 29/241 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV----------FSFLKEKKAMLTTPITI 82 ++ TG V+ D PAS+TK+ TA + F +K TP Sbjct: 38 VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 97 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKF 134 ++ PP + G T+ L N ++ L++ SAND A A+A + + +F Sbjct: 98 KQSGYRSPP-HWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEF 156 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTD-FPQYMHY--FQI 190 ++ +N+ + +G + THF N HG+ HYTTA D+ I+ +K F Q + +++ Sbjct: 157 MKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKEPLFRQVIRTTNYKM 216 Query: 191 KGLEIKGKKYPN-TNWAV--GT---FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + ++ N TN + G+ + A G KTG T +G N+V +A + +S+I + Sbjct: 217 APTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAA 276 Query: 245 G 245 G Sbjct: 277 G 277 >gi|295676949|ref|YP_003605473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1002] gi|295436792|gb|ADG15962.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1002] Length = 404 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+G + + AS+TKLMTA VV + K +T I ++ +Y Sbjct: 155 VIDQNSGETLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQIEVTDEDRDYEKN 210 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ TH Sbjct: 211 TGSRLAVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKAKQLGMNDTH 270 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F N G+ + ++ARD+ + +P + E+ GK+ Y +TN Sbjct: 271 FENPTGLTSM-NVSSARDLVKM-VNAAYQYPLIRKFSTDHSYEVYTGKRTLAYNSTNALV 328 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A + +I V+L + + +R Sbjct: 329 RNPTWDIGL------QKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSR 374 >gi|213023637|ref|ZP_03338084.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 73 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 45/72 (62%) Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G +++ + K +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ Sbjct: 2 GDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGL 61 Query: 159 VQHGHYTTARDM 170 G ++TARDM Sbjct: 62 DAPGQFSTARDM 73 >gi|84498026|ref|ZP_00996823.1| probable penicillin-binding protein dacb1 (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase) (dd-carboxypeptidase) [Janibacter sp. HTCC2649] gi|84381526|gb|EAP97409.1| probable penicillin-binding protein dacb1 (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase) (dd-carboxypeptidase) [Janibacter sp. HTCC2649] Length = 416 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 20/258 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG ++A P PAS K +TA + LK T T+ NA Sbjct: 91 WLIADADTGEILAAKNPHAHLLPASTLKTLTAIHLLPRLKPTAVRTAT--TLESNAEG-- 146 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T T + L++ S ND A +AE L K V +N + LG T Sbjct: 147 -TRVGMVAGGTYTAAQLFQALVMSSGNDAAYGLAE-LNGGLAKTVTELNGLAAELGAHDT 204 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWA 206 + G+ G Y++A D+A+ R P Y+ K +++A Sbjct: 205 VVADPSGLDSPGQYSSAYDLALFG-RAAIANPAYLKLASTKTATFPAATSRSSRSRSSYA 263 Query: 207 VG-------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 +G + G G+K GFT A+ + +A +G ++ I + + R +ASL Sbjct: 264 IGNHNRLLWNYPGTIGVKNGFTKAAHRTFIGAATRGGKTYIVTEMYGTGSSWRP--AASL 321 Query: 260 LSMGFYNKTDRKKINYII 277 L F + K + ++ Sbjct: 322 LDWAFAHGAVAKPVGRLV 339 >gi|331091259|ref|ZP_08340100.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404706|gb|EGG84245.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium 2_1_46FAA] Length = 125 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG +I E D PAS+TK+MT ++F ++ + L +T+S+ A+ S Sbjct: 36 VMEASTGKMIYEKNADEKLPPASVTKVMTMLLIFDAIESGEIKLEDNVTVSEFAASMGGS 95 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + G T T++ LK + V SAND VA Sbjct: 96 QVFLEPGETQTVETMLKCIAVASANDACVA 125 >gi|295098157|emb|CBK87247.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 307 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TK+MTA VV A L + + S P Sbjct: 46 IVDLNTNKVIYASHPDLVRPIASITKVMTAMVVLD------ARLPLDEKLKVDISHTPEM 99 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG+ Sbjct: 100 KGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMKN 159 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF+ G+ H + +TARD+ L K QY Q+ + + N + + Sbjct: 160 THFVEPTGLSIH-NVSTARDLTKLLIASK----QYPLIGQLSTTREEMATFSNPAYTL-P 213 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + + + V++ A + T Sbjct: 214 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYT 266 >gi|270262024|ref|ZP_06190296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia odorifera 4Rx13] gi|270043900|gb|EFA16992.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia odorifera 4Rx13] Length = 277 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 31/265 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKL 59 +R+F +IA+++L I P + A L+ + TG + + D ASLTKL Sbjct: 12 LRRFRAVIALSLLFVIAPAQAAAPLVLHSKAVLVVNQRTGKTLFQKQADRVLPIASLTKL 71 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA V L ++ + + + ++S GS+++ + L + ++ S N Sbjct: 72 MTAMVA---LDSRRPLGNKMRVTAADRDLLKKTHSRLTLGSSLSRRDMLHIALMSSENRA 128 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH-Y 164 A A++ + K FV MN ++++G+ F ++ G+ V H + Y Sbjct: 129 AAALSRNYPGGRKAFVAKMNRKARSIGMKHARFYDSTGLTPRNVASANDLLKMVNHAYRY 188 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 T R + + + Y GL N NW + KTG+T + Sbjct: 189 QTIRRFSTDRQHVVYPGRGQLVYRSSNGL------INNRNWNIQL------QKTGYTNEA 236 Query: 225 GFNIVASAIQGDQSLIAVILGALDR 249 G +V + Q ++ ++LG+ R Sbjct: 237 GHCLVMRTLIKGQPVVIILLGSQQR 261 >gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbaspirillum seropedicae SmR1] gi|300076568|gb|ADJ65967.1| D-alanyl-D-alanine carboxypeptidase protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 16/223 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +LD TG + E D AS+TKLMTA V +L +K+ + + ++++ + Sbjct: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIV---WLDQKQLAMGNRLEVTEDDLDTLKF 204 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++S G++++ + L + ++ S N A A++ F+ MN ++ LG+S TH Sbjct: 205 THSRLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTH 264 Query: 152 FMNAHGVVQHGHYTTARDMAILSWR------IKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F NA G+ + +T R++A L I+ D I ++ +Y N+N Sbjct: 265 FENATGLSPE-NVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQL---QYINSNR 320 Query: 206 AVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGA 246 + + A KTGF SG N+V + D+ +I +LG+ Sbjct: 321 LIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGS 363 >gi|121610552|ref|YP_998359.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Verminephrobacter eiseniae EF01-2] gi|121555192|gb|ABM59341.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Verminephrobacter eiseniae EF01-2] Length = 372 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT ++ + K + +TI+++ + Sbjct: 127 VVDQDTNEVLLSKN-DHAVLPIASLTKLMTGLLI----SQAKLPMDELLTITQDDVDMEK 181 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T+T L L ++ S N A A+ + FV MN ++ LG++ T Sbjct: 182 GSRSRLTVGTTLTRGAMLHLALMASENRAAHALGRTYPGGLAAFVAQMNAQARRLGMTDT 241 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 H+ G+ + ++ARD+A L D P E++ G+K Y NTN Sbjct: 242 HYAEPTGLSSR-NQSSARDLATLVNVTHAD-PLLRELSTSPDYEVEVGRKTLQYNNTNRL 299 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + +R Sbjct: 300 VKNPTWDIGL------QKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSR 346 >gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. JLS] gi|126234329|gb|ABN97729.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. JLS] Length = 264 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 9/214 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D ++G V+A P P PAS K++ A VV L +++ +E Sbjct: 35 WLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNF-----ARANRSHTEVE 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T L L++ S ND A +A+ L ++ V MN + +G +T Sbjct: 90 CSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADML-GGQRAAVAAMNRKAALVGAKST 148 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + G+ G TT D+A++ R ++P + GK N N + Sbjct: 149 RASSPSGLDGPGWESITTPHDLAVM-LRAALNYPLIAQIMRSPTAPFPGKTLTNQNELLS 207 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + G KTGFT + V +A +G++ L V Sbjct: 208 RYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVV 241 >gi|3328163|gb|AAC32488.1| penicillin binding protein PbpA [Streptomyces clavuligerus ATCC 27064] Length = 409 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 41/275 (14%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPW----------- 51 ++ I +A L + F+++ LP TL D+ + + + PW Sbjct: 1 MIAIPLAALLLVIAFVAVQLLRPLPDPVLTLRDSASSTTLGGDRISIPWPKEGQGAVTVA 60 Query: 52 --------NP------ASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNST- 95 P AS K+MTAYV+ K+ IT+ ++ +E + + Sbjct: 61 GSGVYETFGPEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESR 120 Query: 96 ---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK--FVQHMNNTSKNLGLSAT 150 +G T + + LK+L++ S N+I +A KT+ + FV+ MN +K+LG+ T Sbjct: 121 IEGLTEGQTFSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNT 180 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYPNTNWAVG 208 + + G + G +TA D L+ + ++ + + EI G+ Y N + + Sbjct: 181 VYTDPSG-LDKGTVSTAVDQLKLAEAV-MEYDVFRDVVALPNAEIPGHGRIYNNNDRLIL 238 Query: 209 TFLGADGMKTGFTCASGFNIVASA---IQGDQSLI 240 LG G+KTG +G + +A G+ LI Sbjct: 239 AGLGIVGIKTGSNTPAGGTLSWAAYKTFDGEDRLI 273 >gi|289769992|ref|ZP_06529370.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] gi|289700191|gb|EFD67620.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] Length = 542 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFK--KGSTMTLDNALK 109 AS+ K+MTAY+V K I I + A + + ST G +++ AL+ Sbjct: 221 ASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQREALQ 280 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 281 AILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSG-LNNTTVSTAVD 339 Query: 170 MAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 L+ + P + + + KG+ + N N VG G G+KTG T ++ N+ Sbjct: 340 QVKLA-KAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVG-HNGVVGIKTGTTTSALGNL 397 Query: 229 VASAIQGDQSLIAVILGALDRN 250 V +A + I+GA+ R Sbjct: 398 VFAAKKEVGGETRTIVGAVVRQ 419 >gi|90578556|ref|ZP_01234366.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14] gi|90439389|gb|EAS64570.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14] Length = 298 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 ++D +TG + + + ASLTKLMTA V L EK + TP + + Y Sbjct: 41 VIDLSTGKTLYKKNSNVKMPIASLTKLMTAMVTLDAKLPLNEK--LTFTPTDKERMYNTY 98 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + GST++ + + ++ S N A +A + + F++ MN +K+LG++ Sbjct: 99 ----TRIRMGSTLSRGETIHIALMSSENLAAATLAGNYPGGYEAFIKAMNRKAKSLGMTN 154 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 THF+++ G+ H H +TA D+A + R +P+ Y Sbjct: 155 THFVDSSGLDPHNH-STASDVAKMV-RAAYKYPEIRKY 190 >gi|317047420|ref|YP_004115068.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp. At-9b] gi|316949037|gb|ADU68512.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp. At-9b] Length = 317 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 4/138 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + G V+ ++PD ASLTKLMTA VV ML+ I+ + +E Sbjct: 51 IVDLDNGKVLFSSHPDRVRPIASLTKLMTAMVVLDAKLPLDEMLSVDIS---HTAEMRGV 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S K S ++ N L L ++ S N A ++A F++ MN ++ LG++ TH+ Sbjct: 108 FSRVKLNSEISRRNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMTHTHY 167 Query: 153 MNAHGVVQHGHYTTARDM 170 + G+ H + ++A D+ Sbjct: 168 VEPTGLSIH-NVSSAEDL 184 >gi|227505356|ref|ZP_03935405.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC 6940] gi|227198058|gb|EEI78106.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC 6940] Length = 419 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 23/225 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITISKNASE 88 + + D +TG +IA P+ + PAS+ K + A VV + K + T +I +A Sbjct: 109 WMVSDIDTGEIIAMKDPNGRYRPASIIKALLALVVIDEVPLDKKVKATMKDASIEGSAVG 168 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P T++ L+ L++ S ND A A+A L E+ + +N +K LG Sbjct: 169 IGPDGE-------YTVEQLLQGLLMASGNDAAHALAGQLGGDEEAS-KKVNALAKKLGTR 220 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYM--HYFQIKGL-EIKGKKYPN 202 +T + G+ G T+A D++I+ ++R KT F + + + + G E+ G + N Sbjct: 221 STRAASYSGLDSAGMSTSAEDISIIYRAAFRNKT-FARIVDTEHVEFPGWGELPGYELWN 279 Query: 203 TNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 N G FL DG+ KTG+T + V + +G + L AVIL Sbjct: 280 DN---GLFLNDPDGIGGKTGYTEDAHHTFVGALDRGGRRLQAVIL 321 >gi|116619089|ref|YP_819460.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097936|gb|ABJ63087.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 299 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 +++ +T +++E AS++KLMT Y+V KK L T + S N E Sbjct: 48 VMNADTDKILSEKNAHKSLAIASISKLMTGYLVL-----KKLPLGTQVQPSSNTMKIGEE 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 ++ + + D L+ + SAND A+A+ + + ++ KFV+ M TS++ GL+ Sbjct: 103 SNLASVNLDSNQSYSADELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLA 162 Query: 149 ATHFMNAHGV 158 + + NA G+ Sbjct: 163 SAQWYNAAGI 172 >gi|302190851|ref|ZP_07267105.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus iners AB-1] Length = 425 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 31/244 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPP-SNSTFKKGSTMTLDNALK 109 AS++KL+T Y+ + K T + S+ A S+ P SN + G T+ + Sbjct: 88 ASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQ 147 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 +++SAN A+ +A ++ + KKFV M + +S + G+ Sbjct: 148 ATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADS 207 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV------ 207 + +A D+ IL + +FPQ + +I L + NW + Sbjct: 208 NKNADAENELSASDIGILIKHLLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLS 267 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSM 262 DG+KTG T A+G + ++ ++ + ++ VI+GA N + V L Sbjct: 268 QYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYA 327 Query: 263 GFYN 266 FYN Sbjct: 328 YFYN 331 >gi|256786097|ref|ZP_05524528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] Length = 577 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFK--KGSTMTLDNALK 109 AS+ K+MTAY+V K I I + A + + ST G +++ AL+ Sbjct: 256 ASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQREALQ 315 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 316 AILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSG-LNNTTVSTAVD 374 Query: 170 MAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 L+ + P + + + KG+ + N N VG G G+KTG T ++ N+ Sbjct: 375 QVKLA-KAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVG-HNGVVGIKTGTTTSALGNL 432 Query: 229 VASAIQGDQSLIAVILGALDRN 250 V +A + I+GA+ R Sbjct: 433 VFAAKKEVGGETRTIVGAVVRQ 454 >gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu010] gi|307081490|ref|ZP_07490660.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu011] gi|308356859|gb|EFP45710.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu010] gi|308360815|gb|EFP49666.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu011] Length = 307 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 36/250 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 1 MADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV--- 57 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T T++ L L++ S ND A A+A L + +N + LG T Sbjct: 58 --GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDTRV 114 Query: 153 MNAHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKGKK 199 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 115 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDH---PGYELE--- 168 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV---- 255 N N + + GA G KTG+T +G V +A + + L+ V+L TR + Sbjct: 169 --NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLL----HGTRQPIPPWE 222 Query: 256 -SASLLSMGF 264 +A LL GF Sbjct: 223 QAAHLLDYGF 232 >gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] Length = 437 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 23/250 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D TG V+A P + PAS K++ A V L L T IT + ++ Sbjct: 118 WVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELD-----LDTEITATAEDADAE 172 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S KG T ++ L++ S ND A A+A L + V MN + LG T Sbjct: 173 GSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGG-DAAAVSKMNALAVELGALDT 231 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP-------- 201 G+ G ++ D+A++ + P + + +E G K P Sbjct: 232 RTATPSGLDGPGMSSSPYDLAVI-FHTALQNPTFAGLIHTETVEFPGFPKDPTIPDDQDR 290 Query: 202 ------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-K 254 N N + + GA G KTGFT + V +A + + L+ ++G + R + Sbjct: 291 PGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLMGGEAKPIRPWE 350 Query: 255 VSASLLSMGF 264 +A LL G+ Sbjct: 351 QAARLLDYGY 360 >gi|330960895|gb|EGH61155.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 311 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K++M P+ IS+ E Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPMLSELSTTEQKTVTFRKPTYTLG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVHKDNWDIKLTKTGFTNQAGHCLVLLTTMANRPVSVVILDAFGKYT 267 >gi|318080587|ref|ZP_07987919.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF] Length = 409 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 10/201 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------SEYPPSNSTFKKGSTMTLDNA 107 AS+ K+MTAY+V KK IT+ + A S S + G ++ A Sbjct: 83 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 142 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+ + +TA Sbjct: 143 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLNKT-TVSTA 201 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 D L ++ P + ++ ++ GK N N V G+KTG T A+G Sbjct: 202 EDQVKLG-KVAMKDPLFREVVRMPAYVDSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGG 259 Query: 227 NIVASAIQGDQSLIAVILGAL 247 N++ +A + I+GA+ Sbjct: 260 NLLYAATKEVGGTTRTIVGAV 280 >gi|213026275|ref|ZP_03340722.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 76 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTC 222 TARDMA+L + D P + K + PN N W+ T L DGMKTG T Sbjct: 1 TARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWS--TNLHVDGMKTGTTA 58 Query: 223 ASGFNIVASAIQGDQSL 239 +G+N+VASA QGD L Sbjct: 59 GAGYNLVASATQGDMRL 75 >gi|217969517|ref|YP_002354751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp. MZ1T] gi|217506844|gb|ACK53855.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp. MZ1T] Length = 388 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 28/236 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEY 89 + +++ TG V+ E AS+TKLMTA VV + L+ PI I+ + + Sbjct: 139 FYVINQRTGEVLLERNATEVLPIASITKLMTAMVVL----DAGLSLSEPIEINDADIDQL 194 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + S G+T++ + L+L ++ S N A ++A E FV MN ++ LGL Sbjct: 195 KGTGSRLALGTTLSREEMLQLALMSSENRAASSLARHYPGGEAAFVDAMNVKARLLGLWN 254 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFP-QYMHYFQIKGLEIKGKKYPNT 203 T F ++ G + + ++ RD+A + S+ + +F + Y + G + ++ NT Sbjct: 255 TRFHDSTG-LNPANVSSPRDLAKMVAASASYPLIREFSTAHERYVPVHGRML---RFGNT 310 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N W + KTG+ +G +V Q ++ V++ + R TR Sbjct: 311 NSLVRSPEWTISVS------KTGYISEAGRCLVMQTWLHQQPVVMVLMDSSGRYTR 360 >gi|108806608|ref|YP_650524.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua] gi|167399990|ref|ZP_02305508.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108778521|gb|ABG12579.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua] gi|167050698|gb|EDR62106.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 183 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 34/54 (62%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DGMKTG+T +G+N+VASA G LI+V+LGA R S LL+ GF Sbjct: 12 LNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLTWGF 65 >gi|322506467|gb|ADX01921.1| pbpG [Acinetobacter baumannii 1656-2] gi|323516346|gb|ADX90727.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii TCDC-AB0715] Length = 335 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 96 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 151 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 152 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 211 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 212 THYYESTGLDPR-NVSSARDLGILA 235 >gi|213155690|ref|YP_002317735.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter baumannii AB0057] gi|215484932|ref|YP_002327171.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter baumannii AB307-0294] gi|239502064|ref|ZP_04661374.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AB900] gi|301346537|ref|ZP_07227278.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AB056] gi|301512073|ref|ZP_07237310.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AB058] gi|301594839|ref|ZP_07239847.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AB059] gi|213054850|gb|ACJ39752.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter baumannii AB0057] gi|213986566|gb|ACJ56865.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter baumannii AB307-0294] Length = 335 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 96 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 151 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 152 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 211 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 212 THYYESTGLDPR-NVSSARDLGILA 235 >gi|167913835|ref|ZP_02500926.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112] Length = 493 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 39/235 (16%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASE 88 TL D N+ V+ AS+TKLMTA VV + A L I ++ ++ + Sbjct: 123 TLFDRNSRSVVPI---------ASVTKLMTAMVVL----DSNAPLDERIEVTDDDRDQDK 169 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + + S GS ++ D+ L + ++ S N A A++ + FV MN +++LG+ Sbjct: 170 F--TGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMV 227 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 T+F N G+ +H + ++ARD+A + + + + + Y GL + Y +T Sbjct: 228 DTYFENPTGLSKH-NVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL--RTLYYHST 284 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W +G KTG+ SG +V + ++ V+L + R++ Sbjct: 285 NVLLRDNAWNIGV------QKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHS 333 >gi|221067891|ref|ZP_03543996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas testosteroni KF-1] gi|220712914|gb|EED68282.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas testosteroni KF-1] Length = 402 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 ASLTKLMT ++ + + + ITI+++ + S+S + G+T+T + L + Sbjct: 176 ASLTKLMTGLLI----SQARLPMDEMITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLAL 231 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ + +FVQ MN+ + LG+ T ++ G + + ++ARD+A Sbjct: 232 MSSENRAAHALGRTYPGGLSQFVQLMNSKALQLGMKDTRYVEPTG-LSSSNQSSARDLAR 290 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNT-------NWAVGTFLGADGMKTGFT 221 L D P Y G E+ G++ + NT NW +G KTG+ Sbjct: 291 LVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNRLVKSDNWDIGL------QKTGYI 343 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A + LI V L + + +R Sbjct: 344 SEAGRCLVMQAHVAGRKLIMVFLDSAGKFSR 374 >gi|289549537|ref|YP_003470441.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01] gi|289179069|gb|ADC86314.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01] Length = 269 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 36/194 (18%) Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTAR 168 +AE + F MN ++ L + THF N G QH TTA+ Sbjct: 1 MAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADNRLIKPFAPSKYKQQHFSKTTAK 60 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCAS 224 DMA+L+ ++ P+ + ++ + G NTN ++ GADG+KTG T Sbjct: 61 DMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSLPAQADGLAGADGLKTG-TSNH 119 Query: 225 GFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRK------- 271 G+N+ +A Q + + +V+ ++ R ++S ++ F N RK Sbjct: 120 GYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSNIMVRRAFKNYDYRKVLSKGQH 179 Query: 272 ----KINYIIKDFY 281 K+ Y+ KD Y Sbjct: 180 RIQGKMYYVKKDLY 193 >gi|332851496|ref|ZP_08433493.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332866804|ref|ZP_08437208.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] gi|194474667|gb|ACF74453.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7/8 [Acinetobacter baumannii] gi|332729949|gb|EGJ61280.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332734412|gb|EGJ65532.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] Length = 340 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 101 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 156 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 157 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 216 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 217 THYYESTGLDPR-NVSSARDLGILA 240 >gi|169797496|ref|YP_001715289.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AYE] gi|260556388|ref|ZP_05828607.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC 19606] gi|169150423|emb|CAM88320.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii AYE] gi|260410443|gb|EEX03742.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC 19606] Length = 348 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 109 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 164 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 165 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 224 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 225 THYYESTGLDPR-NVSSARDLGILA 248 >gi|296111124|ref|YP_003621505.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU 11154] gi|295832655|gb|ADG40536.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU 11154] Length = 421 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++AE D AS +KL+TAY V + K + +TISK A Sbjct: 41 VIDAGTGQILAEKNSDELGPIASQSKLLTAYAVLKAIDSGKIKWSDKVTISKKADLSKQD 100 Query: 93 NSTF-----KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + F K G +T+ +I S+ND A A+AE L + Q + + ++ L L Sbjct: 101 SHMFSHLAVKAGDRLTVRELYNTMITLSSNDSAFALAEYLTPKKMTTAQALQSWAEELQL 160 Query: 148 SATHFMNAHGVVQHGHY----TTARDMAI 172 + + + N+ G V + T+A D A+ Sbjct: 161 TKSKWYNSAGQVNQDAFENKVTSAPDNAV 189 >gi|193076105|gb|ABO10712.2| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii ATCC 17978] Length = 348 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 109 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 164 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 165 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 224 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 225 THYYESTGLDPR-NVSSARDLGILA 248 >gi|241764854|ref|ZP_04762858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax delafieldii 2AN] gi|241365603|gb|EER60333.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax delafieldii 2AN] Length = 358 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T H + + DH P ASLTKLMT +V + + PITI+++ + Sbjct: 110 VIDQDT-HEVLLSKNDHAVLPIASLTKLMTGLIV----TQAHLPMDEPITITQDDVDTEK 164 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T+T L L ++ S N A A+ + + FV MN+ ++++G++ T Sbjct: 165 GSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLEAFVALMNSKARSIGMTDT 224 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN-- 204 ++ G+ + ++ARD+A+L D P + G E+ K ++ NTN Sbjct: 225 VYVEPTGLSSR-NQSSARDLALLVNVAHGD-PVMREFSTSPGYEVAVGHKTLQFNNTNGL 282 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V + LI V L + + +R Sbjct: 283 VKNPDWNIGL------QKTGYISEAGRCLVMQTHIAGRKLIMVFLDSAGKFSR 329 >gi|184156580|ref|YP_001844919.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|332874936|ref|ZP_08442787.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] gi|183208174|gb|ACC55572.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|332736879|gb|EGJ67855.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] Length = 340 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 101 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 156 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG++A Sbjct: 157 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKARALGMNA 216 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 217 THYYESTGLDPR-NVSSARDLGILA 240 >gi|307729203|ref|YP_003906427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1003] gi|307583738|gb|ADN57136.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1003] Length = 393 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 41/261 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG + + AS+TKLMTA VV + K +T + ++ +Y Sbjct: 144 VVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQLEVTDEDRDYEKN 199 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN ++ LG++ TH Sbjct: 200 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGMTDTH 259 Query: 152 FMNAHGVVQHGHYTTARDMA---------ILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 F N G+ + ++ARD+ L R TD H +++ GK+ Sbjct: 260 FENPTGLTSQ-NVSSARDLVKMVNAAYQYPLIRRFSTD-----HSYEV----YTGKRTLA 309 Query: 200 YPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 Y +TN W +G KTGF +G +V A + ++ V+L + + +R Sbjct: 310 YNSTNALVRNPTWDIGL------QKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSR 363 Query: 253 NKVSASLLSMGFYNKTDRKKI 273 A+ L N D+ +I Sbjct: 364 F-ADATRLRTWLDNGGDQARI 383 >gi|238753350|ref|ZP_04614713.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473] gi|238708303|gb|EEQ00658.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473] Length = 311 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPP 91 ++D T V+ N PDH AS+TKLMTA V + K L I++ E Sbjct: 49 VVDLKTNKVLYSNNPDHVVPIASITKLMTAMVTL----DAKLPLDEVISVDIHQTKELKG 104 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K S + + L L ++ S N A ++A F+ MN +K+LG++ TH Sbjct: 105 VFSRVKVNSEINRKDMLLLALMSSENRAAASLAHHYPGGYSAFITAMNVKAKSLGMTHTH 164 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+ G + + +TARD++ L K QY Q+ K + N ++ + F Sbjct: 165 FVEPTG-LSINNVSTARDLSKLLLATK----QYPLIGQLSTSTEKMATFRNPSYTL-PFR 218 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + ++ + V+L A + T Sbjct: 219 NTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVINNRPVALVVLDAFGKYT 269 >gi|148653230|ref|YP_001280323.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter sp. PRwf-1] gi|148572314|gb|ABQ94373.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter sp. PRwf-1] Length = 344 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 29/259 (11%) Query: 14 SNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 SN F S + + LP T +LD TG + + D AS+TK+MTA VV Sbjct: 78 SNNFATNSTSYYDSLPISTGSRGVIVLDVETGKPLYQKNADVARPIASITKIMTAMVVLD 137 Query: 68 F---LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 ++E+ + K AS S K G M L + ++KS N A ++A Sbjct: 138 AGLDMREEIKLDPEDFVGPKRAS------SRLKSGDRMNRAELLLMALMKSENPAAKSLA 191 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKT 179 + F++ MN +++LG+++ F + G+ + + + D+A + + + Sbjct: 192 RNYPGGYDAFMRAMNAKARSLGMTSAFFGDPTGLDKR-NVASPVDLAKMVQAAGQYEVIR 250 Query: 180 DFPQYMHY-FQIKGLEIKGKKYPNTNWA----VGTF-LGADGMKTGFTCASGFNIVASAI 233 F +Y F + + YP N + GT+ +G KTGF +G +V Sbjct: 251 RFSTTKNYDFYVANYSAGNRPYPANNTSKLVRSGTYPIGIS--KTGFINEAGQCVVMETR 308 Query: 234 QGDQSLIAVILGALDRNTR 252 ++ I VILGA + NTR Sbjct: 309 VNNKPAIIVILGADNSNTR 327 >gi|264677800|ref|YP_003277706.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] gi|262208312|gb|ACY32410.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] Length = 404 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 ASLTKLMT ++ + + + ITI+++ + S+S + G+T+T + L + Sbjct: 178 ASLTKLMTGLLI----SQARLPMDEMITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLAL 233 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ + +FVQ MN+ + LG+ T ++ G + + ++ARD+A Sbjct: 234 MSSENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKDTRYVEPTG-LSSSNQSSARDLAR 292 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNT-------NWAVGTFLGADGMKTGFT 221 L D P Y G E+ G++ + NT NW +G KTG+ Sbjct: 293 LVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNRLVKSDNWDIGL------QKTGYI 345 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A + LI V L + + +R Sbjct: 346 SEAGRCLVMQAHVAGRKLIMVFLDSAGKFSR 376 >gi|25027255|ref|NP_737309.1| putative penicillin-binding protein [Corynebacterium efficiens YS-314] gi|23492536|dbj|BAC17509.1| putative penicillin-binding protein [Corynebacterium efficiens YS-314] Length = 447 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 34/273 (12%) Query: 10 MAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 MA I P ++ E + + D ++G ++A P + PAS+ K + + Sbjct: 114 MANCGVIAPEGFTLPENQTASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQ 173 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L T +T + +A+ S +G T+D L L++ S ND A +A+ L Sbjct: 174 LDP-----TQKVTGTWDAANIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELG 228 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL---SWR-------IK 178 E + +N ++ +G T G+ G T+A DMA++ +W+ + Sbjct: 229 GDEATL-EMVNERAREIGTEDTFVATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVD 287 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQG 235 T+F + + +G ++ N N G F+ DG+ KTG+T + V + + Sbjct: 288 TEFIDFPGWGDNEGFQVW-----NDN---GLFMNDPDGIGGKTGYTDDANHTFVGALNRE 339 Query: 236 DQSLIAVIL------GALDRNTRNKVSASLLSM 262 + + AVIL G R + ASL+++ Sbjct: 340 GRRIGAVILDTTIDKGRPWEQARELIDASLITL 372 >gi|145483651|ref|XP_001427848.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124394931|emb|CAK60450.1| unnamed protein product [Paramecium tetraurelia] Length = 472 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 50/247 (20%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AMLTTPITISKNASEY 89 + + D +I++ + ASLTK+MT Y+ LK+ + ++K ASE Sbjct: 210 FIVYDCLENRIISQRKCNRRMEIASLTKIMTFYITMVILKQLNLKSQDIKVKVTKKASET 269 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL---------------------- 127 + + K +T+ + L L++ S ND A IA+++ Sbjct: 270 IGTTAELKYNDILTIQDLLYGLMLPSGNDAATLIAQAIGTIILFYEADKRLDSKLIDIEQ 329 Query: 128 ----------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 C E F+ MN+ S +G T F HG+ +Y++ D+ Sbjct: 330 MSAEGHYYNVELKSHQCPIE-IFISKMNHYSTLMGQQNTQFACVHGLANEDNYSSCHDIV 388 Query: 172 ILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +LS +K D Q Y Q K ++ NTN + G G+KTG T ++G +A Sbjct: 389 LLSLECMKYDTFQQPLYNQ------KSYEWKNTNKLLDK--GFFGIKTGVTDSAG-PCLA 439 Query: 231 SAIQGDQ 237 SA + ++ Sbjct: 440 SAYRSNE 446 >gi|299531620|ref|ZP_07045025.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44] gi|298720336|gb|EFI61288.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44] Length = 404 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 ASLTKLMT ++ + + + ITI+++ + S+S + G+T+T + L + Sbjct: 178 ASLTKLMTGLLI----SQARLPMDEMITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLAL 233 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ + +FVQ MN+ + LG+ T ++ G + + ++ARD+A Sbjct: 234 MSSENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKDTRYVEPTG-LSSSNQSSARDLAR 292 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNT-------NWAVGTFLGADGMKTGFT 221 L D P Y G E+ G++ + NT NW +G KTG+ Sbjct: 293 LVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNRLVKSDNWDIGL------QKTGYI 345 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A + LI V L + + +R Sbjct: 346 SEAGRCLVMQAHVAGRKLIMVFLDSAGKFSR 376 >gi|325577791|ref|ZP_08148066.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus parainfluenzae ATCC 33392] gi|325160536|gb|EGC72662.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus parainfluenzae ATCC 33392] Length = 291 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P ++ A++ Y + D V+ + P+H AS+TKLMTA V FL+ + Sbjct: 11 LVPAVATAQS-----YIVYDFTHDRVLESSSPNHVQPIASVTKLMTANV---FLENNRNA 62 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 T + +++ K + ++ + LK ++V S N A A++ S + +F+ Sbjct: 63 NCTASITDDDYDYIKGTHTKLPKYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRLQFI 122 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQ 189 Q MN ++ LG+ +T F ++ G + + ++A D+ L+ +IK + Q Sbjct: 123 QKMNEKARELGMRSTRFSDSSG-LSDSNISSAMDLVKLAKYSLNKTQIKNLSNMPSAFIQ 181 Query: 190 IKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 G + K NTN V A KTG+ SG+N+V Sbjct: 182 AGGRSVFVK---NTNKLVREEVFDAAVNKTGYIRESGYNLV 219 >gi|309782592|ref|ZP_07677315.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp. 5_7_47FAA] gi|308918683|gb|EFP64357.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp. 5_7_47FAA] Length = 396 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N G V+ + AS+TKLMTA VV + +L I+ +Y Sbjct: 130 VMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLE----ITDEDRDYERN 185 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ + FV MN ++ LG++ TH Sbjct: 186 TGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKARELGMNDTH 245 Query: 152 FMNAHGVVQHGHYTTARDMA---ILSWRIK-----TDFPQY--------MHYFQIKGLEI 195 +++++G + + ++A+D+A + ++++ T P++ +HY L + Sbjct: 246 YVDSNG-LSSSNVSSAQDLAKIVMAAYKVPLIRQFTTTPEHTVSANGRTLHYVNTNRL-V 303 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G + W +G KTGF +G +V A ++++ V L + TR Sbjct: 304 RGGE-----WDIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 349 >gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Corynebacterium efficiens YS-314] gi|259165806|gb|EEW50360.1| penicillin-binding protein [Corynebacterium efficiens YS-314] Length = 438 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 34/273 (12%) Query: 10 MAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 MA I P ++ E + + D ++G ++A P + PAS+ K + + Sbjct: 105 MANCGVIAPEGFTLPENQTASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQ 164 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L T +T + +A+ S +G T+D L L++ S ND A +A+ L Sbjct: 165 LDP-----TQKVTGTWDAANIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELG 219 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL---SWR-------IK 178 E + +N ++ +G T G+ G T+A DMA++ +W+ + Sbjct: 220 GDEATL-EMVNERAREIGTEDTFVATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVD 278 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQG 235 T+F + + +G ++ N N G F+ DG+ KTG+T + V + + Sbjct: 279 TEFIDFPGWGDNEGFQVW-----NDN---GLFMNDPDGIGGKTGYTDDANHTFVGALNRE 330 Query: 236 DQSLIAVIL------GALDRNTRNKVSASLLSM 262 + + AVIL G R + ASL+++ Sbjct: 331 GRRIGAVILDTTIDKGRPWEQARELIDASLITL 363 >gi|83644147|ref|YP_432582.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] gi|83632190|gb|ABC28157.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] Length = 313 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G + P+ AS++KLMTA VV MLT IT ++ + + Sbjct: 46 VVDVESGVTLFAKNPETVAPIASISKLMTAMVVLDAELPLDEMLT--IT-EEDIDTWKNT 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + G+ + L L ++ S N A+A+ + FV MN+ ++ LG+ T F Sbjct: 103 YSRMRIGAVLPRSELLLLALMSSENRAALALGRTYPGGMTAFVSAMNDKARALGMRNTRF 162 Query: 153 MNAHGVVQHGHYTTARDMAIL-----SWRIKTDF---PQYMHYFQIKGLEIKGK-KYPNT 203 + G+ + +TA D+ + +++ D+ P YM IK E + + ++ NT Sbjct: 163 VEPSGLSME-NVSTASDLVKMVSTASRYKLIRDYTTTPSYM----IKLGETENEMEFRNT 217 Query: 204 NWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N V G + G + KTGF +G +V A G++ + V+L + R T Sbjct: 218 NLLVRQGDW-GVNLSKTGFINEAGRCLVMLANVGERPVAMVLLDSYGRRT 266 >gi|262373941|ref|ZP_06067218.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205] gi|262310952|gb|EEY92039.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205] Length = 353 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 22/240 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ AS+TK+MTA V + + ++ IT+ + + Sbjct: 114 VMDAQTGEVLYSKNSSLAVPIASITKVMTAVVT----ADARLDMSEEITLQQIDFAGAGG 169 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G TM L ++KS N A A+A + FV MN ++ LG+++ Sbjct: 170 KNSSSTLRAGDTMNRAELLLFALMKSENPAAAALARTYPGGRSAFVAAMNAKARQLGMTS 229 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-------GLEIKGKKYPN 202 T + + G+ H + ++ARD+ IL + QY Q L + K N Sbjct: 230 TRYAESTGLDPH-NVSSARDLGIL----VSAASQYGLIRQFSTTPTYDFNLGYRVLKSNN 284 Query: 203 TNWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN V G + + KTG+ +G +V + + V+LGA R + +LL Sbjct: 285 TNALVRNGGW-NINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASTSQARTNDATNLL 343 >gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. MCS] gi|119868044|ref|YP_937996.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. KMS] gi|108769348|gb|ABG08070.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. MCS] gi|119694133|gb|ABL91206.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium sp. KMS] Length = 264 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 9/214 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D ++G V+A P P PAS K++ A VV L +++ +E Sbjct: 35 WLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNF-----ARANRSHTEVE 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T L L++ S ND A +A+ L ++ V MN + +G +T Sbjct: 90 CSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADML-GGQRAAVAAMNRKAALVGAKST 148 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + G+ G TT D+A++ R +P + GK N N + Sbjct: 149 RASSPSGLDGPGWESITTPHDLAVM-LRAALKYPLIAQIMRSPTAPFPGKTLTNQNELLS 207 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + G KTGFT + V +A +G++ L V Sbjct: 208 RYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVV 241 >gi|258510359|ref|YP_003183793.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477085|gb|ACV57404.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 402 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 19/238 (7%) Query: 47 PDHPWNPASLTKLMTAYVVFS-----FLKEKKAMLTTPITISKNASEYPPSNSTFK--KG 99 P P AS+TK+MTAY+V ++ ++ TP + + S K G Sbjct: 74 PQVPVPIASVTKVMTAYLVLQKHPLQLGQQGPSITITPDDVKVYERDKALGQSVVKVAAG 133 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 +T AL+ L++ S N++ +A+ + + FVQ MN T+K LG++ TH+ + G Sbjct: 134 EQITEYQALEGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGYS 193 Query: 160 QHGHYTTARDMAILSWRIKTD-FPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFLGADGM 216 M + + ++ F Q + Q + L + G Y N + V GT +G Sbjct: 194 PASQSDAVDQMKLFALAMQNPVFRQIVGEAQAE-LPVAGLVY-NVDSVVGHGTIIGG--- 248 Query: 217 KTGFTCASG--FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G F A + G++ ++ I+GA+ + A L+ D +K Sbjct: 249 KTGSTLEAGGCFVFAARKVIGNREVL--IIGAVLGQKGPQPLAEALTAAVAMSQDAQK 304 >gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1] gi|300073758|gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 26/189 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMTA VV + + +LT + S+S + G+T++ D+ L + ++ Sbjct: 138 ASVTKLMTALVVVEARQNMEEVLT---VTDDDVDREKHSSSRLRVGATLSRDDMLHIALM 194 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ + FV MN +++LG+ T ++++ G+ + +ARD+A L Sbjct: 195 SSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGLSSQ-NVASARDLAKL 253 Query: 174 S--------WRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 R + P+YM H Q + N W +G KTGF Sbjct: 254 VVAAYNYPIIRQYSTDPKYMVEPSGHALQYNS---SNRLTSNKEWDIGL------QKTGF 304 Query: 221 TCASGFNIV 229 +G +V Sbjct: 305 INEAGHCLV 313 >gi|241663205|ref|YP_002981565.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia pickettii 12D] gi|240865232|gb|ACS62893.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia pickettii 12D] Length = 379 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N G V+ + AS+TKLMTA VV + +L I+ +Y Sbjct: 113 VMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLE----ITDEDRDYERN 168 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ + FV MN ++ LG++ TH Sbjct: 169 TGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKARELGMNDTH 228 Query: 152 FMNAHGVVQHGHYTTARDMA---ILSWRIK-----TDFPQY--------MHYFQIKGLEI 195 +++++G + + ++A+D+A + ++++ T P++ +HY L + Sbjct: 229 YVDSNG-LSSSNVSSAQDLAKIVMAAYKVPLIRQFTTTPEHTVSANGRTLHYVNTNRL-V 286 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G + W +G KTGF +G +V A ++++ V L + TR Sbjct: 287 RGGE-----WDIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 332 >gi|145299285|ref|YP_001142126.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852057|gb|ABO90378.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] Length = 251 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 12/221 (5%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG V++E + AS+TKLMTA VV + LT +T++ + + S Sbjct: 7 TGEVLSERNANRVMPIASITKLMTALVVLDANQRLSETLT--VTMA-DVDRLKGTGSRLA 63 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 GS ++ + L + ++ S N A A+A ++ F++ MN + LG+ +T F ++ G Sbjct: 64 VGSRLSRADMLHIALMSSENRAASALARHYPGGQRAFIEAMNAKASMLGMWSTQFADSTG 123 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWAV--GTFL 211 + + ++A D+A L + +P Y + ++ GK+ Y N+N V G++L Sbjct: 124 LNPR-NVSSAHDLAKLVA-AASAYPLIRQYSATEQRMVRNGKRQLHYLNSNRLVREGSWL 181 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 KTG+ +G +V + + +I V+L A N R Sbjct: 182 -VTLSKTGYIREAGRCLVMATQINREPVILVLLNADTPNAR 221 >gi|300779711|ref|ZP_07089567.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium genitalium ATCC 33030] gi|300533821|gb|EFK54880.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium genitalium ATCC 33030] Length = 434 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 18/225 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG VIA P + PAS+ K++ A V L K +T+S+ ++ Sbjct: 125 WLVADVDTGDVIAMKDPHGRYRPASIIKVLLALVAIDELPLDKK-----VTVSEESAGQE 179 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T+++ L L++ S ND + A+A+ L ++ ++ +N ++ L L T Sbjct: 180 GSAVGIGAGGEYTINDLLHGLLMVSGNDASHALAQELGG-DQATLEKINAKARELNLRDT 238 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR-----------IKTDFPQYMHYFQIKGLEIKGKK 199 + + G+ G T+A DM L++R IKT+ + Y G + Sbjct: 239 YAASYSGLDAPGMSTSAWDMG-LAYRVAYENGTFANIIKTEMYPFPGYIAADGTVFEPFD 297 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N N G KTG+T + V + + + L+AV+L Sbjct: 298 VYNDNHLYLNDPDGIGGKTGYTDDAHHTFVGALDRDGRRLMAVVL 342 >gi|303232329|ref|ZP_07319024.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae PB189-T1-4] gi|302481586|gb|EFL44651.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae PB189-T1-4] Length = 399 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKL 110 PASLTK+MT Y +++ A PI + A + S + F G T + L Sbjct: 170 PASLTKIMTVYTALQYIRNLDA--KAPIDTASFAKLDDENASTAGFVAGEQTTFRDLLYG 227 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +++S + A+++A + +E FV MN ++ +GL THF N G+ + +TA ++ Sbjct: 228 TLLRSGAECAISLAVNTAGSEDAFVAKMNKNAQKMGLRHTHFTNTTGLDDNNLMSTAHEI 287 Query: 171 A 171 Sbjct: 288 G 288 >gi|289649634|ref|ZP_06480977.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi str. 2250] Length = 313 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K++M P+ IS+ E Sbjct: 49 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQSMDEVIPVNISQT-PEMKG 104 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 105 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 164 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 165 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPMLSELSTTEQKTVTFRKPTYTLG-FS 218 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 269 >gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Rv] gi|15842925|ref|NP_337962.1| penicillin-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31794515|ref|NP_857008.1| penicillin-binding protein DacB1 [Mycobacterium bovis AF2122/97] gi|121639258|ref|YP_979482.1| putative penicillin-binding protein dacB1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663194|ref|YP_001284717.1| putative penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Ra] gi|148824535|ref|YP_001289289.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11] gi|167967097|ref|ZP_02549374.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis H37Ra] gi|215405348|ref|ZP_03417529.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis 02_1987] gi|215428820|ref|ZP_03426739.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92] gi|215432297|ref|ZP_03430216.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis EAS054] gi|218755116|ref|ZP_03533912.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM 1503] gi|219559395|ref|ZP_03538471.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17] gi|224991755|ref|YP_002646444.1| putative penicillin-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800375|ref|YP_003033376.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN 1435] gi|254233942|ref|ZP_04927267.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C] gi|254365954|ref|ZP_04981999.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str. Haarlem] gi|254552436|ref|ZP_05142883.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188381|ref|ZP_05765855.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis CPHL_A] gi|260202603|ref|ZP_05770094.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46] gi|260206688|ref|ZP_05774179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85] gi|289445020|ref|ZP_06434764.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46] gi|289449022|ref|ZP_06438766.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis CPHL_A] gi|289555609|ref|ZP_06444819.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN 605] gi|289571561|ref|ZP_06451788.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17] gi|289576056|ref|ZP_06456283.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85] gi|289747151|ref|ZP_06506529.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 02_1987] gi|289752030|ref|ZP_06511408.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92] gi|289755456|ref|ZP_06514834.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis EAS054] gi|289763521|ref|ZP_06522899.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM 1503] gi|294995903|ref|ZP_06801594.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 210] gi|297635986|ref|ZP_06953766.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN 4207] gi|297732983|ref|ZP_06962101.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN R506] gi|313660315|ref|ZP_07817195.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis KZN V2475] gi|2894240|emb|CAA17102.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE) [Mycobacterium tuberculosis H37Rv] gi|13883259|gb|AAK47776.1| penicillin-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31620111|emb|CAD95475.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) [Mycobacterium bovis AF2122/97] gi|121494906|emb|CAL73389.1| Probable penicillin-binding protein dacB1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599471|gb|EAY58575.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C] gi|134151467|gb|EBA43512.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str. Haarlem] gi|148507346|gb|ABQ75155.1| putative penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Ra] gi|148723062|gb|ABR07687.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11] gi|224774870|dbj|BAH27676.1| putative penicillin-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321878|gb|ACT26481.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN 1435] gi|289417939|gb|EFD15179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46] gi|289421980|gb|EFD19181.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis CPHL_A] gi|289440241|gb|EFD22734.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN 605] gi|289540487|gb|EFD45065.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85] gi|289545315|gb|EFD48963.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17] gi|289687679|gb|EFD55167.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 02_1987] gi|289692617|gb|EFD60046.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92] gi|289696043|gb|EFD63472.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis EAS054] gi|289711027|gb|EFD75043.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM 1503] gi|323718003|gb|EGB27186.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis CDC1551A] gi|326905171|gb|EGE52104.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis W-148] gi|328460108|gb|AEB05531.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN 4207] Length = 405 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 37/266 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 97 WLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV- 155 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ L L++ S ND A A+A L + +N + LG T Sbjct: 156 ----GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDT 210 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 211 RVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDH---PGYELE- 266 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + + L+ V+L TR + Sbjct: 267 ----NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLL----HGTRQPIPP 318 Query: 256 ---SASLLSMGFYNKTDRKKINYIIK 278 +A LL GF N +I +I+ Sbjct: 319 WEQAAHLLDYGF-NTPAGTQIGTLIE 343 >gi|325982954|ref|YP_004295356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas sp. AL212] gi|325532473|gb|ADZ27194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas sp. AL212] Length = 275 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 22/225 (9%) Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99 +VI + D AS+TKLMTA V ++T + + + + S G Sbjct: 41 YVIYDKNADKVMPIASITKLMTAIVTLDARLSPNEIITIE---NADVDKLKYTTSRLPVG 97 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 S ++ LKL ++ S N A A+ + + FV MN +K +G+ ++ F+ G+ Sbjct: 98 SKLSRHELLKLSLMSSENRAAAALGRTYPGGTQAFVNAMNIKAKQMGMISSRFVEPTGLS 157 Query: 160 QHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-------WAV 207 + + TARD+A L + + +F + G + +Y N+N W + Sbjct: 158 SN-NVATARDLAKLVAASNRYTVIREFSTASQHSVSPGNKRGQLQYVNSNSLVRSQNWTI 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 D KTG+ +G +V A Q ++ V+L + +NTR Sbjct: 217 ------DVSKTGYLNEAGRCLVMHAKISGQPVVIVLLNSWGKNTR 255 >gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu001] gi|308371314|ref|ZP_07424530.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu003] gi|308372505|ref|ZP_07428899.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu004] gi|308373707|ref|ZP_07433402.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu005] gi|308376077|ref|ZP_07445998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu007] gi|308378277|ref|ZP_07482095.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu009] gi|308213997|gb|EFO73396.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu001] gi|308329169|gb|EFP18020.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu003] gi|308333002|gb|EFP21853.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu004] gi|308336624|gb|EFP25475.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu005] gi|308344359|gb|EFP33210.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu007] gi|308353021|gb|EFP41872.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu009] Length = 392 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 37/266 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 84 WLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV- 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ L L++ S ND A A+A L + +N + LG T Sbjct: 143 ----GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDT 197 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 198 RVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDH---PGYELE- 253 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + + L+ V+L TR + Sbjct: 254 ----NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLL----HGTRQPIPP 305 Query: 256 ---SASLLSMGFYNKTDRKKINYIIK 278 +A LL GF N +I +I+ Sbjct: 306 WEQAAHLLDYGF-NTPAGTQIGTLIE 330 >gi|293397160|ref|ZP_06641434.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582] gi|291420631|gb|EFE93886.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582] Length = 307 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D ++ V+ PD AS+TKLMTA V MLT I E Sbjct: 46 VVDMSSHKVLYARNPDEVVPIASITKLMTAMVTLDAHLPLDEMLTVDI---HQTPEMKGV 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F+ MN +K LG++ TH+ Sbjct: 103 YSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFISAMNAKAKALGMTRTHY 162 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD++ L K QY Q+ + + + N+ + F Sbjct: 163 VEPTGLSIH-NVSTARDLSKLLLATK----QYPLIGQLSTTTERMASFKDPNYTL-PFRN 216 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++S+ V+L A + T Sbjct: 217 TNHLVYNPKWNIQLTKTGFTNQAGHCLAMRTMIGNRSVSLVVLDAFGKYT 266 >gi|291519269|emb|CBK74490.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens 16/4] Length = 376 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 7/149 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L++ T +IA PAS+TK++T + + ++ L + +S A +Y Sbjct: 127 YGILINNKTKDIIASRNATERIVPASMTKVLTVLTAANHITAEQ--LDDKVILSHEAVDY 184 Query: 90 P----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 S S F + +T+ + I+ S D A +A + FV+ MN +K L Sbjct: 185 SYAGGGSTSGFVEDEEVTVKDLFYGTILPSGGDAAAQLAIYVAGDIDSFVKMMNEQAKEL 244 Query: 146 GLSAT-HFMNAHGVVQHGHYTTARDMAIL 173 G+S T HF N G HY+T D+AI+ Sbjct: 245 GISETSHFTNPVGFHNKEHYSTPYDIAII 273 >gi|215447643|ref|ZP_03434395.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85] gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85] gi|289715044|gb|EFD79056.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85] Length = 405 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 37/266 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P PAS+ K++ A + L K++ T + ++ Sbjct: 97 WLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV- 155 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T++ L L++ S ND A A+A L + +N + LG T Sbjct: 156 ----GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDT 210 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKG 197 G+ G T+A D+ + +W+ + T DFP + + G E++ Sbjct: 211 RVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDH---PGYELE- 266 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T +G V +A + + L+ V+L TR + Sbjct: 267 ----NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLL----HGTRQPIPP 318 Query: 256 ---SASLLSMGFYNKTDRKKINYIIK 278 +A LL GF N +I +I+ Sbjct: 319 WEQAAHLLDYGF-NTPAGTQIGTLIE 343 >gi|71736880|ref|YP_274768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557433|gb|AAZ36644.1| penicillin-binding protein 7 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 311 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K++M P+ IS+ E Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPMLSELSTTEQKTVTFRKPTYTLG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLLRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|187735971|ref|YP_001878083.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia muciniphila ATCC BAA-835] gi|187426023|gb|ACD05302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia muciniphila ATCC BAA-835] Length = 323 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 22/233 (9%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 L+ +F F A+ + P Y ++ N+G ++ + + ASL+++ TA V ++ Sbjct: 11 LACVFQF--SAQAQQRPSYIAIEANSGKLLFSSNAEEKRPVASLSQVATAMVALDWVART 68 Query: 73 KAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-- 129 + L T I + + A N + G +TL +AL ++ S N A+ +A + + Sbjct: 69 RLPLDTFIAVPQEAFGLRAGNPMDLQPGDRLTLRDALYSTLLGSDNVSALTVASFVGRDL 128 Query: 130 TEKK--------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT--ARDMAILS-WRIK 178 ++ FV MNN +++L ++ T F HG+ +T A DMA+L + ++ Sbjct: 129 VSRRGGGAPIAAFVAEMNNLARSLRMAKTRFTAPHGLDAGNSVSTSCALDMALLGVYSMQ 188 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASG 225 Y+ + +E++ + T + + + G DG+K G + A+G Sbjct: 189 NPAFCYIVSQASRRIEVQSQTKGRTMYDISNNNRLMSASGVDGIKAGTSRAAG 241 >gi|269128157|ref|YP_003301527.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermomonospora curvata DSM 43183] gi|268313115|gb|ACY99489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermomonospora curvata DSM 43183] Length = 1003 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 92/212 (43%), Gaps = 30/212 (14%) Query: 54 ASLTKLMTAYV--------------VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99 AS+ K+MTAYV F+ E+ A L K E S+ + G Sbjct: 681 ASVAKVMTAYVFLKNHPLEPGEDGPTFTISAEEAARLP----FRKKRGE---SHVDVRAG 733 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 T AL+ L+V SAN+IA +A + FV MN T+K LG+ T + + G Sbjct: 734 QRFTERKALEALMVVSANNIAHELARWDSGSISAFVAKMNATAKELGMHNTRYTDPSG-Y 792 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYF--QIKGLEIKGKKYPNTNWAVGTFLGADGMK 217 G +TA D L R P + ++ E G P N +G + G G K Sbjct: 793 DSGTVSTAADQVKL-LRAAMRIPAFAEIVAERVYDPEDGGPVRPAGNVLLGNY-GIVGGK 850 Query: 218 TGFTCASGFNIVASA---IQG-DQSLIAVILG 245 TG+T A+G N V +A + G D +I ++G Sbjct: 851 TGYTDAAGGNFVFAARRQVAGVDTLMIGAVMG 882 >gi|260598596|ref|YP_003211167.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032] gi|260217773|emb|CBA32213.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032] Length = 269 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ ++PD AS+TK+MTA VV MLT I+ + E Sbjct: 8 IVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDASLPLDEMLTVDIS---HTPEMKGI 64 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N L L ++ S N A ++A F++ MN +K LG+ T F Sbjct: 65 YSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMRNTRF 124 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + + N + + F Sbjct: 125 VEPTGLSIH-NVSTARDLTKLLIATK----QYPLIGQLSTTREEMATFANPAYTL-PFRN 178 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G ++ + ++ + V++ A + T Sbjct: 179 TNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYT 228 >gi|239988485|ref|ZP_04709149.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 11379] Length = 384 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 21/191 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNST--FKKGSTMTLDNALK 109 AS+ K+MTAYV+ K IT+ + A + P ST KG +T L+ Sbjct: 59 ASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQ 118 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N+ A +A +E F+ MN+ +K +G++ + + + G+ + +TA D Sbjct: 119 LLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGL-EKTTVSTATD 177 Query: 170 MAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L+ +R D P+ +I+G I GK Y N N + G G+KTG + Sbjct: 178 QLKLAQAVMRNDVFREIVDMPE----VEIEG--IDGKIYNNNNLLL--QPGVSGIKTGSS 229 Query: 222 CASGFNIVASA 232 +G N++ SA Sbjct: 230 TPAGGNLLWSA 240 >gi|289624340|ref|ZP_06457294.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487139|ref|ZP_07005189.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158382|gb|EFH99452.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868676|gb|EGH03385.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330891159|gb|EGH23820.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. mori str. 301020] gi|330985252|gb|EGH83355.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008609|gb|EGH88665.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 311 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K++M P+ IS+ E Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPMLSELSTTEQKTVTFRKPTYTLG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] Length = 431 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 41/275 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK---------EKKAMLTTPIT 81 + + D +TG V+A P + PAS K++ A V S L E A+ + + Sbjct: 109 WVVADIDTGDVLAAKDPHGRYRPASTIKMLLALVALSELDLDKTVTATAEDAAVEGSAVG 168 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 I KN +Y +N +G L++ S ND A +A L + V MN+ Sbjct: 169 IGKNG-QY--TNRQLMQG-----------LVMASGNDAAHLLARQLGG-DAATVDKMNHL 213 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----------SWRIKTDFPQYMHYFQIK 191 + LG T G+ G ++ D+A++ + I T+ Q+ + + Sbjct: 214 ADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHTAMKNPTFAELISTETVQFPGFPKDP 273 Query: 192 GLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + P N N + + GA G KTGFT + V A + L+ ++GA Sbjct: 274 AIPDDQDRPPFALANDNQLLYNYDGALGGKTGFTDDARHTYVGGADHDGRRLMVTLMGAE 333 Query: 248 DRNTRN-KVSASLLSMGFYNKTDRKKINYIIKDFY 281 + R + +A LL GF DR ++D Y Sbjct: 334 AQPIRPWEQAARLLDYGF--ALDRDAQVGSLEDLY 366 >gi|253997956|ref|YP_003050019.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus sp. SIP3-4] gi|253984635|gb|ACT49492.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus sp. SIP3-4] Length = 330 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 24/233 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D AS+TKLMTA V+ +LT + + Sbjct: 88 IVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDAHLPMDELLTIN---EADVDTLKGT 144 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+T+T L L ++ S N A A+ + F++ MN + LG++ + F Sbjct: 145 SSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMNAKASMLGMAHSQF 204 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYP--------- 201 ++ G + + +TA D+ + R +P+ E+ G + P Sbjct: 205 VDPTG-LNSANISTAEDLVKM-VRAAYQYPEIRQVSTSASQEVPVYGLRNPINFVNTNVL 262 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N++W +G KTGF +G +V A Q +I V+L + + +R Sbjct: 263 VRNSDWVIGLS------KTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSR 309 >gi|228979140|ref|ZP_04139486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228780588|gb|EEM28809.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] Length = 194 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 12/139 (8%) Query: 138 MNNTSKNLGL-SATHFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 MN +K L L + F+N+ G+ TTA D A L+ R+ DFP ++ ++ Sbjct: 1 MNKKAKELQLLQPSPFLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSY 60 Query: 194 EI--KGKKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K + NTN + + G DG++T F+ ++ V++A GD LI+VIL Sbjct: 61 QFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILD 120 Query: 246 ALDRNTRNKVSASLLSMGF 264 A + N + LL GF Sbjct: 121 ADEENISFIETKKLLQYGF 139 >gi|325124211|gb|ADY83734.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter calcoaceticus PHEA-2] Length = 335 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TK+MTA V + + ++ IT+ + + Sbjct: 96 VMDAQTGEVLYSKNTNASVPIASITKVMTAVVT----ADARLNMSEEITLEQIDFAGAGG 151 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG+S+ Sbjct: 152 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARALGMSS 211 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 TH+ + G+ + ++ARD+ IL Sbjct: 212 THYYESTGLDPR-NVSSARDLGIL 234 >gi|209522105|ref|ZP_03270754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. H160] gi|209497459|gb|EDZ97665.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. H160] Length = 396 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+G + + AS+TKLMTA VV + K +T I ++ +Y Sbjct: 147 VIDQNSGESLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMTDQIEVTDEDRDYEKN 202 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN +K LG++ TH Sbjct: 203 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKAKQLGMNDTH 262 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F N G+ + ++ARD+ + +P + ++ GK+ Y +TN Sbjct: 263 FENPTGLTSM-NVSSARDLVKM-VNAAYQYPLIRKFSTDHSYDVYTGKRTLAYNSTNALV 320 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W +G KTGF +G +V A + +I V+L + + +R A+ L Sbjct: 321 RNPTWDIGL------QKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSRF-ADATRL 373 Query: 261 SMGFYNKTDRKKI 273 N D+ +I Sbjct: 374 RTWLDNGGDQPRI 386 >gi|313200023|ref|YP_004038681.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Methylovorus sp. MP688] gi|312439339|gb|ADQ83445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus sp. MP688] Length = 330 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 24/233 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG V+ D AS+TKLMTA V+ +LT + + Sbjct: 88 IVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDAHLPMDELLTIN---EADVDTLKGT 144 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+T+T L L ++ S N A A+ + F++ MN + LG++ + F Sbjct: 145 SSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMNAKASMLGMAHSQF 204 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYP--------- 201 ++ G + + +TA D+ + R +P+ E+ G + P Sbjct: 205 VDPTG-LNSANISTAEDLVKM-VRAAYQYPEIRQVSTSASQEVPVYGLRNPINFVNTNVL 262 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N++W +G KTGF +G +V A Q +I V+L + + +R Sbjct: 263 VRNSDWVIGLS------KTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSR 309 >gi|296103782|ref|YP_003613928.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058241|gb|ADF62979.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 307 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TKLMTA VV A L + + S P Sbjct: 46 IVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD------AHLPLDEKLKVDISHTPEM 99 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 100 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMNN 159 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ L K QY Q+ + + N + + Sbjct: 160 TRFVEPTGLSIH-NVSTARDLTKLLIASK----QYPLIGQLSTTREEMATFANPAYTL-P 213 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + + + V++ A + T Sbjct: 214 FRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYT 266 >gi|187929017|ref|YP_001899504.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia pickettii 12J] gi|187725907|gb|ACD27072.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia pickettii 12J] Length = 396 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N G V+ + AS+TKLMTA VV + +L I+ +Y Sbjct: 130 VMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLE----ITDEDRDYERN 185 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ + FV MN + LG++ TH Sbjct: 186 TGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAHELGMNDTH 245 Query: 152 FMNAHGVVQHGHYTTARDMA---ILSWRIK-----TDFPQY--------MHYFQIKGLEI 195 +++++G + + ++A+D+A I ++++ T P++ +HY L + Sbjct: 246 YVDSNG-LSSSNVSSAQDLAKIVIAAYKVPLIRQFTTTPEHTVSANGRTLHYVNTNRL-V 303 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G + W +G KTGF +G +V A ++++ V L + TR Sbjct: 304 RGGE-----WDIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 349 >gi|146312376|ref|YP_001177450.1| D-alanyl-D-alanine endopeptidase [Enterobacter sp. 638] gi|145319252|gb|ABP61399.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 315 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TKLMTA VV A L + + S P Sbjct: 45 IVDLNTNKVIYSSHPDLVRPIASITKLMTAMVVLD------ARLPLDEKLKVDISHTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K+LG+ Sbjct: 99 KGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKSLGMKN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+ G+ H + +TARD+ + K QY Q+ + + N + + Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTQMLIASK----QYPLIGQLSTTREEMATFANPAYTL-P 212 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + + + V++ A + T Sbjct: 213 FRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYT 265 >gi|26990499|ref|NP_745924.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida KT2440] gi|24985474|gb|AAN69388.1|AE016575_6 D-alanyl-D-alanine-endopeptidase [Pseudomonas putida KT2440] Length = 308 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ + ++ D AS+TKLMTA VV MLT +TI+ N E Sbjct: 48 LIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A + F++ MN +++LG++ T + Sbjct: 105 YSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+A L + +Y ++ K + N+ +G F Sbjct: 165 VEPTGLSTQ-NVSTARDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 268 >gi|167033128|ref|YP_001668359.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida GB-1] gi|166859616|gb|ABY98023.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas putida GB-1] Length = 308 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ + ++ D AS+TKLMTA VV MLT +TI+ N E Sbjct: 48 LIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A + F++ MN +++LG++ T + Sbjct: 105 YSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+A L + +Y ++ K + N+ +G F Sbjct: 165 VEPTGLSTQ-NVSTARDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 268 >gi|294637382|ref|ZP_06715676.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685] gi|291089460|gb|EFE22021.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685] Length = 309 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 12/226 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TKLMTA V + ++ I ++ E Sbjct: 49 VMDLNTHQVIYASHPDVQVPIASITKLMTAMVALDAHPDLNEVIAVDI---RHTKELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS T L L ++ S N A +A F++ MN ++ LG++ TH+ Sbjct: 106 FSRVRVGSEQTRREMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMTRTHY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + G+ + ++ARD+ L K +P + + + + + Y T Sbjct: 166 VEPTGLSPL-NVSSARDLVKLLQATK-RYPLISELSTTETQSVTFRHPTYTETFNNTNHL 223 Query: 211 LGADG-----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L D KTGFT +G + + G + + V+L A + T Sbjct: 224 LRNDKWDIALTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYT 269 >gi|329941806|ref|ZP_08291071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] gi|329299523|gb|EGG43423.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] Length = 398 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 19/236 (8%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 ++ E + L + + D ++G V+A + P PAS K + A V L A T Sbjct: 69 AVPEVSAL-SWLVADADSGDVLAAHDAHRPLPPASTLKALFALTVLPALP-ADARHTVDE 126 Query: 81 TISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 T + P +S +G T T+ + + + + S ND AV + ++ + + M Sbjct: 127 TELRGIG---PGSSLVGVAEGLTYTVADLWRGVFLSSGND-AVHVLAAMNGGLEATTRRM 182 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 + ++ LG TH ++ G + G ++A D+A+ R P + Y G Sbjct: 183 RDKARALGARDTHVLSPDGYDRPGQVSSAYDLAVFG-RAGLHDPDFARYCATPEAYFPGY 241 Query: 199 KYP----NTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 P NTN V + G G+K G+T +G ++A+A +G ++L+ +L Sbjct: 242 GQPYGIQNTNRLLTGADGVAPYPGLIGVKNGYTSGAGNTLIAAARRGGRTLVVTVL 297 >gi|320324554|gb|EFW80631.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea str. B076] gi|320328927|gb|EFW84926.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea str. race 4] Length = 311 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K++M P+ IS+ E Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPMLSELSTTEQKMVTFRKPTYTLG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|254384371|ref|ZP_04999713.1| penicillin binding protein PbpA [Streptomyces sp. Mg1] gi|194343258|gb|EDX24224.1| penicillin binding protein PbpA [Streptomyces sp. Mg1] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-----SKNASEYPPSNSTFKKGSTMTLDNAL 108 AS+ K+MTAYV+ + I I + ASE+ G+ + + L Sbjct: 96 ASVAKVMTAYVILKSHPLRGGDPGPQIEIDAKAVADGASEHESRVEGLVAGTKFSQQDML 155 Query: 109 KLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K+L++ SAN++A +A +S +E FV+ MN ++ LG++ T + + G+ T Sbjct: 156 KMLMIPSANNVARLLARWDSGTDSEAAFVEKMNAAARELGMTNTTYTDPSGLDAATVSTA 215 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTC 222 A + + +K + + + EIKG P NT V L G+KTG + Sbjct: 216 ADQLKLADAVMKEE--AFRAVVALPSAEIKGLSTPLYNNNTLLTV-NGLSIRGIKTGSST 272 Query: 223 ASGFNIVASAIQ--GDQSLIAVILGAL 247 +G ++ +A + GD++ +ILG L Sbjct: 273 PAGGALMWAAYKSVGDET--PLILGTL 297 >gi|330979275|gb|EGH78054.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 266 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K+ M P+ IS+ E Sbjct: 2 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDEVIPVNISQT-PEMKG 57 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 58 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 117 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 118 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG-FS 171 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 172 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 222 >gi|326563690|gb|EGE13942.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 103P14B1] gi|326566458|gb|EGE16608.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC1] gi|326573300|gb|EGE23268.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 101P30B1] gi|326575803|gb|EGE25726.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis CO72] Length = 386 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 26/235 (11%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEYPP 91 D G +I D + AS++K+MTA V+ ++E+ ++ + + +K AS Sbjct: 146 DLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMREEITLIASDLIGAKQAS---- 201 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + K G MT +++++S N A A+A + F+ MN + +LG+ T Sbjct: 202 --TRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQTK 259 Query: 152 FMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHYFQIKGLEIKGKKY 200 F ++ G+ + ++A D+ I+ S R + P Y Y G + K Sbjct: 260 FSDSSGLDPR-NMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIYKG 318 Query: 201 PNTNWAV--GTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTN V G + +G KTG+ +G+++V ++ I V+LGA + R Sbjct: 319 NNTNRLVREGAYPIGVQ--KTGYIREAGYSVVMETNINNRPAIVVLLGASNSANR 371 >gi|148547200|ref|YP_001267302.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida F1] gi|148511258|gb|ABQ78118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas putida F1] Length = 308 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ + ++ D AS+TKLMTA VV MLT +TI+ N E Sbjct: 48 LIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A + F++ MN +++LG++ T + Sbjct: 105 YSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+A L + +Y ++ K + N+ +G F Sbjct: 165 VEPTGLSTQ-NVSTARDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 268 >gi|330900670|gb|EGH32089.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 266 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K+ M P+ IS+ E Sbjct: 2 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDEVIPVNISQT-PEMKG 57 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 58 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 117 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 118 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG-FS 171 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 172 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 222 >gi|326560224|gb|EGE10612.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 7169] gi|326562868|gb|EGE13155.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 46P47B1] gi|326570266|gb|EGE20311.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC8] gi|326571002|gb|EGE21026.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC7] gi|326576883|gb|EGE26789.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis O35E] Length = 386 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 22/235 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 + D G +I D + AS++K+MTA V+ ++E+ ++ + + +K AS Sbjct: 144 VYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMREEITLIASDLIGAKQAS-- 201 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + K G MT +++++S N A A+A + F+ MN + +LG+ Sbjct: 202 ----TRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQ 257 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHYFQIKGLEIKGK 198 T F ++ G+ + ++A D+ I+ S R + P Y Y G + Sbjct: 258 TKFSDSSGLDPR-NMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIY 316 Query: 199 KYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K NTN V G+ KTG+ +G+++V ++ I V+LGA + R Sbjct: 317 KGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANR 371 >gi|239942020|ref|ZP_04693957.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 822 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 21/191 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNST--FKKGSTMTLDNALK 109 AS+ K+MTAYV+ K IT+ + A + P ST KG +T L+ Sbjct: 497 ASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQ 556 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N+ A +A +E F+ MN+ +K +G++ + + + G+ + +TA D Sbjct: 557 LLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGL-EKTTVSTATD 615 Query: 170 MAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L+ +R D P+ +I+G I GK Y N N + G G+KTG + Sbjct: 616 QLKLAQAVMRNDVFREIVDMPE----VEIEG--IDGKIYNNNNLLL--QPGVSGIKTGSS 667 Query: 222 CASGFNIVASA 232 +G N++ SA Sbjct: 668 TPAGGNLLWSA 678 >gi|330953321|gb|EGH53581.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae Cit 7] Length = 311 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA VV L K+ M P+ IS+ E Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|294815047|ref|ZP_06773690.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC 27064] gi|294327646|gb|EFG09289.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC 27064] Length = 698 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 11/184 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNST----FKKGSTMTLDNAL 108 AS K+MTAYV+ K+ IT+ ++ +E + + +G T + + L Sbjct: 366 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 425 Query: 109 KLLIVKSANDIAVAIAESLCKTEKK--FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K+L++ S N+I +A KT+ + FV+ MN +K+LG+ T + + G + G +T Sbjct: 426 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSG-LDKGTVST 484 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYPNTNWAVGTFLGADGMKTGFTCAS 224 A D L+ + ++ + + EI G+ Y N + + LG G+KTG + Sbjct: 485 AVDQLKLAEAV-MEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSNTPA 543 Query: 225 GFNI 228 G + Sbjct: 544 GGTL 547 >gi|254387565|ref|ZP_05002804.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|326443414|ref|ZP_08218148.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|197701291|gb|EDY47103.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 693 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 11/184 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNST----FKKGSTMTLDNAL 108 AS K+MTAYV+ K+ IT+ ++ +E + + +G T + + L Sbjct: 361 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 420 Query: 109 KLLIVKSANDIAVAIAESLCKTEKK--FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K+L++ S N+I +A KT+ + FV+ MN +K+LG+ T + + G + G +T Sbjct: 421 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSG-LDKGTVST 479 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYPNTNWAVGTFLGADGMKTGFTCAS 224 A D L+ + ++ + + EI G+ Y N + + LG G+KTG + Sbjct: 480 AVDQLKLAEAV-MEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSNTPA 538 Query: 225 GFNI 228 G + Sbjct: 539 GGTL 542 >gi|226941642|ref|YP_002796716.1| PbpG [Laribacter hongkongensis HLHK9] gi|226716569|gb|ACO75707.1| PbpG [Laribacter hongkongensis HLHK9] Length = 286 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 30/227 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 +++ TG V+ D + AS+TKLMTA V+ + L ITIS+ Sbjct: 46 VVNAQTGEVLFGKNTDRMMSIASITKLMTAMVML----DSGQPLDELITISEAEIDRLKN 101 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++S GS ++ L L ++ S N A ++A + FV MN ++ LG+ +T Sbjct: 102 TSSRLAVGSVLSRREMLLLALMSSENRAAASLARTSPGGTSAFVSRMNQKARQLGMHSTR 161 Query: 152 FMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTN 204 F + G+ + +TA D+A + ++R +P ++ + +Y N+N Sbjct: 162 FYDPTGLDSR-NTSTAEDLARMVAAAYR----YPLIREDTTTTDQQVYARNRMLQYRNSN 216 Query: 205 -------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 W +G KTG+T +G +V A G LI V L Sbjct: 217 ALVREGQWQIGLS------KTGYTQEAGRCLVMMATVGSTPLIMVFL 257 >gi|266625856|ref|ZP_06118791.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288862244|gb|EFC94542.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 239 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 23/158 (14%) Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 F + MN +K LG + ++F+N G+ HYTTA DMA+++ R ++P+ + + Sbjct: 1 FAKLMNKKAKELGCTGSNFVNPSGLNDPDHYTTAYDMALIA-RSALNYPEIVEIMGTRVY 59 Query: 194 EI-KGKKYP---------------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +I KK P ++ + F G KTGFT + +V A + D Sbjct: 60 KIPPSKKAPEGQTISPGHKMLKKNDSAYDPRVF----GGKTGFTSLADNTLVTYAKKDDM 115 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 +LI+VIL T + LL GF +K +Y Sbjct: 116 TLISVILNG--HQTHYTDTKKLLDFGFSQFESKKLADY 151 >gi|299771873|ref|YP_003733899.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. DR1] gi|298701961|gb|ADI92526.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter sp. DR1] Length = 335 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ + AS+TKLMTA V + L + ++ I + + Sbjct: 96 VMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEIMLEQIDFA--GANGKN 153 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ST + G M L ++KS N A A+A + FV MN ++ LG++ATH Sbjct: 154 SSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARALGMNATH 213 Query: 152 FMNAHGVVQHGHYTTARDMAILS 174 + + G+ + ++ARD+ IL+ Sbjct: 214 YYESTGLDPR-NVSSARDLGILA 235 >gi|238028296|ref|YP_002912527.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] gi|237877490|gb|ACR29823.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] Length = 376 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 34/231 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEY 89 ++D +G V+ E + + AS++KLMTA V ++ LT + +S ++ ++ Sbjct: 141 VIDERSGTVLLERHANRIKPIASVSKLMTAVVSL----DRHVPLTHRLRVSVSDRDTIKF 196 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + S K GS ++ + L + ++ S N A A++ F+ MN ++ LG++ Sbjct: 197 --TGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNRKARMLGMTN 254 Query: 150 THFMNAHGVVQHGHYTTARDMA-ILSWRIK--------TDFPQYMHYFQIKGLEIKGK-K 199 T F+NA G+ + +TARD+A +LS + TD Q +H +G+ Sbjct: 255 TRFVNATGLSPQ-NVSTARDLARLLSAAARYPAIRTFSTDHAQVVH-------PGRGQLS 306 Query: 200 YPNTNWAVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 Y N+N V G D KTGF +G +V G + + V+L A Sbjct: 307 YVNSNALV---RGGDTRIRLQKTGFINEAGHCLVIRYRIGARPVDVVLLDA 354 >gi|289805534|ref|ZP_06536163.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 140 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 49 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106 Query: 91 PSNSTFKKGSTMTLDNALKLLI 112 N FK S M L +++ + Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPV 128 >gi|323526624|ref|YP_004228777.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1001] gi|323383626|gb|ADX55717.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia sp. CCGE1001] Length = 391 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 25/253 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D NTG + + AS+TKLMTA VV + K ++ + ++ +Y Sbjct: 142 VVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVL----DSKEPMSDQLEVTDEDRDYEKN 197 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S GS ++ ++ L + ++ S N A A++ F+ MN ++ LG++ TH Sbjct: 198 TGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGMTDTH 257 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN--- 204 F N G+ + ++ARD+ + +P + E+ GK+ Y +TN Sbjct: 258 FENPTGLTSQ-NVSSARDLVKM-VNAAYQYPLIRKFSTDHSYEVYTGKRTLAYNSTNALV 315 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 W +G KTGF +G +V A + ++ V+L + + +R A+ L Sbjct: 316 RNPTWDIGL------QKTGFINEAGECLVMQANIHGRPMVMVLLDSSGKYSRF-ADATRL 368 Query: 261 SMGFYNKTDRKKI 273 N D+ +I Sbjct: 369 RTWLDNGGDQPRI 381 >gi|301154684|emb|CBW14147.1| D-alanyl-D-alanine endopeptidase [Haemophilus parainfluenzae T3T1] Length = 291 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 19/221 (8%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P ++ A++ Y + D V+ + P+H AS+TKLMTA V FL+ + Sbjct: 11 LVPAMATAQS-----YVVYDFTHDRVLESSSPNHVQPIASVTKLMTANV---FLENNRNT 62 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 T + +++ K + ++ + LK ++V S N A A++ S + +F+ Sbjct: 63 NCTASITDDDYDYIKGTHTKLPKYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRLQFI 122 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQ 189 Q MN ++ LG+ +T F ++ G + + ++ D+ L+ +IK + Q Sbjct: 123 QKMNEKARELGMRSTRFSDSSG-LSDSNISSVMDLVKLAKYSLNKAQIKNLSNMPSAFIQ 181 Query: 190 IKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 G + K NTN V A KTG+ SG+N+V Sbjct: 182 AGGRSVFVK---NTNKLVREEVFDAAINKTGYIRESGYNLV 219 >gi|302186370|ref|ZP_07263043.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae 642] Length = 311 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + PD AS+TKLMTA VV L K+ M I N S+ P Sbjct: 47 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDE---VIPVNISQTPEM 100 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + GS M + L + ++ S N A ++A S F+ MN +K LG+ Sbjct: 101 KGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKH 160 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++ G+ + + +TARD+ L + +Y ++ E K + + +G Sbjct: 161 TAYVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG- 214 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V ++ + VIL A + T Sbjct: 215 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|291445469|ref|ZP_06584859.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291348416|gb|EFE75320.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 838 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 21/191 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNST--FKKGSTMTLDNALK 109 AS+ K+MTAYV+ K IT+ + A + P ST KG +T L+ Sbjct: 513 ASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQ 572 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N+ A +A +E F+ MN+ +K +G++ + + + G+ + +TA D Sbjct: 573 LLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGL-EKTTVSTATD 631 Query: 170 MAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L+ +R D P+ +I+G I GK Y N N + G G+KTG + Sbjct: 632 QLKLAQAVMRNDVFREIVDMPE----VEIEG--IDGKIYNNNNLLL--QPGVSGIKTGSS 683 Query: 222 CASGFNIVASA 232 +G N++ SA Sbjct: 684 TPAGGNLLWSA 694 >gi|213025793|ref|ZP_03340240.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 129 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 38 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 95 Query: 91 PSNSTFKKGSTMTLDNALKLLI 112 N FK S M L +++ + Sbjct: 96 TGNPVFKGSSLMFLKPGMQVPV 117 >gi|161486731|ref|YP_235491.2| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae B728a] Length = 313 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + PD AS+TKLMTA VV L K+ M I N S+ P Sbjct: 49 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDE---VIPVNISQTPEM 102 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + GS M + L + ++ S N A ++A S F+ MN +K LG+ Sbjct: 103 KGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKH 162 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++ G+ + + +TARD+ L + +Y ++ E K + + +G Sbjct: 163 TAYVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG- 216 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 269 >gi|295398159|ref|ZP_06808208.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] gi|294973678|gb|EFG49456.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] Length = 469 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 48/268 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D+ +G ++ + ASLTKL+ +VV+ + + + +S+ SE Sbjct: 69 VIDSESGQILYDQNGADLHGIASLTKLIALFVVYDEIAAGNLSFDSKVPVSEAVSELSVA 128 Query: 92 ---SNSTFKKGSTM-TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 SN ++ + T+D + ++ S N VA+AE + +E+ FV+ M++ LG+ Sbjct: 129 AGLSNVPLEESTDYYTVDALIDAAVIGSGNAAVVALAEYIAGSEQSFVEMMDDKLTELGI 188 Query: 148 SATHFMNAHGVVQHGHYTT----------------ARDMAILSWRIKTDFPQYMHY---- 187 A G+ TT ARD+ ++ I ++P + Sbjct: 189 KDFELYTASGLAGSWLTTTDGSASPYSIDQENMMQARDILFVAREIVNEYPDVLERSNVT 248 Query: 188 ---FQIKGLE----------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN-IVASAI 233 FQ+ E + G Y + + G+KTG +G I+ S I Sbjct: 249 SKEFQVSDTETYTLESTNLFLPGNAYERDDVS--------GLKTGTESIAGRCIIIMSQI 300 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLS 261 G + ++ V LGA + R + +LL+ Sbjct: 301 DG-RDIMLVTLGAETEDERYVNTGTLLT 327 >gi|313498269|gb|ADR59635.1| PbpG [Pseudomonas putida BIRD-1] Length = 312 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D N+ + ++ D AS+TKLMTA VV MLT +TI+ N E Sbjct: 52 LIDLNSNKELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PEMKGV 108 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A + F++ MN +++LG++ T + Sbjct: 109 YSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRY 168 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+A L + +Y ++ K + N+ +G F Sbjct: 169 VEPTGLSTQ-NVSTARDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 222 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 223 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 272 >gi|222159812|gb|ACM47285.1| D,D-carboxypeptidase VanYD [Enterococcus faecium] Length = 363 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 32/219 (14%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++TA V + ++ M + I + + S S + KG T+T+ L L Sbjct: 133 PASTAKMITALTVLEYCSPEEEMRVGAEIEMIHSDS----STAWLMKGDTLTVRQLLIAL 188 Query: 112 IVKSANDIAVAIAESLCKTE------------KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 ++ S ND A +A + KT K F+ +N ++ LG++ ++F+ G Sbjct: 189 MLPSGNDAAYTLAVNTGKTIAGDNSLSNQQAIKIFMDKVNEKARELGVTDSNFVVPDGYD 248 Query: 160 QHGHYTTARDMAILSWRI------------KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 G YTTA D+AI++ T + ++ + ++ PN+ + Sbjct: 249 AEGQYTTAYDLAIIAKACLENPIISEIVASNTSYEKWPNGREVTYNNSNELLDPNSPYYR 308 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G+KTG + G +V++A+ ++ I V +G+ Sbjct: 309 PEVI---GLKTGTSSLGGACVVSAAVIDGETYICVAMGS 344 >gi|146181846|ref|XP_001023475.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|146144034|gb|EAS03230.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 564 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 59/279 (21%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE--KKAMLTTPITISKNASE 88 + L D ++G I + ASLTK+MT Y V F ++ +K M + +S AS+ Sbjct: 269 WALFDGSSGKFIDGKCVHNQREVASLTKIMTCYTVIEFFEQILQKDMKRVFVRVSSRASQ 328 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-------------------- 128 +++ K +++ + L L++ S ND AV +AE++ Sbjct: 329 TNGTSARLKYNMIISIWDLLYGLMLPSGNDSAVCLAENVGSLMYLYYVKQDNEILQDEFI 388 Query: 129 --------KTE---------KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 K E ++F+ MN + N L T++ N HG+ + ++A D+A Sbjct: 389 YDEQLLHKKLELDSTPNTGMQRFLVQMNINAVNFELINTNYSNPHGLKNPLNKSSAYDVA 448 Query: 172 ILSWR------IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFL--GADGMKTGF 220 +S K +H Q+K +G Y N +W L G G+KTG Sbjct: 449 KISCNAMKLESFKKIVTTKIHTAQVKVKNQQG-LYENVSWTWENTNKLLDKGWSGIKTGI 507 Query: 221 TCASGFNIVASAI-------QGDQSLIAVILGALDRNTR 252 T A+G +AS I + ++ LI VIL A + R Sbjct: 508 TDAAG-PCLASCIKFKDPINEINRYLIIVILSAQSMDIR 545 >gi|225075807|ref|ZP_03719006.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens NRL30031/H210] gi|224952840|gb|EEG34049.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens NRL30031/H210] Length = 310 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 + + TG V+ + PD AS++KLM+A VV + + PITI++ Sbjct: 75 IFNNKTGEVLYQKNPDRVMPIASISKLMSAMVVL----DAHLDMNEPITITEAEIDRLKG 130 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FV MN +++LG+S++ Sbjct: 131 TGSRLSIGTTLTRGELLHLSLMSSENRATHALGRTYPGGLSAFVAAMNAKAQSLGMSSSR 190 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNT 203 F G + + +TARD+ + + +P Y + + G + Y N+ Sbjct: 191 FYEPTG-LNFQNVSTARDLNRMV-AAASKYPLIRKNSTSNYGSVWTVNGRQ----NYKNS 244 Query: 204 NWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N V G++ + KTG+ +G ++V A +Q + V+L + TR Sbjct: 245 NALVREGSW-NIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTR 294 >gi|294629041|ref|ZP_06707601.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] gi|292832374|gb|EFF90723.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14] Length = 425 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/284 (21%), Positives = 120/284 (42%), Gaps = 34/284 (11%) Query: 18 PFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS-FLK 70 P T+ LP + L D +G V+A PAS K++ A V + F + Sbjct: 34 PGAQARGTSALPARLTAQAWLLADWESGEVLAAYRAHERLAPASTLKMLFADTVLAKFPR 93 Query: 71 EKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +T + + ++ P +S + G+T T++ + + ++S ND AV + ++ Sbjct: 94 TDRHTVT-----AADLADIPEGSSLVGIQPGTTYTVEQLWQGVFLRSGND-AVHVLAAMN 147 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-------------W 175 K V M + +L TH ++ G G ++A D+ + + Sbjct: 148 GGIAKTVAEMQARAADLQALDTHVVSPDGYDHPGQVSSAYDLTLFARHGLKNADFRGYCG 207 Query: 176 RIKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 DFP FQI+ + + +W + T+ G G+K G+T +G +A++ Sbjct: 208 TRAADFPAGGKKTFQIQNTD----RLLTGSWGLKTYDGMIGVKNGYTSHAGNTFTGAAVR 263 Query: 235 GDQSLIAVIL-GALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 G ++L+ ++ A N + SA+LL GF + + ++ Sbjct: 264 GGRTLLVTVMHPAAGANAVYEESAALLDWGFAQGGAARAVGVLV 307 >gi|332978541|gb|EGK15250.1| D-alanyl-D-alanine endopeptidase PbpG [Psychrobacter sp. 1501(2011)] Length = 343 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 23/234 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 +LD TG + E D AS+TK+MTA VV ++E+ + K AS Sbjct: 102 VLDVATGKPLYEKNADIARPIASITKIMTAMVVLDAGLDMREEIKLDPEDFVGPKRAS-- 159 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S K G M L + ++KS N A ++A + F++ MN +++LG+++ Sbjct: 160 ----SRLKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNAKARSLGMNS 215 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHY-FQIKGLEIKGKKYPNT 203 F + G+ + + + D+A + + + F +Y F + + YP + Sbjct: 216 AFFGDPTGLDKR-NVASPMDLAKMVQAAGQYEVIRRFSTTKNYDFYVANYTDGNRTYPAS 274 Query: 204 NWA----VGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N + GT+ +G KTGF +G +V ++ I VILGA NTR Sbjct: 275 NTSKLVRGGTYPIGIS--KTGFINEAGQCVVMETQFNNRPAIIVILGADSSNTR 326 >gi|296113230|ref|YP_003627168.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4] gi|295920924|gb|ADG61275.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4] Length = 386 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 22/235 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 + D G +I D + AS++K+MTA V+ ++E+ ++ + + +K AS Sbjct: 144 VYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMREEITLIASDLIGAKQAS-- 201 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + K G MT +++++S N A A+A + F+ MN + +LG+ Sbjct: 202 ----TRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIVAMNQKAYDLGMYQ 257 Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHYFQIKGLEIKGK 198 T F ++ G + + ++A D+ I+ S R + P Y Y G + Sbjct: 258 TKFSDSSG-LDPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIY 316 Query: 199 KYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 K NTN V G+ KTG+ +G+++V ++ I V+LGA + R Sbjct: 317 KGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANR 371 >gi|63256357|gb|AAY37453.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas syringae pv. syringae B728a] gi|330973126|gb|EGH73192.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + PD AS+TKLMTA VV L K+ M I N S+ P Sbjct: 30 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDE---VIPVNISQTPEM 83 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + GS M + L + ++ S N A ++A S F+ MN +K LG+ Sbjct: 84 KGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKH 143 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++ G+ + + +TARD+ L + +Y ++ E K + + +G Sbjct: 144 TAYVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYTLG- 197 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F D + KTGFT +G +V ++ + VIL A + T Sbjct: 198 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 250 >gi|237786122|ref|YP_002906827.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii DSM 44385] gi|237759034|gb|ACR18284.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii DSM 44385] Length = 474 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 31/206 (15%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P + PAS+ K++ A L + + T ++ + Sbjct: 166 WLIYDVDSGDVIAAKDPHGRYRPASIFKVLLAREAIDRLPLDRVL-----TATQEDANME 220 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S++ T+ AL+ L+++S ND A + +L EKK + + + G T Sbjct: 221 GSHAGIGPDGKYTVRQALQGLLMRSGNDCAHLLMRALGG-EKKVLADLQKRADGSGTQDT 279 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKT----------DFPQYMH--YFQIKGLEI 195 + G+ G T+A D+A+L ++ KT DFP Y FQI Sbjct: 280 RVTSYSGLDAPGLQTSAYDLALLYREAFHNKTFNEIVNTKLVDFPGYQDNPGFQIS---- 335 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFT 221 N N + T+ GA G KTGFT Sbjct: 336 ------NDNEMLFTYEGAFGGKTGFT 355 >gi|169634636|ref|YP_001708372.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii SDF] gi|169153428|emb|CAP02565.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and penicillin-binding protein 8 [Acinetobacter baumannii] Length = 348 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TKLMTA V + + ++ IT+ + + Sbjct: 109 VMDAQTGEVLYSKNTNASVPIASITKLMTAVVT----ADARLNMSEEITLEQIDFAGAGG 164 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN + LG++A Sbjct: 165 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNAKAHALGMNA 224 Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174 TH+ + G+ + ++ARD+ IL+ Sbjct: 225 THYYESTGLDPR-NVSSARDLGILA 248 >gi|238028027|ref|YP_002912258.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia glumae BGR1] gi|237877221|gb|ACR29554.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia glumae BGR1] Length = 379 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS++KLMTA VV + KA L I ++ +Y + S GS ++ ++ L + + Sbjct: 152 ASISKLMTAMVVL----DSKAPLEEQIEVTDADRDYEKGTGSRLSVGSVLSREDMLHIAL 207 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ F+ MN +K LG++ THF N+ G+ + ++ARD+ Sbjct: 208 MASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDTHFENSTGLTSL-NVSSARDLVK 266 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKK---YPNTN-------WAVGTFLGADGMKTGFT 221 + +P + + + GK+ Y +TN W +G KTGF Sbjct: 267 M-IDAAYQYPLIRRFSTDRTYTVFTGKRSLVYNSTNALVRNPSWDIGL------QKTGFI 319 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 +G +V A + ++ V+L + + +R +A + Sbjct: 320 NEAGECLVMQATIHGRPIVMVLLDSFGKYSRTADAARV 357 >gi|261340569|ref|ZP_05968427.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316] gi|288316977|gb|EFC55915.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 10/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TKLMTA VV A L + + S P Sbjct: 45 IVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD------ARLPLDEKLKVDISHTPEM 98 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K+LG++ Sbjct: 99 KGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKSLGMTN 158 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 T F+ G+ H + +TARD+ L Sbjct: 159 TRFVEPTGLSIH-NVSTARDLTKL 181 >gi|223041814|ref|ZP_03612004.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202] gi|223017383|gb|EEF15804.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202] Length = 291 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 17/220 (7%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P +S+A++ Y + D V+ P+ AS+TKLMTA V FL E Sbjct: 11 LLPVVSMAQS-----YVVYDFTHDRVLESRSPNSVQPIASVTKLMTANV---FL-ENNQN 61 Query: 76 LTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 I+I+ ++Y ST + ++ LK ++V S N A A++ + + +F Sbjct: 62 RNCAISITDEDADYIKGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAGMSRTQF 121 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-WRIKTDFPQYMHYFQIKGL 193 +Q MN ++ LG+ +T F ++ G + + ++ D+ L+ + + Q + + Sbjct: 122 IQKMNEKARELGMRSTRFSDSSG-LSSANVSSVMDLVKLAKYSLGKSQIQVLSNMAAAYI 180 Query: 194 EIKGKK---YPNTNWAVGTFLGADGM-KTGFTCASGFNIV 229 G+K NTN V L + + KTG+ SG+N+V Sbjct: 181 H-AGRKNIFVKNTNKLVREELFSAAINKTGYIRESGYNLV 219 >gi|118388940|ref|XP_001027563.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89309333|gb|EAS07321.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 363 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 55/301 (18%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEY 89 + + D TG ++ + ASLTK+ T V ++ K T ++S+NA+ Sbjct: 70 WCIYDAKTGQYQRGHHSNEIREMASLTKMATLLVSLRLVERFKLDPTQLYFSVSENAANT 129 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE---------------------SLC 128 + S ++ + + + L++ S ND AV +AE S+ Sbjct: 130 RGTTSRLEENEWVLVKDLFYGLMLPSGNDSAVVLAENFGCLLYFDSIGQNKVFQEIHSVD 189 Query: 129 KTE--------KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-RIKT 179 TE K F++ MN+ + L +T F N HG+V +Y+T D+A L++ +K Sbjct: 190 VTEDIYVRDYMKLFLKEMNSICEEFNLKSTKFNNPHGLVNKHNYSTCNDLARLTYFCLKN 249 Query: 180 D----------FPQYMHYFQIKGLEI-KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + + + Y Q I + + NTN + G G+KTG T A+G + Sbjct: 250 EEFRKIVATKTYRAVVKYVQFDNKVIERSILWENTNKLLDR--GFKGVKTGITVAAGACL 307 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 + Q +D ++ + + ++ +G N+ R + + D+Y Q L ++ Sbjct: 308 SSWYTQ-----------TIDDYSKEECNIIIIVLGSVNQEQRFQDTIRLADWYVQRLKDK 356 Query: 289 V 289 + Sbjct: 357 I 357 >gi|268607998|ref|ZP_06141729.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens FD-1] Length = 172 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 V +AND +AE ++ ++FV+ MN+ + +LGL T F + G YTTA D+A Sbjct: 3 FVGNANDALTVLAEKSERSAEEFVKRMNSEAFDLGLRDTAFYSPDGYHDDREYTTAHDIA 62 Query: 172 ILSWRI-KTDF--PQYMHYFQIKGLEIKGK-KYPNTNWAVGTFLGADGMKTGFTCASGFN 227 ++ ++ K DF P + + G +G+ + N N T+ G K + +G+ Sbjct: 63 VICAKLAKYDFLAPFFSTWRDFVG---EGRTELVNENKLSRTYDQHIGFKAVHSDHTGYC 119 Query: 228 IVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGF 264 I G +AV+LGA D +T + LL G+ Sbjct: 120 IAEGGDNGKGMRCVAVVLGAEDADTMYDTAKLLLKKGY 157 >gi|218288202|ref|ZP_03492501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius LAA1] gi|218241561|gb|EED08734.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius LAA1] Length = 402 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 19/206 (9%) Query: 54 ASLTKLMTAYVVFS-----FLKEKKAMLTTPITISKNASEYPPSNSTFK--KGSTMTLDN 106 AS+TK+MTAY+V ++ ++ TP + + S K G +T Sbjct: 81 ASVTKVMTAYLVLQKHPLQLGQQGPSITITPDDVKVYERDKALGQSVVKVAAGEKITEYQ 140 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 AL+ L++ S N++ +A+ + + FVQ MN T+K LG++ TH+ + G Sbjct: 141 ALQGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGYSPASQSDA 200 Query: 167 ARDMAILSWRIKTD-FPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFLGADGMKTGFTCA 223 M + + ++ F Q + Q + L + G Y N + V GT +G KTG T Sbjct: 201 VDQMKLFALAMENPVFRQIVGEAQAE-LPVAGLVY-NVDSVVGHGTIIGG---KTGSTLE 255 Query: 224 SG--FNIVASAIQGDQSLIAVILGAL 247 +G F A + G + ++ I+GA+ Sbjct: 256 AGGCFVFAARKVIGSREVL--IIGAV 279 >gi|333026337|ref|ZP_08454401.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] gi|332746189|gb|EGJ76630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Tu6071] Length = 858 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------SEYPPSNSTFKKGSTMTLDNA 107 AS+ K+MTAY+V KK IT+ + A S S + G ++ A Sbjct: 532 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 591 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+ + +TA Sbjct: 592 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLNKT-TVSTA 650 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASG 225 D L ++ P + ++ ++ GK TNW + G+KTG T A+G Sbjct: 651 EDQVKLG-KVAMKDPLFREVVRMPAYVDSNGKT--QTNWNRLVPMNNTVGIKTGTTTAAG 707 Query: 226 FNIVASAIQGDQSLIAVILGAL 247 N++ +A + I+GA+ Sbjct: 708 GNLLYAATKEVGGTTRTIVGAV 729 >gi|330875216|gb|EGH09365.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 281 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA +V L K++M P+ IS+ E Sbjct: 17 VVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIV---LDAKQSMDEVIPVNISQT-PEMKG 72 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 73 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 132 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 133 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYILG-FS 186 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 187 NTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 237 >gi|301384572|ref|ZP_07232990.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato Max13] Length = 313 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA +V L K++M P+ IS+ E Sbjct: 49 VVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIV---LDAKQSMDEVIPVNISQT-PEMKG 104 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 105 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 164 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 165 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYILG-FS 218 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 NTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 269 >gi|2764670|emb|CAA04971.1| pbp2 [Streptomyces clavuligerus] Length = 696 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 11/184 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNST----FKKGSTMTLDNAL 108 AS K+MTAYV+ K+ IT+ ++ +E + + +G T + + L Sbjct: 364 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 423 Query: 109 KLLIVKSANDIAVAIAESLCKTEKK--FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K+L++ S N+I +A KT+ + FV+ MN +K+LG+ T + + G + G +T Sbjct: 424 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSG-LDKGTVST 482 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYPNTNWAVGTFLGADGMKTGFTCAS 224 A D L+ + ++ + + EI G+ Y N + + LG G+KTG + Sbjct: 483 AVDQLKLAEAV-MEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSNTPA 541 Query: 225 GFNI 228 G + Sbjct: 542 GGTL 545 >gi|270260850|ref|ZP_06189123.1| putative endopeptidase [Serratia odorifera 4Rx13] gi|270044334|gb|EFA17425.1| putative endopeptidase [Serratia odorifera 4Rx13] Length = 309 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ PD AS+TKLMTA V ML+ I E Sbjct: 48 VVDMQTHKVMYARNPDEVVPIASITKLMTAMVTLDAHLPLDEMLSVDI---HQTPEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S +T + L L ++ S N A ++A F++ MN ++ LG++ TH+ Sbjct: 105 YSRVRLNSEITRKDMLLLALMSSENRAAASLAHHYPGGYGAFIKAMNAKARALGMTNTHY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + + + N+ + F Sbjct: 165 VEPTGLSIH-NVSTARDLTKLLIATK----QYPLIGQLSTTTERMASFKDPNYTL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G +S+ V+L A + T Sbjct: 219 TNHLVYNPKWNIQLTKTGFTNEAGHCLAMRTMIGSRSVSLVVLDAFGKYT 268 >gi|330967602|gb|EGH67862.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 311 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA +V L K++M P+ IS+ E Sbjct: 47 VVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYILG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|302519918|ref|ZP_07272260.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] gi|302428813|gb|EFL00629.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78] Length = 939 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------SEYPPSNSTFKKGSTMTLDNA 107 AS+ K+MTAY+V KK IT+ + A S S + G ++ A Sbjct: 613 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 672 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+ + +TA Sbjct: 673 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLNKT-TVSTA 731 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASG 225 D L ++ P + ++ ++ GK TNW + G+KTG T A+G Sbjct: 732 EDQVKLG-KVAMKDPLFREVVRMPAYVDSNGKT--QTNWNRLVPMNNTVGIKTGTTTAAG 788 Query: 226 FNIVASAIQGDQSLIAVILGAL 247 N++ +A + I+GA+ Sbjct: 789 GNLLYAATKEVGGTTRTIVGAV 810 >gi|28869869|ref|NP_792488.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str. DC3000] gi|213969996|ref|ZP_03398129.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1] gi|302060754|ref|ZP_07252295.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato K40] gi|302132778|ref|ZP_07258768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853114|gb|AAO56183.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str. DC3000] gi|213925321|gb|EEB58883.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1] Length = 311 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA +V L K++M P+ IS+ E Sbjct: 47 VVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ G+ + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTGLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYILG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|227508596|ref|ZP_03938645.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191928|gb|EEI71995.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 442 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 124/281 (44%), Gaps = 38/281 (13%) Query: 5 LVIIAMAMLSNIFPFLSI-AETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLT 57 ++++ +++ + P + A++ KL Y ++D +G ++ + D ASL+ Sbjct: 27 VILVLTCVIAALVPSATAQAKSKKLKYKFEAKEIYVMDAKSGQMLYQKNSDQRRPIASLS 86 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIV 113 KLMT Y+ + + + + +SK + Y K+ T+ + ++ Sbjct: 87 KLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKRSKQYTVKQLYQAALI 146 Query: 114 KSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158 S+N A+A+ E + + KF+ MN ++ G+ A HF+++ G+ Sbjct: 147 ASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGIDA-HFVSSSGLDNTDLTTYKLQVPG 205 Query: 159 --VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFLG-- 212 + + +A+ ++ ++ ++ +FP + + +++ + N+N + F Sbjct: 206 TGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAFYKKS 265 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 DG+KTGFT +G + S + LIA I +D NT Sbjct: 266 EHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATI---IDSNT 303 >gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] gi|151281502|gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] Length = 436 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 31/234 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +LD +T V+ E + AS+TKLMT VV ++ +L ++ S Sbjct: 189 VLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEV---TEEDIDREKNS 245 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + GS ++ N L + ++ S N A A+ + FV MN +++LG++ TH+ Sbjct: 246 SSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGTHY 305 Query: 153 MNAHGVVQHGHYTTARDMA--ILSWRIKTDFPQY---MHYFQIKGLEIKGK--KYPNTN- 204 +++ G+ + + +A D+A +++ + QY Y +E G+ +Y N+N Sbjct: 306 VDSTGLSSN-NVASAADLAKLVIAASNHSILRQYSTDTKYV----VEPGGRALQYANSNR 360 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDR 249 W +G KTG+ +G +V A + ++ + L G L R Sbjct: 361 LVNNPDWEIGI------QKTGYISEAGRCLVMQANINGRPIVMIFLDSKGKLSR 408 >gi|227511580|ref|ZP_03941629.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri ATCC 11577] gi|227085225|gb|EEI20537.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri ATCC 11577] Length = 442 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/281 (19%), Positives = 121/281 (43%), Gaps = 38/281 (13%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPASLT 57 ++++ +++ + P + +K P Y ++D +G ++ + ASL+ Sbjct: 27 VILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQKRPIASLS 86 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIV 113 KLMT Y+ + + + + +SK + Y KK T+ + ++ Sbjct: 87 KLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQLYQAALI 146 Query: 114 KSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158 S+N A+A+ E + + KF+ MN ++ G+ A HF+++ G+ Sbjct: 147 ASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGIDA-HFVSSSGLDNTDLTTYKLQVPG 205 Query: 159 --VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFLG-- 212 + + +A+ ++ ++ ++ +FP + + +++ + N+N + F Sbjct: 206 TGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAFYKKS 265 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 DG+KTGFT +G + S + LIA I +D NT Sbjct: 266 EHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATI---IDSNT 303 >gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118172847|gb|ABK73743.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length = 275 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 15/217 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NAS-- 87 + + D +TG V+A P + PAS K + A VV L+ P ++ NAS Sbjct: 47 WLVADMDTGRVLASKDPYGSYAPASTIKPLLAMVVLDHLR--------PDNFARANASHT 98 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S K G T L L++ S ND A +A+ L + V MN + +G Sbjct: 99 KVECSCVGLKPGQPYTTRQLLDALLMVSGNDAANMLADML-GGPRVAVAAMNRKAAAVGA 157 Query: 148 SATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 T + G+ G TT D+A++ +R ++P + + GK N Sbjct: 158 RNTRAASPSGLDGPGWESLTTPHDLAVI-FRAALNYPVIAQILRQTTAQFPGKTLTYQNE 216 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + + G G KTG+T + V +A +G++ L+ V Sbjct: 217 LLTRYPGDIGGKTGYTNLARKTYVGAAQRGNRRLVVV 253 >gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 734 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFK 97 G ++ E +PA L K+M + + +T ++ K S + S S + Sbjct: 28 GRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDT-VTVSDSVIKQISNWKGSASINLE 86 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G +++ + + +++ SAND A+AE +C + KF M +K++G + T A G Sbjct: 87 AGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAKSIGAADTTVTTADG 146 Query: 158 VVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKK-YPNTNWAVGT--- 209 Y+ A D+AI+ T+ + I G + NTN + + Sbjct: 147 RFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNR 206 Query: 210 ---FLGADGMKTGFTCASGFNIVASAI----QGDQSLIAVILGA 246 + A G+K+G+T S + SA+ + + ++A+ILGA Sbjct: 207 RYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGA 250 >gi|226330782|ref|ZP_03806300.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198] gi|225201577|gb|EEG83931.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198] Length = 109 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 34/54 (62%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + DG+KTG T +G+N+V+SA +GD LIAV+LGA R S LL GF Sbjct: 1 MNVDGVKTGHTNGAGYNLVSSATEGDMRLIAVVLGAPSDKVRFAESEKLLGWGF 54 >gi|298231089|ref|ZP_06964770.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str. Canada MDR_19F] Length = 134 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 11/102 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ I S+YP Sbjct: 35 VEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDI----SDYPYQL 90 Query: 94 STFKKGSTM-------TLDNALKLLIVKSANDIAVAIAESLC 128 +T + S + T++ L+ +V SAN A+A+AE + Sbjct: 91 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIA 132 >gi|182437259|ref|YP_001824978.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465775|dbj|BAG20295.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 323 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--YPPSNSTFK--KGSTMTLDNALK 109 AS+TK+MTAYV+ + + + A++ Y +T G T L+ Sbjct: 71 ASVTKVMTAYVILKGHPMRADSHGATVVADRRAADESYSSVETTAPVLAGKEYTQRRLLE 130 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++V S N++A +A E+ FV MN + LG+ AT + G ++ +TA D Sbjct: 131 LMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSG-METSTRSTADD 189 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGAD---GMKTGFTCAS 224 L+ R P + + G + NTN LG D G+KTG + + Sbjct: 190 QLRLA-RAAMKDPVFRQVVATASVTAPGAGATFRNTN----KLLGRDGVIGLKTGSSTPA 244 Query: 225 GFNIVASAIQGDQSLIAVILG 245 G N+V + Q +ILG Sbjct: 245 GGNLVWATTQKVAGASRLILG 265 >gi|109240381|dbj|BAE96115.1| D, D-carboxypeptidase [Enterococcus raffinosus] Length = 355 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 35/234 (14%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++TA V + ++ M + I + + S S + KG T+T+ L L Sbjct: 125 PASTAKMITALTVLEYCSPEEEMRVGAEIEMIHSDS----STAWLMKGDTLTVRQLLIAL 180 Query: 112 IVKSANDIAVAIA----------ESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 ++ S ND A +A SL + + F+ +N ++ +G++ ++F+ G Sbjct: 181 MLPSGNDAAYTLAVNTGKVIAGDNSLSNQQAIQIFMDKVNEKARAIGVTDSNFVVPDGYD 240 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGAD- 214 G YTTA D+AI++ D +I +K+PN L + Sbjct: 241 AEGQYTTAYDLAIIAKACLED----PIISEIVASNTSYEKWPNGREVTYNNSNELLDPNS 296 Query: 215 --------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 G+KTG + G +V++A+ ++ I V++G+ + +R + S ++L Sbjct: 297 PYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVVMGST-KESRFQDSVAIL 349 >gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702] gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702] Length = 734 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFK 97 G ++ E +PA L K+M + + +T ++ K S + S S + Sbjct: 28 GRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDT-VTVSDSVIKQISNWKGSASINLE 86 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G +++ + + +++ SAND A+AE +C + KF M +K++G + T A G Sbjct: 87 AGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAKSIGAADTTVTTADG 146 Query: 158 VVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKK-YPNTNWAVGT--- 209 Y+ A D+AI+ T+ + I G + NTN + + Sbjct: 147 RFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNR 206 Query: 210 ---FLGADGMKTGFTCASGFNIVASAI----QGDQSLIAVILGA 246 + A G+K+G+T S + SA+ + + ++A+ILGA Sbjct: 207 RYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGA 250 >gi|330445937|ref|ZP_08309589.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490128|dbj|GAA04086.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 23/224 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 ++D +TG + + + ASLTKLMTA V L EK + TP + + Y Sbjct: 41 VIDLSTGKTLYKKNANVKMPIASLTKLMTAMVTLDAKLPLNEK--LTFTPTDKKRMYNTY 98 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + GST++ + + ++ S N A +A + F++ MN +K+LG++ Sbjct: 99 ----TRIRMGSTLSRGETIHIALMSSENLAAATLAGNYPGGYNAFIKAMNRKAKSLGMTN 154 Query: 150 THFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 THF+++ G+ H +TA D+A + R + P + YF ++ Y Sbjct: 155 THFVDSSGLDPHNR-STASDVAKMVRAAYKYPEIRKYSTTPVHTAYFGKPNYKL---GYT 210 Query: 202 NTN-WAVGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVI 243 NTN A G + KTGF +G + + + I G + L+ ++ Sbjct: 211 NTNALARGKKWTVNVTKTGFLDEAGRCLGMVTTIDGKKILMVML 254 >gi|262197058|ref|YP_003268267.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium ochraceum DSM 14365] gi|262080405|gb|ACY16374.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium ochraceum DSM 14365] Length = 340 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 27/241 (11%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + P +LD TG + + D AS K+ A VV +E+ L IS+ Sbjct: 56 QAPRAVILDAETGEPLFAKHADEVAAIASTGKIFVAMVV----RERGIDLEAVTEISEVD 111 Query: 87 SEYPPSNSTFKKGSTMTLD--------NALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 Y + G+ LD + L+ ++V S N +A+ ++ + ++ V M Sbjct: 112 RMY------ARGGARTRLDVGHGFRNIDLLRAMLVSSDNRAPIALGRAVGLSPEQLVAAM 165 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQ--IKGLE 194 N+ + LGL T F G+ G+ +TA +MAI D + M + ++ L Sbjct: 166 NHMASELGLRHTRFTCPSGL--RGNVSTAYEMAIALRAALADPVLAEIMGTAEVNVRSLH 223 Query: 195 IKGKK--YPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 K + Y NTN ++ + G KTGFT A+G+ +V +A + +I G T Sbjct: 224 SKPRAIDYRNTNLSLRRSSFEVLGGKTGFTRAAGYCLVVAARLAGRDVIMAFFGETHELT 283 Query: 252 R 252 R Sbjct: 284 R 284 >gi|289808199|ref|ZP_06538828.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 83 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 2 DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 54 >gi|170721278|ref|YP_001748966.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida W619] gi|169759281|gb|ACA72597.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas putida W619] Length = 296 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NT + ++ D AS+TKLMTA VV MLT +TI+ N + Sbjct: 36 LIDLNTNKELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLT--MTIANN-PDMKGV 92 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A F++ MN +++LG++ T + Sbjct: 93 YSRVRLGSQLNRRETLLITLMSSENRAATSLANHYPGGYPAFIKAMNAKARSLGMAHTRY 152 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + ++ARD+A L + +Y ++ K + N+ +G F Sbjct: 153 VEPTGLSTQ-NVSSARDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 206 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 207 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYT 256 >gi|313885620|ref|ZP_07819370.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola ACS-139-V-Col8] gi|312619350|gb|EFR30789.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola ACS-139-V-Col8] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 33/248 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SE 88 +++ + G ++ E D L+KL+T Y+V +K+ + T + IS A Sbjct: 43 VIEGHNGQILFEQNTDKLVEVGDLSKLLTLYLVLDAVKQGNISMDTEVPISDQAFYISQN 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 Y +N ++ +++ ++ ++++SAN +A+A+ + E KFV+ M L+ Sbjct: 103 YDINNVPLRQDYPYKVEDLIQAVVIQSANGATLALAQLIEPDEGKFVELMRQQLSQWHLN 162 Query: 149 ATHFMNAHGVVQ------HGHYTTARD------------MAILSWRIKTDFPQYMHYFQI 190 NA G+ Q + YT R+ +A + + + +P ++Y Q Sbjct: 163 DFEIFNATGMTQTQINDSYAPYTDDREKNKEVNRMSTEVVATIVYHLMDVYPDILNYSQ- 221 Query: 191 KGLEIKGKKYP------NTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 K +++ K N N V + ADG+ + + +IVA+A + +I Sbjct: 222 KDVDVFVKDSDDAFDMNNANLLVSGGEYNYDLADGLMVDDSHEAQASIVATAEKDGLRVI 281 Query: 241 AVILGALD 248 + LG D Sbjct: 282 GISLGQED 289 >gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] Length = 426 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 111/275 (40%), Gaps = 41/275 (14%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK---------EKKAMLTTPIT 81 + + D ++G V+A P + PAS K++ A V L E A+ + + Sbjct: 104 WVVADIDSGDVLAAKDPHGRYRPASTIKMLLALVALDELDLDKTVTATAEDAAVEGSAVG 163 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 I KN +Y +N +G L++ S ND A +A L + V+ MN Sbjct: 164 IGKNG-QY--TNRQLMQG-----------LVMASGNDAAHLLARQL-GGDAATVEKMNRL 208 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----------SWRIKTDFPQYMHYFQIK 191 + LG T G+ G ++ D+A++ + I T+ Q+ + + Sbjct: 209 ADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHNAMKNPTFAELISTETVQFPGFPKDP 268 Query: 192 GLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + P N N + + GA G KTGFT + V A + L+ ++GA Sbjct: 269 AIPEDQDRPPFALANDNQLLYNYPGALGGKTGFTDDARHTYVGGADHDGRRLMVTLMGAE 328 Query: 248 DRNTRN-KVSASLLSMGFYNKTDRKKINYIIKDFY 281 + R + +A LL GF DR ++D Y Sbjct: 329 AQPIRPWEQAARLLDYGF--ALDRDSRVGSLEDLY 361 >gi|269139886|ref|YP_003296587.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202] gi|267985547|gb|ACY85376.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202] gi|304559723|gb|ADM42387.1| Murein-DD-endopeptidase [Edwardsiella tarda FL6-60] Length = 309 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 12/226 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N VI ++PD AS+TKLMTA V ++ I +K E Sbjct: 49 VVDMNNHQVIYASHPDVQVPIASITKLMTAMVTLDAHPNLDEVIAVDIHRTK---ELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS +T L L ++ S N A +A F++ MN ++ LG++ TH+ Sbjct: 106 FSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMTRTHY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + G+ + + ++ARD+ L K +P + + K + Y T Sbjct: 166 VEPTGLSPN-NVSSARDLVKLLQAAK-GYPLIGELSTTETKSVTFAHPTYTETFNNTNHL 223 Query: 211 LGADG-----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L D KTGFT +G + + G + + V+L A + T Sbjct: 224 LRNDKWNIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYT 269 >gi|125554420|gb|EAZ00026.1| hypothetical protein OsI_22026 [Oryza sativa Indica Group] Length = 307 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI ++PD AS+TKLMTA VV A L + + S P Sbjct: 46 IVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD------AHLPLDEKLKVDISHTPEM 99 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N L L ++ S N A ++A F++ MN +K LG++ Sbjct: 100 KGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMNN 159 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH++ G + + +TARD+ L K QY Q+ + + N + + Sbjct: 160 THYVEPTG-LSINNVSTARDLTKLLIASK----QYPLIGQLSTTREEMATFANPAYTL-P 213 Query: 210 FLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 F + + KTGFT A+G +V + + + V++ A + T Sbjct: 214 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYT 266 >gi|89074889|ref|ZP_01161339.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp. SKA34] gi|89049286|gb|EAR54849.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp. SKA34] Length = 298 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG + + ASLTKLMTA V + K L +T + ++ + Sbjct: 41 VIDLSTGKTLYRKNSNVKMPIASLTKLMTAMVTL----DAKLPLDEKLTFTPTDKKHMYN 96 Query: 93 NST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 T + ST++ + + ++ S N A +A + K F++ MN +K+LG++ TH Sbjct: 97 TYTRIRMDSTLSRGETIHIALMSSENLAAATLAGNYPGGYKAFIKAMNRKAKSLGMTNTH 156 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 F+++ G+ H H +TA D+A + R +P+ Y Sbjct: 157 FVDSSGLDPHNH-STASDVAKMV-RAAYKYPEIRKY 190 >gi|326777880|ref|ZP_08237145.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces cf. griseus XylebKG-1] gi|326658213|gb|EGE43059.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces cf. griseus XylebKG-1] Length = 368 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--YPPSNSTFK--KGSTMTLDNALK 109 AS+TK+MTAYV+ + + + A++ Y +T G T L+ Sbjct: 116 ASVTKVMTAYVILKDHPMRADSHGATVVADRRAADESYSSVETTAPVLAGKEYTQRRLLE 175 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++V S N++A +A E+ FV MN + LG+ AT + G ++ +TA D Sbjct: 176 LMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSG-MEASTRSTADD 234 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGAD---GMKTGFTCAS 224 L+ R P + + G + NTN LG D G+KTG + + Sbjct: 235 QLRLA-RAAMKDPVFRQVVATASVTAPGAGATFRNTN----KLLGRDGVIGLKTGSSTPA 289 Query: 225 GFNIVASAIQGDQSLIAVILG 245 G N+V + Q +ILG Sbjct: 290 GGNLVWATTQKVAGASRLILG 310 >gi|24372585|ref|NP_716627.1| D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1] gi|24346606|gb|AAN54072.1|AE015544_5 D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1] Length = 321 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 32/231 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPP 91 ++D T ++ + PD AS+TKLMTA V + K + +TI+ K+ E Sbjct: 59 VVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTL----DAKLPMDEKLTINIKDTKEMRG 114 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ L L ++ S N A ++A K F++ MN +K LG+ + Sbjct: 115 VYSRVRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNSR 174 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GK-----KYPN 202 F+ G+ + ++ARD+ +L + +P Q+ E K GK + N Sbjct: 175 FVEPTGL-SAKNVSSARDLVVL-LKASQGYPML---GQLSSTEKKTVTFGKPKYSLDFRN 229 Query: 203 TN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 TN W + KTGFT A+G +V + + V+L A Sbjct: 230 TNRLVYKDNWDIHL------TKTGFTNAAGHCLVMRTEMAKRKVAFVVLDA 274 >gi|119897114|ref|YP_932327.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] gi|119669527|emb|CAL93440.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] Length = 280 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 28/229 (12%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEYPPSNS 94 TG V+ E AS+TKLMTA VV L ++ A+ I K + S Sbjct: 38 TGEVLLEKNSSTVLPIASITKLMTAMVVLDAGLGLNDELAISDADIDTLKG------TGS 91 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 G+ +T + L+L ++ S N A A+A E+ FV+ MN ++ LG T + + Sbjct: 92 RLVLGTRLTREEMLRLALMSSENRAASALARHYPGGERAFVEAMNVKARLLGAWDTRYYD 151 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIKGK--KYPNTN------ 204 + G + + ++ RD+A + T +P + + ++I G+ ++ NTN Sbjct: 152 STG-LNPANVSSPRDLAKVVSAAAT-YPLIREFSTTSERFVDIGGRTLRFANTNSLVRSP 209 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + KTG+ +G +V A Q ++ V++ + R TR Sbjct: 210 DWEIAVS------KTGYISEAGRCLVMQAWMHHQPVVIVLMDSNGRYTR 252 >gi|238784240|ref|ZP_04628252.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970] gi|238714807|gb|EEQ06807.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970] Length = 313 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 ++D T VI N PD AS+TKLMTA VV + K L I++ + + E Sbjct: 51 VVDLQTNKVIYANNPDEVVPIASITKLMTAMVVL----DAKLPLDEIISVDVHQTKEMKG 106 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + S ++ + L L ++ S N A ++A FV MN +K+LG++ TH Sbjct: 107 VFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFVNAMNVKAKSLGMTKTH 166 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + G + + +TARD+ L K QY Q+ K + N+ + F Sbjct: 167 YTEPTG-LSIDNVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFREPNYTL-PFR 220 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G + + V+L A + T Sbjct: 221 NTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGSRPVALVVLDAFGKYT 271 >gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 734 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFK 97 G ++ E +PA L K+M + + +T ++ K S + S S + Sbjct: 28 GRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDT-VTVSDSVIKQISNWKGSASINLE 86 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G +++ + + +++ SAND A+AE +C + KF M +K++G + T A G Sbjct: 87 AGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAVMMQEKAKSIGAADTTITTADG 146 Query: 158 VVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKK-YPNTNWAVGT--- 209 Y+ A D+AI+ T+ + I G + NTN + + Sbjct: 147 RFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNR 206 Query: 210 ---FLGADGMKTGFTCASGFNIVASAI----QGDQSLIAVILGA 246 + A G+K+G+T S + SA+ + + ++A+ILGA Sbjct: 207 RYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGA 250 >gi|297159756|gb|ADI09468.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis BCW-1] Length = 786 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 18/205 (8%) Query: 54 ASLTKLMTAYVVFSF----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+MTAYVV + E+ + K + S +G T L+ Sbjct: 459 ASVTKVMTAYVVLKEHPLKVSEEGPTIKIDAQAGKESGSEDESRVEVDEGQTYNELQMLQ 518 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +L++ S N+IA +A +E+ FV+ MN+ +K+LG+ T + + G T + Sbjct: 519 MLLIPSGNNIARQLARWDSGSEEAFVKKMNDAAKDLGMKNTVYTDPSGFKATTKSTASDQ 578 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCA 223 + + +K++ + + I G K P N N V G G+KTG + Sbjct: 579 LKLARAVMKSEA--FRSVVATPNIRIPGLKTPDSKIYNNNNLLV--KPGVVGIKTGSSTP 634 Query: 224 SGFNIVASA---IQGDQSLI-AVIL 244 +G ++ A + G++ LI V+L Sbjct: 635 AGGALMWGAEKTVDGNKRLILGVVL 659 >gi|293610046|ref|ZP_06692347.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024] gi|292827278|gb|EFF85642.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024] Length = 348 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89 ++D TG V+ + AS+TK+MTA V + + ++ IT+ + + Sbjct: 109 VMDAQTGEVLYSKNTNASVPIASITKVMTAVVT----ADARLNMSEEITLEQIDFAGAGG 164 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ST + G M L ++KS N A A+A + FV MN ++ LG+++ Sbjct: 165 KNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARALGMNS 224 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 TH+ + G+ + ++ARD+ IL Sbjct: 225 THYYESTGLDPR-NVSSARDLGIL 247 >gi|319637748|ref|ZP_07992514.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102] gi|317400903|gb|EFV81558.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102] Length = 318 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 + + TG V+ + PD AS++KLM+A VV + + PITI++ Sbjct: 83 IFNNKTGEVLYQKNPDRVMPIASISKLMSAMVVL----DAHLDMNEPITITEAEIDRLKG 138 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FV MN +++LG+S++ Sbjct: 139 TGSRLSIGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMSSSR 198 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNT 203 F G + + +TARD+ + + +P Y + G + Y N+ Sbjct: 199 FYEPTG-LNFQNVSTARDLNRMV-AAASKYPLIRKNSTSNYGSVWTANGRQ----NYKNS 252 Query: 204 NWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N V G++ + KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 NALVREGSW-NIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTR 302 >gi|157370801|ref|YP_001478790.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia proteamaculans 568] gi|157322565|gb|ABV41662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia proteamaculans 568] Length = 320 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 30/232 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ TG ++ + + ASLTKLMTA V L K+ + + + + + Sbjct: 88 VVNQRTGKILYQKQANRVQPIASLTKLMTAMVT---LDSKRPLGNRMMVTAADRDLLKKT 144 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S GST++ + L + ++ S N A A++ + K FV MN ++ +G+ F Sbjct: 145 HSRLTIGSTLSRRDMLHIALMSSENRAASALSRNYPGGRKAFVAKMNQKARTIGMKHARF 204 Query: 153 MNAHGV--------------VQHGH-YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 + G+ V H + Y T R + +I + Y GL Sbjct: 205 YDPTGLTPRNVASANDLLKMVNHAYRYQTIRRFSTDKQQIVRPGRGQLVYRSSNGL---- 260 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 N W + KTGFT +G +V + Q ++ ++LG+ R Sbjct: 261 --INNPTWKIQL------QKTGFTDEAGHCLVMRTLIKGQPVVIILLGSKQR 304 >gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] gi|326199370|gb|EGD56551.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] Length = 416 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 93/241 (38%), Gaps = 38/241 (15%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G VIA P + PAS K++ A V L K + TP S Sbjct: 109 WLIADLDSGRVIAAKDPHGRYRPASTIKVLLALVALDELPLDKQVEATPEDWSMEG---- 164 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ + L L+V S ND A A+A L + + MN + LG T Sbjct: 165 -DSCGMGPGGHYTVRDLLSGLVVVSGNDCANALAGQLGGHDAALAK-MNAKAAELGARDT 222 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTN----- 204 + G+ G T+ D+A+L +R + +K G K P+ Sbjct: 223 RATSPSGLDAPGMSTSPYDLALL-FREAMGNATFRQLISMKNYTFPGYPKRPDVPDDVDH 281 Query: 205 --WAVGT--------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 W +GT + G G KTG+T D +L +GA +RN R Sbjct: 282 PAWTMGTSNPLLRDDWPGMLGGKTGYT--------------DDAL-KTFVGAAERNGRRI 326 Query: 255 V 255 V Sbjct: 327 V 327 >gi|264676436|ref|YP_003276342.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] gi|262206948|gb|ACY31046.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2] Length = 205 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 18/98 (18%) Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA--------DGMKTGFTCASGFNIVAS 231 DFP+YMHY+ K YP T + G+ A DG+KTG T A+G+ +VA+ Sbjct: 3 DFPEYMHYYATKQYS-----YPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVAT 57 Query: 232 AIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A + G + L++++LG R S LL+ G+ Sbjct: 58 AKRDLPNVGQRRLLSIVLGTASEKARANESQKLLNWGY 95 >gi|227523786|ref|ZP_03953835.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii ATCC 8290] gi|227089101|gb|EEI24413.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii ATCC 8290] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/281 (19%), Positives = 122/281 (43%), Gaps = 38/281 (13%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPASLT 57 ++++ +++ + P + +K P Y ++D +G ++ + ASL+ Sbjct: 27 VILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQKRPIASLS 86 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIV 113 KLMT Y+ + + + + +SK + Y KK T+ + ++ Sbjct: 87 KLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQLYQAALI 146 Query: 114 KSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158 S+N A+A+ E + + KF+ MN ++ G++A HF+++ G+ Sbjct: 147 ASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGINA-HFVSSSGLDNTDLTTYKLQVPG 205 Query: 159 --VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--GTFLG-- 212 + + +A+ ++ ++ ++ +FP + + +++ + N+N + F Sbjct: 206 TGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAFYKKS 265 Query: 213 --ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 DG+KTGFT +G + S + LIA I +D NT Sbjct: 266 EHVDGLKTGFTDTAGLCLNVSFWHKGRHLIATI---IDSNT 303 >gi|227549943|ref|ZP_03979992.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium lipophiloflavum DSM 44291] gi|227077959|gb|EEI15922.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium lipophiloflavum DSM 44291] Length = 421 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 23/225 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A P + PAS+ K++ A V L K +T+S ++ Sbjct: 97 WLVADLDTGEVVAMKDPHGRYRPASIIKVLLALVAIDELPLDKQ-----VTVSAESANME 151 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T+++ L L++ S ND A A+A+ L E Q +N ++ LG++ T Sbjct: 152 GSAAGIGAGGVYTVNDLLHGLLMASGNDTAHALAQELGGDEATL-QKVNALAQQLGMNDT 210 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWR-----------IKTDFPQYMHYFQIKGLEIKGKK 199 G+ + G ++A DMA L++R + T + + + G E+ Sbjct: 211 RVATYTGLDRPGMSSSAWDMA-LAYRAAFGNETFARIVDTQSYPFPGFDDLPGFELWNDN 269 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 N G G KTG+T + V + + L+AV+L Sbjct: 270 ALYLNDPEGI-----GGKTGYTDDANHTFVGAVNHDGRRLVAVVL 309 >gi|21222827|ref|NP_628606.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] gi|7635949|emb|CAB88446.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 832 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFK--KGSTMTLDNALK 109 AS+ K+MTAY+V K I I + A + + ST G +++ AL+ Sbjct: 511 ASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQREALQ 570 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G + + +TA D Sbjct: 571 AILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSG-LNNTTVSTAVD 629 Query: 170 MAILSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 L+ + P + + + KG+ + N N VG G G+KTG T ++ N+ Sbjct: 630 QVKLA-KAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVG-HNGVVGIKTGTTTSALGNL 687 Query: 229 V 229 V Sbjct: 688 V 688 >gi|74058494|gb|AAZ98837.1| VanYD [Enterococcus gallinarum] Length = 346 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 46/230 (20%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++TA V + M + I + + S S + +G T+T+ L L Sbjct: 116 PASTAKMITALTVLDYCSPNDEMRVGAEIELMHDDS----SRAWLMQGDTLTVRQLLVAL 171 Query: 112 IVKSANDIAVAIAESLCKTEKK---------------FVQHMNNTSKNLGLSATHFMNAH 156 ++ S ND A +A T KK F+ +N +K+LG ++F+ Sbjct: 172 MLPSGNDAAYTLA---VNTGKKIAGDNGLSNAQSIDVFMDKVNQKAKSLGAENSNFVVPD 228 Query: 157 GVVQHGHYTTARDMAILSWRIKTD------FPQYMHYFQ-IKGLEIKGKKYPNTNWAVGT 209 G G YTTA D+A+++ D Y Y + G E+ Y NTN Sbjct: 229 GYDADGQYTTAYDLAVIAKACLDDPYISEIVASYSSYERWPNGREV---TYNNTN----E 281 Query: 210 FLGAD---------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 L + G+KTG + G IV++A+ + I ++G+ + + Sbjct: 282 LLNPNSPYYRPEVIGLKTGTSSLGGACIVSAAVINGNTYICAVMGSTEND 331 >gi|81427894|ref|YP_394893.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei subsp. sakei 23K] gi|78609535|emb|CAI54581.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei subsp. sakei 23K] Length = 428 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 33/244 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA---MLTTP-ITISKNASEY 89 +D +G V+ E D AS+TK++TAYVV +K+ K T P I K + + Sbjct: 40 IDPQSGQVLYEKNADQVLPIASMTKMITAYVVLDQIKQGKLKWNQTTKPDAAIYKLSQDK 99 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 +N + ++ + +++ SAND A+ +A + ++K FV M G+ Sbjct: 100 ELTNVPLQADKAYSVRELYQAMLIASANDAAMMLANLVAGSQKNFVDLMRQQVSQWGIKD 159 Query: 150 THFMNAHGVVQHGHYTT----------------ARDMAILSWRIKTDFPQYMHYFQIKGL 193 + G+ + Y T A ++AI++ + FP+ + + Sbjct: 160 AKLYSVSGL--NNQYLTGETYPGSAADAENEMSASEVAIVAQHLLKTFPEVLETTKQTAF 217 Query: 194 EIKGKKYPNTNWAVGTFL-----------GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 K T A + DG+KTG T +G +A + Q ++ V Sbjct: 218 TFGPKTIDETKMATWNLMLPGQNNAPKDYVVDGLKTGTTDKAGDCFTGTATKDGQRILTV 277 Query: 243 ILGA 246 ++ A Sbjct: 278 VMHA 281 >gi|238788777|ref|ZP_04632568.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC 33641] gi|238723082|gb|EEQ14731.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC 33641] Length = 322 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 60 VIDLQTNKVIYSNNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 117 YSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTKTRY 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + G+ +TARD+ L K QY Q+ K + + N+ + F Sbjct: 177 VEPTG-LSIGNVSTARDLTKLLVATK----QYPLIGQLSTTTEKMATFRDPNYTL-PFRN 230 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G + + V+L A + T Sbjct: 231 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGHRPVALVVLDAFGKYT 280 >gi|257438479|ref|ZP_05614234.1| penicillin-binding protein 5 domain protein [Faecalibacterium prausnitzii A2-165] gi|257199058|gb|EEU97342.1| penicillin-binding protein 5 domain protein [Faecalibacterium prausnitzii A2-165] Length = 446 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 5/143 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +++T+T ++ E + + LTK MT A V+ ++ + + T P IS + Sbjct: 41 IVNTDTNIIVYEKDSEKQVSAGGLTKYMTIALVLTNYADQLDSTFTMPFAISDYV--HNS 98 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSAT 150 N+ + G T T AL ++ ++AN+ A+ +A L + +V MN S+ +G + + Sbjct: 99 DNADMRSGETFTYREALYAMVTRNANEAAMGLAHELSGGDLAGWVSQMNTLSQRIGTTNS 158 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 + +A G + G+ TTA DM ++ Sbjct: 159 TWTDACG-LDSGNTTTAVDMYLI 180 >gi|154267921|gb|ABS72056.1| D,D carboxypeptidase [Ruminococcus gauvreauii] Length = 356 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 43/238 (18%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++ A + + M + I + ++ S S + KG T+T+ L L Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIEMIQSDS----STAWLMKGDTLTVRQLLIAL 181 Query: 112 IVKSANDIAVAIA----------ESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 ++ S ND A +A +SL + + F+ +N + NLG + + F+ G Sbjct: 182 MLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIEVFMDKVNEKAVNLGATNSKFVAPDGYD 241 Query: 160 QHGHYTTARDMAILSWRIKTDFP-------QYMHYFQI-KGLEIKGKKYPNTNWAVGTFL 211 G YTTA D+AI++ + D P Y Y + G E+ Y N+N L Sbjct: 242 AEGQYTTAYDLAIIA-KACLDNPIISEIVASYSSYEKWPNGREV---TYSNSN----ELL 293 Query: 212 GAD---------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G+KTG + G IV++A+ ++ I V++G+ + +R + S +L Sbjct: 294 DPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICVVMGST-KESRFQDSVDIL 350 >gi|322514766|ref|ZP_08067790.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC 25976] gi|322119262|gb|EFX91390.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC 25976] Length = 198 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 10/144 (6%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +FP LSIA++ Y + D ++ ++ AS+TKLMTA V K K Sbjct: 15 LFPTLSIAQS-----YVVYDFTHDKILESRSANNVQPIASVTKLMTANVFLENNKNKNC- 68 Query: 76 LTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +IS +Y T K +++ LK ++V S N A A++ S + +F Sbjct: 69 ---SASISDEDFDYIKGTGTKLPKYTSIACSELLKAMLVHSDNYAAHALSRSAGMSRSQF 125 Query: 135 VQHMNNTSKNLGLSATHFMNAHGV 158 +Q MN ++ LG+ +T F ++ G+ Sbjct: 126 IQKMNQKAQQLGMRSTRFSDSSGL 149 >gi|171059568|ref|YP_001791917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix cholodnii SP-6] gi|170777013|gb|ACB35152.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix cholodnii SP-6] Length = 323 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D T V+ P ASLTKLMTA VV E L + +S+ + Sbjct: 71 VIDQETSEVLFSKNPQAVLPIASLTKLMTALVVV----EAGQPLDEILEVSEADVDTEKF 126 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S S G+ +T ++ L L ++ S N A A+ FV MN + +LG++ TH Sbjct: 127 SRSRLAVGTRLTREDMLHLALMSSENRAAHALGRHFPGGLNAFVDAMNFKAASLGMADTH 186 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN--- 204 ++ G+ + +A D+A L + +P + E++ G++ + NTN Sbjct: 187 YVEPTGLSSR-NQASAPDLARL-VKAAYAYPLLRDFSTTPEAEVEVGRRTMQFRNTNGLI 244 Query: 205 ----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + +R Sbjct: 245 RNPTWDIGL------QKTGYIVEAGRCLVMQAKFAGRQLIMVFLDSTGKYSR 290 >gi|114562029|ref|YP_749542.1| D-alanyl-D-alanine endopeptidase [Shewanella frigidimarina NCIMB 400] gi|114333322|gb|ABI70704.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella frigidimarina NCIMB 400] Length = 302 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEY 89 L+D T V+ + P+ P AS+TKLM A V L EK ++ T + +N Sbjct: 43 LVDLTTNEVLYSSNPNQPVPIASVTKLMAAMVTLDAKLALDEKISVKITDSPVMRNIY-- 100 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + GS +T + L L ++ S N A ++A + K FV+ MN+ + LG+S Sbjct: 101 ----SRVRLGSVVTRETMLLLTLMSSENRAATSLAHNYPGGFKAFVRAMNDKATALGMSQ 156 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 T ++ G + + ++A D+ +L Sbjct: 157 TRYVEPTG-LSPDNVSSANDLILL 179 >gi|117927602|ref|YP_872153.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus cellulolyticus 11B] gi|117648065|gb|ABK52167.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus cellulolyticus 11B] Length = 465 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 18/277 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A PAS K++TA + L ++ P + + ++ Sbjct: 119 FIVADADTGEVLAAKDAHRQLAPASTLKVLTAITLIPRLDPAAGVVVQPDAVRVDGTKV- 177 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T ++ + L +++ SAND AVA+A++ E+ + MN + L T Sbjct: 178 ----GVVAGQTYSVRDLLTAMLMMSANDAAVALADANGGLEQTLAE-MNAEAAWLNARDT 232 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGKKY--PNTNW 205 G+ ++A D+A++ +R P + Y I ++ KG Y + Sbjct: 233 VAKTPDGLDAPNQASSAYDLALM-FRAGLAIPAFRTYLSITRMQFPAPKGASYQIQTHDR 291 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN--KVSASLLSMG 263 + T+ G G K G+T A+ + V +A + ++I ++ R+ N L G Sbjct: 292 LLLTYPGMIGGKNGYTVAAQASYVGAARRNGHTIIVAVM----RDQPNFWDEVKGLFDWG 347 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 F I ++ ++ S E P S T+ Sbjct: 348 FAVDGTATPIGTLVPPGPLKSPSAEAPAPSLPAGTSH 384 >gi|158929991|gb|ABW82972.1| endopeptidase [uncultured bacterium pEAF66] Length = 368 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 +LD N+ V+ E AS+TKLMT VV ++ +LT ++++ ++ Sbjct: 115 VLDQNSAEVLFEKNSKIALPIASITKLMTGLVVVEANQDMNEILT----VTEDDVDHEKW 170 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 ++S + GS ++ + L + ++ S N A A+ + FV+ MN ++ LG+ T Sbjct: 171 TSSRLRVGSQLSRASLLHIALMSSENRAAAALGRNYPGGVAGFVEAMNAKARALGMYDTR 230 Query: 152 FMNAHGVVQHGHYTTARDMAILS---------WRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 F+++ G+ + ++A D+A L+ + TD P+ + + L Y N Sbjct: 231 FVDSSGLSSK-NISSAHDLAKLAAFAYHQPLLRQFSTD-PKSVVAASGRTLN-----YHN 283 Query: 203 TNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 TN+ V + G+ KTGF +G +V A+ +++I V L + + +R Sbjct: 284 TNYLVASPDWDIGLQKTGFINEAGRCLVMQAMISGRAVIMVFLDSKGKQSR 334 >gi|213161813|ref|ZP_03347523.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 146 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAE 125 N F K+G +++ + + LIV S ND VA+A+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141 >gi|254482177|ref|ZP_05095418.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine gamma proteobacterium HTCC2148] gi|214037502|gb|EEB78168.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine gamma proteobacterium HTCC2148] Length = 278 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMTA VV + L +TI+K + + S + G+T++ + L + Sbjct: 63 ASITKLMTAMVVL----DSGIGLDEKVTITKEDRDLVRLTGSRLEYGATLSRREMILLAL 118 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S N A A+ + + F+ HMN ++ LG++ +HF + G+ + + +TA D+A Sbjct: 119 MSSENRAATALGRTYPGGMENFLAHMNRKARALGMTNSHFADPAGLKKE-NVSTAADLA 176 >gi|227872356|ref|ZP_03990707.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841785|gb|EEJ52064.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 222 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 57 TKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TKLMTA V S ++ + + + ++ K A S + + G ++++ N L +++ S Sbjct: 1 TKLMTALVCVSSVENLDQEFVVSGSSVIKEAGS---STAFLQVGESLSIRNLLYGMLLPS 57 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 ND AVA+AE+ + FV MN + LG ++HF N HG+ HYT+ D+ ++ Sbjct: 58 GNDAAVAVAEATAGSVSAFVDRMNEKALELGCLSSHFTNPHGLPDDNHYTSPYDIYLI 115 >gi|213023592|ref|ZP_03338039.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 148 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSANDIAVAIAE 125 N F K+G +++ + + LIV S ND VA+A+ Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141 >gi|289450082|ref|YP_003474721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184629|gb|ADC91054.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 748 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 18/217 (8%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPPSNSTFKKGSTMTLDNALKLL 111 PA++TKL + + + L ++ T I + +E FK G ++ + + Sbjct: 174 PATMTKLFSVLLAYDKLNQRLNEETDIIPSDVDGLAEVGARIIGFKVGESLPIADLFLGA 233 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S D A+A E FV+ MN +K LG++ +HF N G+ G T+ DMA Sbjct: 234 VMESGADAIRALARLSYGDENDFVKAMNEKAKALGMNDSHFSNCTGLSADGDSTSVHDMA 293 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD----------------G 215 I+ T PQ + G + + A+ + L D G Sbjct: 294 IVMALCATR-PQLVQMLCTAGYTTQKTDFHPYGIALNSILFNDIEQAKAQSEGRKVYIQG 352 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + G++ FN++ A G + L+ V GA R Sbjct: 353 GRPGWSPDGLFNLMTFAHVGKKLLVVVSAGADQAQAR 389 >gi|38233244|ref|NP_939011.1| putative peptidoglycan synthesis related protein [Corynebacterium diphtheriae NCTC 13129] gi|38199503|emb|CAE49154.1| Putative peptidoglycan synthesis related protein [Corynebacterium diphtheriae] Length = 410 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 TN + + D +TG VIA P + PAS+ K + A V L L+ +TI+ Sbjct: 94 TNTASAWMVFDLDTGAVIATKDPHGRYRPASVIKALIALVAIDELD-----LSKKVTITN 148 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + S F +G ++ L L++ S ND A A+A +L E ++ +N+ ++ Sbjct: 149 DDVNQEGSAVGFVEGIDYSVQQLLDGLLLGSGNDAASALARALGG-EDTTIKKINDLAQE 207 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL---SWR 176 LG T+ + G+ G T+ RD+A++ +W+ Sbjct: 208 LGTVDTYAASYTGLDAQGMSTSVRDLAVIYQAAWQ 242 >gi|229030194|ref|ZP_04186253.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] gi|228731112|gb|EEL82035.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] Length = 274 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 166 TARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWA----VGTFLGADGM 216 +ARD AIL+ R+ DFP+ + +I K +G KYP N NW + + G DG+ Sbjct: 34 SARDCAILAQRLIQDFPKMLDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGL 93 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG T +G + + LI+V++ A R + L GF N Sbjct: 94 KTGTTPEAGDCFTGTVERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 143 >gi|145490104|ref|XP_001431053.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398155|emb|CAK63655.1| unnamed protein product [Paramecium tetraurelia] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 38/208 (18%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-------ASEYPPSNSTFKKGSTMTLDN 106 ASLTKLMT YV +++ K + + +S + A + +++ + +TL + Sbjct: 104 ASLTKLMTCYVAIQLIRDLKINIYQIMYVSYDVYILTFKAVQISGTSAFLRAYDRITLYD 163 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKK-------------FVQHMNNTSKNLGLSATHFM 153 L L++ S ND A IAE+L K F+ MN + L ++ T F Sbjct: 164 LLHGLMLPSGNDAANVIAENLSSFVKDPVSNIALQYRIQPFISLMNQYALLLDMNDTQFY 223 Query: 154 NAH--------GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------ 199 N H G+ Y+ A D+A L +I D P M K + ++ Sbjct: 224 NPHGKPTSIFSGLSNDQSYSCAEDLATLCKQIIND-PLLMDIVNKKEHQATIQRNNKLIK 282 Query: 200 --YPNTNWAVGTFLGADGMKTGFTCASG 225 + NTN + F G G KTGFT +G Sbjct: 283 LTWENTNKML-EFEGYCGFKTGFTNKAG 309 >gi|318056957|ref|ZP_07975680.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG] Length = 886 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------SEYPPSNSTFKKGSTMTLDNA 107 AS+ K+MTAY+V KK IT+ + A S S + G ++ A Sbjct: 560 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 619 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+ + +TA Sbjct: 620 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLNKT-TVSTA 678 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKG-LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASG 225 D L ++ P + ++ ++ GK TNW + G+KTG T A+G Sbjct: 679 EDQVKLG-KVAMKDPLFREVVRMPAYVDSNGKT--QTNWNRLVPMNNTVGIKTGTTTAAG 735 Query: 226 FNIVASAIQGDQSLIAVILGAL 247 N++ +A + I+GA+ Sbjct: 736 GNLLYAATKEVGGTTRTIVGAV 757 >gi|319762474|ref|YP_004126411.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Alicycliphilus denitrificans BC] gi|330825675|ref|YP_004388978.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus denitrificans K601] gi|317117035|gb|ADU99523.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus denitrificans BC] gi|329311047|gb|AEB85462.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus denitrificans K601] Length = 364 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT ++ E + + PITI+++ + Sbjct: 114 VIDQDTKEVLLSKN-DHAVLPIASLTKLMTGLLI----SEARLPMDEPITITQDDVDTEK 168 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T++ L L ++ S N A A+ + FVQ MN ++ LG++ T Sbjct: 169 GSGSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLAVFVQRMNAKARLLGMTET 228 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN-- 204 ++ G+ + ++A D+A L D P E+ G++ Y NTN Sbjct: 229 RYVEPTGLSSK-NQSSAHDLATLVNVAHGD-PLLRELSTSPSHEVAVGQRVLQYNNTNRL 286 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + +R Sbjct: 287 VKSPSWDIGL------QKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSR 333 >gi|319940700|ref|ZP_08015042.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis 3_1_45B] gi|319805851|gb|EFW02618.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis 3_1_45B] Length = 395 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 22/152 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D + I + P P N +S+ LMT Y LK TI N E S Sbjct: 48 LVDLESSQTILADRPRTPENASSMLPLMTVYTTLELLKNG--------TIKNNLFE---S 96 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G +TL + L+ L++ D A+ ++L +EK F + +N+T+ LG+ AT F Sbjct: 97 VKNPWSGPDITLADLLQGLLMTGDPDAVEAVRQTLQLSEKDFSRQLNHTADALGMFATEF 156 Query: 153 M-----NAHGVVQHGHYTTARDMAILSWRIKT 179 N + +TA+DMA+L+ + T Sbjct: 157 TFPCNENTPCI------STAQDMALLAESLYT 182 >gi|242239829|ref|YP_002988010.1| D-alanyl-D-alanine endopeptidase [Dickeya dadantii Ech703] gi|242131886|gb|ACS86188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya dadantii Ech703] Length = 315 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D V+ PD AS+TKLMTA VV + ++ + IS+ A E Sbjct: 48 VVDLRNNEVLYSTNPDVVVPIASVTKLMTAMVVLDANQPMDERIS--VDISQTA-EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A + F+ MN +K LG++ T + Sbjct: 105 YSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAKALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + K + N ++++ F Sbjct: 165 VEPTGLSIH-NVSTARDLTKLLIASK----QYPLLSQLSTTQEKTATFTNPSYSL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + + + V+L A + T Sbjct: 219 TNHLIYRSDWNIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKFT 268 >gi|169839591|ref|ZP_02872779.1| Serine-type D-Ala-D-Ala carboxypeptidase [candidate division TM7 single-cell isolate TM7a] Length = 61 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 36/56 (64%) Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 +TN +G G DG+KTG+ A+G NIV +A +GD +IAVILG+ RN + A Sbjct: 3 STNTLLGNVQGVDGLKTGYHDAAGSNIVLTANRGDDRMIAVILGSNHAKDRNAIGA 58 >gi|331084015|ref|ZP_08333122.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402377|gb|EGG81947.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium 6_1_63FAA] Length = 316 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 53 PASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 P +T+LMTA + L E +A++ + + ++G +T+ L + Sbjct: 93 PGKVTQLMTALLAVERLNLEDEAVIEGDDRVYGKEAR----GCGLQEGYHVTVKQLLNAV 148 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V SA D A+A +++ FV MN + LG++ TH+ N+ G YTT D+ Sbjct: 149 LVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTTVYDIY 208 Query: 172 IL 173 +L Sbjct: 209 LL 210 >gi|323225526|gb|EGA09756.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323251306|gb|EGA35178.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] Length = 210 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGF 226 MA++ + D P ++ K G + N N W L DG+KTG T +G+ Sbjct: 1 MALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWD--NSLNVDGIKTGHTSKAGY 58 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 N+VASA +G LI+ ++G R S LL+ GF Sbjct: 59 NLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 96 >gi|300703920|ref|YP_003745522.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum CFBP2957] gi|299071583|emb|CBJ42907.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum CFBP2957] Length = 375 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ +Y Sbjct: 109 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQPMDELLE----ITEDDRDYERN 164 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ S FV MN + LG++ TH Sbjct: 165 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTH 224 Query: 152 FMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTN---- 204 +++++G + + ++A D+A I+ K + + G+ Y NTN Sbjct: 225 YVDSNG-LSSSNVSSAMDLAKIVMAAYKVPLIRQFTTTAEHTVNANGRTLHYVNTNRLVR 283 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A ++++ V L + TR Sbjct: 284 GGEWEIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 328 >gi|327393222|dbj|BAK10644.1| penicillin-binding protein 7 precursor PbpG [Pantoea ananatis AJ13355] Length = 315 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G + ++PD AS+TKLMTA VV + M+T I S+ P Sbjct: 49 IVDLTSGKTLFSSHPDRVRPIASITKLMTAMVVLDAHQPMNEMVTVDI------SQTPEM 102 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + S ++ + L L ++ S N A ++A + F++ MN ++ LG++ Sbjct: 103 RGVFSRVKLNSQISRRSMLMLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNH 162 Query: 150 THFMNAHGV 158 TH++ G+ Sbjct: 163 THYVEPTGL 171 >gi|319944125|ref|ZP_08018403.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC 51599] gi|319742619|gb|EFV95028.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC 51599] Length = 454 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 22/210 (10%) Query: 54 ASLTKLMTAYVVFSF---LKEKKAMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNA 107 ASLTKLMTA VV L EK I I ++ Y S S G+ +T Sbjct: 243 ASLTKLMTAMVVLDGGQPLDEK-------IRIEAEDRDTERY--STSHLPVGTELTRAEL 293 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++L ++ S N A A+A S FV N ++ +G+ + F++ G + + +TA Sbjct: 294 MQLALMSSENRAAHALARSYPGGVTAFVAAANRKAREIGMWDSVFLDPTG-LSASNVSTA 352 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKK-YPNTNWAVG-TFLGADGMKTGFTC 222 RD+A+L R +P+ + L+++ G + + TN VG G KTGF Sbjct: 353 RDLALLVAR-SARYPEIRRFSVASQLQVRTAYGTRVFHTTNPLVGNQQWGLTVQKTGFIN 411 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A + +I V+L + R +R Sbjct: 412 EAGNCVVMQARVNGRQMIIVLLDSQGRYSR 441 >gi|255521429|ref|ZP_05388666.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-175] Length = 99 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 43/69 (62%) Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 KG K +TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K Sbjct: 28 KGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKD 87 Query: 256 SASLLSMGF 264 + L+ +GF Sbjct: 88 TEKLMEVGF 96 >gi|291616796|ref|YP_003519538.1| PbpG [Pantoea ananatis LMG 20103] gi|291151826|gb|ADD76410.1| PbpG [Pantoea ananatis LMG 20103] Length = 315 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G + ++PD AS+TKLMTA VV + M+T I S+ P Sbjct: 49 IVDLTSGKTLFSSHPDRVRPIASITKLMTAMVVLDAHQPMNEMVTVDI------SQTPEM 102 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + S ++ + L L ++ S N A ++A + F++ MN ++ LG++ Sbjct: 103 RGVFSRVKLNSQISRRSMLMLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNH 162 Query: 150 THFMNAHGV 158 TH++ G+ Sbjct: 163 THYVEPTGL 171 >gi|237809560|ref|YP_002894000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas auensis DSM 9187] gi|237501821|gb|ACQ94414.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas auensis DSM 9187] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPP 91 +++ NTG ++ AS+TKLMTA VV + K + PITI+ + Sbjct: 173 IMNANTGRMVYGKNAARRTPIASITKLMTAMVVL----DAKLSMDQPITITNADVDRVKR 228 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+S + G+T++ + + L ++ S N A ++A + + F+ MN ++ LG+ T Sbjct: 229 SSSRLEIGTTLSRYDTMWLALMSSENRAAHSLARTYPGGKGAFIAAMNRKARALGMRNTV 288 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F ++ G+ ++ + +TA D+A++ Sbjct: 289 FYDSTGLNKN-NTSTAADLALM 309 >gi|304395773|ref|ZP_07377656.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp. aB] gi|304357067|gb|EFM21431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp. aB] Length = 347 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ ++PD AS+TKLMTA VV + M+ P+ IS+ E Sbjct: 81 IVDLTTNKVLFSSHPDRVRPIASITKLMTAMVVLDAHQPMNEMI--PVDISQT-PEMRGV 137 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S K S ++ N + L ++ S N A ++A + F++ MN +++LG+ T + Sbjct: 138 FSRVKLNSQISRRNMMLLALMSSENRAAASLAHAYPGGYNAFIRAMNAKARSLGMKQTRY 197 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 + G+ + ++A+D+ L + ++P+ Sbjct: 198 VEPTGLSTQ-NVSSAQDLVKL-LKATREYPE 226 >gi|228958790|ref|ZP_04120501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800887|gb|EEM47793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 166 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 51/111 (45%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L +KK L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 T+ + L L++ N A+A+AE + E F MN K Sbjct: 100 PIQVTSNDKTTIRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKDK 150 >gi|83745865|ref|ZP_00942922.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551] gi|207742996|ref|YP_002259388.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum IPO1609] gi|83727555|gb|EAP74676.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551] gi|206594393|emb|CAQ61320.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum IPO1609] Length = 392 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ +Y Sbjct: 126 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQPMDELLE----ITEDDRDYERN 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ S FV MN + LG++ TH Sbjct: 182 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTH 241 Query: 152 FMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTN---- 204 +++++G + + ++A D++ I+ K + + G+ Y NTN Sbjct: 242 YVDSNG-LSSSNVSSAMDLSKIVMAAYKVPLIRQFTTTAEHAVNANGRTLHYVNTNRLVR 300 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A ++++ V L + TR Sbjct: 301 GGEWEIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 345 >gi|118594052|ref|ZP_01551399.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales bacterium HTCC2181] gi|118439830|gb|EAV46457.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales bacterium HTCC2181] Length = 256 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 36/218 (16%) Query: 54 ASLTKLMTAYVVFSF---LKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNA 107 ASLTKLMTA V+ LKEK + ISK + ++ S TF G+ +T Sbjct: 25 ASLTKLMTAMVIIDSGLDLKEK-------VVISKEDIDRLKWTGSRLTF--GTKLTRLEL 75 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L + ++ S N A A++ S +K FV+ MN + LG+ + F + G+ + + +TA Sbjct: 76 LSVALMASDNRAASALSRSYPAGKKAFVRAMNIKALQLGMHNSFFADPTGLDKR-NISTA 134 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK-----YPNTN-------WAVGTFLGAD 214 RD+ ++ + +P +K GK+ + NTN W +G Sbjct: 135 RDLVRMT-KAAYQYPLIRDLSTNPNGNVKVGKRKKSIGFSNTNSLVRKGQWDIGL----- 188 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 KTGF +G +V + ++ +I V+L + + TR Sbjct: 189 -SKTGFIREAGRCLVMQTVINNEPVIIVLLDSFGKYTR 225 >gi|307324182|ref|ZP_07603390.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] gi|306889913|gb|EFN20891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces violaceusniger Tu 4113] Length = 886 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 15/202 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109 AS+TK+MTAYVV K ITI A+E S + K+G T T L+ Sbjct: 562 ASVTKVMTAYVVLKDHPLKGDAEGPKITIDAQAAEEAKSADESRAAVKEGQTFTQHQLLQ 621 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S+N+IA +A + FV+ MN+ ++ LG+ T + + G+ + T A Sbjct: 622 LLLINSSNNIARLLARWDAGSLDAFVKKMNDAAEGLGMKQTTYTDPSGLKESTKSTAADQ 681 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + ++++ + EI G + Y N N V G G+KTG + +G Sbjct: 682 LKLAKAAMQSEA--FRAVVATPNAEIPGLGDRIYNNNNLLV--KPGVIGIKTGSSTPAGG 737 Query: 227 NIVASAIQ----GDQSLIAVIL 244 ++ A++ Q ++ V+L Sbjct: 738 ALMWGAVRTIDGKKQRILGVVL 759 >gi|241760382|ref|ZP_04758477.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114] gi|261379793|ref|ZP_05984366.1| penicillin-binding protein 7 [Neisseria subflava NJ9703] gi|241319260|gb|EER55738.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114] gi|284797478|gb|EFC52825.1| penicillin-binding protein 7 [Neisseria subflava NJ9703] Length = 318 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 + + TG V+ + PD AS++KLM+A VV + + PITI++ Sbjct: 83 IFNNKTGEVLYQKNPDRVMPIASISKLMSAMVVL----DAHLDMNEPITITEAEIDRLKG 138 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FV MN +++LG++++ Sbjct: 139 TGSRLSIGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMTSSR 198 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNT 203 F G + + +TARD+ + + +P Y + G + Y N+ Sbjct: 199 FYEPTG-LNFQNVSTARDLNRMV-AAASKYPLIRKNSTSNYGSVWTANGRQ----NYKNS 252 Query: 204 NWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N V G++ + KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 NALVREGSW-NIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTR 302 >gi|260587695|ref|ZP_05853608.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|260541960|gb|EEX22529.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] Length = 334 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 53 PASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 P +T+LMTA + L E +A++ + + ++G +T+ L + Sbjct: 111 PGKVTQLMTALLAVERLNLEDEAVIEGDDRVYGKEAR----GCGLQEGYHVTVKQLLNAV 166 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V SA D A+A +++ FV MN + LG++ TH+ N+ G YTT D+ Sbjct: 167 LVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTTVYDIY 226 Query: 172 IL 173 +L Sbjct: 227 LL 228 >gi|269102713|ref|ZP_06155410.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162611|gb|EEZ41107.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 242 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLI 112 AS+TKLMTA V + K L IT +K E +N T + GST++ + + + Sbjct: 4 ASITKLMTAMVTL----DAKLPLNEKITFNKADKERMYNNYTRVRLGSTLSRGETIHIAL 59 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+A K FV+ MN +K LG++ T F+++ G+ + +TA D++ Sbjct: 60 MSSENLAAAALAGHYPGGSKAFVKAMNAKAKALGMTHTRFVDSSGLDPR-NVSTASDVSK 118 Query: 173 LSWRIKTDFPQYMHY 187 L R +PQ Y Sbjct: 119 LV-RAAYKYPQIRKY 132 >gi|207724146|ref|YP_002254544.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum MolK2] gi|206589355|emb|CAQ36317.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum MolK2] Length = 431 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ +Y Sbjct: 126 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQPMDELLE----ITEDDRDYERN 181 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ S FV MN + LG++ TH Sbjct: 182 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTH 241 Query: 152 FMNAHGV 158 +++++G+ Sbjct: 242 YVDSNGL 248 >gi|157369595|ref|YP_001477584.1| D-alanyl-D-alanine endopeptidase [Serratia proteamaculans 568] gi|157321359|gb|ABV40456.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia proteamaculans 568] Length = 309 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ PD AS+TKLMTA V ML+ I E Sbjct: 48 VVDMQTHKVMYARNPDEVVPIASITKLMTAMVTLDAHLPLDEMLSVDI---HQTPEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 105 YSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYGAFIKAMNAKAKSLGMTNTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L K QY Q+ + + + N+ + F Sbjct: 165 VEPTGLSIH-NVSTARDLTKLLIATK----QYPLIGQLSTTTERMASFKDPNYTL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G +S+ V+L A + T Sbjct: 219 TNHLVYNQKWNIQLTKTGFTNEAGHCLAMRTMIGSRSVSLVVLDAFGKYT 268 >gi|210634508|ref|ZP_03298135.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279] gi|210158809|gb|EEA89780.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279] Length = 450 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P+ +L + G E D P AS+TK+MTA V L+ +T+ A+ Sbjct: 58 PHAMILGQD-GTAYFERDADDPIKIASVTKVMTALVALEHCD-----LSDTVTVDHAAAT 111 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA--------IAESLCKTEKKFVQHMNN 140 S+ +G T+T+++AL L+V S ND A A I + F++ MN Sbjct: 112 VGESSLGLLEGDTLTMEDALTGLMVMSGNDAATAIATTAGAQIDPTSDDPYAVFIEAMNE 171 Query: 141 TSKNLGLSATHFMNAHGV 158 +K LG + T F N HG+ Sbjct: 172 KAKELGCTDTVFENPHGL 189 >gi|308186137|ref|YP_003930268.1| penicillin-binding protein 7 [Pantoea vagans C9-1] gi|308056647|gb|ADO08819.1| penicillin-binding protein 7 [Pantoea vagans C9-1] Length = 315 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ ++PD AS+TKLMTA VV A L I+ + S+ P Sbjct: 49 IVDLTTNKVLFSSHPDRVRPIASITKLMTAMVVLD------AHLPMNEMINVDISQTPEM 102 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + S ++ N + L ++ S N A ++A + + F+Q MN +++LG+ Sbjct: 103 RGVFSRVKLNSQISRRNMMLLALMSSENRAAASLAHAYPGGYRAFIQAMNAKARSLGMKQ 162 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 T ++ G+ + ++A+D+ L Sbjct: 163 TRYVEPTGLSTQ-NVSSAQDLVKL 185 >gi|282600912|ref|ZP_05980106.2| serine-type D-Ala-D-Ala carboxypeptidase family protein [Subdoligranulum variabile DSM 15176] gi|282570823|gb|EFB76358.1| serine-type D-Ala-D-Ala carboxypeptidase family protein [Subdoligranulum variabile DSM 15176] Length = 445 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 29/191 (15%) Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLP-----------YYTLLDTNTGHVIAENYP 47 M++F + +L+ + P + E++ L Y LDTN V+ + Sbjct: 3 MKRFWALFCTVVLAFVLVLPVAAEGESSALSADAPELTAPAGYVVNLDTNI--VVYDKNS 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--------PSNSTFKKG 99 D ASLTK+MT ++ L++ + L T IT++ + Y S + +KG Sbjct: 61 DTQLQAASLTKMMTCLLM---LEQYQDQLDT-ITVTAPSYIYDLIWEKTTNASTADIRKG 116 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGV 158 T TL N L +++ SAN+ A +A+ + FV MNN + +G + T F + G+ Sbjct: 117 ETQTLRNLLYAMLLPSANEAAYIVADYMGGGSIDNFVAMMNNEAAAIGCTGTTFADPCGL 176 Query: 159 VQHGHYTTARD 169 + + TTA+D Sbjct: 177 DER-NVTTAKD 186 >gi|238920707|ref|YP_002934222.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146] gi|238870276|gb|ACR69987.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146] Length = 309 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 12/226 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N VI ++PD AS+TKLMTA V ++ I +K E Sbjct: 49 VVDLNNHQVIYASHPDIQVPIASITKLMTAMVTLDAHPNLDEVIAVDIHRTK---ELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS +T L L ++ S N A +A F++ MN ++ LG++ TH+ Sbjct: 106 FSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMTRTHY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 + G + + ++ARD+ L K +P + + + + Y T Sbjct: 166 VEPTG-LSPDNVSSARDLVKLLQAAK-GYPLIGELSTTETRSVTFTHPTYTETFNNTNHL 223 Query: 211 LGADG-----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L D KTGFT +G + + G + + V+L A + T Sbjct: 224 LRNDKWDIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYT 269 >gi|145523692|ref|XP_001447679.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415201|emb|CAK80282.1| unnamed protein product [Paramecium tetraurelia] Length = 458 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 46/217 (21%) Query: 54 ASLTKLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MT Y FL+EK+ M I I +A +++ G M + L ++ Sbjct: 212 ASITKVMTCYTTLKFLEEKRIDMEAIRIKIPGHAECIDGTSAFLNAGGIMNIKQLLFAMM 271 Query: 113 VKSANDIAVAIAESL-------------------CKTE---------KKFVQHMNNTSKN 144 + S ND A+ ++ ++ C+ E +F+Q MNN ++N Sbjct: 272 LPSGNDAALVLSYAIAFLKTCDNIQRYFNGHFIDCELEIEKNKFQLRTQFLQMMNNHAEN 331 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYM--HYFQIKGLEIKGK- 198 L + T++ + HG+ + + A D+ L +IK +F + + F+ + +GK Sbjct: 332 LKMDKTNYNSVHGLNDALNVSCALDIFKLVEDCIKIK-EFMEIVNTRCFKTYAMTEQGKQ 390 Query: 199 ----KYPNTNWAVGTFLGADGMKTGFT-----CASGF 226 K+ NTN + G G+KTG T C SG+ Sbjct: 391 GTYYKWKNTNKLLKK-EGWQGIKTGITSNAGPCFSGY 426 >gi|229823246|ref|ZP_04449315.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271] gi|229787412|gb|EEP23526.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271] Length = 405 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 29/244 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT----TPITISKNA 86 Y ++D +T V+ E + P+ AS++K+M+ Y+ + ++E K L P I ++ Sbjct: 71 YVVIDQDTHKVLMEREGNKPYPIASMSKIMSVYLTYKAIEEGKIKLDDKIKVPEAIVRDF 130 Query: 87 SEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 ++ SN+ + T+ + L +++ S ND + + +E++ V + Sbjct: 131 TDNAELSNAGLVTDAEYTVQDLLYGIMLASGNDATTLLMSHIYGSEQEAVAAIRRQLDEW 190 Query: 146 GLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 G+ F G + +A D+A+++ I +PQ + Sbjct: 191 GIENYEFYTTSGAPNKYLPESYWIEGSTKDSQNKMSAADVALMAQYITEKYPQILELSSA 250 Query: 191 KGLEI-KGKKYP----NTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + + K +P N N A G G+K+G+T +G V + + + +IA Sbjct: 251 REYTMAKDSDHPIKMANNNLLLEGAQYGRPGVTGLKSGYTDEAGKCFVTTTTENGRKMIA 310 Query: 242 VILG 245 V++G Sbjct: 311 VVMG 314 >gi|5759263|gb|AAD51058.1|AF175293_3 D,D carboxypeptidase [Enterococcus faecium] Length = 356 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 43/238 (18%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++ A + + M + I + ++ S S + KG T+T+ L L Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIEMIQSDS----STAWLMKGDTLTVRQLLIAL 181 Query: 112 IVKSANDIAVAIA----------ESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 ++ S ND A +A +SL + + F+ +N + +LG + + F+ G Sbjct: 182 MLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIEVFMDKVNEKAVDLGATNSKFIAPDGYD 241 Query: 160 QHGHYTTARDMAILSWRIKTDFP-------QYMHYFQI-KGLEIKGKKYPNTNWAVGTFL 211 G YTTA D+AI++ + D P Y Y + G E+ Y N+N L Sbjct: 242 AEGQYTTAYDLAIIA-KACLDNPIISEIVASYSSYEKWPNGREV---TYSNSN----ELL 293 Query: 212 GAD---------GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G+KTG + G IV++A+ ++ I V++G+ + +R + S +L Sbjct: 294 DPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICVVMGST-KESRFQDSVDIL 350 >gi|228965491|ref|ZP_04126577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794221|gb|EEM41739.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 166 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 51/111 (45%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS S Sbjct: 40 LINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETS 99 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 T+ + L L++ N A+A+AE + E F MN K Sbjct: 100 PIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKDK 150 >gi|331014403|gb|EGH94459.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 311 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPP 91 ++D T V+ + PD AS+TKLMTA +V L K++M P+ IS+ E Sbjct: 47 VVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIV---LDAKQSMDEVIPVNISQT-PEMKG 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T Sbjct: 103 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 162 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++ + + + +TARD+ L + +Y ++ E K + + +G F Sbjct: 163 YVEPTSLSVY-NVSTARDLTKLVMAAR----KYPLLSELSTTEQKTVTFRKPTYILG-FS 216 Query: 212 GADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 217 NTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYT 267 >gi|329910749|ref|ZP_08275375.1| Penicillin-binding protein precursor (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Oxalobacteraceae bacterium IMCC9480] gi|327546085|gb|EGF31152.1| Penicillin-binding protein precursor (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 14/227 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D + V+ E + AS+TKLMT+ VV + M+ S + S Sbjct: 96 VMDQSNSKVLFEKNSNVALPIASITKLMTSMVVVESNQNMDEMIE---VTSDDIDREKNS 152 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + GS ++ N L + ++ S N A A+ + FV MN +K+LG++ T + Sbjct: 153 SSRLRVGSILSRSNMLHIALMSSENRAASALGRNYPGGLPAFVGAMNAKAKSLGMNDTRY 212 Query: 153 MNAHGVVQHGHYTTARDMA--ILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAV 207 +++ G+ H + +A+D+A +++ R QY Y G +Y N+N V Sbjct: 213 VDSTGLSSH-NVASAQDLAKLVIAARQHQIIGQYSTDTKYVVKPG--SGALQYSNSNHLV 269 Query: 208 GT-FLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALDRNTR 252 G D KTG+ +G +V + I+G + ++ V L + + +R Sbjct: 270 GNPAWDIDLQKTGYINEAGRCMVMLTNIEG-RPIVMVFLDSKGKQSR 315 >gi|299066620|emb|CBJ37810.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum CMR15] Length = 392 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 6/140 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ ++ Sbjct: 124 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQPMDELLE----ITEDDRDFERN 179 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ S FV MN + LG++ TH Sbjct: 180 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMTDTH 239 Query: 152 FMNAHGVVQHGHYTTARDMA 171 +++++G + + ++A D+A Sbjct: 240 YVDSNG-LSSSNVSSAMDLA 258 >gi|324497314|gb|ADY39464.1| D-alanyl-D-alanine endopeptidase [bacterium enrichment culture clone P69-9E] Length = 258 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 26/229 (11%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96 NT VI ++PD AS+TKLMTA VV A L + + S P + Sbjct: 1 NTNKVIYASHPDLVRPIASITKLMTAMVVLD------AHLPLDEKLKVDISHTPEMKGIY 54 Query: 97 KK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + S ++ N L L ++ S N A ++A F++ MN +K LG++ TH++ Sbjct: 55 SRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTNTHYV 114 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 G + + +TARD+ L K QY Q+ + + N + + F Sbjct: 115 EPTG-LSINNVSTARDLTKLLIASK----QYPLIGQLSTTREEMATFANPAYTL-PFRNT 168 Query: 214 DGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G +V + + + V++ A + T Sbjct: 169 NHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYT 217 >gi|213423411|ref|ZP_03356398.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 160 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ GF Sbjct: 30 LNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 83 >gi|104782270|ref|YP_608768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas entomophila L48] gi|95111257|emb|CAK15977.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and 8 [Pseudomonas entomophila L48] Length = 308 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D NT + ++ D AS+TKLMTA VV ML+ +TI+ N E Sbjct: 48 LIDLNTNQELYSSHADRVRPIASVTKLMTAMVVLDAKLPMDEMLS--MTIANN-PEMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS + L + ++ S N A ++A F++ MN +++LG+S T + Sbjct: 105 YSRVRLGSELNRRETLLITLMSSENRAANSLANHYPGGYGAFIKAMNAKARSLGMSHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TA+D+A L + +Y ++ K + N+ +G F Sbjct: 165 VEPTGLSTL-NVSTAQDLAKLLMASR----KYPMLSELSTTREKTVAFRKPNYTLG-FRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 D + KTGFT +G +V ++ + VIL A + T Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAYGKYT 268 >gi|225023959|ref|ZP_03713151.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC 23834] gi|224942984|gb|EEG24193.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC 23834] Length = 314 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +G ++ + D AS++KLM A VV L ++ M T + Sbjct: 78 IMNGRSGEILYQKGIDQVRPIASISKLMAAMVV---LDARQNMNETLEITEAEIDRLKGT 134 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S G+T+T L L ++ S N A+A + F+ MN +++LG+ T F Sbjct: 135 GSRLSVGTTLTRREMLHLGLMSSENRAIHALARNYPGGLPAFMSAMNRKAQSLGMQQTRF 194 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYPNTNWAV 207 + G + + +TARD++++ R ++P + + + ++Y N+N V Sbjct: 195 YDPTG-LDFRNVSTARDLSLMV-RAAHEYPLIRQFSTSNSGSAQTSNGRVQQYRNSNALV 252 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 GT+ KTG+ SG ++V A Q LI V+L + TR Sbjct: 253 REGTW-NISLQKTGYIRESGRSMVLYANVQRQPLIIVLLNSPSPTTR 298 >gi|290958940|ref|YP_003490122.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] gi|260648466|emb|CBG71577.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] Length = 282 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 22/234 (9%) Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLD 105 P S TK+MTA VV S +K L +T++ S+Y S++ G +T+ Sbjct: 49 PRATGSTTKIMTAKVVLS---QKNLNLDAKVTVAGAYSDYIVKNDASSARLIVGDKVTVR 105 Query: 106 NALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 L L++ S D A A+A+ K F+ MN+T+K+LG++ T F + G+ Sbjct: 106 QLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNSTAKSLGMTNTKFDSFDGIS 165 Query: 160 QHGHYTTARDMAILSWRIKTD-----FPQYMHYFQIKGLEIKGKKY---PNTNWA-VGTF 210 + ++ +D+ L+ + + + + Q + G +Y NTN + T+ Sbjct: 166 NGTNQSSPKDLTTLARSVMKNSTFKTIVKTVTTKQKVTTKSGGYRYYTWENTNKPLLTTY 225 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G G+KTG + + +V +A + +++ +L A + R + LL+ GF Sbjct: 226 NGTIGIKTGSGTEAKYCLVFAATRNGKTIYGTVLTATSADARLADAKKLLNYGF 279 >gi|313631512|gb|EFR98800.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL N1-067] Length = 305 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 22/142 (15%) Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYT---------TARDMAIL 173 + +EK+FV MN ++ L L F+NA G+ ++ G TAR MA L Sbjct: 2 IAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 61 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWAVGTFL----GADGMKTGFTCAS 224 + + D+P+ + E + N NW + + G DG+KTG T + Sbjct: 62 AKHLINDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 121 Query: 225 GFNIVASAIQGDQSLIAVILGA 246 G + A+A+Q +I V+L A Sbjct: 122 GMCLTATAVQDGMRVITVVLHA 143 >gi|17546328|ref|NP_519730.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum GMI1000] gi|17428625|emb|CAD15311.1| putative d-alanyl-d-alanine-endopeptidase (penicillin-binding protein) [Ralstonia solanacearum GMI1000] Length = 375 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ ++ Sbjct: 107 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQPMDELLE----ITEDDRDFERN 162 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ S FV MN + LG++ TH Sbjct: 163 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMTDTH 222 Query: 152 FMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTN---- 204 +++++G + + ++A D+A I+ K + + G+ Y NTN Sbjct: 223 YVDSNG-LSSSNVSSAMDLAKIVMAAYKVPLIRQFTTTAEHTVNANGRTLHYVNTNRLVR 281 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A ++++ V L + TR Sbjct: 282 GGEWDIGL------QKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTR 326 >gi|239981571|ref|ZP_04704095.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074] gi|291453424|ref|ZP_06592814.1| predicted protein [Streptomyces albus J1074] gi|291356373|gb|EFE83275.1| predicted protein [Streptomyces albus J1074] Length = 907 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 14/198 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFK--KGSTMTLDNAL 108 S+ K+MTAY + KK +TI A E ST K +G +++ A+ Sbjct: 584 GSVAKVMTAYTILREHPVKKGTEGERLTIDAKAQQDYENAGQESTVKVTEGQKISVKEAI 643 Query: 109 KLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + +++ SAN+IA +A E FV+ MN + LG+ T + + G+ + ++A Sbjct: 644 EAIMLPSANNIARQLARWDSDGDEAAFVEKMNKYAAELGMENTTYTDPSGLKET-TVSSA 702 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 D L + +F + ++ E G++ N N+ V G G+KTG T +G Sbjct: 703 EDQVKLGKAV-MEFETFSSVVRLPNYESTTSGQREKNYNFLV-PMYGVVGIKTGSTTKAG 760 Query: 226 FNIVASA---IQGDQSLI 240 N++ +A + G++ LI Sbjct: 761 GNLLFAAEKVVDGEKQLI 778 >gi|213160841|ref|ZP_03346551.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 199 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ GF Sbjct: 32 LNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 85 >gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298496602|gb|EFI31896.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 330 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 36/242 (14%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 VIA P PAS+ K++ A + L K++ T + ++ G Sbjct: 32 VIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV-----GVNTGG 86 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T T++ L L++ S ND A A+A L + +N + LG T G+ Sbjct: 87 TYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDTRVATPSGLDG 145 Query: 161 HGHYTTARDMAIL---SWR-------IKT---DFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 G T+A D+ + +W+ + T DFP + + G E++ N N + Sbjct: 146 PGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDH---PGYELE-----NDNQLL 197 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-----SASLLSM 262 + GA G KTG+T +G V +A + + L+ V+L TR + +A LL Sbjct: 198 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLL----HGTRQPIPPWEQAAHLLDY 253 Query: 263 GF 264 GF Sbjct: 254 GF 255 >gi|120597728|ref|YP_962302.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. W3-18-1] gi|146294135|ref|YP_001184559.1| D-alanyl-D-alanine endopeptidase [Shewanella putrefaciens CN-32] gi|120557821|gb|ABM23748.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella sp. W3-18-1] gi|145565825|gb|ABP76760.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Shewanella putrefaciens CN-32] gi|319427478|gb|ADV55552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella putrefaciens 200] Length = 322 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + P+ AS+TKLMTA V L I+ +K E Sbjct: 60 VVDLKTNEVLYSSNPNAVMPIASVTKLMTAMVTLDAKLPMDQKLAVNISDTK---EMRGV 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS +T L L ++ S N A ++A K F++ MN +K LG+ T + Sbjct: 117 YSRVRIGSEITRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNTRY 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--MHYFQIKGLEIKGKKYP----NTN-- 204 + G+ H + ++A D+ +L + +P + + K + KY NTN Sbjct: 177 VEPTGL-SHKNVSSASDLIVL-LKASEKYPMLGELSATEKKTVTFGKPKYSLDFRNTNRL 234 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 W + KTGFT A+G +V + + V+L A + T Sbjct: 235 VYKDNWNIHL------TKTGFTNAAGHCLVMRTEMAKRQVAFVVLDAYGKYT 280 >gi|114048686|ref|YP_739236.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-7] gi|113890128|gb|ABI44179.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-7] Length = 318 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 32/236 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 ++D T ++ + PD AS+TKLMTA V + K + + I+ N + E Sbjct: 56 VVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTL----DAKLPMDEKLAININDTKEMRG 111 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ + L L ++ S N A ++A K F++ MN +K+LG+ T Sbjct: 112 VYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKSLGMKNTR 171 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GK-----KYPN 202 ++ G+ + + ++ARD+ +L + +P Q+ E K GK + N Sbjct: 172 YVEPTGLSEK-NVSSARDLVVL-LKASEGYPM---LGQLSSTEKKTVTFGKPKYSLDFRN 226 Query: 203 T-------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 T NW + KTGFT +G +V + + V+L A + T Sbjct: 227 TNRLVYKDNWNIHL------TKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYT 276 >gi|319779426|ref|YP_004130339.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9] gi|317109450|gb|ADU92196.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9] Length = 389 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLI 112 AS++KLMTAYVV + L ITIS+ ++ + S G+ +T AL L + Sbjct: 171 ASISKLMTAYVVI----KSGQPLDEIITISEEDVDHLKGTGSRLTIGTQLTRKEALLLAL 226 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ + FV+ MN T+++LG++ T ++ G+ + ++A+D+A Sbjct: 227 MSSENRAANALGRHYPGGLEAFVKEMNATARSLGMTRTRYVEPTGLSPM-NVSSAQDLAT 285 Query: 173 L 173 L Sbjct: 286 L 286 >gi|145628720|ref|ZP_01784520.1| adenylate kinase [Haemophilus influenzae 22.1-21] gi|145638727|ref|ZP_01794336.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII] gi|144979190|gb|EDJ88876.1| adenylate kinase [Haemophilus influenzae 22.1-21] gi|145272322|gb|EDK12230.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII] gi|301169066|emb|CBW28663.1| penicillin-binding protein 7 homolog precursor [Haemophilus influenzae 10810] gi|309750217|gb|ADO80201.1| Putative penicillin-binding protein 7 [Haemophilus influenzae R2866] Length = 292 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 20/228 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P S+A++ Y + D V+ + PD AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFSLAQS-----YVVYDFTHNRVLESHAPDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F+ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY----PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 + I+ K+ NTN V A KTG+ SG+N+V Sbjct: 175 ---LNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|240947887|ref|ZP_04752327.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus minor NM305] gi|240297849|gb|EER48285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus minor NM305] Length = 275 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V+ P+ AS+TKLMTA V FL E I+I+ ++Y Sbjct: 5 YVVYDFTHDRVLESRSPNSVQPIASVTKLMTANV---FL-ENNQNRNCAISITDEDADYI 60 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 ST + ++ LK ++V S N A A++ + + +F+Q MN ++ LG+ + Sbjct: 61 KGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAGMSRTQFIQKMNEKARELGMRS 120 Query: 150 THFMNAHGVVQHGHYTTARDMAILS--------WRIKTDF-PQYMHYFQIKGLEIKGKKY 200 T F ++ G + + ++ D+ L+ +I ++ Y+H + K + +K Sbjct: 121 TRFSDSSG-LSSANVSSVMDLVKLAKYSLGKSQIQILSNMAAAYIHAGR-KNIFVK---- 174 Query: 201 PNTNWAVGTFLGADGM-KTGFTCASGFNIV 229 NTN V L + + KTG+ SG+N+V Sbjct: 175 -NTNKLVREELFSAAINKTGYIRESGYNLV 203 >gi|300715952|ref|YP_003740755.1| penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase) [Erwinia billingiae Eb661] gi|299061788|emb|CAX58904.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase) [Erwinia billingiae Eb661] Length = 315 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 8 IAMAMLSNIFPFLS--IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +A + L+++ P + IA + + ++D NT VI ++PD AS+TKLMT V Sbjct: 26 VASSKLADVAPIVQPQIASGSAM----IVDLNTNKVIFASHPDLVRPMASITKLMTVMVT 81 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ML I+ + E S + S ++ N + L ++ S N A ++A Sbjct: 82 LDAHLPMDEMLNVDIS---HTPEMRGVYSRVRLNSEISRKNMMLLALMSSENRAAASLAH 138 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 F++ MN +++LG++ TH++ G+ + +TARD+ Sbjct: 139 HYPGGYDAFIRAMNAKAQSLGMTHTHYVEPTGLSIE-NVSTARDL 182 >gi|145594991|ref|YP_001159288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica CNB-440] gi|145304328|gb|ABP54910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica CNB-440] Length = 386 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 16/265 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-ASEY 89 + + D +G V+ P PAS+ KL+ A + L TT + ++++ + Sbjct: 73 WIVADLGSGQVLGGCGPHEHRTPASVQKLLLAVALLPRLDP-----TTVVEVTRDDLHDL 127 Query: 90 PPSNSTFK--KGSTMTLDNALKLLIVKSANDIA--VAIAESLCKTEKKFVQHMNNTSKNL 145 P++S +G T++ L+++S ND A +A VQ MN+ + L Sbjct: 128 DPASSLMGVVEGGRYTVEELWLGLLLESGNDAANVLARLGGGGAGRPGGVQVMNDEAGRL 187 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYMHYFQIKGLEIKGKK---Y 200 S TH + G+ G YT+A D+A+++ + DF +Y+ G+ Sbjct: 188 RASQTHAVTPSGLDGAGQYTSAYDLALIARAAFERDDFRRYIATRTASLPSTPGRSALAL 247 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA-SL 259 N +G++ G G KTGFT + V A + ++L +LGA + + A +L Sbjct: 248 TGDNTLLGSYPGMLGGKTGFTDLARQTYVGVAERDGRTLAVTLLGAENAPLGSLGEATAL 307 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQN 284 L+ GF D + + D +++ Sbjct: 308 LNWGFALAPDEAVGHLVTPDQGKKD 332 >gi|332528109|ref|ZP_08404140.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] gi|332112680|gb|EGJ12473.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] Length = 353 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 24/211 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS+TKLMT +V E + L +TI+++ + S+S + G+ +T L L + Sbjct: 130 ASITKLMTGLLV----TEAQQPLDEVLTITQDDVDTEKGSHSRLQVGTQLTRGEMLHLAL 185 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A+ FVQ MN +K LG+ T ++ G+ + + ++ARD+A+ Sbjct: 186 MSSENRAANALGRHYPGGLSAFVQAMNAKAKLLGMHDTRYVEPTGLSSN-NQSSARDLAV 244 Query: 173 L-----------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 L TD + Q++ G N +W +G KTG+ Sbjct: 245 LVKAAYQHPILRELSTSTDASVAVGRRQLQFHTTNG-LVRNPSWEIGL------QKTGYI 297 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +G +V A ++LI V+L + + +R Sbjct: 298 SEAGRCLVMQAQLAGRNLIMVLLDSAGKYSR 328 >gi|330999158|ref|ZP_08322877.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella excrementihominis YIT 11859] gi|329575358|gb|EGG56902.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella excrementihominis YIT 11859] Length = 388 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 33/227 (14%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L ++ T L Y D +T V+ E D P AS+TKLMTA V+ E L Sbjct: 141 LGLSSTAVLAY----DMDTNQVLYEKNADQPLPIASITKLMTALVIV----ESGVNLDDK 192 Query: 80 ITISKNASEYPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T+++ ++ PS+ S + G ++ AL L ++ S N A +A + + +F++ Sbjct: 193 FTVTRE--DFVPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKE 250 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFPQYMHYFQ 189 MN + LG+ + F ++ G + + + ++A D++ L R + P+ F+ Sbjct: 251 MNIKAALLGMKDSVFYDSIG-LNNDNRSSAVDLSYLITGASEYALIRELSTTPE--ASFR 307 Query: 190 IKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 I E+ + + +W + + KTG T A+G+ +V A Sbjct: 308 IGKREVISSTTNRLIKDEDWDI------ELQKTGLTTAAGYCMVMQA 348 >gi|271962810|ref|YP_003337006.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM 43021] gi|270505985|gb|ACZ84263.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM 43021] Length = 369 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D TG V+A P + PAS K +TA LT + K+ P Sbjct: 57 YVVADAETGEVLAAKDPHGRYLPASTLKALTA-------------LTLIPKLDKDLKVKP 103 Query: 91 PSNSTFKKGSTM--------TLDNALKLLIVKSANDIAVAIAES---LCKTEKKFVQHMN 139 S + ++GS + T+D+ K L++ S ND A+A+AE+ L KT ++ MN Sbjct: 104 SSRAVNEEGSAVGLVSKPIYTVDDLFKALMLVSGNDCAMALAEANGGLAKT----LRDMN 159 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW------------RIKTD-FPQYMH 186 ++ L T G+ + G ++A D+A+++ K D FP Sbjct: 160 TEAQRLQAFDTVAKTPSGLDKPGQSSSAYDLALIARAGLANDDFQRYISTKVDKFPAPKG 219 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 Y++I N N + + G G+K G+T + + V +A + ++I ++ Sbjct: 220 YYEIG----------NHNKLLWRYKGMIGVKNGWTSKALGSFVGAARRNGHTIIVSVM 267 >gi|303256971|ref|ZP_07342985.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales bacterium 1_1_47] gi|302860462|gb|EFL83539.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales bacterium 1_1_47] Length = 377 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 33/227 (14%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L ++ T L Y D +T V+ E D P AS+TKLMTA V+ E L Sbjct: 130 LGLSSTAVLAY----DMDTNQVLYEKNADQPLPIASITKLMTALVIV----ESGVNLDDK 181 Query: 80 ITISKNASEYPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T+++ ++ PS+ S + G ++ AL L ++ S N A +A + + +F++ Sbjct: 182 FTVTRE--DFVPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKE 239 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFPQYMHYFQ 189 MN + LG+ + F ++ G + + + ++A D++ L R + P+ F+ Sbjct: 240 MNIKAALLGMKDSVFYDSIG-LNNDNRSSAVDLSYLITGASEYALIRELSTTPE--ASFR 296 Query: 190 IKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 I E+ + + +W + + KTG T A+G+ +V A Sbjct: 297 IGKREVISSTTNRLIKDEDWDI------ELQKTGLTTAAGYCMVMQA 337 >gi|289805917|ref|ZP_06536546.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 169 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ GF Sbjct: 2 LNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 55 >gi|260662683|ref|ZP_05863577.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum 28-3-CHN] gi|260552764|gb|EEX25763.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum 28-3-CHN] Length = 417 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 45/248 (18%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEY 89 +D TG V+ E + AS+ K++T V+ +++ K I ISK A+++ Sbjct: 44 IDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDW 103 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN +G + T+ + ++ +++ SA+ A A+A + + F Q M +K G++ Sbjct: 104 RFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTD 163 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ + + +A+D+A ++ + +P LEI Sbjct: 164 AKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVEKYPSV--------LEI 215 Query: 196 KGKKYPN-------------------TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +K+ N N A T DG+KTG T +SG+ V + Sbjct: 216 TKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNG 275 Query: 237 QSLIAVIL 244 + LI V+L Sbjct: 276 RRLITVVL 283 >gi|65319857|ref|ZP_00392816.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 151 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SEYP 90 L+D N+G V+ + ++ A+L+KLMT Y+V L + L + IS +E Sbjct: 40 LIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETS 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 P T K +T+ + L L++ N +A+AE + E F Q MN N Sbjct: 100 PIQVTSKDKTTVR--DLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNQKQNN 151 >gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|315263392|gb|ADU00134.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length = 277 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 9/214 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A P + PAS K++ A V L+ +++ ++ Sbjct: 48 WLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSF-----ARANESHTKIE 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T + +++ S ND A + + L ++ V MN + +G +T Sbjct: 103 CSCAGLTPGQAYTTAQLVSAILMVSGNDAATMLGDML-GGQRVAVAAMNRKAALVGARST 161 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + G+ G TT D+A++ R +P + GK N N + Sbjct: 162 KASSTSGLDGPGWESVTTPHDLAVI-MRAALKYPLIAQIMRSPTAPFPGKTLHNQNELLS 220 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + G G KTGFT + V +A +G++ L+ V Sbjct: 221 RYPGDLGGKTGFTNLARKTYVGAAQRGNRRLVVV 254 >gi|299783572|gb|ADJ41570.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum CECT 5716] Length = 421 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 45/248 (18%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEY 89 +D TG V+ E + AS+ K++T V+ +++ K I ISK A+++ Sbjct: 48 IDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDW 107 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN +G + T+ + ++ +++ SA+ A A+A + + F Q M +K G++ Sbjct: 108 RFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTD 167 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ + + +A+D+A ++ + +P LEI Sbjct: 168 AKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVEKYPSV--------LEI 219 Query: 196 KGKKYPN-------------------TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +K+ N N A T DG+KTG T +SG+ V + Sbjct: 220 TKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNG 279 Query: 237 QSLIAVIL 244 + LI V+L Sbjct: 280 RRLITVVL 287 >gi|184156063|ref|YP_001844403.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO 3956] gi|183227407|dbj|BAG27923.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO 3956] Length = 417 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 45/248 (18%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEY 89 +D TG V+ E + AS+ K++T V+ +++ K I ISK A+++ Sbjct: 44 IDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDW 103 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN +G + T+ + ++ +++ SA+ A A+A + + F Q M +K G++ Sbjct: 104 RFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTD 163 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ + + +A+D+A ++ + +P LEI Sbjct: 164 AKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVEKYPSV--------LEI 215 Query: 196 KGKKYPN-------------------TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +K+ N N A T DG+KTG T +SG+ V + Sbjct: 216 TKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNG 275 Query: 237 QSLIAVIL 244 + LI V+L Sbjct: 276 RRLITVVL 283 >gi|227326961|ref|ZP_03830985.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 315 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D H++ + PD AS+TKLMTA VV + +++ I+ +K E Sbjct: 48 VVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQPLDEIISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A + F++ MN ++ LG++ T + Sbjct: 105 YSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---------GKKYPNT 203 + G + + +TARD+ L K QY Q+ + K + + NT Sbjct: 165 VEPTG-LSINNVSTARDLTKLLIASK----QYPLLGQLSTTQEKTATFSHPAYSQPFRNT 219 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W++ KTGFT +G +V + + + V+L A + T Sbjct: 220 NHLVYKADWSIQL------TKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYT 268 >gi|227113033|ref|ZP_03826689.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 315 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D H++ + PD AS+TKLMTA VV + +++ I+ +K E Sbjct: 48 VVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQPLDEIISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A + F++ MN ++ LG++ T + Sbjct: 105 YSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---------GKKYPNT 203 + G + + +TARD+ L K QY Q+ + K + + NT Sbjct: 165 VEPTG-LSINNVSTARDLTKLLIASK----QYPLLGQLSTTQEKTATFSHPAYSQPFRNT 219 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W++ KTGFT +G +V + + + V+L A + T Sbjct: 220 NHLVYKADWSIQL------TKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYT 268 >gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium gilvum PYR-GCK] gi|145217245|gb|ABP46649.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium gilvum PYR-GCK] Length = 277 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 9/214 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A P + PAS K++ A V L+ +++ ++ Sbjct: 48 WLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSF-----ARANESHTKIE 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T + +++ S ND A + + L ++ V MN + +G +T Sbjct: 103 CSCAGLTPGQAYTTAQLVSAILMVSGNDAATMLGDML-GGQRVAVAAMNRKAALVGARST 161 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + G+ G TT D+A++ R +P + GK N N + Sbjct: 162 KASSTSGLDGPGWESVTTPHDLAVI-MRAALKYPLIAQIMRSPTAPFPGKTLHNQNELLS 220 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + G G KTGFT + V +A +G++ L+ V Sbjct: 221 RYPGDLGGKTGFTNLARKTYVGAAQRGNRRLVVV 254 >gi|213613286|ref|ZP_03371112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 137 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A + Sbjct: 73 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 130 Query: 91 PSNSTFK 97 N FK Sbjct: 131 TGNPVFK 137 >gi|29830324|ref|NP_824958.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] gi|29607435|dbj|BAC71493.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] Length = 888 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 19/205 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI-------SKNASEYPPSNSTFKKGSTMTLDN 106 AS+ K+MTAYV+ K IT+ SKN E S + KG T Sbjct: 562 ASVAKIMTAYVILEEHPLKGTAAGDKITVDQQAEDESKNEDE---STAAMTKGQKFTERQ 618 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 L++L++ S N+ A +A +E FV MN +K LG++ + + + G+ + +T Sbjct: 619 MLQMLMIPSGNNAARLLARWDSDSET-FVGKMNAAAKKLGMTNSTYTDPSGL-EKTTVST 676 Query: 167 ARDMAILSWRI--KTDFPQY--MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 A D L+ + K F M I GL KG Y N + V +G G+KTG + Sbjct: 677 ATDQLKLAKAVMQKEVFRSIVGMAKADIPGL--KGTIYNNNDLLV-KQVGVIGLKTGSST 733 Query: 223 ASGFNIVASAIQGDQSLIAVILGAL 247 +G N+V +A + + I GA+ Sbjct: 734 PAGGNLVWAATKTVNGKVRTIYGAV 758 >gi|322833771|ref|YP_004213798.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp. Y9602] gi|321168972|gb|ADW74671.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp. Y9602] Length = 310 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P + IA + + ++D + VI PD ASLTKLMTA V A Sbjct: 32 VAPIVQIASGSAM----VVDLKSHEVIYSRNPDEVRPIASLTKLMTAMVTLD------AN 81 Query: 76 LTTPITISKNASEYPPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 L I+ + S P F + S +T ++L ++ S N A ++A Sbjct: 82 LPLDEVINIDISNTPEMRGVFSRVKLNSEITRRQMIQLALMSSENRAAASLAAHYPGGYS 141 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 F+ MN +K+LG++ TH+ G+ + +TARD+ L Sbjct: 142 AFINAMNAKAKSLGMTHTHYAEPTGLSPR-NVSTARDLTRL 181 >gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia bronchialis DSM 43247] gi|262085061|gb|ACY21029.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia bronchialis DSM 43247] Length = 411 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++GHVIA P + PAS K++ A V L + T+ ++E Sbjct: 94 WLIADVDSGHVIAAKDPHGRYRPASTIKVLLALVALRDLHLDDVVEP---TVEDWSTEG- 149 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T + L L++ S ND A A++ SL TE + MN + +LG T Sbjct: 150 -DSCGMGPGGHYTTRDLLTGLLMVSGNDCANALSRSLGGTEATLAK-MNELAASLGAHDT 207 Query: 151 HFMNAHGVVQHGHYTTARDMAI 172 + G+ G T+ DMA+ Sbjct: 208 RAASPSGLDAAGMSTSPYDMAL 229 >gi|330827968|ref|YP_004390920.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas veronii B565] gi|328803104|gb|AEB48303.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas veronii B565] Length = 284 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + + TG VI+E + ASLTKLMTA VV MLT + + Sbjct: 33 FVVANHRTGEVISERNGNRVMPIASLTKLMTALVVLDANLRLNEMLT---VTNADIDRIK 89 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S GS ++ L + ++ S N A A+A ++ FV+ MN ++ LG+ T Sbjct: 90 GTGSRLAIGSRLSRAEMLHIALMSSENRAASALARHYPGGQRAFVEAMNAKARMLGMWNT 149 Query: 151 HFMNAHGV 158 + ++ G+ Sbjct: 150 RYADSTGL 157 >gi|297196040|ref|ZP_06913438.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] gi|297153041|gb|EFH32114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] Length = 367 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 26/260 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A + PAS K + A L + T ++ Sbjct: 45 WLVADADTGDVLAAHDAHRRLPPASTIKTLFALTALPHLADAPPHKVTEEELAGVGEGS- 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T T+D+ + + + S ND +AE + + M ++ LG T Sbjct: 104 -SLVGIAPGRTYTMDDLWRGVFLSSGNDAVRVLAE-MNGGWAATAEQMQAKARALGAFDT 161 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVG 208 H ++ G + G ++A D+A+ TD PQ+ Y G + + W G Sbjct: 162 HVVSPDGYDEPGQVSSAFDLAVFGRAGLTD-PQFASYASTVDAPFPGGTRDDGSPTWTYG 220 Query: 209 T------FLGADGM---------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 GADG+ K G+T +G +VA+A + ++L+ +L + Sbjct: 221 IRNTNRLLTGADGVERYPGIIGVKNGYTSNAGNTLVAAARRDGRTLVVTVLNP-QSGGGH 279 Query: 254 KV---SASLLSMGFYNKTDR 270 KV + SLL GF + DR Sbjct: 280 KVYEEARSLLDWGF-SAADR 298 >gi|188534373|ref|YP_001908170.1| D-alanyl-D-alanine endopeptidase [Erwinia tasmaniensis Et1/99] gi|188029415|emb|CAO97292.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase) [Erwinia tasmaniensis Et1/99] Length = 316 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI E++PD AS+TKLMT V ML ++ + E Sbjct: 49 IVDLNSNKVIYESHPDRVRPIASITKLMTVMVALDAHLPLDEMLKVDVS---HTPEMRGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N + L ++ S N A ++A F++ MN ++ LG+S T + Sbjct: 106 YSRVRLNSEISRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G+ + +TARD++ L Sbjct: 166 VEPTGLSIE-NVSTARDLSKL 185 >gi|296136730|ref|YP_003643972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas intermedia K12] gi|295796852|gb|ADG31642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas intermedia K12] Length = 493 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ D ASLTKLMTA V+ L + M + S Sbjct: 218 VVDEGTDRVLLSKNADTARPIASLTKLMTAAVI---LDAHQPMDQVIEITDADIDTLKWS 274 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+ +T + LKL ++ S N A A+A + F+ MN +++LG++ T + Sbjct: 275 SSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAFIPAMNAKARSLGMNTTRY 334 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G+ + +TA D+A+L Sbjct: 335 VEPTGLSPQ-NESTAHDLALL 354 >gi|91788192|ref|YP_549144.1| murein-DD-endopeptidase [Polaromonas sp. JS666] gi|91697417|gb|ABE44246.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Polaromonas sp. JS666] Length = 353 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 28/234 (11%) Query: 33 LLDTNTGHVI-AENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 ++D +T V+ ++N DH P ASLTKLMT ++ K + IT++++ + Sbjct: 102 VIDQDTREVLFSKN--DHAVLPIASLTKLMTGVIISG----AKLPMDEMITVTQDDVDTE 155 Query: 91 P-SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+S + G+T+T L L ++ S N A A+ + FV MN +K LG++ Sbjct: 156 KGSSSRLRVGTTLTRGELLHLALMSSENRAAHALGRTYPGGMPTFVNLMNAKAKMLGMND 215 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTN- 204 T ++ G+ + ++A+D+A L D P G ++ GK+ Y NTN Sbjct: 216 TSYVEPTGLSSR-NQSSAQDLATLVNAAHGD-PVLRELSTSTGYQVAVGKRTLQYNNTNR 273 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V + LI V L + + +R Sbjct: 274 LVKNPDWDIGL------QKTGYISEAGQCLVMQTKIAGRKLIMVFLDSAGKLSR 321 >gi|227832361|ref|YP_002834068.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum ATCC 700975] gi|227453377|gb|ACP32130.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum ATCC 700975] Length = 613 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG +IA P+ + PAS+ K + A VV L L IT + + + Sbjct: 300 WMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIEELP-----LDQRITATLDDASVE 354 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S T++ L+ L++ S ND A A+A+++ E+ + +N ++ +G +T Sbjct: 355 GSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEAL-EKVNAKAQEIGTRST 413 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIK--------------TDFPQYMHYFQIKGLEIK 196 + G+ G T+A D++++ +R DFP + E+ Sbjct: 414 VAASYSGLDAAGMSTSAADISLI-YRAAFANDTFARIVDTEHVDFPGWG--------EMP 464 Query: 197 GKKYPNTNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 G + N N G FL DG+ KTG+T + V + + + L AV+L Sbjct: 465 GYELWNDN---GLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLL 512 >gi|5353565|gb|AAD42182.1|AF130997_3 D,D carboxypeptidase [Enterococcus faecium] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 35/234 (14%) Query: 53 PASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS K++ A + + M + I + ++ S S + KG T+T+ L L Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIGMIQSDS----STAWLMKGDTLTVRQLLIAL 181 Query: 112 IVKSANDIAVAIA----------ESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVV 159 ++ S ND A +A SL + + F+ +N + LG + + F+ G Sbjct: 182 MLPSGNDAAYTLAVNTGKAIAGDNSLTSQQAIEVFMDKVNEKAVALGATNSKFVAPDGYD 241 Query: 160 QHGHYTTARDMAILSWRIKTDFP-------QYMHYFQIK-GLEIKGKKY-----PNTNWA 206 G YTTA D+AI++ + D P Y Y + G E+ PN+ + Sbjct: 242 AEGQYTTAYDLAIIA-KACLDNPIISEIVASYSSYEKWSNGREVTYNNSNELLDPNSPYY 300 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 + G+KTG + G IV++A+ ++ I V++G+ + +R + S +L Sbjct: 301 RPEVI---GLKTGTSSLGGACIVSAAVMDGETYICVVMGST-KESRFQDSVDIL 350 >gi|77459922|ref|YP_349429.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf0-1] gi|77383925|gb|ABA75438.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens Pf0-1] Length = 312 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 39/274 (14%) Query: 8 IAMAMLSNIF--------PFLSIAETNKLPY-----------YTLLDTNTGHVIAENYPD 48 I +++LS +F P ++ AET P L+D T VI + PD Sbjct: 3 IRLSILSLVFAFSGTLLTPTVNAAETTAAPRDASQLKIASGSALLMDLQTNKVIYSSNPD 62 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 AS++KLMT VV + + I+ + E S K S + L Sbjct: 63 VVVPIASVSKLMTGLVVVEAHQNMDEWIDVDIS---HTPEMKGVFSRVKLRSELPRREML 119 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + ++ S N A ++A F+ MN +K LG+++THF+ G+ + + +TAR Sbjct: 120 LIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHFVEPTGLSER-NVSTAR 178 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----------K 217 D++ L + Q + ++ + K + N+ +G F D + K Sbjct: 179 DLSKL---LVAAHKQPL-LIELTTTKEKTVSFRKPNYTLG-FRNTDHLVNKADWDIRITK 233 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 TGFT +G +V ++ + VIL A + T Sbjct: 234 TGFTNPAGHCLVLVTRMANRPVALVILDAFGKYT 267 >gi|300691350|ref|YP_003752345.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07] gi|299078410|emb|CBJ51061.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07] Length = 374 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 6/140 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +G V+ + AS+TKLMTA VV + +L I+++ +Y Sbjct: 108 VMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQPMDELLE----ITEDDRDYERN 163 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + G+ +T ++ L L ++ S N A A+ + FV MN + LG++ TH Sbjct: 164 TGSRLRYGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAHELGMNDTH 223 Query: 152 FMNAHGVVQHGHYTTARDMA 171 +++++G + + ++A D+A Sbjct: 224 YVDSNG-LSSSNVSSATDLA 242 >gi|117921730|ref|YP_870922.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. ANA-3] gi|117614062|gb|ABK49516.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella sp. ANA-3] Length = 318 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 ++D T ++ + PD AS+TKLMTA V + K + + I+ N + E Sbjct: 56 VVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTL----DAKLPMDEKLAININDTKEMRG 111 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T Sbjct: 112 VYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNTR 171 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GK-----KYPN 202 ++ G+ + + ++ARD+ +L + +P Q+ E K GK + N Sbjct: 172 YVEPTGLSEK-NVSSARDLVVL-LKASEGYPM---LGQLSSTEKKTVTFGKPKYSLDFRN 226 Query: 203 T-------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 T NW + KTGFT +G +V + + V+L A + T Sbjct: 227 TNRLVYKDNWNIHL------TKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYT 276 >gi|113969172|ref|YP_732965.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-4] gi|113883856|gb|ABI37908.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-4] Length = 318 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPP 91 ++D T ++ + PD AS+TKLMTA V + K + + I+ N + E Sbjct: 56 VVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTL----DAKLPMDEKLAININDTKEMRG 111 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T Sbjct: 112 VYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNTR 171 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GK-----KYPN 202 ++ G+ + + ++ARD+ +L + +P Q+ E K GK + N Sbjct: 172 YVEPTGLSEK-NVSSARDLVVL-LKASEGYPM---LGQLSSTEKKTVTFGKPKYSLDFRN 226 Query: 203 T-------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 T NW + KTGFT +G +V + + V+L A + T Sbjct: 227 TNRLVYKDNWNIHL------TKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYT 276 >gi|329934220|ref|ZP_08284299.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] gi|329305816|gb|EGG49671.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus M045] Length = 341 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 14/202 (6%) Query: 54 ASLTKLMTAYVVFS----FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+MTA+V+ E ++T T + + S+ ++G+ ++ L+ Sbjct: 105 ASVTKVMTAWVILRDRPLRAGEDGPLVTVDRTAANESFSGVESSVPVREGTRLSERRLLE 164 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S N+IA +A +++ FV MN +++LG+ T + A G ++ +T+ D Sbjct: 165 LLLIPSGNNIARLLARWNAGSQEAFVMKMNRAARDLGMRHTTYTGASG-IEPTTTSTSAD 223 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 L+ R+ D + + G + G NTN +GT G G+KTG + +G Sbjct: 224 QLRLARRVMHDE-VFRTVVAMPGTTVPGVPGTIRNTNTLLGTA-GVIGLKTGSSTPAGGA 281 Query: 228 IVASAIQGDQS-----LIAVIL 244 ++ +A D ++ V+L Sbjct: 282 LMWAATASDNGGRDRLILGVVL 303 >gi|224541857|ref|ZP_03682396.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM 15897] gi|224525207|gb|EEF94312.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM 15897] Length = 294 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 15/151 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG V PAS KL++A V + K+ A+ T +N P Sbjct: 49 VMDADTGKVYYAKNEQESRYPASTIKLLSALVAIDYYKDNDALTT------RNIMSLPDR 102 Query: 93 ----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + G + + + +++KS+N++A+ +AE+ F++ MN +K +G + Sbjct: 103 VFIHTAPVYDGERIPFKDVIHGMLLKSSNEMALTLAENYKGGYDGFIEAMNKRAKKIGCT 162 Query: 149 ATHFMNAHGV--VQHG---HYTTARDMAILS 174 N HG+ G + +DMA+++ Sbjct: 163 KVDVSNPHGLSYADKGWLKETCSTKDMALIA 193 >gi|294340887|emb|CAZ89282.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas sp. 3As] Length = 457 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ D ASLTKLMTA V+ L + M + S Sbjct: 182 VVDEGTDRVLLSKNADTARPIASLTKLMTAAVI---LDAHQPMDQVIEITDADIDTLKWS 238 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+ +T + LKL ++ S N A A+A + F+ MN +++LG++ T + Sbjct: 239 SSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAFIPAMNAKARSLGMNTTRY 298 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G+ +TA D+A+L Sbjct: 299 VEPTGLSPQNE-STAHDLALL 318 >gi|317509103|ref|ZP_07966732.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316252632|gb|EFV12073.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length = 303 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 29/249 (11%) Query: 31 YTLLDTNTGHVIAENYPD--HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-S 87 + + D ++G ++A P HP PAS K + A V +A L + +T +K+ + Sbjct: 58 WLVADMDSGEILAAKNPYAYHP--PASTIKTLLALTVI-----DEAPLDSAVTATKDDLA 110 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E S K G T+ L L++ S ND A +AESL + V MN ++ +G Sbjct: 111 EC--SCVGIKPGHDYTIRQLLDALLLVSGNDAANTLAESLGGFDSA-VAKMNAKAQEIGA 167 Query: 148 SATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGK 198 + TH + G+ G +TT D+A++ +R + P + F G E Sbjct: 168 TDTHTGSPSGLDWPGMEMHTTPHDLAVI-FREALNRPLFAEITAEPSAMFPGDGGE---N 223 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD---RNTRNKV 255 + N + + + GA G KTGFT A+ V +A + + L+ ++ L+ T Sbjct: 224 EIHNQDELLSLYPGALGGKTGFTNAAKKTFVGAAERDGRRLVVAMMYGLNTPGNPTYWDQ 283 Query: 256 SASLLSMGF 264 + +LL GF Sbjct: 284 AQALLDWGF 292 >gi|50954852|ref|YP_062140.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951334|gb|AAT89035.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 394 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 33/219 (15%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----------------PSNSTFK 97 AS+TK +TA VV +KK P++ S+ E S + K Sbjct: 74 ASVTKAITALVVL----DKK-----PLSGSEQGPEISFTQKDVDIWNQVVGEGGSWAPVK 124 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G++MT AL +++ SAN+ A+++A + +V N+ G S T + G Sbjct: 125 AGTSMTEKEALTAMLLPSANNYAISLANWAFGSTGAYVSAANDWLGKKGFSGTKITSPDG 184 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGM 216 + G+ +T +D+ + ++ D P K + G NTN +G G DG+ Sbjct: 185 -LDPGNVSTTKDLIGIG-KLVLDSPALSSIVSKKTATLPGAGDQDNTNSLLGV-EGVDGI 241 Query: 217 KTGFTCASGFNIVASA----IQGDQSLIAVILGALDRNT 251 KTG T +GF ++ SA + ++ +LGA R+T Sbjct: 242 KTGNTDEAGFCLLFSAEVPVGKAKVRVVGAVLGADSRDT 280 >gi|291544768|emb|CBL17877.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13] Length = 470 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/297 (21%), Positives = 118/297 (39%), Gaps = 52/297 (17%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---- 88 L T+T V+ D P +L LMTA + ++ + + T +T+ + + Sbjct: 47 LYSTDTREVLYAKNQDEKMMPGALVNLMTALIC---VENNQDLAGTQVTVKGSLFDAFVD 103 Query: 89 --YPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSK 143 YP +G TL+ L +++ S+ + +V IA+ + + FV MN ++ Sbjct: 104 YSYPSDLRYGEIYRGDVFTLEELLYAMLLTSSCEASVVIADEIGHGSVPGFVAMMNLKAE 163 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------- 195 +G+ THF N G TTA DM ++ QY+ K LEI Sbjct: 164 EIGMKNTHFTNPDGRYNEYQVTTAGDMLLMM--------QYIQEHASKVLEIARTASYSP 215 Query: 196 -----KGKKYPNTNWAVGTFL----------GADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + W+ + GA G+KT G NI+ A + + Sbjct: 216 QIRTQENHQNGTLTWSHANIMMDEESRFYYKGAAGLKTATLQEYGRNIMVDAARDGHHYL 275 Query: 241 AVILGA--LDRNTRN-----KVSASLL--SMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +++ + + N N + +A++L + G +N + +N I + +N NE Sbjct: 276 VILMQSPIYNENKENTYYHLQDAAAVLDWAFGHFNYEEILSLNEEIAEIPVENAKNE 332 >gi|268610245|ref|ZP_06143972.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus flavefaciens FD-1] Length = 471 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 32/276 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY----------YTLLDTNTGHVIAENYPDHP 50 M++ IA +++ PF+S + + + +++ + VI E D Sbjct: 1 MKKLFAAIASVVMA--VPFISAPKAEAISFPLKNQIQSESAIVINMDVDTVIHEKNADTK 58 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPS--NSTFKKGSTMTLDN 106 P L +M A V A +T ++ + N +EY + +T+ + Sbjct: 59 QMPGPLVNIMAAVVCLENCPNINAEVTVHSSVYEYLNETEYKDDLRWADIYDEDVLTVTD 118 Query: 107 ALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 L +++ S+ + + +A + F++ MN+ ++ +GL THF NA G+ YT Sbjct: 119 LLYAMMLTSSMEASETLAYYVGDGNTDNFIKMMNDKAEEIGLENTHFTNATGMYDTAQYT 178 Query: 166 TARDMAILSWRIKTD--FPQYMHYFQI-KGLEIKGKKYPNTNW-----------AVGTFL 211 TARDMA L+ T F FQ + + + W + G + Sbjct: 179 TARDMAKLTQYALTVPLFETIATTFQYNPSIPNPDRHKSHEEWIWTHSNGMMDPSSGDYY 238 Query: 212 -GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G G+KT +G NI+A A + +AV+L A Sbjct: 239 SGMKGIKTANLEMAGRNIIAMASRDGNKYLAVLLKA 274 >gi|145640314|ref|ZP_01795898.1| adenylate kinase [Haemophilus influenzae R3021] gi|145274900|gb|EDK14762.1| adenylate kinase [Haemophilus influenzae 22.4-21] Length = 292 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 20/228 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + PD AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHAPDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F+ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY----PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 + I+ K+ NTN V A KTG+ SG+N+V Sbjct: 175 ---LNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|238794079|ref|ZP_04637696.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909] gi|238726584|gb|EEQ18121.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909] Length = 311 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNVKAKSLGMTKTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + + N+ + F Sbjct: 166 VEPTG-LSIDNVSTARDLTKLLMATK----QYPLIGQLSTTTEKMATFRDPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|300173926|ref|YP_003773092.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG 18811] gi|299888305|emb|CBL92273.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG 18811] Length = 420 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG ++A D AS +KL+TAY V + K + +TISK A Sbjct: 41 VIDASTGQILAVKNADKLGPIASQSKLLTAYAVLKAINSGKIKWSDKVTISKKADLSKQD 100 Query: 93 NSTF-----KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + F K G +T+ +I SAND A A+AE + + + +K L L Sbjct: 101 SHLFSHLAVKAGDRLTVRELYNTMITLSANDAAFALAEYMTPKNMTTAKALQLWAKELKL 160 Query: 148 SATHFMNAHGVVQHGHY 164 + + + N+ G + + Sbjct: 161 TQSTWYNSAGQINQDAF 177 >gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC 19977] gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus] Length = 429 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 29/257 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D NTG+V+A P PAS+ K++ A + L +A++ T + + Sbjct: 117 WLIADLNTGNVVAAKDPHARHRPASVIKVLVAMEAINNLNLNQAVVGTQEDANSEGTRV- 175 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 G T T+ L L++ S ND A A+A L ++ V +N+ ++ LG T Sbjct: 176 ----GVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDET-VAKINDMAQKLGARDT 230 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--------KKYP- 201 G+ G T+A D+ + ++ P + G +P Sbjct: 231 RAATPSGLDGPGMSTSAYDLGLF-YKYAFADPTFADLVSAPKATFPGHPAKPGERDDHPA 289 Query: 202 ----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-- 255 N N + + GA G KTG+T + V +A + + L+ +L R TR + Sbjct: 290 YEMTNDNKLLYNYPGALGGKTGYTDDAQQTFVGAAERDGRRLVVTML----RGTRLPIAP 345 Query: 256 ---SASLLSMGFYNKTD 269 +A LL GF D Sbjct: 346 WEQAAHLLDYGFSTPRD 362 >gi|310767083|gb|ADP12033.1| penicillin-binding protein 7 [Erwinia sp. Ejp617] Length = 316 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI E++PD AS+TKLMT V ML I+ + Sbjct: 49 IVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAHLPLDEMLKVDISHTPQMRGI--- 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N + L ++ S N A ++A F++ MN ++ LG+S T + Sbjct: 106 YSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G + + +TARD++ L Sbjct: 166 VEPTG-LSIDNVSTARDLSKL 185 >gi|288941902|ref|YP_003444142.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium vinosum DSM 180] gi|288897274|gb|ADC63110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium vinosum DSM 180] Length = 353 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 28/209 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGST-MTLDNALKLL 111 AS+TKLMTA VV + L TPI I ++ + S S + T ++ + + Sbjct: 130 ASITKLMTAMVVL----DTGVSLKTPIRIVEDDRDRLKNSRSRLRINDTVLSRREMIMVA 185 Query: 112 IVKSANDIAVAIAESLCKT-EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 I+ S N A A+ + + +F+Q MN ++ LG+ T F+++ G+ + +TA D+ Sbjct: 186 IMSSDNRAAHALGRTTFRGGTPEFIQAMNRKARALGMRNTRFVDSSGLDPR-NQSTAEDL 244 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK------GKKYPNTN-------WAVGTFLGADGMK 217 + R +++P + + ++ +Y NTN W V + K Sbjct: 245 VKMV-RAASNYPLLHEITALGQMTLRPFSDGTALQYRNTNPLVRSPEWTV------EVSK 297 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGA 246 TGF +G +V A ++SL V LG+ Sbjct: 298 TGFINEAGRCLVMRARIDNRSLYMVFLGS 326 >gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium vanbaalenii PYR-1] gi|119955993|gb|ABM12998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium vanbaalenii PYR-1] Length = 278 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 9/214 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A P + PAS K++ A V L+ +++ + Sbjct: 49 WLVADLDTGRVLASKNPYGTYAPASTIKVLLAMTVLDHLRPDNF-----ARANESHTRVE 103 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T + +++ S ND A +A+ L ++ V MN + +G +T Sbjct: 104 CSCVGLQPGQAYTTAQLVAAILMVSGNDAANMLADML-GGQRVAVAAMNRKAALVGARST 162 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 + G+ G TT D+A++ R +P + GK N N + Sbjct: 163 RASSPSGLDGPGWESVTTPHDLAVI-MRAALKYPLIAQIMRSPSAPFPGKTLHNQNELLS 221 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + G KTGFT + V +A +G++ L+ V Sbjct: 222 RYPGDLAGKTGFTNLARKTYVGAAQRGNRRLVVV 255 >gi|124267287|ref|YP_001021291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] gi|124260062|gb|ABM95056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] Length = 344 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 38/271 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D +T V+ + ASLTKLMT+ VV + ML TIS++ + Sbjct: 92 VMDQDTHEVLIDKNAQAVLPIASLTKLMTSVVVVEAGQSLDEML----TISQDDVDTEKG 147 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S S G+ +T L L ++ S N A A+ FV MN + LG++ T Sbjct: 148 SGSRLAVGTQLTRGEMLHLALMSSENRAAHALGRHYPGGLVAFVSAMNARASLLGMTDTR 207 Query: 152 FMNAHGVVQHGHYTTARDMAIL-SWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTN---- 204 ++ G+ + ++ARD+A L S + + + Q + + + +Y NTN Sbjct: 208 YVEPTGLSSR-NQSSARDLAALVSAAYQHPLIRELSTSQEYSVAVGRRTLQYRNTNGLVR 266 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 W +G KTG+ +G +V A + LI V L S Sbjct: 267 NPAWDIGL------QKTGYISEAGRCLVMQAQLAGRKLIMVFLD---------------S 305 Query: 262 MGFYNKT-DRKKINYIIKDFYQQNLSNEVPN 291 G Y++ D +++ + I+ ++ EVP Sbjct: 306 AGKYSRQGDAERVRHWIEASPPPAVTPEVPR 336 >gi|297537475|ref|YP_003673244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera sp. 301] gi|297256822|gb|ADI28667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera sp. 301] Length = 343 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 38/235 (16%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTF 96 TG +I + AS+TKLMTA V+ + + + I +Y ++S Sbjct: 102 TGEIIYAKNTNQSTPIASVTKLMTAMVML----DAHLPMDDLLFIGDEDVDYLKRTHSRL 157 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 G+ +T L+L ++ S N A A+A + F+ MN ++ LG+ +T F +A Sbjct: 158 NVGTQLTRGELLQLALMSSENRAASALARNYPGGIGAFMVAMNRKAEVLGMKSTRFYDAT 217 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--------LEIKGKKYP----NTN 204 G + + +TA D+ +K Y HY +I+ + + G++ P NTN Sbjct: 218 G-LDSNNVSTAEDL------VKMVNAAY-HYPEIRQVTTTASQEITLYGRENPINFVNTN 269 Query: 205 -------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTGF +G +V A Q +I V+L + + +R Sbjct: 270 SLVRGSDWVIGLS------KTGFINEAGRCLVMQAEISGQPMIIVLLDSAGKQSR 318 >gi|259909020|ref|YP_002649376.1| D-alanyl-D-alanine endopeptidase [Erwinia pyrifoliae Ep1/96] gi|224964642|emb|CAX56156.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase) [Erwinia pyrifoliae Ep1/96] Length = 295 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI E++PD AS+TKLMT V ML I S P Sbjct: 28 IVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAHLPLDEMLKVDI------SHTPQM 81 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 + + S ++ N + L ++ S N A ++A F++ MN ++ LG+S Sbjct: 82 RGIYSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSH 141 Query: 150 THFMNAHGVVQHGHYTTARDMAIL 173 T ++ G + + +TARD++ L Sbjct: 142 TRYVEPTG-LSIDNVSTARDLSKL 164 >gi|283479035|emb|CAY74951.1| penicillin-binding protein 7 [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI E++PD AS+TKLMT V ML I+ + Sbjct: 49 IVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAHLPLDEMLKVDISHTPQMRGI--- 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N + L ++ S N A ++A F++ MN ++ LG+S T + Sbjct: 106 YSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G + + +TARD++ L Sbjct: 166 VEPTG-LSIDNVSTARDLSKL 185 >gi|159038217|ref|YP_001537470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola CNS-205] gi|157917052|gb|ABV98479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola CNS-205] Length = 403 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 114/267 (42%), Gaps = 29/267 (10%) Query: 23 AETNKLPYYT-----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 A+T K P T + D +G V+ P PAS+ KL+ A + L K + Sbjct: 78 ADTPKAPAVTATSWVVADLASGRVLGGCGPHQHRTPASVQKLLLAAALLPRLDPTKVVEV 137 Query: 78 TPITISKNASEYPPSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKK 133 T ++ + P++S G T+ L+++S ND A +A + Sbjct: 138 T----REDLDDLDPASSLMGVVAGGRYTVKELWLGLLLQSGNDAANVLARIGGGSAGREG 193 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--KTDFPQYM-----H 186 VQ MN ++ L + TH + G+ G YT+A D+A+++ + DF +Y+ H Sbjct: 194 GVQVMNEEARRLRANQTHAVTPSGLDGTGQYTSAYDLALIARATFARDDFRRYIATRTAH 253 Query: 187 YFQIKG---LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 G L + G + +GT+ G G KTGFT + V A + + L + Sbjct: 254 LPSGPGRSALALTGDET-----LLGTYPGMLGGKTGFTDLARQTYVGVAERDGRRLAVTL 308 Query: 244 LGALDRNTRN-KVSASLLSMGFYNKTD 269 LGA + +A+LL+ GF D Sbjct: 309 LGAETAPLGSLGEAAALLNWGFALAPD 335 >gi|271500976|ref|YP_003334001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya dadantii Ech586] gi|270344531|gb|ACZ77296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya dadantii Ech586] Length = 319 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D V+ + PD AS+TKLMTA VV + +++ I+ +K E Sbjct: 48 VVDMRNNEVLYSSNPDVVVPIASVTKLMTAMVVLDANQPLDELISVDISHTK---EMQGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A + F+ MN +++LG+ T++ Sbjct: 105 YSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFITAMNAKARSLGMMHTYY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + + ++ + F Sbjct: 165 VEPTG-LSTSNVSTARDLTKLLIASK----QYPLLSQLSTTHEKTAVFTHPSYTL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + G + + V+L A + T Sbjct: 219 TNHLIYRPDWNIQLTKTGFTNQAGHCLVMRTVIGGRPVSLVVLDAFGKFT 268 >gi|238763822|ref|ZP_04624780.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638] gi|238697952|gb|EEP90711.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638] Length = 311 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTNTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + + +TARD+ L K QY Q+ K + + N+ + F Sbjct: 166 VEPTGLSIN-NVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFRDPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|312171829|emb|CBX80086.1| penicillin-binding protein 7 [Erwinia amylovora ATCC BAA-2158] Length = 316 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI +++PD AS+TKLMT V ML I+ + Sbjct: 49 IVDLNSNKVIYQSHPDRVRPIASITKLMTVMVTLDAHLPLDEMLKVDISHTPQMRGI--- 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N + L ++ S N A ++A F++ MN ++ LG+S T + Sbjct: 106 YSRVRLNSELSRRNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G+ + +TARD++ L Sbjct: 166 VEPTGLAIE-NVSTARDLSKL 185 >gi|145503045|ref|XP_001437500.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404650|emb|CAK70103.1| unnamed protein product [Paramecium tetraurelia] Length = 458 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 46/217 (21%) Query: 54 ASLTKLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MT Y FL+EK+ M + I I +A +++ G M + L ++ Sbjct: 212 ASITKVMTCYTTLKFLEEKRIDMESIRIKIPGHAECIDGTSAFLNAGGIMNVRQLLFAMM 271 Query: 113 VKSANDIAVAIAESL-------------------CKTE---------KKFVQHMNNTSKN 144 + S ND A+ ++ ++ C+ E +F+Q MNN ++N Sbjct: 272 LPSGNDAALVLSYAIAFLKTCDSIQRYCNGHYIDCELEIEKNKFQLRTQFLQMMNNHAEN 331 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYM--HYFQIKGLEIKGK- 198 L + T++ + HG+ + + A D+ L +IK +F + + F+ + +G Sbjct: 332 LKMDKTNYNSVHGLNDTLNVSCALDIFKLVEECIKIK-EFMEIVNTRCFKTYAVTEQGNQ 390 Query: 199 ----KYPNTNWAVGTFLGADGMKTGFT-----CASGF 226 K+ NTN + G +G+KTG T C SG+ Sbjct: 391 GTYYKWKNTNKLLKK-EGWEGIKTGITSNAGPCFSGY 426 >gi|292487716|ref|YP_003530589.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430] gi|292898950|ref|YP_003538319.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946] gi|291198798|emb|CBJ45907.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946] gi|291553136|emb|CBA20181.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430] Length = 316 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ VI +++PD AS+TKLMT V ML I+ + Sbjct: 49 IVDLNSNKVIYQSHPDRVRPIASITKLMTVMVTLDAHLPLDEMLKVDISHTPQMRGI--- 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ N + L ++ S N A ++A F++ MN ++ LG+S T + Sbjct: 106 YSRVRLNSELSRRNMMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G+ + +TARD++ L Sbjct: 166 VEPTGLAIE-NVSTARDLSKL 185 >gi|148825354|ref|YP_001290107.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE] gi|148715514|gb|ABQ97724.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE] Length = 292 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 14/206 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V+ PD AS+TKLMTA V FL+ K I I+K ++ Sbjct: 21 YVVYDFTHNRVLESYAPDSIQPIASVTKLMTANV---FLENNKNP-NCRIAITKEDTDRI 76 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 T K ++ + LK ++V S N A A++ + + ++F+ MN + LG+ + Sbjct: 77 KGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLGMYS 136 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMHYFQIKGLEIKGKKY----PNTN 204 T F ++ G+ + + + + + + K D + + + I+ KY NTN Sbjct: 137 TRFHDSSGLSSYNISSPMDLVKLAKYSLNKADIKRLSN---LSATYIQAGKYKLYIKNTN 193 Query: 205 WAV-GTFLGADGMKTGFTCASGFNIV 229 V A KTG+ SG+N+V Sbjct: 194 KLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans Agy99] gi|118569729|gb|ABL04480.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans Agy99] Length = 290 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 22/246 (8%) Query: 31 YTLLDTNTGHVIA--ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + + D +TG V+A + HP PAS K++ A V L + ++ A Sbjct: 44 WIVADLDTGQVLAGRDQNVTHP--PASTIKVLLALVALDELNLNSTV------VADEADT 95 Query: 89 YPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + N K G T T L L++ S ND A +A+ L + V MN + LG Sbjct: 96 HVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQ-LLGGQDAAVAKMNAKAAALGA 154 Query: 148 SATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYP-- 201 TH G+ G ++TA D+A++ +R P + H G+ ++P Sbjct: 155 MNTHAATPSGLDGPGGSGWSTAHDLAVI-FRTAMANPVFAHITAEPSAMFPGEDGEHPIV 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRN--TRNKVSAS 258 N + + + GA G KTG+T A+ V +A + G + +IA++ G + T + S Sbjct: 214 NQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTYWDQAGS 273 Query: 259 LLSMGF 264 L GF Sbjct: 274 LFDWGF 279 >gi|302543172|ref|ZP_07295514.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces hygroscopicus ATCC 53653] gi|302460790|gb|EFL23883.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces himastatinicus ATCC 53653] Length = 929 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 15/202 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109 AS+TK+MTAYVV K I I A+E S ++ K+G + T L+ Sbjct: 605 ASVTKVMTAYVVLKDHPLKAGAEGPRIEIDATAAEESGSADESRASVKEGQSFTQHQLLQ 664 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LL++ S+N+IA +A + F + MN+ +K+LG+ T + + G+ + T + Sbjct: 665 LLLINSSNNIARLLARWDAGSLDAFTKKMNDAAKSLGMKNTTYTDPSGLKETTKSTASDQ 724 Query: 170 MAILSWRIKTD-FPQYMHY--FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + ++++ F + + QI GL+ GK Y N N V G G+KTG + +G Sbjct: 725 LKLAKAAMQSEAFREVVATPNTQIPGLD--GKIYNNNNLLV--KPGVIGIKTGSSTPAGG 780 Query: 227 NIVASAIQ----GDQSLIAVIL 244 ++ A++ Q ++ V+L Sbjct: 781 ALMWGAVRTIDGKKQRILGVVL 802 >gi|238749857|ref|ZP_04611361.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380] gi|238711786|gb|EEQ04000.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380] Length = 311 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VIDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTKTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ + +TARD+ L K QY Q+ K + N+ + F Sbjct: 166 VEPTGLSIE-NVSTARDLTKLLVATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|253687929|ref|YP_003017119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754507|gb|ACT12583.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 315 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D H++ + PD AS+TKLMTA VV + +++ I+ +K E Sbjct: 48 VVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQPLDEIISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A + F++ MN ++ LG++ T + Sbjct: 105 YSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NT 203 + G + + +TARD+ L K QY Q+ + K + NT Sbjct: 165 VEPTG-LSINNVSTARDLTKLLIASK----QYPLLSQLSTTQEKTATFSHPAYSLPFRNT 219 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W++ KTGFT +G +V + + + V+L A + T Sbjct: 220 NHLVYKADWSIQL------TKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYT 268 >gi|300857885|ref|YP_003782868.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium pseudotuberculosis FRC41] gi|300685339|gb|ADK28261.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium pseudotuberculosis FRC41] gi|302330165|gb|ADL20359.1| putative peptidoglycan synthesis related protein [Corynebacterium pseudotuberculosis 1002] gi|308275848|gb|ADO25747.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium pseudotuberculosis I19] Length = 404 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 19/223 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D + G VIA P + PAS+ K + A V L L + I+ + Sbjct: 96 WMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALDELN-----LKAKVKITAEDANQE 150 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T + L L++ S ND A A+A+ L + K ++ +N + +LG T Sbjct: 151 GSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGG-DNKTLEKVNALAHSLGTVDT 209 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT--NW 205 + + G+ G T+A D+A++ +W+ P + + +E+ G T W Sbjct: 210 YAASYSGLDAPGMSTSAHDLALIYSHAWK----NPTFAKMVATEHIELPGNAATPTFQVW 265 Query: 206 -AVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G FL + G KTG+T + V + + L AVIL Sbjct: 266 NDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVIL 308 >gi|319949460|ref|ZP_08023520.1| putative penicillin-binding protein [Dietzia cinnamea P4] gi|319436886|gb|EFV91946.1| putative penicillin-binding protein [Dietzia cinnamea P4] Length = 342 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 5/143 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG ++A P + PASL K + A VV L + + T + Sbjct: 46 WMISDLDTGEIVAARDPHGRYRPASLIKTLLATVVLDALDPEWIVHVTDADLEGAEG--- 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G ++ L L++ S ND AV +A + E+ + MN + +G +T Sbjct: 103 -SLVGVGPGGAYSVKRLLSGLLMSSGNDAAVVLAHQMGGIEQTL-EAMNTHAAAIGARST 160 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 + +G+ G +TA DM+++ Sbjct: 161 YAATVNGLDGPGMMSTAYDMSLI 183 >gi|145529840|ref|XP_001450703.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418325|emb|CAK83306.1| unnamed protein product [Paramecium tetraurelia] Length = 490 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 50/244 (20%) Query: 54 ASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS+TK+MT YV ++ + + ++K +SE + + K +++++ L L+ Sbjct: 230 ASITKIMTFYVTLLTIELYNLDVKQIKVKVTKKSSETIGTTAELKYNDILSMEDLLYGLM 289 Query: 113 VKSANDIAVAIAESL--------------------------------------CKTEKKF 134 + S ND AV IA+++ C E F Sbjct: 290 LPSGNDAAVLIAQAIGTIILFNQQNKRLDLKLIDIEQLSAEGYFYNHEFRFQYCPIEV-F 348 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQYM---HYFQI 190 ++HMN S +G T F HG+ +Y+ D+ LS +K + Q + + Sbjct: 349 IKHMNKYSSQIGQQNTQFACVHGLANEDNYSCCNDIITLSIECLKYELFQTVISSKEYVT 408 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS--LIAVILGALD 248 K L K ++ NTN + G G+KTG T ++G +ASA + ++ I ++L Sbjct: 409 KSL-YKQYEWKNTNKLLDK--GFFGIKTGITESAG-PCLASAYRSNEMDYYIIIVLNCKH 464 Query: 249 RNTR 252 N R Sbjct: 465 MNMR 468 >gi|307260895|ref|ZP_07542581.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869462|gb|EFN01253.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 273 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 11/219 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ ++ AS+TKLMTA + FL+ K + ++ Sbjct: 21 YVVYDFTHDRILESRAANNVQPIASVTKLMTANI---FLENNKNKNCSASISDQDFDHIK 77 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+ +T Sbjct: 78 GTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRST 137 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWA 206 F ++ G + + ++A D+ L+ + + + K ++ GK+ NT+ Sbjct: 138 RFSDSSG-LSSANISSALDLVKLA-KYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSAL 195 Query: 207 VGTFL-GADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 V L A KTG+ SG+N+V + Q + + I VI Sbjct: 196 VREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVI 234 >gi|149928524|ref|ZP_01916755.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter sp. MED105] gi|149822763|gb|EDM82019.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter sp. MED105] Length = 278 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 24/230 (10%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSN 93 D ++ V+ P AS+TK+MT V E L ITI+ ++ Y + Sbjct: 37 DADSLEVLYAKNPSAVVPIASITKIMTVVVTL----EAGLNLDEVITITTEDIDYYKNTR 92 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 S K GS T + L ++ S N A A+ S V MN + +L + T+F Sbjct: 93 SRLKPGSEFTRRELIHLALMASENRAASALGRSYPGGLAACVAEMNRRAASLRMFNTNFA 152 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTN----- 204 G+ + ++A D+A + + FP + ++ K + NTN Sbjct: 153 ETTGLSVE-NKSSANDLARMVLHAQR-FPLIRQFSTDPQFSVQSGKGQLNFRNTNRLIKN 210 Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + KTGF +G +V A GD++L+ V+L AL R Sbjct: 211 KEWDIQV------QKTGFINEAGRCLVMKAKVGDRNLVIVLLDALGSQAR 254 >gi|126207904|ref|YP_001053129.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae L20] gi|126096696|gb|ABN73524.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 259 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 13/220 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMTA + FL+ K + ++ + + K + + D LK ++V Sbjct: 44 ASVTKLMTANI---FLENNKNKNCSASISDQDFDHIKGTGTKLPKHTPIACDELLKAMLV 100 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ S + +F+Q MN ++ LG+ +T F ++ G + + ++A D+ L Sbjct: 101 HSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSG-LSSANISSALDLVKL 159 Query: 174 SWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWAVGTFL-GADGMKTGFTCASGFNI 228 + + + + K ++ GK+ NT+ V L A KTG+ SG+N+ Sbjct: 160 A-KYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGYIRESGYNL 218 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 V + Q A I G + N R+ + S L +N T Sbjct: 219 V--FVNKHQCNHATI-GVISLNNRSSATRSTLPKTNWNST 255 >gi|160879346|ref|YP_001558314.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428012|gb|ABX41575.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 667 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L+D ++ ++ N + LM + + L+E A LT +T+SK A+ Sbjct: 105 LVDMTASELLGGSFLSSRSNFSGFNDLM---FILTTLRE--APLTDIVTVSKRAASLKGE 159 Query: 93 NS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 N FK+G ++L++ L + D +AI + + + F+ MN+ ++N+GL T+ Sbjct: 160 NIFGFKEGDKISLNDLLLCFYFTGSEDARLAIVDHIAGNDTTFIAMMNSVARNIGLINTN 219 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRI 177 + N +G T D+ + + + Sbjct: 220 YSNINGDYNKSQRTMLYDIYSIVYEL 245 >gi|227515412|ref|ZP_03945461.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum ATCC 14931] gi|227086216|gb|EEI21528.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum ATCC 14931] Length = 417 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 45/248 (18%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEY 89 +D TG V+ E + AS+ K+ T V+ +++ K I ISK A+++ Sbjct: 44 IDAETGQVLYEKNATKRYPIASVIKIRTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDW 103 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN +G + T+ + ++ +++ SA+ A A+A + + F Q M +K G++ Sbjct: 104 RFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTD 163 Query: 150 THFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ + + +A+D+A ++ + +P LEI Sbjct: 164 AKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVEKYPSV--------LEI 215 Query: 196 KGKKYPN-------------------TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +K+ N N A T DG+KTG T +SG+ V + Sbjct: 216 TKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNG 275 Query: 237 QSLIAVIL 244 + LI V+L Sbjct: 276 RRLITVVL 283 >gi|113867401|ref|YP_725890.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16] gi|113526177|emb|CAJ92522.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16] Length = 380 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 37/237 (15%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 ++D N+ V+ + AS+TKLMTA VV + + + +TIS+ + Sbjct: 112 VMDQNSNEVLFQKNASAVLPIASITKLMTALVVM----DARLPMDEVLTISEEDRDTEKH 167 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S S + G+ +T L L ++ S N A A+ + FVQ MN ++ LG++ +H Sbjct: 168 SGSRLRFGTQLTRQELLLLALMSSENRAASALGRNYPGGLPAFVQAMNRKARELGMNDSH 227 Query: 152 FMNAHGVVQHGHYTTA----------RDMAILSWRIKTD-----FPQYMHYFQIKGLEIK 196 F+++ G+ + R+ I + +T+ + HY L ++ Sbjct: 228 FVDSSGLSSSNVSSATDLVRMVNAAYRNPTIREFSTQTEHEVNVLGRTQHYVSTNRL-VR 286 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVIL---GALDR 249 G NW +G KTGF +G +V A +QG ++++ V L G L R Sbjct: 287 G-----GNWEIGL------QKTGFISEAGQCLVMQAKVQG-RNVVMVFLDSAGKLSR 331 >gi|190149713|ref|YP_001968238.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249783|ref|ZP_07335987.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252663|ref|ZP_07338826.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245252|ref|ZP_07527343.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247423|ref|ZP_07529470.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251972|ref|ZP_07533873.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254199|ref|ZP_07536044.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256466|ref|ZP_07538248.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258664|ref|ZP_07540399.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263022|ref|ZP_07544644.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914844|gb|ACE61096.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648631|gb|EFL78824.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651350|gb|EFL81502.1| penicillin-binding protein 7 precursor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853896|gb|EFM86110.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856120|gb|EFM88276.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860664|gb|EFM92676.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862899|gb|EFM94848.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865096|gb|EFM96997.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867321|gb|EFM99174.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871648|gb|EFN03370.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 273 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 11/219 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ ++ AS+TKLMTA + FL+ K + ++ Sbjct: 21 YVVYDFTHDRILESRAANNVQPIASVTKLMTANI---FLENNKNKNCSASISDQDFDHIK 77 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+ +T Sbjct: 78 GTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRST 137 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWA 206 F ++ G + + ++A D+ L+ + + + K ++ GK+ NT+ Sbjct: 138 RFSDSSG-LSSANISSALDLVKLA-KYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSAL 195 Query: 207 VGTFL-GADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 V L A KTG+ SG+N+V + Q + + I VI Sbjct: 196 VREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVI 234 >gi|123443099|ref|YP_001007073.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090060|emb|CAL12923.1| penicillin-binding protein 7 precursor [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 311 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTKTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + N+ + F Sbjct: 166 VEPTG-LSINNVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|254248244|ref|ZP_04941564.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia PC184] gi|124874745|gb|EAY64735.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia PC184] Length = 326 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 24/208 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + + +L +++ + S + GS ++ + ++ Sbjct: 112 ASISKLMTAVVARNADRPLNGVLRV---TARDRDTIKFTGSRLQVGSELSRREMFHIALM 168 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 169 SSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLARL 227 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----------KTGFTC 222 D + YF ++ P V ++ +D + KTGF Sbjct: 228 VGAAAQD--PLIRYFST---DLSTTVRPGDGELV--YVNSDPLVRYRRLPIRLQKTGFIN 280 Query: 223 ASGFNIVAS-AIQGDQSLIAVILGALDR 249 SG +V ++G + + V+LGA R Sbjct: 281 ESGHGVVMRMRVKGRRETV-VLLGAATR 307 >gi|46143271|ref|ZP_00135568.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 251 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 11/196 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMTA + FL+ K + ++ + + K + + D LK ++V Sbjct: 22 ASVTKLMTANI---FLENNKNKNCSASISDQDFDHIKGTGTKLPKHTPIACDELLKAMLV 78 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ S + +F+Q MN ++ LG+ +T F ++ G + + ++A D+ L Sbjct: 79 HSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSG-LSSANISSALDLVKL 137 Query: 174 SWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWAVGTFL-GADGMKTGFTCASGFNI 228 + + + + K ++ GK+ NT+ V L A KTG+ SG+N+ Sbjct: 138 A-KYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGYIRESGYNL 196 Query: 229 V-ASAIQGDQSLIAVI 243 V + Q + + I VI Sbjct: 197 VFVNKHQCNHATIGVI 212 >gi|302205612|gb|ADL09954.1| putative peptidoglycan synthesis related protein [Corynebacterium pseudotuberculosis C231] Length = 404 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 19/223 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D + G VIA P + PAS+ K + A V L L + I+ + Sbjct: 96 WMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALDELN-----LKAKVKITAEDANQE 150 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G T + L L++ S ND A A+A+ L + K ++ +N + +LG T Sbjct: 151 GSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGG-DNKTLEKVNALAHSLGTVDT 209 Query: 151 HFMNAHGVVQHGHYTTARDMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNT--NW 205 + + G+ G T+A D+A++ +W + P + + +E+ G T W Sbjct: 210 YAASYSGLDAPGMSTSAHDLALIYSHAW----ENPTFAKMVATEHIELPGNAATPTFQVW 265 Query: 206 -AVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G FL + G KTG+T + V + + L AVIL Sbjct: 266 NDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVIL 308 >gi|296138681|ref|YP_003645924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella paurometabola DSM 20162] gi|296026815|gb|ADG77585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella paurometabola DSM 20162] Length = 432 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A P + PAS KL+ A V L L T ++ + + Sbjct: 110 WLVADLTSGTVVAAKDPHGRYRPASTIKLLLAQVALRELN-----LDTVVSGTAEDAAQE 164 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G T+ L+ L++ S ND A A+A L + V MN+ +K+LG T Sbjct: 165 GDAAGVAPGGRYTVRQLLEGLLLISGNDTAHALARQLGGVDTA-VAKMNDLAKSLGAKDT 223 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 + G+ G T+ D+A++ Sbjct: 224 RAITPSGLDGPGQTTSPYDLALI 246 >gi|146620|gb|AAA66340.1| D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] Length = 180 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%) Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 L DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ GF Sbjct: 13 LNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 66 >gi|324999565|ref|ZP_08120677.1| putative penicillin-binding protein [Pseudonocardia sp. P1] Length = 310 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 19/227 (8%) Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS KL+ A V L ++ ++ T + + S + G T+D L L Sbjct: 8 RPASTIKLLLALVADEVLPPERVVVGTVEDANIDGSR-----AGVGPGGRYTVDQLLHGL 62 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ S ND A A++ L + M + + +LG T G+ G ++A D+A Sbjct: 63 LLASGNDAAHALSRELGGDQATLAA-MQDAAAHLGARDTRPATPSGLDGPGMSSSAYDLA 121 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP-----NTNWAVGT--FLGADGMKTGFTCA 223 ++ R D P+ + + G P N + +GT FLG K GFT A Sbjct: 122 LI-LRAALDRPRIAAALRTPSIPFPGFADRPGFELGNDDRMLGTPGFLGG---KNGFTDA 177 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA-SLLSMGFYNKTD 269 + V + + + L+ ++ + R A SLL GF D Sbjct: 178 ARHTFVGAVERDGRRLVVALVRGESQPVRMVDQARSLLDWGFGAPQD 224 >gi|262183779|ref|ZP_06043200.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum ATCC 700975] Length = 406 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG +IA P+ + PAS+ K + A VV L L IT + + + Sbjct: 93 WMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIEELP-----LDQRITATLDDASVE 147 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S T++ L+ L++ S ND A A+A+++ E+ + +N ++ +G +T Sbjct: 148 GSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEAL-EKVNAKAQEIGTRST 206 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIK--------------TDFPQYMHYFQIKGLEIK 196 + G+ G T+A D++++ +R DFP + E+ Sbjct: 207 VAASYSGLDAAGMSTSAADISLI-YRAAFANDTFARIVDTEHVDFPGWG--------EMP 257 Query: 197 GKKYPNTNWAVGTFL-GADGM--KTGFTCASGFNIVASAIQGDQSLIAVIL 244 G + N N G FL DG+ KTG+T + V + + + L AV+L Sbjct: 258 GYELWNDN---GLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLL 305 >gi|296394587|ref|YP_003659471.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] gi|296181734|gb|ADG98640.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus rotundus DSM 44985] Length = 407 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AMLTTPITISKNASEY 89 + + D + G V+A P + PAS K + A V + L K+ LT + SE+ Sbjct: 100 WLVADLDNGQVLAAEDPHGRFRPASTVKTLLALAVLNELDPKQLVQLTEGDQTADEESEH 159 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGL 147 + G+T ++ + L+ ++ S+N A A+A L VQ MN+ + LG Sbjct: 160 ----KFIQAGTTYSVFDLLEGALMVSSNGAANALARVLGGPGGVAAAVQKMNSLADELGA 215 Query: 148 SATHFMNAHGVVQHGHYTTAR--DMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYP-- 201 T GV G +++ D+A++ +R + K + + G +P Sbjct: 216 KDTRATTPSGVEAPGGPSSSSPYDLALI-FRAAMKHADFRKIVGQKSVSMHGNPDDFPLV 274 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD-RNTRNKVSASLL 260 N N + + G G KTG+T + V +A +G + L+ + L+ +T + +A+LL Sbjct: 275 NDNAMLDDYPGMLGGKTGYTDDAEKTFVGAAERGRRRLVVTQMYGLNGASTFREQAAALL 334 Query: 261 SMGF 264 GF Sbjct: 335 DWGF 338 >gi|307249643|ref|ZP_07531629.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858341|gb|EFM90411.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 273 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 11/219 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ ++ AS+TKLMTA + FL+ K + ++ Sbjct: 21 YVVYDFTHDRILESRAANNVQPIASVTKLMTANI---FLENNKNKNCSASISDQDFDHIK 77 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+ +T Sbjct: 78 GTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRST 137 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKK---YPNTNWA 206 F ++ G + + ++A D+ L+ + + + K ++ GK+ NT+ Sbjct: 138 RFSDSSG-LSSANISSALDLVKLA-KYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSAL 195 Query: 207 VGTFL-GADGMKTGFTCASGFNIV-ASAIQGDQSLIAVI 243 V L A KTG+ SG+N+V + Q + + I VI Sbjct: 196 VREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVI 234 >gi|318604889|emb|CBY26387.1| murein-DD-endopeptidase [Yersinia enterocolitica subsp. palearctica Y11] gi|330859412|emb|CBX69757.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica W22703] Length = 322 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 60 VVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 116 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F+ MN +K+LG++ T + Sbjct: 117 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNAKAKSLGMTKTRY 176 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + N+ + F Sbjct: 177 VEPTG-LSINNVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 230 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 231 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 280 >gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M] gi|183175136|gb|ACC40246.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M] Length = 290 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 22/246 (8%) Query: 31 YTLLDTNTGHVIA--ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + + D +TG V+A + HP PAS K++ A V L + ++ A Sbjct: 44 WIVADLDTGQVLAGRDQNVTHP--PASTIKVLLALVALDELDLNSTV------VADEADT 95 Query: 89 YPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + N K G T T L L++ S ND A +A+ L + V MN + LG Sbjct: 96 HVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQML-GGQDAAVAKMNAKAAALGA 154 Query: 148 SATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYP-- 201 TH G+ G ++TA D+A++ +R P + H G+ ++P Sbjct: 155 MNTHAATPSGLDGPGGSGWSTAHDLAVI-FRTAMANPVFAHITAEPSAMFPGEDGEHPIV 213 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRN--TRNKVSAS 258 N + + + GA G KTG+T A+ V +A + G + +IA++ G + T + S Sbjct: 214 NQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTYWDQAGS 273 Query: 259 LLSMGF 264 L GF Sbjct: 274 LFDWGF 279 >gi|222111139|ref|YP_002553403.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Acidovorax ebreus TPSY] gi|221730583|gb|ACM33403.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax ebreus TPSY] Length = 360 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT +V E + ITI+++ + Sbjct: 113 VIDQDTKEVLLSKN-DHAVLPIASLTKLMTGLLV----SEAHLPMDELITITQDDVDTEK 167 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T++ L L ++ S N A A+ + FV MN +K LG++ T Sbjct: 168 GSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMADT 227 Query: 151 HFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 F+ G+ + ++A D+A L R + P + + L+ Y N Sbjct: 228 RFVEPTGLSSR-NQSSAHDLATLVNVAHGDALLRELSTSPSHEVAIGRRTLQ-----YNN 281 Query: 203 TN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 TN W +G KTG+ +G +V A + LI V L + + +R Sbjct: 282 TNRLVKSPSWDIGL------QKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSR 332 >gi|68248967|ref|YP_248079.1| penicillin-binding protein 7-like protein [Haemophilus influenzae 86-028NP] gi|68057166|gb|AAX87419.1| penicillin-binding protein 7 homolog precursor [Haemophilus influenzae 86-028NP] Length = 292 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 28/213 (13%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V+ PD AS+TKLMTA V FL+ K I I+K ++ Sbjct: 21 YVVYDFTHNRVLESYAPDSIQPIASVTKLMTANV---FLENNKNP-NCRIAITKEDTDRI 76 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 T K ++ + LK ++V S N A A++ + + ++F+ MN + LG+ + Sbjct: 77 KGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLGMYS 136 Query: 150 THFMNAHG-----------VVQHGHYTTAR-DMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 T F ++ G +V+ Y+ + D+ +LS T H IK Sbjct: 137 TRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKLLSNLSATYIQAGKHKLYIK------ 190 Query: 198 KKYPNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 NTN V A KTG+ SG+N+V Sbjct: 191 ----NTNKLVRDEIFDAAVNKTGYIRESGYNLV 219 >gi|107026153|ref|YP_623664.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia AU 1054] gi|116692663|ref|YP_838196.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia HI2424] gi|170738088|ref|YP_001779348.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia MC0-3] gi|105895527|gb|ABF78691.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia AU 1054] gi|116650663|gb|ABK11303.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia HI2424] gi|169820276|gb|ACA94858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia cenocepacia MC0-3] Length = 360 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 24/208 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L +++ + S + GS ++ + ++ Sbjct: 146 ASISKLMTAVVARDADRPLNGVLRV---TARDRDTIKFTGSRLQVGSELSRREMFHIALM 202 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 203 SSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLARL 261 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----------KTGFTC 222 D + YF ++ P V ++ +D + KTGF Sbjct: 262 VGAAAQD--PLIRYFST---DLSTTVRPGDGELV--YVNSDPLVRYRRLPIRLQKTGFIN 314 Query: 223 ASGFNIVAS-AIQGDQSLIAVILGALDR 249 SG +V ++G + + V+LGA R Sbjct: 315 ESGHGVVMRMRVKGRRETV-VLLGAATR 341 >gi|325473430|gb|EGC76625.1| hypothetical protein HMPREF9353_02420 [Treponema denticola F0402] Length = 188 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNK 254 P TN + G DG+KTGF SGFNI +A + + IAVILG +N R + Sbjct: 3 PATNTLLKKIEGCDGLKTGFIYESGFNISLTAQKNGERFIAVILGGHGKNFTEGIFKREQ 62 Query: 255 VSASLLSMGFYN 266 S L++ F N Sbjct: 63 NSIKLMNFAFDN 74 >gi|134293778|ref|YP_001117514.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4] gi|134136935|gb|ABO58049.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia vietnamiensis G4] Length = 363 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 17/216 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L +++ + S G+ ++ + ++ Sbjct: 149 ASISKLMTALVARDADRPLNGVLRV---TARDRDTIKFTGSRLPVGAELSRRQMFHIALM 205 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV MN ++ LG+ ATHF G+ H + +TA D+A L Sbjct: 206 SSENRAAAALSRDYPGGRAAFVGAMNRKARQLGMRATHFREPTGLSPH-NVSTAEDLARL 264 Query: 174 SWRIKTDFPQYMHYFQIK---GLEIKGKK--YPNTNWAVG-TFLGADGMKTGFTCASGFN 227 D + YF +E + Y N++ V L KTGF SG Sbjct: 265 VGAAAHD--PLIRYFSTDTSTTIEAGDGELLYVNSDPLVRYGRLPIRLQKTGFINESGHG 322 Query: 228 IV-ASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +V + + G + I V+LGA +TR VS+ L + Sbjct: 323 VVMRTRVHGRRETI-VLLGA---STRAGVSSDALKI 354 >gi|332161016|ref|YP_004297593.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665246|gb|ADZ41890.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 311 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F+ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNAKAKSLGMTKTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + N+ + F Sbjct: 166 VEPTG-LSINNVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|121594143|ref|YP_986039.1| murein-DD-endopeptidase [Acidovorax sp. JS42] gi|120606223|gb|ABM41963.1| murein-DD-endopeptidase [Acidovorax sp. JS42] Length = 360 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +T V+ DH P ASLTKLMT +V E + ITI+++ + Sbjct: 113 VIDQDTKEVLLSKN-DHAVLPIASLTKLMTGLLV----SEAHLPMDELITITQDDVDTEK 167 Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T++ L L ++ S N A A+ + FV MN +K LG++ T Sbjct: 168 GSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMADT 227 Query: 151 HFMNAHGVVQHGHYTTARDMAILS--------WRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 F+ G+ + ++A D+A L R + P + + L+ Y N Sbjct: 228 RFVEPTGLSSR-NQSSAHDLATLVNVAHGDALLRELSTSPSHEVAVGRRTLQ-----YNN 281 Query: 203 TN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 TN W +G KTG+ +G +V A + LI V L + + +R Sbjct: 282 TNRLVKSPSWDIGL------QKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSR 332 >gi|240170567|ref|ZP_04749226.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium kansasii ATCC 12478] Length = 294 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 20/245 (8%) Query: 31 YTLLDTNTGHVIAENYPD--HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + + D ++G V+AE + HP PAS K++ A V L L + + ++ Sbjct: 48 WIVADLDSGQVLAERDQNVAHP--PASTIKVLLALVALDELD-----LNSTVVADVADTQ 100 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + K G T T L L++ S ND A +A+ L + V MN + LG Sbjct: 101 VECNCVGIKPGRTYTARQLLDALLLVSGNDAANTLAQML-GGQDVAVAKMNAKAAALGAG 159 Query: 149 ATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPN 202 +TH G+ G +TA D+A++ +R P + G + N Sbjct: 160 STHAATPSGLDGPGGSGASTAHDLAVI-FRAAMANPVFARITAEPSAMFPGDNGDQPIVN 218 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRN--TRNKVSASL 259 + + + GA G KTGFT A+ V +A + G + +IA++ G + T +ASL Sbjct: 219 QDELLQRYPGAIGGKTGFTNAARKTFVGAAARNGRRLVIAMMYGMVKEGGPTYWDQAASL 278 Query: 260 LSMGF 264 GF Sbjct: 279 FDWGF 283 >gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] gi|126234330|gb|ABN97730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] Length = 291 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 22/246 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A + PAS K + A VV + L T I + + Sbjct: 45 WIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVL-----DEVPLDTTIAAEEADTRVE 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G T L+ L++ S ND A +A L + V MN + LG T Sbjct: 100 CNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSA-VAKMNAKAAQLGAHGT 158 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYP 201 + + G+ G ++TA D+A++ +R P ++ F K E Sbjct: 159 NVVTPSGLDGPGMPFWSTAHDLAVI-FRAAMANPVFVQITAMPSTVFPTKAGE---AVLV 214 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN---TRNKVSAS 258 N N + + GA G KTGFT + V +A + + L+ V++ L + T +A Sbjct: 215 NQNELLHRYPGAIGGKTGFTDIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAG 274 Query: 259 LLSMGF 264 LL GF Sbjct: 275 LLDWGF 280 >gi|332284463|ref|YP_004416374.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] gi|330428416|gb|AEC19750.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] Length = 355 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 15/238 (6%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 +N+ P ++A T + + D ++ V+ + D AS++KLMTA VV E Sbjct: 97 ANLAPLTNLA-TLRAEVAFVQDLDSLDVLYDKNGDEVRPIASISKLMTALVV----AEAG 151 Query: 74 AMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + +TIS + S S G+ ++ + L L ++ S N A A+ Sbjct: 152 LAMDEMLTISDADVDRLRYSRSRLPVGTELSRADMLHLALMSSENRAAHALGRYYPGGMP 211 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FV+ MN+ ++ LG+ T F+ G + + +T+RD+ L R T+ Y Sbjct: 212 AFVRAMNDKARALGMRNTRFVEPTG-LSSDNVSTSRDLVKL-LRATTEHKLIHRYTTDDK 269 Query: 193 LEI---KGKK--YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 ++ +G++ Y NTN VG + KTGF +G +V + DQ +A++L Sbjct: 270 YKVTVGRGRQLVYNNTNRLVGNSKWDIKVSKTGFINEAGECLVM-LTRIDQRDVAIVL 326 >gi|170700087|ref|ZP_02891109.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria IOP40-10] gi|170135001|gb|EDT03307.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria IOP40-10] Length = 359 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 23/219 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L S++ + S G+ ++ + ++ Sbjct: 145 ASISKLMTAVVARDADRPLNGVLRV---TSRDRDTIKFTGSRLPIGAELSRRQMFHIALM 201 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 202 SSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPH-NVSTAEDLARL 260 Query: 174 SWRIKTDFPQYMHYF--------QIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCAS 224 D + YF Q E+ Y N++ V + L KTGF S Sbjct: 261 VGAAAQD--PLIRYFSTDTSTTVQAGDGEL---LYVNSDPLVRSGSLPIRLQKTGFINES 315 Query: 225 GFNIVAS-AIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 G +V ++G + I V+LGA TR VS+ L + Sbjct: 316 GHGVVMRMRVKGRRETI-VLLGA---PTRAGVSSDALKI 350 >gi|226323178|ref|ZP_03798696.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758] gi|225208368|gb|EEG90722.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758] Length = 288 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 26/196 (13%) Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYTTA 167 +++S ND AVAIAE L + +F MN ++ +G + HF+ +G+ V H +A Sbjct: 1 MLESHNDSAVAIAEHLAGSVPQFAGWMNEKAEEIGCTEAHFVTPNGLDEEDVGGVHSISA 60 Query: 168 RDMA-ILSWRIKTDFPQYMHYFQIKGL------EIKGK---KYPNTNWAVGTFLGADGMK 217 D+A I+S+ + P+ + I + + +GK N N + GA K Sbjct: 61 ADLAKIMSYCVLRS-PKAAEFLAITQMPAYSFSDAEGKGNFSCSNHNAFLQMMDGAISGK 119 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 TGFT +G+ V + ++ + +L N +N Y TD +K+ Sbjct: 120 TGFTGDAGYCYVGALQSEGRTFVVALLACGWPNNKN-----------YKWTDTRKLMEYG 168 Query: 278 KDFYQQNLSNEVPNIS 293 Y+ ++P +S Sbjct: 169 MAHYRYAEVWKIPELS 184 >gi|161520620|ref|YP_001584047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia multivorans ATCC 17616] gi|189353194|ref|YP_001948821.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|160344670|gb|ABX17755.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia multivorans ATCC 17616] gi|189337216|dbj|BAG46285.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] Length = 364 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS++KLMTA V ++ L + ++ N + + S + GS ++ + + + Sbjct: 150 ASISKLMTAVVA----RDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIAL 205 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A Sbjct: 206 MSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLAR 264 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFN 227 L D P ++ + ++ Y N++ V L KTGF SG Sbjct: 265 LVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHG 323 Query: 228 IVAS-AIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 +V ++G ++ + V+LGA TR VS+ +++ Sbjct: 324 VVMRMRVKGRRTTV-VLLGA---PTRAGVSSDAITI 355 >gi|260663757|ref|ZP_05864644.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN] gi|260551706|gb|EEX24823.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN] Length = 431 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 26/238 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D TG V+ + AS++KL+T V+ +K K T + ++K ++ Sbjct: 64 IDATTGQVLYAKNANTQLAIASISKLITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSENT 123 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T G + T+ + ++KSA+ A+ ++ + + FV+ M K G++ Sbjct: 124 EYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQTFVKKAGVTD 183 Query: 150 THFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ Q G Y TA D+A L+ + ++P ++ ++ I Sbjct: 184 AKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKLAQYLIKNYPSLLNITKMTSTTI 243 Query: 196 K-------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K P + A T + DG+KTG + +G V++ +I V+L A Sbjct: 244 DGTTVTTINKMLPGQSDAP-TQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVLHA 300 >gi|256848334|ref|ZP_05553777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis 101-4-CHN] gi|256714932|gb|EEU29910.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis 101-4-CHN] Length = 417 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 43/284 (15%) Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPA 54 M+ L++ M+ + F F+S A+ ++ +D TG ++ + + A Sbjct: 6 MQLGLLLATFVMIFSCFTAAFISTAQADQTKLEAKAAITMDAQTGQILFQQNANQKLAVA 65 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKL 110 S TK++T V+ + + K I I +K ++++ SN K G T+ + + Sbjct: 66 SCTKILTLAVIEQDIADGKLSWNQKIKINRKVAKTSTDWHFSNVELKAGHRYTVRSLCES 125 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT---- 166 +++ SA+ A A+A + + F + M +K G+ N G+ +G + Sbjct: 126 MMIVSADGSAEALALASAGSTAAFNKKMQAVAKKAGVHDAKIYNMIGL-SNGELGSNGIK 184 Query: 167 -----------ARDMAILSWRIKTDFPQYMHYFQIKGLEIK------------GKKYPNT 203 A+DMA++S + T +P ++ + +E K PN Sbjct: 185 GVSKKAENAFSAKDMALISRYLVTKYPDALNITKATNVEFKVDDKQSYNMLNINGMLPNN 244 Query: 204 NWAV--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 A GT DG+KTG T +G V + + ++ LI V+LG Sbjct: 245 GNAPKNGTM---DGLKTGSTDKAGNCFVGTGVFNNRRLITVVLG 285 >gi|145636368|ref|ZP_01792037.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH] gi|319775769|ref|YP_004138257.1| penicillin-binding protein 7 [Haemophilus influenzae F3047] gi|329123610|ref|ZP_08252170.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius ATCC 11116] gi|145270533|gb|EDK10467.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH] gi|317450360|emb|CBY86576.1| penicillin-binding protein 7 homolog precursor [Haemophilus influenzae F3047] gi|327469809|gb|EGF15274.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius ATCC 11116] Length = 292 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ ++ Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAV 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F++ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|218674624|ref|ZP_03524293.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56] Length = 248 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F +GK N + + G DG+ TG+T ASGFN+V++ G++ ++ V+LG Sbjct: 5 FSAASFNFRGKTVRGHNNLMYRYQGMDGINTGYTNASGFNLVSAVRDGNRRVVGVVLGGR 64 Query: 248 DRNTRNKVSASLL 260 +R+ A+LL Sbjct: 65 TARSRDAKMAALL 77 >gi|326789965|ref|YP_004307786.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326540729|gb|ADZ82588.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 450 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 26/209 (12%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALK 109 PAS TK++TA V L IT ++ A++ P++S+ K G T+ + L Sbjct: 54 PASTTKILTALAVLQDLPTDMI-----ITKTQTAADEVPADSSQIGLKVGDQYTVLDGLY 108 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +++ S N + +A + F + MN + + +HF+N HG HYTT D Sbjct: 109 AVLMASDNYVCYDLALADKGNISTFAKRMNGLAIDSNALFSHFINPHGYHDPDHYTTPYD 168 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----GTFLGAD---------G 215 ++ ++ + D P +I G K N++ + L + Sbjct: 169 LSQIA-KAAFDDPILT---KIAGTSSYNFKVANSDVVIPLTHTSALLDKNSPYYNSHVVA 224 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVIL 244 KTG+ +G +VA A+ + LI V++ Sbjct: 225 SKTGYHTPAGRTLVAKAVYDNIELIGVVM 253 >gi|194289422|ref|YP_002005329.1| d-alanyl-d-alanine carboxypeptidase [Cupriavidus taiwanensis LMG 19424] gi|193223257|emb|CAQ69262.1| putative D-Alanyl-D-alanine carboxypeptidase [Cupriavidus taiwanensis LMG 19424] Length = 378 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D N+ V+ + AS+TKLMTA VV +LT IT +E S Sbjct: 112 VMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDSRLPMDEVLT--ITEEDRDTEKH-S 168 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+ +T L L ++ S N A A+ FVQ MN ++ LG++ +HF Sbjct: 169 SSRLRFGTQLTRQELLLLALMSSENRAASALGRHYPGGLPAFVQAMNRKARELGMNDSHF 228 Query: 153 MNAHGVVQHGHYTTA----------RDMAILSWRIKTD-----FPQYMHYFQIKGLEIKG 197 +++ G+ + R+ I + +T+ + HY L ++G Sbjct: 229 VDSSGLSSSNVSSATDLVRMVNAAYRNPTIREFSTQTEHEVNVLGRTQHYVSTNRL-VRG 287 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVIL---GALDR 249 NW +G KTGF +G +V A +QG ++++ V L G L R Sbjct: 288 -----GNWEIGL------QKTGFISEAGQCLVMQARVQG-RNVVMVFLDSAGKLSR 331 >gi|221124426|ref|XP_002164451.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 257 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 ++D +T V+ + AS+TKLMT VV E + + I I++ + Sbjct: 1 MVDQDTKEVLFSKNENAVLPIASITKLMTGVVV----SEARLSMDETIEITQADVDTEKG 56 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+S + G+ ++ L L ++ S N A A+ + + FV MN ++ LG++ T Sbjct: 57 SSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTDTQ 116 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGK--KYPNTN---- 204 ++ G+ + ++A+D+A L +D + + +E+ + +Y NTN Sbjct: 117 YVEPTGLNSR-NQSSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTLQYNNTNRLVK 175 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + TR Sbjct: 176 NPAWEIGL------QKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTR 220 >gi|331700813|ref|YP_004397772.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] gi|329128156|gb|AEB72709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri NRRL B-30929] Length = 434 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 41/251 (16%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT----------I 82 ++D TG V+ + ASL+KLMT Y+ KKA+ IT + Sbjct: 50 VMDAETGQVLYQKNGSTKRPIASLSKLMTLYLT------KKAIDNHQITWNQKVPVDDQL 103 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNT 141 + + Y K+ T+ + K ++ S+N A+A+ + + +F++ MN Sbjct: 104 RRMSKSYEVGGFRIKRSKEYTVRDLYKAALIASSNPSAIALGKLVGGGNNTEFIKMMNEQ 163 Query: 142 SKNLGLSAT---------------HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + G+ AT H+ H + + +A+ ++ ++ ++ FP Sbjct: 164 AHAWGIDATFVSSSGLDNTDLSKYHYQVPHTTSKAQNMVSAKAISTVAAKVLEIFPTITQ 223 Query: 187 YFQIKGLEIKGKKYPNTNWAV-GTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + +++ + N+N + G+ DG+KTGFT +G I + + LI Sbjct: 224 WSKQPSMKVGNQVLVNSNRLLPGSAFYHKSTHVDGLKTGFTVNAGLCITVTYWHDGRHLI 283 Query: 241 AVILGALDRNT 251 A I +D NT Sbjct: 284 ATI---IDSNT 291 >gi|153827672|ref|ZP_01980339.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2] gi|149737857|gb|EDM52762.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2] Length = 161 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%) Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 MKTG+T +G+++ +SA G+ LI+V++G+ +R S LLS GF Sbjct: 1 MKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGF 49 >gi|221196175|ref|ZP_03569222.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2M] gi|221202849|ref|ZP_03575868.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2] gi|221176783|gb|EEE09211.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2] gi|221182729|gb|EEE15129.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD2M] Length = 364 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 14/203 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS++KLMTA V ++ L + ++ N + + S + GS ++ + + + Sbjct: 150 ASISKLMTAVVA----RDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIAL 205 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A Sbjct: 206 MSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLAR 264 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFN 227 L D P ++ + ++ Y N++ V L KTGF SG Sbjct: 265 LVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHG 323 Query: 228 IVAS-AIQGDQSLIAVILGALDR 249 +V ++G ++ + V+LGA R Sbjct: 324 VVMRMRVKGRRTTV-VLLGAPTR 345 >gi|238895697|ref|YP_002920432.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae NTUH-K2044] gi|238548014|dbj|BAH64365.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 315 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 45 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPLDEMLTVDIS---HTPEMKGI 101 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 102 YSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 161 Query: 153 MNAHGVVQHGHYTTARDM 170 + G+ H + +TARD+ Sbjct: 162 VEPTGLSVH-NVSTARDL 178 >gi|221209869|ref|ZP_03582850.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD1] gi|221170557|gb|EEE03023.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia multivorans CGD1] Length = 364 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 14/203 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLI 112 AS++KLMTA V ++ L + ++ N + + S + GS ++ + + + Sbjct: 150 ASISKLMTAVVA----RDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIAL 205 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A Sbjct: 206 MSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLAR 264 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFN 227 L D P ++ + ++ Y N++ V L KTGF SG Sbjct: 265 LVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHG 323 Query: 228 IVAS-AIQGDQSLIAVILGALDR 249 +V ++G ++ + V+LGA R Sbjct: 324 VVMRMRVKGRRTTV-VLLGAPTR 345 >gi|206563597|ref|YP_002234360.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia J2315] gi|198039637|emb|CAR55605.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein precursor) [Burkholderia cenocepacia J2315] Length = 360 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 24/208 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L +++ + S + GS ++ + ++ Sbjct: 146 ASISKLMTAVVARDADRPLNGVLRV---TARDRDTIKFTGSRLQVGSELSRREMFHIALM 202 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 203 SSENRAAAALSRDYPGGRVAFVKAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLARL 261 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----------KTGFTC 222 D + YF ++ P V ++ +D + KTGF Sbjct: 262 VGAAAQD--PLIRYFST---DLSTTVRPGDGELV--YVNSDPLVRYRRLPIRLQKTGFIN 314 Query: 223 ASGFNIVAS-AIQGDQSLIAVILGALDR 249 SG +V ++G + + V+LGA R Sbjct: 315 ESGHGVVMRMRVKGRRETV-VLLGAPTR 341 >gi|262040149|ref|ZP_06013402.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042502|gb|EEW43520.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 318 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 48 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPLDEMLTVDIS---HTPEMKGI 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 105 YSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L I ++ QY Q+ + + + + +++ F Sbjct: 165 VEPTGLSVH-NVSTARDLTKL--LIASE--QYPLIGQLSTTKEETATFAHPAYSL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G ++ + + + V++ A + T Sbjct: 219 TNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVMDAFGKYT 268 >gi|152971112|ref|YP_001336221.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955961|gb|ABR77991.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and 8 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 316 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 46 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPLDEMLTVDIS---HTPEMKGI 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 103 YSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 162 Query: 153 MNAHGVVQHGHYTTARDM 170 + G+ H + +TARD+ Sbjct: 163 VEPTGLSVH-NVSTARDL 179 >gi|266623881|ref|ZP_06116816.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288864301|gb|EFC96599.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 145 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEY 89 L+D +TG ++ + + PAS+TKL+TA VV + L + S+NA E Sbjct: 48 LMDADTGTILYGKNINEAYYPASITKLLTAQVVL-----DRCRLDEVVEFSQNAVYNVEQ 102 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + + G M++ + L LI+ SAN++A A+AE Sbjct: 103 GSKSLSMDTGDRMSVKDCLYGLILHSANEVANALAE 138 >gi|50121716|ref|YP_050883.1| D-alanyl-D-alanine endopeptidase [Pectobacterium atrosepticum SCRI1043] gi|49612242|emb|CAG75692.1| penicillin-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 315 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D HV+ + PD AS+TKLMTA VV +++ I+ +K E Sbjct: 48 VVDLRDNHVLYSSNPDVVVPIASVTKLMTALVVLDANLPLDEIISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A + F+ MN ++ LG++ T + Sbjct: 105 YSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIHAMNAKARALGMAHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NT 203 + G + + +TARD+ L K QY Q+ + K + NT Sbjct: 165 VEPTG-LSINNVSTARDLTKLLIASK----QYPLLSQLSTTQEKTATFTHPAYSLPFRNT 219 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W++ KTGFT +G +V + + + V+L A + T Sbjct: 220 NHLVYKADWSIQL------TKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYT 268 >gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119868045|ref|YP_937997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] gi|108769349|gb|ABG08071.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119694134|gb|ABL91207.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] Length = 291 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 22/246 (8%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A + PAS K + A VV + L T I + + Sbjct: 45 WIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVL-----DEVPLDTTIAAEEADTRVE 99 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G T L+ L++ S ND A +A L + V MN + LG T Sbjct: 100 CNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSA-VAKMNAKAAQLGAHGT 158 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMH-------YFQIKGLEIKGKKYP 201 + + G+ G ++TA D+A++ +R P + F K E Sbjct: 159 NVVTPSGLDGPGMPFWSTAHDLAVI-FRAAMANPVFAQITAMPSTVFPTKAGE---AVLV 214 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN---TRNKVSAS 258 N N + + GA G KTGFT + V +A + + L+ V++ L + T +A Sbjct: 215 NQNELLHRYPGAIGGKTGFTDIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAG 274 Query: 259 LLSMGF 264 LL GF Sbjct: 275 LLDWGF 280 >gi|91228812|ref|ZP_01262719.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] gi|91187617|gb|EAS73942.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] Length = 125 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKN A Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF 96 +P S+ F Sbjct: 103 FPDSSKMF 110 >gi|329999103|ref|ZP_08303309.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3] gi|328538464|gb|EGF64581.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3] Length = 318 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 48 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPLDEMLTVDIS---HTPEMKGI 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 105 YSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G+ H + +TARD+ L I ++ QY Q+ + + + + +++ F Sbjct: 165 VEPTGLSVH-NVSTARDLTKL--LIASE--QYPLIGQLSTTKEETATFAHPAYSL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT A+G ++ + + + V++ A + T Sbjct: 219 TNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVMDAFGKYT 268 >gi|282934688|ref|ZP_06339931.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] gi|281301263|gb|EFA93564.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] Length = 395 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 36/273 (13%) Query: 7 IIAMAMLSNI-FPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++A+ ++ I F ++ + ++ P ++D TG ++ + + ASLTK++T Sbjct: 13 LVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATRKYAVASLTKILT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + + K I ISK+ A ++ SN T+ + ++ +++ SA+ Sbjct: 73 LAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIESMMIVSAD 132 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHG 162 A+A + + F M +K G+ N G+ Q Sbjct: 133 GSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLPKIDDNQEN 192 Query: 163 HYTTARDMAILSWRIKTDFPQYMHY-------FQI-KGLEIKGKK--YPNTNWAVGTFLG 212 + +A+DMA++S + +P+ ++ F+I + EIK + Y G G Sbjct: 193 QF-SAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYMLEGMGYGPKKG 251 Query: 213 A-DGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 DG+KTG T A+G+ V + ++ +I V+L Sbjct: 252 TMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVL 284 >gi|171315671|ref|ZP_02904905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MEX-5] gi|171099203|gb|EDT43976.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MEX-5] Length = 359 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 23/219 (10%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L S++ + S G+ ++ + ++ Sbjct: 145 ASISKLMTAVVARDADRPLNGVLRV---TSRDRDTIKFTGSRLPIGAELSRRQMFHIALM 201 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 202 SSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPH-NVSTAEDLARL 260 Query: 174 SWRIKTDFPQYMHYF--------QIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCAS 224 D + YF Q E+ Y N++ V L KTGF S Sbjct: 261 VGAAAQD--PLIRYFSTDTSTTVQAGDGEL---LYVNSDPLVRNGRLPIRLQKTGFINES 315 Query: 225 GFNIVAS-AIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 G +V ++G + I V+LGA TR VS+ L + Sbjct: 316 GHGVVMRMRVKGRRETI-VLLGA---PTRAGVSSDALKI 350 >gi|256851221|ref|ZP_05556610.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 27-2-CHN] gi|260660645|ref|ZP_05861560.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 115-3-CHN] gi|297206087|ref|ZP_06923482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii JV-V16] gi|256616283|gb|EEU21471.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 27-2-CHN] gi|260548367|gb|EEX24342.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 115-3-CHN] gi|297149213|gb|EFH29511.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii JV-V16] Length = 397 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 36/273 (13%) Query: 7 IIAMAMLSNI-FPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++A+ ++ I F ++ + ++ P ++D TG ++ + + ASLTK++T Sbjct: 15 LVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATRKYAVASLTKILT 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 V+ + + K I ISK+ A ++ SN T+ + ++ +++ SA+ Sbjct: 75 LAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIESMMIVSAD 134 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHG 162 A+A + + F M +K G+ N G+ Q Sbjct: 135 GSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLPKIDDNQEN 194 Query: 163 HYTTARDMAILSWRIKTDFPQYMHY-------FQI-KGLEIKGKK--YPNTNWAVGTFLG 212 + +A+DMA++S + +P+ ++ F+I + EIK + Y G G Sbjct: 195 QF-SAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYMLEGMGYGPKKG 253 Query: 213 A-DGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 DG+KTG T A+G+ V + ++ +I V+L Sbjct: 254 TMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVL 286 >gi|328880472|emb|CCA53711.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC 10712] Length = 421 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 30/232 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT---TPITISKNAS 87 + + D ++G V+A PAS K + A + +E A T + +T + S Sbjct: 83 WVVADASSGEVLAARNAHRKLPPASTLKALFALTALPY-QEPSAQHTVADSELTGIGDGS 141 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G T + + + + S ND AV + ++ + + M +++LG Sbjct: 142 ----SLVGVKEGYTYKVSDLWNGVFLSSGND-AVHVLAAMNGGWESMSRRMQEKARSLGA 196 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 TH ++ G G ++A D+A+ R P + Y + +P +W+ Sbjct: 197 MDTHVVSPDGYDAPGQVSSAYDLAVFG-RAGLQDPAFTKYCSTAYAD-----FPAGSWSY 250 Query: 208 GT------FLGADG---------MKTGFTCASGFNIVASAIQGDQSLIAVIL 244 G GADG +K G+T +G ++++A +GD++L+ ++ Sbjct: 251 GIANTNRLLTGADGVARYPGLIGIKNGYTSNAGNTLISAARRGDRTLVVSVM 302 >gi|71065270|ref|YP_263997.1| murein-DD-endopeptidase [Psychrobacter arcticus 273-4] gi|71038255|gb|AAZ18563.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Psychrobacter arcticus 273-4] Length = 363 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 31/253 (12%) Query: 21 SIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKE 71 S +N +P T ++D TG I E D AS+TK+MTA VV ++E Sbjct: 104 SFGNSNMIPISTDSRSVAVIDAETGESIYEKDADIARPMASITKVMTAMVVLDAGLDMRE 163 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + + K AS S K G + L + ++KS N A ++A + Sbjct: 164 ELTLDPEDFVGPKRAS------SNLKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGY 217 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMH 186 F++ MN ++ LG+S F + G+ + + ++ D+ A ++ + F Sbjct: 218 SAFMRAMNRKAQELGMSTAFFGDPTGLDKR-NIASSNDLVKMVRAAGNYDVIRRFSTTKS 276 Query: 187 Y-FQIKGLEIKGKKYPNTNWAVGTFLGADG------MKTGFTCASGFNIVASAIQGDQSL 239 Y F + + Y N + L DG KTGF +G +V ++ Sbjct: 277 YDFFVSNYASGNRTYKANNT---SSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPA 333 Query: 240 IAVILGALDRNTR 252 I VILGA TR Sbjct: 334 IIVILGANSSATR 346 >gi|206580756|ref|YP_002237447.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342] gi|290508576|ref|ZP_06547947.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55] gi|206569814|gb|ACI11590.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342] gi|289777970|gb|EFD85967.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55] Length = 316 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 46 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPMDEMLTVDIS---HTPEMKGI 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 103 YSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 162 Query: 153 MNAHGVVQHGHYTTARDM 170 + G+ H + +TARD+ Sbjct: 163 VEPTGLSVH-NVSTARDL 179 >gi|93005508|ref|YP_579945.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter cryohalolentis K5] gi|92393186|gb|ABE74461.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Psychrobacter cryohalolentis K5] Length = 364 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 31/253 (12%) Query: 21 SIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKE 71 S +N +P T ++D TG I + D AS+TK+MTA VV ++E Sbjct: 105 SFGNSNMIPISTDSRSVAVIDAETGESIYQKDADIARPMASITKVMTAIVVLDAGLDMRE 164 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + + K AS S K G + L + ++KS N A ++A + Sbjct: 165 ELTLDPEDFVGPKRAS------SNLKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGY 218 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMH 186 F++ MN ++ LG+S F + G+ + + ++ D+ A ++ + F Sbjct: 219 SAFIRAMNRKAQELGMSTAFFGDPTGLDKR-NVASSNDLVKMVRAAGNYDVIRRFSTTKS 277 Query: 187 Y-FQIKGLEIKGKKYPNTNWAVGTFLGADG------MKTGFTCASGFNIVASAIQGDQSL 239 Y F + + Y N + L DG KTGF +G +V ++ Sbjct: 278 YDFFVSNFSSGNRTYKANNT---SSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPA 334 Query: 240 IAVILGALDRNTR 252 I VILGA TR Sbjct: 335 IIVILGANSSATR 347 >gi|313472221|ref|ZP_07812713.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 1153] gi|313449097|gb|EEQ68608.2| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 1153] Length = 313 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 31/242 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++ + + ASLTK++T V+ + + K I ISK+ A + Sbjct: 1 MMDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADD 60 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + SN T+ + ++ +++ SA+ A+A + + F M +K G+ Sbjct: 61 WHFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVK 120 Query: 149 ATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 N G+ Q + +A+DMA++S + +P+ ++ + K Sbjct: 121 NPEIYNMIGLSNGELGDLKLPKIDDNQENQF-SAKDMALVSKYLIDKYPEVLNITKTKYA 179 Query: 194 EIKGKK----------YPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAV 242 K ++ Y G G DG+KTG T A+G+ V + ++ +I V Sbjct: 180 NFKIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITV 239 Query: 243 IL 244 +L Sbjct: 240 VL 241 >gi|238798922|ref|ZP_04642387.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969] gi|238717232|gb|EEQ09083.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969] Length = 313 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T I N D AS+TKLMTA VV +++ I +K E Sbjct: 51 VVDLQTNKAIYANNADEVVPIASITKLMTAMVVLDAKLPLDEIISVDIHQTK---EMKGV 107 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 108 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTKTRY 167 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L K QY Q+ K + N+ + F Sbjct: 168 VEPTG-LSINNVSTARDLTKLLIATK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 221 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 222 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 271 >gi|288934371|ref|YP_003438430.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella variicola At-22] gi|288889100|gb|ADC57418.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella variicola At-22] Length = 316 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +I + PD AS+TK+MTA VV MLT I+ + E Sbjct: 46 IVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHLPMDEMLTVDIS---HTPEMKGI 102 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ L L ++ S N A ++A F++ MN ++ LG++ T + Sbjct: 103 YSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRY 162 Query: 153 MNAHGVVQHGHYTTARDM 170 + G+ H + +TARD+ Sbjct: 163 VEPTGLSVH-NVSTARDL 179 >gi|317491244|ref|ZP_07949680.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920791|gb|EFV42114.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 315 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T +VI + PD AS+TKLMTA V L K AM N E Sbjct: 50 VVDLKTHNVIYSSNPDVQVPIASITKLMTAMVA---LDAKPAMDEVISVDIHNTKELKGV 106 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + + ++ S N A ++A F++ MN +++LG++ T + Sbjct: 107 FSRVRVGSEVSRRQMMLMALMSSENRAAASLAHHYPGGYNAFIKAMNAKARSLGMTHTRY 166 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---------KKYPNT 203 + G + + +TARD+ L K Y Q+ E + + + NT Sbjct: 167 VEPTG-LSVKNVSTARDLTKLLAASK----NYPLISQLSTTETQSVTFSNPVYTETFNNT 221 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N WA+ KTGFT +G + G + + V+L A + T Sbjct: 222 NHLVRNDKWAIQL------TKTGFTNQAGHCLAMRTTIGGRQVALVVLDAFGKYT 270 >gi|227541842|ref|ZP_03971891.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182285|gb|EEI63257.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 222 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 12/133 (9%) Query: 20 LSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 +S+ E LP + + D +TG + A P + PAS+ K++ A V L Sbjct: 6 VSVPEGFSLPDGLLAHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAIDRLS--- 62 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 LT + ++ +S+ S++ G T+D+ L L++ S ND A AIA+ L +++ Sbjct: 63 --LTDSMEVTAESSDQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQ-LLGGDEE 119 Query: 134 FVQHMNNTSKNLG 146 ++ +N + +LG Sbjct: 120 ALRMVNARALDLG 132 >gi|16272312|ref|NP_438525.1| penicillin-binding protein 7 [Haemophilus influenzae Rd KW20] gi|260580573|ref|ZP_05848401.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW] gi|1172032|sp|P44664|PBP7_HAEIN RecName: Full=D-alanyl-D-alanine endopeptidase; Short=DD-endopeptidase; AltName: Full=Penicillin-binding protein 7 homolog; Short=PBP-7; Flags: Precursor gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd KW20] gi|260092915|gb|EEW76850.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW] Length = 292 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F++ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKQKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|260898942|ref|ZP_05907383.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|308089342|gb|EFO39037.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] Length = 123 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASE 88 Y L+D ++G V+AE + +PASLTK+MT+YV+ L +TISKN A Sbjct: 43 YVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKN 102 Query: 89 YPPSNSTF 96 +P S+ F Sbjct: 103 FPDSSKMF 110 >gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus ATCC 19977] gi|169242282|emb|CAM63310.1| Probable D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus] Length = 287 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 12/241 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D ++G ++A P PAS K++ A V L E T + +E Sbjct: 45 WLVADLDSGQILAARDPYATHAPASTIKVLLALVA---LDEVPMDATVVADAADAKAEC- 100 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + K G T T L +++S ND A +A L + V MN + LG ++T Sbjct: 101 -NCVGIKAGQTYTARELLDAALLESGNDAANTLAH-LLGGRQATVDKMNAKAAALGATST 158 Query: 151 HFMNAHGVVQHGH--YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 H + G+ G T+ D+A++ +R P + G+ N N + Sbjct: 159 HTDSPSGLDAPGMDMRTSPHDLAVI-FRAALANPVFAEITAQPSAPFPGRGLHNQNELMY 217 Query: 209 TFLGADGMKTGFT-CASGFNIVASAIQGDQSLIAVILGALDRN--TRNKVSASLLSMGFY 265 + G G KTGFT A +VA+ G + +++++ G + T +ASL GF Sbjct: 218 RYPGVIGGKTGFTDIARKTYVVAAERDGKRLVVSMMYGLVHEGGPTYWDQAASLFDWGFV 277 Query: 266 N 266 N Sbjct: 278 N 278 >gi|251790099|ref|YP_003004820.1| D-alanyl-D-alanine endopeptidase [Dickeya zeae Ech1591] gi|247538720|gb|ACT07341.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya zeae Ech1591] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D V+ + PD AS+TKLMTA VV + L+ I+ +K E Sbjct: 48 VVDLRNNDVLYSSNPDVVVPIASVTKLMTAMVVLDANQPLDERLSVDISQTK---EMQGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A + F+ MN +K LG++ T + Sbjct: 105 YSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAKALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAIL 173 + G + + +TARD+ L Sbjct: 165 VEPTG-LSTSNVSTARDLTKL 184 >gi|238021454|ref|ZP_04601880.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147] gi|237868434|gb|EEP69440.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147] Length = 336 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 25/240 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG V+ + + AS++KLM+A V+ + L + + T I + Sbjct: 101 IMNAKTGQVLYQKNMSSVRSIASISKLMSAMVLLDAHLDMNEQITITEAEIDR----LKG 156 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+A + FV MN +++LG++ + Sbjct: 157 TGSRLSVGTTLTRAQLLHLGLMSSENRAIHALARTYPGGMSAFVAAMNAKARSLGMANSR 216 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----------KGKKY 200 F G+ + +TA ++ + HY +I+ L K ++Y Sbjct: 217 FYEPTGLDPR-NVSTALELGKMVQAAS-------HYAKIRELTTSNYGQAYTSNGKLQQY 268 Query: 201 PNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + KTG+ +G ++V A G ++ V+LG+ +R + SL Sbjct: 269 KNTNVLVREGLMNITLQKTGYIREAGRSMVLQAKMGQTPVVIVVLGSATSASRASDARSL 328 >gi|76799308|ref|ZP_00781473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21] gi|76585335|gb|EAO61928.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21] Length = 199 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 29/108 (26%) Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT--------------- 209 TTARD++IL++ +P ++Y KYP VGT Sbjct: 6 TTARDLSILTYHFLKKYPDILNY----------TKYPEVKAMVGTPYEETFTTYNYSTPG 55 Query: 210 ----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G DG+KTG + ++ FN + +A + + LI V+LG D + ++ Sbjct: 56 AKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 103 >gi|265999457|ref|ZP_06111698.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|263094079|gb|EEZ18001.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|326409094|gb|ADZ66159.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis M28] gi|326538798|gb|ADZ87013.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis M5-90] Length = 188 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%) Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 4 YAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 55 >gi|145632611|ref|ZP_01788345.1| adenylate kinase [Haemophilus influenzae 3655] gi|144986806|gb|EDJ93358.1| adenylate kinase [Haemophilus influenzae 3655] gi|309972477|gb|ADO95678.1| Putative penicillin-binding protein 7 [Haemophilus influenzae R2846] Length = 292 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F++ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|145631817|ref|ZP_01787576.1| penicillin-binding protein 7 [Haemophilus influenzae R3021] gi|144982536|gb|EDJ90090.1| penicillin-binding protein 7 [Haemophilus influenzae R3021] Length = 292 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F++ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|5053120|gb|AAD38860.1|AF156692_1 penicillin-binding protein 4 [Neisseria gonorrhoeae] Length = 312 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 30/256 (11%) Query: 14 SNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SF 68 S I+P + A T L + +++ TG ++ + D AS++KLM+A VV + Sbjct: 54 STIYPADTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDAN 113 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + TP I + + S G+ +T L L ++ S N A+ + Sbjct: 114 LDMNETVTITPDEIDR----LKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYP 169 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS------WRIKTDFP 182 FV MN +++LG+ + F G + + +TA+D++++ +I+T+ Sbjct: 170 GGMGAFVAAMNRKAQSLGMYGSRFYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNST 228 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM------KTGFTCASGFNIVASAIQGD 236 Q K + + Y N+N V +GM KTG+ +G ++V A + Sbjct: 229 SNYASVQTKNGQ---QNYKNSNALV-----REGMWNIELQKTGYIREAGRSMVVKANIQN 280 Query: 237 QSLIAVILGALDRNTR 252 Q + V+L + TR Sbjct: 281 QPVTIVLLNSPTSATR 296 >gi|172063483|ref|YP_001811134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MC40-6] gi|171996000|gb|ACB66918.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria MC40-6] Length = 359 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 24/229 (10%) Query: 33 LLDTNTG-HVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 LLD ++G ++A N P AS++KLMTA V + +L S++ Sbjct: 124 LLDVDSGTPLLARNA--RTVRPIASISKLMTAVVARDADRPLNGVLRV---TSRDRDTIK 178 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + S G+ ++ + ++ S N A A++ FV+ MN ++ LG+ T Sbjct: 179 FTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHT 238 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF--------QIKGLEIKGKKYPN 202 HF G+ H + +TA D+A L D + YF Q E+ Y N Sbjct: 239 HFREPTGLSPH-NVSTAEDLARLVGAAAQD--PLIRYFSTDTSTTVQAGDGEL---LYVN 292 Query: 203 TNWAV-GTFLGADGMKTGFTCASGFNIVAS-AIQGDQSLIAVILGALDR 249 ++ V L KTGF SG +V ++G + I V+LGA R Sbjct: 293 SDPLVRNGSLPIRLQKTGFINESGHGVVMRMRVKGRRETI-VLLGAPTR 340 >gi|59800773|ref|YP_207485.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA 1090] gi|194098057|ref|YP_002001105.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae NCCP11945] gi|239998517|ref|ZP_04718441.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 35/02] gi|240013642|ref|ZP_04720555.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae DGI18] gi|240016081|ref|ZP_04722621.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA6140] gi|240080223|ref|ZP_04724766.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA19] gi|240112436|ref|ZP_04726926.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11] gi|240115176|ref|ZP_04729238.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18] gi|240117460|ref|ZP_04731522.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1] gi|240120712|ref|ZP_04733674.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID24-1] gi|240123016|ref|ZP_04735972.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332] gi|240125268|ref|ZP_04738154.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679] gi|254493238|ref|ZP_05106409.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291] gi|260441006|ref|ZP_05794822.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae DGI2] gi|268594377|ref|ZP_06128544.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02] gi|268596373|ref|ZP_06130540.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19] gi|268598501|ref|ZP_06132668.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11] gi|268600854|ref|ZP_06135021.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18] gi|268603159|ref|ZP_06137326.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1] gi|268681640|ref|ZP_06148502.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332] gi|268683868|ref|ZP_06150730.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679] gi|291044337|ref|ZP_06570046.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2] gi|293399525|ref|ZP_06643678.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7) [Neisseria gonorrhoeae F62] gi|59717668|gb|AAW89073.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA 1090] gi|193933347|gb|ACF29171.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae NCCP11945] gi|226512278|gb|EEH61623.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291] gi|268547766|gb|EEZ43184.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02] gi|268550161|gb|EEZ45180.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19] gi|268582632|gb|EEZ47308.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11] gi|268584985|gb|EEZ49661.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18] gi|268587290|gb|EEZ51966.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1] gi|268621924|gb|EEZ54324.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332] gi|268624152|gb|EEZ56552.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679] gi|291011231|gb|EFE03227.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2] gi|291610094|gb|EFF39216.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7) [Neisseria gonorrhoeae F62] gi|317163793|gb|ADV07334.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae TCDC-NG08107] Length = 312 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 30/256 (11%) Query: 14 SNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SF 68 S I+P + A T L + +++ TG ++ + D AS++KLM+A VV + Sbjct: 54 STIYPADTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDAN 113 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + + TP I + + S G+ +T L L ++ S N A+ + Sbjct: 114 LDMNETVTITPDEIDR----LKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYP 169 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS------WRIKTDFP 182 FV MN +++LG+ + F G + + +TA+D++++ +I+T+ Sbjct: 170 GGMGAFVAAMNRKAQSLGMYGSRFYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNST 228 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM------KTGFTCASGFNIVASAIQGD 236 Q K + + Y N+N V +GM KTG+ +G ++V A + Sbjct: 229 SNYASVQTKNGQ---QNYKNSNALV-----REGMWNIELQKTGYIREAGRSMVVKANIQN 280 Query: 237 QSLIAVILGALDRNTR 252 Q + V+L + TR Sbjct: 281 QPVTIVLLNSPTSATR 296 >gi|260221036|emb|CBA29200.1| D-alanyl-D-alanine endopeptidase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 310 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 ++D +T V+ + AS+TKLMT VV E + + I I++ + Sbjct: 54 VVDQDTKEVLFSKNENAVLPIASITKLMTGVVV----SEARLSMDETIEITQADVDTEKG 109 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+S + G+ ++ L L ++ S N A A+ + + FV MN ++ LG++ T Sbjct: 110 SSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTDTQ 169 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGK--KYPNTN---- 204 ++ G+ + ++A+D+A L +D + + +E+ + +Y NTN Sbjct: 170 YVEPTGLNSR-NQSSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTLQYNNTNRLVK 228 Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A + LI V L + + TR Sbjct: 229 NPAWEIGL------QKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTR 273 >gi|115358748|ref|YP_775886.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ambifaria AMMD] gi|115284036|gb|ABI89552.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia ambifaria AMMD] Length = 359 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 20/206 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L S++ + S G+ ++ + ++ Sbjct: 145 ASISKLMTAVVARDADRPLNGVLRV---TSRDRDTIKFTGSRLPIGAELSRRQMFHIALM 201 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV+ MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 202 SSENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPH-NVSTAEDLARL 260 Query: 174 SWRIKTDFPQYMHYF--------QIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCAS 224 D + YF Q E+ Y N++ V L KTGF S Sbjct: 261 VGAAAQD--PLIRYFSTDTSTTVQAGDGEL---VYVNSDPLVRNGSLPIRLQKTGFINES 315 Query: 225 GFNIVAS-AIQGDQSLIAVILGALDR 249 G +V ++G + I V+LGA R Sbjct: 316 GHGVVMRMRVKGRRETI-VLLGAPTR 340 >gi|296840908|ref|ZP_06863761.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria polysaccharea ATCC 43768] gi|296839544|gb|EFH23482.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria polysaccharea ATCC 43768] Length = 335 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 100 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 155 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 156 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSR 215 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 216 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 271 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 272 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 319 >gi|328887221|emb|CCA60460.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 ASLTK+MTA+V+ K I + + A+ S + G + L+ Sbjct: 85 ASLTKVMTAHVILEEHPLKPGESGPMIEVDRQAAYEVGVGGESTVPLQAGRRYSQRQLLE 144 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +L++ S N++A +A T++ F + M T+ LG+ + + A G+ T A Sbjct: 145 MLLIPSGNNVARLLARWDSGTQEAFAEKMQRTAGGLGMKDSTYTGASGIEVTTTSTAADQ 204 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 +A+ +K + + + + G NTN + T G G+KTG + +G N+ Sbjct: 205 LALARKAMKNAV--FREIVGTRSVTVPGVGTITNTNPLLDTP-GVVGIKTGSSTPAGGNL 261 Query: 229 V 229 + Sbjct: 262 L 262 >gi|163857870|ref|YP_001632168.1| D-alanyl-D-alanine carboxypeptidase [Bordetella petrii DSM 12804] gi|163261598|emb|CAP43900.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella petrii] Length = 385 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV + ML IT + ++S G+ ++ + L L ++ Sbjct: 167 ASISKLMTALVVVDANQPMDQMLE--IT-DDDVDTLKHTSSRLVVGTRLSRGDMLHLALM 223 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ + FV+ MN+ ++ LG+++THF+ G+ + ++ RD+A L Sbjct: 224 SSENRAAHALGRNYPGGLPAFVEAMNHKARALGMTSTHFIEPTGLSSQ-NVSSPRDLARL 282 Query: 174 SWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAV 207 R + P Y E+ + + + NTN V Sbjct: 283 -LRAASQRPLIHRYSTDDQYEVDVANRTQVFRNTNLLV 319 >gi|254804631|ref|YP_003082852.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] gi|254668173|emb|CBA04859.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] Length = 369 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 134 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 189 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 190 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 249 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 250 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 305 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 306 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 353 >gi|260663920|ref|ZP_05864773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii SJ-7A-US] gi|260561806|gb|EEX27775.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii SJ-7A-US] Length = 397 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 31/242 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++ + + ASLTK++T V+ + + K I ISK+ A + Sbjct: 46 MMDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADD 105 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + SN T+ + ++ +++ SA+ A+A + + F M +K G+ Sbjct: 106 WHFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVK 165 Query: 149 ATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 N G+ Q + +A+DMA++S + +P+ ++ + K Sbjct: 166 NPEIYNMIGLSNGELGDLKLPKIDDNQENQF-SAKDMALVSKYLIDKYPEVLNITKTKYA 224 Query: 194 EIKGKK----------YPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAV 242 K ++ Y G G DG+KTG T A+G+ V + ++ +I V Sbjct: 225 NFKIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITV 284 Query: 243 IL 244 +L Sbjct: 285 VL 286 >gi|213418658|ref|ZP_03351724.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 88 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 93 NSTFKKGSTMTLDNALKLLI--------VKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 N FK S M L +++ + ++S ND VA+A+ ++ FV MN+ Sbjct: 7 NPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNA 66 Query: 145 LGLSATHFMNAHGVVQHGHYTT 166 LGL THF HG+ G Y++ Sbjct: 67 LGLKNTHFQTVHGLDADGQYSS 88 >gi|254669736|emb|CBA03920.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha153] Length = 369 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 134 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 189 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 190 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 249 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 250 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 305 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 306 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 353 >gi|238854687|ref|ZP_04645017.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 269-3] gi|282932922|ref|ZP_06338319.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 208-1] gi|238832477|gb|EEQ24784.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 269-3] gi|281302957|gb|EFA95162.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus jensenii 208-1] Length = 395 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 31/242 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++ + + ASLTK++T V+ + + K I ISK+ A + Sbjct: 44 MMDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADD 103 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 + SN T+ + ++ +++ SA+ A+A + + F M +K G+ Sbjct: 104 WHFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVK 163 Query: 149 ATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 N G+ Q + +A+DMA++S + +P+ ++ + K Sbjct: 164 NPEIYNMIGLSNGELGDLKLPKIDDNQENQF-SAKDMALVSKYLIDKYPEVLNITKTKYA 222 Query: 194 EIKGKK----------YPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAV 242 K ++ Y G G DG+KTG T A+G+ V + ++ +I V Sbjct: 223 NFKIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITV 282 Query: 243 IL 244 +L Sbjct: 283 VL 284 >gi|304387942|ref|ZP_07370115.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC 13091] gi|304338039|gb|EFM04176.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC 13091] Length = 316 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 81 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 137 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 197 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 252 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 300 >gi|261392880|emb|CAX50461.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase; DD-peptidase; DD-carboxypeptidase) [Neisseria meningitidis 8013] gi|325203838|gb|ADY99291.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M01-240355] Length = 312 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 133 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 193 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 248 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 296 >gi|240127722|ref|ZP_04740383.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035] gi|268686110|ref|ZP_06152972.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035] gi|268626394|gb|EEZ58794.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035] Length = 312 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 193 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 248 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 296 >gi|218460577|ref|ZP_03500668.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhizobium etli Kim 5] Length = 219 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 DG+KTG+T ASGFN+V++ G++ ++ V+LG +R+ A+LL Sbjct: 2 DGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDAKMAALL 48 >gi|316983735|gb|EFV62716.1| D-alanyl-D-alanine endopeptidase [Neisseria meningitidis H44/76] gi|325197971|gb|ADY93427.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis G2136] Length = 312 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 193 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 248 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 296 >gi|21225333|ref|NP_631112.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] gi|9716157|emb|CAC01548.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 413 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 17/226 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D TG V+A N PAS K + A V L P ++ S Sbjct: 98 WVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRHEVGP----EDLSGIG 153 Query: 91 PSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S +G T + + + + S ND AV + SL M ++ LG Sbjct: 154 PGSSLVGVVEGQTYRVSDLWNGVFLNSGND-AVHVLASLTGGWSATAARMQAEARALGAR 212 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 TH + G G ++A D+A+ + DF +Y G Y NTN Sbjct: 213 DTHVRSPDGYDAPGQVSSAYDLAVFGREGLRRPDFARYCAKVDAMFPGRDGSSYGIMNTN 272 Query: 205 W------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 V + G G+K G+T +G ++A+A + ++L+ ++ Sbjct: 273 RLLTGADGVQPYPGLIGVKNGYTSNAGNTLIAAARRDGRTLVVTVM 318 >gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|145217244|gb|ABP46648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] Length = 313 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 9/158 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +TG V+A + + PAS K++ A VV L L + ++ + Sbjct: 67 WVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLDELP-----LDATVVANEADTRVE 121 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G+T T L+ L++ S ND A +A L + V MN + LG T Sbjct: 122 CNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDAA-VAKMNAKAAGLGAHGT 180 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMH 186 + G+ G ++T RD+A+L +R +P + Sbjct: 181 RAGSPSGIDGPGIDIWSTPRDLAVL-FRAAMAYPVFAQ 217 >gi|161869693|ref|YP_001598860.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442] gi|161595246|gb|ABX72906.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442] Length = 316 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 81 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 137 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 197 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 252 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 300 >gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|315263391|gb|ADU00133.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length = 297 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 9/158 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D +TG V+A + + PAS K++ A VV L L + ++ + Sbjct: 51 WVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLDELP-----LDATVVANEADTRVE 105 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G+T T L+ L++ S ND A +A L + V MN + LG T Sbjct: 106 CNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDAA-VAKMNAKAAGLGAHGT 164 Query: 151 HFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMH 186 + G+ G ++T RD+A+L +R +P + Sbjct: 165 RAGSPSGIDGPGIDIWSTPRDLAVL-FRAAMAYPVFAQ 201 >gi|171912390|ref|ZP_02927860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verrucomicrobium spinosum DSM 4136] Length = 325 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 22/199 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNALKLLI 112 LTK+ TA V + + K L T T+S A + N G +TL + L + Sbjct: 62 GGLTKMATALVALDWSEATKVPLNTLATVSPEALQIAGMNPLQLVPGDQITLRDLLYASM 121 Query: 113 VKS----ANDIAVAIAESLCKTEKK-------FVQHMNNTSKNLGLSATHFMNAHGV--V 159 + S A +A+ + + + + FV MN + G+ T F N HG+ Sbjct: 122 MSSDNVAATTLALFVGQDINYRRGRTGDPLAAFVTEMNYLAAREGMVNTKFTNPHGLENS 181 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQ-------IKGLEIKGKKYPNTNWAVGTFLG 212 + Y+TA DMA LS + P + Q ++G + NTN +G + Sbjct: 182 RSVPYSTAADMARLSMYAISRAPFRFYTNQKTRNITVLRGGQPVSVPMQNTNALLGVGM- 240 Query: 213 ADGMKTGFTCASGFNIVAS 231 DG+KTG T SG ++ S Sbjct: 241 IDGIKTGNTPRSGGCVIVS 259 >gi|218767872|ref|YP_002342384.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis Z2491] gi|121051880|emb|CAM08186.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis Z2491] gi|308388939|gb|ADO31259.1| putative D-alanyl-D-alanine-endopeptidase; penicillin-binding protein 4 [Neisseria meningitidis alpha710] gi|325127864|gb|EGC50770.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis N1568] gi|325131795|gb|EGC54495.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M6190] gi|325133735|gb|EGC56391.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M13399] gi|325136025|gb|EGC58635.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M0579] gi|325137845|gb|EGC60420.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis ES14902] gi|325144211|gb|EGC66518.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M01-240013] gi|325202452|gb|ADY97906.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M01-240149] gi|325206406|gb|ADZ01859.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis M04-240196] gi|325207796|gb|ADZ03248.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis NZ-05/33] Length = 312 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 193 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 248 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 296 >gi|319410119|emb|CBY90455.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase; DD-peptidase; DD-carboxypeptidase) [Neisseria meningitidis WUE 2594] Length = 316 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 81 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 137 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 197 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 252 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 300 >gi|121634547|ref|YP_974792.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis FAM18] gi|120866253|emb|CAM09994.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis FAM18] Length = 316 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 81 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 137 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 197 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 252 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 253 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 300 >gi|308234036|ref|ZP_07664773.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829] gi|328943433|ref|ZP_08240898.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM 15829] gi|327491402|gb|EGF23176.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM 15829] Length = 347 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 52/118 (44%) Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASL KLMT Y ++ + ++ + S + F T + L + Sbjct: 119 PASLVKLMTIYTALQHIQSLDQVAPIDKETFQHLLDENASMAGFVADEQTTYKDLLYGTL 178 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++S + A +A + FV+ MN+ + LGLSATH+ N G+ + A D+ Sbjct: 179 LRSGGECATNLAIHTAGSVDAFVKKMNDNAHKLGLSATHYTNPTGLDDPNQISCAADV 236 >gi|15676647|ref|NP_273791.1| penicillin-binding protein 4 [Neisseria meningitidis MC58] gi|7225978|gb|AAF41162.1| penicillin-binding protein 4 [Neisseria meningitidis MC58] gi|325140094|gb|EGC62623.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis CU385] Length = 312 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----IKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTALTRKKLLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 193 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 248 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 296 >gi|238757296|ref|ZP_04618483.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236] gi|238704674|gb|EEP97204.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236] Length = 311 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T VI N D AS+TKLMTA VV +++ I +K E Sbjct: 49 VVDLQTNKVIYANNIDEVVPIASITKLMTAMVVLDAKLPLDEVISVDIHQTK---ELKGV 105 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A F++ MN +K+LG++ T + Sbjct: 106 FSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMTHTRY 165 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ + K QY Q+ K + N+ + F Sbjct: 166 VEPTG-LSINNVSTARDLTKMLMASK----QYPLIGQLSTTTEKMATFREPNYTL-PFRN 219 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G + + G++ + V+L A + T Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYT 269 >gi|260582544|ref|ZP_05850334.1| penicillin-binding protein 7 [Haemophilus influenzae NT127] gi|260094355|gb|EEW78253.1| penicillin-binding protein 7 [Haemophilus influenzae NT127] Length = 292 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F+ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|229594902|ref|XP_001021203.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|225566509|gb|EAS00958.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 528 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 61/234 (26%) Query: 103 TLDNALKLLIVKSANDIAVAIAESL-C----------------------------KTEKK 133 T+++ L L++ S ND A+ +AE+ C ++ Sbjct: 309 TIEDLLYGLMLPSGNDAAICLAENFGCLLYFESIGQSKLFSEIQSVDVRDDQYVSDYQRY 368 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-----WRIKTDFPQ---YM 185 F++ MN + L T F N HG+ + + D+A L+ WR+ Q Y+ Sbjct: 369 FLKEMNKIAMQFLLRCTQFSNPHGLANKLNKSNCNDLAKLTYKAMKWRLFRKIVQTKTYL 428 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFL---GADGMKTGFT-----CASGF--NIVASAIQG 235 ++I + + Y W L G G+KTG T C S F N V S +Q Sbjct: 429 SKYKIINDQTQDVTYGTNFWKNTNKLLDQGYLGVKTGITTSAGSCLSSFYSNYVPS-LQK 487 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 + S+I ++LG + R + S+ I++ IK +Q SN++ Sbjct: 488 NISVIVIVLGGYKSDDRFDDTQSI-------------IDWYIKTLEEQQKSNKI 528 >gi|229846451|ref|ZP_04466559.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae 7P49H1] gi|229810544|gb|EEP46262.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae 7P49H1] Length = 292 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 14/225 (6%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F+ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY-PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 K K Y NTN V A KTG+ SG+N+V Sbjct: 175 LSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|325200563|gb|ADY96018.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis H44/76] Length = 272 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 37 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDANLDMNETVTITPDEIDR----LKG 92 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 93 TGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSR 152 Query: 152 FMNAHGVVQHGHYTTARDMAILS------WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 F G + + +TA+D++++ +I+T+ Q K + + Y N+N Sbjct: 153 FYEPTG-LNFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQ---QNYKNSNA 208 Query: 206 AVGTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V +GM KTG+ +G ++V A +Q + V+L + TR Sbjct: 209 LV-----REGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATR 256 >gi|319442898|ref|ZP_07992054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium variabile DSM 44702] Length = 425 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L D ++G+V+A P + PAS+ K++ V L + + +++ + Sbjct: 115 YVLYDVDSGNVLAAKDPYGLYRPASIIKILLVMVALDELDMDQK-----VKVTEEMATVD 169 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S G T + L+ L++ S ND A+A+A +L T+ V+ M + + +LG+ AT Sbjct: 170 GSKVGVGPGGKYTAEQLLQGLVMNSGNDAALALAGALGGTDAT-VEKMQSLADSLGVQAT 228 Query: 151 HFMNAHGVVQHGHYTTARDMAIL 173 +G+ TTA D+A++ Sbjct: 229 KVTTVNGLDTPEVQTTAYDLALV 251 >gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp. Marseille] gi|151280562|gb|ABR88972.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp. Marseille] Length = 274 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 17/252 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R L ++A+ S+ F A + ++D TG V+ E ASLTKLM Sbjct: 2 IRSILFVVAITAASSAF-----ATPVGSKHAIVIDEGTGQVVFEKNATDIVPIASLTKLM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDI 119 TA VV + K + I+I+++ + S+S G+ + L+L ++ S N Sbjct: 57 TAMVVL----DAKPDMHERISITEDDVDTLKFSSSRVPVGAVFSRHELLELALMSSDNRA 112 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A+A S + F + + + L L T+ G+ + + +TA D+A L+ + Sbjct: 113 AHALARSYPGGLEHFKVAVRSKAHMLNLRRTNIEEPTGLSPY-NTSTASDLAKLAL-AAS 170 Query: 180 DFPQYMHYFQIKG--LEIKG--KKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQ 234 +P + +++ G ++Y NTN VG + KTG+T +G I+ Sbjct: 171 KYPDIERITTVSNDLIDVNGRMRQYHNTNRLVGDKNWTISLSKTGYTQEAGRCIIMRVHA 230 Query: 235 GDQSLIAVILGA 246 + I V+L A Sbjct: 231 AGRDAIMVLLNA 242 >gi|255017615|ref|ZP_05289741.1| hypothetical protein LmonF_07370 [Listeria monocytogenes FSL F2-515] Length = 77 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 35/51 (68%) Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 KG K +TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A Sbjct: 20 KGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDA 70 >gi|319896693|ref|YP_004134886.1| penicillin-binding protein 7 homolog precursor [Haemophilus influenzae F3031] gi|317432195|emb|CBY80547.1| penicillin-binding protein 7 homolog precursor [Haemophilus influenzae F3031] Length = 292 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 20/228 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +LS + P ++A++ Y + D V+ + D AS+TKLMTA V F Sbjct: 5 ALFILS-LCPSFALAQS-----YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---F 55 Query: 69 LKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ K I I+K ++ T K ++ + LK ++V S N A A++ + Sbjct: 56 LENNKNP-NCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAA 114 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH 186 + ++F+ MN + LG+ +T F ++ G+ + + + + + + K+D + + Sbjct: 115 GISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSN 174 Query: 187 YFQIKGLEIKGKKY----PNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 + I+ K+ NTN V A KTG+ SG+N+V Sbjct: 175 ---LNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|261822173|ref|YP_003260279.1| D-alanyl-D-alanine endopeptidase [Pectobacterium wasabiae WPP163] gi|261606186|gb|ACX88672.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium wasabiae WPP163] Length = 315 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 30/235 (12%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D H++ + PD AS+TKLMTA VV +++ I+ +K E Sbjct: 48 VVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANLPLDEIISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + S ++ + L L ++ S N A ++A + F++ MN + LG++ T + Sbjct: 105 YSRVRLNSEISRHDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKANALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NT 203 + G + + +TARD+ L K QY Q+ + K + NT Sbjct: 165 VEPTG-LSINNVSTARDLTKLLIASK----QYPLLSQLSTTQEKTATFTHPAYSLPFRNT 219 Query: 204 N-------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N W++ KTGFT +G +V + + + V+L A + T Sbjct: 220 NHLVYKADWSIQL------TKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYT 268 >gi|304312179|ref|YP_003811777.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium HdN1] gi|301797912|emb|CBL46134.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium HdN1] Length = 394 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 24/233 (10%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +TG ++ + AS+TKLMTA VV + +LT IT + + S Sbjct: 143 VMDADTGEILYGKNSNETVPIASITKLMTAIVVLDAGQSMHEILT--IT-NDDVDTLRHS 199 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 +S + G+ + + L ++ S N A A+ + + ++ MN + LG++++HF Sbjct: 200 SSRLRVGTRLPRGEMMHLALMSSENRAASALIRNYPGGLQAGLRAMNAKAAELGMTSSHF 259 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGK----KYPNTN-- 204 + G + G+ + D+A + T +P+ Y + + G +Y NTN Sbjct: 260 YDGTG-LNGGNRASLFDLAKMVKAANT-YPEIHDYSTSSSAMVSVAGYRNQLRYVNTNPL 317 Query: 205 -----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W +G KTG+ +G +V A G + + V++ + TR Sbjct: 318 VNNSGWDIGV------TKTGYIREAGKCLVMQARIGATNTVLVLMDSWGAQTR 364 >gi|299782758|gb|ADJ40756.1| Serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum CECT 5716] Length = 389 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 24/237 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D TG V+ + AS++KJ+T V+ +K K T + ++K ++ Sbjct: 64 IDATTGQVLYXKNANTKLAIASISKJITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSENT 123 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T G + T+ + ++KSA+ A+ ++ + + FV+ M K G++ Sbjct: 124 EYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKAGVTD 183 Query: 150 THFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ Q G Y TA D+A ++ + ++P ++ ++ I Sbjct: 184 AKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITKLTSTTI 243 Query: 196 KGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N + T + DG+KTG + +G V++ +I V+L A Sbjct: 244 DGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVLHA 300 >gi|145634640|ref|ZP_01790349.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA] gi|229844548|ref|ZP_04464688.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1] gi|145268185|gb|EDK08180.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA] gi|229812797|gb|EEP48486.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1] Length = 292 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 8/203 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V+ + D AS+TKLMTA V FL+ K I I+K ++ Sbjct: 21 YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---FLENNKNP-NCRIAITKEDTDRI 76 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 T K ++ + LK ++V S N A A++ + + ++F++ MN + LG+ + Sbjct: 77 KGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFIKKMNEKAHQLGMYS 136 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMHYFQIKGLEIKGKKY-PNTNWAV 207 T F ++ G+ + + + + + + K+D + + K K Y NTN V Sbjct: 137 TRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSNLSATYIQAGKHKLYIKNTNKLV 196 Query: 208 -GTFLGADGMKTGFTCASGFNIV 229 A KTG+ SG+N+V Sbjct: 197 RDEIFDAAVNKTGYIQESGYNLV 219 >gi|29827852|ref|NP_822486.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] gi|29604953|dbj|BAC69021.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] Length = 388 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 22/228 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D TG V+A + P PAS K + A + L T+++ E Sbjct: 77 WLVADAGTGDVLASHDAHRPLPPASTLKTLFALTMLPTLPGGIRH-----TVAERELEGL 131 Query: 91 PSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+ +G T + + + + + S ND AV + S+ M ++ LG Sbjct: 132 GDGSSTVGVTEGQTYQVTDLWRGIFLHSGND-AVHVLASMNGGWDTTAHQMQAKARALGA 190 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRI---KTDFPQYMHYFQIKGLEIKGKKYP--N 202 TH ++ G G ++A D+AI R + DF +Y G Y N Sbjct: 191 LDTHVVSPDGYDAPGQTSSAYDLAIFG-RAGLNREDFARYCSTVDAT-FPGNGGAYEIQN 248 Query: 203 TNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 TN + + G G+K G+T +G +VA+A +G ++L+ +L Sbjct: 249 TNRLLTGADGIAPYPGLIGVKNGYTSNAGNTLVAAARRGGRTLVVTVL 296 >gi|22090613|dbj|BAC06851.1| D-Ala-D-Ala carboxypeptidase homologue [Bacillus circulans] Length = 272 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 27/149 (18%) Query: 145 LGLS-ATHFMNAHGV------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 LG+S F+NA G+ +Q +A+D+AIL+ + T+ + + Y ++ Sbjct: 2 LGMSDKAQFINATGLSRADIKENAPKSIQGETVMSAKDVAILARHLVTEHKEVLEYTKVP 61 Query: 192 GLEIK-GKKYP--NTNWAVG-----------TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +++ K P N NW + + G DG+KTG T + + +A + Sbjct: 62 SKKLRESDKTPMINYNWMLEGNSSNVNFKKYAYQGLDGLKTGHTDEALYCFTGTAERNGM 121 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266 LI+V++GA R + +L GF N Sbjct: 122 RLISVVMGAKTEPERFNQTRKVLDYGFTN 150 >gi|120556509|ref|YP_960860.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter aquaeolei VT8] gi|120326358|gb|ABM20673.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Marinobacter aquaeolei VT8] Length = 308 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 23/242 (9%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 S+A + P + V E + D P AS+TKLMTA VV ++ Sbjct: 20 SLASPERAPNLASVQAAAAEVGKEGLLFGKHADRPVPVASITKLMTALVVVESGQDMDEW 79 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 LT ++ + S + GS + + L++ ++ S N A +A FV Sbjct: 80 LTFE---ERHVEAAANAWSRIRVGSQLRRRDVLRIALMSSENFAAYTLARVYPGGFDGFV 136 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQI 190 MN +K LG+ T F++ G+ + +TA D+ IL+ R P+ Y++ Sbjct: 137 AAMNAKAKALGMLQTRFVDPTGLSTD-NVSTAADLVILA-RAALKHPEIREASTTGYYRA 194 Query: 191 KGLEIKGKKYP----NTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 E + +Y NTN V G KTG+ +G +V + +I V+L Sbjct: 195 ---EFRKPRYSLSFGNTNALVHRDSWGVSLSKTGYLTEAGRCLVMVSEMNGTPVITVLLD 251 Query: 246 AL 247 +L Sbjct: 252 SL 253 >gi|307130596|ref|YP_003882612.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] gi|306528125|gb|ADM98055.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] Length = 317 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D V+ PD AS+TKLMTA VV + ++ I+ +K E Sbjct: 48 VVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQPLDERISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A + F+ MN ++ LG++ T + Sbjct: 105 YSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKARALGMTHTRY 164 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L + QY Q+ + K + ++++ F Sbjct: 165 VEPTG-LSTSNVSTARDLTKLLIASR----QYPLLSQLSTTQEKNAVFTQPSYSL-PFRN 218 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + + + V+L A + T Sbjct: 219 TNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFT 268 >gi|213418400|ref|ZP_03351466.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 109 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 26/35 (74%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 Y L+D N+G V+AE D +PASLTK+MT+YV+ Sbjct: 73 YILIDYNSGKVLAEQNADERRDPASLTKMMTSYVI 107 >gi|222874969|gb|EEF12100.1| predicted protein [Populus trichocarpa] Length = 326 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + L D +G +A D PASLTKLMTAY+ F LKEK+ L +T Sbjct: 254 WMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVT 304 >gi|167590610|ref|ZP_02382998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia ubonensis Bu] Length = 356 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 29/243 (11%) Query: 33 LLDTNTG-HVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 +LD +TG ++A N P AS++KLMTA V + ML + ++ ++ Sbjct: 121 VLDVSTGTPLLARNA--RTVRPIASISKLMTAVVARDADRPLDGMLRV-SSHDRDTIKF- 176 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++S GST++ + ++ ++ S N A A++ FV MN ++ LG+ T Sbjct: 177 -THSRLSVGSTLSRRDMYRIALMSSENRAAAALSRDYPGGRPAFVAAMNREARRLGMRRT 235 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F G+ + +TA ++A+L D P + K G +P + + Sbjct: 236 RFREPTGLSPR-NVSTAEELALLVDAAARD-PLIRRFSTAK----SGTVHPGDGKLL--Y 287 Query: 211 LGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + +D + KTGF +G +V A+ + V+LG+ TR+ V++ Sbjct: 288 VNSDPLVRYGQWPIQLQKTGFINEAGHGVVMRALVRGRPQTIVLLGS---PTRDGVTSDA 344 Query: 260 LSM 262 L + Sbjct: 345 LRI 347 >gi|331699048|ref|YP_004335287.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia dioxanivorans CB1190] gi|326953737|gb|AEA27434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia dioxanivorans CB1190] Length = 411 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 14/255 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L D ++G V+A P PAS KL+T VV L + ++ + + S Sbjct: 86 WVLADLDSGVVLAARDPHGRQRPASTLKLLTTLVVLDRLPLDQTVVGDTSDVQVDGSR-- 143 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + G + T+ L L++ S ND A A+A +L + M + +G T Sbjct: 144 ---AGIGPGGSYTVQQLLTGLLLNSGNDTAHALARTLGGVPRTL-DLMQQRAAAMGALDT 199 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP-----NTN 204 G+ G T+A D+A+ R P + Q++ + G P N + Sbjct: 200 RPATPSGLDGPGMSTSAYDLALF-LRAALRNPTFAELTQLRLVAFPGFGDRPGFMLSNDD 258 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS-LLSMG 263 + ++ GA G KTGFT A+ V +A + L+ ++ R AS LL G Sbjct: 259 PLLSSYDGALGGKTGFTDAARHTFVGAAQRDGHRLVVALVRGEQHPVRMVAQASALLDYG 318 Query: 264 FYNKTDRKKINYIIK 278 F + +++ Sbjct: 319 FALPAGTPGVGTLVE 333 >gi|116617478|ref|YP_817849.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096325|gb|ABJ61476.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 444 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D TG ++ + AS +K++TAY V +K K +T + I+ A Sbjct: 62 VVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKADLSKED 121 Query: 93 NSTF-----KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + F K G +++ ++ SAND A A+ E + + Q + + +K L L Sbjct: 122 SHLFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQALESWAKELHL 181 Query: 148 SATHFMNAHGVV 159 S + + N+ G V Sbjct: 182 SGSQWYNSAGQV 193 >gi|289673758|ref|ZP_06494648.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + PD AS+TKLMTA VV L K+ M I N S+ P Sbjct: 30 VIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVV---LDAKQPMDE---VIPVNISQTPEM 83 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 F + GS M + L + ++ S N A ++A S F+ MN +K LG+ Sbjct: 84 KGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKH 143 Query: 150 THFMNAHG 157 T ++ G Sbjct: 144 TAYVEPTG 151 >gi|326442723|ref|ZP_08217457.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 824 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 21/201 (10%) Query: 46 YPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP-----ITIS-KNASEYPPSNST--- 95 Y D P AS+TK MTAYV+ L+EK LT ITI + EY ++ Sbjct: 488 YGDQKPRPIASVTKAMTAYVI---LREKP--LTGKGQGDRITIDQRTEDEYHSGKNSESV 542 Query: 96 --FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K G T L+LL++ SAN++A +A +E FV+ M + +LG+ T + Sbjct: 543 VEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYT 602 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + G ++ +T D L+ D F + ++ ++K I+ Y + + A+ Sbjct: 603 DPSG-LRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTIYNSADKAL-LLD 660 Query: 212 GADGMKTGFTCASGFNIVASA 232 G G+KTG + +G N++ SA Sbjct: 661 GVGGIKTGSSTPAGGNLLWSA 681 >gi|254362625|ref|ZP_04978714.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] gi|261492868|ref|ZP_05989414.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496782|ref|ZP_05993157.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094239|gb|EDN75110.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] gi|261307621|gb|EEY08949.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311409|gb|EEY12566.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 291 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 26/196 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--------D 105 AS+TKLMTA V FL+E + + I PS++ F KG+T L Sbjct: 68 ASVTKLMTAVV---FLEENRYGASCQTQIL-------PSDADFLKGTTSPLPKNLNIACS 117 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 LK ++V+S N A A+A + + +F+ MN+ ++ +G++ T+F ++ G + + + Sbjct: 118 ELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMTQTYFGDSSG-LSSDNVS 176 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKY---PNTNWAVGT-FLGADGMKTGF 220 T D+A L+ + P+ + + G +Y NTN V + A KTG+ Sbjct: 177 TVVDLAKLAGYAASK-PEIQQLSNSPLVSVYAGGRYFSMKNTNSMVRSQSYQALVSKTGY 235 Query: 221 TCASGFNIVASAIQGD 236 T +G+N+ A +GD Sbjct: 236 TREAGYNLAFIA-KGD 250 >gi|317406568|gb|EFV86761.1| hypothetical protein HMPREF0005_04939 [Achromobacter xylosoxidans C54] Length = 277 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 28/199 (14%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---------LKEKKA 74 E + + +LD+ +G + + ASLTKL+TA VV + E+ A Sbjct: 49 EASGASHVLVLDSRSGATLFGRAENDAVPIASLTKLVTAMVVLDTSPDLSRRIRIDERDA 108 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + T S AS P G+++TLD LKL ++ S N A A+A + E F Sbjct: 109 LATA----SGAASPLP-------VGASVTLDTLLKLALMASDNRAAHALARAYPGGETAF 157 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR-----DMAILSWRIKTDFPQYMHYFQ 189 + + + L L T +A G+ + A D A +I D + Sbjct: 158 AEALQRKAAALRLEHTTLQDATGLSNANRASAADIGRIIDAAAAYPQIARDTTTLADTVE 217 Query: 190 IKGLEIKGKKYPNTNWAVG 208 G + Y NTN VG Sbjct: 218 AAGSRL---SYRNTNPLVG 233 >gi|89899952|ref|YP_522423.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Rhodoferax ferrireducens T118] gi|89344689|gb|ABD68892.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Rhodoferax ferrireducens T118] Length = 282 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 18/209 (8%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNA 86 + +++ +G ++ E ASLTKLMTA VV ++EK ++ + + K++ Sbjct: 26 HAIVVNNESGEILFEENASSVVPIASLTKLMTAMVVLDSKPDMEEKISIQLADVDMFKHS 85 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + + P G+T+ L+L ++ S N A ++A + FV+ ++ K+LG Sbjct: 86 ASHVP------LGTTLPRREVLQLALMSSDNRAAASLARTYPGGNPAFVKAVHEKIKSLG 139 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--LEIKGK--KYPN 202 + T G+ + +TA D+A +++ + +P ++ + + ++G+ ++ N Sbjct: 140 MINTVIKEPTGLSPE-NASTAADLAKMAF-AASRYPVIVNITTDRSDLINMQGRSVEFHN 197 Query: 203 TNWAVGTFLGADGM--KTGFTCASGFNIV 229 TN VG G D + KTGFT +G ++ Sbjct: 198 TNRLVGK-RGWDILLSKTGFTNEAGHCLI 225 >gi|227432674|ref|ZP_03914647.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351556|gb|EEJ41809.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 444 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITISKNASEYP 90 ++D TG ++ + AS +K++TAY V +K K +T PIT + S+ Sbjct: 62 VVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKSDLSKED 121 Query: 91 P---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+ K G +++ ++ SAND A A+ E + + Q + + +K L L Sbjct: 122 SHMFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQTLESWAKELHL 181 Query: 148 SATHFMNAHGVV 159 S + + N+ G V Sbjct: 182 SGSQWYNSAGQV 193 >gi|294670433|ref|ZP_06735315.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307897|gb|EFE49140.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 313 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 13/227 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 +++ TG V+ + + AS++KLM+A VV + + + ITI+++ Sbjct: 77 IVNNRTGEVLYQKNMNRVMPIASISKLMSAMVVL----DARLNMNEVITITEDEIDRLKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG++ + Sbjct: 133 TGSRLSVGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMTNSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYPNTNWAV 207 F G + + + +TA D+ L+ P Y + + + Y NTN V Sbjct: 193 FYEPTG-LDYRNVSTAWDLNKLAAAASNYAPITKNSTATYGSVYTSAGRQQNYKNTNALV 251 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 GT+ + KTG+ SG ++V A G + + V+L + TR Sbjct: 252 REGTW-DIELQKTGYIRESGRSMVVRARIGREPVTIVLLNSPTSTTR 297 >gi|121604627|ref|YP_981956.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Polaromonas naphthalenivorans CJ2] gi|120593596|gb|ABM37035.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Polaromonas naphthalenivorans CJ2] Length = 363 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 24/232 (10%) Query: 33 LLDTNTGHVI-AENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 ++D +T V+ ++N DH P ASLTKLMT ++ M+T + Sbjct: 111 VIDQDTREVLFSKN--DHAVLPIASLTKLMTGVIISGARLPMDEMIT---VTQDDVDTEK 165 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S S G+T++ L L ++ S N A A+ + FV MN +K LG+ T Sbjct: 166 HSRSRLSVGATLSRGEMLHLALMSSENRAAHALGRTYPGGMATFVSLMNAKAKMLGMHDT 225 Query: 151 HFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFPQYMHYFQIKGLEIK--GKKY 200 + G+ + ++A+D+A L R T P Y + L+ + Sbjct: 226 SYAEPTGLSSR-NQSSAQDLAALVNAAHGDPVLRELTTSPGYQVAVGSRTLQFNNTNRLV 284 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N +W +G KTG+ +G +V + LI V L + + +R Sbjct: 285 KNPDWDIGL------QKTGYINEAGQCLVMQTKIAGRKLIMVFLDSAGKLSR 330 >gi|256371452|ref|YP_003109276.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium ferrooxidans DSM 10331] gi|256008036|gb|ACU53603.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium ferrooxidans DSM 10331] Length = 416 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%) Query: 47 PDHPWNPASLTKLMTAYVV-----FSFLKEKKAMLTTP----ITISKNASEYPPSNSTFK 97 P P AS+ K+MTA + S ++ ++ TP I ++ A S Sbjct: 92 PTTPQTIASVAKMMTALLTIRDHPLSLGQQGPSITITPEDYQIYLTDKAQND--SVMAVA 149 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G ++ AL+ L++ SA+++A +A +E FV MN+ +K LGL+ TH+ + G Sbjct: 150 PGEQLSEYQALEALLIPSADNMATVLATWDAGSESAFVAQMNHEAKVLGLTDTHYGDPSG 209 Query: 158 V 158 + Sbjct: 210 L 210 >gi|148827504|ref|YP_001292257.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG] gi|148718746|gb|ABQ99873.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG] Length = 292 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 14/206 (6%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D V+ + D AS+TKLMTA V FL+ K I I+K ++ Sbjct: 21 YVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---FLENNKNP-NCRIAITKEDTDRI 76 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 T K ++ + LK ++V S N A A++ + + ++F++ MN + LG+ + Sbjct: 77 KGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFIKKMNEKAHQLGMYS 136 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMH----YFQIKGLEIKGKKYPNTN 204 T F ++ G+ + + + + + + K+D + + Y Q ++ K NTN Sbjct: 137 TRFHDSSGLSSYNISSPMDLVKLAKYSLNKSDIKRLSNLSATYIQAGEHKLYIK---NTN 193 Query: 205 WAV-GTFLGADGMKTGFTCASGFNIV 229 V A KTG+ SG+N+V Sbjct: 194 KLVRDEIFDAAVNKTGYIQESGYNLV 219 >gi|78062125|ref|YP_372033.1| murein-DD-endopeptidase [Burkholderia sp. 383] gi|77970010|gb|ABB11389.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 [Burkholderia sp. 383] Length = 364 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 12/202 (5%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L ++ ++ + S + GS ++ + ++ Sbjct: 150 ASISKLMTAVVARDADRPLNGVLRV-TAHDRDTIKF--TGSRLQVGSELSRREMFHIALM 206 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 207 SSENRAAAALSRDYPGGRAAFVNAMNREARRLGMRHTHFREPTGLSPH-NVSTAEDLAKL 265 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 D P ++ ++ Y N++ V L KTGF SG + Sbjct: 266 VGAAAQD-PLIRYFSTDTSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHGV 324 Query: 229 VAS-AIQGDQSLIAVILGALDR 249 V ++G + + V+LGA R Sbjct: 325 VMRMRVKGRRETV-VLLGAPTR 345 >gi|329119331|ref|ZP_08248017.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC BAA-1200] gi|327464476|gb|EGF10775.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC BAA-1200] Length = 314 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 15/228 (6%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 +L+ TG V+ + + AS++KLM+A V + + + ITI+++ Sbjct: 77 ILNNRTGEVLYQKNMNRVMPIASISKLMSAMVTL----DARLNMNEVITITEDEIDRIKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+ +T L L ++ S N A+ + FV MN +++LG++ + Sbjct: 133 TGSRLSIGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMAAFVAAMNAKAQSLGMADSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWA 206 F G + + + +TA D++ + +PQ Y + + + Y N+N Sbjct: 193 FYEPTG-LDYRNVSTASDLSKM-VAAAAKYPQIRSNSTSTYGSVYTSAGRQQNYKNSNAL 250 Query: 207 V--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V GT+ + KTG+ SG ++V A G + + V+L + TR Sbjct: 251 VREGTW-DIELQKTGYIRESGRSMVVKARIGSEPVTIVLLNSPTTTTR 297 >gi|290962655|ref|YP_003493837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] gi|260652181|emb|CBG75313.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] Length = 399 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 25/229 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A + PAS K + A V L A L + + A Sbjct: 82 WLVADAGSGEVLAAHDAHRRLPPASTLKTLFALTVLPGLP---AGLRHTVKSEELAGIGA 138 Query: 91 PSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ K+ +T T+ + + + + S ND AV + SL K + M ++ LG Sbjct: 139 GSSLVGVKENNTYTVADLWRGVFLSSGND-AVRVLASLNGGWKATTEQMQAKARALGARD 197 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG- 208 TH ++ G G ++A D+A+ R ++ Y +P W+ G Sbjct: 198 THVVSPDGYDAPGQVSSAYDLAVFG-RAGLRNAEFAGY-----CATATATFPAGGWSYGI 251 Query: 209 -------------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G G+K G+T +G +VA+A +G ++L+ ++ Sbjct: 252 QNTNRLLTGAGVEPYPGLIGVKNGYTTNAGNTLVAAAKRGGRTLVVTVM 300 >gi|317508066|ref|ZP_07965751.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] gi|316253634|gb|EFV13019.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC BAA-974] Length = 399 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 19/246 (7%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM-LTTPITISKNASEY 89 + + D ++G V+A + P + PAS K + A V L + LT + S++ Sbjct: 93 WLVADLDSGQVLAASDPHGRFRPASTIKTLLALAVLDELDPNHVVQLTDGDQTADEESQH 152 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGL 147 P + G T+ L+ ++ S+N A A+A L + V+ MN+ + LG Sbjct: 153 P----FIEPGGKYTVFELLEGALMVSSNGAANALARVLGAGGGVEAAVKKMNDLAGLLGA 208 Query: 148 SATHFMNAHGVVQHGHYTTAR--DMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKK--YP- 201 T GV G +T+ D+A I +K D + K + + G +P Sbjct: 209 KDTRATTPSGVEAPGGPSTSSPYDLALIFRAAMKQDI--FRKIVSQKSITMHGDPDDFPL 266 Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--RNKVSAS 258 N N + + G G KTGFT S VA+A + + L+ + L+ T R + SA Sbjct: 267 VNDNAMLDDYPGMLGGKTGFTEDSQKTFVAAAERDGRRLVVTQMYGLNGATTFREQASA- 325 Query: 259 LLSMGF 264 LL GF Sbjct: 326 LLDWGF 331 >gi|152999492|ref|YP_001365173.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS185] gi|160874112|ref|YP_001553428.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS195] gi|217972168|ref|YP_002356919.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS223] gi|304410998|ref|ZP_07392614.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS183] gi|307301879|ref|ZP_07581637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica BA175] gi|151364110|gb|ABS07110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS185] gi|160859634|gb|ABX48168.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS195] gi|217497303|gb|ACK45496.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS223] gi|304350533|gb|EFM14935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS183] gi|306913917|gb|EFN44338.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica BA175] gi|315266344|gb|ADT93197.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella baltica OS678] Length = 321 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + P+ AS+TKLMTA V L K AM + E Sbjct: 59 VVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVT---LDAKLAMDEKLAVNINDTKEMRGV 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T + Sbjct: 116 YSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNTRY 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + + ++A D+ +L + +P Q+ E K + +++ F Sbjct: 176 VEPTG-LSYKNVSSASDLIVL-LKASEGYPM---LGQLSSTEKKTVTFAKPRYSLD-FRN 229 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + + V+L A + T Sbjct: 230 TNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYT 279 >gi|126175583|ref|YP_001051732.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS155] gi|125998788|gb|ABN62863.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 [Shewanella baltica OS155] Length = 321 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D T V+ + P+ AS+TKLMTA V L K AM + E Sbjct: 59 VVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVT---LDAKLAMDEKLAVNINDTKEMRGV 115 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A K F++ MN +K LG+ T + Sbjct: 116 YSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNTRY 175 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + + ++A D+ +L + +P Q+ E K + +++ F Sbjct: 176 VEPTG-LSYKNVSSASDLIVL-LKASEGYPM---LGQLSSTEKKTVTFAKPRYSLD-FRN 229 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + + V+L A + T Sbjct: 230 TNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYT 279 >gi|294814332|ref|ZP_06772975.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|294326931|gb|EFG08574.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 859 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 21/201 (10%) Query: 46 YPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP-----ITIS-KNASEYPPSNST--- 95 Y D P AS+TK MTAYV+ L+EK LT ITI + EY ++ Sbjct: 523 YGDQKPRPIASVTKAMTAYVI---LREKP--LTGKGQGDRITIDQRTEDEYHSGKNSESV 577 Query: 96 --FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K G T L+LL++ SAN++A +A +E FV+ M + +LG+ T + Sbjct: 578 VEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYT 637 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + G ++ +T D L+ D F + ++ ++K I+ Y + + A+ Sbjct: 638 DPSG-LRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTIYNSADKAL-LLD 695 Query: 212 GADGMKTGFTCASGFNIVASA 232 G G+KTG + +G N++ SA Sbjct: 696 GVGGIKTGSSTPAGGNLLWSA 716 >gi|33150032|gb|AAP97032.1| putative D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri DSM 20016] Length = 162 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 + D +TG +I + D AS+TKL+T V+ +++K+ T + I+ +++ Sbjct: 35 MADASTGQIIYKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAAISND 94 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ K G + ++ + +VKSA+ VA+A + +F M +K +G++ Sbjct: 95 AAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKIGMT 154 Query: 149 ATHFMNA 155 T+ +N+ Sbjct: 155 KTNIVNS 161 >gi|254388319|ref|ZP_05003554.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] gi|197702041|gb|EDY47853.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC 27064] Length = 883 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 21/201 (10%) Query: 46 YPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP-----ITIS-KNASEYPPSNST--- 95 Y D P AS+TK MTAYV+ L+EK LT ITI + EY ++ Sbjct: 547 YGDQKPRPIASVTKAMTAYVI---LREKP--LTGKGQGDRITIDQRTEDEYHSGKNSESV 601 Query: 96 --FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 K G T L+LL++ SAN++A +A +E FV+ M + +LG+ T + Sbjct: 602 VEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYT 661 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + G ++ +T D L+ D F + ++ ++K I+ Y + + A+ Sbjct: 662 DPSG-LRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTIYNSADKAL-LLD 719 Query: 212 GADGMKTGFTCASGFNIVASA 232 G G+KTG + +G N++ SA Sbjct: 720 GVGGIKTGSSTPAGGNLLWSA 740 >gi|269213993|ref|ZP_05983348.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria cinerea ATCC 14685] gi|269144751|gb|EEZ71169.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria cinerea ATCC 14685] Length = 316 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 22/231 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 +++ TG ++ + D AS++KLM+A VV + + ITI+ + Sbjct: 81 VVNNKTGQILYQKNADRIMPIASISKLMSAMVVL----DANLNMDETITITTDEIDRIKG 136 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+++T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 137 TGSRLAIGTSLTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSR 196 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAV 207 F G + + + +TA+D++++ +PQ ++ K Y N+N V Sbjct: 197 FYEPTG-LNYQNVSTAKDLSLM-VNAAVQYPQIRINSTSNHAAVQTKNGQQNYKNSNALV 254 Query: 208 GTFLGADGM------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 +GM KTG+ +G ++V A +Q + ++L + TR Sbjct: 255 -----REGMWNIELQKTGYIREAGRSMVVRANIQNQPVTIILLNSPTSATR 300 >gi|184154585|ref|YP_001842925.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956] gi|183225929|dbj|BAG26445.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956] Length = 411 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 24/237 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D TG ++ + AS++K++T V+ +K K T + ++K ++ Sbjct: 44 IDATTGQILYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSENT 103 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T G + T+ + ++KSA+ A+ ++ + + FV+ M K G++ Sbjct: 104 EYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKAGVTD 163 Query: 150 THFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ Q G Y TA D+A ++ + ++P ++ ++ I Sbjct: 164 AKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITKLTSTTI 223 Query: 196 KGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 G N + T + DG+KTG + +G V++ +I V+L A Sbjct: 224 DGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVLHA 280 >gi|288576057|ref|ZP_05978110.2| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996] gi|288566309|gb|EFC87869.1| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996] Length = 313 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 + + TG ++ + D AS++KLM+A +V + + + PITI+ + Sbjct: 78 IFNNKTGEILYQKNADRVMPIASISKLMSAMIVL----DARLDMNEPITITADEIDRLKG 133 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 134 TGSRLAIGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMYSSR 193 Query: 152 FMNAHGVVQHGHYTTARDM 170 F G + + +TA D+ Sbjct: 194 FYEPTG-LNFQNVSTANDL 211 >gi|114321496|ref|YP_743179.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Alkalilimnicola ehrlichii MLHE-1] gi|114227890|gb|ABI57689.1| murein-DD-endopeptidase [Alkalilimnicola ehrlichii MLHE-1] Length = 327 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVF---SFLKEKKAMLTTPITISKNASEYPPSN 93 +TG + D P ASLTKLMTA VV + L E ++ ++KNA + Sbjct: 72 DTGERLVGKRADMPAPIASLTKLMTALVVVESGAPLDEWLTIVPRQHAVTKNAYSRMRVD 131 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 S +G ++L ++ S N +A F+ MN +K LG++ T F+ Sbjct: 132 SRLPRGEL------VRLALMSSENLATYVLAHHHPGGRAAFIAAMNAKAKELGMTQTRFV 185 Query: 154 NAHGV 158 ++ G+ Sbjct: 186 DSSGL 190 >gi|256390347|ref|YP_003111911.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora acidiphila DSM 44928] gi|256356573|gb|ACU70070.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora acidiphila DSM 44928] Length = 348 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 20/205 (9%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALK 109 AS+ K+MTAYVV I + + A++ S++ G ++ L+ Sbjct: 123 ASVAKVMTAYVVLRDHPLSDGQAGPDIVVDQQAADESSLRDESSAPVHAGQHLSERTLLE 182 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++V SAN++A + T+ FV MN + +LG+ T + + G + +TA D Sbjct: 183 LMLVPSANNVARLLGRWDAGTQDAFVAEMNAAAVSLGMKNTTYTDPSG-LDSSTRSTAVD 241 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGM---KTGFTCA 223 L+ TD P + ++ NT+ LG+DG+ KTG + Sbjct: 242 QMQLAKVALTD-PVLLALTAEPATQVPDDPASLLTNTD----ALLGSDGVVGGKTGSSTP 296 Query: 224 SGFNIVASA---IQGDQSLI-AVIL 244 +G ++ +A + G+ L+ V+L Sbjct: 297 AGGALMWAAHRTLDGEDHLVLGVVL 321 >gi|227514221|ref|ZP_03944270.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum ATCC 14931] gi|227087417|gb|EEI22729.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum ATCC 14931] Length = 431 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 26/238 (10%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D TG V+ + AS++K++T V+ +K K T + ++K ++ Sbjct: 64 IDATTGQVLYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSENT 123 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 SN T G + T+ + ++KSA+ A+ ++ + + FV+ M K G++ Sbjct: 124 EYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKAGVTD 183 Query: 150 THFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 N G+ Q G Y TA D+A ++ + ++P ++ ++ I Sbjct: 184 AKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITKLTSTTI 243 Query: 196 K-------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K P + A + + DG+KTG + +G V++ +I V+L A Sbjct: 244 DGTTVTTINKMLPGQSDAP-SQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVLHA 300 >gi|284992776|ref|YP_003411330.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geodermatophilus obscurus DSM 43160] gi|284066021|gb|ADB76959.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geodermatophilus obscurus DSM 43160] Length = 439 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 16/257 (6%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P + + D +G V+A P + PAS K +T + L + + T + A E Sbjct: 89 PGWLVADAGSGAVLAARDPHGRYYPASTLKTLTLLTLLPVLDPAEVVEGT---VEDEAVE 145 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S G + + L+++S ND A A+A + T+ V+ MN + ++G Sbjct: 146 G--SRVGMVAGGRYPVPLLYQALVMQSGNDAANALARAAGGTDVT-VRAMNEVAGSIGAF 202 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-------GKKYP 201 T G+ G ++ D+A++ R+ D P + Q + E+ G ++ Sbjct: 203 DTVAGTPSGLDVAGQSSSPYDLALVFRRLVED-PDTVALLQTRLAEMPAVEGRHPGFQFH 261 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLL 260 N N GT G G KTGFT A+ V +A + + L+ ++G R +ASLL Sbjct: 262 NQNPLAGTP-GNLGGKTGFTDAARHTFVTAAERDGRRLVVSVMGTESVPLRAADQAASLL 320 Query: 261 SMGFYNKTDRKKINYII 277 GF + + ++ Sbjct: 321 DWGFATPAGTEGVGRLV 337 >gi|116493792|ref|YP_805526.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei ATCC 334] gi|227534583|ref|ZP_03964632.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631047|ref|ZP_04674078.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065368|ref|YP_003787391.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str. Zhang] gi|116103942|gb|ABJ69084.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Lactobacillus casei ATCC 334] gi|227187832|gb|EEI67899.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527330|gb|EEQ66331.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437775|gb|ADK17541.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str. Zhang] Length = 436 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 118/290 (40%), Gaps = 38/290 (13%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIA-----ETNKLPY--YTLLDTNTGHVIAENYPDHPWN 52 MR + ++A+ M+ P +S++ +TN + ++ TG ++ Sbjct: 5 MRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNASSVLP 64 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNAL 108 AS+TK+++ +V +K K +T++ E SN ++ + ++ Sbjct: 65 IASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELY 124 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------ 162 ++ SAN + +AE + +++KFV M + G++ +N G+ Sbjct: 125 DASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKV 184 Query: 163 --------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKK----YPNTNWAVGT 209 + +A+DMA ++ + D P+ + I K KG N NW + Sbjct: 185 PGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244 Query: 210 F------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTR 252 L DG+KTG + A+G + + +I VIL A D TR Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTR 294 >gi|289803285|ref|ZP_06533914.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 133 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A + Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA--WA 98 Query: 91 PSNSTF--------KKGSTMTLDNALKLLIVKSAN 117 N F K+G +++ + + LIV S N Sbjct: 99 KDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133 >gi|88856162|ref|ZP_01130822.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1] gi|88814481|gb|EAR24343.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1] Length = 408 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 114/263 (43%), Gaps = 27/263 (10%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ +LS P L+ E LP Y + LD TG V+A + P AS+TK++T+ Sbjct: 41 VSATVLSAAAPELAEPELT-LPSYGASAISALD-RTG-VLARAGSEEPLPIASITKVITS 97 Query: 63 YVVFSF--LKEKKAMLTTPITISK-NASEYPPSNSTFK------KGSTMTLDNALKLLIV 113 VV L +A T IT + + Y + F G ++ + ++++ Sbjct: 98 LVVLDAKPLAVDEAGPT--ITFGQPDLDYYYTQQAQFGLVWPVFDGQQLSQREVMNVVLL 155 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAN+ A ++A +EK F K GL T A G +Q + +TA D+ L Sbjct: 156 ASANNYAQSLAHWAFGSEKAFTAAAAQWLKEQGLEQTTLTEASG-IQETNQSTAEDLTEL 214 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + R+ + P E+ G N N +G G DG+KTG ++ SA Sbjct: 215 A-RLAIENPVIAEIVATPSTEVPGLGTVSNRNQLLG-IDGVDGIKTGTLEDDWACLLFSA 272 Query: 233 ---IQGD-QSLIAVILGALDRNT 251 I G+ ++ + V+LG D T Sbjct: 273 DVVIGGEKKTFVGVVLGGPDHPT 295 >gi|191637034|ref|YP_001986200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23] gi|190711336|emb|CAQ65342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23] gi|327381061|gb|AEA52537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei LC2W] gi|327384236|gb|AEA55710.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei BD-II] Length = 436 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 118/290 (40%), Gaps = 38/290 (13%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIA-----ETNKLPY--YTLLDTNTGHVIAENYPDHPWN 52 MR + ++A+ M+ P +S++ +TN + ++ TG ++ Sbjct: 5 MRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNASSVLP 64 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNAL 108 AS+TK+++ +V +K K +T++ E SN ++ + ++ Sbjct: 65 IASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELY 124 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------ 162 ++ SAN + +AE + +++KFV M + G++ +N G+ Sbjct: 125 DASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKV 184 Query: 163 --------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKK----YPNTNWAVGT 209 + +A+DMA ++ + D P+ + I K KG N NW + Sbjct: 185 PGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244 Query: 210 F------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTR 252 L DG+KTG + A+G + + +I VIL A D TR Sbjct: 245 LVSYDKDLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTR 294 >gi|261400432|ref|ZP_05986557.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria lactamica ATCC 23970] gi|269209880|gb|EEZ76335.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria lactamica ATCC 23970] Length = 312 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNQTGQILYQKNADRIMPIASISKLMSAMVVLDADLNMDETITITPDEIDR----LKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+++T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTSLTRRELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNQKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F G+ H + +TA+D+ ++ Sbjct: 193 FYEPTGLNFH-NVSTAKDLNLM 213 >gi|313668773|ref|YP_004049057.1| D-alanyl-D-alanine-endopeptidase [Neisseria lactamica ST-640] gi|309378137|emb|CBX23227.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006235|emb|CBN87697.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria lactamica 020-06] Length = 312 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG ++ + D AS++KLM+A VV + L + + TP I + Sbjct: 77 VVNNQTGQILYQKNADRIMPIASISKLMSAMVVLDADLNMDETITITPDEIDR----LKG 132 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+++T L L ++ S N A+ + FV MN +++LG+ + Sbjct: 133 TGSRLAIGTSLTRRELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNQKAQSLGMYGSR 192 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F G+ H + +TA+D+ ++ Sbjct: 193 FYEPTGLNFH-NVSTAKDLNLM 213 >gi|29832456|ref|NP_827090.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] gi|29609575|dbj|BAC73625.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis MA-4680] Length = 446 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 34/268 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS-FLKEKKAMLTTPITISKNASEY 89 + + D +G V+A PAS K++ A V F + ++ +T + Sbjct: 86 WLVADHESGEVLAAYNAHRRLAPASTLKMLFADTVLKKFERAERHTVTADDLVGI----- 140 Query: 90 PPSNSTF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 P+ S+ + G+T T++ + ++S ND AV + + + V M +++L Sbjct: 141 -PAGSSLVGVQAGTTYTVEQLWLGVFLRSGND-AVHVLSHMNGGVAETVAQMQAKAEDLQ 198 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQYM------------HYFQIKG 192 TH ++ G G ++A D+ + + DF Y FQI+ Sbjct: 199 ALDTHVVSPDGFDHKGQLSSAYDLTLFARHGLADADFRDYCATRTADFPAGRKKTFQIQN 258 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + + W + T+ G G+K G+T +G +A +G ++L+ ++ ++ Sbjct: 259 TD----RLLTGAWGMETYDGLIGVKNGYTSHAGNTFTGAATRGGRTLLVTVM--HPKSGG 312 Query: 253 NKV---SASLLSMGFYNKTDRKKINYII 277 N V +A LL GF + K + ++ Sbjct: 313 NGVYEETAKLLDWGFAHAASAKPVGTLV 340 >gi|229550853|ref|ZP_04439578.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus LMS2-1] gi|258538436|ref|YP_003172935.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc 705] gi|229315803|gb|EEN81776.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus LMS2-1] gi|257150112|emb|CAR89084.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc 705] Length = 436 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 100/230 (43%), Gaps = 32/230 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+++ +V +K K +T+ ++ + + SN ++ + ++ Sbjct: 66 ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----------VV 159 ++ SAN + +A+++ +++KFV M+ K+ G++ +N G V Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185 Query: 160 QHG----HYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWAVGT 209 G + +A+DMA ++ + D P+ + I KG + N +W + Sbjct: 186 GTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIAKQTFRKGTD-DAINMENWDWMLKG 244 Query: 210 F------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTR 252 L DG+KTG + A+G + + +I V+L A D TR Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTR 294 >gi|199597923|ref|ZP_03211348.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001] gi|258507249|ref|YP_003170000.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG] gi|199591180|gb|EDY99261.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001] gi|257147176|emb|CAR86149.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG] gi|259648615|dbj|BAI40777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG] Length = 436 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 100/230 (43%), Gaps = 32/230 (13%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+++ +V +K K +T+ ++ + + SN ++ + ++ Sbjct: 66 ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----------VV 159 ++ SAN + +A+++ +++KFV M+ K+ G++ +N G V Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185 Query: 160 QHG----HYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWAVGT 209 G + +A+DMA ++ + D P+ + I KG + N +W + Sbjct: 186 GTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIARQTFRKGTD-DAINMENWDWMLKG 244 Query: 210 F------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-LDRNTR 252 L DG+KTG + A+G + + +I V+L A D TR Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTR 294 >gi|302532678|ref|ZP_07285020.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces sp. C] gi|302441573|gb|EFL13389.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces sp. C] Length = 422 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 22/207 (10%) Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMT----- 103 P AS+ K+MTAYV+ +K I +K +E S+ + +G T Sbjct: 87 PMPTASVAKIMTAYVILKGHPLRKNEPGPKIEADAKAVAEGNASSESRIEGLTAGQKFSQ 146 Query: 104 LDNALKLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 LD +K+L++ SAN+IA +A E FV MN +K LG++ T + + G + G Sbjct: 147 LD-MIKMLMIPSANNIARLLARWDTGGDEAAFVAKMNAAAKELGMTNTTYTDPSG-LDAG 204 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGA----DGM 216 +TA D L+ + D + + I+G P N N G+ L A +G+ Sbjct: 205 TVSTAVDQLKLAEAVMKDD-AFRTVVAMPSAPIEGLSKPLINNN---GSLLLAGLNINGI 260 Query: 217 KTGFTCASGFNIVASA---IQGDQSLI 240 KTG + +G + +A + G+ LI Sbjct: 261 KTGSSTPAGGTLSWAAYKTVGGETPLI 287 >gi|65319856|ref|ZP_00392815.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 120 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + LL GF Sbjct: 13 GVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGF 65 >gi|229015415|ref|ZP_04172419.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] gi|228745873|gb|EEL95871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] Length = 244 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 166 TARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGK----KYPNTNWA----VGTFLGADGM 216 +ARD+AIL+ R+ DFP+ + +I K + +G + PN NW + + G DG+ Sbjct: 2 SARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGL 61 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 KTG T +G + + I+V++ R + L GF N Sbjct: 62 KTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFAN 111 >gi|254254175|ref|ZP_04947492.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158] gi|124898820|gb|EAY70663.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158] Length = 341 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 15/215 (6%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA V + +L +++ + S G+ ++ + ++ Sbjct: 127 ASISKLMTAVVARRADRPLNGVLRV---TARDRDTIKFTGSRLPIGAELSRRQMFHIALM 183 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A++ FV MN ++ LG+ THF G+ H + +TA D+A L Sbjct: 184 SSENRAAAALSRDYPGGRAAFVGAMNREARRLGMRRTHFREPTGLSPH-NVSTADDLARL 242 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 D P ++ ++ Y N++ V L KTGF SG + Sbjct: 243 VGAAAKD-PLIRYFSTDTSTTVRAGDDELLYVNSDPLVRYGRLPIRLQKTGFINESGHGV 301 Query: 229 VAS-AIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 V + G + I V+LGA TR VS+ L + Sbjct: 302 VMRMRVNGRRETI-VLLGA---PTRAGVSSDALKI 332 >gi|33595888|ref|NP_883531.1| D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis 12822] gi|33565967|emb|CAE36518.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis] Length = 259 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 25/210 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV M+ IT + + S + G+ ++ + L L ++ Sbjct: 43 ASISKLMTALVVVDANLPMDEMIE--IT-DDDVDTLKHTTSRLRVGTVLSRGDMLHLALM 99 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ + FV MN +++LG+ THF+ G+ + ++ RD+A + Sbjct: 100 SSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTHFVEPTGLSSE-NVSSPRDLARM 158 Query: 174 SWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTC 222 R + P Y E+ + + + NTN W + KTGF Sbjct: 159 -LRAASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVS------KTGFIN 211 Query: 223 ASGFNIVASAIQGDQSLIAVIL---GALDR 249 +G +V A + + V+L G L R Sbjct: 212 EAGECLVMLARINGRDMAIVLLDSQGKLSR 241 >gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118170982|gb|ABK71878.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length = 296 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 25/263 (9%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN--YPDHPWNPASLTKLMTAYVVFSFLK 70 + ++ P AET + + D +TG ++A Y H PAS K + A VV + Sbjct: 37 VGSVAPPEGPAET-----WVVADMDTGQILAGRGEYVRH--APASTIKTLLALVVLDEVP 89 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L + I + ++ + + G T T L+ ++ S ND A +A L Sbjct: 90 -----LDSTIVADETDTDVECNCAGVAPGRTYTARQLLEAALLASGNDAANTLARMLGGP 144 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYF 188 E V MN + LG T+ + G+ G ++T D+A++ +R P + Sbjct: 145 EAA-VAKMNAKAAQLGARDTNVVTPSGLDAPGMPFWSTPHDLAVI-FRAAMADPVFAQIT 202 Query: 189 QIKGLEIKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVI 243 + K N N + + G G KTGFT + VA+A + G + +IA++ Sbjct: 203 AMPSTVFPAKTGDRVLVNQNELLHRYPGTLGGKTGFTDIARKTFVAAAQRDGRRLVIAMM 262 Query: 244 LGALDRN--TRNKVSASLLSMGF 264 G + T +A LL GF Sbjct: 263 YGLVKEGGPTYWDQAAGLLDWGF 285 >gi|17987197|ref|NP_539831.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase fraction C) [Brucella melitensis bv. 1 str. 16M] gi|17982867|gb|AAL52095.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase fraction c) [Brucella melitensis bv. 1 str. 16M] Length = 182 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 2 DGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 49 >gi|325518516|gb|EGC98206.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49] Length = 206 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S + GS ++ + + ++ S N A A++ FV+ MN ++ LG+ TH Sbjct: 27 TGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRTAFVKAMNREARRLGMRHTH 86 Query: 152 FMNAHGVVQHGHYTTARDMAIL 173 F G+ H + +TA D+A L Sbjct: 87 FREPTGLSPH-NVSTAEDLARL 107 >gi|170016615|ref|YP_001727534.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20] gi|169803472|gb|ACA82090.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20] Length = 425 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----- 87 ++D TG V+A AS +K++TAY + + K TPI I+ A Sbjct: 41 VVDARTGQVLATRNATKLGMIASQSKMLTAYAALRAIHDGKLTWDTPIPITSKADLSHQP 100 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +Y S+ K G +T+ ++ SAND + A++E L + + + L L Sbjct: 101 KYVYSHLDIKAGDHLTVRELYNAMLTISANDASFALSEYLTPKGMTTQAALQSWANELKL 160 Query: 148 SATHFMNAHGVV 159 + + NA G V Sbjct: 161 DHSKWYNAAGQV 172 >gi|317405883|gb|EFV86165.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Achromobacter xylosoxidans C54] Length = 260 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV + ML IT ++ + S + G+ ++ + L L ++ Sbjct: 38 ASISKLMTAVVVVDANQPMDEMLE--IT-DEDIDGLKHTTSRLRVGTKLSRGDMLHLALM 94 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ FV MN +++LG+++THF+ G + + ++ D+A L Sbjct: 95 SSENRAANALGRHYPGGLPAFVAAMNAKAQSLGMTSTHFIEPTG-LSSDNVSSPHDLARL 153 Query: 174 SWRIKTDFPQYMHY 187 R + P Y Sbjct: 154 -LRAASQRPLIHRY 166 >gi|167947195|ref|ZP_02534269.1| D-alanyl-D-alanine carboxypeptidase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 66 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 26/40 (65%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 Y LLD +G ++AE+ PASLTK+MTAY VF L+ Sbjct: 14 YLLLDFYSGKILAESNASQRLEPASLTKIMTAYAVFRELQ 53 >gi|153853149|ref|ZP_01994558.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814] gi|149753935|gb|EDM63866.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814] Length = 189 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +S ETN L L D + V PAS TK+MTA V + A L+ Sbjct: 51 ISSDETNTLHSAALFDVDRKKVDFSYQMFDKIYPASTTKIMTALVAL-----ENADLSDV 105 Query: 80 ITISKNAS--EYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 +T+S+NA + +T K G +TL + L L++ S ND A AIAE + + F Sbjct: 106 VTVSQNADMNSFAADEATCGIKAGDKITLSDLLYGLLLHSGNDNATAIAEYVGGSMDGFA 165 Query: 136 QHMNNTSKNLGLSATHF 152 + MN + L + T + Sbjct: 166 EMMNKEAAKLMATGTQY 182 >gi|93007306|gb|ABE97154.1| putative D-alanyl-D-alanine carboxypeptidase [Pasteuria ramosa] Length = 179 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTGFT +GF I ++A + + +IAV++G RN A++ F N Sbjct: 2 GVDGLKTGFTGNAGFCISSTAKRDNLRVIAVVMGEPSSKVRNADIAAMFDYTFAN 56 >gi|256852167|ref|ZP_05557553.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii 27-2-CHN] gi|260661800|ref|ZP_05862711.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii 115-3-CHN] gi|282933532|ref|ZP_06338903.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] gi|297205668|ref|ZP_06923064.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii JV-V16] gi|256615213|gb|EEU20404.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii 27-2-CHN] gi|260547547|gb|EEX23526.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii 115-3-CHN] gi|281302346|gb|EFA94577.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] gi|297150246|gb|EFH30543.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii JV-V16] Length = 422 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 34/244 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------S 87 +D TG V+ AS++KL+T Y+ +K+ K +T +KN S Sbjct: 51 IDKKTGEVLYAKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKLSNNS 110 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +Y SN ++ T+ + +++SAN + +A+++ +++ V M K + Sbjct: 111 DY--SNVPLQEKHQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWNI 168 Query: 148 SATHFMNAHGVVQHGHYTT---------------ARDMAILSWRIKTDFPQYMHYFQIKG 192 + G +++G + A +A + + TD+P+ ++ ++ Sbjct: 169 TDAQIYTTCG-LKNGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLTDYPEILNTSKLAE 227 Query: 193 LEIKGK----KYPNTNW---AVGTFLGA---DGMKTGFTCASGFNIVASAIQGDQSLIAV 242 L+ K K N NW + + A DG+KTG + +G + + LI + Sbjct: 228 LDFKDGSTVTKMQNWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLITI 287 Query: 243 ILGA 246 ++GA Sbjct: 288 VMGA 291 >gi|34498608|ref|NP_902823.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC 12472] gi|34104462|gb|AAQ60820.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC 12472] Length = 289 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 26/234 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91 +L+ TG + E AS++KLMTA V+ + A L +T+S Sbjct: 47 ILNGQTGEALYEKNAHQRMPIASISKLMTAMVLL----DSGAPLDQMVTVSDAEIDRVKH 102 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSAT 150 + S G+T++ L L ++ S N A +A + FV+ MN +++LG++ T Sbjct: 103 TTSRLAVGTTLSRQEMLLLALMSSENRAAATLARTAFPGGTPIFVERMNLKARSLGMTET 162 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-----FQIKGLEIKGKKYPNTN- 204 F + G+ + +TA D+A + + +P + QI + + +Y N+N Sbjct: 163 VFHDPTGLDVR-NTSTAADLAKMV-QAAQKYPLIREFTTTERHQIVSVRNRVLQYKNSNA 220 Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 W + KTG+ +G +V A G Q LI V+L A + R Sbjct: 221 LVREGDWDIAV------QKTGYIQEAGRCMVLQATVGSQPLIFVLLDAGASSAR 268 >gi|301301086|ref|ZP_07207246.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851356|gb|EFK79080.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 129 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91 +D N+G ++ E D + AS++KL+TAY++ + + T + +K +E Sbjct: 17 VDANSGQILYETKEDEVYPVASMSKLLTAYILLDKINHHELSWNTKVKPTKVEAEISHNS 76 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 +N + T+ + ++V SAN A+ IA ++ ++ FV+ M T+ Sbjct: 77 ELTNVPLDSTHSYTIKELYQAMLVGSANAAAMVIARAVSGSQTDFVKLMRVTA 129 >gi|239929347|ref|ZP_04686300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291437677|ref|ZP_06577067.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291340572|gb|EFE67528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 429 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 28/270 (10%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A + PAS K++ A + L + + +S A P Sbjct: 80 WIVADAESGEVLAAHNAHWRLAPASTLKMLFAD---TLLPKWPKSTEHRVEVSDMAGVGP 136 Query: 91 PSNST-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ K+ T T+ + + ++S ND AV + ++ +K V+ MN ++ L Sbjct: 137 GSSMVGIKEEETYTVHDLWLGVFLRSGND-AVHVLSAMNGGVEKTVEEMNEHAEELQALD 195 Query: 150 THFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQI----------KGLEIKG 197 TH ++ G G ++A D+ ++ S K DF +Y + KG E++G Sbjct: 196 THVVSPDGYDAEGQVSSAYDLTLIARSGLQKKDFREYCSTVSVKFPGETKKNKKGKEVRG 255 Query: 198 K-KYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + NTN + V + G G+K G T +G A + + L+ ++ +++ Sbjct: 256 SFEIQNTNRLLVGAYDVPVYEGIAGVKNGNTTNAGATFTGVAERDGKVLLVTVMNP-EKD 314 Query: 251 TRNKV---SASLLSMGFYNKTDRKKINYII 277 N V +A LL GF + + ++ Sbjct: 315 KGNAVYKETAKLLDWGFAAAGKVEPVGELV 344 >gi|227530146|ref|ZP_03960195.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis ATCC 49540] gi|227349929|gb|EEJ40220.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis ATCC 49540] Length = 415 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 42/279 (15%) Query: 4 FLV-IIAMAMLSNIFPFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNPASLTK 58 FLV I+ + ++S F + A+T KL +D TG V+ + + + ASLTK Sbjct: 11 FLVTILTVNVVSLGFANSASADTTKLNLNARAAYAIDAETGQVLYQKNANKTYPVASLTK 70 Query: 59 LMTAYVVFSFLKE-----KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ++T V+ +K + + TP ++K A+++ SN G + T+ + +++ Sbjct: 71 VLTLAVIEQDVKNHHLSWNQKVKITP-AVAKVANDWHFSNVPLNAGESYTIRQLTESMMI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------- 162 SA+ A A+A + + F + M +K G++ N G+ Sbjct: 130 VSADGSAEALALADAGSTAAFNKKMQAVAKKAGVTDAKIYNMIGLANGDLGKNSLKGVKK 189 Query: 163 ---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKY---------PNTNWAV 207 + +A+DMA++S + +P + + K + ++Y P +A Sbjct: 190 TAENQFSAKDMALISKYLIETYPDSLKITKTKMANFRVSANQEYQMININSLLPENGFAP 249 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 GT DG+KTG T +G I+++ + +I V L Sbjct: 250 KNGTI---DGLKTGNTDTAGKCIISTGTFAGRRVIVVAL 285 >gi|118587105|ref|ZP_01544535.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC BAA-1163] gi|118432515|gb|EAV39251.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC BAA-1163] Length = 423 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 29/258 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++A D + AS++KL+ AY+V +KE K L T + I + E Sbjct: 43 VIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQE 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 +N + T+ L+ ++ S N A+A+ ++ + K M + + Sbjct: 103 TTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIK 162 Query: 149 ATHFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + G+ + G Y +A+++A +S + DFP Sbjct: 163 GVKIYSPAGLTNGEMGAYKDKSASDDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAV 222 Query: 195 I---KGKKY--PNTNWAVGTFLGA---DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G Y NTN + G+KTG + G N + Q +I V+LG+ Sbjct: 223 VSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGS 282 Query: 247 ---LDRNTRNKVSASLLS 261 D +TR + S+LS Sbjct: 283 GSMTDESTRFVQTVSMLS 300 >gi|311896449|dbj|BAJ28857.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054] Length = 371 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 14/205 (6%) Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 +++ + + + S ND AV + ++ K V M + L TH ++ G G Sbjct: 113 VEDLWRGVFLSSGND-AVHVLANMNGGVAKTVADMQARADRLRARDTHVVSPDGYDMDGQ 171 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----------KYPNTNWAVGTFLG 212 T+A D+ + + R P++ Y + + G NT+ +G + G Sbjct: 172 VTSAYDLTLFA-RAGLRDPEFRGYCATRWAQFPGAVDKKTGQRGSFGIANTDRLLGKYPG 230 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 G+K G+T +G +A + ++L+ ++ D +A+LL GF Sbjct: 231 LIGVKNGYTTNAGATYTGAAERDGRTLLVTVMHPADGAKVYDEAAALLDWGFAAAGKAAP 290 Query: 273 INYIIKDFYQQNLSNEVPNISEEVC 297 + + +D Q + E P + V Sbjct: 291 VGELAEDGGAQAPA-EGPAAARPVA 314 >gi|116490774|ref|YP_810318.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1] gi|116091499|gb|ABJ56653.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1] Length = 423 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 29/258 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++A D + AS++KL+ AY+V +KE K L T + I + E Sbjct: 43 VIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQE 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 +N + T+ L+ ++ S N A+A+ ++ + K M + + Sbjct: 103 TTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIK 162 Query: 149 ATHFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + G+ + G Y +A+++A +S + DFP Sbjct: 163 GVKIYSPAGLTNGEMGAYKDKSASDDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAV 222 Query: 195 I---KGKKY--PNTNWAVGTFLGA---DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G Y NTN + G+KTG + G N + Q +I V+LG+ Sbjct: 223 VSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGS 282 Query: 247 ---LDRNTRNKVSASLLS 261 D +TR + S+LS Sbjct: 283 GSMTDESTRFVQTVSMLS 300 >gi|118587323|ref|ZP_01544750.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163] gi|118432312|gb|EAV39051.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163] Length = 273 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--- 95 G V+AE D AS+TKL+ Y +++ ++ + T +T +K +E+ Sbjct: 19 GSVLAEKNADQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIAEFTKGEVVAEI 78 Query: 96 -FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 +G T T+ +AL L++ S N A AE L K + + ++ G++ N Sbjct: 79 KLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLESWGINNPIIPN 138 Query: 155 AHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--K 198 G+ T +A+++ I++ +I FP+ + Q K + Sbjct: 139 PAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQEWKFNFKSNRQ 198 Query: 199 KYPNTNWAVGTFLGAD-----GMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA 246 +YP N FL G+KTG T ++V +Q DQ + V L A Sbjct: 199 EYPYLN--RFKFLAITKHKWIGLKTG-TSPDTESLVG-VVQVDQKKFVTVYLAA 248 >gi|255017532|ref|ZP_05289658.1| hypothetical protein LmonF_06693 [Listeria monocytogenes FSL F2-515] Length = 166 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASL+KLMTA++V + + + + + S + Sbjct: 42 GEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L + F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHG 162 + G Sbjct: 160 LDVDG 164 >gi|290890204|ref|ZP_06553285.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429] gi|290480150|gb|EFD88793.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429] Length = 423 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 29/258 (11%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASE 88 ++D TG ++A D + AS++KL+ AY+V +KE K L T + I + E Sbjct: 43 VIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQE 102 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 +N + T+ L+ ++ S N A+A+ ++ + K M + + Sbjct: 103 TTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIK 162 Query: 149 ATHFMNAHGVV--QHGHYT------------TARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + G+ + G Y +A+++A +S + DFP Sbjct: 163 GVKIYSPAGLTNGEMGAYKDKLASDDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAV 222 Query: 195 I---KGKKY--PNTNWAVGTFLGA---DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + G Y NTN + G+KTG + G N + Q +I V+LG+ Sbjct: 223 VSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGS 282 Query: 247 ---LDRNTRNKVSASLLS 261 D +TR + S+LS Sbjct: 283 GSMTDESTRFVQTVSMLS 300 >gi|301301062|ref|ZP_07207222.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851332|gb|EFK79056.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 257 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 7/87 (8%) Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTN----WAVGTFLGADGMKTG 219 +A+DMAI++ ++ D+P+ ++ +++ ++ +GK TN + TF DG+KTG Sbjct: 36 SAQDMAIIATKLIKDYPEILNTTKLQNVQFNDRGKTTSVTNTNRLLSDNTFQ-VDGLKTG 94 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA 246 + A+G I A+ + +I VI+GA Sbjct: 95 TSDAAGECITATTSKYGSRIITVIIGA 121 >gi|52424904|ref|YP_088041.1| DacC protein [Mannheimia succiniciproducens MBEL55E] gi|52306956|gb|AAU37456.1| DacC protein [Mannheimia succiniciproducens MBEL55E] Length = 269 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 V+ P+ AS+TKLMTA V FL+ + + ++ + + K + Sbjct: 10 VLESRSPNSILPIASVTKLMTANV---FLENNRNPNCSSSITDEDYDHIKGTRTKLPKYT 66 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 ++ + LK ++V S N A A++ S + +F++ MN ++ LG+++T F Sbjct: 67 PISCNELLKAMLVHSDNYAAHALSRSAGMSRAQFIKKMNQKAQQLGMNSTRF 118 >gi|266623227|ref|ZP_06116162.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479] gi|288864998|gb|EFC97296.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479] Length = 277 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 46/181 (25%) Query: 139 NNTSKNLGLSATHFMNAHGV----VQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQ 189 N +++LG S T+F+ +G+ ++G H TTA D+A I+++ I T P+ + + Sbjct: 1 NQKARDLGCSDTYFITPNGLDASREENGQMKEHSTTAADLARIMNYCIGTS-PKKEEFLK 59 Query: 190 IKGLEI------KGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 I G + +GK+ N N + GA KTGFT +G++ V Sbjct: 60 ITGTQSYYFTDQEGKRSYNCQNHNALLTMMSGAFSGKTGFTGGAGYSYV----------- 108 Query: 241 AVILGALDRNTRNKVSASLLSMGF-----YNKTDRKKI------NYIIKDFYQQNLSNEV 289 GAL+ R + + +LL G+ Y +D +K+ +Y ++ YQ+ E+ Sbjct: 109 ----GALEDGGR-EFTIALLGCGWPPHKTYKWSDARKLFGYGMEHYQYREVYQEKTFPEI 163 Query: 290 P 290 P Sbjct: 164 P 164 >gi|145542863|ref|XP_001457118.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424933|emb|CAK89721.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 14/125 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTKLM Y + ++ K L P A P + + TL+ L LI+ Sbjct: 130 GCLTKLMAIYTILQLCQDYKIRLQVPYY----AESVPEPKADLNSYNYFTLEQLLYALIL 185 Query: 114 KSANDIAVAIAESLCK----------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + ND +I L + + KF+ N ++ L ++ T + N G+ + Sbjct: 186 RGGNDALWSIVSGLSEKLYGITQRNLIKNKFLDLYNRNAQQLKMNNTRYTNLEGLADPNN 245 Query: 164 YTTAR 168 TTA Sbjct: 246 VTTAN 250 >gi|255066285|ref|ZP_05318140.1| penicilin-binding protein [Neisseria sicca ATCC 29256] gi|255049495|gb|EET44959.1| penicilin-binding protein [Neisseria sicca ATCC 29256] Length = 313 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPP 91 + + TG ++ + D AS++KLM+A VV + + + ITI S Sbjct: 78 IFNNKTGEILYQKNADRVMPIASISKLMSAMVVL----DARLDMNERITITSDEIDRLKG 133 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+T+T L L ++ S N A+ + FV MN +++LG+ ++ Sbjct: 134 TGSRLAVGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMHSSR 193 Query: 152 FMNAHGVVQHGHYTTARDM 170 F G + + +TA D+ Sbjct: 194 FYEPTG-LNFQNVSTANDL 211 >gi|149377678|ref|ZP_01895414.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter algicola DG893] gi|149358031|gb|EDM46517.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter algicola DG893] Length = 304 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 26/208 (12%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST-FKKGSTMTLDNALKLLI 112 AS+TKLMTA VV E LT + + P + T + S + + L++ + Sbjct: 59 ASITKLMTALVVM----ESGEPLTEWLDFRERHIPAPANAYTRIRVSSELRRSDVLRIAL 114 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S N A +A F++ MN + LG+ T F++ G + + +TA D+ Sbjct: 115 MSSENFAAHTLARHHPGGYDAFIEAMNAKAVELGMLKTTFVDPTG-LSVDNRSTAADLVR 173 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTN-------WAVGTFLGADGMKTG 219 L R + +PQ Y + + ++ + NTN W VG KTG Sbjct: 174 LV-RAASQYPQIREYSTTRYFTAQFRQPRYRLAFGNTNVLVHRESWGVGI------SKTG 226 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGAL 247 + +G +V + L+ V+L +L Sbjct: 227 YLSEAGRCLVMLFELDGKPLVTVLLDSL 254 >gi|238059325|ref|ZP_04604034.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC 39149] gi|237881136|gb|EEP69964.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC 39149] Length = 274 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF---QIK-----GLEIKGKKYPNTNW 205 + G+ G +T+A D+A+++ R+ P + Y Q + L +G + N N Sbjct: 77 DPSGLDDPGQFTSAYDLALIA-RVCFADPTFRRYALTEQARIPAQPALRRQGFQIQNENQ 135 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN-KVSASLLSMGF 264 + + GA G KTGFT + V +A G + L+ +LGA R R + A+LL GF Sbjct: 136 LIYRYPGALGGKTGFTDYARHTYVGAAQCGGRRLVVTLLGAEPRPMRGWEQGAALLDWGF 195 Query: 265 YNKTD 269 D Sbjct: 196 SLPRD 200 >gi|302549283|ref|ZP_07301625.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] gi|302466901|gb|EFL29994.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes DSM 40736] Length = 412 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 15/180 (8%) Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 +G T + + + + + S ND +AE L + + M +++LG T ++ G Sbjct: 164 EGRTYRVADLWRGVFLNSGNDAVHVLAE-LGGGWRTTARRMQAKARSLGALDTRVVSPDG 222 Query: 158 VVQHGHYTTARDMAILSWRIK---TDFPQYMHYFQIKGLEIKGKKYP--NTNW------A 206 G ++A D+A+ R+ F QY + + G YP NTN Sbjct: 223 YDTPGQVSSAFDLAVFG-RVGLRDPAFAQYCATVEARFPAGGGWSYPIRNTNRLLSGAPG 281 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN--TRNKVSASLLSMGF 264 V + G G+K G+T +G +VA+A + ++L+ ++ + T + + SLL GF Sbjct: 282 VKPYRGLIGIKNGYTTHAGNTLVAAARRDGRTLVVTVMNPQEGGGSTVYEEARSLLDWGF 341 >gi|298247807|ref|ZP_06971612.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297550466|gb|EFH84332.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 389 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP- 91 LLD + G V+ + + A TK M A + A ITI + + + P Sbjct: 157 LLDADMGTVLVDVNGHARVSVAHFTKYMVAITAL-----ENADPNQMITIDQASLDAVPK 211 Query: 92 --SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G + L + L L++ S ND A IA ++ + FV MN ++ L L+ Sbjct: 212 GLSTAQLVAGDQIPLHDLLNGLLLPSGNDAAGVIARAVGGDPQNFVAMMNEEARQLQLND 271 Query: 150 THFMNAHGVVQHGHYTTARDMA 171 THF + + + +YT+A D+A Sbjct: 272 THFNSPYAISSADNYTSAADLA 293 >gi|213024102|ref|ZP_03338549.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 77 Score = 40.0 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 25/35 (71%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + L+D +G V+AE D +PASLTK+MT+YVV Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76 >gi|228965490|ref|ZP_04126576.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794220|gb|EEM41738.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 143 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG++T F+ ++ V++A GD LI+VIL A + N + LL GF Sbjct: 36 GVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGF 88 >gi|238917030|ref|YP_002930547.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC 27750] gi|238872390|gb|ACR72100.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC 27750] Length = 415 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 52/289 (17%) Query: 5 LVIIAMAML-SNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++I+ +++L IF P + A Y L+D+++G +++ + + AS TK+MT Sbjct: 9 IIILVLSLLVCCIFCPVTTQAAGLYSKYSVLIDSDSGRILSGSNETTAVSMASTTKIMTL 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K ++TT S A+ P G +++ L+++S ND AV Sbjct: 69 IIALENC-DKNFVVTT----SAYAASMPDVQLNAVTGEQFIINDLYYSLMLESHNDSAVI 123 Query: 123 IAES-----LCK-----TEKKFVQH--------------------------MNNTSKNLG 146 IAE+ LCK +E F+ + MN + ++ Sbjct: 124 IAENAAYYLLCKNPSLRSETPFINNYNYDSSFLSEINHEQSEILVHIFTGLMNEKADDIL 183 Query: 147 LSATHFMNAHGVVQHG----HYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 LS T+++ +G+ H+TTA D+A +++ I + Y+ K + +Y Sbjct: 184 LSDTYYITPNGLDAEDNYSFHHTTAYDLAKTMAYCINNEDFLYITQTVSKTISDTTGRYH 243 Query: 202 ----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 N N + G KTGFT +G+ V + +++L +L Sbjct: 244 YQLNNKNRLLNPNEGIISGKTGFTNKAGYCYVCAYKDKNRTLCIALLAC 292 >gi|255522654|ref|ZP_05389891.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria monocytogenes FSL J1-175] Length = 168 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G + E D ASLTKLMTA++V + + + + + S + Sbjct: 42 GEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQ 101 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHG 157 T ++ + ++ SAND A + + L F + MNN +K LG+S+ T F++A G Sbjct: 102 KRTWSVRDLYSAMLTMSANDAAETLGDRL--DGANFPKEMNNQAKKLGMSSKTTFVSASG 159 Query: 158 VVQHG 162 + G Sbjct: 160 LDVDG 164 >gi|118354439|ref|XP_001010482.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila] gi|89292249|gb|EAR90237.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena thermophila SB210] Length = 869 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI----------KTDFP 182 +FV+ MN ++ LG+ + F N HG+ + +T D++ ++ I T Sbjct: 283 RFVKEMNKYAQKLGMRDSQFSNCHGLASKSNRSTCEDLSKVALNIIQTPYLQQICSTKNY 342 Query: 183 QYMHYFQIKGLEIKGKKYPNTN---W-AVGTFLGADGMKTGFTCASG 225 Q + Y IK +I+ ++ NTN W +F G+KTG T +G Sbjct: 343 QCIIYHTIKK-DIRKAEWVNTNKLLWDETNSF---KGVKTGCTDNAG 385 >gi|328884566|emb|CCA57805.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC 10712] Length = 426 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 59/268 (22%), Positives = 113/268 (42%), Gaps = 25/268 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV---FSFLKEKKAMLTTPITISKNAS 87 + + D +G ++A + P PAS K++ A + F +K + TT + S Sbjct: 76 WIVADAESGEILAAHNAHWPLAPASTLKMLFADTLLPKFPDATQKHLVTTTDLAGIGEGS 135 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+ T T+ + + ++S ND AV + S+ ++ V+ MN+ + L Sbjct: 136 ----SLVGIKEKQTYTVHDLWLGVFLRSGND-AVHVLTSMNNGLRQTVKDMNDHAAELQA 190 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWR--IKTDFPQYMHYFQ--IKGLEIKGKKYP-- 201 TH ++ G G ++A D+ +++ K DF +Y + G + GKK Sbjct: 191 LDTHVVSPDGYDAPGQVSSAYDLTLIARNGMQKKDFREYAATPRAAFPGEQKPGKKRETF 250 Query: 202 ---NTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRN 250 NTN V + G G+K G T +G A + + L+ ++ + +++ Sbjct: 251 EIQNTNRLLTGDLGVAPYQGIAGVKNGNTTHAGATFTGVAERNGRVLLVTVMNPSSKEQH 310 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK 278 + +A LL GF + +++ Sbjct: 311 AVYREAARLLDWGFAAAGKVTPVGELVR 338 >gi|238855155|ref|ZP_04645477.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 269-3] gi|260665532|ref|ZP_05866378.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii SJ-7A-US] gi|282932568|ref|ZP_06337990.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] gi|313473146|ref|ZP_07813630.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153] gi|238832236|gb|EEQ24551.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 269-3] gi|239528609|gb|EEQ67610.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153] gi|260560653|gb|EEX26631.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii SJ-7A-US] gi|281303316|gb|EFA95496.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii 208-1] Length = 422 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 50/244 (20%), Positives = 99/244 (40%), Gaps = 34/244 (13%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA------S 87 +D TG V+ AS++KL+T Y+ +K K +T +KN S Sbjct: 51 IDQKTGEVLYAKNAAKALPIASMSKLITIYLTLQAIKNGKLSWNQKLTPTKNIVKLSNNS 110 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 +Y SN ++ T+ + +++SAN + +A+++ +++ V M K + Sbjct: 111 DY--SNVPLQEKHQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWQI 168 Query: 148 SATHFMNAHGVVQHGHYTT---------------ARDMAILSWRIKTDFPQYMHYFQIKG 192 + G +++G + A +A + + TD+P+ + ++ Sbjct: 169 NGAQIYTTCG-LKNGEVGSDAYPGAGKNVENEVPAVGVAKIVDHLLTDYPEVLSTSKLAE 227 Query: 193 LEIKGK----KYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 L+ K K N NW + DG+KTG + +G + + LI + Sbjct: 228 LDFKDGSTVTKMKNWNWMLKGLSQYDSEYPLDGLKTGTSEKAGACFAGTLKYKGRRLITI 287 Query: 243 ILGA 246 ++GA Sbjct: 288 VMGA 291 >gi|467182|gb|AAA17340.1| L308_F1_36 [Mycobacterium leprae] Length = 228 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND A ++A L ++ +Q +N + LG T G+ G T+A D+ + Sbjct: 1 MQSGNDAAHSLAMQLGGMQQA-LQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGL 59 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGK-KYP-----NTNWAVGTFLGADGMKTGFTCASGF 226 +R P + + + G +P N N + + GA G KTG+T +G Sbjct: 60 F-YRYAWQNPSFSNIVATRTFNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQ 118 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKV-----SASLLSMGF 264 V +A + + L+AV+L TR + +A LL GF Sbjct: 119 TFVGAANRNGRRLMAVLL----HGTRQPIAPWEQAAHLLDYGF 157 >gi|530914|gb|AAA68435.1| Highly similar to the E.coli dacA and dacC gene products; putative [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 108 Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D TG V+ NPASLTKLMT YVV + + +T+ ++A Sbjct: 41 WVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDA 96 >gi|297158127|gb|ADI07839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis BCW-1] Length = 430 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 25/270 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A + PAS K++ A V + + + P ++ + Sbjct: 85 WMVADAESGDVLAAHNAHWELPPASTLKMLFADTVLPKIPKDREHKVAPSDLAGMGAGS- 143 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+ T ++ + + ++S ND AV + ++ + K V+ M ++ L T Sbjct: 144 -SLVGVKENLTYSVHDLWLGVFLRSGND-AVHVLSAMNGGKAKTVEEMQAHAEQLNALDT 201 Query: 151 HFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYF--QIKG-------------- 192 H + G + G ++A D+ + S K DF +Y Q G Sbjct: 202 HVVTPDGYDEKGQVSSAYDLTLFARSGLQKADFREYCSTATAQFPGEYKKDKKNKGKKKR 261 Query: 193 --LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL--D 248 I+ T + V + G G+K G+T +G A GD+ L+ ++ + Sbjct: 262 ESFAIQNTNRLLTGFNVPQYKGIAGVKNGYTTHAGSTFTGVAQHGDRVLLVTVMNPQKEE 321 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 N K +A+L GF + + +++ Sbjct: 322 ANEVYKETATLFDWGFKAADKVEPVGSLVR 351 >gi|257065656|ref|YP_003151912.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus prevotii DSM 20548] gi|256797536|gb|ACV28191.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus prevotii DSM 20548] Length = 288 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%) Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPI-------TISKNASEYPPSNSTFKKGSTM 102 P ASLTK+MT V + + PI +S+NAS + F T Sbjct: 58 PLPMASLTKIMTLLVSLDHVSNLGEL--APIDYDSYMRAVSENASM-----AGFLANETT 110 Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 T + + I+ S + A ++A ++ + FV MN L L T + NA G+ Sbjct: 111 TYRDLMYGTILASGAEAADSLAINVAGSIDSFVDLMNEKVGELNLENTSYANADGMDDRR 170 Query: 163 HYTTARDMAIL 173 ++ +A+D A+L Sbjct: 171 NFQSAKDCAML 181 >gi|298369173|ref|ZP_06980491.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298283176|gb|EFI24663.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 311 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 16/228 (7%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPP 91 +++ TG V+ + + AS++KLM+A V+ + L + + TP I + Sbjct: 76 IMNNKTGEVLYQKNANRVMPIASISKLMSAIVLLDADLNMNELVTITPEEIDR----LKG 131 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + S G+++ L L ++ S N A+A + FV MN +++LG+S + Sbjct: 132 TGSRLSIGTSLPRKELLHLSLMSSENRATHALARTYPGGINAFVAAMNAKAQSLGMSNSR 191 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFP-----QYMHYFQIKGLEIKGKKYPNTNWA 206 F G + + + +TA D++ L + +P +Y + ++Y N+N Sbjct: 192 FYEPTG-LDYRNVSTAHDLSRL-VAAASKYPLIRRNSTSNYGAVSTAS-GSQRYKNSNAL 248 Query: 207 V--GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 V G + + KTG+ +G ++V A +Q + V+L + TR Sbjct: 249 VREGGW-NIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTR 295 >gi|33592636|ref|NP_880280.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I] gi|33600419|ref|NP_887979.1| D-alanyl-D-alanine carboxypeptidase [Bordetella bronchiseptica RB50] gi|33568018|emb|CAE31931.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella bronchiseptica RB50] gi|33572282|emb|CAE41834.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I] gi|332382053|gb|AEE66900.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS] Length = 259 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 25/210 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV M+ IT + + S + G+ ++ + L L ++ Sbjct: 43 ASISKLMTALVVVDANLPMDEMIE--IT-DDDVDTLKHTTSRLRVGTVLSRGDMLHLALM 99 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ + FV MN +++LG+ T F+ G+ + ++ RD+A + Sbjct: 100 SSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSE-NVSSPRDLARM 158 Query: 174 SWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTC 222 R + P Y E+ + + + NTN W + KTGF Sbjct: 159 -LRAASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVS------KTGFIN 211 Query: 223 ASGFNIVASAIQGDQSLIAVIL---GALDR 249 +G +V A + + V+L G L R Sbjct: 212 EAGECLVMLARINGRDMAIVLLDSQGKLSR 241 >gi|311696252|gb|ADP99125.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [marine bacterium HP15] Length = 271 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 36/213 (16%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLT-----TPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 AS+TK+MTA VV + LT TP A+ Y S + S M + L Sbjct: 26 ASVTKVMTALVVLESGEPLDEWLTFHERHTPAA----ANAY----SRIRIDSEMRRKDVL 77 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 ++ ++ S N A +A + F++ MN + LG++ T F++ G+ + +TA Sbjct: 78 RIALMSSENFAAYTLARNHPGGFDAFIEAMNAKAAALGMTGTRFVDPTGLSSE-NLSTAA 136 Query: 169 DMAILSWRIKTDFPQYMHYFQ---IKGLEIKGKKYP----NTN-------WAVGTFLGAD 214 D+ L D+P+ Y +G + + +Y NTN W V Sbjct: 137 DLVKLV-NAAADYPEIREYSTTGYFRG-QFRQPRYSLSFGNTNALVHRDSWGVAL----- 189 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 KTG+ +G +V + + ++ V+L +L Sbjct: 190 -SKTGYLSEAGRCLVMISKMNGKEVVTVLLDSL 221 >gi|302536388|ref|ZP_07288730.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C] gi|302445283|gb|EFL17099.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C] Length = 487 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 26/267 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D TG V+A + PAS K++ A V L + + T ++ Sbjct: 155 WIVADAETGEVLAAHNAHWRLPPASTLKMLFADTVLPGLPKDQVHHVT----DQDMDGVG 210 Query: 91 PSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 P +S K+ T+ + + ++S ND AV + ++ K V+ M ++ L Sbjct: 211 PGSSLVGVKEDHDYTVHDLWLGVFLRSGND-AVHVLSAMNGGIDKTVKDMQAHAEELQAL 269 Query: 149 ATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIK--GLEIKGK-----K 199 TH ++ G ++A D+ ++ S K DF +Y + K G + G+ + Sbjct: 270 DTHVVSPDGYDAPEQVSSAYDLTLIARSGLQKQDFREYCGTAEAKFPGRQEAGRPREYFE 329 Query: 200 YPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 NTN + + G G+K G T +G +A +GD+ L+ ++ D N Sbjct: 330 IQNTNRLMTGAGGIAPYKGIAGVKNGNTTMAGSTFTGAAQRGDKKLLVTVMNP-DNGGLN 388 Query: 254 KV---SASLLSMGFYNKTDRKKINYII 277 V +A L GF K + ++ Sbjct: 389 GVYEETAQLFDWGFAAAGKVKPVGELV 415 >gi|126348215|emb|CAJ89936.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces ambofaciens ATCC 23877] Length = 368 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 29/232 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89 + + D ++G V+A + PAS K + A V L I E Sbjct: 53 WVVADADSGDVLAAHDAHRRLPPASTLKTLFALTVLPVLPGG-------IRHEVRGDELN 105 Query: 90 --PPSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P +S +G T + + + + S ND AV + SL M ++ L Sbjct: 106 GIGPGSSLVGIVEGHTYRVSDLWNGVFLNSGND-AVHVLASLTGGWDATAARMQAEARAL 164 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-------FQIKGLEIKGK 198 G TH + G G ++A D+A+ R P + Y F + + G Sbjct: 165 GARDTHVRSPDGYDAPGQVSSAYDLAVFG-RAGLRNPDFARYCAKVDAMFPGRNGDAYGI 223 Query: 199 KYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + NTN V + G G+K G+T +G +VA+A + ++L+ ++ Sbjct: 224 R--NTNRLLTGEDGVEPYPGLIGIKNGYTSNAGNTLVAAARRDGRTLVVTVM 273 >gi|239932885|ref|ZP_04689838.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 406 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 29/232 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89 + + D TG V+A + PAS K + A V L P + SE Sbjct: 79 WLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPAL---------PAGLRHEVSERD 129 Query: 90 ----PPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +S + T + + + + S ND AV + SL + + M + Sbjct: 130 LRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGND-AVHVLASLGGGWRTTAERMEAKAH 188 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-- 201 LG T + G G ++A D+A+ R P++ Y G+ Sbjct: 189 ALGARDTRVESPDGYDAPGQVSSAFDLAVFG-RAGLRNPEFARYCARTEARFPGRDGGSY 247 Query: 202 ---NTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 NTN V + G G+K G+T +G +VA+A Q ++L+ ++ Sbjct: 248 GIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTVM 299 >gi|302879653|ref|YP_003848217.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella capsiferriformans ES-2] gi|302582442|gb|ADL56453.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella capsiferriformans ES-2] Length = 347 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 27/220 (12%) Query: 47 PDHPWNPASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103 PD AS+TKLMTA VV L E ++ I K ++S G+T Sbjct: 117 PDAVAPIASITKLMTAMVVLDAEPDLNEALSVGEADFDILKG------THSRLGVGTTFI 170 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 LKL ++ S N A +A + V MN ++ LG++ T F + G+ + Sbjct: 171 RSEMLKLALMSSENRAASVLARNYPGGMAAAVAAMNAKARKLGMTHTTFRDPTGLNSE-N 229 Query: 164 YTTARDMA--ILSWRIKTDFPQY--MHYFQIKGLEIKGKKYPNTN-------WAVGTFLG 212 +TARD+ + + R QY ++G + + NTN W +G Sbjct: 230 VSTARDLVKMVAAARNYKLIHQYTTTATHSVEGARGRELTFNNTNPLVKNASWEIGVS-- 287 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 KTG+ +G +V A + +I V+L ++ + TR Sbjct: 288 ----KTGYINEAGRCLVMQAQIRQRPVIIVLLDSVGKTTR 323 >gi|213422563|ref|ZP_03355628.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 99 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D NT VI N+PD AS+TKLMTA VV A L + + S+ P Sbjct: 1 MVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD------ARLPLDEILKVDISQTPEM 54 Query: 93 NSTFKK---GSTMTLDNALKLLIVKSANDIAVAIA 124 + + S ++ N L L ++ S N A ++A Sbjct: 55 KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLA 89 >gi|311110173|ref|ZP_07711570.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri MV-22] gi|311065327|gb|EFQ45667.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri MV-22] Length = 201 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK------NAS 87 +D +G V+ D AS++KL+T Y+ + KK + +K N Sbjct: 67 IDLKSGQVLYAKNADKKLPVASMSKLITIYLTLDAINNKKLSWNQKVKPTKQIVKISNNP 126 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN--TSKNL 145 EY S K T+ + +++SAN A+ + +++ +++ FV+ M N S N+ Sbjct: 127 EY--SGVPLKLNHAYTIKQLYEATLIQSANGPAMLLGQAISGSQQAFVKKMRNQLVSWNI 184 Query: 146 GLSATHFMN 154 G F+ Sbjct: 185 GGGQPSFLQ 193 >gi|291441236|ref|ZP_06580626.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291344131|gb|EFE71087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 385 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 29/232 (12%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89 + + D TG V+A + PAS K + A V L P + SE Sbjct: 58 WLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPAL---------PAGLRHEVSERD 108 Query: 90 ----PPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 P +S + T + + + + S ND AV + SL + + M + Sbjct: 109 LRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGND-AVHVLASLGGGWRTTAERMEAKAH 167 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-- 201 LG T + G G ++A D+A+ R P++ Y G+ Sbjct: 168 ALGARDTRVESPDGYDAPGQVSSAFDLAVFG-RAGLRNPEFARYCARTEARFPGRDGGSY 226 Query: 202 ---NTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 NTN V + G G+K G+T +G +VA+A Q ++L+ ++ Sbjct: 227 GIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTVM 278 >gi|169823799|ref|YP_001691410.1| putative glycosyltransferase [Finegoldia magna ATCC 29328] gi|302379852|ref|ZP_07268335.1| glycosyltransferase, group 1 family protein [Finegoldia magna ACS-171-V-Col3] gi|303235354|ref|ZP_07321971.1| glycosyltransferase, group 1 family protein [Finegoldia magna BVS033A4] gi|167830604|dbj|BAG07520.1| putative glycosyltransferase [Finegoldia magna ATCC 29328] gi|302312330|gb|EFK94328.1| glycosyltransferase, group 1 family protein [Finegoldia magna ACS-171-V-Col3] gi|302493475|gb|EFL53264.1| glycosyltransferase, group 1 family protein [Finegoldia magna BVS033A4] Length = 378 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 223 ASGFNIVASAIQGDQSLIAVILGAL-DRNTRNKVSASLLSM-GFYNKTDRKKINYIIKDF 280 ++G +VAS G + LI G L DR K++ +L M K DRKKI++ IK+ Sbjct: 298 SAGLPVVASKCGGPEHLINEENGILVDRFNVEKLAEALRYMHDNIEKYDRKKISHDIKEV 357 Query: 281 Y-QQNLSNEVPNISEEVCTTQ 300 Y ++N++++V + EEV + + Sbjct: 358 YSEENITDDVIKVYEEVISKR 378 >gi|290891137|ref|ZP_06554199.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429] gi|290479101|gb|EFD87763.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429] Length = 273 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 30/234 (12%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--- 95 G V+AE AS+TKL+ Y +++ ++ + T +T +K +E+ Sbjct: 19 GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIAEFTKGEVVAEI 78 Query: 96 -FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 +G T T+ +AL L++ S N A AE L K + + ++ G++ N Sbjct: 79 KLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLESWGINNPIIPN 138 Query: 155 AHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--K 198 G+ T +A+++ I++ +I FP+ + Q K + Sbjct: 139 PAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQEWKFNFKSNRQ 198 Query: 199 KYPNTNWAVGTFLGAD-----GMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA 246 +YP N FL G+KTG T + V +Q DQ + V L A Sbjct: 199 EYPYLN--RFKFLAITKHKWIGLKTG-TSPDTESFVG-IVQSDQKQFVTVYLAA 248 >gi|94991763|ref|YP_599862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] gi|94545271|gb|ABF35318.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS2096] Length = 166 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG + ++ FN + +A +G LI +++G D + +N F N K Sbjct: 29 GVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQN---GEFYRHPFVNALTEK 85 Query: 272 --KINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 K + + +Q L VP +E Q+ Sbjct: 86 GFKDSKTLSKKARQKLEKLVPQTKKETSPKQQ 117 >gi|116491537|ref|YP_811081.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1] gi|116092262|gb|ABJ57416.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1] Length = 272 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 30/234 (12%) Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--- 95 G V+AE AS+TKL+ Y +++ ++ + T +T +K +E+ Sbjct: 18 GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIAEFTKGEVVAEI 77 Query: 96 -FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 +G T T+ +AL L++ S N A AE L K + + ++ G++ N Sbjct: 78 KLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLESWGINNPIIPN 137 Query: 155 AHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--K 198 G+ T +A+++ I++ +I FP+ + Q K + Sbjct: 138 PAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQEWKFNFKSNRQ 197 Query: 199 KYPNTNWAVGTFLGAD-----GMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA 246 +YP N FL G+KTG T + V +Q DQ + V L A Sbjct: 198 EYPYLN--RFKFLAITKHKWIGLKTG-TSPDTESFVG-IVQSDQKQFVTVYLAA 247 >gi|229824659|ref|ZP_04450728.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271] gi|229786030|gb|EEP22144.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271] Length = 454 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEY 89 +D +G ++ + P +LTKL++ +++ L ++K L +T+S A Y Sbjct: 42 VDAASGQILYQKNPMALLEVGNLTKLLSLLIIYDALDQEKIHLDDRVTLSDEAYALSQNY 101 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 SN ++ ++ L+ + + SAN +A+AE ++ F Sbjct: 102 EISNVPLRQDLDYSVAELLEAVEIGSANGALLALAEYTAGSKAAF 146 >gi|75763779|ref|ZP_00743442.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488736|gb|EAO52289.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 115 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 F G DG++T F+ ++ V++A D LI+VIL A + N + LL GF Sbjct: 6 FKGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGF 60 >gi|318064743|gb|ADV36605.1| maturase K [Trollius yunnanensis] Length = 404 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 13/116 (11%) Query: 88 EYPPSNSTFKKGSTMTL----DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 EYP NS + + + L +N L + + V +ES+ +K H+ +TS Sbjct: 155 EYPNWNSLITQKTKINLFFSKENQRLFLFLY---NFYVYESESILVFLRKQSSHLRSTSS 211 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 L THF +G ++H D + W K F MHYF+ +G I K Sbjct: 212 RAFLDRTHF---YGKIEHFLVVFHNDFHTIPWLFKDPF---MHYFRYQGKSIMSSK 261 >gi|21223223|ref|NP_629002.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] gi|7649577|emb|CAB89066.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 424 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 30/272 (11%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV---FSFLKEKKAMLTTPITISKNAS 87 + + D +G V+A + PAS K++ A + + ++K ++ I +S Sbjct: 80 WIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPKTTKRKVQVSDLAGIGSGSS 139 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 K+ T T+ + + ++S ND AV + ++ +K V MN +K L Sbjct: 140 MV-----GIKEEETYTVHDLWLGVFLRSGND-AVHVLSAMNDGVEKTVADMNAHAKELQA 193 Query: 148 SATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIK--GLEIKGKK---- 199 T ++ G G ++A D+ + S K DF +Y + K G K KK Sbjct: 194 GDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGETKKDKKGKTS 253 Query: 200 -----YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GAL 247 NTN V + G G+K G+T +G A QG + L+ ++ A Sbjct: 254 REPFEIQNTNRLLAGDADVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVLLVTVMHPAE 313 Query: 248 DR-NTRNKVSASLLSMGFYNKTDRKKINYIIK 278 D+ N K +A L GF + + +++ Sbjct: 314 DKHNEVYKETARLFDWGFRAAGKVRPVGELVR 345 >gi|318064737|gb|ADV36602.1| maturase K [Trollius ranunculoides] Length = 404 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 13/116 (11%) Query: 88 EYPPSNSTFKKGSTMTL----DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 EYP NS + + + L +N L + + V +ES+ +K H+ +TS Sbjct: 155 EYPNWNSLITQKTKINLFFSKENQRLFLFLY---NFYVYESESILVFLRKQSSHLRSTSS 211 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 L THF +G ++H D + W K F MHYF+ +G I K Sbjct: 212 RAFLDRTHF---YGKIEHFLVVFHNDFHTIPWLFKDPF---MHYFRYQGKSIMSSK 261 >gi|297201894|ref|ZP_06919291.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] gi|297147997|gb|EDY56767.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC 29083] Length = 463 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 24/255 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +G V+A + PAS K++ A + + + P ++ + Sbjct: 115 WIVTDAESGDVLAAHNAHWRLPPASTMKMLFADTLLPKFAKAETHKVVPSDLAGMGAGS- 173 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S K+G T T+ + + ++S ND AV + ++ K K V MN ++ L T Sbjct: 174 -SLVGIKEGETYTVHDLWLGVFLRSGND-AVHVLSAMNKGVAKTVTEMNEHAEELQALDT 231 Query: 151 HFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIK--GLEIKGKK------- 199 H ++ G G ++A D+ + S K DF +Y K G K KK Sbjct: 232 HVVSPDGYDAPGQVSSAYDLTLFARSGLQKKDFREYCSTVTAKFPGETEKDKKGKAVRKP 291 Query: 200 --YPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL--DR 249 NTN + + + G G+K G T +G A + + L+ ++ + Sbjct: 292 FEIQNTNRLLSGDYDISQYQGIAGVKNGNTTNAGATFTGVAERNGRVLLVTVMNPSKEEH 351 Query: 250 NTRNKVSASLLSMGF 264 N K +A L GF Sbjct: 352 NEVYKETAKLFDWGF 366 >gi|311108185|ref|YP_003981038.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8] gi|310762874|gb|ADP18323.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8] Length = 399 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV ML IT ++ + S + G+ +T + L L ++ Sbjct: 177 ASISKLMTAVVVVDANLPMDEMLE--IT-DEDVDGLKHTTSRLRVGTKLTRGDMLHLALM 233 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ FV MN ++ LG+++T F+ G+ + ++ D+A L Sbjct: 234 SSENRAANALGRHYPGGLPAFVAAMNAKAQALGMTSTRFIEPTGLSSD-NVSSPHDLARL 292 Query: 174 SWRIKTDFPQYMHY 187 R + P Y Sbjct: 293 -LRAASQRPLIHRY 305 >gi|256785674|ref|ZP_05524105.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] Length = 424 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 22/204 (10%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 K+ T T+ + + ++S ND AV + ++ +K V MN +K L T ++ Sbjct: 143 IKEEETYTVHDLWLGVFLRSGND-AVHVLSAMNDGVEKTVADMNAHAKELQAGDTTVVSP 201 Query: 156 HGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIK-----GLEIKGK--KYP----N 202 G G ++A D+ + S K DF +Y + K + KGK + P N Sbjct: 202 DGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGETKKDKKGKTSREPFEIQN 261 Query: 203 TNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDR-NTRNK 254 TN V + G G+K G+T +G A QG + L+ ++ A D+ N K Sbjct: 262 TNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVLLVTVMHPAEDKHNEVYK 321 Query: 255 VSASLLSMGFYNKTDRKKINYIIK 278 +A L GF + + +++ Sbjct: 322 ETARLFDWGFRAAGKVRPVGELVR 345 >gi|120403176|ref|YP_953005.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] gi|119955994|gb|ABM12999.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] Length = 294 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + + D +TG V+A + PAS K++ A VV L L I ++ + Sbjct: 48 WIVADMDTGAVLAARDEHGHFAPASTIKVLLAMVVLDELP-----LDATIVANEADTLVE 102 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 + + G T T L+ L++ S ND A +A L + V MN + LG T Sbjct: 103 CNCAGVTPGRTYTTRQLLEALLLVSGNDAANTLATMLGGRDVA-VMKMNAKAATLGAYGT 161 Query: 151 HFMNAHGVVQHG--HYTTARDMAIL 173 + + G+ G ++T RD+A++ Sbjct: 162 NAGSPSGIDGPGIDIWSTPRDLAVI 186 >gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] gi|133738628|emb|CAL61673.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Herminiimonas arsenicoxydans] Length = 274 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 10/235 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + ++D TG ++ E ASLTKLMTA +V L + M + + Sbjct: 26 HAIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLV---LDARLDMHEHIMITDDDVDTL 82 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+S GS +T + L+L ++ S N A A+A + + F N + L L Sbjct: 83 KFSSSRVPVGSMLTRNTLLELALMSSDNRAAHALARTYPGGIEHFRLAARNKAHALSLRR 142 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG----LEIKGKKYPNTNW 205 T+ G+ + + +TA D+A L+ +P+ G L + Y NTN Sbjct: 143 TNIEEPTGLSPY-NTSTASDLARLAMAAAR-YPEIERITTSAGDLIDLGSSARHYHNTNK 200 Query: 206 AVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 VG + KTG+T +G I+ + I V+L A R + SL Sbjct: 201 LVGDKNWTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTADAVSL 255 >gi|293607038|ref|ZP_06689381.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553] gi|292814528|gb|EFF73666.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553] Length = 399 Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMTA VV ML IT + + S + G+ ++ + L L ++ Sbjct: 177 ASISKLMTAVVVVDANLPMDEMLE--IT-DDDVDGLKHTTSRLRVGTKLSRGDMLHLALM 233 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S N A A+ FV MN +++LG+++T F+ G+ + + ++ D+A L Sbjct: 234 SSENRAANALGRHYPGGLPAFVAAMNAKAQSLGMTSTRFIEPTGLSSN-NVSSPHDLARL 292 Query: 174 SWRIKTDFPQYMHY 187 R + P Y Sbjct: 293 -LRAASQRPLIHRY 305 >gi|259502438|ref|ZP_05745340.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus antri DSM 16041] gi|259169581|gb|EEW54076.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus antri DSM 16041] Length = 412 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 43/247 (17%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEY 89 +D +G V+ + + AS+TK++T V+ ++ K IT +++ A++ Sbjct: 44 IDAESGQVLYQKNAQKTYPVASVTKILTLAVIEQDIRAHKLSWDQKITASPAVAQMANDP 103 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS- 148 SN G T+ ++ +++ SA+ A+A + + F Q M + G+ Sbjct: 104 RCSNVQLNAGEKYTVKQLVESMMLVSADGSTEALALADAGSTAAFNQKMQAVAHKAGVHD 163 Query: 149 ---------ATHFMNAH---GVVQHGH-YTTARDMAILSWRIKTDFPQYM---------- 185 +M AH GV + +A+D+A+++ + ++P+ + Sbjct: 164 AKIYNMVGLPNSYMGAHALKGVDKDAENLFSAKDIALIAKYLVEEYPETLQITSTKFADF 223 Query: 186 --------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 H I L + P +W + DG+KTG T +G IV + + Sbjct: 224 KVSADHKEHMTNINSLLPQNGAAPK-DWQI------DGLKTGNTDEAGKCIVTTGTYAGR 276 Query: 238 SLIAVIL 244 +I V L Sbjct: 277 RVIVVAL 283 >gi|225181917|ref|ZP_03735351.1| nitrogenase cofactor biosynthesis protein NifB [Dethiobacter alkaliphilus AHT 1] gi|225167357|gb|EEG76174.1| nitrogenase cofactor biosynthesis protein NifB [Dethiobacter alkaliphilus AHT 1] Length = 418 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGL 147 Y T K+G+ + ++N L + + SA+ + V + + K +Q + T K LG Sbjct: 166 YKDETLTGKEGAELLINNQLTGIKILSAHGVLVKVNIVMIKGVNDNHIQDVVKTVKELGA 225 Query: 148 SATHFMN---AHG-VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 S T+ M A G V H T+ +D+ + +TD PQ H Q + Sbjct: 226 SITNIMPLIPAPGSVFAHHEQTSNKDLEKMRQLCETDLPQMRHCQQCRA 274 >gi|20977191|gb|AAM33319.1|AF503595_3 hypothetical protein [Erwinia chrysanthemi] Length = 316 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 21/230 (9%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D V+ PD AS+TKLMTA VV + ++ I+ +K E Sbjct: 48 VVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQPLDERISVDISQTK---EMKGV 104 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 S + GS ++ + L L ++ S N A ++A + F+ MN ++ G + T + Sbjct: 105 YSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAR-AGHTHTRY 163 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 + G + + +TARD+ L + QY Q+ + K + ++++ F Sbjct: 164 VEPTG-LSTSNVSTARDLTKLLIASR----QYPLLSQLSTTQEKNAVFTQPSYSL-PFRN 217 Query: 213 ADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + KTGFT +G +V + + + V+L A + T Sbjct: 218 TNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFT 267 >gi|289769566|ref|ZP_06528944.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] gi|289699765|gb|EFD67194.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24] Length = 475 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 22/204 (10%) Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 K+ T T+ + + ++S ND AV + ++ +K V MN +K L T ++ Sbjct: 194 IKEEETYTVHDLWLGVFLRSGND-AVHVLSAMNDGVEKTVADMNAHAKELQAGDTTVVSP 252 Query: 156 HGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIK-----GLEIKGK--KYP----N 202 G G ++A D+ + S K DF +Y + K + KGK + P N Sbjct: 253 DGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGETKKDKKGKTSREPFEIQN 312 Query: 203 TNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDR-NTRNK 254 TN V + G G+K G+T +G A QG + L+ ++ A D+ N K Sbjct: 313 TNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVLLVTVMHPAEDKHNEVYK 372 Query: 255 VSASLLSMGFYNKTDRKKINYIIK 278 +A L GF + + +++ Sbjct: 373 ETARLFDWGFRAAGKVRPVGELVR 396 >gi|290958013|ref|YP_003489195.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] gi|260647539|emb|CBG70644.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22] Length = 492 Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 24/176 (13%) Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + ++S ND AV + ++ K+ V MN ++ L TH ++ G G ++A D+ Sbjct: 229 VFLRSGND-AVHVLSAMNGGVKQTVADMNEHAEELQALDTHAVSPDGYDAKGQVSSAYDL 287 Query: 171 AIL--SWRIKTDFPQYMHYFQIK--GLEIKGK---------KYPNTNW------AVGTFL 211 + S K DF +Y + K G KGK + NTN + ++ Sbjct: 288 TLFARSGLQKKDFREYCSTVRAKFPGETKKGKNGKKSRSSFEIQNTNRLLTGDSGLDSYQ 347 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV---SASLLSMGF 264 G G+K G T +G A + + L+ ++ ++N N+V +ASLL GF Sbjct: 348 GIAGVKNGNTTNAGATFTGVAERDGRVLLVTVM-HPEKNEHNQVYKETASLLDWGF 402 >gi|54309061|ref|YP_130081.1| D-alanyl-D-alanine endopeptidase [Photobacterium profundum SS9] gi|46913493|emb|CAG20279.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium profundum SS9] Length = 316 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Query: 54 ASLTKLMTAYVVFSF---LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 AS+TKLMTA V L EK + PI + + Y + + S ++ + + Sbjct: 80 ASITKLMTAMVTLDAKLPLDEK--ITFKPIDKKRMYNGY----TRIRMESRLSRGETIHI 133 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 ++ S N A A+A S F++ MN +K LG++ T F+++ G+ Sbjct: 134 ALMSSENLAAAALAGSYPGGYDAFIKAMNAKAKALGMTNTRFVDSSGL 181 >gi|318064721|gb|ADV36594.1| maturase K [Calathodes oxycarpa] Length = 396 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +ES+ +K H+ +TS L THF +G ++H D + W K F Sbjct: 184 SESILVFLRKQSSHLRSTSSRAFLDRTHF---YGKIEHFFVVFHNDFHTIPWLFKDPF-- 238 Query: 184 YMHYFQIKGLEIKGKK 199 MHYF+ +G I K Sbjct: 239 -MHYFRYQGKSIMSSK 253 >gi|228979141|ref|ZP_04139487.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228780589|gb|EEM28810.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] Length = 129 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 L++ N+G ++ + + P A+L+KLMT Y+V L ++K L + IS Sbjct: 40 LINANSGEIVYKKNEETPVQSATLSKLMTEYIVLEQLNDRKIQLDDFVQIS 90 >gi|328480234|gb|EGF49154.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC 5462] Length = 250 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+++ +V +K K +T+ ++ + + SN ++ + ++ Sbjct: 66 ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----------VV 159 ++ SAN + +A+++ +++KFV M+ K+ G++ +N G V Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185 Query: 160 QHG----HYTTARDMAILSWRIKTDFPQYMHYFQI 190 G + +A+DMA ++ + D P+ + I Sbjct: 186 GTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSI 220 >gi|28493294|ref|NP_787455.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str. Twist] gi|28476335|gb|AAO44424.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str. Twist] Length = 313 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTS 142 K+ Y P + G T+TL +L L++ SAN+ A ++ + L K+ KF + Sbjct: 126 KDGDSYAPVYA----GLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREW--LD 179 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201 KN GL T A G+ + +TA ++ +L+ + ++ P ++K I Sbjct: 180 KN-GLYNTDIYEASGLDDR-NVSTADNLIVLAKKAYSN-PVLRGIMRLKEASIPNIGLVR 236 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIV-ASAIQGDQSLIAV 242 NTN A+G G DG+KTG + A+ N++ +AI+ LI + Sbjct: 237 NTNKALG-INGIDGIKTGSSPAAKSNLLFTAAIKTKNGLIRI 277 Searching..................................................done Results from round 2 >gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] gi|254040112|gb|ACT56908.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 336/336 (100%), Positives = 336/336 (100%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM Sbjct: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA Sbjct: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD Sbjct: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI Sbjct: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ Sbjct: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK Sbjct: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 >gi|114330774|ref|YP_746996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas eutropha C91] gi|114307788|gb|ABI59031.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosomonas eutropha C91] Length = 380 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 161/312 (51%), Gaps = 14/312 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M+QF I+ + +L +FP S + +TL D ++G +A + P +PASLTK Sbjct: 8 MKQF--ILFLFLLMPVFPAWSQQPELSIAAKSFTLTDFHSGQTLASSNPHERLDPASLTK 65 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAYVVFS LK+++ L + +SK A S + +T+D + +IV+S ND Sbjct: 66 LMTAYVVFSALKQERIKLDQVVPVSKKAWRMAGSRMFIEPNKPVTVDELIHGVIVQSGND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E V MN +K LG+ THF N+ G+ HY+TA D+A+L+ I Sbjct: 126 ACVALAELIAGSEDLLVHMMNEEAKRLGMHNTHFTNSTGLTHPDHYSTANDLALLAGAII 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP+Y + ++ G N N + T DGMKTG+T A+G+ +V SA + + Sbjct: 186 RDFPEYYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDHRR 245 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 LI+V++G N R+ S LL+ GF Y++N V N+ T Sbjct: 246 LISVVMGTASPNARSIESQRLLNYGFQFFDT--------AHPYKKN--QPVANVQIWKGT 295 Query: 299 TQKEIINYNTQM 310 K + +N + Sbjct: 296 QNKIKVGFNQDI 307 >gi|258544105|ref|ZP_05704339.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis ATCC 15826] gi|258520658|gb|EEV89517.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis ATCC 15826] Length = 374 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 96/276 (34%), Positives = 140/276 (50%), Gaps = 1/276 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +I A+ S + F A + Y L+D +G + D PAS+TKLMTA Sbjct: 6 RLFTLIIAAVYSGVV-FAQAAPELPVKSYILMDAASGQTLVGKNADEKLPPASITKLMTA 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+V L K + TPIT+S+NA + S + + +++ L+ LIV+S ND A+A Sbjct: 65 YLVVEALDSGKLTMETPITVSQNAYKQEGSRMFIEVNKQVRVEDLLQGLIVQSGNDAAMA 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE L + + F MN + LG+ TH+ N G+ HYTTARD+AILS I D P Sbjct: 125 LAEYLGGSTEGFTGMMNRKAAELGMKDTHYTNPTGLPDPQHYTTARDIAILSRHIINDHP 184 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 QY HY+ K K N N + DG+KTG T +G+ + +S +GD IAV Sbjct: 185 QYYHYYGQKSYTYNKIKQDNRNRLLWRNASIDGLKTGHTKEAGYCLASSEKRGDIRFIAV 244 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +LGA + R S +L + GF + + K Sbjct: 245 VLGADKESDRYDASQALFNYGFAQFEEAVVLQAGQK 280 >gi|92113673|ref|YP_573601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] gi|91796763|gb|ABE58902.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Chromohalobacter salexigens DSM 3043] Length = 359 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L+D ++G ++ E+ D PASLTK+MTAY+V + TI Sbjct: 5 APELAASAWVLMDADSGKILVEHNADKELPPASLTKMMTAYIVEREIDAGNISGDDEATI 64 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+NA S GS +++DN L+ ++++S ND +VA+AE + +E F MN + Sbjct: 65 SENAWRTGGSRMFLNPGSKVSIDNLLRGVVIQSGNDASVALAEHIAGSEDAFADLMNQQA 124 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + L THFMN G+ HY++A D+A+++ I D+P + + K + PN Sbjct: 125 ARMKLEHTHFMNPTGLPHEEHYSSAHDLAVIAQHIIKDYPDHYEVYSEKYFTWNDIRQPN 184 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DG+KTG T A+G+ +VASA + L+AV++G R + + LLS Sbjct: 185 RNRLLWRDPNVDGLKTGHTEAAGYCLVASAKKDGTRLVAVVMGTDSDEARAQETQKLLSY 244 Query: 263 GFYNKTDRKK 272 GF ++ Sbjct: 245 GFRFFETQRL 254 >gi|120555321|ref|YP_959672.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinobacter aquaeolei VT8] gi|120325170|gb|ABM19485.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Marinobacter aquaeolei VT8] Length = 391 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 166/337 (49%), Gaps = 9/337 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 R ++ ++ ++S ++ + L+D +G VI E+ + PASLT Sbjct: 12 RTLFLVFSLLLMSGQASAQAVLIPSPPQIAGSSWVLMDPLSGRVIMEHNSNERLPPASLT 71 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTAY+V L E + ++ + IS A S + ++G+++++++ LK +I++S N Sbjct: 72 KMMTAYIVERELDEGRISMSDMVPISVKAWRTEGSRTFVQEGTSVSVEDLLKGVIIQSGN 131 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + +E FV MN ++ LG+ THF NA G+ H++TA D+A+L+ I Sbjct: 132 DASVALAEFVAGSEGAFVDIMNQQAQLLGMKDTHFENATGLPSADHFSTAYDLAVLARHI 191 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D+P+ + K + PN N + DG+KTG T +G+ +VASA +G+ Sbjct: 192 IQDYPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRGET 251 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 LIA ++G R + +L+ GF + + + + ++EV Sbjct: 252 RLIATVMGTSSSEARAQEVQKMLNYGFRYFETERLFRAGQELMASRVWGGQ----ADEVS 307 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 E + Y T + ++++ +D + + K+ Sbjct: 308 VGMPEDV-YVTIPRGSREQLESVVDLDSVIKAPIKVG 343 >gi|146329552|ref|YP_001209791.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus VCS1703A] gi|146233022|gb|ABQ14000.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus VCS1703A] Length = 375 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 3/298 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + + + +L + Y L+D +G ++AE D PAS+TKLMTA Sbjct: 5 KKCCFVTVFLLFFGVRAEVPPPDLPVKSYLLMDAQSGQILAERAADERLPPASITKLMTA 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV F+ LK K LT +TIS NA S + S +++++ L+ +IV+S ND +VA Sbjct: 65 YVTFNALKTGKIHLTDLVTISANARAQNGSRMFVEVNSQVSVNDLLQGMIVQSGNDASVA 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + T FV MN T+K L L TH+ N G+ H++TA D+A L+ + DFP Sbjct: 125 LAEYIGGTVAGFVHMMNATAKQLDLQKTHYQNPTGMPDEQHFSTAHDIARLAQALIRDFP 184 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 ++ H++Q K K PN N + DG+KTG+T A+G+ + AS +GD LI V Sbjct: 185 EFYHFYQQKEFTWNNIKQPNRNRLLWRNQNVDGLKTGYTDAAGYCLAASEKRGDWRLIGV 244 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEVC 297 +LGA R + +LL+ GF N T + +++ + L EVP ++E Sbjct: 245 VLGAEKEAQRYDAAENLLNFGFANYTQVTALRAEQVLLRGKVYKGLEAEVPIVAERTV 302 >gi|254448546|ref|ZP_05062006.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015] gi|198261929|gb|EDY86214.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015] Length = 401 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 96/278 (34%), Positives = 155/278 (55%), Gaps = 7/278 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 M+ FL+ IA+ +++F F ++A P + L+D TG V++E+ D PA Sbjct: 23 MKHFLLAIAL-FATSLFSFQAVAVPIPSPPQLNANSWILMDFATGKVLSEHNADERIEPA 81 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT+YVV+ + ++ + +S+ A S + G ++ L+ LK L+++ Sbjct: 82 SITKIMTSYVVYQAIDSGLISMSDSVPVSEKAWRMKGSRMFIEVGKSVPLEALLKGLVIQ 141 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND AVA+AE + TE+ F + MN +K LG++ +HF+N+ G HYTTARD+AILS Sbjct: 142 SGNDAAVALAEYVGGTEEAFAEQMNAAAKALGMTGSHFVNSTGWPHADHYTTARDIAILS 201 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + D+P++ + K K PN N + DG+KTG T A+G+ + ASA + Sbjct: 202 HALIRDYPEHYRVYAEKNYTYNSIKQPNRNALLWRDSSVDGIKTGHTEAAGYCLAASARR 261 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 D LI+V++G R++ S +LL+ GF RK Sbjct: 262 DDMRLISVVMGTESSGARSQYSQTLLNYGFRYYETRKL 299 >gi|152996856|ref|YP_001341691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1] gi|150837780|gb|ABR71756.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1] Length = 382 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 6/278 (2%) Query: 1 MRQFLVIIAMAMLS---NIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ L +++ ++F S+ T Y L+D TG ++ E+ D PA Sbjct: 1 MKKLLATLSLVFCFVSGSVFAAPSLIPTPPQLSASSYILMDAYTGDILVEHNADQALPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAY++ L L + IS+ A S ++G+ + L++ ++ +I++ Sbjct: 61 SLTKLMTAYIIEYELARGNLSLDDKVNISEKAWRMEGSRMFIREGTQVKLEDLMRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND +VA AE + +E F MN ++ LG++ +HF+NA G HY++A D+A L+ Sbjct: 121 SGNDASVAAAEHIAGSESAFADLMNQHAQLLGMTNSHFVNATGFPAEDHYSSAHDIAKLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 FP+ + K + PN N + DGMKTG T A+GF + ASA++ Sbjct: 181 RATILQFPENYSMYAEKEFTYNNIRQPNRNKLLWRDKTVDGMKTGHTEAAGFCLAASAVR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LI V++G R S LL GF RK Sbjct: 241 NGTRLITVVMGTKSDTARAIESQKLLDYGFRYYETRKL 278 >gi|217968699|ref|YP_002353933.1| beta-lactamase [Thauera sp. MZ1T] gi|217506026|gb|ACK53037.1| Beta-lactamase [Thauera sp. MZ1T] Length = 375 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 89/272 (32%), Positives = 142/272 (52%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR + ++ + + L+D TG +AE D PASLTKLM Sbjct: 1 MRFLIAVLVSLFSLSALAQTVPPPALAAKAWALVDHATGQTLAEKDADARIEPASLTKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ FS LKE + +S A S + +++D ++ +IV+S ND Sbjct: 61 TAYITFSKLKEGSLKPDQVVPVSTKAWRMEGSRMFIEPNKPVSVDELIRGVIVQSGNDAC 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ +E+ F MN ++ LG++ THF N+ G+ YT+ARD+A+L+ I D Sbjct: 121 VALAETIAGSEEAFAALMNREAQRLGMTNTHFTNSTGLPDPQLYTSARDLAVLASAIVRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y + +K G K PN N + DGMKTG T ++G+ +V++A +G++ L+ Sbjct: 181 FPEYYGLYSLKEFTYNGIKQPNRNRLLYMDPSVDGMKTGHTSSAGYCLVSTARRGERRLV 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +V+LGA + R + S LL+ G+ K Sbjct: 241 SVVLGAASDSVRAQESLKLLNFGYQFYETVKL 272 >gi|107103514|ref|ZP_01367432.1| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2] Length = 359 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 3/273 (1%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + Y L+D +G V+ EN D PASLTKLMTAY+ ++ + Sbjct: 2 VPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDL 61 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +T+S++A S K GS +++ + L +I++S ND +VA+AE + +E F MN Sbjct: 62 VTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMN 121 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I P + + K K Sbjct: 122 TTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIK 181 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG T +G+ +VASA++ Q +IAV+ G R + L Sbjct: 182 QPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKL 241 Query: 260 LSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 L+ GF R KK + K + +EV Sbjct: 242 LTYGFRFFESRNFYKKGTELTKGLVWKGSEHEV 274 >gi|15599194|ref|NP_252688.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1] gi|116052037|ref|YP_789120.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|218889720|ref|YP_002438584.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58] gi|254236891|ref|ZP_04930214.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719] gi|254242683|ref|ZP_04936005.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192] gi|296387449|ref|ZP_06876948.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAb1] gi|313109439|ref|ZP_07795399.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016] gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa PAO1] gi|9950191|gb|AAG07386.1|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1] gi|115587258|gb|ABJ13273.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14] gi|126168822|gb|EAZ54333.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719] gi|126196061|gb|EAZ60124.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192] gi|218769943|emb|CAW25704.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58] gi|310881901|gb|EFQ40495.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016] Length = 386 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 6/294 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + S Y L+D +G V+ EN D PASLTK Sbjct: 8 KRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + +T+S++A S K GS +++ + L +I++S ND Sbjct: 68 LMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE + +E F MN T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I Sbjct: 128 ASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 P + + K K PN N + DG+KTG T +G+ +VASA++ Q Sbjct: 188 YGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 +IAV+ G R + LL+ GF R KK + K + +EV Sbjct: 248 MIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTELTKGLVWKGSEHEV 301 >gi|126665209|ref|ZP_01736192.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17] gi|126630579|gb|EBA01194.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17] Length = 392 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 170/348 (48%), Gaps = 26/348 (7%) Query: 1 MRQFLVIIAMA-------MLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAEN 45 M++ + I++ L + ++A+T +P Y L++ +G VI EN Sbjct: 1 MKKTMAFISLFRSAFFVYTLLLVVAGNALAQTVLIPAPPQIAGSSYVLMEPKSGQVIMEN 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 PASLTK+MTAY+V L E + + + IS A + S + ++G+++T++ Sbjct: 61 NSSERLPPASLTKMMTAYIVERELDEGRIAMGDMVPISVTAWQTGGSRTFVREGTSVTVE 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + L+ ++++S ND +VA+AE + +E FV MN + LG++ T+F NA G+ HY+ Sbjct: 121 DLLRGVVIQSGNDASVALAEFVAGSEGAFVDIMNQQADLLGMTNTNFENATGLPSPNHYS 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 TA+D+A+L+ D+P+ + K + PN N + DG+KTG T +G Sbjct: 181 TAQDLALLAQATINDYPETYPIYAEKHFTFNNIRQPNRNSLLWRDNSVDGLKTGHTEEAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK---INYIIKDFYQ 282 + +VASA + D IAV++GA +R++ +L+ GF + +IK Sbjct: 241 YCLVASAKRDDTRFIAVVMGARSAESRSQEVQKMLNYGFRYYQSERLFSAGQELIKSPVW 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 +N +P E Y T + A+++ ID + + Sbjct: 301 GGAANTLPVGVFEDV--------YVTISRGARNQLESVIDLDSVVKAP 340 >gi|307544791|ref|YP_003897270.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] gi|307216815|emb|CBV42085.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] Length = 419 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 129/253 (50%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + + L+D +G VIA++ PD PASLTKLMTAY+V L + Sbjct: 58 IPAPPRLAATSWILMDAGSGRVIAQHNPDERLPPASLTKLMTAYLVERELNKGNISPDDL 117 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +S+ A S + G + + L +I+ S ND +VA+AE L + F MN Sbjct: 118 VPVSEKAWRTGGSKMFIEVGDRVPVSELLHGIIIVSGNDASVAMAEYLAGGTEPFADIMN 177 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LG+ THF+N G+ HY++ARD+A+LS I D+P++ ++ K G Sbjct: 178 QHAARLGMENTHFVNPTGLPHDNHYSSARDLALLSRHIINDYPKHYSMYRQKHFTYGGID 237 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG+T A+G+ +V+SA + D LI+V++G R + S L Sbjct: 238 QPNRNSLLWRDSSVDGLKTGWTEAAGYCLVSSAKREDMRLISVVMGTDSAEARVQESQKL 297 Query: 260 LSMGFYNKTDRKK 272 LS GF + Sbjct: 298 LSYGFRYFETLRL 310 >gi|152984820|ref|YP_001346496.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7] gi|150959978|gb|ABR82003.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7] Length = 386 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 6/294 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + S Y L+D +G V+ EN D PASLTK Sbjct: 8 KRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + +T+S++A S K GS +++ + L +I++S ND Sbjct: 68 LMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE + +E F MN T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I Sbjct: 128 ASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 P + + K K PN N + DG+KTG T +G+ +VASA++ Q Sbjct: 188 YGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 +IAV+ G R + LL+ GF R KK + K + +EV Sbjct: 248 MIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTELTKGLVWKGSEHEV 301 >gi|148549880|ref|YP_001269982.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1] gi|148513938|gb|ABQ80798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1] Length = 403 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 7/270 (2%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 27 LCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 86 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 87 TAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 146 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I Sbjct: 147 VALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMATLARAIINV 206 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 207 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQRLI 266 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 AV+ G +R + LL+ GF + Sbjct: 267 AVVFGTNSEQSRAAETQKLLTYGFRFFETQ 296 >gi|327482406|gb|AEA85716.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri DSM 4166] Length = 385 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 2/270 (0%) Query: 3 QFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +F+V+ + + ++ L A Y L+D +G V+ E+ D PASLTKLM Sbjct: 9 RFIVLTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTKLM 68 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ +++ + +T+S+ A S + + +++D+ L +I++S ND + Sbjct: 69 TAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGNDAS 128 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E+ F MN+T++ LG+S THF+NA G+ HY++A DMA L+ I + Sbjct: 129 VAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAIIYE 188 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ + LI Sbjct: 189 DPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMRLI 248 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V+ G R + LL+ GF R Sbjct: 249 SVVFGTDSEQARAAETQKLLTYGFRFFETR 278 >gi|330887942|gb|EGH20603.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. mori str. 301020] Length = 401 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 147/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++A+ + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVALIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|146284089|ref|YP_001174242.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501] gi|145572294|gb|ABP81400.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501] Length = 385 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 2/270 (0%) Query: 3 QFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +F+V+ + + ++ L A Y L+D +G V+ E+ D PASLTKLM Sbjct: 9 RFIVLTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTKLM 68 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ +++ + +T+S+ A S + + +++D+ L +I++S ND + Sbjct: 69 TAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGNDAS 128 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E+ F MN+T++ LG+S THF+NA G+ HY++A DMA L+ I + Sbjct: 129 VAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAIIYE 188 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ + LI Sbjct: 189 DPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMRLI 248 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V+ G R + LL+ GF R Sbjct: 249 SVVFGTDSEQARAAETQKLLTYGFRFFETR 278 >gi|54294448|ref|YP_126863.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens] gi|53754280|emb|CAH15757.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens] Length = 430 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 69 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 128 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 129 NDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 188 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 189 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 248 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 249 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSESVRADDS 308 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 309 EKLLNYGFRFFETHQL 324 >gi|52841739|ref|YP_095538.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628850|gb|AAU27591.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 430 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 69 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 128 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 129 NDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 188 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 189 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 248 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 249 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDS 308 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 309 EKLLNYGFRFFETHQL 324 >gi|54297421|ref|YP_123790.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris] gi|53751206|emb|CAH12617.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris] Length = 430 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 69 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 128 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 129 NDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 188 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 189 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 248 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 249 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDS 308 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 309 EKLLNYGFRFFETHQL 324 >gi|66047588|ref|YP_237429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv. syringae B728a] gi|63258295|gb|AAY39391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv. syringae B728a] Length = 395 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 17 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 76 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 77 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 136 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 137 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 196 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 197 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 256 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 257 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 294 >gi|307610210|emb|CBW99765.1| hypothetical protein LPW_15321 [Legionella pneumophila 130b] Length = 430 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 69 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 128 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 129 NDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 188 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 189 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 248 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 249 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDS 308 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 309 EKLLNYGFRFFETHQL 324 >gi|325276744|ref|ZP_08142459.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51] gi|324098127|gb|EGB96258.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51] Length = 386 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 10/292 (3%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA+L+ I Sbjct: 130 VALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPDHYSSAHDMAVLARAIINV 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 AV+ G R + LL+ GF + +K + + + + +V Sbjct: 250 AVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATGQV 301 >gi|71736558|ref|YP_276518.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557111|gb|AAZ36322.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 395 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 17 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 76 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 77 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 136 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 137 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 196 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 197 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 256 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 257 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 294 >gi|110834820|ref|YP_693679.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2] gi|110647931|emb|CAL17407.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2] Length = 386 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHP 50 MR +F V+ A+ F L+ A+ Y L+D +G +I E D Sbjct: 1 MRPQSFRFTVLALFALFGTAFSLLAQAQMVPRAPQIDAKGYLLMDATSGQIIVERNADQR 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PASLTK+MTAY+ + L++ IS A + S ++G+ + + + L+ Sbjct: 61 LPPASLTKMMTAYIAEAELQKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRG 120 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +I++S ND +VA+AE + +E F MN + LG+ +HFMNA G H+TTA+DM Sbjct: 121 IIIQSGNDASVAMAEYIAGSEDAFADLMNQHANRLGMDNSHFMNATGWPAENHFTTAKDM 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 AIL+ I DFP + + K G N N + DG+KTG T +G+ +V+ Sbjct: 181 AILARAIVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRDPSVDGLKTGHTDEAGYCLVS 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 SA + LIAV++G R + S LL+ GF K Sbjct: 241 SAKKDGMRLIAVVMGTDSEGARARESQKLLTYGFRFFETYK 281 >gi|26991483|ref|NP_746908.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida KT2440] gi|24986562|gb|AAN70372.1|AE016679_4 D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440] Length = 386 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 10/292 (3%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I Sbjct: 130 VALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMATLARAIINV 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 AV+ G +R + LL+ GF + +K + + + +++V Sbjct: 250 AVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSQV 301 >gi|331011314|gb|EGH91370.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 386 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|104783763|ref|YP_610261.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Pseudomonas entomophila L48] gi|95112750|emb|CAK17478.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Pseudomonas entomophila L48] Length = 386 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 10/292 (3%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLLITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA+L+ I + Sbjct: 130 VALSEHIAGSEDAFADMMNKTAGDLGMANSHFMNPTGLPNPEHYSSAHDMALLARAIINE 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFYWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 AV+ G +R + LL+ GF + +K + + + +N+V Sbjct: 250 AVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATNQV 301 >gi|313500782|gb|ADR62148.1| DacA [Pseudomonas putida BIRD-1] Length = 386 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 7/270 (2%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I Sbjct: 130 VALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMATLARAIINV 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 AV+ G +R + LL+ GF + Sbjct: 250 AVVFGTNSEQSRAAETQKLLTYGFRFFETQ 279 >gi|257482223|ref|ZP_05636264.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625781|ref|ZP_06458735.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648433|ref|ZP_06479776.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488990|ref|ZP_07007013.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185158|ref|ZP_07261831.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. syringae 642] gi|298156488|gb|EFH97585.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322699|gb|EFW78792.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. B076] gi|320330516|gb|EFW86495.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. race 4] gi|330867177|gb|EGH01886.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871065|gb|EGH05774.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330873695|gb|EGH07844.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. glycinea str. race 4] gi|330987605|gb|EGH85708.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 386 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|330969439|gb|EGH69505.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 386 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|296107091|ref|YP_003618791.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99 Alcoy] gi|295648992|gb|ADG24839.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99 Alcoy] Length = 407 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 46 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 105 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 106 NDLVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 165 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 166 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 225 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 226 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDS 285 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 286 EKLLNYGFRFFETHQL 301 >gi|56477153|ref|YP_158742.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1] gi|56313196|emb|CAI07841.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1] Length = 401 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 92/272 (33%), Positives = 136/272 (50%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR F+V++ + A T + L+D TG V+A PD PASLTKLM Sbjct: 27 MRLFIVLLLALLAFPASAQNVPAPTLAAKSWLLMDHATGQVLAAQEPDARIEPASLTKLM 86 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ F+ LK L + +S A S + +T+ +I++S ND Sbjct: 87 TAYLTFAALKNGTITLDQTVPVSNKAWRSEGSRMFIEPNRPVTVGELTSGMIIQSGNDAC 146 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE L +E+ F MN ++ LG+ THF N+ G+ YTTARD+ +L+ I D Sbjct: 147 VALAELLAGSEEAFAHMMNAEAQRLGMKNTHFTNSTGLPDPQLYTTARDLGLLAAAIVRD 206 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y Y+ K PN N + DG+KTG T ++G+ +++SA +G + LI Sbjct: 207 FPEYYRYYSQKEYTYNKITQPNRNRLLWLDTTVDGLKTGHTSSAGYCLISSAQRGPRRLI 266 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +V+LG R + S LL+ GF K Sbjct: 267 SVMLGTDSDTIRAQESLKLLNYGFQFHDTVKL 298 >gi|148359042|ref|YP_001250249.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str. Corby] gi|148280815|gb|ABQ54903.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str. Corby] Length = 430 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 18 PFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L Sbjct: 69 PFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHL 128 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F Sbjct: 129 NDLVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTD 188 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K Sbjct: 189 IMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYN 248 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S Sbjct: 249 GIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDS 308 Query: 257 ASLLSMGFYNKTDRKK 272 LL+ GF + Sbjct: 309 EKLLNYGFRFFETHQL 324 >gi|78485976|ref|YP_391901.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thiomicrospira crunogena XCL-2] gi|78364262|gb|ABB42227.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Thiomicrospira crunogena XCL-2] Length = 396 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 11/280 (3%) Query: 4 FLVIIAMAMLSN--------IFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 F + A+A+ S + P + A Y L+D N+G +IA N+P+ Sbjct: 8 FFTLFAIALPSAAKTVQSQPVAPIPHVVPSAPKTAAEAYILIDFNSGKIIASNHPEMRVE 67 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MT YVV + L L +TIS A + P S + G +++ N +K ++ Sbjct: 68 PASLTKIMTGYVVINELANGNIHLDDMVTISPKAWKMPGSKMFIEVGKKVSVKNLIKGMV 127 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND +VA+AE + +E+ F + MN + +LG+ TH+MNA G+ HYTTA+D++I Sbjct: 128 IQSGNDASVALAEHIAGSEEVFAELMNKYAASLGMDGTHYMNATGLPNPDHYTTAQDLSI 187 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L+ + T FP+ ++ K G N N + DG+KTG T ++G+ +VASA Sbjct: 188 LARALITKFPEEYKWYAQKKFTFNGITQYNRNKLLWQDPSVDGLKTGHTESAGYCLVASA 247 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + D LI+V+LG TR + S LL+ GF K Sbjct: 248 KRDDMRLISVVLGTDGAKTRIQESQKLLNYGFRFFETHKL 287 >gi|289675748|ref|ZP_06496638.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. syringae FF5] gi|330895583|gb|EGH27891.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976833|gb|EGH76865.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 386 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|317401414|gb|EFV82047.1| penicillin-binding protein [Achromobacter xylosoxidans C54] Length = 356 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 91/252 (36%), Positives = 143/252 (56%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L + + Sbjct: 6 APTIAAKAWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPV 65 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S++A S + +T+D + +IV+S ND +VA+AE++ +E F MN + Sbjct: 66 SEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEAAFATLMNQEA 125 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ THFMNA G+ H T+ RD+A LS + TD PQ+ HY++ K PN Sbjct: 126 ERLGMRNTHFMNATGLPDPQHMTSTRDLATLSAHLITDHPQFFHYYKQKSFTYNKITQPN 185 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ Sbjct: 186 RNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNW 245 Query: 263 GFYNKTDRKKIN 274 F N K + Sbjct: 246 SFQNFDTVKLFD 257 >gi|330938277|gb|EGH41938.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. pisi str. 1704B] Length = 386 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|254427252|ref|ZP_05040959.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881] gi|196193421|gb|EDX88380.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881] Length = 386 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHP 50 MR +F V A+L + A+ + Y L+D +G VI E+ + Sbjct: 1 MRPQSFRFTVFALCALLGTALSLQAQAQMVPRAPQIEAKGYLLMDAASGQVIVEHNAEQR 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PASLTK+MTAY+V L++ IS A + S ++G+ + + + L+ Sbjct: 61 LPPASLTKMMTAYIVEEELQKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRG 120 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +I++S ND +VA+AE + +E F MN + LG+ ++HFMNA G H+TTA+DM Sbjct: 121 IIIQSGNDASVAMAEYIAGSEDAFADLMNQHANRLGMDSSHFMNATGWPAENHFTTAKDM 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 AIL+ I DFP + + K G N N + DG+KTG T +G+ +V+ Sbjct: 181 AILARAIVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRDPTVDGLKTGHTDEAGYCLVS 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 SA + + LIAV++G + R + S LL+ GF K Sbjct: 241 SAKKDNMRLIAVVMGTASESARARESQKLLTYGFRFFETYK 281 >gi|170719804|ref|YP_001747492.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619] gi|169757807|gb|ACA71123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619] Length = 386 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 92/270 (34%), Positives = 139/270 (51%), Gaps = 7/270 (2%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLMITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN T+ +LG+S +HFMN G+ HY++A DMA L+ I Sbjct: 130 VALAEHIAGSEDAFADMMNKTAADLGMSNSHFMNPTGLPHPDHYSSAHDMATLARAIINV 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 AV+ G +R + LL+ GF + Sbjct: 250 AVVFGTNSEQSRAAETQKLLTYGFRFFETQ 279 >gi|167035845|ref|YP_001671076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1] gi|166862333|gb|ABZ00741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1] Length = 386 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 7/270 (2%) Query: 8 IAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + +L I P AE Y L+D ++G+V+ EN D PASLTKLM Sbjct: 10 LCLPVLLMITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTKLM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND + Sbjct: 70 TAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDAS 129 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I T Sbjct: 130 VALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMATLARAIITV 189 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + K K PN N + DG+KTG T +G+ +VASA++ Q LI Sbjct: 190 DPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQRLI 249 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 AV+ G +R + LL+ GF + Sbjct: 250 AVVFGTNSEQSRAAETQKLLTYGFRFFETQ 279 >gi|146308809|ref|YP_001189274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina ymp] gi|145577010|gb|ABP86542.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Pseudomonas mendocina ymp] Length = 386 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 4/303 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL ++ + + + Y L+D +G V+ E+ D PASLTKLMTAY Sbjct: 13 FLGLLTAPLAWSSQQVVPAPPQLAATSYVLMDAASGQVLVESNGDQRLPPASLTKLMTAY 72 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + + + + +S+ A S + G +++D+ L +I++S ND ++AI Sbjct: 73 IATLEINRGQIKESDMVRVSEKAWRKGGSKMFIEVGKEVSVDDLLHGIIIQSGNDASIAI 132 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E F MN ++ LG+S THFMN+ G HY++A DMA L+ I + P Sbjct: 133 AEHIAGSEDAFADMMNTHAQRLGMSNTHFMNSTGWPDPEHYSSAHDMAKLARAIIYEDPA 192 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + ++ K G K PN N + DG+KTG T +G+ +VASA++ Q LIA + Sbjct: 193 HYDIYKQKEFLWNGIKQPNRNLLLWRDSTVDGLKTGHTEEAGYCLVASAVRDGQRLIAAV 252 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV-PNISEEVCTT 299 G + R LL+ GF R KK + + + +++V ++E++ T Sbjct: 253 FGTVSEQARAAEVQKLLTYGFRFFESRTFYKKGTELAQATVWKGTTHQVKAGLAEDLTMT 312 Query: 300 QKE 302 + Sbjct: 313 LPK 315 >gi|33591361|ref|NP_879005.1| putative penicillin-binding protein precursor [Bordetella pertussis Tohama I] gi|33599159|ref|NP_886719.1| putative penicillin-binding protein precursor [Bordetella bronchiseptica RB50] gi|33571003|emb|CAE40482.1| putative penicillin-binding protein precursor [Bordetella pertussis Tohama I] gi|33575205|emb|CAE30668.1| putative penicillin-binding protein precursor [Bordetella bronchiseptica RB50] gi|332380762|gb|AEE65609.1| putative penicillin-binding protein precursor [Bordetella pertussis CS] Length = 418 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 154/295 (52%), Gaps = 3/295 (1%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 T + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L + +S Sbjct: 69 PTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVS 128 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 ++A S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ Sbjct: 129 EHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQ 188 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LG+ THFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K PN Sbjct: 189 RLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTYNKITQPNR 248 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S LL+ Sbjct: 249 NRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWS 308 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 F N K + + +V N+ + + K A+ K Sbjct: 309 FQNFDTVKLYDQSQPGLDARVWEGKVENVK---LGPPNPVWLAVPRGKAAEIKPV 360 >gi|254496461|ref|ZP_05109338.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12] gi|254354317|gb|EET12975.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12] Length = 413 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 139/251 (55%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G VIAE + PASLTK+MT YV+ + L ++ LT + Sbjct: 57 AAPILNAKAYILIDVNSGKVIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDSVR 116 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 +SK+A + S K+G + +++ LK +IV S ND VA+AE + TE F MN Sbjct: 117 VSKDAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHIGGTENSFTDIMNQQ 176 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++NLG+ +HF ++ G+ YTTA+D+AIL + DFPQY +++ K G + P Sbjct: 177 AQNLGMQNSHFTDSTGLPDPNLYTTAKDLAILGRALIVDFPQYYDWYKQKWFTYNGIRQP 236 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + DG+KTG T +GF +V+SA + + L+AV+LG + ++R S LL+ Sbjct: 237 NRNRLLWRDNQVDGLKTGHTSEAGFCLVSSAKRENMRLLAVVLGEPNDSSRADDSEKLLN 296 Query: 262 MGFYNKTDRKK 272 GF + Sbjct: 297 YGFRFFETHQL 307 >gi|295694696|ref|YP_003587934.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295410298|gb|ADG04790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 405 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 154/298 (51%), Gaps = 8/298 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 P L+D TG ++ E D PAS+TK+MT Y+ F + + KA L + Sbjct: 40 APPHLTAPSAVLMDAATGQILYEKGADDKRYPASMTKMMTLYLTFEAIHDGKAHLDDIVP 99 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 IS+NA S TL + + + V SAND AVAIAE + + +FV+ MN Sbjct: 100 ISQNAYNTGGSEVYLDPREKFTLKDMITFVAVHSANDAAVAIAEYVGGSVGQFVKRMNEK 159 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ LGL+ THF+N G+ HYTTA DMAIL+ + T +P+ + Y +I + I+ + Sbjct: 160 AQELGLTQTHFVNPDGLHDPNHYTTAMDMAILARDLITKYPEVLDYTKIHDMWIRNHTFN 219 Query: 202 N--TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 TN +G + G DG+KTGFT +G+ + A+A QG LI+VI+ D +R K + +L Sbjct: 220 VSATNNLLGKYPGMDGLKTGFTDQAGYCLTATAQQGGVRLISVIMKDPDDQSRQKDTTAL 279 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN--ISEEVCTTQKEIINYNTQMKEAKD 315 L GF N T ++K ++ EVP+ I TTQ + + +A D Sbjct: 280 LDYGFKNFTPLS----LLKPGDPLDVKAEVPDGVIESLPVTTQVPLAPLVPEGTKADD 333 >gi|70732753|ref|YP_262516.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5] gi|68347052|gb|AAY94658.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5] Length = 385 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 143/271 (52%), Gaps = 2/271 (0%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ +++ + + + ++ + Y L+D ++G+V+ EN D PASLTKL Sbjct: 8 KRLCLLVPLIITPAAWAVEAMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLTKL 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDA 127 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VA++E + +E F MN T+ +LG+S +HFMN G+ HY++A DMA+L+ I Sbjct: 128 SVAVSEHIAGSEDAFADMMNKTATDLGMSNSHFMNPTGLPNPEHYSSAHDMAVLARAIIH 187 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ L Sbjct: 188 EDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRL 247 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 IAV+ G R + LL+ GF + Sbjct: 248 IAVVFGTNSEQARAAETQKLLTYGFRFFETQ 278 >gi|302389828|ref|YP_003825649.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302200456|gb|ADL08026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 390 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 164/345 (47%), Gaps = 16/345 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R+ ++ + +S F + K P L+D TG V+ E PAS+TK+M Sbjct: 11 RKIALLSLIFFISVNFTVYAQPLPEIKSPSAILIDAGTGTVLYEKNAHEKLEPASITKIM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T V +++ K LT + IS+ A + S G TL+ LK + + SAND + Sbjct: 71 TLLVALEAIEQGKVKLTDKVKISERAWKTGGSQVFLGPGEEQTLETLLKCITIASANDAS 130 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + + + FV+ MN+ +K LG++ T+F N HG+ HYTTA D+A++S + Sbjct: 131 VAVAEYIGGSVEGFVKMMNDKAKALGMNNTNFTNPHGLSDPNHYTTAYDIALMSRELVK- 189 Query: 181 FPQY-------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 +P++ + Y + E + NTN +G + G DG+KTGF +G+ SA Sbjct: 190 YPKFFEWSTVWIDYLEHTDKEREATMLANTNKLLGKYEGLDGLKTGFHAKAGYCFAGSAK 249 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDFY-QQNLSNEVP 290 +GD LI+V+L + R + + LL GF Y+ K N ++K ++ + EV Sbjct: 250 RGDLRLISVVLNSPSSAERFEDTKKLLDYGFGRYSSVQVAKKNSVLKRLPVEKGVKKEVD 309 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + + I+ + K + + K+ K Sbjct: 310 VVASDDLS----ILVEKGKEGAIKTRLELPDKIYAPVVRGQKVGK 350 >gi|311693499|gb|ADP96372.1| serine-type D-Ala-D-Ala carboxypeptidase [marine bacterium HP15] Length = 374 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 85/331 (25%), Positives = 157/331 (47%), Gaps = 8/331 (2%) Query: 7 IIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++ +A+ + Y L+D +G +I E PASLTK+MTAY Sbjct: 1 MLMLALTGKAMSQSVLIPSPPQIAGSSYVLMDPKSGRIIMEENSHERLPPASLTKMMTAY 60 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V L E + ++ + IS NA + S + ++G+ +++++ L+ +I++S ND +VA+ Sbjct: 61 IVERELDEGRIAMSDMVPISVNAWKTEGSRTFVREGTQVSVEDLLRGVIIQSGNDASVAL 120 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E FV MN ++ LG+ T+F+NA G+ H++TA D+A+L+ I D+P+ Sbjct: 121 AEFVAGSEGAFVDIMNQQAQLLGMKDTNFVNATGLPSPEHFSTAYDLAMLARAIINDYPE 180 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + K + PN N + DG+KTG T +G+ +VASA + D IAV+ Sbjct: 181 NYPLYAEKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTRFIAVV 240 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 +G R + +L+ GF + + + + +S + Sbjct: 241 MGTNSSEARAQEIQKMLNYGFRYYESERLFRSGQELIEARVWGGQADQLSVGMTED---- 296 Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 Y T + +++ +D + + K+ Sbjct: 297 -VYVTIPRGSRNDLESTVDLDSVIKAPIKVG 326 >gi|28871936|ref|NP_794555.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] gi|213968044|ref|ZP_03396190.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato T1] gi|301383639|ref|ZP_07232057.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato Max13] gi|302063161|ref|ZP_07254702.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato K40] gi|302131282|ref|ZP_07257272.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855189|gb|AAO58250.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] gi|213927387|gb|EEB60936.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato T1] gi|330873583|gb|EGH07732.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963469|gb|EGH63729.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014742|gb|EGH94798.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 386 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + + A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|187476650|ref|YP_784673.1| penicillin-binding protein [Bordetella avium 197N] gi|115421236|emb|CAJ47741.1| penicillin-binding protein [Bordetella avium 197N] Length = 419 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 149/271 (54%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T + +D N+G V+A + PD PASLTK+MTAYVVF+ L EK+ L + + Sbjct: 69 APTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQQVPV 128 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S++A S + +T+D ++ +IV+S ND +VA+AE++ +E F MN + Sbjct: 129 SQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALMNEQA 188 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ THFMNA G+ H TT RD+A L+ + +D P+Y HY++ KG PN Sbjct: 189 ERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKITQPN 248 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T ++G+ ++++A++GD+ ++ V++GA TR + S LL+ Sbjct: 249 RNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLKLLNW 308 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 F N K + + + N+ Sbjct: 309 SFQNFDTVKLYDKSQPGLDARVWEGKAENVK 339 >gi|254491459|ref|ZP_05104638.1| beta-lactamase, putative [Methylophaga thiooxidans DMS010] gi|224462937|gb|EEF79207.1| beta-lactamase, putative [Methylophaga thiooxydans DMS010] Length = 382 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 130/259 (50%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + A Y L D ++G V+AE D PAS+TKLMT+YVV L Sbjct: 22 AGAIAPKPSAPNVAAKAYVLTDYDSGRVLAEENADERLPPASITKLMTSYVVSHELHAGN 81 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 L + IS+ A S S + + ++++ L+ +IV+S ND AVA+AE + +E+ Sbjct: 82 IQLDDEVLISEKAWRMVGSRSFIEVNTKVSVEALLRGMIVQSGNDAAVALAEHIAGSEET 141 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 F Q MN ++ LG+ T++ NA G+ HYTTARD+A+LS + DFP + ++ K Sbjct: 142 FAQMMNQYAQQLGMYGTNYRNATGLPDPDHYTTARDIAVLSAALIRDFPAHYEWYSEKEY 201 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N N + DG+KTG T +G+ + ASA + LI+V+LG N R Sbjct: 202 TYNDITQHNRNKLLWRDNSVDGLKTGHTEEAGYCLAASAKRSGMRLISVVLGTRSENARA 261 Query: 254 KVSASLLSMGFYNKTDRKK 272 + + L + GF + Sbjct: 262 QETQKLFNYGFRFFETHQL 280 >gi|312963236|ref|ZP_07777720.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6] gi|311282502|gb|EFQ61099.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6] Length = 385 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 6/307 (1%) Query: 2 RQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ +++++ + + + + + L+D +G+V+ EN D PASLTKL Sbjct: 8 KRTCLLLSLIITPAAWAVEMVPASPQLAAKAWVLMDAASGNVLVENNGDQRLPPASLTKL 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDA 127 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VA+AE + +E F MN T +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 SVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIR 187 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P + + K K PN N + DG+KTG T +G+ +V+SA++ Q L Sbjct: 188 VDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVSSAVRDGQRL 247 Query: 240 IAVILGALDRNTRNKVSASLLSMGFY----NKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 IAV+ G R + LL+ GF +K ++ S ++E+ Sbjct: 248 IAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGAELATAPVWKGATSQVKAGLAED 307 Query: 296 VCTTQKE 302 + T + Sbjct: 308 LTLTMPK 314 >gi|293602524|ref|ZP_06684970.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] gi|292819286|gb|EFF78321.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] Length = 394 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 150/296 (50%), Gaps = 3/296 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L + + Sbjct: 44 APTIAAKAWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPV 103 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S++A S + +T+D + +IV+S ND +VA+AE++ +E F MN + Sbjct: 104 SEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEA 163 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ THFMNA G+ H T+ RD+A LS + TD P + HY++ K PN Sbjct: 164 ERLGMKNTHFMNATGLPDPQHVTSTRDLATLSSHLITDHPDFFHYYKQKSYTYNKITQPN 223 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ Sbjct: 224 RNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILVVVVGTDSEATRAEESLKLLNW 283 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 F N K + + N+ K + + K K Sbjct: 284 SFQNFDTVKLFDKSQPGIDARVWEGTAENVK---LGPPKPVSIAVPRGKAGDLKPV 336 >gi|160872568|ref|ZP_02062700.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Rickettsiella grylli] gi|159121367|gb|EDP46705.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6) [Rickettsiella grylli] Length = 397 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 139/281 (49%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F IA Y L+D +G ++A D PASLTK+MT+YVV L++ + LT Sbjct: 41 FTPIAPNVNAKAYLLMDAYSGKILASKNIDEHLAPASLTKMMTSYVVSMALQQGRIHLTD 100 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + IS+ A + S K G +++ + ++ +IV S ND VA+AE + +++ FV M Sbjct: 101 LVPISEAAWKTGGSKMFVKVGDKVSVQDLMQGMIVDSGNDACVAMAEYIAGSQESFVNLM 160 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + LG+ THF++ G+ HYTTARDM+IL+ + DFP+ ++ K G Sbjct: 161 NQQAARLGMKNTHFVDVDGLPDPNHYTTARDMSILARALILDFPEDYKWYSQKWFSYNGI 220 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K PN N + DG+KTG T +GF + AS + LI +++GA R + S Sbjct: 221 KQPNRNRLLWRNPDVDGIKTGHTNEAGFCLAASGQKNGLRLITIVMGAPSDEVRAQDSQK 280 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 LL+ GF RK N + E I T Sbjct: 281 LLTYGFRFFESRKLYNAGENLATTKVWFGERSKIEAGFATD 321 >gi|229592798|ref|YP_002874917.1| putative cell division-like protein [Pseudomonas fluorescens SBW25] gi|229364664|emb|CAY52594.1| putative cell division-related protein [Pseudomonas fluorescens SBW25] Length = 385 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 4/303 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L+ + + + + + + L+D +G+V+ E+ D PASLTKLMTAY Sbjct: 12 LLISLIITPAAWAVEMVPASPQLAAKSWVLMDAASGNVLVESNGDQRLPPASLTKLMTAY 71 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + ++ + P+T+S+NA S K GS +T+ + L +I++S ND +VA+ Sbjct: 72 IATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAL 131 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E F MN T +LG++ +HFMN G+ HY++A DMAIL+ I P Sbjct: 132 AEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIRVDPV 191 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + K K PN N + DG+KTG T +G+ +V+SA++ Q LIAV+ Sbjct: 192 HYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGQRLIAVV 251 Query: 244 LGALDRNTRNKVSASLLSMGFY----NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 G R + LL+ GF +K ++ S ++E++ T Sbjct: 252 FGTNSEQARAAETQKLLTYGFRFFETQTFYQKGAELATAPVWKGATSQVKAGLAEDLTLT 311 Query: 300 QKE 302 + Sbjct: 312 MPK 314 >gi|237798412|ref|ZP_04586873.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021264|gb|EGI01321.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 386 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + + A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF Y ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFR--------FYETQNFYQKG 285 >gi|330959962|gb|EGH60222.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 386 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + + A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|114319338|ref|YP_741021.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1] gi|114225732|gb|ABI55531.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1] Length = 381 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 97/332 (29%), Positives = 159/332 (47%), Gaps = 5/332 (1%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 ++ A I A + + L+D +G V+AEN D +PASL K+MTAYVVFS Sbjct: 16 VSGAAAGQIPIPTPAAPSVGAAAHVLMDARSGQVLAENNADEARDPASLVKMMTAYVVFS 75 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+E L +T+S+ A P S + G + + + ++ +I++S ND VA+AE + Sbjct: 76 ELREGNIDLDELVTVSERAWRTPGSRMFIEPGDNVRVGDLIRGVIIQSGNDACVALAEHI 135 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 E+ F Q MN+ ++ LG+ T+F NA G+ TTARD A+L+ I DFP+Y + Sbjct: 136 AGDEQTFAQVMNSYAEQLGMENTYFANATGLPDEAMKTTARDTALLARAIVRDFPEYYGW 195 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + + N N + DG+KTG T A+G+N+ ASA + LI+V+LG Sbjct: 196 YSERSFTWNDIRQSNRNRLLWRDSSVDGLKTGHTSAAGYNLAASAEREGTRLISVVLGTA 255 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEI 303 R + SLL+ GF + + + ++ ++ + I++E+ T Sbjct: 256 SEQARADQTQSLLNYGFRFFETHRLYDEGEELTRTRVWKGDMEDLGVGIADELYVTIPRR 315 Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Y + E E + I + Sbjct: 316 -QYENLEARLRLDEPLIAPIEAGQPVGRLIIR 346 >gi|315122117|ref|YP_004062606.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495519|gb|ADR52118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 282 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 203/264 (76%), Positives = 229/264 (86%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL+ I +L I+PF +IAE N LPYYTLLD+NTGHVIAEN PD WNPASLTKLMTAY Sbjct: 11 FLIRITALILIGIYPFQAIAEENNLPYYTLLDSNTGHVIAENNPDKLWNPASLTKLMTAY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 VVFSFL++KK L TPITISKNASE PPSNSTFKKGS +TLDNALKLLIVKSANDIAVAI Sbjct: 71 VVFSFLEQKKITLETPITISKNASEQPPSNSTFKKGSILTLDNALKLLIVKSANDIAVAI 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AESLC TE++FV+HMN++++ LGL T FMN+HGVVQ+GHYTTARDM ILSWRIKT F Q Sbjct: 131 AESLCNTEEEFVKHMNDSAQTLGLLRTKFMNSHGVVQNGHYTTARDMTILSWRIKTHFSQ 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y HYFQIKGL+IK KKYPNTNWA+G FLGADGMKTGFTCASGFNIVASA QG++SLI V+ Sbjct: 191 YAHYFQIKGLKIKNKKYPNTNWAIGIFLGADGMKTGFTCASGFNIVASASQGNRSLITVV 250 Query: 244 LGALDRNTRNKVSASLLSMGFYNK 267 LGALDR++RN++S LLS GF K Sbjct: 251 LGALDRDSRNQISEKLLSAGFDKK 274 >gi|33594884|ref|NP_882527.1| putative penicillin-binding protein precursor [Bordetella parapertussis 12822] gi|33564960|emb|CAE39907.1| putative penicillin-binding protein precursor [Bordetella parapertussis] Length = 418 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 154/295 (52%), Gaps = 3/295 (1%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 T + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L + +S Sbjct: 69 PTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVS 128 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 ++A S + +T+D + +IV+S ND +VA+AE++ +E F MN ++ Sbjct: 129 EHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQ 188 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LG+ THFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K PN Sbjct: 189 RLGMRNTHFMNSTGLPDPQHVTTARDLATLAVHLLSDYPDYYHYYKQKSYTYNKITQPNR 248 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S LL+ Sbjct: 249 NRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWS 308 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 F N K + + +V N+ + + K A+ K Sbjct: 309 FQNFDTVKLYDQSQPGLDARVWEGKVENVK---LGPPNPVWLAVPRGKAAEIKPV 360 >gi|311109424|ref|YP_003982277.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8] gi|310764113|gb|ADP19562.1| D-alanyl-D-alanine carboxypeptidase DacC 2 [Achromobacter xylosoxidans A8] Length = 362 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 91/252 (36%), Positives = 141/252 (55%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L EK+ L + + Sbjct: 12 APTIAAKAWIVMDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALDEKRLTLEQTVPV 71 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A S + +T+D + +IV+S ND +VA+AE++ +E F MN + Sbjct: 72 SERAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEASFASLMNQEA 131 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+ THFMNA G+ H T+ RD+AILS + TD P + HY++ K PN Sbjct: 132 ERLGMRNTHFMNATGLPDPQHMTSTRDLAILSSHLITDHPDHFHYYKQKSYTYNKITQPN 191 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S LL+ Sbjct: 192 RNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNW 251 Query: 263 GFYNKTDRKKIN 274 F N K + Sbjct: 252 SFQNFDTVKLFD 263 >gi|30249456|ref|NP_841526.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC 19718] gi|30138819|emb|CAD85396.1| D-alanyl-D-alanine carboxypeptidase 1 (S11) family [Nitrosomonas europaea ATCC 19718] Length = 385 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 92/271 (33%), Positives = 145/271 (53%), Gaps = 4/271 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M+QF I ++ +L+ I P S + L+D ++ +A + P +PASLTK Sbjct: 13 MKQF--IFSLFLLATISPAWSQQPELAVAAKSFILIDFHSSQTLASSNPHERLDPASLTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAYVVFS L++++ + + +S + S + +T+D + +IV+S ND Sbjct: 71 LMTAYVVFSALQQERIKIDQVVPVSNRSWRMVGSRMFIEPNKQVTVDELIHGVIVQSGND 130 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E FV MN +K LG+ THF N+ G+ HY+TA D+A+L+ I Sbjct: 131 ACVALAELIAGSEDLFVHMMNEEAKRLGMHNTHFTNSTGLTHSDHYSTAHDLALLAAAII 190 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP+ + ++ G N N + T DGMKTG+T A+G+ +V SA + + Sbjct: 191 RDFPERYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDQRR 250 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LI+V++G N R+ S LL+ GF Sbjct: 251 LISVVMGTASPNARSIESQRLLNYGFQFFDT 281 >gi|330953021|gb|EGH53281.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae Cit 7] Length = 386 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ +++ + + + A Y L+D +G+V+ EN D PASLTK Sbjct: 8 KRLCLLVPLIITPTGWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + P + + K G K PN N + DG+KTG T +G+ +V+SA++ Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 LIAV+ G R + LL+ GF ++FYQ+ Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFET--------QNFYQKG 285 >gi|94501220|ref|ZP_01307742.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65] gi|94426647|gb|EAT11633.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65] Length = 380 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 3/275 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 MR + + F SI + Y L+D N+G V+ E+ D PASLT Sbjct: 1 MRVLIASFLFLFSTVTFSAPSIIPKPPSLAASSYILMDANSGEVLVEHNADKVLPPASLT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMTA++ F L L + +S A + S ++G+T+ +++ L+ +I++S N Sbjct: 61 KLMTAFIAFEELSYGNIALDEKVRVSVKAWKAEGSRMFIREGTTVPVEDLLRGIIIQSGN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D ++A+AE + TE F MN + +LG++ + F NA G+ GH+++ARDMA L+ I Sbjct: 121 DASIAMAEHISGTESSFADIMNQYAVSLGMTNSQFKNATGLPSEGHHSSARDMATLARAI 180 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 + Q+ + K + + N N + DG+KTG T +G+ +V+SA D Sbjct: 181 IFNHKQHYPIYSEKKFKYNNIEQTNRNRLLFWNDKVDGLKTGHTEEAGYCLVSSAQDEDM 240 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LIAV++GA R + S LL+ GF + Sbjct: 241 RLIAVVMGANSERARARESNKLLTYGFRYFESHRL 275 >gi|270160121|ref|ZP_06188777.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae D-4968] gi|289165102|ref|YP_003455240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Legionella longbeachae NSW150] gi|269988460|gb|EEZ94715.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae D-4968] gi|288858275|emb|CBJ12143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Legionella longbeachae NSW150] Length = 422 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 137/251 (54%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G +IAE + PASLTK+MT YV+ + L ++ LT + Sbjct: 66 AAPILNAKAYILIDVNSGKIIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDNVR 125 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 +S+ A + S K+G + +++ LK +IV S ND VA+AE L TE F MN Sbjct: 126 VSREAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHLGGTENSFTDLMNQQ 185 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++NLG+ +HF ++ G+ YTTA+D+AIL + DFPQY +++ K G + P Sbjct: 186 AQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALIIDFPQYYEWYKQKWFTYNGIRQP 245 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + DG+KTG T +GF +V+SA + + L+AV+LG ++R S LL+ Sbjct: 246 NRNRLLWRDNQVDGIKTGHTNDAGFCLVSSAKRDNMRLLAVVLGEPTDSSRADDSEKLLN 305 Query: 262 MGFYNKTDRKK 272 GF + Sbjct: 306 YGFRFFETHQL 316 >gi|77461187|ref|YP_350694.1| penicillin-binding protein 6 [Pseudomonas fluorescens Pf0-1] gi|77385190|gb|ABA76703.1| putative cell division-related protein [Pseudomonas fluorescens Pf0-1] Length = 385 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 6/282 (2%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 A + + P Y L+D N+G+V+ EN D PASLTKLMTAY+ ++ Sbjct: 22 AFAAEMMPS---PPQLAAKSYVLMDANSGNVLVENNGDQRLPPASLTKLMTAYIATLEIR 78 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + P+T+S+NA S K GS +T+ + L +I++S ND +VA+AE + + Sbjct: 79 RGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVAEHIAGS 138 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E F MN T +LG++ THFMN G+ HY++A DMAIL+ I + P + + Sbjct: 139 EDAFADLMNKTVADLGMTNTHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQ 198 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K G K PN N + DG+KTG T +G+ +V+SA++ LIAV+ G Sbjct: 199 KEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEV 258 Query: 251 TRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 R + LL+ GF + +K + + + +++V Sbjct: 259 ARAAETQKLLTYGFRFFETQTFYQKGTELAQAPVWKGTTSQV 300 >gi|83648479|ref|YP_436914.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] gi|83636522|gb|ABC32489.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396] Length = 386 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 17/342 (4%) Query: 1 MRQFLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR ++ + ++ + A Y L+D +G +I E + PASL Sbjct: 6 MRVYIAFFLCWAVGAAWADQASLIPSAPQIAASSYILMDAESGAIIVEKNSEERLPPASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT+YV+ + + IS A + S ++G+++ L + LK +I++S Sbjct: 66 TKMMTSYVLDYEVDQGNVSFNDEAPISVKAWKTGGSKMFVREGTSVRLGDLLKGIIIQSG 125 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +VA+AE L +E F MN ++ LG+S T+F NA G+ HY++A D+A L+ Sbjct: 126 NDASVAVAEFLAGSEDAFASMMNQHAQRLGMSNTNFANATGLPSENHYSSAHDLAKLAKA 185 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I DFP + K + PN N + DG+KTG T +G+ +V+SA++ Sbjct: 186 IINDFPNQYPLYSEKYFTYNNIRQPNRNLLLWRDKSVDGLKTGHTEEAGYCLVSSAVRDG 245 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNI 292 LI+V++GA R + + LL+ GF K + K D + + + Sbjct: 246 MRLISVVMGAKSEEARARETLKLLNYGFRYFETHKLYSAGQKLVDSDIWAGSADTLPLGL 305 Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 S+E+ T + KD +D +K+ ++ Sbjct: 306 SKEIVVTIP---------RGKKDALEATVDIDKVIKAPIEVG 338 >gi|304310091|ref|YP_003809689.1| Penicillin-binding protein 5 precursor (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium HdN1] gi|301795824|emb|CBL44023.1| Penicillin-binding protein 5 precursor (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium HdN1] Length = 385 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 7/278 (2%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNP 53 M F+ + A+ ++ F + E P + L++ ++G V+ E+ D P Sbjct: 1 MIGFIANTLFIGALTASNASFAAETELPTPPQLAASSWILIEPSSGQVLVEHNADEQLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK+MT+YV +KE A + +S+ A S + G+ + + + ++ +I+ Sbjct: 61 ASLTKMMTSYVAADKIKEGLAGWDDEVLVSEKAWRMGGSKMFIRVGTQVKIRDLMRGIII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VA+AE + +E+ F MN T+K +G++ TH++NA G+ HYTTARD+AIL Sbjct: 121 QSGNDASVALAEHIAGSEESFADLMNQTAKRIGMTHTHYVNATGLPDPSHYTTARDLAIL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + D P+ + K K PN N + DG+KTG T +G+ +VASA Sbjct: 181 AQHVIFDHPEDYELYSEKEFLYNNIKQPNRNLLLWRDNSVDGIKTGHTKEAGYCLVASAK 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + L+AV++ R + LL+ GF + + Sbjct: 241 RDGMRLVAVVMNTNSEKARASETMKLLTYGFRFYENVR 278 >gi|149377633|ref|ZP_01895371.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893] gi|149358106|gb|EDM46590.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893] Length = 388 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 6/276 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 + + + +L P + A Y L+D +G VI E PASL Sbjct: 8 RAFTAVLLLILLPAMPVAAQAVLIPSSPQIAASSYILMDPLSGRVIMEENSHERLPPASL 67 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTAY+V L E + L+ + IS NA S + K+G+ ++++N LK +I++S Sbjct: 68 TKMMTAYIVERELDEGRISLSDMVPISVNAWRTEGSRTFVKEGTEVSVENLLKGVIIQSG 127 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +VA+AE + +E FV MN ++ LG++ + F NA G+ H++TA D+A+L+ Sbjct: 128 NDASVALAEYIAGSEGAFVDIMNQQAQILGMNESSFANATGLPAPDHFSTAYDLALLAKA 187 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I D+P+ + K + PN N + DG+KTG T +G+ +VASA + D Sbjct: 188 IINDYPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRND 247 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LIAV++G ++R + +L+ GF + Sbjct: 248 TRLIAVVMGTDSTSSRAQEVQKMLNYGFRYYQSERL 283 >gi|326794762|ref|YP_004312582.1| beta-lactamase [Marinomonas mediterranea MMB-1] gi|326545526|gb|ADZ90746.1| Beta-lactamase [Marinomonas mediterranea MMB-1] Length = 382 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 6/278 (2%) Query: 1 MRQFL-VIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ + +++ L +I + Y L+D TG V+ E PA Sbjct: 1 MKRLIGILLVFTSLFSIEVNAAPSLIPAPPQLSASSYILMDAYTGEVLVEQNSHKELPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAY+ + + +S+ A S ++G+ + L++ ++ +I++ Sbjct: 61 SLTKLMTAYIADYEIARGNISYDDQVRVSEAAWRMKGSRMFIREGTRVKLEDLMRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND +VA+AE + E FV MN ++ LG+ THF N+ G HY++A D+A+LS Sbjct: 121 SGNDASVAVAEHIAGAEGAFVDLMNQHAQLLGMKNTHFQNSTGFPAENHYSSAYDIALLS 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 FP+ + K + PN N + DG+KTG T A+G+ + ASA++ Sbjct: 181 RAKILQFPESYKMYAEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTQAAGYCLAASAVR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LI+V++G R S L++ GF RK Sbjct: 241 NGTRLISVVMGTSSDEARATESQKLMNYGFRYYETRKL 278 >gi|87119258|ref|ZP_01075156.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121] gi|86165649|gb|EAQ66916.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121] Length = 408 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 139/278 (50%), Gaps = 6/278 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 M++ ++ A MLS + + P Y LLD TG V+ E+ + PA Sbjct: 27 MKKPFILFAALMLSLVTSVYAAPTLIPAPPQLSATSYILLDAYTGEVLVEHNSRKEYPPA 86 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAY+V L + +S+ A S ++G+ + L++ ++ +I++ Sbjct: 87 SLTKLMTAYIVDYERNRGNIGLEDMVRVSEKAWRMEGSRMFIREGTKVNLEDLMRGIIIQ 146 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND +VA+AE + +E F MN ++ LG++ +HF+N+ G GHY++A D+A+LS Sbjct: 147 SGNDASVAVAEHIAGSEGAFADLMNQHAELLGMNNSHFVNSTGYPAEGHYSSAYDLAVLS 206 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 FP + K + PN N + DG+KTG T A+G+ + ASA++ Sbjct: 207 RAKIIQFPDSYPMYSEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTEAAGYCLAASAVR 266 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LI+V++G R + LL+ GF RK Sbjct: 267 NGTRLISVVMGTKSDEARANETQKLLNYGFRYYETRKL 304 >gi|53802656|ref|YP_112644.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] gi|53756417|gb|AAU90708.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] Length = 392 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 8/305 (2%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + Y L D +G V+AE D PASLTK+MTAY++F L + L Sbjct: 33 PLIPAPPELPAKAYLLQDFYSGRVLAERNADERLEPASLTKVMTAYILFRELAQGHVKLE 92 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +T+S+ A S + G+ ++++N LK +IV+S ND +VA+AE + E F Q Sbjct: 93 DMVTVSEKAWRTEGSRMFAQVGAQISVENLLKGMIVQSGNDASVALAEHVAGDEAVFAQL 152 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN ++ LG++ THF N+ G+ HYTTARD+A L+ + +FPQY + IK Sbjct: 153 MNQNAERLGMTNTHFKNSMGLPDPDHYTTARDLATLTRAMIKEFPQYYPWHAIKEFVFND 212 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K N N + DG+KTG T +G+ ++ SA++ +++V+LG R + Sbjct: 213 IKQVNRNRLLWRDPSVDGVKTGHTEGAGYCLITSAVRDGDRMVSVVLGTKSDTDRANANQ 272 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSN----EVPN-ISEEVCTT--QKEIINYNTQM 310 +LL+ GF + K ++ ++ + + EVP + E++ T + + N T M Sbjct: 273 ALLNYGFR-FFETKPVHKGGEELAKARIWKGEQTEVPVGVDEDLYATFPRGQFQNLKTAM 331 Query: 311 KEAKD 315 + D Sbjct: 332 EVDAD 336 >gi|193071481|ref|ZP_03052393.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|192955203|gb|EDV85694.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] Length = 388 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G Y++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQYSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|163859128|ref|YP_001633426.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella petrii DSM 12804] gi|163262856|emb|CAP45159.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella petrii] Length = 414 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 140/250 (56%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T + +D ++G V+A PD PASLTK+MTAYVVF+ LKEK+ L + + Sbjct: 64 APTIAARAWITIDASSGQVLAAANPDMQIEPASLTKIMTAYVVFNALKEKRITLEQQVPV 123 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S++A S + +T+D ++ +IV+S ND +VA+AE++ +E F MN + Sbjct: 124 SEHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSESAFAALMNQEA 183 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL THFMNA G+ H TT D+A+LS + D P Y HY++ K PN Sbjct: 184 ERLGLKRTHFMNATGLPDPQHVTTVADLAVLSAALINDHPDYYHYYKQKEFTYNKITQPN 243 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T A+G+ +V++A++GD+ ++ V+ GA TR + S LL+ Sbjct: 244 RNRLLWADPSVDGMKTGHTDAAGYCLVSTALRGDRRVLTVLAGADSEATRAEESLKLLNW 303 Query: 263 GFYNKTDRKK 272 F N + Sbjct: 304 SFQNFDTVQL 313 >gi|288942562|ref|YP_003444802.1| beta-lactamase [Allochromatium vinosum DSM 180] gi|288897934|gb|ADC63770.1| Beta-lactamase [Allochromatium vinosum DSM 180] Length = 380 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 6/300 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + Y L+D +TG +AE D PASLTK+MTAY VF L ++ LT + Sbjct: 30 APPELEAKGYLLVDFHTGKTLAELNADERLEPASLTKIMTAYTVFRELASERIKLTDQVL 89 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 +S+ A S + G ++L++ LK +I++S ND +VA+AE + + F MN Sbjct: 90 VSEKAWRTGGSKMFIEVGKHVSLEDLLKGMIIQSGNDASVALAEYVSGNVESFANLMNAH 149 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 +K LG++ +HF N +G+ YTTARDMA ++ + +FP+Y ++ + G Sbjct: 150 AKRLGMTNSHFTNPNGLPDPELYTTARDMARVAVALIREFPEYYAWYSNQEFTYNGITQA 209 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + ADG+KTG+T A+G+ +V SA + D LI+V++G R + S +LL+ Sbjct: 210 NRNPLLKRDPTADGIKTGYTKAAGYCLVGSAKRDDMRLISVVMGTPSPRARAEASLALLN 269 Query: 262 MGFYNKTDRK--KINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 GF K + I++ + +Q+ P + + + ++++ D Sbjct: 270 YGFRTYESHKLYPVGQPIENLRVWYGEQDTLPVGPERDVVATIPRGQYDKLSARIEKTSD 329 >gi|323940908|gb|EGB37096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] Length = 388 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAERLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|218558891|ref|YP_002391804.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli S88] gi|218365660|emb|CAR03397.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli S88] Length = 388 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|330811926|ref|YP_004356388.1| cell division-related protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380034|gb|AEA71384.1| putative cell division-related protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 385 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 131/251 (52%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + + L+D ++G V+ EN D PASLTKLMTAY+ ++ + P Sbjct: 28 MPAPPQLAAKSFVLMDASSGEVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDP 87 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +T+S+NA S K GS +T+ + L +I++S ND +VA++E + +E F MN Sbjct: 88 VTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSEDAFADMMN 147 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 T +LG++ +HFMN G+ HY++A DMA+L+ I + P + + K G K Sbjct: 148 KTVADLGMTNSHFMNPTGLPNPEHYSSAHDMALLARAIIHEDPAHYAIYSQKEFFWNGIK 207 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG T +G+ +V+SA++ LIAV+ G R + L Sbjct: 208 QPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTSSEVARAAETQKL 267 Query: 260 LSMGFYNKTDR 270 L+ GF + Sbjct: 268 LTYGFRFFETQ 278 >gi|323968145|gb|EGB63554.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] Length = 388 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVGRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T K ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVKILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + I+ T++E + + K + +D +++T Sbjct: 301 YGDKETIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|307823377|ref|ZP_07653606.1| Beta-lactamase [Methylobacter tundripaludum SV96] gi|307735362|gb|EFO06210.1| Beta-lactamase [Methylobacter tundripaludum SV96] Length = 389 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 175/355 (49%), Gaps = 21/355 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLS--------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 + V++ ++L + A T Y L++ +TG V+AEN D P Sbjct: 5 KNLPVLLFFSLLIATTAANAEDAEITTPAAPTIAASGYILMNYDTGKVLAENNADVKLAP 64 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK+M+ YVVF + L +TIS+ A E P S + G+ + +++ LK +I+ Sbjct: 65 ASLTKIMSVYVVFREISNGHLHLNDLVTISQKAWETPGSRMFIEVGNQVKVEDLLKGVII 124 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VA+AE + E F MN ++ LG+ +HF +++G+ HYTTARD+AIL Sbjct: 125 QSGNDASVALAEHIAGDETTFADMMNQHAERLGMKNSHFQDSNGLPIDNHYTTARDLAIL 184 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + +FP Y +F K N N + DG+KTGFT A+G+ +VASA+ Sbjct: 185 SQALIKEFPDYYRWFSQKEFTFNNIVQHNRNQLLSRDETVDGIKTGFTDAAGYCLVASAL 244 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEV 289 + D LI+V++GA N R + +LL+ GF K K + ++ + N Sbjct: 245 RNDMRLISVVMGASSPNARANENQNLLNYGFRFFEAHKLYQGKTSLAEARVWKGDTKNLQ 304 Query: 290 PNISEEVCTTQ--------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++E++ T K +IN + ++ KE + +TL + K Sbjct: 305 LGLAEDLYATIPRGHYNDLKAVINIDKKITAPV-KEGTKLGTVNVTLKNEVVANK 358 >gi|157161502|ref|YP_001458820.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli HS] gi|157067182|gb|ABV06437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS] Length = 388 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T ++G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAVI+GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|309702334|emb|CBJ01656.1| penicillin-binding protein 6B [Escherichia coli ETEC H10407] Length = 388 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|168790220|ref|ZP_02815227.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|195939526|ref|ZP_03084908.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC4024] gi|254793720|ref|YP_003078557.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. TW14359] gi|261226456|ref|ZP_05940737.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|189370276|gb|EDU88692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|226237417|dbj|BAH46939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O55:H7] gi|254593120|gb|ACT72481.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O157:H7 str. TW14359] gi|320188186|gb|EFW62850.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320641418|gb|EFX10862.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. G5101] gi|320646787|gb|EFX15664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str. 493-89] gi|320652066|gb|EFX20409.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str. H 2687] gi|320657428|gb|EFX25226.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663244|gb|EFX30549.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str. USDA 5905] Length = 388 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|226942990|ref|YP_002798063.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ] gi|226717917|gb|ACO77088.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ] Length = 404 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 139/274 (50%), Gaps = 3/274 (1%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + Y L+D +G V+ E+ + PASLTKLMTAY+ +K + + Sbjct: 46 AIPAPPQLASTAYLLMDAASGQVLIESNGEQRLPPASLTKLMTAYIATLEIKRGQIKESD 105 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T+S+ A S + G+ +++ + L +I++S ND +VA+AE + +E F M Sbjct: 106 LVTVSERAWRTGGSRMFIQVGTQVSVSDLLHGIIIQSGNDSSVALAEHIAGSEDAFADMM 165 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N T++ LGLS THFMNA G+ HY++A DMA L+ I D P + + K Sbjct: 166 NATAQRLGLSNTHFMNATGLPHAEHYSSAHDMARLARAIIYDDPAHYAIYAQKEFFWNNI 225 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K PN N + DG+KTG T +G+ +VASA++ Q LIAV+ G R + Sbjct: 226 KQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDGQRLIAVVFGTKSEQARAAETQK 285 Query: 259 LLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 LL+ GF + +K + + + SNEV Sbjct: 286 LLTYGFRFFETQTFFQKNVELARSPVWKGASNEV 319 >gi|323977820|gb|EGB72906.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREDEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|306814866|ref|ZP_07449028.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101] gi|305852260|gb|EFM52712.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWAKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|256017815|ref|ZP_05431680.1| D-alanyl-D-alanine carboxypeptidase [Shigella sp. D9] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|194428756|ref|ZP_03061292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|194436027|ref|ZP_03068129.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|215487233|ref|YP_002329664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O127:H6 str. E2348/69] gi|218554572|ref|YP_002387485.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI1] gi|218705552|ref|YP_002413071.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UMN026] gi|293405492|ref|ZP_06649484.1| dacD [Escherichia coli FVEC1412] gi|298381180|ref|ZP_06990779.1| dacD [Escherichia coli FVEC1302] gi|307312424|ref|ZP_07592058.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W] gi|312967243|ref|ZP_07781459.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75] gi|331668710|ref|ZP_08369558.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA271] gi|194413203|gb|EDX29489.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|194424755|gb|EDX40740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|215265305|emb|CAS09700.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli O127:H6 str. E2348/69] gi|218361340|emb|CAQ98928.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli IAI1] gi|218432649|emb|CAR13544.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli UMN026] gi|222033782|emb|CAP76523.1| Penicillin-binding protein 6B [Escherichia coli LF82] gi|291427700|gb|EFF00727.1| dacD [Escherichia coli FVEC1412] gi|298278622|gb|EFI20136.1| dacD [Escherichia coli FVEC1302] gi|306907595|gb|EFN38098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W] gi|312288051|gb|EFR15955.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75] gi|312946640|gb|ADR27467.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O83:H1 str. NRG 857C] gi|315061285|gb|ADT75612.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli W] gi|320193299|gb|EFW67937.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|323378135|gb|ADX50403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli KO11] gi|330911850|gb|EGH40360.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331063904|gb|EGI35815.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA271] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|110642224|ref|YP_669954.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 536] gi|191170002|ref|ZP_03031556.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|227887061|ref|ZP_04004866.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972] gi|110343816|gb|ABG70053.1| penicillin-binding protein 6B precursor [Escherichia coli 536] gi|190909518|gb|EDV69103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|227835411|gb|EEJ45877.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972] gi|307554080|gb|ADN46855.1| DD-carboxypeptidase [Escherichia coli ABU 83972] gi|323956179|gb|EGB51930.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|327253142|gb|EGE64796.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli STEC_7v] Length = 388 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T K ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVKILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + I+ T++E + + K + +D +++T Sbjct: 301 YGDKETIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|209964479|ref|YP_002297394.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] gi|209957945|gb|ACI98581.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] Length = 403 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 143/268 (53%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R+ I + ++ I P + L+DT+TG V+ E D +S++K+MT Sbjct: 29 RRLAAIAVLTLVGTILPAQAATIDTIAREAILIDTSTGTVLFEKNADERTPTSSMSKVMT 88 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+VF ++ + L + +S+NA S + G+++ +++ ++ +I++S ND + Sbjct: 89 MYMVFDRIRSGRLSLDDTLPVSENAWRMQGSKMWVELGNSIRVEDLIRGVIIQSGNDACI 148 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L +E F M + +G++A++FMNA G HY+TARD+A L+ R+ DF Sbjct: 149 VLAEGLSGSEPAFAADMTRKAHEMGMTASNFMNASGWPDPDHYSTARDLATLAQRLIKDF 208 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+++HY+ K G K N N + +G DG+KTG T ++G+ ++A+ + + L+ Sbjct: 209 PEFLHYYSEKEFTYHGIKQGNRNPLLYRNMGVDGLKTGHTESAGYGLIATGERDGRRLVL 268 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTD 269 V+ G + R SA LL G+ T Sbjct: 269 VVNGLPNMQARADESARLLEWGWREFTS 296 >gi|307138677|ref|ZP_07498033.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H736] gi|331642633|ref|ZP_08343768.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H736] gi|331039431|gb|EGI11651.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H736] Length = 388 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|323936908|gb|EGB33191.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] Length = 388 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKNLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|188492414|ref|ZP_02999684.1| penicillin binding protein 6B [Escherichia coli 53638] gi|188487613|gb|EDU62716.1| penicillin binding protein 6B [Escherichia coli 53638] Length = 388 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|218690072|ref|YP_002398284.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ED1a] gi|218427636|emb|CAR08547.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli ED1a] Length = 388 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|157155424|ref|YP_001463361.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E24377A] gi|157077454|gb|ABV17162.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|323961778|gb|EGB57379.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] Length = 388 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|89108830|ref|AP_002610.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|162135904|ref|NP_416514.4| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. MG1655] gi|170081640|ref|YP_001730960.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. DH10B] gi|238901200|ref|YP_002926996.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BW2952] gi|3183515|sp|P33013|DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags: Precursor gi|85675189|dbj|BAA15838.2| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|87082022|gb|AAC75071.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. MG1655] gi|169889475|gb|ACB03182.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli str. K-12 substr. DH10B] gi|238860731|gb|ACR62729.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BW2952] gi|260448889|gb|ACX39311.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] gi|315136643|dbj|BAJ43802.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli DH1] gi|332343793|gb|AEE57127.1| D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli UMNK88] Length = 388 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|170019661|ref|YP_001724615.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ATCC 8739] gi|169754589|gb|ACA77288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] Length = 388 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDNTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|191167708|ref|ZP_03029516.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190902221|gb|EDV61962.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|323948386|gb|EGB44371.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] Length = 388 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|119896472|ref|YP_931685.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] gi|119668885|emb|CAL92798.1| probable D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72] Length = 376 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 1/251 (0%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L+D NTG V+A N PD PASLTKLMTAY+ FS LK L P+ + Sbjct: 23 APALAAKAWVLVDHNTGQVLAANDPDARIEPASLTKLMTAYLTFSALKAGTIALDQPVPV 82 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A S + +T+ ++ +IV+S ND VA+AE + TE+ F MN + Sbjct: 83 SERAWRQEGSRMFIEPQKPVTVQELIRGVIVQSGNDACVALAELIAGTEEAFAAMMNREA 142 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-YFQIKGLEIKGKKYP 201 + LG+S THF N+ G+ YTTA+D+A+L+ I DFP Y + +K P Sbjct: 143 QRLGMSNTHFTNSTGLPDPQLYTTAKDLALLASAIIRDFPDYYASLYSLKEYRYNNITQP 202 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + DGMKTG T ++G+ +++SA++G + L++V+LGA R + S LL+ Sbjct: 203 NRNRLLWMDSTVDGMKTGHTSSAGYCLISSALRGPRRLVSVVLGAESDTVRAQESLKLLN 262 Query: 262 MGFYNKTDRKK 272 GF K Sbjct: 263 FGFQFFDTVKL 273 >gi|218699400|ref|YP_002407029.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI39] gi|218369386|emb|CAR17143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli IAI39] Length = 388 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLTIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|302879284|ref|YP_003847848.1| Beta-lactamase [Gallionella capsiferriformans ES-2] gi|302582073|gb|ADL56084.1| Beta-lactamase [Gallionella capsiferriformans ES-2] Length = 381 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 3/275 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+ FL + + + Y L D ++ ++ PASLTKL Sbjct: 1 MKSFLFFAGLLLSFTSYALQQPEPPVLASKSYLLYDFSSNQILVNQNGHARLEPASLTKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 MTAY+ FS +K+ K L +T+ +A + S K G ++T+D L LIV+S N Sbjct: 61 MTAYLTFSAIKQDKLKLDQTLTVPVDAPRNSSGESRMLLKPGQSVTVDELLHGLIVQSGN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A +A + +E FV+ MN ++ +G+ THF+N G+ HY++A DMAIL+ + Sbjct: 121 DAANTLAVQISGSEATFVEQMNKEAQRMGMKNTHFVNPVGMPNAQHYSSAYDMAILAAAL 180 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D+P++ F ++ N N + ADG+KTG T +GF +V SA + + Sbjct: 181 IRDYPEHYPLFGLRDYTFNNVTQANRNRLLWLDPYADGLKTGHTETAGFCLVGSAKRDKR 240 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LI+V+LGA N R S LL+ GF + + Sbjct: 241 RLISVVLGADSDNQRASESQKLLNYGFQSFDAVRL 275 >gi|256022304|ref|ZP_05436169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia sp. 4_1_40B] Length = 388 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAESWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + ++ +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLNGKELT 339 >gi|218695635|ref|YP_002403302.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 55989] gi|218352367|emb|CAU98141.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli 55989] Length = 388 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAVNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|15802489|ref|NP_288515.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 EDL933] gi|12516188|gb|AAG57069.1|AE005426_11 penicillin binding protein 6b [Escherichia coli O157:H7 str. EDL933] Length = 390 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFIFNLSXGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|15832066|ref|NP_310839.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. Sakai] gi|168764096|ref|ZP_02789103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|168777102|ref|ZP_02802109.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|168784009|ref|ZP_02809016.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|188025184|ref|ZP_02997384.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189402596|ref|ZP_03006773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189403423|ref|ZP_03007084.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189406210|ref|ZP_03008107.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|208810754|ref|ZP_03252630.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208816718|ref|ZP_03257838.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208818499|ref|ZP_03258819.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209397891|ref|YP_002271183.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209447203|ref|YP_002274288.1| penicillin-binding protein 6b [Stx2-converting phage 1717] gi|217329693|ref|ZP_03445772.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|261256444|ref|ZP_05948977.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. FRIK966] gi|291283247|ref|YP_003500065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7 str. CB9615] gi|293410371|ref|ZP_06653947.1| dacD [Escherichia coli B354] gi|13362280|dbj|BAB36235.1| penicillin binding protein 6b [Escherichia coli O157:H7 str. Sakai] gi|187767572|gb|EDU31416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188014404|gb|EDU52526.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|188998746|gb|EDU67732.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189354737|gb|EDU73156.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189360801|gb|EDU79220.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189365830|gb|EDU84246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189375987|gb|EDU94403.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|208725270|gb|EDZ74977.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208731061|gb|EDZ79750.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208738622|gb|EDZ86304.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209159291|gb|ACI36724.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209361182|gb|ACI43175.1| penicillin-binding protein 6b [Escherichia coli O157:H7] gi|209748254|gb|ACI72434.1| penicillin binding protein 6b [Escherichia coli] gi|209748256|gb|ACI72435.1| penicillin binding protein 6b [Escherichia coli] gi|209748258|gb|ACI72436.1| penicillin binding protein 6b [Escherichia coli] gi|217317461|gb|EEC25890.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|284922011|emb|CBG35089.1| penicillin-binding protein 6B [Escherichia coli 042] gi|290763120|gb|ADD57081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7 str. CB9615] gi|291470839|gb|EFF13323.1| dacD [Escherichia coli B354] Length = 390 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|261367341|ref|ZP_05980224.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile DSM 15176] gi|282570101|gb|EFB75636.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile DSM 15176] Length = 405 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 158/333 (47%), Gaps = 35/333 (10%) Query: 1 MRQFLVIIAMAMLSNIFP-FLSIAETNKL--------------------------PYYTL 33 M++ V I + + +F F + AE + L Sbjct: 1 MKKRTVTILLCLALVLFSVFRAYAEADSAVTVPAEVTPQAQTITPAGTSEFDVPCEAAIL 60 Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D ++G V+ E D AS+TK+MT + F L+ +K L + +S++A S Sbjct: 61 VDEDSGTVLYEKNADEQRPIASITKVMTLLLTFQALESRKISLEDNVPVSEHAYSMGGSQ 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G MTL++ LK + V SAND AVA+AE + +E FVQ MN T+ LG+++THF Sbjct: 121 IWLEPGEQMTLNDMLKAICVSSANDAAVAVAEFVGGSEPAFVQMMNETAAQLGMTSTHFE 180 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFL 211 NA G+ Q GH ++ARD+AI+S + + Y I ++ + NTN + ++ Sbjct: 181 NACGLDQEGHLSSARDVAIMSREMLLHHTEVRDYCSIWTDTLRNGATQLVNTNKLLKSYN 240 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G G+KTG T +G I ASA + LIAV+LG+ R + + +LL GF N + Sbjct: 241 GITGLKTGTTSKAGVCISASAERNGLRLIAVVLGSASGKERFQAATALLDYGFANFEN-- 298 Query: 272 KINYIIKDFYQQNLS---NEVPNISEEVCTTQK 301 I + D Q + ++ E T QK Sbjct: 299 -ITAELPDDAPQTIPVTRGTADAVALEYDTPQK 330 >gi|157146509|ref|YP_001453828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter koseri ATCC BAA-895] gi|157083714|gb|ABV13392.1| hypothetical protein CKO_02270 [Citrobacter koseri ATCC BAA-895] Length = 413 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L P L AE P + L+D ++G V+AE D +PASLTK+ Sbjct: 24 LAAGSALLFLFAPTLQAAEQTTAPPSVDARAWILMDYSSGKVLAEGNADEKLDPASLTKI 83 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 84 MTSYVVGQALKAGKIQLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVII 143 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 144 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 203 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 204 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 263 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LG R S LL+ GF I Sbjct: 264 TQGDMRLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 304 >gi|320177929|gb|EFW52913.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] Length = 388 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 162/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++AS + G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTVDGKELT 339 >gi|260844620|ref|YP_003222398.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|257759767|dbj|BAI31264.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] Length = 388 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 162/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFTAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G LIAVI+GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|193062785|ref|ZP_03043878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|331683696|ref|ZP_08384292.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H299] gi|192931428|gb|EDV84029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|331078648|gb|EGI49850.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H299] Length = 388 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 162/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G LIAVI+GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|253773059|ref|YP_003035890.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161999|ref|YP_003045107.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B str. REL606] gi|297519533|ref|ZP_06937919.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli OP50] gi|242377656|emb|CAQ32416.1| DD-carboxypeptidase, penicillin-binding protein 6b [Escherichia coli BL21(DE3)] gi|253324103|gb|ACT28705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973900|gb|ACT39571.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli B str. REL606] gi|253978094|gb|ACT43764.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli BL21(DE3)] Length = 388 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + ++ +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLNGKELT 339 >gi|292490707|ref|YP_003526146.1| beta-lactamase [Nitrosococcus halophilus Nc4] gi|291579302|gb|ADE13759.1| Beta-lactamase [Nitrosococcus halophilus Nc4] Length = 382 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 9/279 (3%) Query: 1 MRQFLVIIAMAMLSNIF--------PF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M+ + + L +F P + A + Y L D TG V+AE D Sbjct: 1 MKSLGSLFSWYWLLLLFMGGTVWGQPLPIPAAPSLSAKAYILQDFATGQVLAEAQADQRV 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TKLMTAYVVF+ LK L + IS+ A S + + S ++++ L+ + Sbjct: 61 EPASITKLMTAYVVFAELKRGNIHLEDKVLISEKAWRTGGSRTFIEVDSRVSVETLLQGM 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I++S ND +VA+AE + TE+ F MN ++ LG++ +HF+N+ G+ HY T RD+A Sbjct: 121 IIQSGNDASVALAEYVGGTEEIFATLMNQQAQALGMTGSHFVNSTGLPHENHYMTTRDIA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 L+ + DFP+Y ++ + N N + DG KTG+T A+G+ +V+S Sbjct: 181 TLARALIRDFPEYYGWYSEQEFTYNNITQYNRNVLLRRDPSVDGCKTGYTEAAGYCLVSS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 A++ LIAV++G R + S +LL+ GF R Sbjct: 241 AMREGMRLIAVVMGTKGPKIRARESLALLNYGFRFYDTR 279 >gi|260855992|ref|YP_003229883.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257754641|dbj|BAI26143.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] Length = 388 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I D P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 301 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|332278836|ref|ZP_08391249.1| penicillin-binding protein 6B [Shigella sp. D9] gi|332101188|gb|EGJ04534.1| penicillin-binding protein 6B [Shigella sp. D9] Length = 390 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|170683658|ref|YP_001743130.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SMS-3-5] gi|331647659|ref|ZP_08348751.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M605] gi|331663510|ref|ZP_08364420.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA143] gi|170521376|gb|ACB19554.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|281179111|dbj|BAI55441.1| penicillin binding protein 6 [Escherichia coli SE15] gi|323161927|gb|EFZ47801.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli E128010] gi|323187689|gb|EFZ72990.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli RN587/1] gi|331043383|gb|EGI15521.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M605] gi|331059309|gb|EGI31286.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA143] Length = 390 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|26248385|ref|NP_754425.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli CFT073] gi|237704469|ref|ZP_04534950.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA] gi|26108789|gb|AAN80992.1|AE016762_245 Penicillin-binding protein 6B precursor [Escherichia coli CFT073] gi|226900835|gb|EEH87094.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA] Length = 390 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|300113196|ref|YP_003759771.1| beta-lactamase [Nitrosococcus watsonii C-113] gi|299539133|gb|ADJ27450.1| Beta-lactamase [Nitrosococcus watsonii C-113] Length = 389 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + + Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L Sbjct: 36 IPAPPSLSAKAYLLQDFATGRVLAEHQADERIEPASITKLMTAYVVFKELKQGRIHLADE 95 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + IS+ A S + + + + ++ +K +I++S ND +VA+AE + TE+ F MN Sbjct: 96 VLISEKAWRTGGSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEYVGGTEEIFAALMN 155 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG++ +HF+N+ G+ HY TARD+A L I DFP+Y ++ + G Sbjct: 156 QQAQLLGMTGSHFVNSTGLPHENHYMTARDIATLGRAIILDFPKYYDWYSEQAFTYNGIT 215 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + DG KTG T ++G+ + +SA++ LIAV++G R + S +L Sbjct: 216 QYNRNLLLRRDSSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRMQESLAL 275 Query: 260 LSMGFYNKTDR 270 L+ GF R Sbjct: 276 LNYGFRFYDTR 286 >gi|320668144|gb|EFX35013.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 388 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG + N Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQIFTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 339 >gi|261855867|ref|YP_003263150.1| beta-lactamase [Halothiobacillus neapolitanus c2] gi|261836336|gb|ACX96103.1| Beta-lactamase [Halothiobacillus neapolitanus c2] Length = 425 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 97/273 (35%), Positives = 138/273 (50%), Gaps = 4/273 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A Y LLD NTG +I + D P PAS+TKLMT+Y+VFS LK + +TI Sbjct: 74 APVLSARSYVLLDANTGQIIVQKNADEPVPPASITKLMTSYLVFSALKSGNIHMDDMVTI 133 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 SK A E S + G +++ N L +IV+S ND A A+AE + E+ FV MN T+ Sbjct: 134 SKKAWEMQGSKMFIEVGKQVSVKNLLMGMIVQSGNDAATALAEYVGGNEQSFVSLMNATA 193 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-YFQIKGLEIKGKKYP 201 K LG++ TH+ + G GH +ARD++ L + FP Y H +F+ K G K Sbjct: 194 KKLGMTKTHYEDPTGWPADGHVMSARDISTLFNALVKHFPNYYHEFFRQKVFTWNGIKQY 253 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + DG KTG T +GF + S Q LIAV+LG + RN + +LL+ Sbjct: 254 NREKLLFRDNWVDGGKTGHTEEAGFCLATSGQQNGMRLIAVVLGTESDDARNNEAEALLN 313 Query: 262 MGFY---NKTDRKKINYIIKDFYQQNLSNEVPN 291 GF N R+ + + +++VP Sbjct: 314 YGFRFYENVPVRQAKQVLATPDVFKGAADQVPV 346 >gi|331673546|ref|ZP_08374309.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA280] gi|331068819|gb|EGI40211.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA280] Length = 390 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN + L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAGKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LLS G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLSWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|209919474|ref|YP_002293558.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11] gi|209912733|dbj|BAG77807.1| penicillin binding protein 6 [Escherichia coli SE11] Length = 390 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|260868661|ref|YP_003235063.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|257765017|dbj|BAI36512.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] Length = 388 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASAI G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 241 FNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + ++ +++T Sbjct: 301 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLNGKELT 339 >gi|110635386|ref|YP_675594.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110286370|gb|ABG64429.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 382 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 191/313 (61%), Gaps = 9/313 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 RQ +++ P L+ Y L+D TG V+A+ W PASLTKLMT Sbjct: 21 RQVILLAVFCYSMLHLPALAGP-------YVLVDVGTGRVLAQENAFQRWYPASLTKLMT 73 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYVVF L+ + + +P+ IS+NA++ PPS + GS +TLDNALK+L+V SANDIA Sbjct: 74 AYVVFRELESGRLQINSPVRISQNAAKEPPSKMGYSVGSVLTLDNALKILMVLSANDIAT 133 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AES+ +E+ FV MN ++ LG++ +HF+NAHG+ +TTARD+AIL+ ++ F Sbjct: 134 ALAESVAGSEEAFVARMNAEAQRLGMTDSHFINAHGLPGPSQFTTARDLAILARALRAQF 193 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY YF I+G+ NTN+ +G F GADGMKTG+ C+SGFN+VA+A +G+++L A Sbjct: 194 PQYASYFSIEGIRNGKSVKENTNFLIGRFDGADGMKTGYICSSGFNLVATATRGERTLAA 253 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA + R +++A LL+ GF +T I+ + ++ +V +I E+C+ + Sbjct: 254 VVLGAQSQVQRAEIAADLLTRGF--ETQGLGAPSIVDLRPSEQVTEDVADIRPEICSEEA 311 Query: 302 EIINYNTQMKEAK 314 + E + Sbjct: 312 VAKRMKERDDEGR 324 >gi|331653434|ref|ZP_08354435.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M718] gi|331048283|gb|EGI20359.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli M718] Length = 390 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LI+V++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLISVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|293415304|ref|ZP_06657947.1| dacD [Escherichia coli B185] gi|291432952|gb|EFF05931.1| dacD [Escherichia coli B185] gi|323168855|gb|EFZ54535.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella sonnei 53G] Length = 390 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|90022977|ref|YP_528804.1| penicillin-binding protein 6 [Saccharophagus degradans 2-40] gi|89952577|gb|ABD82592.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Saccharophagus degradans 2-40] Length = 393 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 18/327 (5%) Query: 1 MRQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 MR F+V + + +F + Y L+D +TG VI E+ D PASLT Sbjct: 5 MRSFVVCLLATICVPVFAAQVIVPAPPELSAKAYLLIDADTGKVIVESNADEVMEPASLT 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLI 112 K+MT+Y+V ++ + + +S +A S S + + + L+ +I Sbjct: 65 KMMTSYIVSEEIESGRLTEDALVLVSDDAWRRGGSASGSSTMFLDPRSEVRVIDLLRGVI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND ++A+A+ + E F MN ++ LG+++T+F NA G GH TTARD+AI Sbjct: 125 IQSGNDASIALAQHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTARDLAI 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L+ + D P++ + K + G PN N + DGMKTG T ++G+ +VASA Sbjct: 185 LARALVNDHPEHYALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCLVASA 244 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 Q D LI+V+LG + R + S LLS GF K + N + + Sbjct: 245 KQDDMRLISVVLGTKSDSARTQDSQKLLSYGFRYY----------KTYTLYNEGEAISDA 294 Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESH 319 T K + N+ ++ + +H Sbjct: 295 RVWKGLTDKVSLTVNSDIEVTIPRGAH 321 >gi|331677915|ref|ZP_08378590.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H591] gi|331074375|gb|EGI45695.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli H591] Length = 390 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|293446369|ref|ZP_06662791.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088] gi|291323199|gb|EFE62627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088] gi|324119040|gb|EGC12929.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] Length = 390 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|257092335|ref|YP_003165976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044859|gb|ACV34047.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 378 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 1/247 (0%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 L + L++ +G +A PD +PASLTKLMTAY+ F+ LK+ + P Sbjct: 24 LPTPPALAAKSWLLIEAASGQELAAQAPDQRLDPASLTKLMTAYLSFAALKQGTLKVDQP 83 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +S+ A + S + G+ + +++ LK +IV+S ND VA+AE++ E+ F Q MN Sbjct: 84 VPVSQKAWKTGGSRMFIQVGTQVKVEDLLKGMIVQSGNDACVALAEAIAGDEENFAQMMN 143 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGK 198 ++ LG+ + F N+ G+ HYTTARD+A L+ + DFP +Y Y+ +K Sbjct: 144 REAQRLGMKGSSFRNSSGLPDPQHYTTARDLATLAGALIRDFPDEYAKYYSLKEFRYNNI 203 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 PN N + DG+KTG T A+G+ +V+SA +G + L++V+LGA + R + S Sbjct: 204 TQPNRNRLLWIDPTVDGLKTGHTEAAGYCLVSSAKRGPRRLLSVVLGAPSDSVRAQESLK 263 Query: 259 LLSMGFY 265 LL+ GF Sbjct: 264 LLNYGFQ 270 >gi|331005765|ref|ZP_08329124.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC1989] gi|330420402|gb|EGG94709.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC1989] Length = 386 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 1/270 (0%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F++ ++ MLS P + A Y L+DTNTG V+ E D PAS+TK+MT+ Sbjct: 10 FILSCSVVMLSYARPVIIPAPPQLAATAYFLMDTNTGRVLVEKNADMQLPPASMTKMMTS 69 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+V S ++ +TIS A + S ++G+ +++ + L+ +I++S ND ++A Sbjct: 70 YIVSSEIERGSINPDDLVTISVKAWKKGGSKMFVREGTQVSIKDLLRGVIIQSGNDASIA 129 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN + LG++ T F NA G GH ++ RD+AIL + DFP Sbjct: 130 LAEHIAGSEAAFADIMNQQAALLGMTNTVFKNATGWPADGHISSVRDLAILGQALIKDFP 189 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 ++ + K G PN N + T DG+KTG T +GF + AS+ + L++V Sbjct: 190 EHYKLYSEKYFTYNGINQPNRNKLLFTDKSVDGIKTGHTEEAGFGLTASSERDGMRLVSV 249 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + G + R S LLS GF K Sbjct: 250 VTGTRSESARAAESQKLLSYGFRYYYTHKL 279 >gi|29654563|ref|NP_820255.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii RSA 493] gi|154706869|ref|YP_001424698.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii Dugway 5J108-111] gi|161830325|ref|YP_001597113.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331] gi|29541831|gb|AAO90769.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii RSA 493] gi|154356155|gb|ABS77617.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii Dugway 5J108-111] gi|161762192|gb|ABX77834.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331] Length = 418 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 64 DVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKA 123 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG Sbjct: 124 WRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLG 183 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N Sbjct: 184 MKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRL 243 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 244 LWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGFRF 303 Query: 267 KTDRKKIN 274 R+ + Sbjct: 304 YQTRQLFD 311 >gi|165918943|ref|ZP_02219029.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334] gi|165917340|gb|EDR35944.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334] Length = 384 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 30 DVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKA 89 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG Sbjct: 90 WRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLG 149 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N Sbjct: 150 MKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRL 209 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 210 LWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGFRF 269 Query: 267 KTDRKKIN 274 R+ + Sbjct: 270 YQTRQLFD 277 >gi|77166090|ref|YP_344615.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosococcus oceani ATCC 19707] gi|254435823|ref|ZP_05049330.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani AFC27] gi|76884404|gb|ABA59085.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosococcus oceani ATCC 19707] gi|207088934|gb|EDZ66206.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani AFC27] Length = 382 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + + Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L Sbjct: 29 IPAPPSLSAKAYLLQDFATGRVLAESQADERIEPASITKLMTAYVVFKELKQGRIHLADE 88 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + IS+ A S + + + + ++ +K +I++S ND +VA+AE + TE+ F MN Sbjct: 89 VLISEKAWRTGGSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEHVGGTEEIFAALMN 148 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG++ +HF+N+ G+ HY TARD+A L I DFP+Y ++ + G Sbjct: 149 QQAQLLGMTGSHFVNSTGLPHSNHYMTARDIATLGRAIIRDFPKYYSWYSEQAFTYNGIT 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + DG KTG T ++G+ + +SA++ LIAV++G R + S +L Sbjct: 209 QYNRNLLLRRDSSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRAQESLAL 268 Query: 260 LSMGFYNKTDR 270 L+ GF R Sbjct: 269 LNYGFRFYDTR 279 >gi|312973749|ref|ZP_07787921.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70] gi|310332344|gb|EFP99579.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70] Length = 390 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L+ THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLNDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|260597233|ref|YP_003209804.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter turicensis z3032] gi|260216410|emb|CBA29490.1| D-alanyl-D-alanine carboxypeptidase dacC [Cronobacter turicensis z3032] Length = 403 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 146/285 (51%), Gaps = 13/285 (4%) Query: 2 RQFLVIIAMAMLSNIF------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 R+ L + +L ++ P +A + L+D ++G V+AE D +PAS Sbjct: 10 RRVLALSGAFLLMSLSTAHAADPIAPVAPDVDARAWILMDYHSGKVLAEGNADEKLDPAS 69 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTKLMT+YVV LK K L +T+ K+A S K G +++ + K Sbjct: 70 LTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLNK 129 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +I++S ND ++AIA+ + ++ FV MN +K LGL++T F HG+ G ++TARD Sbjct: 130 GVIIQSGNDASIAIADYVAGSQDAFVGLMNGYAKRLGLTSTTFKTVHGLDAPGQFSTARD 189 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA+L + D P + K + PN N + + + DGMKTG T +G+N+ Sbjct: 190 MALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKTGTTAGAGYNL 249 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 VASA QGD LI+V+LGA R + S LL+ GF I Sbjct: 250 VASATQGDMRLISVVLGAKTDGIRFRESEKLLTWGFRFFETVTPI 294 >gi|254483505|ref|ZP_05096732.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma proteobacterium HTCC2148] gi|214036226|gb|EEB76906.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma proteobacterium HTCC2148] Length = 387 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 147/277 (53%), Gaps = 8/277 (2%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M +F + + +A+ + + Y L+D N+G ++AE D P PASLT Sbjct: 1 MIRFSLALFLALSIFGAQAATIVPSPPQIAAKAYLLVDANSGEILAEKNADMPLPPASLT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLI 112 K+MT+YV+ + + E + L+ +T+S+NA P S + G +++D+ + ++ Sbjct: 61 KMMTSYVLATEIDEGRVALSDMVTVSENAWSQNPLFAGSSLMWIEPGKEVSIDDLQRGIV 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND VA+AE L +E F + MN+ ++ LG+ T+++N+HG+ H TTARD+A Sbjct: 121 ISSGNDATVAVAEHLAGSEAVFAEMMNSHAEKLGMIDTYYVNSHGLPDPDHVTTARDLAT 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 LS + + P++ ++ + K N N + DG+KTG+T +G+ +VASA Sbjct: 181 LSKAMIIEHPEHYAVYKEREFTYNNIKQYNRNSLLAEDPTVDGLKTGYTQEAGYCLVASA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + LI+V+LGA R + SLL+ GF Sbjct: 241 ERRGMRLISVVLGASSTRARKNETRSLLNYGFRFFET 277 >gi|74312552|ref|YP_310971.1| D-alanyl-D-alanine carboxypeptidase [Shigella sonnei Ss046] gi|73856029|gb|AAZ88736.1| penicillin binding protein 6b [Shigella sonnei Ss046] Length = 390 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+ S I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVFSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|28875449|gb|AAO59939.1| DacD [uncultured bacterium] Length = 421 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 157/339 (46%), Gaps = 35/339 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A + + P + + P + L+D TG ++ N Sbjct: 34 LKRRLFIAASLLTMSFSPAWASDAVSFAPQPPAITAGAWVLMDYTTGQILTAGNEHQQRN 93 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + K+ T +T+ ++A S K+G +++ + Sbjct: 94 PASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 153 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MNN ++ L L THF HG+ G +++ Sbjct: 154 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSS 213 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P + H + K L G N N + + DG+KTG T +G Sbjct: 214 AYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 273 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KIN 274 FN++ASA+ G + LIAV++GA R + LL G +N + +I Sbjct: 274 FNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQHNFDTVQVLRSGKQVGTERIW 333 Query: 275 YIIK---------DFYQQNLSNEVPNISEEVCTTQKEII 304 Y K DF+ EVPNI + +KE++ Sbjct: 334 YGDKEKISLGTEQDFWMALPKAEVPNIKAKYVLDKKELV 372 >gi|315618015|gb|EFU98607.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 3431] Length = 390 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVKMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++A A+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIALAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTVDGKELT 341 >gi|212212357|ref|YP_002303293.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuG_Q212] gi|212010767|gb|ACJ18148.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuG_Q212] Length = 418 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 64 DVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSIKA 123 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG Sbjct: 124 WRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLG 183 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N Sbjct: 184 MKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRL 243 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 244 LWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGFRF 303 Query: 267 KTDRKKIN 274 R+ + Sbjct: 304 YQTRQLFD 311 >gi|323152399|gb|EFZ38687.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli EPECa14] Length = 390 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I D P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI T++E + + K + +D +++T Sbjct: 303 YGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 341 >gi|164685962|ref|ZP_01946170.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat Q177'] gi|212218675|ref|YP_002305462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuK_Q154] gi|164601484|gb|EAX33225.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat Q177'] gi|212012937|gb|ACJ20317.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii CbuK_Q154] Length = 418 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 135/248 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S A Sbjct: 64 DVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKA 123 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+ LG Sbjct: 124 WRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLG 183 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +H++++ G+ + HY+T DMA L+ I DFP+Y HYF K L K PN N Sbjct: 184 MKNSHYVDSTGLPRPDHYSTPYDMAALTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRL 243 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF Sbjct: 244 LWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGFRF 303 Query: 267 KTDRKKIN 274 R+ + Sbjct: 304 YQTRQLFD 311 >gi|319944900|ref|ZP_08019162.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC 51599] gi|319741470|gb|EFV93895.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC 51599] Length = 411 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 17/285 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 +RQ L + +A + +++A++ P + L D +T V+ PD PAS Sbjct: 21 LRQRLSALMLATSLGLAAPVAMAQSLPPPDIGGRSWFLFDVSTNTVLYSQAPDERVEPAS 80 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMTAYVVF L++ + T +S+ A + S T++ L LI++S Sbjct: 81 LTKLMTAYVVFEALRDGTLNMDTRPPVSQAAYKAIGSRMFVDPRKPATVEELLHGLIIQS 140 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A+ +AE++ +E+ F Q MN ++ +G+ +HF+NA G+ HY+TARDMA+L+ Sbjct: 141 GNDAAIILAEAVSGSEEAFAQQMNAEARRIGMKNSHFVNASGLPAPEHYSTARDMALLAT 200 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI +FP Y + K G + PN N + DGMKTG T A+G+ +VASA + Sbjct: 201 RIIKEFPDYYRMYSEKEYTFNGVRQPNRNRLLYIDPSVDGMKTGHTDAAGYCLVASAHRE 260 Query: 236 D------------QSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + +++V++GA TR S LL+ GF N Sbjct: 261 QRNAADPNGSPFSRRILSVLMGATTDATRATESQKLLNYGFQNFE 305 >gi|323177151|gb|EFZ62741.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1180] Length = 390 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L+I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASAI G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++E + + K + ++ +++T Sbjct: 303 YGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLNGKELT 341 >gi|194735164|ref|YP_002113956.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195874051|ref|ZP_02700341.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197250312|ref|YP_002145817.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197300887|ref|ZP_02661864.2| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|198246085|ref|YP_002214828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205357020|ref|ZP_02344188.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358377|ref|ZP_02655826.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359776|ref|ZP_02831975.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194710666|gb|ACF89887.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630952|gb|EDX49538.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214015|gb|ACH51412.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290207|gb|EDY29564.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940601|gb|ACH77934.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324544|gb|EDZ12383.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334736|gb|EDZ21500.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343236|gb|EDZ30000.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 426 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 37 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 96 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 97 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 156 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 157 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 216 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 217 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 276 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 277 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 317 >gi|254784818|ref|YP_003072246.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901] gi|237684996|gb|ACR12260.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901] Length = 390 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 161/338 (47%), Gaps = 12/338 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L I+ M +N + A Y L+D +TG VI E+ D PASLTK+MT+Y Sbjct: 15 LFILVTPMAANASQVIIPAPPQLAATAYLLIDADTGKVIVEHNADEQLPPASLTKMMTSY 74 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118 +V + + T + +S +A S + S + + + L+ +I++S ND Sbjct: 75 IVSEEIYAGRLQETDLVRVSDDAWRRGGAKSGSSTMFLEARSEVPVIDMLRGVIIQSGND 134 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 ++A+A+ + +E+ F + MN ++ LG++ +HF NA G GH TTARD+AIL+ + Sbjct: 135 ASIALAQHIAGSEEAFAEIMNQQAQLLGMTNSHFRNATGWPAEGHLTTARDLAILAKALI 194 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P++ + K + G PN N + T DG+KTG T A+G+ +VASA + Sbjct: 195 NDHPKHYALYSEKHFKHNGISQPNRNKLLFTDNTVDGIKTGHTEAAGYCLVASAKRDGMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294 LI+V++GA N R S LL+ GF K + + + + V I Sbjct: 255 LISVVMGAKSENARAAESKKLLAYGFRYYQTHKLYSAGDELGSARVWGGDPKELVLTIDH 314 Query: 295 EVCTTQKE--IINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ T N ++ + E+ + + LK Sbjct: 315 DILATIPRGGAKNVKAAIETNANIEAPIAKHQPLGKLK 352 >gi|254281581|ref|ZP_04956549.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR51-B] gi|219677784|gb|EED34133.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR51-B] Length = 381 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 5/278 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M +F++++ + + + Y L+D ++G V+ E+ D PASLTK+M Sbjct: 1 MLRFVILMMFSTSVLASSVVPAPPSIAADGYLLMDFHSGEVLVEHNADDVLPPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKS 115 TAY++ + + L+ + +S+ A P S + G T+T+ K +++ S Sbjct: 61 TAYILAEEIDAGRLSLSDEVPVSRTAWSQNPTFRGSSLMWIEPGKTVTVGELEKGIVISS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VAIAE + +E+ F MN ++ LG++ATH++N+HG+ H T+ARD+A L+ Sbjct: 121 GNDATVAIAEHIAGSEEAFAGMMNRYAEILGMTATHYVNSHGLPNSAHVTSARDLATLAA 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 I D P+ ++ N N + DG+KTG+T +G+ +VASA + Sbjct: 181 AIIRDHPERYKVYKQLSFTYNDITQYNRNHLLRDDPSVDGLKTGYTSVAGYGLVASAERD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V++G+ +R + SLL+ GF + + Sbjct: 241 GMRLISVVMGSNSTRSRKAETRSLLNYGFRFYETVQPV 278 >gi|168240742|ref|ZP_02665674.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447475|ref|YP_002044893.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194405779|gb|ACF65998.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340371|gb|EDZ27135.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 400 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D ++G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYSSGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|237730821|ref|ZP_04561302.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp. 30_2] gi|226906360|gb|EEH92278.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp. 30_2] Length = 407 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 15/286 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 +R F A+L + P + AE P + L+D +G V+AE D +PA Sbjct: 15 LRSF--AAGSALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPA 72 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNAL 108 SLTK+MT+YVV LK K L +T+ K+A S K G + + + Sbjct: 73 SLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQVAVSDLN 132 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TAR Sbjct: 133 KGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFSTAR 192 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFN 227 DMA+L + D P+ + K + PN N + T L DGMKTG T +G+N Sbjct: 193 DMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGMKTGTTAGAGYN 252 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +VASA QGD LI+V+LGA R S LL+ GF I Sbjct: 253 LVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|88800720|ref|ZP_01116279.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297] gi|88776584|gb|EAR07800.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297] Length = 394 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 4/265 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +I A + P + A Y L+D TG V+ + PASLTKLMT+Y+ Sbjct: 17 FLIGITATCALAEPIIPAAPQLAATSYILMDAETGQVLVAHNEHEQMPPASLTKLMTSYI 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + E + LT +SK A + P S + G +T+++ L+ +I+ S ND +VA+A Sbjct: 77 AEREILEGRLELTDETLVSKKAWQMPGSRMFIEVGDLVTIEDLLRGVIIVSGNDASVALA 136 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDF 181 E + TE F Q MN ++NLG+ THF NA G+ HY++A D+A+LS + D Sbjct: 137 EHIAGTEDLFAQLMNKYAENLGMINTHFSNASGLPPENGQEHYSSAYDLALLSQALIYDN 196 Query: 182 PQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 ++ + + + PN N +GT DG+KTG T +G+ + ASA + LI Sbjct: 197 AEFYPLYAERSFKYGPVSAQPNRNRLLGTNPDVDGLKTGHTEEAGYCLAASAERDGMRLI 256 Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265 +V++G + R + + LL+ GF Sbjct: 257 SVVMGTRSEDARAQETQKLLTYGFR 281 >gi|291085651|ref|ZP_06353607.2| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291070535|gb|EFE08644.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 413 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 15/286 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54 +R F A+L + P + AE P + L+D +G V+AE D +PA Sbjct: 21 LRSF--AAGSALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPA 78 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNAL 108 SLTK+MT+YVV LK K L +T+ K+A S K G + + + Sbjct: 79 SLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQVAVSDLN 138 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TAR Sbjct: 139 KGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFSTAR 198 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFN 227 DMA+L + D P+ + K + PN N + T L DGMKTG T +G+N Sbjct: 199 DMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGMKTGTTAGAGYN 258 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +VASA QGD LI+V+LGA R S LL+ GF I Sbjct: 259 LVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 304 >gi|222087386|ref|YP_002545923.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221724834|gb|ACM27990.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 388 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 128/325 (39%), Positives = 194/325 (59%), Gaps = 7/325 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L ++ MA +++ FLS AE + L+D NTG V+ W PASLTKLMTAYV Sbjct: 12 LRLVPMAAAASML-FLSTAEVADANPHVLVDANTGRVLDHQEAFSKWYPASLTKLMTAYV 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L TP+ +SK AS P + FK G MTLDNALK+++VKSAND+A+A++ Sbjct: 71 TFRAIQSGQVSLDTPVVMSKLASAQPAAKMYFKPGQKMTLDNALKMMLVKSANDLAMAVS 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +++ FV MN + LG+ THF+N +G+ G YTTARD+A+LS ++ +FPQY Sbjct: 131 ETIGGSQQGFVARMNAEAARLGMLDTHFINPNGLPGQGQYTTARDLAVLSVALRREFPQY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF ++G K+ PN N +G + GADGMKTGF CA+GFN +ASA + ++LI+V+L Sbjct: 191 AGYFSLEGFTNGVKQVPNINMLIGRYDGADGMKTGFICAAGFNQIASATRNGRTLISVVL 250 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 G R SA+ L GF N+ K ++ + ++V +++ E+C+ + I Sbjct: 251 GTDSLAARADDSANFLEKGFQNQFSGKDTLANLRPYGPGQ--DQVADLTAEICSAKGAKI 308 Query: 305 NYNTQMKEAKDKES----HFIDFEK 325 T+ + + K + H +D E Sbjct: 309 RSETRDEAGRMKVTSPYIHEMDHEP 333 >gi|238913835|ref|ZP_04657672.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 400 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|204930006|ref|ZP_03221027.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321000|gb|EDZ06201.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 400 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 105/356 (29%), Positives = 162/356 (45%), Gaps = 24/356 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 QGD LI+V+LGA R S LL+ GF I Q+ + P + Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEV 310 Query: 293 ------SEEVCTTQKEIIN------YNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + V + ++ N N A K+ + L I ++ Sbjct: 311 NLGAGDAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQR 366 >gi|125973197|ref|YP_001037107.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|281417396|ref|ZP_06248416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|125713422|gb|ABN51914.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|281408798|gb|EFB39056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 404 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 160/320 (50%), Gaps = 12/320 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D TG ++ EN AS+TK+M+ +V + K + +T S+ A Sbjct: 52 QAKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYA 111 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K LG Sbjct: 112 ASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELG 171 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 ++ T+F++ G+ GHY+TA D+A++S + P+ + + I + ++ NTN Sbjct: 172 MNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTN 231 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL GF Sbjct: 232 KLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGF 291 Query: 265 YNKTDRK--KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ---MKEAKDKESH 319 N ++ K ++ + + +P I K + + + ++E + K Sbjct: 292 ANYESKQVNKKGEVVNEIEVKR--ALIPKIKALYGDDVKLLFARSDKGKVVREVRLKSFL 349 Query: 320 FIDF---EKITLLKNKITKK 336 EK+ + KI +K Sbjct: 350 TAPVAKGEKVGEVVYKIGEK 369 >gi|256004001|ref|ZP_05428987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|255992129|gb|EEU02225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316940572|gb|ADU74606.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 404 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 161/320 (50%), Gaps = 12/320 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + Y L+D TG ++ EN AS+TK+M+ +V + K + +T S+ A Sbjct: 52 QAKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYA 111 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K LG Sbjct: 112 ASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELG 171 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTN 204 ++ T+F++ G+ GHY+TA D+A++S + P+ + + I + ++ NTN Sbjct: 172 MNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTN 231 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL GF Sbjct: 232 KLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGF 291 Query: 265 YNKTDRK--KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ---MKEAKDKESH 319 N ++ K ++ + + +P I K + + + ++E + K S Sbjct: 292 ANYESKQVNKKGEVVNEIEVKR--ALIPKIKALYGDDVKLLFARSDKGKVVREVRLKSSL 349 Query: 320 FIDF---EKITLLKNKITKK 336 EK+ + KI +K Sbjct: 350 TAPVAKGEKVGEVVYKIGEK 369 >gi|161613330|ref|YP_001587295.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362694|gb|ABX66462.1| hypothetical protein SPAB_01041 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 388 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 M++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 1 MKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 241 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIW 300 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 301 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 338 >gi|82703112|ref|YP_412678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosospira multiformis ATCC 25196] gi|82411177|gb|ABB75286.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Nitrosospira multiformis ATCC 25196] Length = 404 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 6/278 (2%) Query: 1 MRQFLVIIAMAMLSNIFP----FLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 MR+ L I + + F + +T Y L D +G V+ +PA Sbjct: 26 MRRLLPISLCLLALPLAAQQPQFHAPPQTLSVAAKSYILADLQSGQVLVSKNAHERVDPA 85 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAYVVF+ L +K+ LT + +S A S + +T+D ++ +IV+ Sbjct: 86 SLTKLMTAYVVFAALYQKRVTLTQAVPVSTRAWRAQGSRMFIEPKKPVTVDELMRGMIVQ 145 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++A+AE++ +E+ F Q MN + +G+ T F N+ G+ HYTTA D+A+L+ Sbjct: 146 SGNDASIALAEAVSGSEEAFAQAMNKEAARMGMKNTRFANSTGLPDPDHYTTAYDLALLA 205 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I DFP+Y + +K N N + DGMKTG T A+G+ ++ SA + Sbjct: 206 TAIIRDFPEYYPLYSLKEYTYNKITQANRNRLLWLDPNVDGMKTGHTDAAGYCLITSARR 265 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + L+AV++G + R S LL+ GF + Sbjct: 266 GQRRLVAVVMGTASESARAMESQRLLNYGFQFYDTVRL 303 >gi|16764225|ref|NP_459840.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992114|ref|ZP_02573212.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419371|gb|AAL19799.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329616|gb|EDZ16380.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246119|emb|CBG23922.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992623|gb|ACY87508.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157447|emb|CBW16936.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911888|dbj|BAJ35862.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226445|gb|EFX51496.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129170|gb|ADX16600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987795|gb|AEF06778.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 400 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|121997803|ref|YP_001002590.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halorhodospira halophila SL1] gi|121589208|gb|ABM61788.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Halorhodospira halophila SL1] Length = 392 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 150/290 (51%), Gaps = 18/290 (6%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAE-----------------TNKLPYYTLLDTNTGHVI 42 MR+ L ++ A+L+ +++A+ + P + L+D ++G+++ Sbjct: 2 MRRTLLRVLVPALLTVGLIPMAMADERWGTPIVESVPTPSPPSVGAPSHLLVDMHSGYIL 61 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102 A P+ W PASL K+MTAYVVF L L +T+S+ A S + G+ + Sbjct: 62 AHRDPEESWEPASLAKIMTAYVVFEELASGHIGLEDKVTVSEKAWRSSGSRMFLEVGTEV 121 Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 T+ L+ LIV+S ND AVA+AE + E+ F Q MN + LG+ TH+ NA G+ Sbjct: 122 TVAELLQGLIVQSGNDAAVALAEHVAGDEETFAQVMNQYASRLGMDNTHYTNATGMPHEQ 181 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 TTA+D A L+ + DFP++ ++ + E G N N + DG+KTG+T Sbjct: 182 MRTTAQDTARLARAMIDDFPEFYDWYSQRSFEYAGINQHNRNRLLWRDETVDGLKTGYTS 241 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 ++G+N+V SA +G LI+V+LG + R + S LL+ GF + Sbjct: 242 SAGYNLVTSAERGGMRLISVVLGTESEDARAQQSLQLLNYGFRFFETHRL 291 >gi|331682347|ref|ZP_08382966.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H299] gi|331079978|gb|EGI51157.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H299] Length = 403 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAACSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|218548358|ref|YP_002382149.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia fergusonii ATCC 35469] gi|218355899|emb|CAQ88514.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia fergusonii ATCC 35469] Length = 400 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 145/281 (51%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ A+L P + AE + + L+D +G V+AE D +PASLTK+ Sbjct: 11 LVAGSALLFLFAPTVQAAEQAIDAPSVDARAWVLMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ ++A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 S + D P+ + K + PN N + + L DG+KTG T +G+N+VASA Sbjct: 191 SKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|16759773|ref|NP_455390.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142454|ref|NP_805796.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414047|ref|YP_151122.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179427|ref|YP_215844.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614874|ref|YP_001588839.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168263619|ref|ZP_02685592.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194445951|ref|YP_002040103.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470485|ref|ZP_03076469.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262228|ref|ZP_03162302.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362970|ref|YP_002142607.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200391099|ref|ZP_03217710.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352115|ref|YP_002225916.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856297|ref|YP_002242948.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213583237|ref|ZP_03365063.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612370|ref|ZP_03370196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|224582675|ref|YP_002636473.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289827182|ref|ZP_06545924.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25297768|pir||AD0604 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502066|emb|CAD05302.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138084|gb|AAO69645.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128304|gb|AAV77810.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127060|gb|AAX64763.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364238|gb|ABX68006.1| hypothetical protein SPAB_02628 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404614|gb|ACF64836.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456849|gb|EDX45688.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197094447|emb|CAR59963.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240483|gb|EDY23103.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603544|gb|EDZ02090.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271896|emb|CAR36737.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205347698|gb|EDZ34329.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708100|emb|CAR32392.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467202|gb|ACN45032.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320085138|emb|CBY94925.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322713895|gb|EFZ05466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622581|gb|EGE28926.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627157|gb|EGE33500.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 400 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|213428063|ref|ZP_03360813.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 402 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|324112725|gb|EGC06701.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253] gi|325496781|gb|EGC94640.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia fergusonii ECD227] Length = 403 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 145/281 (51%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ A+L P + AE + + L+D +G V+AE D +PASLTK+ Sbjct: 14 LVAGSALLFLFAPTVQAAEQAIDAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ ++A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 S + D P+ + K + PN N + + L DG+KTG T +G+N+VASA Sbjct: 194 SKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|311278994|ref|YP_003941225.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308748189|gb|ADO47941.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 395 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 152/335 (45%), Gaps = 33/335 (9%) Query: 2 RQFLVI------IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 R F+ + I+ A ++ P + + L+D TG ++ NPAS Sbjct: 11 RMFIAVSLLASGISCAFAADALPITVSPPAIQAGAWVLMDYTTGQILTAGNEHQQRNPAS 70 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTKLMT YVV + +K +T+ +A S K G +T+ + + Sbjct: 71 LTKLMTGYVVDRAIDSRKITPDDMVTVGHDAWAKGNPVFDGSSLMFLKPGDRLTVRDLSR 130 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LIV S ND VA+A+ + + +FVQ MN + LGL THF HG+ G +++A D Sbjct: 131 GLIVDSGNDACVALADYVAGGQPQFVQLMNGYVQKLGLKDTHFETVHGLDAPGQHSSAYD 190 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 +A+LS I P + H + K L G N N + + DG+KTG T +GFN+ Sbjct: 191 LAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNL 250 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYII 277 +ASA+ G++ LIAV++GA R + + LL G N + +I Y Sbjct: 251 IASAVDGERRLIAVVMGAESAKGREEQARKLLHWGQQNFDTVQILHSGKQVGSERIWYGD 310 Query: 278 K---------DFYQQNLSNEVPNISEEVCTTQKEI 303 K DF+ EVPNI + KE+ Sbjct: 311 KEQIRLGTDQDFWLALPKAEVPNIKAKYVLDAKEL 345 >gi|281416991|ref|ZP_06248011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|281408393|gb|EFB38651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 384 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 3/286 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R V+ + +F + A+ + L++ +TG V+ E D P PAS+TK+M Sbjct: 8 RSVSVLAVITFFVMMFQVTAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + F L++ + IS+ A S G + + V SAND Sbjct: 68 TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGC 127 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE L +E+ FVQ MN +K LGL+ T+F N++G+ GH +ARD++ L+ + + Sbjct: 128 VALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQN 187 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P+ + + N N +G F GADG+KTG+T +G+ IV +A Q Q +I Sbjct: 188 YPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMI 247 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKDFYQQN 284 V+L R+K LL+ GF N K I+ +N Sbjct: 248 GVVLKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKN 293 >gi|146312224|ref|YP_001177298.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter sp. 638] gi|145319100|gb|ABP61247.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 394 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 149/338 (44%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L I + S++ P L+ + + L+D TG ++ N Sbjct: 7 LKRRLFIALSLLASSVTPALAADPLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRN 66 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K G +++ + Sbjct: 67 PASLTKLMTGYVVDRAIDSHRITPDDMVTVGRDAWAKGNPVFDGSSLMFLKAGERVSVRD 126 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN + LGL THF HG+ G +++ Sbjct: 127 LSRGLIVDSGNDACVALADYVAGGQPQFVNMMNEYVQKLGLRDTHFETVHGLDAPGQHSS 186 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P + H + K L G N N + L DG+KTG T +G Sbjct: 187 AYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGVTQQNRNGLLWDKNLKVDGLKTGHTSGAG 246 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAVI+G R + LL G N + ++ K Sbjct: 247 FNLIASAVDGQRRLIAVIMGGESPKGREDQARKLLHWGQQNFDTVQILHNGKKVGTERIW 306 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ EV NI + +KE+ Sbjct: 307 YGDKEHISLGTDQDFWLALPKAEVANIKAKYVLDKKEL 344 >gi|323227523|gb|EGA11683.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 402 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 160/351 (45%), Gaps = 24/351 (6%) Query: 10 MAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + + P + +T P + L+D +G V+AE D +PASLTK+MT+YV Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V LK K LT +T+ K+A S K G +++ + K +I++S ND Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L + Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + PN N + T L DGMKTG T +G+N+VASA QGD Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----- 292 LI+V+LGA R S LL+ GF I Q+ + P + Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEVNLGAG 315 Query: 293 -SEEVCTTQKEIIN------YNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + V + ++ N N A K+ + L I ++ Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQR 366 >gi|322616338|gb|EFY13247.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619588|gb|EFY16463.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622716|gb|EFY19561.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628628|gb|EFY25415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631565|gb|EFY28321.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637092|gb|EFY33795.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641708|gb|EFY38344.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644498|gb|EFY41038.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648431|gb|EFY44883.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654166|gb|EFY50489.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658081|gb|EFY54348.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663555|gb|EFY59757.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670291|gb|EFY66431.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671527|gb|EFY67649.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676883|gb|EFY72950.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682808|gb|EFY78827.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686487|gb|EFY82469.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196059|gb|EFZ81222.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196794|gb|EFZ81938.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204806|gb|EFZ89801.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208966|gb|EFZ93903.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209715|gb|EFZ94642.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215197|gb|EFZ99942.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222423|gb|EGA06799.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229875|gb|EGA13998.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233100|gb|EGA17196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240835|gb|EGA24877.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243152|gb|EGA27172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248693|gb|EGA32621.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251695|gb|EGA35562.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257509|gb|EGA41197.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261490|gb|EGA45071.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267921|gb|EGA51400.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272012|gb|EGA55427.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 400 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 160/351 (45%), Gaps = 24/351 (6%) Query: 10 MAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + + P + +T P + L+D +G V+AE D +PASLTK+MT+YV Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V LK K LT +T+ K+A S K G +++ + K +I++S ND Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L + Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + PN N + T L DGMKTG T +G+N+VASA QGD Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----- 292 LI+V+LGA R S LL+ GF I Q+ + P + Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEVNLGAG 315 Query: 293 -SEEVCTTQKEIIN------YNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + V + ++ N N A K+ + L I ++ Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQR 366 >gi|170769785|ref|ZP_02904238.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170121399|gb|EDS90330.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 390 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 18/342 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A + N+ PF + L+D TG ++ N Sbjct: 3 LKRRLFIAASLFVFNLSSSQAAENIPFSPQPPAIHAGSWVLMDYTTGQILTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV MNN ++ L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQRQFVDMMNNYAEKLHLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P + H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K ++ Sbjct: 243 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 302 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + NI+ T++ + + K + +D +++T Sbjct: 303 YGDKENIA---LGTEQGFWMVLPKTEIPNIKAKYTLDGKELT 341 >gi|170768996|ref|ZP_02903449.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170122068|gb|EDS90999.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 403 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 144/281 (51%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSALLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +TI K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|125972794|ref|YP_001036704.1| penicillin-binding protein 6 [Clostridium thermocellum ATCC 27405] gi|256004983|ref|ZP_05429955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|125713019|gb|ABN51511.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Clostridium thermocellum ATCC 27405] gi|255991052|gb|EEU01162.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316940970|gb|ADU75004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 384 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 3/286 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R V+ + +F + A+ + L++ +TG V+ E D P PAS+TK+M Sbjct: 8 RSVSVLAVITFFVMMFQVKAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + F L++ + IS+ A S G + + V SAND Sbjct: 68 TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGC 127 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE L +E+ FVQ MN +K LGL+ T+F N++G+ GH +ARD++ L+ + + Sbjct: 128 VALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQN 187 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P+ + + N N +G F GADG+KTG+T +G+ IV +A Q Q +I Sbjct: 188 YPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMI 247 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKDFYQQN 284 V+L R+K LL+ GF N K I+ +N Sbjct: 248 GVVLKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKN 293 >gi|224825266|ref|ZP_03698371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum 2002] gi|224602187|gb|EEG08365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum 2002] Length = 380 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 168/354 (47%), Gaps = 19/354 (5%) Query: 1 MRQF---LVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ LV A+A+ S F PF+ Y L+D +G V+A + PD PA Sbjct: 1 MKKLTSLLVAAAVALPSVSFANAPFVPPVPEIAGKAYYLVDFYSGQVVASSDPDKRIAPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMT Y+ + +KEK+ L +T+S S +++D+ +K + V+ Sbjct: 61 SLTKLMTGYLTYKAIKEKRLTLDQKLTVSHKGWTTGGSRMFLDPKIPVSVDDLIKGMDVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND V +AE++ +E+ F Q M ++ LG++ T F NA G+ HYTT D+ IL+ Sbjct: 121 SGNDACVTLAEAIAGSEEAFGQMMTAEARRLGMNNTQFRNATGLPNPEHYTTVHDLGILA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I ++P++ + +K G PN N + DGMKTGFT +G+N+VAS+ + Sbjct: 181 SAIIREYPEFYKTYSLKSFTYNGISQPNRNLLLYRDPNVDGMKTGFTDDAGYNMVASSRR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-----DFYQQNLSNEV 289 + +I+V++G R S+ LL+ G D K+ K Y+ + Sbjct: 241 DGRRVISVVVGTASPEARAVESSKLLNYGL-QFFDTPKLYAASKPVSEIPVYKGDAKKLP 299 Query: 290 PNISEEVCTT-------QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + +V TT Q + +Q A K + ++L K+ ++ Sbjct: 300 IGFASDVYTTVLKGQSAQLKADLTTSQPVIAPIKAGQVVGKLVVSLDGKKVLER 353 >gi|213648937|ref|ZP_03378990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 387 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P + K + PN N + T L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|153873396|ref|ZP_02001993.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS] gi|152070138|gb|EDN68007.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS] Length = 393 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 138/262 (52%), Gaps = 8/262 (3%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 ++ + S + P Y L D +G V+ E D PASLTKLMTAY+VF Sbjct: 17 SLTLASLLVPS---PPPIAARAYILQDFYSGKVLMEKKADERLEPASLTKLMTAYLVFQK 73 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 LK K LT P+ IS+ A + S G+ + +D LK +I++S ND +VA+AE + Sbjct: 74 LKIGKIKLTDPVKISQKAWKMGGSRMYLDPGTFVPVDLLLKGMIIQSGNDASVALAELIG 133 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 TE+ F MN ++ LGL TH++N+ G+ HY+TARD A ++ + DFP Y ++ Sbjct: 134 GTEQAFATLMNEQAQRLGLKNTHYVNSTGLPDEQHYSTARDSATIAQALIYDFPSYYRWY 193 Query: 189 QIKGLEIKGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 N N + DGMKTG+T A+G+ +VASAI+ + LI+V+ Sbjct: 194 SGSEFTYNNITQTNRNRLLRRKPPLKGMKVDGMKTGYTDAAGYCLVASAIRKNMRLISVV 253 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 LG + R +VS +L GF Sbjct: 254 LGTKNEKARTEVSERMLDYGFR 275 >gi|16128807|ref|NP_415360.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. MG1655] gi|89107690|ref|AP_001470.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|157160319|ref|YP_001457637.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli HS] gi|170020804|ref|YP_001725758.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli ATCC 8739] gi|170080498|ref|YP_001729818.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. DH10B] gi|188494572|ref|ZP_03001842.1| penicillin-binding protein 6 [Escherichia coli 53638] gi|238900098|ref|YP_002925894.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BW2952] gi|253774159|ref|YP_003036990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160916|ref|YP_003044024.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B str. REL606] gi|256023565|ref|ZP_05437430.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia sp. 4_1_40B] gi|297518732|ref|ZP_06937118.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli OP50] gi|312970918|ref|ZP_07785097.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|2506804|sp|P08506|DACC_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6; Short=PBP-6; Flags: Precursor gi|1651381|dbj|BAA35542.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. MG1655] gi|157065999|gb|ABV05254.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS] gi|169755732|gb|ACA78431.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] gi|169888333|gb|ACB02040.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli str. K-12 substr. DH10B] gi|188489771|gb|EDU64874.1| penicillin-binding protein 6 [Escherichia coli 53638] gi|238860730|gb|ACR62728.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BW2952] gi|242376630|emb|CAQ31340.1| penicillin-binding protein 6 [Escherichia coli BL21(DE3)] gi|253325203|gb|ACT29805.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972817|gb|ACT38488.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli B str. REL606] gi|253977037|gb|ACT42707.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli BL21(DE3)] gi|309701117|emb|CBJ00415.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli ETEC H10407] gi|310336679|gb|EFQ01846.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|315619844|gb|EFV00363.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431] gi|332342172|gb|AEE55506.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88] Length = 400 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|89092035|ref|ZP_01164990.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92] gi|89083770|gb|EAR62987.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92] Length = 387 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 158/341 (46%), Gaps = 15/341 (4%) Query: 3 QFLVIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ + + + + + + Y ++D +TG VIA D P+ PASLTK Sbjct: 9 KYFYALVLTLFAIQVHAVARLIPAEPQIAATAYLVMDADTGKVIASKNADKPFAPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTAY++ L + L + IS+ A S ++G+ + L + +K +I++S ND Sbjct: 69 MMTAYILEYELSKGNVGLEDLVLISEKAWRTQGSRMFIREGTQVRLGDLMKGIIIQSGND 128 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE + +E F MN + LG+ T+F+NA G+ GH ++A D+A L+ I Sbjct: 129 ASVAVAEHIAGSEPAFADLMNQHADLLGMKNTNFLNATGLPADGHESSAADLATLAKAII 188 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP + K + PN N + DGMKTG+T A+G+ +VASA + Sbjct: 189 NDFPDLYSIYSEKYFTYNDIRQPNRNKLLWRDKTVDGMKTGYTDAAGYCLVASAKRDGMR 248 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 LI+V+LG D R + S LLS F K Y+ + + V Sbjct: 249 LISVVLGTKDEEARARESQKLLSYAFRYYRTHK--------LYESGVMLNTTKVWSGVQD 300 Query: 299 TQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 K IN T + DK +D +++ + ++ Sbjct: 301 QLKIGINESLSVTIPRGQADKLQATMDVDRVIKAPIEKGQE 341 >gi|119946648|ref|YP_944328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychromonas ingrahamii 37] gi|119865252|gb|ABM04729.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychromonas ingrahamii 37] Length = 406 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 8/304 (2%) Query: 1 MRQF-LVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ L++ A+ N+F +I A Y L+D N+G V++EN D NPASL Sbjct: 16 MKKISLLVTALIFSFNLFANPTITPSAPEIGAKGYLLIDFNSGKVLSENNSDVRLNPASL 75 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TK+MT+Y++ +K +TIS+ A S + G +++ + + +I+ Sbjct: 76 TKMMTSYIIGQEIKSGNLSPDDKVTISEKAWSKNFPESSKMFIEVGKEVSVADLNRGIII 135 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E F MN+ + LG++ T F N+HG+ GHYTT DMAIL Sbjct: 136 QSGNDACVAMAEYIAGSEGAFADLMNSWAAQLGMNNTQFKNSHGLTAEGHYTTPHDMAIL 195 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P + K + G PN N + L DG+KTG T +G+++++SA Sbjct: 196 AQALINDVPDEYLIYSEKSFKFNGIDQPNRNALLWDKSLDVDGIKTGHTNEAGYSLISSA 255 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + LI+V++G + R S LL+ GF N + ++ P I Sbjct: 256 TKDGMRLISVVMGTRSTSARLTESKKLLNWGFRFFETLTPYNAGDQLANERIWMGSQPMI 315 Query: 293 SEEV 296 V Sbjct: 316 RLGV 319 >gi|327188719|gb|EGE55918.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 366 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 126/331 (38%), Positives = 192/331 (58%), Gaps = 15/331 (4%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR +F V A L+++ S+A+ N + L+D TG V+ W PASLTK Sbjct: 1 MRLLRFTVAATAAFLASV----SLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTK 53 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSAND Sbjct: 54 LMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSAND 113 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAVA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ Sbjct: 114 IAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 173 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFPQY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++ Sbjct: 174 RDFPQYAGYFSLEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 233 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 L++V+LG R +A+LL GF + +K + Q ++V +I+ ++C+ Sbjct: 234 LVSVVLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICS 291 Query: 299 TQKEIINYNTQMKEAKDKESHF----IDFEK 325 + I T+ + + K + +D + Sbjct: 292 AKGAKIRSETRDEVGRMKVTSPYILEMDHDP 322 >gi|238897881|ref|YP_002923560.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465638|gb|ACQ67412.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 384 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 18/317 (5%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 +LSN+ P + K Y L+D N+G ++AE D PASLTK+MT+YV+ +K Sbjct: 12 ILLSNLIP---VPPEIKAVSYILMDYNSGKILAEKNADEHRMPASLTKMMTSYVIGQAIK 68 Query: 71 EKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K + +T+ K+A S K G +++ + + ++S ND VA+A Sbjct: 69 SEKIGVNDIVTVGKDAVSTGNPEFKGSSLMFLKPGDQVSVAQLTRGITLQSGNDACVAMA 128 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 + ++ FV MN ++ +GL THF N HG+ G YT+ARDMA++ + D P Sbjct: 129 NYVAGSQDSFVHLMNAYAQEMGLKNTHFKNVHGLDSEGQYTSARDMALMGRALIHDVPDE 188 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ K + N N + L DG+KTG T A+G+N+VASA QG LI+V+ Sbjct: 189 YAIYKEKEFTFNQIRQLNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATQGPMRLISVV 248 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 LG R S LLS GF ++ ++ P +V T Q Sbjct: 249 LGGRTFKEREAESKKLLSWGFRFFET-------VEPLKAGDVFASRPVWFGDVNTAQL-G 300 Query: 304 INYNTQMKEAKDKESHF 320 ++ N + KD+ H Sbjct: 301 VDKNIYLTLPKDQGKHL 317 >gi|331656861|ref|ZP_08357823.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA206] gi|331055109|gb|EGI27118.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA206] Length = 392 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 8/281 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +++ L + + + ++ A + + L+D +G V+AE D +PASLTK+ Sbjct: 3 LQRVLHFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 63 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 123 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 182 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 183 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 242 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 243 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 283 >gi|161503974|ref|YP_001571086.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865321|gb|ABX21944.1| hypothetical protein SARI_02067 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 142/285 (49%), Gaps = 14/285 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 F + A +L +F AE + L+D +G V+AE D +PAS Sbjct: 7 SFRSLTAGLVLLFLFASSVKAEEQTIAPPDVDARAWILMDYASGKVLAEGNADEKLDPAS 66 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTK+MT+YVV LK K LT +T+ K+A S K G +++ + K Sbjct: 67 LTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARD Sbjct: 127 GIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARD 186 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA+L + D P + K + PN N + T L DGMKTG T +G+N+ Sbjct: 187 MALLGKALIHDVPDEYALHKEKEFTFNNIRQPNRNRLLWSTNLQVDGMKTGTTSGAGYNL 246 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 VASA QGD LI+V+LGA R S LL+ GF I Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|332091585|gb|EGI96666.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 155-74] Length = 301 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 15/293 (5%) Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+I A + N+ PF + L+D TG ++ N Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++ Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 FN++AS + G + LIAV++GA R + + LL G N T + ++ K Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKK 293 >gi|188025727|ref|ZP_02959597.2| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827] gi|188020262|gb|EDU58302.1| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827] Length = 402 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 20/338 (5%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ E + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K Sbjct: 36 PVPAVPEID-AEAYILIDYNSGKVLAEKNADQRRDPASLTKMMTSYVIGQAIKSGKIGAE 94 Query: 78 TPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 +T++++A S K G +++ + + ++S ND VA+A+ + + Sbjct: 95 DIVTVNEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVAGDQ 154 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F+Q MN LGL THF HG+ G Y++ARDMA+L + D P ++ K Sbjct: 155 ANFIQLMNGYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALLGQALIRDVPDEYAIYKEK 214 Query: 192 GLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + N N + L DG+KTG T A+G+N+VASA +G LI+V++G Sbjct: 215 EFTFNNIRQTNRNGLLWDKSLSVDGIKTGHTNAAGYNLVASATEGQMRLISVVMGGKSMK 274 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC------------T 298 R+ S LL+ GF K + ++ + + N+ V Sbjct: 275 GRDAESKKLLTYGFRFYETVKPLQAGVEFASEPVWFGDENNVKLGVTEDLFLTIPRGRLK 334 Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 K + +T EA K+ + L I ++ Sbjct: 335 DLKASYDISTSELEAPLKKGQAVGTINFQLDGKTIEQR 372 >gi|82777459|ref|YP_403808.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197] gi|81241607|gb|ABB62317.1| penicillin binding protein 6b [Shigella dysenteriae Sd197] Length = 378 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 10/331 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ ++ + PF + L+D TG ++ NPASLTKLMT Y Sbjct: 2 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTSGNEHQQRNPASLTKLMTGY 61 Query: 64 VVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 VV + + +T+ ++A S K+G +++ + + LIV S N Sbjct: 62 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 121 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+A+ + +++FV+ MNN + L L THF HG+ G +++A D+A+LS I Sbjct: 122 DACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 181 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 P++ H + K L G N N + + DG+KTG T +GFN++ASA+ G Sbjct: 182 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLMASAVDGQ 241 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 + LIAV++GA R + + LL G N T + ++ K ++ + NI+ Sbjct: 242 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIA--- 298 Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 T++E + + K + +D +++T Sbjct: 299 LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 329 >gi|194438401|ref|ZP_03070491.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|301027029|ref|ZP_07190410.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|307137467|ref|ZP_07496823.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli H736] gi|194422625|gb|EDX38622.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|299879457|gb|EFI87668.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] Length = 403 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] gi|133740058|emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase) transmembrane protein [Herminiimonas arsenicoxydans] Length = 382 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +A+A+LS F + A T + LLD + ++A N D PASLTK Sbjct: 1 MKKLFAALAVAVLSLSTAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASLTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116 LMTAYV FS +++K+ L IT+S NA + P S + +++++ L LIV+S Sbjct: 61 LMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQSG 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+AE++ TE F MN ++ +G+ +T F N HG+ +Y+TARD+A+L+ Sbjct: 121 NDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLATH 180 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234 + +D P++ + K K N N + DGMKTG+T +G+ ++++A + Sbjct: 181 LVSDHPEFYKIYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRPN 240 Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 ++ LI+V++G R + S LL+ GF N K Y ++++ + PN+ Sbjct: 241 GANERRLISVVIGTASDQARAQESQKLLNWGFQNFDAVK--------LYSKDVAIDTPNV 292 >gi|187730201|ref|YP_001880973.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella boydii CDC 3083-94] gi|187427193|gb|ACD06467.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC 3083-94] Length = 400 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|260450014|gb|ACX40436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] Length = 400 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRFRFNESEKLLTWGFRFFETVTPI 291 >gi|15800591|ref|NP_286605.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 EDL933] gi|15830173|ref|NP_308946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. Sakai] gi|110641041|ref|YP_668771.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 536] gi|157157612|ref|YP_001462035.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli E24377A] gi|195936884|ref|ZP_03082266.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. EC4024] gi|209918088|ref|YP_002292172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli SE11] gi|215485925|ref|YP_002328356.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O127:H6 str. E2348/69] gi|218553425|ref|YP_002386338.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli IAI1] gi|218688622|ref|YP_002396834.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli ED1a] gi|218694313|ref|YP_002401980.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 55989] gi|218699214|ref|YP_002406843.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli IAI39] gi|218704263|ref|YP_002411782.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UMN026] gi|254792035|ref|YP_003076872.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. TW14359] gi|260843090|ref|YP_003220868.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2 str. 12009] gi|260854131|ref|YP_003228022.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11 str. 11368] gi|260867013|ref|YP_003233415.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H- str. 11128] gi|261225489|ref|ZP_05939770.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O157:H7 str. FRIK2000] gi|293433137|ref|ZP_06661565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B088] gi|306812759|ref|ZP_07446952.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli NC101] gi|307314524|ref|ZP_07594127.1| Beta-lactamase [Escherichia coli W] gi|312969138|ref|ZP_07783345.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|12513851|gb|AAG55215.1|AE005265_5 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Escherichia coli O157:H7 str. EDL933] gi|13360378|dbj|BAB34342.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli O157:H7 str. Sakai] gi|110342633|gb|ABG68870.1| penicillin-binding protein 6 precursor [Escherichia coli 536] gi|157079642|gb|ABV19350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|209775538|gb|ACI86081.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775540|gb|ACI86082.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775542|gb|ACI86083.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775544|gb|ACI86084.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209775546|gb|ACI86085.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6 [Escherichia coli] gi|209911347|dbj|BAG76421.1| penicillin-binding protein 6 [Escherichia coli SE11] gi|215263997|emb|CAS08338.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O127:H6 str. E2348/69] gi|218351045|emb|CAU96749.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli 55989] gi|218360193|emb|CAQ97743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli IAI1] gi|218369200|emb|CAR16955.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli IAI39] gi|218426186|emb|CAR07008.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli ED1a] gi|218431360|emb|CAR12238.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli UMN026] gi|222032568|emb|CAP75307.1| Penicillin-binding protein 6 [Escherichia coli LF82] gi|254591435|gb|ACT70796.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli O157:H7 str. TW14359] gi|257752780|dbj|BAI24282.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11 str. 11368] gi|257758237|dbj|BAI29734.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2 str. 12009] gi|257763369|dbj|BAI34864.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H- str. 11128] gi|281177974|dbj|BAI54304.1| penicillin-binding protein 6 [Escherichia coli SE15] gi|284920692|emb|CBG33755.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli 042] gi|291323956|gb|EFE63378.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B088] gi|305853522|gb|EFM53961.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli NC101] gi|306905947|gb|EFN36469.1| Beta-lactamase [Escherichia coli W] gi|307552682|gb|ADN45457.1| penicillin-binding protein 6 precursor [Escherichia coli ABU 83972] gi|312286540|gb|EFR14453.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312945356|gb|ADR26183.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O83:H1 str. NRG 857C] gi|315060077|gb|ADT74404.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli W] gi|320637705|gb|EFX07497.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. G5101] gi|320642829|gb|EFX12030.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H- str. 493-89] gi|320648286|gb|EFX16941.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H- str. H 2687] gi|320654123|gb|EFX22191.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659747|gb|EFX27303.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O55:H7 str. USDA 5905] gi|320664217|gb|EFX31368.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. LSU-61] gi|323155789|gb|EFZ41958.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14] gi|323159661|gb|EFZ45640.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010] gi|323165770|gb|EFZ51556.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G] gi|323172242|gb|EFZ57880.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68] gi|323175540|gb|EFZ61135.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180] gi|323185244|gb|EFZ70609.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357] gi|323191008|gb|EFZ76275.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1] gi|323379365|gb|ADX51633.1| Beta-lactamase [Escherichia coli KO11] gi|327253626|gb|EGE65255.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v] Length = 400 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|254418835|ref|ZP_05032559.1| beta-lactamase, putative [Brevundimonas sp. BAL3] gi|196185012|gb|EDX79988.1| beta-lactamase, putative [Brevundimonas sp. BAL3] Length = 493 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 103/287 (35%), Positives = 161/287 (56%), Gaps = 4/287 (1%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R ++A++++ +N+ P + ++ N ++D +G V+ + D PASLTK+ Sbjct: 7 RGLFAVLALSLVLGANVRPIEAQSQENSRYAAIVIDAASGEVLFSRHADSRRYPASLTKM 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F L + K +T+S+ A+ PPS G T+TLD+A++ V+SAND+ Sbjct: 67 MTLYLTFEALSQGKVHADDVLTVSQQAAAQPPSKLGLGAGQTITLDDAMRATAVRSANDM 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVAIAE + +E +F M ++ LG++ T + A+G+ T+ARD AIL+ I Sbjct: 127 AVAIAEHIGGSESRFATLMTAKAQQLGMTQTRYFTANGLPDARQTTSARDQAILARAIMR 186 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFPQY YF + G+ Y NTN + T G DGMKTG+T ASG+N+ ASA++ + L Sbjct: 187 DFPQYYKYFGLHDWAYNGRSYRNTNGLLPTGNGYDGMKTGYTNASGYNLAASAVRDGRRL 246 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQN 284 I V+LG +RN A L+ GF + R + I + F++Q Sbjct: 247 ITVVLGGRSSASRNAHVAELMDTGFEVERRRSQGENIQIAQAFFEQR 293 >gi|300929353|ref|ZP_07144826.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300947071|ref|ZP_07161292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300957042|ref|ZP_07169288.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|301646276|ref|ZP_07246167.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|331641359|ref|ZP_08342494.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H736] gi|300316182|gb|EFJ65966.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300453310|gb|EFK16930.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300462699|gb|EFK26192.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|301075479|gb|EFK90285.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|323938194|gb|EGB34454.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] gi|323942711|gb|EGB38876.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] gi|323962952|gb|EGB58524.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] gi|331038157|gb|EGI10377.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H736] Length = 407 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|325982907|ref|YP_004295309.1| beta-lactamase [Nitrosomonas sp. AL212] gi|325532426|gb|ADZ27147.1| Beta-lactamase [Nitrosomonas sp. AL212] Length = 373 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 131/239 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L D TG V+A PASLTKLMTAYVVFS LK+ + L +S++A Sbjct: 27 AAKAFMLSDYQTGQVLAGQNVHERIEPASLTKLMTAYVVFSALKQGQLALNQTAVVSESA 86 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S + +T+D ++ +IV+S ND +A+AE++ +E FV MN +K LG Sbjct: 87 WRMIGSRMFIEPNKQVTVDELIRGMIVQSGNDACIALAETVAGSEANFVIIMNKEAKRLG 146 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + THF N G+ GHYTTA D+ +L+ I DFP + + +K PN N Sbjct: 147 MQNTHFTNTTGLPDPGHYTTAHDLTLLATAIIRDFPDFYPLYSLKEYTYNNITQPNRNRL 206 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DGMKTG+T A+G+ ++ SAI+ + LI+VI+GA N R+ S LL+ GF Sbjct: 207 LWIDPHVDGMKTGWTKAAGYCLITSAIRDKRRLISVIIGAKSANARSIESQRLLNYGFQ 265 >gi|271500864|ref|YP_003333889.1| beta-lactamase [Dickeya dadantii Ech586] gi|270344419|gb|ACZ77184.1| Beta-lactamase [Dickeya dadantii Ech586] Length = 402 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 160/358 (44%), Gaps = 24/358 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLT 57 + +V A +L + P L + P + L+D +G V+AE+ D +PASLT Sbjct: 11 RRIVAAATGILMAVSPVLQAEQMPPPPQIDAKAFILIDYGSGRVLAESNADTRLDPASLT 70 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G +++ + K + Sbjct: 71 KIMSSYVIGQAIKVGKITPEDKVTVGKDAWAGGNPTLRGSSLMFLKPGDQISVSDLNKGI 130 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA Sbjct: 131 VIQSGNDASIALADYVAGSQNAFVSLMNQYAATLGLTNTHFLTVHGLDTPGQYSTARDMA 190 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 L+ + D P K + PN N + + L DG+KTG+T +G ++VA Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSSNLRVDGVKTGYTDGAGHSLVA 250 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII------------K 278 SA+ GD LI+V+LGA R + S LL+ GF I K Sbjct: 251 SAVDGDMRLISVVLGAPSDTIRFRESEKLLTWGFRFFETATLIRSDTPFTTQRVWLGSEK 310 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + + K + +A K+ + L N I ++ Sbjct: 311 QVRLGVAQDAAMTVLKGQAKNLKASFTLAQRQLQAPLKKGQVVGTIDFQLDGNSIGQR 368 >gi|204929188|ref|ZP_03220331.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321732|gb|EDZ06931.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613672|gb|EFY10612.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620243|gb|EFY17112.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623289|gb|EFY20130.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630494|gb|EFY27263.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632829|gb|EFY29574.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638838|gb|EFY35532.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640341|gb|EFY37000.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647153|gb|EFY43652.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648980|gb|EFY45423.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653886|gb|EFY50210.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660993|gb|EFY57222.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663066|gb|EFY59273.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668511|gb|EFY64666.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673354|gb|EFY69457.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679140|gb|EFY75194.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683235|gb|EFY79250.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685895|gb|EFY81885.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195182|gb|EFZ80363.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198750|gb|EFZ83850.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202394|gb|EFZ87437.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209221|gb|EFZ94157.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209796|gb|EFZ94719.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216122|gb|EGA00852.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220678|gb|EGA05125.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223727|gb|EGA08034.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231333|gb|EGA15447.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232575|gb|EGA16672.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240982|gb|EGA25022.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245599|gb|EGA29594.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247629|gb|EGA31578.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251071|gb|EGA34945.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254840|gb|EGA38635.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263363|gb|EGA46897.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266318|gb|EGA49807.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271462|gb|EGA54884.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 390 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 +N++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 YNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|190893669|ref|YP_001980211.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190698948|gb|ACE93033.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 366 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 126/331 (38%), Positives = 191/331 (57%), Gaps = 15/331 (4%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR +F V A L+++ S+A+ N + L+D TG V+ W PASLTK Sbjct: 1 MRPLRFSVAATAAFLASV----SLAQANP---HILVDVQTGRVLEHEEAFRKWYPASLTK 53 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSAND Sbjct: 54 LMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSAND 113 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAVA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ Sbjct: 114 IAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 173 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFPQY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++ Sbjct: 174 RDFPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 233 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 L++V+LG R +A+LL GF + +K + Q ++V +I+ ++C+ Sbjct: 234 LVSVVLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICS 291 Query: 299 TQKEIINYNTQMKEAKDKESHF----IDFEK 325 + I T+ + + K +D + Sbjct: 292 AKGAKIRSETRDEVGRMKVHSPYILEMDHDP 322 >gi|218557743|ref|YP_002390656.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli S88] gi|218364512|emb|CAR02194.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli S88] gi|294493575|gb|ADE92331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034] gi|307627752|gb|ADN72056.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UM146] Length = 400 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|300916310|ref|ZP_07133057.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300416399|gb|EFJ99709.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] Length = 407 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDIVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|315135488|dbj|BAJ42647.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli DH1] Length = 403 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRFRFNESEKLLTWGFRFFETVTPI 294 >gi|283784604|ref|YP_003364469.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] gi|282948058|emb|CBG87622.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] Length = 400 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L P + AE + + L+D +G V+AE D +PASLTK+ Sbjct: 11 IAAGSALLFLFAPAVMAAEQTIAAPAVEARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +TI K+A S K G + + + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDRVAVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G Y+TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFRTVHGLDAPGQYSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + + DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNINVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFYETVTPI 291 >gi|168238798|ref|ZP_02663856.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734763|ref|YP_002115095.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710265|gb|ACF89486.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288431|gb|EDY27812.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 390 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|170681795|ref|YP_001742946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli SMS-3-5] gi|187776239|ref|ZP_02801387.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188024947|ref|ZP_02775045.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189010000|ref|ZP_02804398.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189402327|ref|ZP_02781640.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189402936|ref|ZP_02792356.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189404286|ref|ZP_02788318.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189404921|ref|ZP_02812067.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|189405883|ref|ZP_02824886.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|191166209|ref|ZP_03028043.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|191173711|ref|ZP_03035234.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|193064478|ref|ZP_03045559.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|193069405|ref|ZP_03050360.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|194428152|ref|ZP_03060695.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|208814959|ref|ZP_03256138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208822498|ref|ZP_03262817.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209400303|ref|YP_002269508.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|217324128|ref|ZP_03440212.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|291281838|ref|YP_003498656.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615] gi|293404143|ref|ZP_06648137.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1412] gi|293414116|ref|ZP_06656765.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B185] gi|298379925|ref|ZP_06989530.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1302] gi|331662200|ref|ZP_08363123.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA143] gi|331667211|ref|ZP_08368076.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA271] gi|170519513|gb|ACB17691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|187768212|gb|EDU32056.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188015679|gb|EDU53801.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4113] gi|189002710|gb|EDU71696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189356271|gb|EDU74690.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4401] gi|189363476|gb|EDU81895.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189366544|gb|EDU84960.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4501] gi|189373161|gb|EDU91577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|189377784|gb|EDU96200.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC508] gi|190903818|gb|EDV63533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190905961|gb|EDV65577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|192928940|gb|EDV82553.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|192957358|gb|EDV87806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|194413712|gb|EDX29991.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171] gi|208731607|gb|EDZ80295.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208737983|gb|EDZ85666.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209161703|gb|ACI39136.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|217320349|gb|EEC28773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|290761711|gb|ADD55672.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615] gi|291428729|gb|EFF01754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1412] gi|291434174|gb|EFF07147.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B185] gi|298279623|gb|EFI21131.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli FVEC1302] gi|320192682|gb|EFW67323.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320196666|gb|EFW71289.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|320199030|gb|EFW73627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|326338272|gb|EGD62101.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|326346249|gb|EGD69987.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|330910581|gb|EGH39091.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331060622|gb|EGI32586.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA143] gi|331065567|gb|EGI37460.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli TA271] Length = 403 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|212638842|ref|YP_002315362.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212560322|gb|ACJ33377.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 387 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 13/349 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++F +A+ +L + + + L++ +TG ++ E P PAS Sbjct: 3 MKRFFYALAIVLLFVPIVSVHAEQPKVELATEARSAILIERDTGAILYEKNAHEPLPPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT ++ + + K L + S+ A+ S + G MT+D+ LK + + S Sbjct: 63 MTKIMTMLLIMEAIDQGKLKLDERVRASEYAASMGGSQIFLEPGEEMTVDDLLKGIAIGS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +VA+AE + +E+ FV MN ++ LGL T F N G+ HY+TA DMA+++ Sbjct: 123 GNDASVALAERIAGSEEAFVHLMNEKARQLGLKHTAFENTTGLPAKNHYSTAYDMAMMAK 182 Query: 176 RIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + +Y ++ ++ K NTN V + G DG+KTG+T + + + A+ Sbjct: 183 ELLKYDLITKYTGTYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTSEAKYCLTAT 242 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNE 288 A +G+ +IAV+ GA RN +L F + + KK I + Sbjct: 243 AKKGNMRVIAVVFGAPTPKARNAQITKMLDYAFSHYETKPLYKKGETITMLPVSKGKKKS 302 Query: 289 VPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V + SE + K+ + K KE+ +K L + KK Sbjct: 303 VAVVTSEPISVLLKKGEKSDAVKTTWKLKETVKAPVKKGDTLGTLVVKK 351 >gi|323976776|gb|EGB71864.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] Length = 407 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|26246814|ref|NP_752854.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli CFT073] gi|227884197|ref|ZP_04002002.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 83972] gi|261258542|ref|ZP_05951075.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. FRIK966] gi|293409214|ref|ZP_06652790.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B354] gi|300817100|ref|ZP_07097319.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300823980|ref|ZP_07104102.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300895754|ref|ZP_07114347.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300907171|ref|ZP_07124834.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300924447|ref|ZP_07140417.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300939883|ref|ZP_07154518.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300991867|ref|ZP_07179692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300993443|ref|ZP_07180385.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|301020649|ref|ZP_07184722.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301051233|ref|ZP_07198062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301303598|ref|ZP_07209720.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|301325847|ref|ZP_07219280.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|309795413|ref|ZP_07689831.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|331646058|ref|ZP_08347161.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M605] gi|331651852|ref|ZP_08352871.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M718] gi|331676578|ref|ZP_08377274.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H591] gi|26107214|gb|AAN79397.1|AE016758_1 Penicillin-binding protein 6 precursor [Escherichia coli CFT073] gi|227838949|gb|EEJ49415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli 83972] gi|291469682|gb|EFF12166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B354] gi|300297140|gb|EFJ53525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300305477|gb|EFJ59997.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300360328|gb|EFJ76198.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300398577|gb|EFJ82115.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|300401046|gb|EFJ84584.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300406557|gb|EFJ90095.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300419332|gb|EFK02643.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300455265|gb|EFK18758.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300523491|gb|EFK44560.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300530452|gb|EFK51514.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300841097|gb|EFK68857.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300847361|gb|EFK75121.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|308121063|gb|EFO58325.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|315257828|gb|EFU37796.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] gi|315292514|gb|EFU51866.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] gi|315299413|gb|EFU58665.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] gi|323947137|gb|EGB43148.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] gi|323967274|gb|EGB62697.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] gi|323969597|gb|EGB64885.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|324009727|gb|EGB78946.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|324013062|gb|EGB82281.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] gi|324015963|gb|EGB85182.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] gi|324116152|gb|EGC10075.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] gi|331044810|gb|EGI16937.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M605] gi|331050130|gb|EGI22188.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli M718] gi|331075267|gb|EGI46565.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6) (PBP-6) [Escherichia coli H591] Length = 407 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|85058899|ref|YP_454601.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str. 'morsitans'] gi|84779419|dbj|BAE74196.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str. 'morsitans'] Length = 396 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 92/271 (33%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D +G V+AE D +PASLTK+M++YV+ +K K T +T Sbjct: 33 AAPEINARAYILMDYQSGKVLAEANADQRLDPASLTKIMSSYVIGQAMKAGKIHPTDKVT 92 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 I K+A S K G +T+D+ K ++++S ND ++A+A+ + ++ FV Sbjct: 93 IGKDAWATGNPVLRGSSLMFLKPGEQVTVDDLNKGIVIQSGNDASIALADHVAGSQDAFV 152 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 +N ++ LGL THF+ HG+ G Y+TARDMAILS + + P + K Sbjct: 153 SLINQYAQALGLKNTHFLTVHGLDAEGQYSTARDMAILSQALIRNVPDEYALHKEKEFTY 212 Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 K PN N + + L DG+KTG+T +G N+VASA LI+V+LGA R + Sbjct: 213 NKIKQPNRNRLLWSGNLTVDGVKTGYTSGAGHNLVASATDNGMRLISVVLGAPTDGIRFR 272 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF + + F QQ + Sbjct: 273 ESEKLLTWGFRFYETVMPVPK-DRPFTQQRV 302 >gi|91209873|ref|YP_539859.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli UTI89] gi|117623019|ref|YP_851932.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli APEC O1] gi|237707198|ref|ZP_04537679.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA] gi|91071447|gb|ABE06328.1| penicillin-binding protein 6 precursor [Escherichia coli UTI89] gi|115512143|gb|ABJ00218.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Escherichia coli APEC O1] gi|226898408|gb|EEH84667.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA] gi|315287329|gb|EFU46740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|323953500|gb|EGB49366.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323958128|gb|EGB53837.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] Length = 407 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|332799334|ref|YP_004460833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] gi|332697069|gb|AEE91526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] Length = 388 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 15/346 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +++I + ML I ++ A K P L+D TG ++ E PAS+TK+MT Sbjct: 11 ILLITLLMLFIIISPVAAAPQLDIKSPSAILMDAGTGTILFEKNSHEKMEPASITKIMTM 70 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + F L+ K L+ + IS+ A S G TL+ LK +++ SAND ++A Sbjct: 71 IIAFEALESGKVSLSDIVRISERAWGTGGSQVFLAPGEEQTLETLLKCIVIASANDASMA 130 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK---- 178 +AE + + + FV+ MN+ +K LG+S T+F+N HG+ HYTTA D+A++S + Sbjct: 131 VAEHIGGSVEGFVKLMNDKAKQLGMSNTNFVNPHGLSSPEHYTTAHDIALMSRELVKYPL 190 Query: 179 --TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 ++ Y + + NTN +G + G DG+KTGF +G +A +GD Sbjct: 191 FFNWSTIWIDYLEHTDKKRDATMLANTNKLLGKYEGLDGLKTGFHNKAGHCFAGTARRGD 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI-------IKDFYQQNLSNEV 289 LI+V+L A + R + + LL GF + K + ++ + +N++ V Sbjct: 251 FRLISVVLNADTSSQRFEDTVKLLDYGFGHFDSIKVVEKGSIQKILPVEKGHLENVNVIV 310 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 P + KE K D TLL + K Sbjct: 311 PEDVSLLIEKGKEGEINTKVDVPDKLCAPLKKDHAVGTLLIEQGGK 356 >gi|330505013|ref|YP_004381882.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina NK-01] gi|328919299|gb|AEB60130.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina NK-01] Length = 391 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 8/293 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L ++A + + A Y L+D +G+V+ EN D PASLTKLMTAY+ Sbjct: 14 LTLLAAPLAMANQQVVPAAPQLAAKSYVLMDAASGNVLVENNADQRLPPASLTKLMTAYI 73 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119 ++ K +TIS++A S S T+D+ L +I++S ND Sbjct: 74 ATLEIRNGKIGEQDLVTISEHAWRTGGAASGGSTMFLPLNSQATVDDLLHGIIIQSGNDA 133 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 ++AIAE + +E F MN T++ LG+ +HFMNA G+ HY++A DMAIL+ I Sbjct: 134 SIAIAEYIAGSEDAFADMMNATAERLGMKNSHFMNATGLPHPEHYSSAHDMAILARAIIN 193 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + ++ + K K PN N + DG+KTG T +G+ +VASA++ + Sbjct: 194 EDAEHYAIYSQKEFLWNNIKQPNRNLLLWRDRTVDGLKTGHTSEAGYCLVASAVRDGARM 253 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEV 289 I + G R + LL+ GF R +K + + + +N+V Sbjct: 254 ITSVFGTDSEQARAAETQKLLTYGFRFFESRTFYQKGTELAQATVWKGATNQV 306 >gi|288934486|ref|YP_003438545.1| beta-lactamase [Klebsiella variicola At-22] gi|290508688|ref|ZP_06548059.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|288889195|gb|ADC57513.1| Beta-lactamase [Klebsiella variicola At-22] gi|289778082|gb|EFD86079.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 387 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 17/340 (5%) Query: 1 MRQFLVIIAMAMLSNI-------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M+ L I + S++ FP + + L+D TG V+ NP Sbjct: 1 MKGRLFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YVV + + +T+ K+A S K G +++ + Sbjct: 61 ASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LIV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A Sbjct: 121 SRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLQDTHFETVHGLDAPGQHSSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+LS I P H + K L G N N + + DG+KTG T +GF Sbjct: 181 YDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGF 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N++ASA+ G + LIAV++GA R + +A LL G N + + K ++ Sbjct: 241 NLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWY 300 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + I T ++ + + ++ K + +D + + Sbjct: 301 GDKEQIK---LGTDQDFWLALPKAEVSRIKAKYVLDKKDL 337 >gi|205353205|ref|YP_002227006.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272986|emb|CAR37933.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628291|gb|EGE34634.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 390 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|41218|emb|CAA29775.1| unnamed protein product [Escherichia coli K-12] Length = 400 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNEDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|156934665|ref|YP_001438581.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter sakazakii ATCC BAA-894] gi|156532919|gb|ABU77745.1| hypothetical protein ESA_02500 [Cronobacter sakazakii ATCC BAA-894] Length = 410 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 142/276 (51%), Gaps = 7/276 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++I+++ P A + L+D ++G V+AE D +PASLTKLMT+YV Sbjct: 26 FLLISLSTAHAADPIAPAAPDVDARAWILMDYHSGKVLAEGNADEKLDPASLTKLMTSYV 85 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V LK K L +T+ K+A S K G +++ + K +I++S ND Sbjct: 86 VGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLNKGVIIQSGND 145 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 ++AIA+ + ++ FV MN +K LGL+ T F HG+ G ++TARDMA+L + Sbjct: 146 ASIAIADYVAGSQDAFVSLMNGYAKRLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALI 205 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + PN N + + + DGMKTG T +G+N+VASA QGD Sbjct: 206 HDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKTGTTAGAGYNLVASATQGDM 265 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V+LGA R + S LL+ GF I Sbjct: 266 RLISVVLGAKTDGIRFRESEKLLTWGFRFFETVTPI 301 >gi|167551002|ref|ZP_02344757.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168242129|ref|ZP_02667061.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168466288|ref|ZP_02700158.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818250|ref|ZP_02830250.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445713|ref|YP_002041329.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448664|ref|YP_002046110.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|207857497|ref|YP_002244148.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194404376|gb|ACF64598.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406968|gb|ACF67187.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631235|gb|EDX49795.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324074|gb|EDZ11913.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338413|gb|EDZ25177.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345154|gb|EDZ31918.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709300|emb|CAR33640.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 390 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|16765392|ref|NP_461007.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180641|ref|YP_217058.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990972|ref|ZP_02572071.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168259641|ref|ZP_02681614.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197251570|ref|YP_002147019.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224583442|ref|YP_002637240.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|585694|sp|P37604|DACD_SALTY RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 6B; Short=PBP-6B; Flags: Precursor gi|16420593|gb|AAL20966.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128274|gb|AAX65977.1| DD-carboxypeptidase, penicillin-binding protein 6b [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|197215273|gb|ACH52670.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205330511|gb|EDZ17275.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350814|gb|EDZ37445.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467969|gb|ACN45799.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247276|emb|CBG25100.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994112|gb|ACY88997.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158623|emb|CBW18134.1| penicillin-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913053|dbj|BAJ37027.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224707|gb|EFX49770.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715112|gb|EFZ06683.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130385|gb|ADX17815.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988997|gb|AEF07980.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 390 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|82776165|ref|YP_402512.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella dysenteriae Sd197] gi|81240313|gb|ABB61023.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197] Length = 400 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLAWGFRFFETVTPI 291 >gi|297616714|ref|YP_003701873.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297144551|gb|ADI01308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 381 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 6/274 (2%) Query: 2 RQFLVIIAMAMLSNI-FPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L ++A + ++ FP + + Y L+D ++G V+ PAS+TK Sbjct: 5 KRLLWLMAWVLFFSLAFPTTAWGAVVDVEADSYVLMDADSGKVLLAKNEHKRLPPASMTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT + L + K L + S+NA + S + G MT ++ + + V SAND Sbjct: 65 LMTLILAMEDLYKGKVDLKEKVVASENAWKLGGSQIYLEPGEEMTFEDMVIAIAVGSAND 124 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE L + ++FV+ MN +K L L THF+NA+G+ HY++A D+A+++ R Sbjct: 125 ACVAVAEHLDGSHEEFVKRMNAKAKELRLKDTHFVNAYGLPDPDHYSSAYDLALMA-RYA 183 Query: 179 TDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 +P+ + + IK ++ K NTN + + G DG KTG+T + F +V++A + Sbjct: 184 LCYPKLLEFTSIKEYNLRQGEFKLYNTNKLLWHYPGTDGFKTGWTNEAKFCLVSTAKRNG 243 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 LI V++ + + + S L + GF R Sbjct: 244 LRLICVVMASPQKGGNFRDSMKLFNYGFAKYAYR 277 >gi|284009241|emb|CBA76342.1| penicillin-binding protein [Arsenophonus nasoniae] Length = 418 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 91/310 (29%), Positives = 148/310 (47%), Gaps = 16/310 (5%) Query: 3 QFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++I ++ S +F + A Y L+D +G V+AE D +P Sbjct: 27 SLILITSLIFSSTLFANSNNAMQINVIPSAPNIDAEAYILIDYYSGKVLAERNADQRRDP 86 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTK+MT+Y++ +K K + +TI +NA S K G +++ Sbjct: 87 ASLTKMMTSYIIGQTIKAGKISMNDIVTIDENAWATGNPVFKGSSLMFLKPGDRVSVSQL 146 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ + ++S ND VA+AE + E FV+ MN+ + LGL THF+ HG+ G Y++A Sbjct: 147 IRGINLQSGNDACVAMAEYVAGDEASFVKLMNDNVQRLGLKNTHFLTVHGLDADGQYSSA 206 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMA++ + D P+ ++ K + N N + L DG+KTG T A+G+ Sbjct: 207 RDMALIGQALIRDVPEEYAIYKEKEFTFNKIRQLNRNGLLWDKSLNVDGIKTGHTSAAGY 266 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N+VASA +G+ LI+VILG R+ S LL+ GF K + ++ Q Sbjct: 267 NLVASATEGNMRLISVILGGHSSKGRDAESKKLLTWGFRFFETVKPLQGGMEFASQPVWF 326 Query: 287 NEVPNISEEV 296 + + Sbjct: 327 ANTDQVKLGI 336 >gi|200388770|ref|ZP_03215382.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605868|gb|EDZ04413.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 390 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|168229376|ref|ZP_02654434.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472812|ref|ZP_03078796.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459176|gb|EDX48015.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335852|gb|EDZ22616.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 390 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|198246188|ref|YP_002216147.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940704|gb|ACH78037.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623893|gb|EGE30238.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSSKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|320177827|gb|EFW52813.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] gi|332088903|gb|EGI94015.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82] Length = 400 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DG+KTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|238913456|ref|ZP_04657293.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHNGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|257439156|ref|ZP_05614911.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257198407|gb|EEU96691.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 412 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 129/241 (53%), Gaps = 2/241 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L++ TG V+ E PD AS+TKLMT + F ++ K L TP+ +S++A Sbjct: 65 AAILMEPETGRVLYEKAPDERMPIASITKLMTLLLTFEAIRGGKLTLDTPVPVSEHAYHM 124 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G TLD L+ + V SAND AVA+AE + +E FV+ MN + LG++ Sbjct: 125 GGSQIWLEPGEQFTLDEMLRAICVSSANDAAVAVAELVGGSEPVFVEQMNARAAELGMTN 184 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV 207 T F NA G+ GH +TARD+AILS + P+ +HY I ++ + NTN + Sbjct: 185 TTFRNACGLDTEGHLSTARDVAILSRYLLNTCPELLHYTGIWTDSLRNGQTQLVNTNKLL 244 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G G+KTG T +G I ASA + +LIAV+LG+ R + +LL GF N Sbjct: 245 RRYSGITGLKTGTTSGAGVCISASATRDGLTLIAVVLGSPSSADRFHSATTLLDYGFANY 304 Query: 268 T 268 Sbjct: 305 A 305 >gi|283832568|ref|ZP_06352309.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291072237|gb|EFE10346.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 153/337 (45%), Gaps = 34/337 (10%) Query: 2 RQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R+ + ++ +S N+ F + L+D TG ++ NPA Sbjct: 5 RRLFIAASLFAMSFSPAWATNVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRNPA 64 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNAL 108 SLTKLMT YVV + K+ T +T+ ++A S K+G +++ + Sbjct: 65 SLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLS 124 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + LIV S ND VA+A+ + + +FV MNN ++ L L THF HG+ G +++A Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSSAY 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFN 227 D+A+LS I P + H + K L G N N + + DG+KTG T +GFN Sbjct: 185 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 244 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 ++ASA+ G + LIAV++GA R + LL G N + +I Y Sbjct: 245 LIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGTERIWYG 304 Query: 277 IK---------DFYQQNLSNEVPNISEEVCTTQKEII 304 K DF+ EV NI + +KE++ Sbjct: 305 DKEKISLGTEQDFWMALPKAEVANIKAKYVLDKKELV 341 >gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] gi|151281110|gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11) [Janthinobacterium sp. Marseille] Length = 382 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 112/336 (33%), Positives = 172/336 (51%), Gaps = 15/336 (4%) Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L IA +LS + F + T + LLD + V+A N PD PASLTK Sbjct: 1 MKKLLAAIAATVLSLSSAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASLTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKLLIVKSA 116 LMTAYV F+ +++KK L ITIS NA + PS+ + + +++ L LIV+S Sbjct: 61 LMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQSG 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVAIAE++ TE FV MN ++ +G+ +THF N HG+ +Y+TARD+++L+ Sbjct: 121 NDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLASH 180 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234 + D P++ + K K PN N + DGMKTG+T +G+ ++++A + Sbjct: 181 LINDHPEFYKIYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAKRPN 240 Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN- 291 G++ LI+V+LG + R + S LL+ GF N D K+ + N+ N Sbjct: 241 GTGERRLISVVLGTISDQARAQESQKLLNWGFLNF-DTVKLYAKNEPIATPNVWKGTQNS 299 Query: 292 -----ISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 + T K + N + KD ID Sbjct: 300 IKIGFTRDVYITVPKGVANTMKPVLARKDPLVAPID 335 >gi|320086495|emb|CBY96266.1| DD-carboxypeptidase, penicillin-binding protein 6B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDHAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|332091086|gb|EGI96176.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 155-74] Length = 400 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DG+KTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|288962599|ref|YP_003452893.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288914865|dbj|BAI76349.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 451 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 162/336 (48%), Gaps = 5/336 (1%) Query: 1 MRQFLVIIAM-AMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +R+ I+++ A + + P +++++ + L+D ++G V+ + P+S+TK Sbjct: 77 IRRLAGILSLVAAVLSATPAMALSQPDTAARQAYLVDLSSGAVLLDKNGAERMAPSSMTK 136 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTAY+ + L + L T IS+ A + S K GST+ +++ L+ L++ S ND Sbjct: 137 MMTAYLTYDALVHGRTTLDTSFPISQTAWKMGGSRMFLKLGSTVRVEDLLRGLLIDSGND 196 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AVA+AE L +E F MN ++ LG++ +HFMNA G GHYTTARD+AIL+ R+ Sbjct: 197 AAVALAEGLAGSESAFAGLMNAKARELGMADSHFMNASGWPDPGHYTTARDLAILATRLI 256 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFPQ+ HY + G + N N + + DG+KTG T G+ + AS + + Sbjct: 257 RDFPQFYHYESERNFTWNGIRQGNRNPLLYHPVSVDGIKTGHTEVGGYGLTASGERNGRR 316 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNEVPNISEE 295 L+ V+ G +RN LL + + +K + + + VP + Sbjct: 317 LVLVVNGLPSPQSRNDEPTRLLDWAWNSFKLYPLLRKGELVEQAPVWMGAEDSVPVTVAD 376 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 T + N+ A E + ++ Sbjct: 377 DVTVTMAPADRNSLHVVATLAEPLPSPVRRGDVVGR 412 >gi|161502774|ref|YP_001569886.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864121|gb|ABX20744.1| hypothetical protein SARI_00825 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAINAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAESSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +K++ Sbjct: 303 YGDREKIALGAEQDFWMALPKAEIPHIKAKYVLDKKDL 340 >gi|114775714|ref|ZP_01451282.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1] gi|114553825|gb|EAU56206.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1] Length = 334 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 79/266 (29%), Positives = 131/266 (49%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 L+ + + ++D +G +IA + D PASLTK+MT Y+ F LK+ Sbjct: 25 LAVHAAAWPESPRLDAKAWAMIDARSGQIIASHNADEQLPPASLTKMMTLYLAFEALKQG 84 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + L TP+++S+ A + S T+ + + S ND +A+AE + +E Sbjct: 85 RLSLDTPVSVSQKAWKIGGSTMFLDPRMHPTVGQLIHGIATYSGNDACIALAEHMEGSES 144 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F + MN ++ LG+ +HF+NA G GHY++A DMAIL + DFP+ F + Sbjct: 145 TFAERMNAKARELGMLHSHFVNATGFPTEGHYSSAGDMAILGAALWRDFPERYKLFDERD 204 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G+ PN N + T ADG+KTG T +G+ +V SA + + +A + G R Sbjct: 205 FTYDGRTQPNRNRLLWTMSEADGIKTGHTQEAGYCLVGSAEKANTRFVAAVFGTKSDRAR 264 Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK 278 + + +LL GF + ++ I+ Sbjct: 265 AQETRTLLRFGFNHFVTKRPAEREIR 290 >gi|256021090|ref|ZP_05434955.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella sp. D9] Length = 400 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|67906493|gb|AAY82600.1| predicted penicillin-binding protein 6 precursor [uncultured bacterium MedeBAC35C06] Length = 380 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 144/275 (52%), Gaps = 2/275 (0%) Query: 1 MRQFLVIIAMAMLSNIFP--FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L ++ ++ F++ A L Y L++ TG VIAE D PAS+TK Sbjct: 1 MKKLLTLLLFTSCLELYSQSFVAPAPKLDLKAYILIEPQTGTVIAEYNSDLHVEPASMTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT YVV + L + IS+ A S + G +++++ LK +I++S ND Sbjct: 61 IMTGYVVADQIGNDLINLNDSVLISERAWRMGGSKMFIEAGKRVSVEDLLKGVIIQSGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE TE+ FV MN +++LG++ T F+N+ G+ GHY++A+D+A L+ Sbjct: 121 ASVALAEYSGGTEEGFVDLMNAYAQSLGMNNTTFLNSTGLPAEGHYSSAKDLAYLTSNFI 180 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FP+ ++ K E K N N + +DG+KTG T ++G+ +V SA +G Sbjct: 181 NKFPEIYSLYKEKSFEFNSIKQLNRNKLLWRDDSSDGVKTGHTESAGYCLVGSAKRGGMR 240 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI V+ G+ R + LL GF + ++ + Sbjct: 241 LITVVAGSSSDKKRFDDTQRLLEYGFRFFSTQEVL 275 >gi|242239720|ref|YP_002987901.1| beta-lactamase [Dickeya dadantii Ech703] gi|242131777|gb|ACS86079.1| Beta-lactamase [Dickeya dadantii Ech703] Length = 401 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 167/359 (46%), Gaps = 25/359 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASL 56 + ++ A +F S AE P + L+D +G V+AE D +PASL Sbjct: 9 RVTTVVMAASFLTLFSPSSYAEQPSAPPQIDAKAFILMDATSGRVLAELNADERLDPASL 68 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKL 110 TK+MT+YVV +K K +T+ +A S K G + + + K Sbjct: 69 TKIMTSYVVGQAIKAGKIKPDDRVTVGSDAWANGNPSLRGSSLMFLKPGDQILVSDLNKG 128 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++++S ND ++A+A+ + +++ F+ MN + +LGLS +HF+ HG+ G Y+TARDM Sbjct: 129 MVIQSGNDASIALADYVAGSQQAFISLMNQYAASLGLSNSHFLTVHGLDTPGQYSTARDM 188 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIV 229 + L+ + D P K PN N + + L DG+KTGFT +G+N+V Sbjct: 189 SRLTQALIRDLPDEYALHSEKAFTFNKINQPNRNRLLWSATLRVDGVKTGFTHGAGYNLV 248 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----------DRKKINYIIK 278 +SA++G LIAV+LG+ R + S LL+ GF +++ + ++ Sbjct: 249 SSAVEGGTRLIAVVLGSSSDAIRFRESEKLLAWGFRFFETVTVVRTDEPFTTQRVWFGVE 308 Query: 279 DFYQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + ++ + + + K N + +A K+ + TL + ++ Sbjct: 309 NRVRLGVTQDAAVTVPKGQVKNVKANFTLNARPLQAPLKQGQVVGSLDFTLDGVVVGQR 367 >gi|332286510|ref|YP_004418421.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] gi|330430463|gb|AEC21797.1| putative penicillin-binding protein precursor [Pusillimonas sp. T7-7] Length = 418 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/277 (33%), Positives = 143/277 (51%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + LD N+G +IA D P PASLTKLM+AYVVF L+ + L + + Sbjct: 68 APALTARAWMTLDVNSGQIIAAQNLDEPVEPASLTKLMSAYVVFDALENNRLSLEQKVPV 127 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + S K S +++D+ L+ +IV+S ND VA+AE++ +E FV MN + Sbjct: 128 SEKAWKTEGSRMFIKVNSQVSVDDLLQGVIVQSGNDATVALAEAVAGSEDAFVTIMNEEA 187 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 GL THF N+ G+ H TTARD+ L+ + TDFPQY+HY+ K K N Sbjct: 188 ARQGLRDTHFENSTGLPGPTHLTTARDLGTLAKNLVTDFPQYLHYYSQKEFTYNNIKQNN 247 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + + DG+KTG T ++G+ +V +A++ + +++VI+GA R + S LL+ Sbjct: 248 RNRLLWSDPTVDGLKTGHTQSAGYCLVTTALRDGRRVVSVIVGAASDAARTENSLKLLNW 307 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 F N K + + EV + T Sbjct: 308 SFQNFDTIKLYDNTKPAVTARVWEGEVETVGLGSTTP 344 >gi|291616858|ref|YP_003519600.1| DacC [Pantoea ananatis LMG 20103] gi|291151888|gb|ADD76472.1| DacC [Pantoea ananatis LMG 20103] gi|327393284|dbj|BAK10706.1| penicillin-binding protein 6 precursor DacC [Pantoea ananatis AJ13355] Length = 400 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 24/354 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L++ MA+ + P A + L+D +G V+ E+ D +PASLTK+MT+ Sbjct: 17 SLLLVAPMAVFAEQAP---AAPQIDAKAWILIDYASGKVLTESNADQRLDPASLTKMMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YVV +K K +T+ ++A S K G + + K ++++S Sbjct: 74 YVVGQAIKSGKIKPDDMVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSG 133 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA++ Sbjct: 134 NDACIALADYVAGSQDSFIGLMNNYVKALGLKNTHFMTVHGLDADGQYSTARDMALIGQA 193 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K + N N + + L DG+KTG T +G N+VASA +G Sbjct: 194 LIRDVPEEYALNKEKEFTFNNIRQMNRNRLLWSSNLKVDGIKTGHTSGAGNNLVASATEG 253 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL---------- 285 D LI+V+LG R + S LL+ GF I F QQ + Sbjct: 254 DMRLISVVLGTASDAIRFRESEKLLTWGFRFFETVTPIKAG-APFAQQRVWFGEHNQVNL 312 Query: 286 ---SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + I + K + + EA K++ + L I ++ Sbjct: 313 GVEKDAALTIPKGQMKNLKASYSLTSPQLEAPLKKNQVVGTIDFQLDGKTIEQR 366 >gi|194433152|ref|ZP_03065434.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae 1012] gi|194418649|gb|EDX34736.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae 1012] Length = 403 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DG+KTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|268590416|ref|ZP_06124637.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] gi|291314330|gb|EFE54783.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] Length = 403 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 9/280 (3%) Query: 4 FLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L+ +A + FP SI A Y L+D N+G V+AE+ D +PASLTK+MT Sbjct: 20 LLMTANIANANETFPNTSIPAAPAIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMT 79 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKS 115 +YV+ +K K +T+ +A S K G +++ + + ++S Sbjct: 80 SYVIGQAIKSGKIGENDIVTVGNDAWATGNPVFKGSSLMFLKPGDRVSVSQLTRGINLQS 139 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + + FVQ MN LGL THF HG+ G Y++ARDMA++ Sbjct: 140 GNDACVAMADYIAGDQANFVQLMNGYVNKLGLKNTHFQTVHGLDAEGQYSSARDMALIGQ 199 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ ++ K + N N + L DG+KTG T A+G+N+VASA + Sbjct: 200 ALVRDVPEEYAIYKEKEFTFNNIRQTNRNGLLWDKSLTVDGIKTGHTNAAGYNLVASATE 259 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GD LI+V++G R+ S LL+ GF K + Sbjct: 260 GDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKPLQ 299 >gi|237732061|ref|ZP_04562542.1| DacD [Citrobacter sp. 30_2] gi|226907600|gb|EEH93518.1| DacD [Citrobacter sp. 30_2] Length = 421 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 99/339 (29%), Positives = 153/339 (45%), Gaps = 35/339 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A + P + + P + L+D TG ++ N Sbjct: 34 LKRRLFIAASLFAMSFSPAYATDVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRN 93 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + K+ T +T+ ++A S K+G +++ + Sbjct: 94 PASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 153 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MNN + L L THF HG+ G +++ Sbjct: 154 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYVQKLNLRDTHFETVHGLDAPGQHSS 213 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P + H + K L G N N + + DG+KTG T +G Sbjct: 214 AYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 273 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KIN 274 FN++ASA+ G + LIAV++GA R + LL G N + +I Sbjct: 274 FNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGIERIW 333 Query: 275 YIIK---------DFYQQNLSNEVPNISEEVCTTQKEII 304 Y K DF+ EV NI + +KE++ Sbjct: 334 YGDKEKISLGTEQDFWMALPKAEVANIKAKYVLDKKELV 372 >gi|256821559|ref|YP_003145522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM 16069] gi|256795098|gb|ACV25754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM 16069] Length = 389 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 6/255 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D +TG +I EN D PASLTK+MT+Y++ L + + + +S Sbjct: 34 PNVDARSYLLMDYDTGQIIMENNADQKLPPASLTKMMTSYIIGDELHKGNLSMDDKVLVS 93 Query: 84 KNASEY-----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +NA S + + +++ + +I++S ND ++A+AE + TE F M Sbjct: 94 ENAWAQNPKLKGGSLMFIEVNKYVRVEDLYRGIIIQSGNDASIAMAEHIAGTEGAFADLM 153 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + LG+ THF N+ G GH TTARD+AIL+ + DFP+ + + G Sbjct: 154 NQYAAKLGMKDTHFENSTGWPAEGHVTTARDLAILARALIRDFPEDYKLYAEREFTYNGI 213 Query: 199 KYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K N N +G L DG+KTG T +G+ +V+SA + D LI+V++G R + Sbjct: 214 KQANRNGLLGDPTLNVDGLKTGHTEEAGYCLVSSAEKEDMRLISVVMGTDSEAERAAETR 273 Query: 258 SLLSMGFYNKTDRKK 272 LL+ GF T+ K Sbjct: 274 KLLNFGFRFYTNIKP 288 >gi|332282314|ref|ZP_08394727.1| penicillin-binding protein 6 [Shigella sp. D9] gi|332104666|gb|EGJ08012.1| penicillin-binding protein 6 [Shigella sp. D9] Length = 407 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|308048532|ref|YP_003912098.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799] gi|307630722|gb|ADN75024.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799] Length = 387 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 21/330 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 R A+ M +++ S+ A T Y L+D TG V+AEN PASLTK Sbjct: 6 RTLATAAAVLMSASVTAAPSVIPNAPTVAAGSYVLMDFKTGRVLAENNAYEQRAPASLTK 65 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSN-STFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ L T + IS NA +P S+ + G + L + + ++V+S Sbjct: 66 MMTSYVLGQELNRGNVRETDMVKISNNAWAKNFPGSSVMWIEVGKEVNLMDLYRGMVVQS 125 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VAIAE + TE + MN S LG++ THF NAHG+ TTA DMAIL Sbjct: 126 GNDACVAIAEHVAGTESAYTDLMNAWSGQLGMADTHFANAHGLDATDQVTTAYDMAILGR 185 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 I D PQY + +K G + N N + L DGMKTG T +G+N+V+SA + Sbjct: 186 AIIRDIPQYYPLYSLKEFTFNGIRQHNRNGLLWDRSLNVDGMKTGHTNGAGYNLVSSATK 245 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY-----------NKTDRKKINYIIKDFYQQ 283 GD LIAV++GA +R S LL+ GF ++ +KI Y K + Sbjct: 246 GDMRLIAVVMGAKSPQSREAESKKLLNYGFRFFETVTPYKAGDEFTSQKIWYGDKSEVRL 305 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 + + P + Q + + N ++ E Sbjct: 306 GVLEDTPVT---IYRGQSDNLKANFELSEE 332 >gi|152976485|ref|YP_001376002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025237|gb|ABS23007.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 392 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 168/370 (45%), Gaps = 35/370 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL------------PYYTLLDTNTGHVIAENYPD 48 M++ I+ ML +S A++ K +++ +TG V+ E P+ Sbjct: 1 MKRVFGILVCCMLLLSHTSVSFAKSEKAIEETKPKLAEQASSAIVIEQDTGKVLFEKNPN 60 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108 PAS+TK+MT ++ +++ K L + S++A+ S + G MT++ L Sbjct: 61 EKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRTSEHAASMGGSQIFLEPGEEMTVNEML 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K + + S ND +VA+AE + +E+ FV MN +K LGL THF N G+ HY+TA Sbjct: 121 KGIAIASGNDASVAVAEHIAGSEEGFVNMMNKRAKELGLKNTHFQNPTGLPAKNHYSTAI 180 Query: 169 DMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 DMAI++ + +P Y ++ K NTN V + G DG+KTGFT Sbjct: 181 DMAIIAKELMK-YPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTGFTTE 239 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------K 272 + + + ASA + +I+V++GA RN LL F T +K + Sbjct: 240 AKYCLTASAEKNGMRVISVVMGAPTSKERNSQVTKLLDYAFGQYTTKKLYKRGEKIQTVQ 299 Query: 273 INYIIKDFYQQNLSNEVPNI---SEEVCTTQKEII---NYNTQMKEAKDKESHFIDFEKI 326 + K+ ++ V + E++ +KEII +K+ + I ++ Sbjct: 300 VGKGKKEKVDLVAADNVSLLMKKGEDMDKIKKEIIAEKKVKAPIKKGDALGTLVITKDRE 359 Query: 327 TLLKNKITKK 336 LLK I K Sbjct: 360 VLLKQTIVAK 369 >gi|197264724|ref|ZP_03164798.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242979|gb|EDY25599.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 390 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 35/338 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVHD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLRDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIW 302 Query: 279 -------------DFYQQNLSNEVPNISEEVCTTQKEI 303 DF+ E+P+I + +KE+ Sbjct: 303 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKEL 340 >gi|163857632|ref|YP_001631930.1| penicillin-binding protein precursor [Bordetella petrii DSM 12804] gi|163261360|emb|CAP43662.1| penicillin-binding protein precursor [Bordetella petrii] Length = 371 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 7/268 (2%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M S +A + LLD +G +A D PASLTK+MTAY+VF L++ Sbjct: 1 MASLASAQAQVAPPVTAKAWMLLDATSGQEMASFNADTRVEPASLTKVMTAYLVFQALRD 60 Query: 72 KKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + +T+S A + P S + G +++++ L L+V+S ND A+ +AE++ Sbjct: 61 GRLSTQQLVTVSTRAWKVAPGSSKMFLEPGKRVSVNDLLFGLLVQSGNDAAIVLAEAVSG 120 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF- 188 + + FVQ MN + +GL THF + HG+ G Y+TARD+A+L+ R+ D+P + Sbjct: 121 SVEAFVQRMNQQAAQMGLRDTHFASPHGLPDPGTYSTARDLALLARRLVRDYPDLYKTYD 180 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD----QSLIAVIL 244 + PN N + DG+KTG T A+G+ ++ASA + D + LI+V++ Sbjct: 181 SARTFTYNNISQPNRNRLLWLDPSVDGLKTGHTDAAGYCLIASAERPDGQSRRRLISVVM 240 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G R + S LL+ GF N K Sbjct: 241 GTASDKLRTEESRVLLNWGFQNFKTIKL 268 >gi|302390892|ref|YP_003826712.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302202969|gb|ADL11647.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 386 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 83/339 (24%), Positives = 154/339 (45%), Gaps = 6/339 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++I+ ++ L + + A + L++ TG V+ PAS+TK+MT Sbjct: 10 IVIILVLSSLLVVASPVLAAFDIEAESAILMEAETGQVLFTKNVTEELPPASITKIMTLL 69 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + + L + S+ AS S M ++ L+ + + SAND VA+ Sbjct: 70 LAMEAIDSGQMNLDDTVIASEFASSMGGSQIYLAPKEKMKVETLLESIAIASANDACVAL 129 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDF 181 E + + + F++ MN + LGL T+F+N+ G+ HY++ARD+AI+S + Sbjct: 130 GEHIAGSYQNFIKMMNERASELGLKDTNFINSTGLPTDDGAHYSSARDIAIMSRELINKH 189 Query: 182 PQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + + I +I+ NTN + + GADG+KTG+T +G+ + A+A + L Sbjct: 190 PKVLDWTSIWIDKIRNGEFTLYNTNDLINYYPGADGLKTGWTDKAGYCLAATAKRDGMRL 249 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 I+V++ R + SA LL+ GF +K + + E + E Sbjct: 250 ISVVMKTDSEEARMEESAKLLNYGFSRFDLKKVVKQGEDVGKIEVKEGEELEVKVETAED 309 Query: 300 QKEIINYNTQMKEAKDKESHFID--FEKITLLKNKITKK 336 K ++ N + E + + + EK ++ I K+ Sbjct: 310 LKLVLKSNAEDLEREIELEKEVTAPIEKGEIVGKLIIKQ 348 >gi|206579571|ref|YP_002237570.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|206568629|gb|ACI10405.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] Length = 389 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 17/340 (5%) Query: 1 MRQFLVIIAMAMLSNI-------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++ L I + S++ FP + + L+D TG V+ NP Sbjct: 3 LKGRLFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YVV + + +T+ K+A S K G +++ + Sbjct: 63 ASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDL 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LIV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A Sbjct: 123 SRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSA 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+LS I P H + K L G N N + + DG+KTG T +GF Sbjct: 183 YDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGF 242 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N++ASA+ G + LIAV++GA R + +A LL G N + + K ++ Sbjct: 243 NLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWY 302 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + I T ++ + + ++ K + +D + + Sbjct: 303 GDKEQIK---LGTDQDFWLALPKAEVSRIKAKYVLDKKDL 339 >gi|114566158|ref|YP_753312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337093|gb|ABI67941.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 381 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 14/322 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 R ++ M+ I + K Y L+D ++G V+ PAS+TK Sbjct: 5 RSIAWLVLWVMVFIIAAPTRLEAEVVEVKAESYVLMDADSGKVLLAKNEHKQLAPASMTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT + L+E K L + S+NA + S + G M+ ++ L + V SAND Sbjct: 65 LMTLILAMEALEEGKVTLKDKVVTSENAWKMGGSQIYLEPGEQMSYEDMLIAIAVGSAND 124 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE L T + FV MN+ +K LGL THF+N++G+ HYT+A DMA++ Sbjct: 125 ACVAVAEHLEGTHQNFVDKMNHKAKMLGLKNTHFINSYGLSAPKHYTSAYDMAVIGREAL 184 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 P+ + Y IK +++ ++ NTN + + GADG KTG+T + + + +A + Sbjct: 185 -AHPKILEYSSIKEYDLRQGEFKLFNTNKLLWWYQGADGFKTGWTDEAKYCLAGTAKRDG 243 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ---QNLSNEVPNIS 293 LI+V++ + +++ + S LL+ GF + I + + +V ++ Sbjct: 244 LRLISVVMASPEKHGNFRDSMQLLNYGFARYAFKSLIGQGKSCGIVKIGKGIEEQVEVLA 303 Query: 294 EE-----VCTTQKEIINYNTQM 310 EE V +++ IN T + Sbjct: 304 EEEVGCTVIKGEEKKINSKTSL 325 >gi|197104762|ref|YP_002130139.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum HLK1] gi|196478182|gb|ACG77710.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum HLK1] Length = 417 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 99/273 (36%), Positives = 151/273 (55%), Gaps = 2/273 (0%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P+ +A+T+ ++D TG V+ EN D P PAS+TK+MT Y+ F L K L Sbjct: 31 IPYQMLAQTSSKYAAIVVDAKTGEVLYENRADSPRYPASITKVMTLYLTFEALASGKIDL 90 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 + S A+ PP+ + G ++++D A+K L KSAND AVA+AE L TE++F Sbjct: 91 DDRVVFSPRAAAQPPTKLGVRAGDSISVDEAMKALATKSANDAAVALAEKLAGTEQRFAA 150 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M ++ LG++ T+F NA G+ +TARD+AILS + D+PQY F ++ + Sbjct: 151 LMTLRARELGMTDTNFANASGLPDSRQVSTARDIAILSRAVMRDYPQYYKLFSLQYFNFR 210 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G+ N N + G DG+KTGF ASGFN+ ASA++ + LIAV+LG R+ + Sbjct: 211 GQTMRNHNGLLHRMDGVDGLKTGFINASGFNLAASAVRDGRRLIAVVLGGPTSRARDNNA 270 Query: 257 ASLLSMGFYNKTDRKKIN--YIIKDFYQQNLSN 287 SLL GF R + + + F++ ++ Sbjct: 271 ESLLLTGFEVLDRRARGEDIQVAQSFFESPMTG 303 >gi|251789994|ref|YP_003004715.1| beta-lactamase [Dickeya zeae Ech1591] gi|247538615|gb|ACT07236.1| Beta-lactamase [Dickeya zeae Ech1591] Length = 402 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 12/283 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLT 57 + V+ A +L + L +T P + L+D+ +G V+AE+ D +PASLT Sbjct: 11 RHAVVAATGVLMVVSSGLRAEQTPPPPQIDAKAFILIDSASGRVLAESNADTRLDPASLT 70 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G +++ + K + Sbjct: 71 KIMSSYVIGQAIKVGKIKPEDKVTVGKDAWATGNPSLRGSSLMFLKPGDQISVSDLNKGM 130 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN + NLGL+ THF+ HG+ G Y+TARDMA Sbjct: 131 VIQSGNDASIALADYVAGSQDAFVSLMNQYALNLGLTNTHFLTVHGLDTPGQYSTARDMA 190 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230 L+ + D P K + PN N + + L DG+KTG+T +G ++VA Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTDGAGHSLVA 250 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 SA+ GD LI+V+LGA R + S LL+ GF + Sbjct: 251 SAVDGDMRLISVVLGAPSDAVRFRESEKLLTWGFRFFETATLV 293 >gi|119477453|ref|ZP_01617644.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2143] gi|119449379|gb|EAW30618.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2143] Length = 384 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 1 MRQFLVIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M ++L+I++ + + + Y L+D ++G VI E D PASL Sbjct: 1 MHKYLIIVSSLFFAHWVAAAPAVIPAPPSIAASGYILIDADSGRVITEKNADEKLPPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLL 111 TKLMT+YV+ L E T +TIS+NA P S + G + L + K + Sbjct: 61 TKLMTSYVLSYELAEGNVANTDMVTISENAWAQNPTFAGSSLMWIEVGKQVNLKDLHKGV 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ S ND +VA+AE L +E F MN + LG++ +HF+NAHG+ HY TARD+A Sbjct: 121 VISSGNDASVAVAEHLAGSESAFADVMNQHAALLGMTGSHFVNAHGLPDPEHYMTARDLA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 ILS I +P+ + N N + DG+KTG T +GF +V+S Sbjct: 181 ILSKAILK-YPEEYALYSQPDYTYNNITQTNRNRLLWKDDSVDGLKTGHTEEAGFCLVSS 239 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 A + LI+V++GA ++ R S LLS GF + Sbjct: 240 AKRNGMRLISVVMGAKSQSAREVESQKLLSYGFRYFETHQL 280 >gi|320186097|gb|EFW60841.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83] Length = 403 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 14 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 74 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKDVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 134 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 194 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 254 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 294 >gi|258511715|ref|YP_003185149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478441|gb|ACV58760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 414 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 8/323 (2%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P S+ + L+D TG V+ AS+TK+MT ++F + K Sbjct: 50 APAASVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKW 109 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T + S+ A+ S + G TMT+ + +K + + SAND VA+AE L +E+ FV Sbjct: 110 TDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVA 169 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG++ THF N +G+ HY++A D+A++S + P+ + + ++ Sbjct: 170 RMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAVMSRALL-MHPEITAFTSVYSDYLR 228 Query: 197 GKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTN V + G DG+KTG+T + + + A+A + +IAV++G Sbjct: 229 KDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTV 288 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 RN A++L+ F + + Y Q E T + K Sbjct: 289 RNAEIAAMLNYAFAHYKSVQV--YPRGHVVGQVAVKRGTRDRVEAVTAEPVAFVTERSSK 346 Query: 312 EAKDKESHFIDFEKITLLKNKIT 334 A E ++ + + Sbjct: 347 TAYTTEIQWMTLKAPVSRGQVVG 369 >gi|195941235|ref|ZP_03086617.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli O157:H7 str. EC4024] Length = 363 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 130/254 (51%), Gaps = 7/254 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D +G V+AE D +PASLTK+MT+YVV LK K L +T+ K+A Sbjct: 3 DARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTVGKDA 62 Query: 87 SEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S K G +++ + K +I++S ND +A+A+ + ++ F+ MN Sbjct: 63 WATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNG 122 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL+ T F HG+ G ++TARDMA+L + D P + K + Sbjct: 123 YAQKLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQ 182 Query: 201 PNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + + + DGMKTG T +G+N+VASA QGD LI+V+LG R S L Sbjct: 183 PNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKL 242 Query: 260 LSMGFYNKTDRKKI 273 L+ GF I Sbjct: 243 LTWGFRFFETVTPI 256 >gi|303238776|ref|ZP_07325308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302593655|gb|EFL63371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 384 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 3/319 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+ V + +A+ + + P AE + L++ +TG V+ E + PAS+TK+ Sbjct: 7 MKFLSVFLLIAIFTTMHPLNIYAEFESTAGSAILIEASTGQVLYEKNSEVSMPPASITKV 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT + F + + A T +++S+ A + S + GS ++ + + + + SAND Sbjct: 67 MTLLLGFEAISKGTAKWTDLVSVSEKAWKMEGSKMFLQVGSKVSYRDIIMGISIDSANDG 126 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +A+AE LC +E FV MN +K +GL + F N G+ Q GH TA+D+ ILS + Sbjct: 127 CIALAEYLCGSENAFVSAMNEKAKEIGLKNSTFKNCTGLPQEGHRLTAKDIVILSRYLIQ 186 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++P+ + + N N +G + GADG+KTG+T +G+ + A+A Q L Sbjct: 187 NYPEILEIESKTEFTFNDIRQFNRNPLLGVYEGADGLKTGWTEEAGYCLAATAKQNGIRL 246 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVC 297 IAV+L D R LL+ GF N D KK I+ + +N + + Sbjct: 247 IAVVLNTKDEKERQIAGQELLTYGFKNFKFLDYKKSGDIVDNINIENGKKTSTPLKLDND 306 Query: 298 TTQKEIINYNTQMKEAKDK 316 I+ +K K Sbjct: 307 IKVLIPISREKDLKTVISK 325 >gi|313650258|gb|EFS14670.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str. 2457T] gi|332759746|gb|EGJ90049.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 4343-70] gi|332760581|gb|EGJ90870.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2747-71] gi|332763049|gb|EGJ93294.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671] gi|332768006|gb|EGJ98192.1| penicillin-binding protein 6 [Shigella flexneri 2930-71] gi|333007039|gb|EGK26534.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218] gi|333020974|gb|EGK40232.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304] Length = 321 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|90578587|ref|ZP_01234397.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90439420|gb|EAS64601.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 391 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ F ++ A+ + F L+ A T Y L+D NTG V+ E + Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 NPASLTKLMT+YV +K+ + IS+NA S + GS + L + Sbjct: 61 LNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LI++S ND +VA+AE + +E+ FV MN+ +K LG+++THF N HG+ YTT Sbjct: 121 FRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTP 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+L + D P + K N N + + DGMKTG+T +G+ Sbjct: 181 YDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ++ +SA +GD LIAV++G TR S +LL+ GF Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGFRFFET 283 >gi|222529548|ref|YP_002573430.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] gi|222456395|gb|ACM60657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] Length = 386 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 17/350 (4%) Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47 MR+ + I + L + + L+D +TG ++ E Sbjct: 1 MRKAITISILIFLLFGNSHIGCKKVFGESLQTQTPSLEISAKSAILVDFDTGKILYEKNS 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 PAS+TK+MT ++ +++ K L+ + S+NAS S K+ MT++ Sbjct: 61 HEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNASSLGGSQVYLKENEEMTVEEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMFDTNFVNPYGLDAENHYTSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASG 225 D+AI+S + Y I+ K+ NTN V + G G+KTG T + Sbjct: 181 YDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAK 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 F + ASA++ LIAVI+GA D TR + +L GF N + + F + + Sbjct: 240 FCVSASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFANFSMYSPYSKGYC-FGKVKV 298 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 N + E + +T ++I + K + KI K Sbjct: 299 KNGIEKEVEAILSTDVKLIVKKGDESTVESKVTLPQQISAPVKTGQKIGK 348 >gi|295690183|ref|YP_003593876.1| serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC 21756] gi|295432086|gb|ADG11258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC 21756] Length = 433 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 157/307 (51%), Gaps = 13/307 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHP 50 R LV +A+ + +PY ++D N+G V+ + D P Sbjct: 9 RSVLVAAGLALAGLFGALAPTPASAAIPYLQLNASEPKYAAIVIDANSGEVLYDKRADSP 68 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MT Y+ F L E + LT + +S A+ P+ + G +M++D A+K Sbjct: 69 RYPASVTKVMTLYLTFEALSEGRMKLTDRVVMSPRAAAQAPTKIGLRPGDSMSVDEAIKA 128 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + VKSAND+AVA+AE L +E +F M + LG+ + F+NA G+ +TARD+ Sbjct: 129 MTVKSANDVAVAMAERLAGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARDL 188 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 AILS I DFPQY YF I+G +G N + + G DG+KTG+T ASGFN+ Sbjct: 189 AILSRAIMRDFPQYYSYFSIRGFTFRGNYVKGHNRLLDSMEGFDGLKTGYTNASGFNLAG 248 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY--NKTDRKKINYIIKDFYQQNLSNE 288 SA++ + LIAV+LG R+ LL GF + R + I + Y+ + S Sbjct: 249 SAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDVMKRRSRGERTTIAANIYEDDPSGP 308 Query: 289 VPNISEE 295 + S E Sbjct: 309 IQRPSVE 315 >gi|254464797|ref|ZP_05078208.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales bacterium Y4I] gi|206685705|gb|EDZ46187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales bacterium Y4I] Length = 555 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 2/295 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +FL A +L+ + +L+ PY ++D TG V+ + D +PASLTK+MT Sbjct: 18 RFLWAAAGILLAVLGLWLAPQRAQAAPYAAMVIDARTGEVLHSSNADTRLHPASLTKMMT 77 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F ++ + L T + IS+NA+ PPS K G + ++ VKSAND A Sbjct: 78 LYIAFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKPGQRIAFRYLIRAAAVKSANDAAT 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E+L +E F + MN T+K LG++ T F NAHG+ GH +TA DM L + D+ Sbjct: 138 AIGETLSGSEAAFTRRMNRTAKALGMTRTTFKNAHGLTASGHLSTASDMTTLGRHLLYDY 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+Y + F + + ++ PNTN + + GADG+KTG+T A+GFN+VASA +GD+ +I Sbjct: 198 PEYYNLFSRRSTDAGIREVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAKRGDERII 257 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 A + G +RN A LL +GF R + + YQ + V +E Sbjct: 258 ATVFGGKSSTSRNAKVAELLDLGFRRAPSRAALRKPQRPAYQGAGNIVVAEADDE 312 >gi|24112205|ref|NP_706715.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] gi|24051049|gb|AAN42422.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] Length = 338 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 18 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 77 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 78 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 137 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 138 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 197 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 198 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LI+V+LGA R S LL+ GF I Sbjct: 258 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPI 298 >gi|89076565|ref|ZP_01162873.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89047757|gb|EAR53356.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 391 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ F ++ A+ + F L+ A T Y L+D NTG V+ E + Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 NPASLTKLMT+YV +K+ + IS+NA S + GS + L + Sbjct: 61 LNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LI++S ND +VA+AE + +E+ FV MN+ +K LG+++THF N HG+ YTT Sbjct: 121 FRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTP 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+L + D P + K N N + + DGMKTG+T +G+ Sbjct: 181 YDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ++ +SA +GD LIAV++G TR S +LL+ GF Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGFRFFET 283 >gi|218289604|ref|ZP_03493824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] gi|218240254|gb|EED07437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] Length = 414 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 16/301 (5%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P S+ + L+D TG V+ AS+TK+MT ++F + K Sbjct: 50 APASSVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKW 109 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T + S+ A+ S + G TMT+ + +K + + SAND VA+AE L +E+ FV Sbjct: 110 TDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVA 169 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG++ THF N +G+ HY++A D+AI+S + P+ + + ++ Sbjct: 170 RMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAIMSRALL-MHPEVTAFTSVYSDYLR 228 Query: 197 GKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTN V + G DG+KTG+T + + + A+A + +IAV++G Sbjct: 229 KDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTV 288 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN---ISEEVCTTQKEIINYNT 308 RN A +L+ F + K +N + + ++ EV + V E + + T Sbjct: 289 RNAEIAGMLNYAFAHY---KAVNV----YPRGHVVGEVAVKRGTRDRVEAVTAEPVAFVT 341 Query: 309 Q 309 + Sbjct: 342 E 342 >gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus G9842] gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus G9842] gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 396 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + I S+ V K+ + + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKIDLVASDNVSLLMKKGESMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 396 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|238893899|ref|YP_002918633.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella pneumoniae NTUH-K2044] gi|238546215|dbj|BAH62566.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 428 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L + P + AE + + L+D +G V++E D +PASLTK+ Sbjct: 39 LAAGCALLFLVAPAVQAAEQLPDAPSINARAWILMDYASGKVLSEGNADEKLDPASLTKI 98 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV +K K LT +T+ ++A S K G +++++ K +I+ Sbjct: 99 MTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVII 158 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L Sbjct: 159 QSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALL 218 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + PN N + + L ADG+KTG T +G+N+V+SA Sbjct: 219 TKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSA 278 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LIAV+LG R S LL+ GF I Sbjct: 279 TQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 319 >gi|152971007|ref|YP_001336116.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895589|ref|YP_002920324.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae NTUH-K2044] gi|330000619|ref|ZP_08303760.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|150955856|gb|ABR77886.1| DD-carboxypeptidase, penicillin-binding protein 6b [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547906|dbj|BAH64257.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537943|gb|EGF64124.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 389 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 17/340 (5%) Query: 1 MRQFLVIIAMAMLSNI-------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++ L I + S++ P + + + L+D TG V+ NP Sbjct: 3 LKGRLFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YVV + + +T+ K+A S K G +++ + Sbjct: 63 ASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDL 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LIV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A Sbjct: 123 SRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSA 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+LS I P H + K L G N N + + DG+KTG T +GF Sbjct: 183 YDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGF 242 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N++ASA+ G + LIAV++GA R + +A LL G N + + K ++ Sbjct: 243 NLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWY 302 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + I T ++ + + ++ K + +D + + Sbjct: 303 GDKEQIK---LGTDQDFWLALPKAEVSRIKAKYVLDKKDL 339 >gi|332289415|ref|YP_004420267.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium anatis UMN179] gi|330432311|gb|AEC17370.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium anatis UMN179] Length = 394 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 154/351 (43%), Gaps = 19/351 (5%) Query: 4 FLVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F ++ + +S F + Y L+D N+G V+A PD PASLTK+M Sbjct: 13 FAGLLGFSSISVAFAEGLYDIAPPQINAQTYILMDYNSGAVLAALNPDQKHYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YV+ LKE + T +TI + + S +++ + + +I+ S N Sbjct: 73 TSYVIGQALKEGRIHNTDMVTIDEESWGKNFPGSSKMFLNVNQQVSVADLNRGIIIASGN 132 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+A+ L ++ F+ MN GL THF HG+ Y+T+RDMA++ RI Sbjct: 133 DACVAMAKYLAGSQANFINMMNQYVDQFGLKNTHFETVHGLDHENQYSTSRDMALIGARI 192 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P+ H + K K PN N + L DG+KTG T +G+N+VASA+ + Sbjct: 193 IRDLPEEYHIYAEKEFTFNNIKQPNRNGLLWDKNLTVDGLKTGHTDEAGYNLVASAVNNN 252 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKD----------FYQQN 284 LI+V++G R S LL GF N + K + N ++ + Sbjct: 253 MRLISVVMGVNSFKGREIESKKLLQWGFANFENVKPLAANQVVSEQPVYYGKEGKIKLGT 312 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 LS+ I + K N + EA K+ + L I K Sbjct: 313 LSDVYLVIPKGKSQAVKARYQLNQKFLEAPLKQGQVVGSIVYQLDGKDIQK 363 >gi|116254096|ref|YP_769934.1| penicillin-binding protein precursor [Rhizobium leguminosarum bv. viciae 3841] gi|115258744|emb|CAK09850.1| putative penicillin-binding protein precursor [Rhizobium leguminosarum bv. viciae 3841] Length = 377 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 179/325 (55%), Gaps = 12/325 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 V A A+ P + L+D TG V+ W PASLTKLMT Y Sbjct: 17 FVSAATAVFLTSVPLAQANP------HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYT 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 VF ++ + L TP+ ISK A+ P + FK G +TLD+ALK+L+VKSAND+AVA+A Sbjct: 71 VFDAIRAGQISLDTPVVISKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSANDVAVAVA 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY Sbjct: 131 EAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+L Sbjct: 191 AGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVL 250 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 G R +A+LL GF + ++ + ++V +I ++C+ + + Sbjct: 251 GTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQ--DQVTDIGADICSAKGAKV 308 Query: 305 NYNTQMKEAKDKE----SHFIDFEK 325 T+ + + K +D + Sbjct: 309 RSETRDEVGRMKVLSPYIQPMDHDP 333 >gi|197284323|ref|YP_002150195.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis HI4320] gi|227358533|ref|ZP_03842858.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis ATCC 29906] gi|194681810|emb|CAR41057.1| putative penicillin-binding protein [Proteus mirabilis HI4320] gi|227161244|gb|EEI46318.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis ATCC 29906] Length = 403 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +R L +L+ + + + Y L+D N+G V+AE D Sbjct: 10 LRTRLFSATFILLAISHHAIADDTLKTMIPAVPNIEAESYILIDYNSGKVLAEKNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ ++ K + I + A S K G +T+ Sbjct: 70 DPASLTKMMTSYVIGQAIRAGKISNNDIVPIGEEAWATGNPVFRGSSLMFLKPGDKVTVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + + ++S ND VA+A + ++ FV MN+ K LGL T F HG+ G Y+ Sbjct: 130 QLTRGINLQSGNDACVAMASYVAGSQDTFVTMMNDYVKRLGLQNTQFQTVHGLDAPGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P+ ++ K + N N + T L DG+KTG T A+ Sbjct: 190 SARDMALIGAALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDTSLNVDGIKTGHTEAA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G+ LI+ ++G R+ S LL+ GF K + + K+F + Sbjct: 250 GYNLVASATEGNMRLISAVMGGHSSKGRDAESKKLLTWGFRFFETVKPL-QVGKEFAAEP 308 Query: 285 L 285 + Sbjct: 309 I 309 >gi|253990345|ref|YP_003041701.1| penicillin-binding protein 6 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781795|emb|CAQ84958.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase) [Photorhabdus asymbiotica] Length = 400 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 166/339 (48%), Gaps = 14/339 (4%) Query: 6 VIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++A+ +++N + S + + Y L+D ++G ++A N PD +PASLTK+MT+ Sbjct: 14 AVLAVILVANTHAYASDEPLVPSVDAKAYVLMDYDSGKILASNNPDERLDPASLTKIMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YV+ +K K +T+ K+A S K G + + + + ++++S Sbjct: 74 YVIGQAIKAGKITPEDVVTVGKDAWATGNPVLKGSSLMFLKPGDQVKVIDLNRGIVIQSG 133 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+A+ + ++ FV MNN K+LGL+ THF HG+ G ++TARDMA+LS Sbjct: 134 NDASIALADYVAGSQDTFVSLMNNYVKSLGLTNTHFQTVHGLDAEGQFSTARDMAVLSQA 193 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P + K + PN N + + DG+KTG+T +G+N+VASA +G Sbjct: 194 MIRDVPDEYVLHKEKAFTFNKIQQPNRNRLLWNKSINVDGVKTGYTSGAGYNLVASATEG 253 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPN 291 LI+V+LGA R S LLS GF I +++ + + + S+ V Sbjct: 254 PMRLISVVLGAPSDRVRFAESEKLLSWGFRFYETVTPIKASESFVSEKVWYGDRSDVVLG 313 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + ++ T N + ++ K ++ Sbjct: 314 VEKDAAITIPRGQLKNLKASYTLNQTPLEAPLAKNQVVG 352 >gi|157145043|ref|YP_001452362.1| D-alanyl-D-alanine carboxypeptidase [Citrobacter koseri ATCC BAA-895] gi|157082248|gb|ABV11926.1| hypothetical protein CKO_00774 [Citrobacter koseri ATCC BAA-895] Length = 420 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 27/323 (8%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 ++ A+ +++ F + + L+D TG ++ NPASLTKLMT YVV Sbjct: 48 LSSALAADVPDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQRRNPASLTKLMTGYVVDR 107 Query: 68 FLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + +T+ ++A S K+G +++ + + LIV S ND V Sbjct: 108 AIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKQGERVSVRDLSRGLIVDSGNDACV 167 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+A+ + + +FV MN+ + L L THF HG+ G +++A D+A+LS I Sbjct: 168 ALADYIAGGQPQFVAMMNHYVETLKLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGE 227 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P++ H + K L G N N + + DG+KTG T +GFN++AS++ G + LI Sbjct: 228 PEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLIASSVDGQRRLI 287 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYIIK---------DF 280 AV++GA R + LL G N + +I Y K DF Sbjct: 288 AVVMGAESAKGREDQARKLLQWGQQNFDTVQILRSGKQVGTERIWYGDKENIALGTEQDF 347 Query: 281 YQQNLSNEVPNISEEVCTTQKEI 303 + E+P+I +KE+ Sbjct: 348 WMALPKTEIPHIKARYALDKKEL 370 >gi|288549405|ref|ZP_06390668.1| hypothetical protein ENTCAN_05367 [Enterobacter cancerogenus ATCC 35316] gi|288318989|gb|EFC57927.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 408 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 14/282 (4%) Query: 6 VIIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + A+L P L A + L+D +G V+AE D +PASLTK Sbjct: 18 LAAGSALLFLFAPTLYAAEQAAPEAPPVDARAWILMDYASGKVLAEGNADEKLDPASLTK 77 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLI 112 LMT+YVV LK K L +T+ K+A S K G +++ + K +I Sbjct: 78 LMTSYVVGQALKAGKIKLDDMVTVGKDAWATGNPALRGSSVMFLKPGDRVSVSDLNKGVI 137 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND +A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+ Sbjct: 138 IQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTNTTFKTVHGLDAPGQFSTARDMAL 197 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 L + D P+ + K + PN N + + + DGMKTG T +G+N+VAS Sbjct: 198 LGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVAS 257 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 A QGD LI+V+LG R S LL+ GF I Sbjct: 258 ATQGDMRLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 299 >gi|262041066|ref|ZP_06014285.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041624|gb|EEW42676.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 400 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L + P + AE + + L+D +G V++E D +PASLTK+ Sbjct: 11 LAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV +K K LT +T+ ++A S K G +++++ K +I+ Sbjct: 71 MTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L Sbjct: 131 QSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + PN N + + L ADG+KTG T +G+N+V+SA Sbjct: 191 TKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LIAV+LG R S LL+ GF I Sbjct: 251 TQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|261825019|pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825020|pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825021|pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825022|pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Apo State gi|261825023|pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825024|pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825025|pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825026|pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Acyl-Enzyme Complex With Ampicillin gi|261825027|pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825028|pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825029|pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment gi|261825030|pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6) From E. Coli In Complex With A Substrate Fragment Length = 352 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 92/258 (35%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ Sbjct: 8 APSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTV 67 Query: 83 SKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 K+A S K G +++ + K +I++S ND +A+A+ + +++ F+ Sbjct: 68 GKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIG 127 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LGL+ T F HG+ G ++TARDMA+L + D P+ + K Sbjct: 128 LMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFN 187 Query: 197 GKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + PN N + + L DGMKTG T +G+N+VASA QGD LI+V+LGA R Sbjct: 188 KIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNE 247 Query: 256 SASLLSMGFYNKTDRKKI 273 S LL+ GF I Sbjct: 248 SEKLLTWGFRFFETVTPI 265 >gi|206576649|ref|YP_002239512.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|290510585|ref|ZP_06549955.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|206565707|gb|ACI07483.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|289777301|gb|EFD85299.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 400 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 17/343 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L + P + AE + + L+D +G V++E D +PASLTK+ Sbjct: 11 LAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV +K K LT +T+ ++A S K G +++++ K +I+ Sbjct: 71 MTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L Sbjct: 131 QSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + PN N + T L ADG+KTG T +G+N+V+SA Sbjct: 191 TKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNE 288 QGD LIAV+LG R S LL+ GF I ++ + + + S Sbjct: 251 TQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQRVWFGDSSEA 310 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 E T + N + ++ EK ++ Sbjct: 311 KLGAGEAGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGT 353 >gi|299132249|ref|ZP_07025444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298592386|gb|EFI52586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 475 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 176/317 (55%), Gaps = 8/317 (2%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + ++ F + A Y L+D N+G V+ PW PASLTK+MTAYV + + Sbjct: 3 LIAIAAAFSLHASATPAHAEAYLLIDANSGKVLQAENATQPWYPASLTKIMTAYVTLTAV 62 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K+ + L T +T+S NA PS F G+T+T+DNALK+++VKSAND+AV +AE + Sbjct: 63 KQGRISLDTLLTVSPNAVAQAPSKMGFPAGTTVTVDNALKMMMVKSANDMAVVLAEGVGG 122 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 + + F MN T++ LG++ +HF+N +G+ H ++ARD+ IL+ D P+Y ++ Sbjct: 123 SIEGFAGMMNETARQLGMTQSHFVNPNGLPDDAHISSARDIGILARAFYRDLPEYEYFAH 182 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + G++ + N N +G + GADGMKTGF CASGFN+VASA + D+ LIAV+LGA Sbjct: 183 LPGIKFGRRVTMNFNKLIGRYPGADGMKTGFICASGFNLVASATRNDKHLIAVVLGAPSS 242 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTTQKEIIN 305 R +A LL GF + K+ ++ + PN+ ++VC ++ Sbjct: 243 AQRTIKAAQLLEKGFNHS----KLAWLKPSLGTVEQLPPIDAAPPNLRDQVCGPHRKRPA 298 Query: 306 YNTQMKEAKDKESHFID 322 + + + + D Sbjct: 299 AEDEDDDVEITLDNKSD 315 >gi|152969428|ref|YP_001334537.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330008401|ref|ZP_08306219.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|150954277|gb|ABR76307.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328535160|gb|EGF61663.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 400 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 13/281 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L + P + AE + + L+D +G V++E D +PASLTK+ Sbjct: 11 LAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV +K K LT +T+ ++A S K G +++++ K +I+ Sbjct: 71 MTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L Sbjct: 131 QSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + PN N + + L ADG+KTG T +G+N+V+SA Sbjct: 191 TKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 QGD LIAV+LG R S LL+ GF I Sbjct: 251 TQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 291 >gi|86359415|ref|YP_471307.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86283517|gb|ABC92580.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 360 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 182/318 (57%), Gaps = 6/318 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M++ F++ + + L++ TG V+ W PASLTKLMT Y VF ++ Sbjct: 1 MIAATAAFVASVSLVQANPHILVEVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRA 60 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + L TPI ISK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T+ Sbjct: 61 GQISLDTPIVISKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGTQ 120 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++ Sbjct: 121 EGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALE 180 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG Sbjct: 181 GFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAA 240 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 R +A+LL GF + +K + ++V +I+ ++C+ + I T+ + Sbjct: 241 RADATANLLQKGFTTQFPGSDTLGSLKPYGPGQ--DQVTDITADICSAKGAKIRSETRDE 298 Query: 312 EAKDKESHF----IDFEK 325 + K +D + Sbjct: 299 VGRMKVHSPYILEMDHDP 316 >gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 396 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDGVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|296103221|ref|YP_003613367.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057680|gb|ADF62418.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 404 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 137/276 (49%), Gaps = 7/276 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L+ + + L A + L+D ++G V+AE D +PASLTK+MT+YV Sbjct: 20 LLFLFVPTLYAAEQAAPEAPPVDARAWILMDYSSGKVLAEGNADEKLDPASLTKIMTSYV 79 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V LK K L +TI K+A S K G +++ + K +I++S ND Sbjct: 80 VGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGND 139 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+L + Sbjct: 140 ACIALADYVAGSQDSFIGLMNGYAQKLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALI 199 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + PN N + + + DGMKTG T +G+N+VASA QGD Sbjct: 200 HDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDM 259 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V+LG R S LL+ GF I Sbjct: 260 RLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 295 >gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] Length = 396 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGKKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 396 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|157370876|ref|YP_001478865.1| D-alanyl-D-alanine carboxypeptidase [Serratia proteamaculans 568] gi|157322640|gb|ABV41737.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 389 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 157/338 (46%), Gaps = 19/338 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51 M++ ++ + +L + + A N Y L+D TG V+A+ D Sbjct: 1 MKRSVLAVITGILLPLAVQAADAPLNFPLNTPPAIDAASYVLMDYTTGQVLAQENADQRR 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 NPASLTKLMT V+ L + K L +T+ K+A S K G +T+ Sbjct: 61 NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + + +I+ S ND VA+A+ + ++ FV+ MN S LGL THF HG+ G +T Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSAQLGLQNTHFETVHGLDAPGQFT 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 TA D+A++S I P H + K L G N N + L DG+KTG T ++ Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLTWNGITQQNRNGLLWDKNLRVDGLKTGHTESA 240 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 GFNI+ASA +GD+ LIAV++G R + + LL+ G + + ++ Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSPKGREEQARKLLTWGLRDFVTLHLFSAGQSLGQEKV 300 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 + ++ +Q++ + + K K + I+ Sbjct: 301 WYGDRHEVA---VGSQQDQYLSLPKSEADKLKAQYVIN 335 >gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH1134] gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH1134] gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 396 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|56460065|ref|YP_155346.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR] gi|56179075|gb|AAV81797.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR] Length = 385 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 155/331 (46%), Gaps = 18/331 (5%) Query: 1 MRQF---LVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ + + S F S+ A + Y L+D TG V+AEN PA Sbjct: 1 MKKICHLFTAVTLLFSSASFAAQSLVPDAPSVNAKAYILIDHTTGKVLAENNSRESLPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLL 111 SLTK+MT+Y++ + + +T+S+NA S + G +++ + + Sbjct: 61 SLTKMMTSYIIGKEMLAGRISEKDIVTVSENAWAKNFPESSKMFIEVGKEVSVKELNRGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I+ S ND VA+AE + +E F MNN ++ +G+ +HF N+HG+ Y +ARDMA Sbjct: 121 IISSGNDACVAMAEHIAGSEDAFAGLMNNYAEQIGMKDSHFANSHGLPDSEQYVSARDMA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 L+ + + P + K K N N + L DG+KTG T +G+++V+ Sbjct: 181 TLASALINETPDEYKLYSEKSFTYNNIKQYNRNSLLWDRSLNVDGIKTGHTNEAGYSLVS 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLS 286 SA++ LIAV++G R S LL+ GF K ++I + + +L Sbjct: 241 SAVEDGTRLIAVVMGTNSEQARKVESKKLLNYGFRYFETVKAYSAGESFISQRIWGGDLD 300 Query: 287 NEVPNISEEVCTT----QKEIINYNTQMKEA 313 ISE+V T Q++ + N ++ E Sbjct: 301 EVELGISEDVVITLPKGQRDKLKANFELDEQ 331 >gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 396 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|119713334|gb|ABL97398.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium EB80_02D08] Length = 385 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 144/274 (52%), Gaps = 1/274 (0%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ L ++++++ + F+ A + Y L++ NT +IAE + PAS+TK+ Sbjct: 1 MKKILFILLSISTIGESQSFVPDAPELDVKSYILIEPNTNTIIAEYNSESEIEPASMTKI 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT+YVV + L + IS+ A S + + G +T+ + LK ++++S ND Sbjct: 61 MTSYVVADQISNGLISLDDEVLISEKAWRMKGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE TE+ FV MN+ + +LG++ T F NA G+ H+++A+D+A L+ Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYASSLGMNNTIFQNATGLPDENHFSSAKDLANLTSNYIN 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FP+ ++ K K N N + DG+KTG T A+G+ +V SA +G L Sbjct: 181 KFPEEYALYKQKEFTFNNIKQLNRNKLLWRDDSTDGVKTGHTEAAGYCLVGSAKRGGMRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 I V+ G+ N R S LL GF T +K + Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFYTTQKML 274 >gi|300717466|ref|YP_003742269.1| penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase) [Erwinia billingiae Eb661] gi|299063302|emb|CAX60422.1| Penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase) [Erwinia billingiae Eb661] Length = 379 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 160/332 (48%), Gaps = 14/332 (4%) Query: 6 VIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +++A A L+ N F + + L+D TG V+ + D NPASLTKLMT Sbjct: 1 MVLAFASLAHADDNPLAFPMTPPSVDAASWVLMDATTGQVLTQGNADERRNPASLTKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKS 115 YVV + K+ +TI ++A S K G +++ + + +I+ S Sbjct: 61 GYVVDRAIDAKRITRDDMVTIGQDAWGAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + ++ FV MN LGL+ THF HG+ G +TTA D+A LS Sbjct: 121 GNDACVALADYVAGSQSAFVDQMNQYVTKLGLTNTHFETVHGLDAPGQFTTAGDLAKLSR 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 I + P + + K L G N N + L DG+KTG T ++GFNI+AS++ Sbjct: 181 AIISGEPDFYQMYGEKSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIASSVD 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 G + LIAVI+G R + + LL+ G N D ++ + K+ +N+ P+ + Sbjct: 241 GQRRLIAVIMGGKSTKGREEQARKLLTWG-QNNFDTVQLFHAGKEIGHENVWYGNPH--Q 297 Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + K++ + + K K + ID + + Sbjct: 298 VSVGSDKDVYLALPRDEVKKIKAKYVIDRKDL 329 >gi|296537403|ref|ZP_06899250.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296262269|gb|EFH09047.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 375 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 129/245 (52%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG V+ E D P+S++KLMT YVVF LK+ + L + +S+ Sbjct: 26 DTSARQALLMDADTGAVLLEKSADERMPPSSMSKLMTMYVVFDLLKQGRLRLDQTLPVSE 85 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S + GS ++++N + +I++S ND + +AE + +E++F + +N ++ Sbjct: 86 RAWRMGGSKMFVELGSAVSVENLARGVIIQSGNDACIVLAEGISGSEQQFAELLNEYARK 145 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ + F NA G H TARD+A L+ + DFPQY ++ + + G N N Sbjct: 146 LGLNDSTFRNATGWPDPEHRMTARDLATLARHLINDFPQYFAFYSERSFQWNGINQENRN 205 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G GADG+KTG T +G+ + + +GD+ LI V+ G R + S L+ GF Sbjct: 206 PLLGRVPGADGLKTGHTEDAGYGLTGTVKRGDRRLILVVNGLTSMRARGEESERLMEWGF 265 Query: 265 YNKTD 269 + Sbjct: 266 REFEN 270 >gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus B4264] gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus B4264] Length = 396 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGGALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|312622222|ref|YP_004023835.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] gi|312202689|gb|ADQ46016.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] Length = 386 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 146/313 (46%), Gaps = 4/313 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG ++ E PAS+TK+MT ++ +++ K L+ + S+ Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQ 97 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K Sbjct: 98 NASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 G+ T+F+N +G+ HYT+A D+AI+S + Y I+ K+ N Sbjct: 158 FGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTN 216 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL Sbjct: 217 TNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDW 276 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 GF N + + F + + N + E V +T ++I + K + Sbjct: 277 GFANFSMYSPYSKGYC-FGKVKVKNGIEKEVEAVLSTDVKLIVKKGDESTVESKVALPQQ 335 Query: 323 FEKITLLKNKITK 335 KI K Sbjct: 336 ISAPVKTGQKIGK 348 >gi|34498549|ref|NP_902764.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472] gi|34104404|gb|AAQ60762.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472] Length = 381 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 6/278 (2%) Query: 1 MRQF---LVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ LV A+A+ S F F+ Y LLD N+ V+A PD PA Sbjct: 1 MKKLTTALVASALALPSLGFANTAFVPPTPEIAGKAYYLLDYNSQQVLAARDPDARIEPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMTAY+ F LKEK+ L +T+S+ + S +D+ +K +IV+ Sbjct: 61 SLTKLMTAYLTFKALKEKRLSLEQTLTVSQRGWKTEGSRMFLDPKVPAKVDDLIKGMIVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND V +AE++ +E F Q M + LG+ T F NA G+ GHYTT D+ IL+ Sbjct: 121 SGNDACVTLAEAIAGSEDVFGQLMTQQALKLGMKNTQFKNATGLPHEGHYTTVHDLGILA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + D+P++ + +K K PN N + DGMKTG+T ++G+N+V S+ + Sbjct: 181 AALIRDYPEFYPIYSMKSFTYNNIKQPNRNLLLYRDPNVDGMKTGYTDSAGYNMVTSSHR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + +I+V++G R S+ LL+ G K Sbjct: 241 DGRRVISVVVGTASPEARAVESSKLLNYGLQFFDTPKL 278 >gi|209886488|ref|YP_002290345.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] gi|209874684|gb|ACI94480.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] Length = 492 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 118/333 (35%), Positives = 185/333 (55%), Gaps = 7/333 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R +L+ IA A+ +++ + AE Y L+D ++G V+ PW PASLTK+MT Sbjct: 13 RIWLIAIAAALSLSLWARPAQAE-----AYLLIDASSGKVLQATNATQPWYPASLTKIMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYV S +K+ + L T +T+S NA PS F G+ +T+DNALK+++VKSAND+AV Sbjct: 68 AYVTLSAVKQGRINLDTLLTVSPNALSQAPSKMGFPAGTQVTVDNALKMMMVKSANDMAV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + F MN T++ LG++ TH++N +G+ ++ARD+ ILS D Sbjct: 128 VLAEGVGGSVDGFSALMNETARQLGMTQTHYVNPNGLPDDRQISSARDLGILSRAFYRDL 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +Y + G++ + N N +G + GADG+KTGF CASGFN+VASA + D+ LIA Sbjct: 188 PEYQYYAHLPGIKFGRRITHNFNKLIGRYPGADGLKTGFICASGFNLVASATRNDRHLIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV-PNISEEVCTTQ 300 V+LGA R +A LL GF N + + + Q + + PN+ ++VC Sbjct: 248 VVLGASSSAQRTVKAAQLLEKGF-NGSKLAWLKPSLGTVEQLPPVDALPPNLRDQVCGPH 306 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 ++ + + + + D T K+ Sbjct: 307 RKRPAAEDEDDDIEITLDNQSDVANPTYALAKL 339 >gi|167037532|ref|YP_001665110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115947|ref|YP_004186106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856366|gb|ABY94774.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929038|gb|ADV79723.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 381 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 164/351 (46%), Gaps = 18/351 (5%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ +L S + A+T K L++ NTG ++ E P PAS+T Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILMEANTGQILYEKDSHKPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + G DG+KTG T + + + A+A +G Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + L + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAVSVV 301 Query: 294 ----EEVCTTQKEIINYNTQMKEAKDK-----ESHFIDFEKITLLKNKITK 335 E + + E N T+++ + I KIT I K Sbjct: 302 CRDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGKVIKK 352 >gi|291541617|emb|CBL14727.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63] Length = 382 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 9/274 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 +R+ V I + + + PF+ + A++ P L++++TG V+ E P A Sbjct: 2 LRKAFVSITLCAVFLLLPFVGLKVNALSADSISAPSAVLMESSTGKVLFEKNPHEQRPCA 61 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT +VF + K L IT S++A+ S+ +KG TM+ D+ +K +V Sbjct: 62 SVTKIMTLLLVFEAVDSGKLSLDDEITASEHAAGMGGSDIWLEKGETMSADDMIKATVVV 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND AVA+AE + E FV+ MN+ +K LG++ T F N +G+ + GH T+A D+A++S Sbjct: 122 SANDAAVALAEHISGGEDAFVEKMNSRAKELGMNDTVFKNCNGLDEEGHITSAYDVALMS 181 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + T + Y I ++G K NTN + T+ G G+KTG T +G + A+A Sbjct: 182 REL-TKHEKIFDYTSIWLDNLRGGKTQIVNTNKLLKTYNGITGLKTGTTNDAGCCMSATA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +GD SLI+V+LG R +A+LL GF N Sbjct: 241 TRGDVSLISVVLGCKTGKERFADAAALLDYGFAN 274 >gi|260777069|ref|ZP_05885963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260606735|gb|EEX33009.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 394 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 147/308 (47%), Gaps = 11/308 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M ++ + A+ + ++ A Y ++D ++G V+A PD P PASL Sbjct: 1 MIKWTQLCALLCTLVVASAEAVITPDAPQINAKGYVVMDYHSGQVVASQNPDTPLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV + + TIS+NA PS K G +++ N + +IV Sbjct: 61 TKLMTAYVVGQEINAGRLSWDDKATISRNAWSVNFPEPSKMFIKPGDEISIRNLMLGVIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VA+AE + +E FV MN ++ LG+ T F+NAHG+ TT +DMA L Sbjct: 121 QSGNDASVALAEHVAGSESAFVSLMNGWTQTLGMENTQFINAHGLDGDNIQTTPKDMANL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I D P+ +Q K + N N + L DG KTG+T +G+++V+SA Sbjct: 181 MRAIIKDVPEVYKLYQEKKFTWNDIEQYNRNKLLWDRSLNVDGGKTGYTENAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEV 289 +G LI+V++G + R S +LL GF KK I++ + V Sbjct: 241 TEGRMRLISVVMGTPSQQARTSASRNLLGYGFRFFDTVQVAKKDEVIMQSRVWKGAEENV 300 Query: 290 PNISEEVC 297 P E Sbjct: 301 PVTVAETV 308 >gi|119713206|gb|ABL97274.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium EB0_50A10] Length = 384 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 137/274 (50%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ L+ + + + F+ A L Y L++ NT VIAE D PAS+TK+M Sbjct: 1 MKKLLIPLLLTNILYAQSFVPDAPELDLKSYILIEPNTNTVIAEFNSDSEIEPASMTKIM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T+YVV + L + IS+ A S + G +++ + LK +I++S ND + Sbjct: 61 TSYVVADQIANDLISLDDQVLISEKAWRMEGSKMFIEAGKKVSVSDLLKGIIIQSGNDAS 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE TE+ FV MN + L ++ T F N+ G+ H+++A+D+A L+ Sbjct: 121 VAIAEYAGGTERGFVDLMNAYAGALSMNNTIFKNSTGLPDENHFSSAKDLATLTSDFIKK 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP + K K N N + +DG+KTG T A+G+ +V SA +G+ LI Sbjct: 181 FPDIYSLYNEKQFTFNNIKQLNRNKLLWRDDSSDGVKTGHTEAAGYCLVGSAKRGNMRLI 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 V+ G+ N R S LL GF +K +N Sbjct: 241 TVVAGSDSDNNRFLASQRLLEYGFRFFATQKVLN 274 >gi|304410306|ref|ZP_07391925.1| Beta-lactamase [Shewanella baltica OS183] gi|307301983|ref|ZP_07581741.1| Beta-lactamase [Shewanella baltica BA175] gi|304351715|gb|EFM16114.1| Beta-lactamase [Shewanella baltica OS183] gi|306914021|gb|EFN44442.1| Beta-lactamase [Shewanella baltica BA175] gi|315268757|gb|ADT95610.1| Beta-lactamase [Shewanella baltica OS678] Length = 425 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I + ++ P ++ A + + L+D N+G +IAE+ NPASLTK Sbjct: 43 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 102 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S Sbjct: 103 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 162 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L Sbjct: 163 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 222 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P H + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 223 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 282 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G + R S LL+ GF ++I Y K Sbjct: 283 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 342 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 343 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ 394 >gi|323705320|ref|ZP_08116895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535222|gb|EGB24998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 384 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 97/314 (30%), Positives = 155/314 (49%), Gaps = 9/314 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +I + + S + + A+ K L+D NTG V+ E PAS+TK+MT Sbjct: 7 LFTLIFVLICSVLLENFAYADNFNLKSKSAILMDANTGKVLYEKNSHEELPPASVTKVMT 66 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 +V L K T + S++A + + + G MT+D+ LK + + SAND +V Sbjct: 67 MLLVIEALDSGKIKTTDKVVTSEHAYDMGGTQIYLEVGEEMTVDDLLKSVAMNSANDASV 126 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + +E+KFV+ MN +K LG T+F NA G+ + GHYT+ DMA++S + Sbjct: 127 ALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEDGHYTSVYDMALISRELVKHK 186 Query: 182 PQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + +I + NTN + + GADG+KTG T + + + A+A +GD I Sbjct: 187 NVFKYLTDKIDSVRNGKFSLANTNKLLWNYQGADGIKTGSTSEALYCLSATAKRGDTRFI 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDF----YQQNLSNEVPNISE 294 AV+ GA D TR K ++ LL GF N +K + + + QQ+ N + E Sbjct: 247 AVVFGAPDSATRFKEASKLLDYGFANFETKKVVEAGKVYGNIKVLKGQQDYVNAISQNDE 306 Query: 295 EVCTTQKEIINYNT 308 + + E N Sbjct: 307 YILLKKGESKNIKQ 320 >gi|118602482|ref|YP_903697.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567421|gb|ABL02226.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 375 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 156/299 (52%), Gaps = 8/299 (2%) Query: 5 LVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 LVI+ +++ N + A Y+++D N+G VIA + PASLTKLMT Sbjct: 10 LVILISSLVLNTQAVIFITPKAPKISTAAYSIVDYNSGKVIASSKQHDKRAPASLTKLMT 69 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYVVF F+ + + L + ISK A + S S + G ++ L+ LK +I++S ND AV Sbjct: 70 AYVVFQFINDGRISLEDEVRISKKAWKTGGSKSFVEVGKSIKLETLLKGMIIQSGNDSAV 129 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE F +MN ++ LG++ + F NA G+ YTTA D+ +L+ DF Sbjct: 130 ALAEHIAGTESTFTTYMNEYARQLGMNNSWFENASGLPNDNQYTTAADITLLAIATIRDF 189 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P++ ++ K G K N N + + DG+KTGFT +G+N+VASA + LI+ Sbjct: 190 PKFYQWYSQKEFTYHGIKQRNRNKLLWSDHTVDGLKTGFTKKAGYNLVASAKRAGMRLIS 249 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 V+LG+ N R + +L GF IKD ++ + +V T++ Sbjct: 250 VVLGSSSVNARTSQTQKILDYGFRFFET-----QTIKDIKKEVPIASATKDTLKVGTSK 303 >gi|212709668|ref|ZP_03317796.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM 30120] gi|212687479|gb|EEB47007.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM 30120] Length = 401 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 141/278 (50%), Gaps = 10/278 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V+++ ++ + P +A + L+D N+G ++A + PD +PASLTK+MT+ Sbjct: 18 SLFVVMSASVYAAQTP---VAPQVDAKAFVLMDYNSGKILASSNPDERLDPASLTKIMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YVV +K K +T+S+ A S K +++ + K ++++S Sbjct: 75 YVVGQAVKAGKITPQDMVTVSEAAWATGNPILKGSSLMFLKPKDRVSVLDLNKGVVIQSG 134 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+AE + +++ FV MN + +GL+ THF HG+ G Y+TARDMA+L+ Sbjct: 135 NDASIALAEHVAGSQESFVDLMNGYVQKIGLTNTHFKTVHGLDSDGQYSTARDMAVLAQA 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQG 235 + D P + K + PN N + + L DG+KTG T +G N+VASA G Sbjct: 195 LIRDVPDEYVLHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V+LGA R S LL+ GF I Sbjct: 255 PMRLISVVLGAPSDRVRFAESEKLLTWGFRFFETVTPI 292 >gi|262040030|ref|ZP_06013292.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042607|gb|EEW43616.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 389 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 17/340 (5%) Query: 1 MRQFLVIIAMAMLSNI-------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++ L I + S++ P + + + L+D TG V+ NP Sbjct: 3 LKGRLFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YVV + + +T+ K+A S K G +++ + Sbjct: 63 ASLTKLMTGYVVDRAIDSHRITFDDIVTMGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDL 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LIV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A Sbjct: 123 SRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSA 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A+LS I P H + K L G N N + + DG+KTG T +GF Sbjct: 183 YDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGF 242 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N++ASA+ G + LIAV++GA R + +A LL G N + + K ++ Sbjct: 243 NLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWY 302 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + I T ++ + + ++ K + +D + + Sbjct: 303 GDKEQIK---LGTDQDFWLALPKAEVSRIKAKYVLDKKDL 339 >gi|149916443|ref|ZP_01904962.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. AzwK-3b] gi|149809713|gb|EDM69567.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. AzwK-3b] Length = 482 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 164/291 (56%), Gaps = 4/291 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R ++ A + + P +IA ++D +G V+ + D +PASLTK+MT Sbjct: 10 RWSVIAFATIWMLVVVPLSAIA---APYAAMVMDARSGEVLHAHNADTRLHPASLTKMMT 66 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YVVF ++ + L T +TIS++A+ PPS + G + L + ++ +KSAND A Sbjct: 67 LYVVFEAVENGEIGLDTMVTISQHAASEPPSKLGLRAGQKIRLRHLIRAAAIKSANDAAT 126 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE++ +E +F + MN T+K +G++ T F NAHG+ + GH +TARDM IL + D+ Sbjct: 127 ALAEAIEGSEARFARRMNRTAKAMGMTRTTFKNAHGLTESGHLSTARDMTILGRHVFYDY 186 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+Y + F + +K +TN + ++ GADG+KTG+T A+GFN+VASA +G + +I Sbjct: 187 PEYYNLFSRITADAGVRKVYHTNRALLNSYRGADGIKTGYTRAAGFNLVASAERGGERII 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A + G +RN A LL +GF R ++ + Y + + P+ Sbjct: 247 ATVFGGNSTASRNAKVAELLDLGFRKAPSRVALHKPRRPAYAGRMQDSAPD 297 >gi|285017609|ref|YP_003375320.1| D-alanyl-D-alanine carboxypeptidase [Xanthomonas albilineans GPE PC73] gi|283472827|emb|CBA15332.1| probable d-alanyl-d-alanine carboxypeptidase protein [Xanthomonas albilineans] Length = 402 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 16/330 (4%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + L+D +G V+A PAS+TK+MT+YVV + LK+ K + Sbjct: 44 APKPAVSKSWVLMDYASGQVLAGENEHLRVAPASITKVMTSYVVAAELKQGKIKRDDQVM 103 Query: 82 ISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+ A S S F T L++ K + V+S ND A+A+AE +E+ F Sbjct: 104 LSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAVQSGNDAAIALAEHTAGSEEAFAN 163 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MNN + +G++ +HF+NAHG+ GHYTTA D+A+L + D+P+ Y +I+ + Sbjct: 164 LMNNYAAKIGMTGSHFVNAHGLSAEGHYTTAYDLALLGRAMVRDYPETYAYNKIREFRVG 223 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 PN N + DG+KTG T +G+ +++SA +GDQ LIAV++G R + S Sbjct: 224 DITQPNRNLLLWRDPSVDGIKTGHTSEAGYCLLSSAQRGDQRLIAVVMGDSSEKQRAEDS 283 Query: 257 ASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN------ 307 +LL+ GF + + + + +V + YN Sbjct: 284 LALLNWGFRFFETHRLYEPGKQVAQQRVWKGTEKQVLLGVAQPLLVSVPRGRYNELKPSI 343 Query: 308 --TQMKEAKDKESHFIDFEKITLLKNKITK 335 + A K+ I ++TL I + Sbjct: 344 DVPKTLTAPIKQGQAIGTVRVTLDGKVIAQ 373 >gi|304316784|ref|YP_003851929.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778286|gb|ADL68845.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 381 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +++ + I + L IA + K L+D +TG V+ E PAS+ Sbjct: 2 LKKIISFILIFTLIYTIITEDIAYADNFDLKSKSAILMDASTGKVLYEKNSHEELPPASV 61 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT +V L K T + S++A + + + G MT+D+ LK + + SA Sbjct: 62 TKVMTMLLVMEALDSGKIKTTDKVVTSEHAFDMGGTQIYLEVGEEMTVDDLLKSVAMNSA 121 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +VA+AE + +E+KFV+ MN +K LG T+F NA G+ + HYT+ D+A++S Sbjct: 122 NDASVALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEKDHYTSVYDIALISRE 181 Query: 177 IKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + + + +I + NTN + + GADG+KTG T + + + A+A +G Sbjct: 182 LVKHKGIFKYLTDKIDSVRNGKFSLANTNKLLWRYQGADGIKTGSTSEALYCLSATAKRG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEV 289 D IAVI GA D NTR K ++ LL GF N +K + + +Q+ N V Sbjct: 242 DTRFIAVIFGAPDSNTRFKEASKLLDYGFANFETKKVVEAGKIYGTVKVLKGEQDYINAV 301 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 N E V + E N ++ K E+ KI +K Sbjct: 302 ANTDEYVLLKKGEAKNIKQEIIINKYVEAPIKVGAKIGTIK 342 >gi|163737219|ref|ZP_02144637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] gi|161389823|gb|EDQ14174.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] Length = 529 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 154/280 (55%), Gaps = 5/280 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++I ++M++ P A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 29 LVIFLSMVATAPPGAMAAPY----AAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 84 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI E Sbjct: 85 FEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIGE 144 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y Sbjct: 145 TLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEYY 204 Query: 186 HYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 205 NLFSRRSTDAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATVF 264 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G +RN A LL +GF R K+ + YQ N Sbjct: 265 GGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGN 304 >gi|300722312|ref|YP_003711597.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297628814|emb|CBJ89392.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus nematophila ATCC 19061] Length = 402 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 18/297 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNK----------LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 V + +A+ +++ F + + K Y L+D N+G ++AE D +PAS Sbjct: 13 VTLGIALAASVSAFANTDDNFKTMIPGVPELDSEAYILIDYNSGKILAEKNADVRRDPAS 72 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTK+MT+YV+ +K K +T+ K+A S K G +++ + Sbjct: 73 LTKMMTSYVIGQAIKSGKIGPNDIVTVGKDAWATGNPIFKGSSLMFLKPGDQVSVAMLSR 132 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + ++S ND VA+A+ + ++ FV MN ++LGL THF HG+ +G Y++ARD Sbjct: 133 GINLQSGNDACVAMADYVAGSQDAFVSLMNKYVQSLGLQNTHFQTVHGLDANGQYSSARD 192 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA++ + D P ++ K + PN N + L DG+KTG T +G+N+ Sbjct: 193 MALIGQALIRDVPDEYAIYKEKEFTYNNIRQPNRNGLLWDKSLNVDGIKTGHTSGAGYNL 252 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 V+SA +G+ LI+ ++G+ R S LL+ GF + + K+F + + Sbjct: 253 VSSATEGNMRLISAVMGSPTFKGREGDSKKLLTWGFRFFETVSPL-QVGKEFASEPI 308 >gi|146310988|ref|YP_001176062.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter sp. 638] gi|145317864|gb|ABP60011.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 400 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 14/282 (4%) Query: 6 VIIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + A+L P L A + L+D +G V+AE D +PASLTK Sbjct: 11 LAAGSALLFLFSPTLYAAEQAAPEAPPVDARAWILMDYASGKVLAEGNADEQLDPASLTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLI 112 +MT+YVV LK K L +TI K+A S K G +++ + K +I Sbjct: 71 IMTSYVVGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVI 130 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND +A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+ Sbjct: 131 IQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTKTTFKTVHGLDAPGQFSTARDMAL 190 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 L + D P+ + K + PN N + + + DGMKTG T +G+N+VAS Sbjct: 191 LGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVAS 250 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 A QGD LI+V+LG R S LL+ GF I Sbjct: 251 ATQGDMRLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 292 >gi|113460464|ref|YP_718526.1| penicillin-binding protein [Haemophilus somnus 129PT] gi|112822507|gb|ABI24596.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Haemophilus somnus 129PT] Length = 388 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 18/351 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ + + ++S P LS + Y L+D ++G V+A PD +P Sbjct: 1 MKKTKIALMSGLIS--LPALSQDIQYGIASPELSAQSYILMDYHSGAVLAAFNPDQRQHP 58 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKL 110 ASLTK+MT+YVV +K+ K LT +TI ++A S +++ + + Sbjct: 59 ASLTKMMTSYVVGDAIKQGKISLTDTVTIDESAWGKNFPGSSKMFLNLNQQVSVADLNRG 118 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +++ S ND VAIAE + +E+ F++ MN GL T+FM HG+ Y++ARDM Sbjct: 119 IVIVSGNDACVAIAEHIAGSERNFIELMNKYVAKFGLKNTNFMTVHGLDDDNQYSSARDM 178 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 AI+ I D P+ + K K N N + + DGMKTG T +G+N+V Sbjct: 179 AIIGRHIIHDLPEEYKIYAEKEFTFNKIKQHNRNGLLWDKSIKVDGMKTGHTNKAGYNLV 238 Query: 230 ASAI-QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQN 284 ASA+ + LI+V++G R S LL GF N K + + + Y N Sbjct: 239 ASAVNNNNMRLISVVMGVATHKGREIESKKLLQWGFANFETFKSLQANQSIVEEKVYYGN 298 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 S + E+ T + + + + +++ K ++ I + Sbjct: 299 TSKVQLGVLEDAYITLPKGRQNDVKTRYELNQKMLTAPLAKGQIVGKIIYQ 349 >gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 396 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + I S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKIDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|15614098|ref|NP_242401.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus halodurans C-125] gi|10174152|dbj|BAB05254.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus halodurans C-125] Length = 387 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 163/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR L I+++ ++ + + +A + +++ +TG V+ E D P Sbjct: 1 MRVILSSIVSVCLVVGMIAPVGLAAEKQPNLAKEASSAIVIERDTGQVLFEKNSDEKLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + K + S+NA+ S + G M++ + +K + + Sbjct: 61 ASMTKIMTLLLIMEAIDSGKITYDDMVRTSENAASMGGSQVFLEPGEEMSVRDMIKAIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE L TE++FV MN ++ LGL T+F+N +G+ + HYT+A D+A++ Sbjct: 121 ASGNDASVAMAEHLAGTEEEFVGMMNEKARQLGLKNTNFVNTNGLPEKDHYTSAYDLAMI 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNI 228 S + + + + ++ NTN V + G DG+KTGFT + + + Sbjct: 181 SKELLK-YEDITEFTSVYEDYLRKGTDKEFWLVNTNRLVKFYPGVDGLKTGFTKEAKYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNL 285 A+A++ +I V++GA RN +L F + + Y++ ++ Sbjct: 240 TATAVKNGMRVITVVMGAPTPKERNSQITEMLDFAFSQYQTHQVYERDTYMMDLNVRKGN 299 Query: 286 SNEVPNISEEVCT-TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP + E + K+ + + + + KES K ++ ++ Sbjct: 300 KKSVPIFTSESVSLVTKKGESIDNVTERVEWKESLLAPVHKGDVVGTLYLER 351 >gi|9971925|gb|AAG10487.1|AF279106_49 predicted penicillin-binding protein 6 precursor [uncultured marine gamma proteobacterium EBAC31A08] Length = 385 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 1/275 (0%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ L +++ ++ F+ + L Y L++ NT VIAE D PAS+TK+ Sbjct: 1 MKKLLFTLLSTSIFIQAQSFVPDSPELDLKSYILIEPNTNTVIAEFNSDLEIEPASMTKI 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT+YVV + L + IS+ A S + + G +T+ + LK ++++S ND Sbjct: 61 MTSYVVADQIANGLISLDDEVLISEKAWRMQGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE TE+ FV MN+ + +L ++ T F N+ G+ H+++A+D+A L+ Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYAASLEMNNTIFQNSTGLPDENHFSSAKDLANLTANYIN 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FP+ ++ K K N N + ADG+KTG T A+G+ +V SA +G L Sbjct: 181 KFPEEYALYKQKQFTFNNIKQLNRNKLLWRDDSADGVKTGHTEAAGYCLVGSAKRGGMRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 I V+ G+ N R S LL GF T +K ++ Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFFTTQKMLS 275 >gi|88810567|ref|ZP_01125824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis Nb-231] gi|88792197|gb|EAR23307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis Nb-231] Length = 340 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 130/232 (56%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D ++ V+ E D +PASLTK+MTAYVVFS LK K + +T+S+ A P S Sbjct: 1 MDHDSNQVLVEVNVDKRHDPASLTKMMTAYVVFSELKSKHIAIDDQVTVSEKAWREPGSR 60 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G + + L+ +IV+S ND +VA+AE + E F Q MN ++ LG+ TH++ Sbjct: 61 MFIEVGDKVPVKALLQGMIVQSGNDASVALAEHVAGNESTFAQVMNQYARTLGMEHTHYV 120 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 NA G+ HYTTA D A+LS + DFPQY F K G + N N + Sbjct: 121 NATGLPDPKHYTTAHDTALLSQALMRDFPQYHSMFAEKKYTYNGIEQYNRNKLLWRDPSV 180 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 DG+KTG T A+G+ + +SA + + LI+V++GA R + +LL+ GF Sbjct: 181 DGLKTGHTEAAGYCLASSAERDNMRLISVVMGAGSEEARLSDTQALLNYGFR 232 >gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH187] gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH187] gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 396 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|163740370|ref|ZP_02147764.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter gallaeciensis 2.10] gi|161386228|gb|EDQ10603.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter gallaeciensis 2.10] Length = 550 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 154/280 (55%), Gaps = 5/280 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++I ++M++ P A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 50 LVIFLSMVATAPPGAMAAPY----AAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 105 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI E Sbjct: 106 FEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIGE 165 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y Sbjct: 166 TLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEYY 225 Query: 186 HYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 226 NLFSRRSADAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATVF 285 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G +RN A LL +GF R K+ + YQ N Sbjct: 286 GGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGN 325 >gi|183598299|ref|ZP_02959792.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827] gi|188020471|gb|EDU58511.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827] Length = 401 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 18/290 (6%) Query: 2 RQFLVI--------IAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHP 50 ++F + + + + + F + + +A + L+D ++G ++A PD Sbjct: 3 KKFFTLKARYLGTGLGLLVAVSHFAYAAGTPVAPQVDAKAFVLMDYDSGKILASGNPDER 62 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTL 104 +PASLTK+MT+YVV +K K +T+ +A S K +++ Sbjct: 63 LDPASLTKMMTSYVVGQAIKAGKITPQDMVTVGVDAWATGNPVLKGSSLMFLKPKDRVSV 122 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + K ++++S ND ++A+A+ + ++ FV MN K LGL THF HG+ G Y Sbjct: 123 LDLNKGVVIQSGNDASIALADYVAGSQDSFVSLMNEYVKQLGLKNTHFKTVHGLDSEGQY 182 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCA 223 +TARDMAIL+ + D P + K + PN N + + L DG+KTG T Sbjct: 183 STARDMAILAQAMIRDVPDEYALHKEKEFTFNKIRQPNRNRLLWSQNLNVDGVKTGHTSG 242 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G N+VASA G LI+V+LGA R S LL+ GF I Sbjct: 243 AGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPI 292 >gi|330445965|ref|ZP_08309617.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490156|dbj|GAA04114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 391 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ F ++ A+ + F L+ A T Y L+D NTG V+ E + Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSALAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 NPASLTKLMT+YV +K+ + IS+NA S + GS + L + Sbjct: 61 LNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + LI++S ND +VAIAE + +E+ FV MN+ +K LG++++HF N HG+ YTT Sbjct: 121 FRGLIIQSGNDASVAIAEHVAGSEQAFVGLMNSWAKKLGMNSSHFANPHGLDHGDLYTTP 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGF 226 D+A+L + D P + K N N + + DGMKTG+T +G+ Sbjct: 181 YDIALLGQALIRDLPNIYPLYSEKSFTYNNITQRNRNGLLHDKSMNVDGMKTGYTSGAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ++ +SA +GD LIAV++G R S +LL+ GF Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKIRESESKALLNYGFRFFET 283 >gi|312127393|ref|YP_003992267.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] gi|311777412|gb|ADQ06898.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] Length = 386 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 4/313 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+ Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDRVIASQ 97 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K Sbjct: 98 NASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 LG+ T+F+N +G+ HYT+A D+AI+S + Y I+ K+ N Sbjct: 158 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTN 216 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL Sbjct: 217 TNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDW 276 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 GF N + + F + + N + E + +T +++ + K + Sbjct: 277 GFANFSMYSPYSKGYC-FGKVKVKNGIEKEVEAILSTDVKLLVKKGDESTVESKVTLPQQ 335 Query: 323 FEKITLLKNKITK 335 KI K Sbjct: 336 ISAPVKTGQKIGK 348 >gi|74316665|ref|YP_314405.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus denitrificans ATCC 25259] gi|74056160|gb|AAZ96600.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus denitrificans ATCC 25259] Length = 402 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 1/245 (0%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D +G V+ ++ PASLTKLMT++V L+ + +TIS+ A Sbjct: 50 AAKSWVLMDAASGSVLVDHRGRERLPPASLTKLMTSHVAALELQRGRIKENDLVTISEKA 109 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S + G+ + + + L+ +IV+S ND ++A+AE L E F MN +K LG Sbjct: 110 WRMGGSKMFVRVGNQVAVHDLLRGIIVQSGNDASIALAEHLAGGEDTFAALMNQEAKRLG 169 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 L+ THF+NA G GHY++A DMA L+ I + P + + K G K PN N Sbjct: 170 LADTHFVNATGWPAEGHYSSALDMAKLARAIIIEDPAHYGLYAEKEFVWNGIKQPNRNLL 229 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +G+ +VAS+ + Q +IA + G R +A LL+ GF N Sbjct: 230 LWRDPSVDGLKTGHTEEAGYCLVASSQRDGQRMIAAVFGTESEAARATETAKLLAYGF-N 288 Query: 267 KTDRK 271 D K Sbjct: 289 FFDSK 293 >gi|304397023|ref|ZP_07378902.1| Beta-lactamase [Pantoea sp. aB] gi|304355172|gb|EFM19540.1| Beta-lactamase [Pantoea sp. aB] Length = 420 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 101/358 (28%), Positives = 158/358 (44%), Gaps = 23/358 (6%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +R F ++ +A +S A + L+D +G V+ E+ D +PASLTK Sbjct: 30 LRHFAATSLLILAPISVFAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTK 89 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLI 112 +MT+YVV +K K +T+ ++A S K G + + K ++ Sbjct: 90 MMTSYVVGQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIV 149 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND +A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA+ Sbjct: 150 IQSGNDACIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMAL 209 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 ++ + D P+ + K + N N + T L DG+KTG T +G N+VAS Sbjct: 210 IAQALIRDVPEEYALNKEKEFTFNNIRQINRNRLLWSTNLKVDGVKTGHTSGAGNNLVAS 269 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------ 285 A +GD LI+V+LG R + S LL+ GF I F QQ + Sbjct: 270 ATEGDMRLISVVLGTASDAIRFRESEKLLTWGFRFFETVTPI-KADAPFAQQRVWFGDKS 328 Query: 286 -------SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + I + K N EA K++ + L I ++ Sbjct: 329 QVNLGVAKDAALTIPKGQMKNLKASFKLNAPQLEAPLKKNQVVGTIDFQLDGKTIEQR 386 >gi|119504244|ref|ZP_01626324.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2080] gi|119459752|gb|EAW40847.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium HTCC2080] Length = 386 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 17/339 (5%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + + Y L+D TG V+ E+ D PASLTKLMT+Y++ + + Sbjct: 18 ATAVTLVPAPPGINADAYLLMDFATGEVLVEHNIDTRLPPASLTKLMTSYILAEEVDAGR 77 Query: 74 AMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L +T+S+NA P S + G ++T+ + + + S ND VAIAE + Sbjct: 78 LSLDDEVTVSRNAWSQNPKFRGSSLMWIEPGKSVTVGELEQGIAISSGNDATVAIAEHIA 137 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E+ FV MN ++ L L+ATHF N HG+ H TTARD+ L+ D P + Sbjct: 138 GSEEAFVALMNRYAEELALTATHFENTHGLPNSDHLTTARDLGSLAIATIRDHPDRYRVY 197 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + N N + DG+KTG+T +G+ +VASA + LI+V+LG+ Sbjct: 198 RQQSYTYNDITQYNRNHLLREDPSVDGLKTGYTSVAGYGLVASAEREGMRLISVVLGSNS 257 Query: 249 RNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQNLSNEVPNISEEVC 297 +R + SLL+ GF + R ++ + L V I Sbjct: 258 TRSRKAETRSLLNYGFRFYQNLEVVTGATSLGRTRVWKGNAEAIDGGLLESVTVIVPRTQ 317 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + I ++ ++ +K + ++ L + ++ Sbjct: 318 AAAEVIATFDDPLQAPINK-GDVVGQLQVLLDGELLLER 355 >gi|288936359|ref|YP_003440418.1| beta-lactamase [Klebsiella variicola At-22] gi|288891068|gb|ADC59386.1| Beta-lactamase [Klebsiella variicola At-22] Length = 403 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 163/343 (47%), Gaps = 17/343 (4%) Query: 6 VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A+L I P + AE + + L+D +G V++E D +PASLTK+ Sbjct: 14 LAAGCALLFLIAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV +K K LT +T+ ++A S K G +++++ K +I+ Sbjct: 74 MTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVII 133 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++AIA+ + + FV MN +K +GL+ T FM HG+ G ++TARDMA+L Sbjct: 134 QSGNDASIAIADYVAGNQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALL 193 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + PN N + T L ADG+KTG T +G+N+V+SA Sbjct: 194 TKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSA 253 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNE 288 QGD LIAV+LG R S LL+ GF I ++ + + + S Sbjct: 254 TQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQRVWFGDSSEA 313 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 E T + N + ++ EK ++ Sbjct: 314 KLGAGEAGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGT 356 >gi|22126741|ref|NP_670164.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Yersinia pestis KIM 10] gi|45441099|ref|NP_992638.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Microtus str. 91001] gi|149366701|ref|ZP_01888735.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125] gi|218928470|ref|YP_002346345.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92] gi|21959762|gb|AAM86415.1|AE013888_11 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Yersinia pestis KIM 10] gi|45435958|gb|AAS61515.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Microtus str. 91001] gi|115347081|emb|CAL19973.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92] gi|149291075|gb|EDM41150.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125] Length = 432 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 65 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 124 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 125 VGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 184 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 185 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 244 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T +G+N+VASA G LI+V+LGA R Sbjct: 245 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFS 304 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 305 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 334 >gi|330828593|ref|YP_004391545.1| Penicillin-binding protein [Aeromonas veronii B565] gi|328803729|gb|AEB48928.1| Penicillin-binding protein [Aeromonas veronii B565] Length = 398 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 153/345 (44%), Gaps = 24/345 (6%) Query: 1 MRQFLVIIAMAMLSNIFP----------------FLSIAETNKLPYYTLLDTNTGHVIAE 44 M +F + +A L ++ + A + L+D +G V+AE Sbjct: 1 MSKFARSVLLASLISVTAQANTPVPTPTPNAMPMVVPAAPEISAKAHILIDYYSGQVLAE 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGST 101 + PASLTK+MT+Y++ L + T +TIS+NA S + G Sbjct: 61 QNAEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKNYSDSSKMFIEVGKQ 120 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 +++D+ K +I++S ND VA+AE L + F MN+ + LG++ +HFMN HG+ Sbjct: 121 VSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGMNDSHFMNPHGLDAE 180 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGF 220 GHY+TA DMA L + D P+ + K G N N + L DG+KTG Sbjct: 181 GHYSTAHDMARLGQALIRDLPEEYKIYSQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGH 240 Query: 221 TCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 G+N+V+SA LIAV+LGA +R S LL+ GF + Sbjct: 241 VSQVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYGFRFFQSLTPYKAGTEL 300 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 Q+ + P + V K++ T+ + K +D E Sbjct: 301 VTQKIWMGDKPEVKLGV---DKDVSVLVTRGQGNNLKADFQLDSE 342 >gi|307130748|ref|YP_003882764.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] gi|306528277|gb|ADM98207.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] Length = 399 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 163/356 (45%), Gaps = 24/356 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +V+ A L + P L +T P + L+D +G V+AE+ D +PASLTK+ Sbjct: 10 VVVAAATALMTVSPGLRAEQTPPPPQIEAKAFILIDYASGRVLAESNADARLDPASLTKI 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 M++YV+ +K K +T+ K+A S K G + + K +++ Sbjct: 70 MSSYVIGQAIKVGKITPEDKVTVGKDAWATGNPALRGSSLMFLKPGDQIPVSELNKGMVI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA L Sbjct: 130 QSGNDASIALADYVAGSQDAFVSLMNQYAATLGLANTHFLTVHGLDTPGQYSTARDMARL 189 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 + + D P K + PN N + + L DG+KTG+T +G ++VASA Sbjct: 190 TQALIRDVPGEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTGGAGHSLVASA 249 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----------DRKKINYIIKDFY 281 + D LI+V+LGA R + S LL+ GF +++ + + Sbjct: 250 VDSDMRLISVVLGAPSDAVRFRESEKLLTWGFRFFETVTPVRSDAPFTTQRVWFGTEKQV 309 Query: 282 QQNLSNEVPNISEEVCTTQ-KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + +++ + + + K +A K+ + L N I ++ Sbjct: 310 RLSVAQDAALTAPKGQMKNLKASFTLAQPQLKAPLKKGQVVGTIDFQLDGNSIGQR 365 >gi|296103671|ref|YP_003613817.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058130|gb|ADF62868.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 388 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 141/312 (45%), Gaps = 27/312 (8%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F + + L+D TG ++ NPASLTKLMT YVV + + Sbjct: 27 FSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDD 86 Query: 79 PITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 +T+ ++A S K+G +++ + + LIV S ND VA+A+ + + Sbjct: 87 IVTVGRDAWAKGNPVFDGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADHVAGGQP 146 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +FV+ MN+ + L L THF HG+ G +++A D+A+LS I P++ H + K Sbjct: 147 QFVKMMNDYVQKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKS 206 Query: 193 LEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L G N N + + DG+KTG T +GFN++AS + G + LIAV++GA Sbjct: 207 LTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASTVDGQRRLIAVVMGADSPKG 266 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIK--------------------DFYQQNLSNEVPN 291 R + LL G N + ++ K DF+ EVPN Sbjct: 267 REDQARKLLHWGQQNFDTVQILHNGKKVGTERIWYGDKEQVNLGTDQDFWLALPKAEVPN 326 Query: 292 ISEEVCTTQKEI 303 I + KE+ Sbjct: 327 IKAKYVLDTKEL 338 >gi|254478674|ref|ZP_05092045.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium pacificum DSM 12653] gi|214035361|gb|EEB76064.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium pacificum DSM 12653] Length = 377 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 154/318 (48%), Gaps = 10/318 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++FL ++ L + + K L++ TG ++ E P PAS+TK+MT Sbjct: 3 KKFLALLISTFLLFNTAYADVM-NLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVMT 61 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +T + SK+A + + + G MT+D+ +K + + SAND +V Sbjct: 62 LLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 121 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE+ FV+ MN +K LG T F NA G+ + GH TT D+A++S + Sbjct: 122 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVK-H 180 Query: 182 PQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P Y K ++ K+ NTN + + G DG+KTG T + + + A+A +GD L Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYQGVDGIKTGSTSEALYCMAATAKRGDTRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVPNIS--- 293 IAV+ GA D TR +A LL GF N K K + K + V IS Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVKVASKGEVLGKIKVLKGNKEMVEGISLKD 300 Query: 294 EEVCTTQKEIINYNTQMK 311 E V + E N +++ Sbjct: 301 EYVVVKKGEGKNIKKEVE 318 >gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 396 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|296133162|ref|YP_003640409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296031740|gb|ADG82508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 389 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 164/356 (46%), Gaps = 22/356 (6%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWN 52 +++ + + + M++ +FP A + P L+D TG V+ E D Sbjct: 5 LKKLIGLFLLTTMITILFPTQGFAAPEQQPLLETTAESAILIDAVTGKVLFEKAADVERP 64 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT V L + K L+ + S+NAS S + +++ L + Sbjct: 65 PASVTKVMTLLVALEQLAKGKISLSDKVVTSENASGMGGSQVYLEPNEELSMREMLISIA 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V SAND VA+AE + + + +V+ MN+ +K LGL THF NA+G+ GHYT+ARD+A+ Sbjct: 125 VGSANDACVAVAEHIAGSHEAYVKMMNDKAKELGLKHTHFANAYGLPAEGHYTSARDLAV 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + +P + IK +++G ++ NTN + + G DG KTG+T + + + + Sbjct: 185 MMREALK-YPLFSKLTSIKRYDLRGGEFVLWNTNKLLWWYDGCDGGKTGWTSEAKYCLAS 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQN 284 + + LIAV++ + + + S L + GF KK+ I Q + Sbjct: 244 TCKRNGLRLIAVVMATPEPRSHFRESMRLYNYGFARYEAANIAEQGKKLGKIRVSKGQWD 303 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQM-----KEAKDKESHFIDFEKITLLKNKITK 335 + V + + E + ++ +A K+ + + K ++ K Sbjct: 304 WVDAVTASDVAIVVPKGEKKSVTYKLDLLPYVKAPVKKGQKVGQVTVMKDKEQVLK 359 >gi|309786587|ref|ZP_07681209.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|308925554|gb|EFP71039.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] Length = 364 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A Sbjct: 2 DARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA 61 Query: 87 SEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S K G +++ + K +I++S ND +A+A+ + +++ F+ MN Sbjct: 62 WVTGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNG 121 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + Sbjct: 122 YAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQ 181 Query: 201 PNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L Sbjct: 182 PNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 241 Query: 260 LSMGFYNKTDRKKI 273 L+ GF I Sbjct: 242 LAWGFRFFETVTPI 255 >gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 396 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|241206582|ref|YP_002977678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860472|gb|ACS58139.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 377 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 121/335 (36%), Positives = 187/335 (55%), Gaps = 16/335 (4%) Query: 2 RQFLVIIAM-------AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R F + A+ A + S+A+ N + L+D TG V+ W PA Sbjct: 4 RHFRLFAALRPLSFVSAATAVFLGSFSLAQANP---HILVDVQTGRVLEHEEAFRKWYPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMT Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VK Sbjct: 61 SLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVK 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SANDIAVA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ Sbjct: 121 SANDIAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLT 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 ++ DFPQY YF ++G + P+ N +G F GADGMKTGF CASGFN + SA + Sbjct: 181 VALRRDFPQYAGYFSLEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 ++L++V+LG R +A+LL GF + ++ + ++V +IS Sbjct: 241 NGRTLVSVVLGTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQ--DQVTDISA 298 Query: 295 EVCTTQKEIINYNTQMKEAKDKES----HFIDFEK 325 ++C+ + + T+ + + K +D + Sbjct: 299 DICSAKGAKVRSETRDEVGRMKVQSPYIQPMDHDP 333 >gi|153001830|ref|YP_001367511.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185] gi|160876563|ref|YP_001555879.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195] gi|151366448|gb|ABS09448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185] gi|160862085|gb|ABX50619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195] Length = 391 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I + ++ P ++ A + + L+D N+G +IAE+ NPASLTK Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P H + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G + R S LL+ GF ++I Y K Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ 360 >gi|126175479|ref|YP_001051628.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS155] gi|125998684|gb|ABN62759.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella baltica OS155] Length = 391 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I + ++ P ++ A + + L+D N+G +IAE+ NPASLTK Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P H + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G + R S LL+ GF ++I Y K Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ 360 >gi|293606885|ref|ZP_06689233.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] gi|292814737|gb|EFF73870.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii ATCC 43553] Length = 386 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 145/281 (51%), Gaps = 9/281 (3%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +++A A LS+ + LLD +G VIA + PASLTK Sbjct: 3 MKKLAASLLVATACLSSAMAQSMPQPELSAKAWLLLDETSGQVIASHAATTRIEPASLTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116 +MTAYVVF L +K+ + IS A + P S + GS +T+D+ L+ L+++S Sbjct: 63 IMTAYVVFDALSKKELSANQTVVISTRAWKVPAGSSKMFLEPGSKVTVDDLLRGLMIQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+AE++ + + FV MN+T+ LGL ATHF + HG+ G Y+TA D+++L+ R Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAARLGLHATHFASPHGLPDPGTYSTASDLSVLATR 182 Query: 177 IKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ- 234 D+PQ + K PN N + DG+KTG T ++G+ IVA+A + Sbjct: 183 FIRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTDSAGYCIVATARRP 242 Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + LI V++G R + S LL GF K Sbjct: 243 NGSDQRRLITVVVGTASDKLRTQESRQLLEWGFQGFNTIKL 283 >gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames] gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0488] gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0442] gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0193] gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0465] gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0389] gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0174] gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis Tsiankovskii-I] gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W] gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus NVH0597-99] gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB108] gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH820] gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB102] gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. CDC 684] gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0248] gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. CNEVA-9066] gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055] gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Western North America USA6153] gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger B] gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Vollum] gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Australia 94] gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. Ames] gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. 'Ames Ancestor'] gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0488] gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0193] gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0442] gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0389] gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0465] gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0174] gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis Tsiankovskii-I] gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W] gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB108] gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus NVH0597-99] gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus AH820] gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus 03BB102] gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. CDC 684] gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis str. A0248] gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 396 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|163941818|ref|YP_001646702.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163864015|gb|ABY45074.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 396 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 94/361 (26%), Positives = 159/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K L + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK- 278 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 279 ---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 + Sbjct: 360 R 360 >gi|89899727|ref|YP_522198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens T118] gi|89344464|gb|ABD68667.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Rhodoferax ferrireducens T118] Length = 414 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 3/265 (1%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 L+ + L+D ++G V+A PD P PASLTK+MT+Y+V L+ Sbjct: 52 LAAQTTLAGSPPALPAKAWLLMDFDSGEVLASANPDEPLPPASLTKMMTSYLVEQALRSG 111 Query: 73 KAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K T +++S+NA S S T+ + L+ +I++S ND + AIAE + Sbjct: 112 KLKQTDLVSVSQNAWCRGSSTESCMYLPLNSQATVIDILRGIIIQSGNDASKAIAEHMAG 171 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E+ F + MN + LG++ THF+N G+ H ++ARD+AIL+ I D Y + Sbjct: 172 SEEGFAKLMNAEALRLGMTHTHFVNPTGLPDPAHKSSARDLAILARAIIHDSVDYYPIYA 231 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + G K N N + T DG+KTG T +G+ +V S+ + LI VIL Sbjct: 232 EREFKYNGIKQGNRNALLYTDPTVDGLKTGHTEDAGYCLVTSSKRNGMRLITVILNTHSA 291 Query: 250 NTRNKVSASLLSMGFYNKTDRKKIN 274 R + +LL GF + I Sbjct: 292 QARADETRTLLGWGFSSFEKATPIQ 316 >gi|20807763|ref|NP_622934.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20516318|gb|AAM24538.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 377 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 154/318 (48%), Gaps = 10/318 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++FL ++ L + + K L++ TG ++ E P PAS+TK+MT Sbjct: 3 KKFLALLISTFLLFNTAYADVM-NLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVMT 61 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +T + SK+A + + + G MT+D+ +K + + SAND +V Sbjct: 62 LLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 121 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE+ FV+ MN +K LG T F NA G+ + GH TT D+A++S + Sbjct: 122 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVK-H 180 Query: 182 PQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P Y K ++ K+ NTN + + G DG+KTG T + + + A+A +GD L Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGDTRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVPNIS--- 293 IAV+ GA D TR +A LL GF N K K + K + V IS Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVKVASKGEVLGKIKVLKGNKEMVEGISLKD 300 Query: 294 EEVCTTQKEIINYNTQMK 311 E V + E N +++ Sbjct: 301 EYVVVKKGEGKNIKKEVE 318 >gi|56420846|ref|YP_148164.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261417853|ref|YP_003251535.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|319767335|ref|YP_004132836.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] gi|56380688|dbj|BAD76596.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Geobacillus kaustophilus HTA426] gi|261374310|gb|ACX77053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|317112201|gb|ADU94693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] Length = 391 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L++ +TG V+ E P PAS+TK+MT +V + E K + S+ Sbjct: 36 ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF NA G+ HY++A DMA+++ + + Y ++ K Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFW 214 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTG+T + + + A+A + +IAV+ GA +RN + Sbjct: 215 LVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274 Query: 260 LSMGFYNKTD--RKKINYIIK--DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F K N + + + S+ SE V K+ + K K Sbjct: 275 LDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKV 334 Query: 316 KESHFIDFEKITLLKNKITKK 336 K++ K L I K+ Sbjct: 335 KDNVKAPVRKGDELGVLILKQ 355 >gi|146343356|ref|YP_001208404.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146196162|emb|CAL80189.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] Length = 476 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 185/337 (54%), Gaps = 13/337 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L IIA+A + P ++ AE L++ +TG V+ +PW PAS+TKLMTAYV Sbjct: 13 LKIIAVAAALMLAPRMAHAEAL-----LLVEADTGKVLEAQNATYPWYPASVTKLMTAYV 67 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K+ KA L T +T+S A+ PS ++ G+ +T+DNALK+++VKSAND+AV +A Sbjct: 68 TLKAVKDGKASLDTLLTVSPTAASQSPSKMGYRPGTQVTVDNALKMMLVKSANDMAVVLA 127 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + F MN T++ LG++ T ++N +G+ G T+ARD+AIL+ I D P+Y Sbjct: 128 EGIGGSIDGFSIMMNETAQRLGMTQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEY 187 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 ++ I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+L Sbjct: 188 EYFVHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVL 247 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ-QNLSNEVPNISEEVCTTQKEI 303 GA R + +L GF N + + + Q + PN+ +++C+ ++ Sbjct: 248 GASSGQMRAVRAIQMLDRGF-NTNQLSWLKAPLGNVEQLVPVDATPPNLRDDMCSGRRHR 306 Query: 304 INYNTQMKEAKDK------ESHFIDFEKITLLKNKIT 334 + +EA ++ + + L ++I Sbjct: 307 PASDDDGEEASNEGETTTGGTLLAGLQAPALKPSEIL 343 >gi|239996931|ref|ZP_04717455.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas macleodii ATCC 27126] Length = 394 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 137/266 (51%), Gaps = 4/266 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FLVI + +N A + + L D TGHVIA D PASLTK+MT Y Sbjct: 17 FLVIGTLLHTANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76 Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V+ L+ L +TIS+NA S + G+ +++ + L+ ++V+S ND Sbjct: 77 VIGKELQAGNISLDDEVTISENAWAKKFPDSSKMFIEVGTQVSVRDLLRGIVVQSGNDAC 136 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN + +LG+S +H++NAHG+ HYTT RDMAILS + + Sbjct: 137 VAMAEHVAGSESAFASMMNAHTASLGMSGSHWVNAHGLHDPDHYTTPRDMAILSRALIAE 196 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + K G K N N + L DG+KTG T +G++++ SA QG L Sbjct: 197 TPEMYKIYSEKEFTYNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLITSAEQGGMRL 256 Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265 I+V++G R + LL GF Sbjct: 257 ISVVMGTDSERARKVENKKLLKYGFR 282 >gi|50121610|ref|YP_050777.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043] gi|49612136|emb|CAG75586.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043] Length = 401 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 143/278 (51%), Gaps = 12/278 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L PF + +P + L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGAVPFTYAEQLPAVPQIDAKAFILIDHDSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YV+ LK K T +T+ K+A S K G + + K ++++S Sbjct: 75 YVIGQALKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+A+ + ++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L Sbjct: 135 NDASIALADYVAGSQDSFVSLMNNYAKALNLTNTHFLTVHGLDAPGQYSTARDMALLGQA 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K + PN N + T L DG+KTG T +G N+VASA +G Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + LI+V+LGA + R + S LL+ GF I Sbjct: 255 NMRLISVVLGAQTDSIRFRESEKLLTWGFRFFETVTPI 292 >gi|311107988|ref|YP_003980841.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8] gi|310762677|gb|ADP18126.1| D-alanyl-D-alanine carboxypeptidase DacC 1 [Achromobacter xylosoxidans A8] Length = 386 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 145/281 (51%), Gaps = 9/281 (3%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +I+A A +S A + LLD +G VIA + PASLTK Sbjct: 3 MKKLAASLIVAAACMSGAMAQTVPAPALSAKAWLLLDETSGQVIASHAATTRIEPASLTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116 +MTAYVVF L +K+ T +T+S A + P S + GS +++D+ L+ L+++S Sbjct: 63 IMTAYVVFEALSKKELSATQLVTVSTRAWKVPAGSSKMFLEPGSKVSVDDLLRGLMIQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+AE++ + + FV MN+T+ LGL AT F + HG+ Y+TA D++IL+ R Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAARLGLHATRFASPHGLPDPETYSTASDLSILATR 182 Query: 177 IKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ- 234 D+PQ + K PN N + DG+KTG T ++G+ IVA+A + Sbjct: 183 FIRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTESAGYCIVATAQRP 242 Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + LI V++G R + S LL GF K Sbjct: 243 NGADQRRLITVVVGTASDKLRTQESRELLEWGFQGFNTIKL 283 >gi|213619044|ref|ZP_03372870.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 305 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 15/293 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 FN++ASA+ G + LIAV++GA R + + LL G N + ++ K Sbjct: 243 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKK 295 >gi|163795501|ref|ZP_02189467.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] gi|159179100|gb|EDP63633.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] Length = 385 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 15/343 (4%) Query: 2 RQFLVII-AMAMLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R++L + +A+L P + A L+D +TG V+ E PA Sbjct: 3 RRYLSFVGFLAVLVTTVPLILGGARPVAALDTSAREAILMDYDTGQVLFEKNSTELMPPA 62 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT ++ F LK+ + +T I IS+NA S + GS + L + L +IV+ Sbjct: 63 SMTKIMTVFLAFERLKDGRLKMTDEIPISENAWRKGGSKMFVEVGSRVVLSDLLMGIIVQ 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND +A+AE++ +E+ F + M ++ +GL + F N+ G H TA D+A+L+ Sbjct: 123 SGNDATIALAEAISGSEEAFGELMTTRAREIGLERSVFRNSTGWPDPEHRMTAHDLAVLA 182 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 FP Y F K N N + +G DG+KTG T +G+ + SA + Sbjct: 183 AETIRRFPDYYSLFSETSFTYNKIKQGNRNPLLYKAMGVDGLKTGHTENAGYGLTVSAKR 242 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVP 290 GD+ LI V+ G R+ S L+ GF + +K + + + + +VP Sbjct: 243 GDRRLILVVNGLSSVRERSDESERLIEWGFREFENLTFAKKGVPVETAEVWLGD-RPKVP 301 Query: 291 NISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 +S+ V + ++ + + + + I +L+ Sbjct: 302 LVSDRDIVVAVKRAARKEMTVTVEYSGPIPAPIVAGQPIAMLR 344 >gi|123441794|ref|YP_001005778.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088755|emb|CAL11560.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 405 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 144/295 (48%), Gaps = 11/295 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ + +L+ + + A Y L+D N+G V+AE D +PASLT Sbjct: 18 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 77 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + L + K + Sbjct: 78 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNSALRGSSLMFLKPGDQVKLSDLNKGI 137 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MNN +K LGL+ THFM HG+ G Y+TA DMA Sbjct: 138 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTHFMTVHGLDAPGQYSTAHDMA 197 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +L + D P + K + N N + T L DGMKTGFT +G N+VA Sbjct: 198 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 257 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 258 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPI-KATKPFVTQKV 311 >gi|238784923|ref|ZP_04628922.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] gi|238714138|gb|EEQ06151.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] Length = 401 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 15/297 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 +++F + +L+ P A+ +P Y L+D N+G V+AE D +PAS Sbjct: 10 IKKFTFSAGLLLLA--LPTAHAADDPAVPPVDAKAYVLMDYNSGKVLAEANGDQRLDPAS 67 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTK+M++YV+ +K K +T+ K+A S K G + L + K Sbjct: 68 LTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNK 127 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 ++++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TARD Sbjct: 128 GIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLTNTNFMTVHGLDAPGQYSTARD 187 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA+L + D P+ + K + N N + T L DGMKTGFT +G N+ Sbjct: 188 MAVLGQALIRDVPEEYALHKEKEFTFNMIRQINRNRLLWNTNLNVDGMKTGFTTGAGHNL 247 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 VASA G LI+V+LGA R S LLS GF I K F Q + Sbjct: 248 VASATDGPMRLISVVLGAPSDRVRFSESEKLLSWGFRFYETVVPI-KTTKPFVTQKV 303 >gi|229543944|ref|ZP_04433003.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1] gi|229325083|gb|EEN90759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1] Length = 387 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 153/350 (43%), Gaps = 19/350 (5%) Query: 1 MRQFLVIIAMAMLSN--IFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ + ++ ML+ + P AE + L++ TG V+ P Sbjct: 1 MKKIIGLVTCFMLAAGVLVPEAFAAEKKNELAPEAKSAILIEQATGEVLYSKNSHEELPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ L + + + + S+ A+ S + G MT++ LK + + Sbjct: 61 ASMTKIMTMLLIMEALDKGEIKMDEKVRTSEYAASMGGSQIFLEPGEEMTVEQMLKGIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AVA+AE + +E+ FV MN +K LGL THF N G+ GHY++A DMAI+ Sbjct: 121 GSANDAAVAMAERIGGSEEAFVDKMNERAKALGLKNTHFENVTGLPVKGHYSSAYDMAIM 180 Query: 174 SWRIKTDF------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + ++ +Y Y ++ K NTN V + G DG+KTGFT + F Sbjct: 181 AKQLLKHHGITHFTGKYEDY--LREGSDKKFWLVNTNKLVRHYPGVDGLKTGFTNEAKFC 238 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + A+A + +IAV+ GA RN + +L F T + Sbjct: 239 LTATAKKNGMRVIAVVFGAPSTKVRNAQVSKMLDYAFSQYTSHPLYKKGAALDQVKVSKG 298 Query: 288 EV----PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + SE V K+ + + K K K++ +K + Sbjct: 299 SMRHVRAVTSEPVSVLTKKGVKLSNLKKTVKLKKNVQAPVQKGDEIGTLT 348 >gi|227112044|ref|ZP_03825700.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 401 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 12/278 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L + PF + +P Y L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YV+ +K K T +T+ K+A S K G + + K ++++S Sbjct: 75 YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+A+ + ++ FV MNN +K L L+ T+F HG+ G Y+TARDMA+L Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFRTVHGLDAPGQYSTARDMALLGQA 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K + PN N + T L DG+KTG T +G N+VASA +G Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATEG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + LI+V+LGA R + S LL+ GF I Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLTWGFRFFETVTPI 292 >gi|329905874|ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gi|327547445|gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 403 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 13/285 (4%) Query: 1 MRQFLVIIAMAM--LSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNP 53 M+ F+ +A + LS++F + A+T P + LLDT +G V+A P P Sbjct: 18 MKIFIAALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEP 77 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKLL 111 ASLTK+MTAYV F +KEK+ L + +S A + PS+ + +++D+ L L Sbjct: 78 ASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGL 137 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +V+S ND AVA+AE++ TE+ FV MN +K +GL+ T F N HG+ +Y+TA+D++ Sbjct: 138 MVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLS 197 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 L+ + TD+P++ +K PN N + DGMKTG T A+G+ I+AS Sbjct: 198 KLAAAVITDYPEFYKIDSVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIAS 257 Query: 232 AIQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 A + G++ LI+V+LGA +R + S LL+ GF N K Sbjct: 258 AKRPNGSGERRLISVVLGANSDQSRTQESQKLLNWGFQNFDTVKL 302 >gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 396 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKMKQDKTEETAPKLAEQASSAIVIEQDTGKVLFD 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 299 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 359 Query: 336 K 336 K Sbjct: 360 K 360 >gi|39937326|ref|NP_949602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39651184|emb|CAE29707.1| possible D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhodopseudomonas palustris CGA009] Length = 484 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 177/320 (55%), Gaps = 6/320 (1%) Query: 3 QFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FL I+ A+LS + P ++ AE L++ +TG V+ + +PW+PAS+TKLMT Sbjct: 13 SFLTIVVAALLSLTVLPRVANAEAL-----LLIEADTGKVLQADNATYPWHPASVTKLMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV Sbjct: 68 LYVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D Sbjct: 128 VLAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDL 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIA Sbjct: 188 PEYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R +A LL GF T + ++ P++ +E+C ++ Sbjct: 248 VVLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKR 307 Query: 302 EIINYNTQMKEAKDKESHFI 321 + + A + + Sbjct: 308 KRPASDEDETVANALSGNPV 327 >gi|302871646|ref|YP_003840282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] gi|302574505|gb|ADL42296.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] Length = 386 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 4/313 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+ Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVVASQ 97 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K Sbjct: 98 NASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 LG+ T+F+N +G+ HYT+A D+AI+S + Y I+ K+ N Sbjct: 158 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTN 216 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G G+KTG T + F I ASA++ LIAVI+GA D TR + +L Sbjct: 217 TNKLVRFYRGCTGVKTGSTDKAKFCISASALRNGLHLIAVIMGAPDSKTRFNDATKVLDW 276 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 GF N + + F + + N + E + +T +++ + K + Sbjct: 277 GFANFSMYSPYSKGFC-FGKVKVKNGIEKEVEVILSTDVKLLVKKGDESTVESKVTLPQQ 335 Query: 323 FEKITLLKNKITK 335 KI K Sbjct: 336 ISAPVKTGQKIGK 348 >gi|297529521|ref|YP_003670796.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] gi|297252773|gb|ADI26219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] Length = 391 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L++ +TG V+ E P PAS+TK+MT +V + E K + S+ Sbjct: 36 ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF NA G+ HY++A DMA+++ + + Y ++ K Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFW 214 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTG+T + + + A+A + +IAV+ GA +RN + Sbjct: 215 LVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274 Query: 260 LSMGFYNKTD--RKKINYIIK--DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F K N + + + S+ SE V K+ + K K Sbjct: 275 LDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKV 334 Query: 316 KESHFIDFEKITLLKNKITKK 336 K++ K L I K+ Sbjct: 335 KDNVKAPVRKGGELGVLILKQ 355 >gi|71905933|ref|YP_283520.1| penicillin-binding protein 6 [Dechloromonas aromatica RCB] gi|71845554|gb|AAZ45050.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Dechloromonas aromatica RCB] Length = 391 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 83/268 (30%), Positives = 147/268 (54%), Gaps = 7/268 (2%) Query: 9 AMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 A +LS + ++A+ +P + LL+ + V+ D PASLTKLMTA Sbjct: 20 AFILLSIVTAGQAMAQQLPVPPALAAKSWLLLEVGSNQVLTAEKSDERLEPASLTKLMTA 79 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F+ +++K L+ + +S+ A S + + + +++ +K +IV+S ND V Sbjct: 80 YLTFAAIRQKTIGLSQTLPVSEKAWRTGGSKMFVRVDTQVPVEDLIKGMIVQSGNDACVT 139 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E+ F Q MN ++ LG++ +HF+N+ G+ HYTTARD+++L+ + DFP Sbjct: 140 LAEGIAGSEENFAQMMNREAQRLGMTNSHFINSTGLPDPQHYTTARDLSLLASALIRDFP 199 Query: 183 Q-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + Y Y+ +K PN N + DG+KTG T A+G+ +++SA++ + L++ Sbjct: 200 EDYKKYYSMKEFRYNNITQPNRNRLLFIDPTVDGVKTGHTEAAGYCLISSALRDKRRLLS 259 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTD 269 V+LG + R S LL+ GF + Sbjct: 260 VVLGTTSDSARATESQKLLNWGFISYDS 287 >gi|312793772|ref|YP_004026695.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180912|gb|ADQ41082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 386 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 17/350 (4%) Query: 1 MRQ-FLVIIAMAMLSN------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47 MR+ +I ML + + L+D +TG ++ E Sbjct: 1 MRKTITFLIVFLMLFGNSHIACKKVFGESLQTQTPSLEISAKSAILVDFDTGRILYEKNS 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 +PAS+TK+MT ++ +++ + L+ + S+NAS S K+ MT++ Sbjct: 61 HEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGSQVYLKENEEMTVEEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNFVNPYGLDAENHYTSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASG 225 D+AI+S + Y I+ K+ NTN V + G G+KTG T + Sbjct: 181 YDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAK 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 F + ASA++ LIAVI+GA D TR + LL GF N + + F + + Sbjct: 240 FCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFANFSMYSPYSKGYC-FGKVKI 298 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 N + E + +T +++ + K + KI K Sbjct: 299 KNGIEKEVEAILSTDVKLLVKKGDESTVESKVALPQQISAPVKAGQKIGK 348 >gi|326391736|ref|ZP_08213259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325992236|gb|EGD50705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 381 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 96/322 (29%), Positives = 157/322 (48%), Gaps = 13/322 (4%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ +L S + A+T K L++ NTG ++ E P PAS+T Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIEANTGQILYEKDSHKPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + GADG+KTG T + + + A+A +G Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAVSVV 301 Query: 294 ----EEVCTTQKEIINYNTQMK 311 E + + E N T+++ Sbjct: 302 CRDDEYILIKKGEGKNIKTEVE 323 >gi|167772329|ref|ZP_02444382.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM 17241] gi|167665432|gb|EDS09562.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM 17241] Length = 391 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 151/315 (47%), Gaps = 9/315 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L++ +TG V+ E D PAS+TK+MT +V L + L +T S+ Sbjct: 42 SLPARSAILIEQSTGRVLFEKNADEQLPPASITKVMTLLLVMEALDSGQIALGDMVTCSE 101 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A S FK G +++D+ LK + SAND +VA+AE + +E+ FV MN + Sbjct: 102 HAQSMGGSQIWFKAGEQLSVDDLLKAAAISSANDASVALAEHVAGSEEAFVALMNEKAAQ 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPN 202 LG++ THF+NA G+ GH TTARD+A +S + +P+ Y E++G + N Sbjct: 162 LGMTNTHFVNATGLDADGHLTTARDIAAMSRALL-AYPKITEYSGTWMSELRGGATQLVN 220 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G G+KTG T +G + ASA +G SLIAV LG+ R + LL Sbjct: 221 TNKLVRFYDGCTGLKTGTTDGAGSCLSASATRGGLSLIAVTLGSPTSAERFSAARGLLDY 280 Query: 263 GFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320 GF N T + + + + ++ +V +SE T +I K + Sbjct: 281 GFANYTRVELPPLEELAPVPVRGGVAPQVGVLSE----TPGYVIVRTADKDAVKQDVTLL 336 Query: 321 IDFEKITLLKNKITK 335 D + + + Sbjct: 337 PDVQAPVETGQLLGR 351 >gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis str. Al Hakam] gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] Length = 398 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 26/361 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M++ I+ ML +S A++ K +++ +TG V+ + Sbjct: 3 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 62 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+ Sbjct: 63 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 122 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY Sbjct: 123 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 182 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 +TA DMAI++ + +P Y ++ K NTN V + G DG+KTG Sbjct: 183 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 241 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 FT + + + ASA + +I+V++GA RN LL F +K K Sbjct: 242 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKI 301 Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 Q + + S+ V K+ N + +E ++ +K L + K Sbjct: 302 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIK 361 Query: 336 K 336 K Sbjct: 362 K 362 >gi|261343387|ref|ZP_05971032.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] gi|282568528|gb|EFB74063.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] Length = 401 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 143/278 (51%), Gaps = 12/278 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 I ++ML + A+T P + L+D ++G ++A ++PD +PASLTK+MT+ Sbjct: 15 IGLSMLVVMSSSAYAAQTPVAPQIDAKAFVLMDYDSGKILASSHPDERLDPASLTKIMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YVV +K K +T+S+ A S K +++ + K ++++S Sbjct: 75 YVVGQAVKAGKITPQDMVTVSEAAWATGNPVLKGSSLMFLKPKDQVSVLDLNKGIVIQSG 134 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+AE + +++ FV MN+ + +GL+ THF HG+ G Y+TARDMA+L+ Sbjct: 135 NDASIALAEYVAGSQESFVDLMNSYVQKIGLTNTHFKTVHGLDSEGQYSTARDMAVLAQA 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQG 235 + D P + K + PN N + + L DG+KTG T +G N+VASA G Sbjct: 195 LIRDVPDEYILHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V+LGA R S LL+ GF I Sbjct: 255 PMRLISVVLGAPSDKVRFSESEKLLTWGFRFFETVTPI 292 >gi|217972275|ref|YP_002357026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223] gi|217497410|gb|ACK45603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223] Length = 391 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I + ++ P ++ A + + L+D N+G +IAE+ NPASLTK Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P H + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMDVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G + R S LL+ GF ++I Y K Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ 360 >gi|148244582|ref|YP_001219276.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius okutanii HA] gi|146326409|dbj|BAF61552.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius okutanii HA] Length = 375 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 4/293 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +FL I+ + NI + I A Y+++D N+G VIA N + PASLTKL Sbjct: 8 KFLTILICSFTLNIQAAIFITPKAPEISAVAYSIVDYNSGKVIASNKQHYKRAPASLTKL 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAYV+F + + L + ISK A + S S + G TM L+ LK +I++S ND Sbjct: 68 MTAYVIFQLISNDRIKLEDEVRISKKAWKTGGSKSFVEVGKTMKLETLLKGMIIQSGNDS 127 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVA+AE + E F +MN ++ LG++ + F NA G+ + YTTA D+ +L+ I Sbjct: 128 AVALAEHIAGDESTFTTYMNKYARKLGMNNSQFRNASGLPDNNQYTTAADIVLLATAIIK 187 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFPQ+ ++ K G K N N + DG+KTGFT +G+N+VASA + L Sbjct: 188 DFPQFYLWYSEKEFTYHGIKQYNRNKLLWNDHTVDGLKTGFTKKAGYNLVASAKRLGMRL 247 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 I+V+LG+ N R + +L GF + K I I K+ N + + + Sbjct: 248 ISVVLGSSSVNDRTSQTQKILDYGFR-FFETKTIRNIKKELPIANSTKNMLKV 299 >gi|227329429|ref|ZP_03833453.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 401 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 143/278 (51%), Gaps = 12/278 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +L + PF + +P Y L+D ++G V+AE+ D +PASLTK+M + Sbjct: 15 VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YV+ +K K T +T+ K+A S K G + + K ++++S Sbjct: 75 YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++A+A+ + ++ FV MNN +K L L+ T+F+ HG+ G Y+TARDMA+L Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFLTVHGLDAPGQYSTARDMALLGQA 194 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K + PN N + T L DG+KTG T +G N+VASA +G Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + LI+V+LGA R + S LL+ GF I Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLTWGFRFFETVTPI 292 >gi|119775724|ref|YP_928464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis SB2B] gi|119768224|gb|ABM00795.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella amazonensis SB2B] Length = 392 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 163/351 (46%), Gaps = 17/351 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + L++ M+ + P + A + Y L+D +TG +IAE + NPASLTK+ Sbjct: 11 KSMLLLAIMSASAFAAPPTVVPDAPSVAAKAYVLMDYHTGQIIAEEHAYEQLNPASLTKM 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSA 116 MT+YV+ +K +TI+KNA S + G T+ + + +I++S Sbjct: 71 MTSYVIGHEMKVGNISPEDDVTITKNAWSKNFPDSSKMFIEVGKTVKAADLNRGIIIQSG 130 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VA+AE + TE FV MN+ +K LG++ ++F N+HG+ H TTA DMAIL Sbjct: 131 NDACVAMAEHIAGTEDAFVDMMNSWAKQLGMTDSYFENSHGLDSDNHKTTAYDMAILGAA 190 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K G K N N + + DG+KTG T +G+N+VASA Q Sbjct: 191 LIRDVPEEYRIYSEKEFTFNGIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVASATQD 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR-----------KKINYIIKDFYQQN 284 D LI+V++GA +R S LLS GF ++I Y ++ Sbjct: 251 DMRLISVVMGASSEASRKAESKKLLSYGFRFFETVTPYKAGDSFVNQQIWYGDRESVDLG 310 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + + T+ EA + + L I + Sbjct: 311 VATDTPLTIRRGKGKELQANFELTKPLEAPLAKGEVVGRVYFQLDGKDIAQ 361 >gi|167040194|ref|YP_001663179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|256752060|ref|ZP_05492928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|300914278|ref|ZP_07131594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724486|ref|YP_003904237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|166854434|gb|ABY92843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|256749070|gb|EEU62106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|300889213|gb|EFK84359.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581547|gb|ADN54946.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] Length = 381 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 165/351 (47%), Gaps = 18/351 (5%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ +L S + A+T K L++TNTG ++ E P PAS+T Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIETNTGQILYEKDSHKPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + G DG+KTG T + + + A+A +G Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + L + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAVSVV 301 Query: 294 ----EEVCTTQKEIINYNTQMKEAKDK-----ESHFIDFEKITLLKNKITK 335 E + + E N T+++ + I KIT I K Sbjct: 302 CRDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGKVIKK 352 >gi|330861526|emb|CBX71735.1| D-alanyl-D-alanine carboxypeptidase dacC [Yersinia enterocolitica W22703] Length = 428 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 144/295 (48%), Gaps = 11/295 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ + +L+ + + A Y L+D N+G V+AE D +PASLT Sbjct: 41 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 100 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + L + K + Sbjct: 101 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 160 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA Sbjct: 161 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 220 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +L + D P + K + N N + T L DGMKTGFT +G N+VA Sbjct: 221 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 280 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 281 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPI-KATKPFVAQKV 334 >gi|192293106|ref|YP_001993711.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192286855|gb|ACF03236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 483 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 177/320 (55%), Gaps = 6/320 (1%) Query: 3 QFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FL I+ A+LS + P ++ AE L++ +TG V+ + +PW+PAS+TKLMT Sbjct: 13 SFLTIVVAALLSLTVLPRVANAEAL-----LLIEADTGKVLQADNATYPWHPASVTKLMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV Sbjct: 68 LYVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D Sbjct: 128 VLAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDL 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIA Sbjct: 188 PEYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R +A LL GF T + ++ P++ +E+C ++ Sbjct: 248 VVLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKR 307 Query: 302 EIINYNTQMKEAKDKESHFI 321 + + A + + Sbjct: 308 KRPASDEDETVANALSGNPV 327 >gi|325915034|ref|ZP_08177363.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937] gi|325538732|gb|EGD10399.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937] Length = 401 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 156/323 (48%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKNSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDTSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ AK+ Sbjct: 290 FRFFETHGLYAPGKVVTKQKVWKGAQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVAKNLE 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKKGQQVGTVKVSLDGKIIAQ 372 >gi|165924684|ref|ZP_02220516.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166009807|ref|ZP_02230705.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211384|ref|ZP_02237419.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|167419833|ref|ZP_02311586.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424129|ref|ZP_02315882.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270487038|ref|ZP_06204112.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294503318|ref|YP_003567380.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003] gi|165923744|gb|EDR40876.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991203|gb|EDR43504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|166207155|gb|EDR51635.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|166962574|gb|EDR58595.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056978|gb|EDR66741.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361357|gb|ACY58078.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D106004] gi|262365105|gb|ACY61662.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D182038] gi|270335542|gb|EFA46319.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294353777|gb|ADE64118.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003] Length = 400 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 33 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 92 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 93 VGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 152 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 153 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 212 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T +G+N+VASA G LI+V+LGA R Sbjct: 213 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFS 272 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 273 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 302 >gi|326791361|ref|YP_004309182.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326542125|gb|ADZ83984.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 396 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 27/324 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 FL++I M TN+ Y L++ ++G ++ E D P PAS+TK Sbjct: 10 FLLLIIMCCSQVFAAATPKKNTNQTLAATARSYILMEESSGKILLERNADEPLPPASITK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT ++ + K +TIS++A+ S + G T+ + +K + + SAND Sbjct: 70 VMTLLLINEAVDTGKINWEDKVTISEHAAHMGGSQVFMEPGEEQTVRDLVKCICIASAND 129 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AVA++E + +E++FV+ MN + LG++ T F NA G+ GH +TARD+A++S + Sbjct: 130 AAVAMSEYIAGSEEQFVELMNKRAAELGMTHTVFKNACGLHTEGHVSTARDIALMSRALV 189 Query: 179 TDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 P+ I + NTN + + G G+KTG+T + + A Sbjct: 190 NGHPEITKTLTTWMDTITHRTRRGESEFGLSNTNKMLKWYKGITGLKTGYTPEAKHCVSA 249 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +A + + LIAVI+GA D TR + + LL GF N Y+ + + Sbjct: 250 TATRDNMGLIAVIMGAADGKTRFQEAGQLLDYGFAN--------------YKVKVGPTIG 295 Query: 291 NISEEVCTTQKEIINYNTQMKEAK 314 I E + ++ N KE K Sbjct: 296 TIIGEAPIKKGDVSKINVATKETK 319 >gi|209551182|ref|YP_002283099.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536938|gb|ACI56873.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 377 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 180/311 (57%), Gaps = 7/311 (2%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 S+ P+ L+D TG V+ W PASLTKLMT Y VF ++ + L T Sbjct: 26 LASVPLAAANPH-ILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDT 84 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 P+ +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV M Sbjct: 85 PVVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAIGGTQEGFVTRM 144 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + Sbjct: 145 NGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTNGQQ 204 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 P+ N +G F GADGMKTGF CASGFN + SA + +++++V+LG R +A+ Sbjct: 205 NVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTIVSVVLGTDSLAARADATAN 264 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 LL GF + + ++ + Q ++V +IS ++C+ + I T+ + + + Sbjct: 265 LLQKGFTTQFPGNETLGSLRPYGQGQ--DQVTDISADICSAKGAKIRSETRDEVGRMRVQ 322 Query: 319 HF----IDFEK 325 +D + Sbjct: 323 SPYILEMDHDP 333 >gi|15966442|ref|NP_386795.1| putative penicillin-binding protein [Sinorhizobium meliloti 1021] gi|307300521|ref|ZP_07580301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307318386|ref|ZP_07597821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15075713|emb|CAC47268.1| Putative penicillin-binding protein [Sinorhizobium meliloti 1021] gi|306896068|gb|EFN26819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306904687|gb|EFN35271.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 360 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 182/308 (59%), Gaps = 4/308 (1%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 +A +F ++ + ++D +T V W PASLTKLMTAY F Sbjct: 1 MLAGACAVFLAAALPASANPR--LVIDVDTLKVYEHQDIFQRWYPASLTKLMTAYTTFRA 58 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 ++ + L +P+ ++KNA+ PPS +K G MTLD+ALK++++KSAND+AVAIAE++ Sbjct: 59 IQAGQLTLQSPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLIKSANDVAVAIAETVG 118 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E+ F++ MN ++ +G++++HF+N +G+ G YTTARD+A+L+ +K +FPQY YF Sbjct: 119 GSEQAFIEKMNAEARRIGMTSSHFINPNGLPGQGQYTTARDLAVLAVTLKREFPQYASYF 178 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 ++G K YPN N +G F GADGMKTGF CASGFN V+SA +G + +++V+LG Sbjct: 179 ALEGFTTGKKDYPNYNMLIGRFDGADGMKTGFICASGFNQVSSASRGGRRVVSVVLGEDS 238 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 R SA LL M F + K I + + V +IS+E+C+ Q + Sbjct: 239 LAARADESARLLQMAFTTVSTGKPSLAEIVPYGETR--GVVADISKEICSKQAAKVRSEG 296 Query: 309 QMKEAKDK 316 + + + K Sbjct: 297 RDEAGRQK 304 >gi|124265504|ref|YP_001019508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] gi|124258279|gb|ABM93273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium petroleiphilum PM1] Length = 384 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 153/286 (53%), Gaps = 13/286 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ V++ A+ + + + A+ + P Y L D T V+A PD P PAS Sbjct: 1 MKRLFVLL-FAVATALTGVAAQAQAVQPPEIAARSYLLFDVTTNQVLAAKDPDSPIEPAS 59 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112 LTKLM+AY+VF LK+KK LT + +S+ A S S S +T+D+ LK I Sbjct: 60 LTKLMSAYLVFQALKDKKLTLTQTLPVSERAWRTGMTGASRSFLPLNSQVTVDDLLKGEI 119 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND V +AE + + ++FV MN ++ GL AT F N G+ GH +TARD+A+ Sbjct: 120 VQSGNDATVVLAEGVGGSLEQFVAMMNRQAQAFGLKATTFKNPEGLPAAGHTSTARDLAV 179 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 ++ R+ DFP+Y+ Y ++ K PN N + DG+KTGFT A+G+ ++ +A Sbjct: 180 IATRLVQDFPEYLRYSVMREFTFNKIKQPNRNLLLYRDPTVDGLKTGFTDAAGYCMITTA 239 Query: 233 IQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + LI+V+LGA +R S LL+ G+ K + Sbjct: 240 KRDFPNGPRRLISVVLGAASMESRANESQKLLNWGYTAFDAVKLFD 285 >gi|186894765|ref|YP_001871877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] gi|186697791|gb|ACC88420.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] Length = 401 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 34 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 93 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 94 VGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 153 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 154 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 213 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T +G+N+VASA G LI+V+LGA R Sbjct: 214 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFS 273 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 274 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 303 >gi|153947077|ref|YP_001401624.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] gi|152958572|gb|ABS46033.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] Length = 400 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 33 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 92 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 93 VGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 152 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 153 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 212 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T +G+N+VASA G LI+V+LGA R Sbjct: 213 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFS 272 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 273 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 302 >gi|163797884|ref|ZP_02191828.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] gi|159176846|gb|EDP61414.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199] Length = 421 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 1/296 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + L I + +L P + AE +LD +TG ++ E +PASLTK+MT Sbjct: 9 RILATIVLGLLWLAAPSMGRAEVTAKYAALVLDADTGTILFERQAAAERHPASLTKIMTL 68 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ K L + +S A+ PS + G ++ +A+ L+ KSAND+AV Sbjct: 69 YMLFDAIEHGKISLNQRLKVSARAAGQAPSKLGLQPGDSIRAKDAILALVTKSANDVAVV 128 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE+L +TE +F + M + ++ LG+ T F NA G+ +TA DMA+L+ I+ DFP Sbjct: 129 VAEALGETEPRFARLMTDRARRLGMRNTTFRNASGLHHPNQISTAYDMAMLALAIRRDFP 188 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + YF + G++Y N N +G + G DG+KTG+ ASGFN+VAS + + LI V Sbjct: 189 KEYAYFSTRSFSWGGREYGNHNKLLGHYEGTDGIKTGYIGASGFNLVASVERNGRRLIGV 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 + G R++ LL+ GF K D ++ +++ EV S E + Sbjct: 249 VFGGRSGPLRDRHMKRLLTSGFE-KADEIRVAHVVPPIPHPRPEREVQLASVETAS 303 >gi|312877868|ref|ZP_07737815.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] gi|311795372|gb|EFR11754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] Length = 386 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 17/350 (4%) Query: 1 MRQ-FLVIIAMAMLSN------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47 MR+ +I ML + + L+D +TG ++ E Sbjct: 1 MRKAITFLIVFLMLFGNSHIACKKVFGESLQTQTPSLEISAKSAILVDFDTGRILYEKNS 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 +PAS+TK+MT ++ +++ + L+ + S+NAS S K+ MT++ Sbjct: 61 HEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGSQVYLKENEEMTVEEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNFVNPYGLDAENHYTSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASG 225 D+AI+S + Y I+ K+ NTN V + G G+KTG T + Sbjct: 181 YDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAK 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 F + ASA++ LIAVI+GA D TR + LL GF N + + F + + Sbjct: 240 FCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFANFSMYSPYSKGYC-FGKVKI 298 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 N + E + T +++ + K + KI K Sbjct: 299 KNGIEKEVEAILCTDVKLLVKKGDESAVESKVALPQQISAPVKAGQKIGK 348 >gi|283785832|ref|YP_003365697.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168] gi|282949286|emb|CBG88897.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168] Length = 390 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 142/312 (45%), Gaps = 27/312 (8%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F + + L+D TG ++ NPASLTKLMT YVV + + Sbjct: 29 FAPQPPAIEAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDD 88 Query: 79 PITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 +T+ ++A S K+G +++ + + LIV S ND VA+A+ + + Sbjct: 89 IVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQP 148 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +FV MNN K L L THF HG+ G +++A D+A+LS I P++ H + K Sbjct: 149 QFVAMMNNYVKKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKS 208 Query: 193 LEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L G N N + L DG+KTG T +GFN++ASA+ G + LIAVI+GA Sbjct: 209 LTWNGITQYNRNGLLWDKSLNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGAQSPKG 268 Query: 252 RNKVSASLLSMGFYNKTDRK-----------KINYIIK---------DFYQQNLSNEVPN 291 R + + LL G N + +I Y K DF+ E+P+ Sbjct: 269 REEQARKLLHWGQQNFDTVQILRNGKQVGTERIWYGDKEKIALGTEQDFWMALPKTEIPH 328 Query: 292 ISEEVCTTQKEI 303 I + K + Sbjct: 329 IKAKYVLDTKAL 340 >gi|270262090|ref|ZP_06190362.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13] gi|270043966|gb|EFA17058.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13] Length = 389 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 139/285 (48%), Gaps = 16/285 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ ++ + +L + + A Y L+D TG V+AEN D Sbjct: 1 MKRSVLSVMTGVLLPLAVQAADAPLSFPLNTPPAIDAASYVLMDYTTGQVLAENNADERR 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 NPASLTKLMT V+ L + K L +T+ K+A S K G +T+ Sbjct: 61 NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + + +I+ S ND VA+A+ + ++ FV+ MN S LGL THF HG+ G +T Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSTQLGLQNTHFETVHGLDAPGQFT 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 TA D+A++S I P H + K L G N N + L DG+KTG T ++ Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQNRNGLLWDKNLRVDGLKTGHTASA 240 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 GFNI+ASA +GD+ LIAV++G R + LL+ G + Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSAKGREDQARKLLTWGLRDFAT 285 >gi|156933395|ref|YP_001437311.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter sakazakii ATCC BAA-894] gi|156531649|gb|ABU76475.1| hypothetical protein ESA_01208 [Cronobacter sakazakii ATCC BAA-894] Length = 390 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 154/337 (45%), Gaps = 17/337 (5%) Query: 5 LVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ ++ ML+ I + A Y L+D TG ++A N NPASLT Sbjct: 8 MIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLL 111 KLMT YVV + + +T+ K+A S K G +T+ + + L Sbjct: 68 KLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGL 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV S ND VA+A+ + + +FV MN+ + LGL THF HG+ G +++A D+A Sbjct: 128 IVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLA 187 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +LS I P + H + K L G N N + L DG+KTG T +GFN++A Sbjct: 188 VLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIA 247 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 S++ G + LIAVI+GA R + LL G + + K ++ + Sbjct: 248 SSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKDE 307 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 ++ T ++ + + A K + +D E++ Sbjct: 308 QVA---VGTDRDFWLTLPKAQLANVKAKYLLDRERLD 341 >gi|238762044|ref|ZP_04623017.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] gi|238699772|gb|EEP92516.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] Length = 397 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 142/295 (48%), Gaps = 11/295 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ + LS + + + Y L+D N+G V+AE D +PASLT Sbjct: 10 LKKLTFSAGLLFLSLPYAHAADSPVPPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + L + K + Sbjct: 70 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN +K LGL+ T+FM HG+ G Y+TA DMA Sbjct: 130 VIQSGNDASIALADYIAGSQDSFVGLMNKYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +L + D P + K + N N + T + DGMKTG+T +G N+VA Sbjct: 190 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWNTNINVDGMKTGYTTGAGHNLVA 249 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 250 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPI-KATKPFVTQKV 303 >gi|51892953|ref|YP_075644.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51856642|dbj|BAD40800.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 403 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 158/329 (48%), Gaps = 21/329 (6%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + P L++ +G VI + NPAS+TK+MT V F +++ K L P+TIS+ A Sbjct: 47 ESPSAILMEPLSGRVIYQKNAHERRNPASVTKIMTLIVAFDAIRDGKVSLKDPVTISEEA 106 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 P + G T +L+ L + V SAND AVA+AE + + FV MN +K LG Sbjct: 107 KRQPGTTIFADVGETFSLEELLLSVAVGSANDAAVAVAEHVAGSVDAFVALMNKKAKELG 166 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--------GK 198 ++ T FMN G+ GHY+TA D+A++S +P+ + I G E+ Sbjct: 167 MNDTQFMNPTGLSAEGHYSTAYDIALMSRHAVLHYPELVKLTAIYGAELNVPWRKNGPKF 226 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + N N + + GADG+KTG+T A+G+ + A+A+Q + +IAV++GA RN A Sbjct: 227 QLWNNNKLLTWYPGADGLKTGWTQAAGYCLAATAVQNNTRMIAVVMGAESAKQRNIEVAR 286 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLS-------NEVPNISEEVCTTQKEIINYNTQMK 311 LL GF N T +I K F ++ VP + V + +++ Sbjct: 287 LLDYGFANYT-AVEIAPADKKFGPVRVARGAVAAIEPVPRAAFGVSVPKGSQDKVKWEVR 345 Query: 312 EAKD-----KESHFIDFEKITLLKNKITK 335 K ++ + TL ++ + Sbjct: 346 LPKQVAAPLEKGQAVGEIVATLDGQEVGR 374 >gi|51595692|ref|YP_069883.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 32953] gi|108812820|ref|YP_648587.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|145599648|ref|YP_001163724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F] gi|162419917|ref|YP_001606057.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165936271|ref|ZP_02224840.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|167468020|ref|ZP_02332724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1] gi|170024965|ref|YP_001721470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|229841277|ref|ZP_04461436.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843380|ref|ZP_04463526.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229895754|ref|ZP_04510924.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A] gi|229903242|ref|ZP_04518355.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|51588974|emb|CAH20591.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 32953] gi|108776468|gb|ABG18987.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Nepal516] gi|145211344|gb|ABP40751.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F] gi|162352732|gb|ABX86680.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165915885|gb|EDR34493.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|169751499|gb|ACA69017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|229679012|gb|EEO75115.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516] gi|229689727|gb|EEO81788.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697643|gb|EEO87690.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700677|gb|EEO88706.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A] Length = 401 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 34 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 93 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 94 VGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 153 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 154 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 213 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T +G+N+VASA G LI+V+LGA R Sbjct: 214 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFS 273 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 274 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 303 >gi|294627617|ref|ZP_06706199.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597969|gb|EFF42124.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 401 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|91975804|ref|YP_568463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91682260|gb|ABE38562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 492 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 171/309 (55%), Gaps = 5/309 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + IA ++ P L+ AE L++ +TG V+ +PW PAS+TK+MTAYV Sbjct: 16 IAIAATLMLMAAPRLASAEAL-----LLIEADTGKVLQAENATYPWYPASVTKIMTAYVT 70 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 +KE + L + +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE Sbjct: 71 LKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFRPGTQITVDNALKMMMVKSANDMAVVLAE 130 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + F MN T++ LG++ TH++N +G+ G T+ARD+ IL+ + D P+Y Sbjct: 131 GVGGSIDGFSATMNATAQRLGMTQTHYVNPNGLPADGQVTSARDLGILARAMIRDLPEYE 190 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LG Sbjct: 191 YFSHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLG 250 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 A R +A LL GF T + + PN+ EE+C +++ Sbjct: 251 ANSGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDATPPNLREEMCGPKRKRPA 310 Query: 306 YNTQMKEAK 314 + + A Sbjct: 311 SDEDEQVAS 319 >gi|316935787|ref|YP_004110769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315603501|gb|ADU46036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 483 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 177/331 (53%), Gaps = 8/331 (2%) Query: 3 QFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FL I+A A+LS + P + AE L++ +TG V+ + +PW+PASLTKLMT Sbjct: 13 SFLAIVAAALLSLTVLPRAASAEAL-----LLIEADTGKVLQADNATYPWHPASLTKLMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +K+ + + +T+S A+ PS F G+ +T+DNALK+++VKSAND+AV Sbjct: 68 MYVTLQAVKQGRLTQDSLLTVSPIAAAQSPSKMGFGPGTQITVDNALKMMMVKSANDMAV 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + + F MN+T+ LG++ T ++N +G+ T+ARD AIL+ + D Sbjct: 128 VLAEGVGGSVDGFSAMMNDTAARLGMTQTRYVNPNGLPADEQVTSARDQAILARAVIRDL 187 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIA Sbjct: 188 PEYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R +A LL GF T + ++ P++ +E+C ++ Sbjct: 248 VVLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAATPPDLRDEMCGPKR 307 Query: 302 EIINYNTQMKEAKDKESHFI--DFEKITLLK 330 + + A + F+ TL Sbjct: 308 KRPASDEDETVANALSGDAVLSMFQPPTLRP 338 >gi|308187437|ref|YP_003931568.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans C9-1] gi|308057947|gb|ADO10119.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans C9-1] Length = 388 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 154/338 (45%), Gaps = 16/338 (4%) Query: 2 RQFLVIIAMAML------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 R+ L + + ++ PF + L+D TG V+ PD NPAS Sbjct: 4 RRLLFTVTATVFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPAS 63 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTKLMT YVV + +KK +T+ K+A S K G +++ + + Sbjct: 64 LTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSR 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 +I+ S ND VA+A+ + +E FV MN+ + LGL THF HG+ G Y++A D Sbjct: 124 GVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQYSSALD 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA LS I P + + K L G N N + L DG+KTG T +GFNI Sbjct: 184 MAKLSRAIIDGEPDFYAMYSEKTLSWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGFNI 243 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 +AS + G LIAV++G R + + LL G N D ++ + K +N+ Sbjct: 244 IASNVVGKHRLIAVVMGGKSPKGREEQARKLLVWG-QNTFDTVQLFHAGKKIGSENVWYG 302 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 P+ E T +++ + + K + ID + + Sbjct: 303 NPHQVE--VGTAEDVYLSLPRSEVQNVKAKYVIDRKDL 338 >gi|24372747|ref|NP_716789.1| D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1] gi|24346818|gb|AAN54234.1|AE015560_7 D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1] Length = 390 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 160/352 (45%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I ++++ P ++ A T Y L+D +G +IAE NPASLTK Sbjct: 8 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISKNA S + G T+ + + + +I++S Sbjct: 68 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 127 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L Sbjct: 128 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTTAYDMALLGA 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 188 ALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G R S LL+ GF ++I Y K Sbjct: 248 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 307 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 308 GVATDTPITVSRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIAQ 359 >gi|304397386|ref|ZP_07379264.1| Beta-lactamase [Pantoea sp. aB] gi|304355004|gb|EFM19373.1| Beta-lactamase [Pantoea sp. aB] Length = 387 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 156/340 (45%), Gaps = 17/340 (5%) Query: 1 MRQFLVIIAMAML-------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ L+ A L ++ PF + L+D TG V+ PD NP Sbjct: 1 MKRRLLFTVTATLFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YVV + +KK +T+ K+A S K G +++ + Sbjct: 61 ASLTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWGAGNPVFKGSSLMFLKPGDKLSVRDL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + +I+ S ND VA+A+ + +E FV MN+ + LGL THF HG+ G +++A Sbjct: 121 SRGVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQFSSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMA LS I P + + K L G N N + L DG+KTG T +GF Sbjct: 181 LDMAKLSRAIIDGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGF 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 NI+AS + G LIAV++G R + + LL G N D ++ + K +N+ Sbjct: 241 NIIASNVVGKHRLIAVVMGGKSSKGREEQARKLLVWG-QNTFDTVQLFHAGKKIGTENVW 299 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 P+ + T +++ + + K + I+ + + Sbjct: 300 YGNPHQVD--VGTAEDVYLSLPRSEVQNVKAKYVINRKDL 337 >gi|138895883|ref|YP_001126336.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196248772|ref|ZP_03147472.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|134267396|gb|ABO67591.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196211648|gb|EDY06407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 391 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L++ +TG V+ E P PAS+TK+MT ++ + E K + S+ Sbjct: 36 ADEAKSAILIERDTGKVLYEKNPHEKLPPASMTKIMTMLLIMEAIDEGKLSYDEKVRTSE 95 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRAIAIGSANDASVAMAERIAGSEEAFVEMMNEKAKE 155 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL T F N G+ GHY++A DMAI++ + + Y ++ K Sbjct: 156 LGLKETKFANTTGLPAEGHYSSAYDMAIMARELLK-YEGITKYTSKYEDYLRENTDKKFW 214 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT +G+ + A+A + +IAV+ GA +RN + Sbjct: 215 LVNTNRLVKFYPGVDGLKTGFTSEAGYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274 Query: 260 LSMGFYNKT----DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F++ ++ D + + SE V K+ + K K Sbjct: 275 LDYAFHHYQAHPVYKRNETVARVDVSKGKQKSVAAVTSEPVSVLTKKGQSVEQIEKVVKV 334 Query: 316 KESHFIDFEKITLLKNKITKK 336 K+ K L I K+ Sbjct: 335 KDGVKAPVRKGDELGVLILKQ 355 >gi|21241435|ref|NP_641017.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str. 306] gi|21106773|gb|AAM35553.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str. 306] Length = 401 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|78046281|ref|YP_362456.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289667540|ref|ZP_06488615.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. musacearum NCPPB4381] gi|78034711|emb|CAJ22356.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 401 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|312135356|ref|YP_004002694.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor owensensis OL] gi|311775407|gb|ADQ04894.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor owensensis OL] Length = 384 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 4/313 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+ Sbjct: 36 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVIASQ 95 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K Sbjct: 96 NASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYIMNKKAKE 155 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202 LG+ T+F+N +G+ HYT+A D+AI+S + Y I+ K+ N Sbjct: 156 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKI-IRKYLTTWVDTIREGKFGLTN 214 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL Sbjct: 215 TNKLVRFYKGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDAVKLLDW 274 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 GF N + + F + + N + E + +T +++ + K + Sbjct: 275 GFANFSMYSPYSKGFC-FGKVKVRNGIEKEVEVILSTDIKLLVKKGDESTVESKVTLPQQ 333 Query: 323 FEKITLLKNKITK 335 KI + Sbjct: 334 ISAPVKTGQKIGR 346 >gi|239827603|ref|YP_002950227.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239807896|gb|ACS24961.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 393 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 23/358 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYP 47 M++ + + + I P + I N L++ +TG V+ E Sbjct: 1 MKKLFIRLFLFASIFILPISANIHAEENKTNTRGIQLANDAKSAILIERDTGTVLYEKNA 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 PAS+TK+MT ++ + + + + S+ A+ S + G MT+D Sbjct: 61 HKKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F N+ G+ GHY++A Sbjct: 121 LRGIAIGSGNDASVAMAERIAGSEEAFVEMMNKKAKELGLKNTSFQNSTGLPAEGHYSSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 DMA+++ + + Y I + K NTN V + G DG+KTGFT Sbjct: 181 YDMAMMARELLK-YEDITKYTGIYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTN 239 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD--RKKINYIIK-- 278 + + + A+A + +IAV+ GA RN +L F K N II Sbjct: 240 EAKYCLTATAKKNGMRVIAVVFGASTPKDRNAQITKMLDYAFSQYKTHPVYKRNEIIAHV 299 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + SE + K+ + + K + KE+ +K L I K+ Sbjct: 300 NVSKGKKKAIALVTSEPISVLTKKGQSIDQIEKVIQTKENVKAPIKKGDELGVLILKQ 357 >gi|114046558|ref|YP_737108.1| penicillin-binding protein 6 [Shewanella sp. MR-7] gi|113888000|gb|ABI42051.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-7] Length = 391 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I ++++ P ++ A T Y L+D +G +IAE NPASLTK Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISKNA S + G T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDAENHKSTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G R S LL+ GF ++I Y K Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIAQ 360 >gi|113969331|ref|YP_733124.1| penicillin-binding protein 6 [Shewanella sp. MR-4] gi|117919440|ref|YP_868632.1| penicillin-binding protein 6 [Shewanella sp. ANA-3] gi|113884015|gb|ABI38067.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. MR-4] gi|117611772|gb|ABK47226.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. ANA-3] Length = 391 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I ++++ P ++ A T Y L+D +G +IAE NPASLTK Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISKNA S + G T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKSTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 LI+V++G R S LL+ GF ++I Y K Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIAQ 360 >gi|167628449|ref|YP_001678948.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] gi|167591189|gb|ABZ82937.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] Length = 386 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 13/280 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ + + L+++ P + A + L+D TG ++ E P Sbjct: 1 MKRSTFRLSLAMVFFFLASLIPVQAWAAPPLETQADSAVLMDPTTGAILFEKNSHKRVAP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TKLMT V F +++ KA L + S+ A E S + G M + + L + V Sbjct: 61 ASVTKLMTLLVAFEAIEQGKASLDDKVVTSQRAFEMGGSQIYLEPGEEMVMRDLLISIAV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND VA+AE + + + +V MN +++LGL THFMN HG+ HYT+A DMA++ Sbjct: 121 HSANDACVAVAEHISGSYEAYVDDMNKKAQSLGLKDTHFMNPHGLPVDNHYTSAHDMAVI 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + P M + IK +I+ + N N + + G DG KTG+T + + + Sbjct: 181 AREALK-HPTLMQFVAIKHHKIRESSSKPMQLDNHNRLLWWYPGTDGFKTGWTSEAKYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 V++ + + LIA + G + K S L + GF T Sbjct: 240 VSTVERDNLRLIASVFGVPEIRGHFKESMKLYNYGFSRYT 279 >gi|21232885|ref|NP_638802.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767044|ref|YP_241806.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. 8004] gi|188990136|ref|YP_001902146.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas campestris pv. campestris str. B100] gi|21114716|gb|AAM42726.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572376|gb|AAY47786.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris str. 8004] gi|167731896|emb|CAP50080.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas campestris pv. campestris] Length = 403 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 52 KSWILMDYATGQVLAGENIHQELAPASITKVMTSYVVAAEIKNGKISRDDQVMMSERAWR 111 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 112 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 171 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K N Sbjct: 172 KIGMKNSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNR 231 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+ G Sbjct: 232 NLLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDTSERQRADDSLALLNWG 291 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ AK+ Sbjct: 292 FRFFETHSLYAPGKVVTKQKVWKGEQDEVQLGVAQPLLVSLQRGRYKDLKPSMEVAKNLQ 351 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 352 APIKKGQQVGTVKVSLEGKVIAQ 374 >gi|212636662|ref|YP_002313187.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3] gi|212558146|gb|ACJ30600.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3] Length = 421 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 158/348 (45%), Gaps = 16/348 (4%) Query: 4 FLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L A + P ++ A T Y LLD NTG +IAEN NPASLTK+MT+ Sbjct: 43 LLATSVAAFSAQAAPVVTPNAPTVAAKAYVLLDYNTGQIIAENNAYESLNPASLTKMMTS 102 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ +K + +TISKNA S + G T++++ K +I++S ND Sbjct: 103 YVIGHEIKVGNVSPSDEVTISKNAWSKNFPDSSKMFIEVGKTVSVEELNKGIIIQSGNDA 162 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMAIL I Sbjct: 163 CVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKTTAYDMAILGAAIIR 222 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ ++ K G K N N + L DG+KTG T +G+N+V SA + Sbjct: 223 DVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATKDGMR 282 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQNLSN 287 LI+V++G R S LL+ GF +KI Y ++ ++ Sbjct: 283 LISVVMGTKSETARKAESKKLLNYGFRFFETVTPYQAGDSFVTQKIWYGDRETIDLGVTT 342 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 + P + T+ +A + + L I + Sbjct: 343 DTPITISRGQAKNLQANFELTKELKAPIAKGETVGRIYFQLNGKDIAQ 390 >gi|308186205|ref|YP_003930336.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1] gi|308056715|gb|ADO08887.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1] Length = 400 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 24/354 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L++ +++ + P A + L+D +G V+ E+ D +PASLTK+MT+ Sbjct: 17 SLLILAPISVFAEQAP---AAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTKMMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSA 116 YVV +K K +T+ ++A S K G + + K ++++S Sbjct: 74 YVVGQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSG 133 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA+++ Sbjct: 134 NDACIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMALIAQA 193 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K + N N + T L DG+KTG T +G N+VASA +G Sbjct: 194 LIRDVPEEYALNKEKEFTFNKIRQINRNRLLWSTNLKVDGVKTGHTSGAGNNLVASATEG 253 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL---------- 285 D LI+V+LG R + S LL+ GF I F QQ + Sbjct: 254 DMRLISVVLGTASDAIRFRESEKLLTWGFRFFETVTPI-KADAPFAQQRVWFGDKSQVNL 312 Query: 286 ---SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + I + K N EA K++ + L I ++ Sbjct: 313 GVAKDAALTIPKGQMKNLKASFKLNAPQLEAPLKKNQVVGTIDFQLDGKTIEQR 366 >gi|92119190|ref|YP_578919.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91802084|gb|ABE64459.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 455 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 109/300 (36%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++A ++ I P + T + L++ +TG V+ +PW PASLTK+MTAYV Sbjct: 23 IVLAAGLIVAIAPLRAAHATE---AHLLIEADTGKVLEAENATYPWYPASLTKMMTAYVT 79 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + +K+ + L T T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE Sbjct: 80 LTAVKQGRITLDTLFTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMLVKSANDMAVVLAE 139 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + F MN T++ LG++ T ++N +G+ G T+ARD+ IL+ I D P+Y Sbjct: 140 GVGGSIDGFSAEMNATAQRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIHDLPEYE 199 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ +I + + N N +G F GADG KTGF CASG+N+V SA Q + LIAV+LG Sbjct: 200 YFMRIPSIRYGRRVTRNFNKLIGRFPGADGFKTGFICASGYNLVGSATQNGKRLIAVVLG 259 Query: 246 ALDRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 A R A +L GF N T R + + K ++ PN+ +E+C +++ Sbjct: 260 ASSGTMRAVRVAQMLERGFANNTLSWLRPALGTVDK---LAPIAAAPPNLRDEMCGPKRK 316 >gi|289578311|ref|YP_003476938.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|289528024|gb|ADD02376.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] Length = 381 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 13/322 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ +++ F + A + K L++ NTG ++ E P PAS+T Sbjct: 3 KKILTLLVSVIIAISFILDATAYADTLNLKAKSAILMEANTGQILYEKDSHKPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K ++ + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKISDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + G DG+KTG T + + + A+A + Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRA 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + L + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSGV 301 Query: 294 ----EEVCTTQKEIINYNTQMK 311 E + + E N T+++ Sbjct: 302 CHDDEYILIKKGEGKNIKTEVE 323 >gi|221134237|ref|ZP_03560542.1| D-alanyl-D-alanine carboxypeptidase [Glaciecola sp. HTCC2999] Length = 385 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 143/276 (51%), Gaps = 7/276 (2%) Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ L++ I + ++ + A + Y LLD NTG VIAE D PASLT Sbjct: 1 MQKLLIVWSFICFSFVAQAVVIIPPAPSVAAKGYILLDANTGDVIAEQNADMQLAPASLT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT YV+ L+ LT + IS+NA S + G+ +++ + + ++V+ Sbjct: 61 KIMTMYVIGQELQAGNIALTDEVIISENAWAKNFPDSSKMFIEVGTRVSVSDLMHGIVVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E+ F MN + LG++AT+F+NAHG+ H+T+ RDMA+LS Sbjct: 121 SGNDACVAMAEHIAGSEEAFASMMNAHAAKLGMTATNFVNAHGLHDSQHFTSPRDMAVLS 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P+ + K + N N + L DG+KTG T +G++++ SA Sbjct: 181 RALIKDNPEEYELYSKKEFTYNNIRQYNRNSLLWDKALSVDGIKTGHTSDAGYSLITSAT 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 QGD L++V++G R + LL GF Sbjct: 241 QGDMRLVSVVMGTDSERARKVENKKLLRYGFRFFES 276 >gi|332162265|ref|YP_004298842.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606331|emb|CBY27829.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica Y11] gi|325666495|gb|ADZ43139.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 396 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 144/295 (48%), Gaps = 11/295 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ + +L+ + + A Y L+D N+G V+AE D +PASLT Sbjct: 9 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + L + K + Sbjct: 69 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 128 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA Sbjct: 129 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 188 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +L + D P + K + N N + T L DGMKTGFT +G N+VA Sbjct: 189 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 248 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 249 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPI-KATKPFVAQKV 302 >gi|307265140|ref|ZP_07546699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919762|gb|EFN49977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 381 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 13/322 (4%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ +L S + A+T K L++ NTG ++ E +P PAS+T Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIEANTGQILYEKDSHNPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + GADG+KTG T + + + A+A +G Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAVSVV 301 Query: 294 ----EEVCTTQKEIINYNTQMK 311 E + + E N T+++ Sbjct: 302 CRDDEYILIKKGEGKNIKTEVE 323 >gi|254511152|ref|ZP_05123219.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium KLH11] gi|221534863|gb|EEE37851.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium KLH11] Length = 448 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 106/290 (36%), Positives = 151/290 (52%), Gaps = 4/290 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L +IA L P +A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 3 LFLIAFLWLLVFAPLKGLA---APYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 59 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L TP+ I+K AS PPS + G T+ ++ VKSAND A AI Sbjct: 60 AFEAVRNGEITLDTPVRITKKASSEPPSKLGLRTGQTIQFRYLIRAAAVKSANDAATAIG 119 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 ++ +E F + M T+K +G+S T F NAHG+ + GH +TARDM L + D+PQY Sbjct: 120 IAISGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTETGHLSTARDMTTLGRHLLYDYPQY 179 Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + K PNTN + + GADG+KTG+T A+GFN+VASA + D+ +IA + Sbjct: 180 YNLFSRQSTHAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRKDERIIATV 239 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 G +RN A LL MGF R I + Y N V ++ Sbjct: 240 FGGKSGASRNARVAELLDMGFRRAPSRAPIRKPARPAYAGNAGLGVTQVA 289 >gi|289663962|ref|ZP_06485543.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 371 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 20 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 79 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 80 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 139 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 140 KIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNR 199 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 200 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 259 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 260 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 319 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 320 APIKQGQQVGTVKVSLDGKVIAQ 342 >gi|254476532|ref|ZP_05089918.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11] gi|214030775|gb|EEB71610.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11] Length = 538 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 102/280 (36%), Positives = 153/280 (54%), Gaps = 5/280 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++ + M+ P + A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 29 LVVFLTMIMAAPPNVGAAPY----AAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 84 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + L T + IS+NA+ PPS K G + ++ +KSAND A AI E Sbjct: 85 FEAVRNGEITLDTKVKISRNAAAEPPSKLGLKAGQRIAFRYLIRAAAIKSANDAATAIGE 144 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F + M T+K LG+S T F NAHG+ ++GH +TARDM L I D+P+Y Sbjct: 145 TLSGSEAAFARRMTRTAKALGMSRTTFKNAHGLTENGHMSTARDMTTLGRHILYDYPEYY 204 Query: 186 HYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + F K + + PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 205 NLFSRKSADAGVRTVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAQRGNERVIATVF 264 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G +RN A LL +GF K+ + YQ N Sbjct: 265 GGKSSTSRNAKVAELLDLGFRRAPSHAKLRRPAQPPYQGN 304 >gi|157962970|ref|YP_001503004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC 700345] gi|157847970|gb|ABV88469.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC 700345] Length = 390 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 6/275 (2%) Query: 1 MRQFLVIIAMAMLSN-IFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L ++A LS P ++ A T Y L+D NTG +IAE NPASLTK Sbjct: 8 LKTLLFATSVAALSAHAAPVVTPNAPTVAAKAYVLMDYNTGQIIAEENAYESLNPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K + +TISK A S + G +T+++ K +I++S Sbjct: 68 MMTSYVIGHEIKVGNVSPSDEVTISKKAWSKNFPDSSKMFIEVGKKVTVEDLNKGIIIQS 127 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMAIL Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKSTAYDMAILGA 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 I D P+ ++ K G K N N + L DG+KTG T +GFN+V SA + Sbjct: 188 AIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGAGFNLVTSATK 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LI+V++G R S LL+ GF Sbjct: 248 DGMRLISVVMGTKSEAARKAESKKLLNYGFRFFET 282 >gi|311280276|ref|YP_003942507.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308749471|gb|ADO49223.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 402 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 95/274 (34%), Positives = 144/274 (52%), Gaps = 15/274 (5%) Query: 15 NIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + P + AE ++P + L+D +G V++E D +PASLTK+MT+YVV Sbjct: 20 FVAPAVQAAEQVQMPAPPPVDAKAWILMDYASGKVLSEGSADEKLDPASLTKIMTSYVVG 79 Query: 67 SFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 LK K LT +TI ++A S K G +++++ K +I++S ND + Sbjct: 80 QALKAGKIKLTDSVTIGRDAWATGNPALRGSSVMFLKPGDQVSVEDLNKGVIIQSGNDAS 139 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AIA+ + ++ FV MN+ ++ LGL+ T F HG+ G ++TARDMA+L+ + D Sbjct: 140 IAIADYVAGSQDSFVGLMNSYAQKLGLTNTTFQTVHGLDAPGQFSTARDMALLTRAMIHD 199 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P + K + PN N + L ADG+KTG T +G+N+V+SAIQGD L Sbjct: 200 VPDEYAIHKEKEFTFNKIRQPNRNRLLWNASLNADGVKTGTTAGAGYNLVSSAIQGDMRL 259 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 IAV+LG R S LL+ GF I Sbjct: 260 IAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPI 293 >gi|88705586|ref|ZP_01103296.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Congregibacter litoralis KT71] gi|88700099|gb|EAQ97208.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Congregibacter litoralis KT71] Length = 372 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 9/305 (2%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M + + Y L+D N+G V+ E+ D PASLTKLMTAYV+ S ++ Sbjct: 1 MAVSAQNIVPAPPEVAARAYLLVDANSGAVLVESNADEQLPPASLTKLMTAYVLASEIEA 60 Query: 72 KKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + +T+S+NA P S + +T+ + +++ S ND VA+AE Sbjct: 61 GRVSRDDQVTVSRNAWSQNPVFNGSSLMWIEPRKPVTIGQLEQGVVISSGNDATVAVAEH 120 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + +E F MN + LGL T+F N+HG+ H TTARD+A L+ I FP++ Sbjct: 121 IAGSEAAFADLMNKHAAELGLHGTYFANSHGLPHPQHLTTARDLATLAKNIIARFPEHYK 180 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + K N N +G DG+KTG+T +G+ +VASA + LI+V++G Sbjct: 181 VYSQRDYTYNDIKQYNRNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGT 240 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPN-ISEEVCTTQKE 302 R + + SLL+ GF + + K + +++ V I+++V T Sbjct: 241 ESTRARARETRSLLNYGFRFYETDVMVAGAEELEKPRVWKGVADYVSVGIADDVVMTLPR 300 Query: 303 IINYN 307 N Sbjct: 301 GKRNN 305 >gi|89056340|ref|YP_511791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] gi|88865889|gb|ABD56766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] Length = 468 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 150/266 (56%), Gaps = 2/266 (0%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A+ + +F ++ A+ N PY ++D G V+ D +PASLTK+MT Y+ Sbjct: 6 LFVALLGVQILFGAVAPAQVNAAPYAAMVMDARNGEVLHSRNADTRLHPASLTKMMTLYI 65 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T +T+S NA+ PPS G+T+ L L+ ++S ND A AI Sbjct: 66 AFEAIRLGEITLDTEVTVSANAAAEPPSRLGLSAGTTIRLRYLLRAAAIRSGNDAATAIG 125 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +E F + M T++ LG++ T F NAHG+ + GH +TARDM +L R+ D+PQY Sbjct: 126 EAISGSEAAFARRMTRTARALGMTRTTFRNAHGLTEDGHLSTARDMTMLGRRLVYDYPQY 185 Query: 185 MHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + NTN + T+ GADG+KTG+T A+GFN+VASA +G++ +IA + Sbjct: 186 YNLFSRVTADAGIATIRNTNRVVLTTYRGADGIKTGYTRAAGFNLVASAQRGEERIIATV 245 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTD 269 G RN+ LL MGF Sbjct: 246 FGGRSSAWRNQRVMELLDMGFERAPS 271 >gi|322513157|ref|ZP_08066289.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC 25976] gi|322121089|gb|EFX92912.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC 25976] Length = 392 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 147/288 (51%), Gaps = 16/288 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHP 50 M++ + ++ + + F ++A+ N Y L+D N+G+V+A PD Sbjct: 1 MKK-TLFKSVGLCALAFSQFAVADANVDFGISAPQLNAQSYILMDYNSGNVLASLNPDQR 59 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 PASLTK+MT+YVV LK+ K + +T+++N+ S + +++++ Sbjct: 60 QYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVEDL 119 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ LI+ S ND AVA+AE +++ F+ MN ++ GL THF HG+ + Y++A Sbjct: 120 MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFAQQFGLKNTHFTTVHGLDEPNQYSSA 179 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 RDMAI+ I D P+ + K + K PN N + + DGMKTG T +G Sbjct: 180 RDMAIIGAHIIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTSQAG 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +N+VASA + LI+V++G R S LL GF N K + Sbjct: 240 YNLVASATNSNTRLISVVMGVGTYKGREVESKKLLQWGFANFETIKSL 287 >gi|313114949|ref|ZP_07800445.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622742|gb|EFQ06201.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf. prausnitzii KLE1255] Length = 368 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 4/253 (1%) Query: 20 LSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 + +LP L+D TG ++ E D AS+TK+MT + F + + + + Sbjct: 7 AAAQPALELPCRAACLIDQQTGTILYEKNADQQMPIASITKVMTLLLTFEAVHDGRIAMD 66 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T + +S++A S + G TLD +K + V SAND AVA+AE + +E FVQ Sbjct: 67 TLVPVSEHAYHMGGSQIWLEPGEQFTLDEMIKAICVSSANDAAVAVAELVGGSEPGFVQM 126 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN + LG+ T F NA G+ GH +TA D+AI+S I P+ +HY I ++G Sbjct: 127 MNARAAELGMVNTTFHNACGLDTEGHLSTAHDVAIMSREILNTCPEVLHYTGIWTDTLRG 186 Query: 198 --KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + NTN + + G G+KTG T +G I ASA + LIAV+LG+L + R Sbjct: 187 GATQLVNTNKLLKRYNGITGLKTGTTSGAGVCISASATRDGLDLIAVVLGSLSSSERFTA 246 Query: 256 SASLLSMGFYNKT 268 + +LL GF Sbjct: 247 ATTLLDYGFAAYA 259 >gi|54310018|ref|YP_131038.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46914457|emb|CAG21236.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 391 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ F IIA A++ +I A Y L+D N+G +IAEN D Sbjct: 1 MKKSAATFQTIIASALMLTSASAAAIPTVVPEAPQIAAKAYILMDYNSGKIIAENNSDEK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 +PASLTK++T+YV+ +K L +++S NA S + G +T+ Sbjct: 61 LHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKNFPGSSKMFLEPGKLVTVQEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 K +I++S ND A+AE + + FV+ MN +K +G+ ++HF+N HG+ H++TA Sbjct: 121 NKGIIIQSGNDACTAMAEHIAGSTGSFVELMNAWAKRIGMESSHFVNVHGLDNDDHFSTA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMA L+ + D P ++ K G N N + L DGMKTG T +G+ Sbjct: 181 HDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLLWDKSLNVDGMKTGHTDQAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ++VASA +G LI+V++G N R S LL+ GF Sbjct: 241 SLVASAYEGKMRLISVVMGTKSANARKAESKKLLNYGFRFFET 283 >gi|218675296|ref|ZP_03524965.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56] Length = 370 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 183/310 (59%), Gaps = 9/310 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +S+++ N + L+D TG V+ W PASLTKLMT Y VF ++ + L TP Sbjct: 22 VSLSQANP---HILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTP 78 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 I +SK A+ P + FK G +TLD+ALK+L+VKSAND++VA+AE++ T++ FV MN Sbjct: 79 IVMSKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSANDVSVAVAEAIGGTQEGFVTRMN 138 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + Sbjct: 139 GEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTTGQQN 198 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG R +A+L Sbjct: 199 VPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANL 258 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319 L GF + +K + Q ++V +I+ ++C+ + I T+ + + K S Sbjct: 259 LQKGFTTQFPGNDTLGSLKAYEQGQ--DQVTDITADICSAKGAKIRSETRDEVGRMKVSS 316 Query: 320 F----IDFEK 325 +D + Sbjct: 317 PYILEMDHDP 326 >gi|313901874|ref|ZP_07835294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467867|gb|EFR63361.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 437 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 155/323 (47%), Gaps = 21/323 (6%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 FP S A ++D +G ++ E D P +PAS++KLMT + + + L Sbjct: 80 FPARSAAL-------LVMDPASGQILWEKNGDEPRHPASISKLMTLLLTLEAIDAGQIRL 132 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +T+S A P S + + G +T+++ +K + V SAND VA+AE + +FVQ Sbjct: 133 QDQVTVSPRAQGTPGSTAFLEAGERITVEDLIKAVAVASANDACVALAEYISGDVDRFVQ 192 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN + LGL+ T F++ HG+ G+ +ARD+A+LS + P+ +HY I + Sbjct: 193 RMNQRAAELGLTRTRFVDPHGLTDQPGNRMSARDVALLSRYLINHHPEILHYTSIWEDWL 252 Query: 196 KGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + NTN V + G DG+KTG T SG ++V +A +GD I V+LGA D N Sbjct: 253 RKGTDREFWLTNTNKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGAPDSN 312 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN----EVPNISEE---VCTTQKEI 303 TR + ++ LL F + D + + ++ +VP EE V + E Sbjct: 313 TRWREASRLLDWAFASF-DSVPVARPGQPLRAVRVAEGRRLQVPVTVEEVFGVTVPRGEG 371 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 ++ + + +++ Sbjct: 372 GRVRWDLEVTEPVPAPVAPGQRV 394 >gi|317047293|ref|YP_004114941.1| beta-lactamase [Pantoea sp. At-9b] gi|316948910|gb|ADU68385.1| Beta-lactamase [Pantoea sp. At-9b] Length = 428 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 67 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVG 126 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 127 KDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNL 186 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN + LGL THF HG+ G Y++ARDMA++ + D P + K Sbjct: 187 MNNYVQALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPDEYAVYHEKEFTFNN 246 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA +G LI+ ++G R S Sbjct: 247 IRQLNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVMGGHTYKGRETES 306 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 307 KKLLTWGFRFFETVAPLKAG-KEFASEPV 334 >gi|317405763|gb|EFV86054.1| penicillin-binding protein [Achromobacter xylosoxidans C54] Length = 385 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 142/281 (50%), Gaps = 9/281 (3%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +++A A +S + LLD +G VIA + PASLTK Sbjct: 3 MKKLAASLLVATACMSGALAQSMPQPDLSAKAWLLLDETSGQVIASHAATARIEPASLTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116 +MTAYVVF + K+ + IS A + PP S + GS +++D L+ L+++S Sbjct: 63 IMTAYVVFGAIHNKELSPDQKVVISTRAWKVPPGSSKMFLEPGSRVSVDQLLRGLMIQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+AE++ + + FV MN+T+ LGL THF + HG+ G Y+T D++IL+ R Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAVQLGLHGTHFASPHGLPDPGTYSTVSDLSILATR 182 Query: 177 IKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 D+PQ + K PN N + DG+KTG T A+G+ IVA+A + Sbjct: 183 FIRDYPQLYKTYDSAKTYTYNNITQPNRNRLLWLDPSVDGLKTGHTDAAGYCIVATAHRP 242 Query: 236 D----QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + + LI V++G R + S LL GF K Sbjct: 243 NGKEQRRLITVVVGTASDKLRTQESRELLEWGFQGFNTIKL 283 >gi|37525520|ref|NP_928864.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (DD-pept (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784948|emb|CAE13866.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (DD-pept (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 400 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 143/285 (50%), Gaps = 12/285 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 M V+ + + S + + ++ +P Y L+D ++G ++A PD +PAS Sbjct: 7 MAIKCVVAVLTVASMVSARVYASDEPVVPPVDARAYVLMDYDSGKILAAGNPDERLDPAS 66 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALK 109 LTK+MT+YVV +K K +T+ K+A S K G + + + Sbjct: 67 LTKIMTSYVVGQAIKAGKITPEDIVTVGKDAWATGNPILKGSSLMFLKPGDRVKVIDLNH 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 ++V+S ND ++A+A+ + ++ FV MNN +K LGL+ THF HG+ G ++TARD Sbjct: 127 GVVVQSGNDASIALADYVAGSQDVFVSLMNNYAKALGLTNTHFRTVHGLDAEGQFSTARD 186 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNI 228 MA+LS + D P + K + PN N + + DG+KTG+T +G+N+ Sbjct: 187 MAVLSQAMIRDVPDEYALHKEKTFTFNKIQQPNRNRLLWNKNMNVDGVKTGYTSGAGYNL 246 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 VASA +G LI+V+LGA R S LL+ G I Sbjct: 247 VASATEGPMRLISVVLGAPSDRIRFVESEKLLAWGLRFYETVTPI 291 >gi|157692847|ref|YP_001487309.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157681605|gb|ABV62749.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 400 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 94/358 (26%), Positives = 163/358 (45%), Gaps = 24/358 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------------TNKLPYYTLLDTNTGHVIAENYP 47 R + + +L ++ +IA+ ++ L++ +TG V+ Sbjct: 8 RHICALFTLMILISMVSPSAIAKEKIEKPEEKQTSELAHEAKSAILIERDTGKVLYNKNS 67 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D PAS+TK+MT ++ + + K +T + S +A+ S + G MT+ Sbjct: 68 DEKLAPASMTKIMTMLLIMEAIDQGKLKMTDKVRTSDHAASMGGSQIFLEPGEEMTVKEM 127 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + S ND +VA+AE + +E++FV+ MN +K LGL++T F N G+ + HY+TA Sbjct: 128 LKGIAIASGNDASVAMAEHIAGSEEQFVEQMNKKAKELGLTSTVFQNPTGLPEKDHYSTA 187 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 DMA ++ + + Q + + K NTN + + G DG+KTGFT Sbjct: 188 HDMAKMAKELLK-YEQITKFTGVYEDYLRQNTDKKFWLVNTNRLIKFYPGVDGLKTGFTG 246 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKD 279 + + + ASA +G+ +IAV+ GA RN +L F T K+ + + Sbjct: 247 EAKYCLTASAKKGNMRVIAVVFGASTPKDRNAQVVKMLDYAFSQYTTHPLYKRGQDVAEI 306 Query: 280 FYQQNLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + ++ + SE + K+ N + KE K + F K T L + KK Sbjct: 307 KVSKGTKKKIQLVTSEPISLLTKKGENVDQIKKEIKLSQDVTAPFSKGTELGTIVLKK 364 >gi|261405987|ref|YP_003242228.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] gi|261282450|gb|ACX64421.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] Length = 396 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 87/289 (30%), Positives = 139/289 (48%), Gaps = 22/289 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAE 44 M++ L+ + +A+ + S AE N P LLD +TG +I E Sbjct: 1 MKKALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYE 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 PAS+TK+MT + + E + T + S+ A+ S + G MT+ Sbjct: 61 KNSHDKLPPASITKVMTMLLTMEAIDEGQLKWTDKVRTSEYAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF+N +G+ HY Sbjct: 121 DEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 T+A D+A++S + + Q Y ++ K NTN V + GADG+KTG Sbjct: 181 TSAHDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +T + F + A+A + +AV++GA D TRN + + F T Sbjct: 240 YTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYT 288 >gi|261343559|ref|ZP_05971204.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] gi|282568708|gb|EFB74243.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii DSM 4541] Length = 403 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 159/354 (44%), Gaps = 21/354 (5%) Query: 4 FLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + A FP SI A T Y L+D N+G V+AE+ D +PASLTK+MT Sbjct: 20 LISTVNFANADEAFPNTSIPAAPTIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMT 79 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKS 115 +YV+ +K K +T+ ++A S K G +++ + + ++S Sbjct: 80 SYVIGQAIKSGKIGANDMVTVGEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQS 139 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+A+ + + FV MNN LGL THF HG+ G Y++ARDMA++ Sbjct: 140 GNDACVAMADHVAGDQSSFVNLMNNYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALIGQ 199 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ ++ K + N N + L DG+KTG T A+G+N+VASA Sbjct: 200 ALIRDVPEEYEIYKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLVASAKD 259 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290 GD LI+V++G R+ S LL+ GF K + ++ + + S Sbjct: 260 GDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKPLQAGVEFATTPVWFGDDSEVKL 319 Query: 291 NISEEVCTTQ--------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + +++ T K + EA K+ + L I ++ Sbjct: 320 GVVDDLYLTIPRGRLKDLKASYELTSTEIEAPLKKGQQVGVISFQLDGKTIEQR 373 >gi|325920074|ref|ZP_08182046.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865] gi|325549444|gb|EGD20326.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865] Length = 401 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 156/323 (48%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+ G Sbjct: 230 NLLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDSSERQRADDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ AK+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVAKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ I K++L I + Sbjct: 350 APIKKGQQIGTVKVSLDGKIIAQ 372 >gi|86139111|ref|ZP_01057682.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. MED193] gi|85824342|gb|EAQ44546.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. MED193] Length = 554 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 163/332 (49%), Gaps = 3/332 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++ I +L + + PY ++D TG V+ D +PASLTK+MT Y Sbjct: 23 VLWIMGVVLFLGMALIPPTQAQAAPYAAVVVDARTGEVLHSRNADARLHPASLTKMMTLY 82 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ + L + ISKNA+ PPS K G + ++ VKSAND A AI Sbjct: 83 IAFEAVRNGEISLDQKVRISKNAAAEPPSKLGLKSGQRIAFRYLIRASAVKSANDAATAI 142 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E++ +E F + M T+K LG+S T F NAHG+ + GH +TARDM L I D+P+ Sbjct: 143 GEAISGSEAAFARRMTRTAKALGMSRTTFKNAHGLTEAGHLSTARDMTKLGRHILYDYPE 202 Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y H F ++ K PNTN + ++ GADG+KTG+T A+G N+VASA +GD+ +IA Sbjct: 203 YYHLFSRTSIDAGVKTVPNTNRRLLASYKGADGIKTGYTRAAGSNLVASAKRGDERIIAT 262 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV-PNISEEVCTTQK 301 + G +RN LL +GF R ++ + Y N ++ Sbjct: 263 VFGGKSSTSRNARIVELLDLGFRRAPSRARVRAPGRPAYVGNQGIGGSTQVAAATNGGAG 322 Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + + N +K + + I ++ + Sbjct: 323 KTVRVNGLVKTSLRPLARPIPVVDPDVIAEAV 354 >gi|317128503|ref|YP_004094785.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus DSM 2522] gi|315473451|gb|ADU30054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus DSM 2522] Length = 387 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 15/312 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ +++ + + ++AE + L++ +TG V+ E PA Sbjct: 1 MKKSFIVLLLGLYMFSSAGSALAEESTVDLADDATSAILIERDTGQVLYEKNSGEKLPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT ++ + K + S+ A+ S + G MT++ +K + + Sbjct: 61 SMTKVMTMLLIMEAIDSGKITWDEKVRTSERAASMGGSQIFLEPGEEMTVEEMMKGIAIA 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND +VA+AE L +E++FVQ MN+ +K LGL THF+N++G+ HY++A D+A+++ Sbjct: 121 SGNDASVAMAEHLAGSEEQFVQMMNDKAKKLGLKNTHFVNSNGLPAENHYSSAEDLALMA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + + Y + ++ NTN V + G DG+KTGFT + + + Sbjct: 181 KALLK-YEEITKYTSLYEDYLRQDTDDEFWLVNTNKLVKFYPGVDGLKTGFTNEAKYCLT 239 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN---YIIKDFYQQNLS 286 ASA + +IAV++GA RN+ +L + +++ + + + + + Sbjct: 240 ASANKNGMRIIAVVMGAPTPKDRNRQVTEMLDYAYSQYELQRRYDRGQVLGEAEVSKGST 299 Query: 287 NEVPNISEEVCT 298 VP +++E + Sbjct: 300 KTVPALAKENVS 311 >gi|166710542|ref|ZP_02241749.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas oryzae pv. oryzicola BLS256] Length = 401 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLTAEGHHSTAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|269467932|gb|EEZ79667.1| D-alanyl-D-alanine carboxypeptidase [uncultured SUP05 cluster bacterium] Length = 379 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 7/298 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 ++ + ++A+A + A + Y +LD N+G VIA + P PAS Sbjct: 8 KKLIKLLAIATSVVTLNTQAAIFITPKAPSISASSYIVLDYNSGKVIASHKPHDKRAPAS 67 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMTAYVVF +K+ +A L + ISK A + S S + G T+ L LK +I++S Sbjct: 68 LTKLMTAYVVFQLIKDGRASLEDDVRISKKAWKTMGSKSFVEVGKTIKLKILLKGMIIQS 127 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AVA+AE + TE F +MN + LG++ T F NA G+ +TTA DMA L+ Sbjct: 128 GNDAAVALAEHIAGTEGTFTAYMNQYAAELGMNNTRFENASGLDYKDQHTTASDMAKLAS 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 DFP++ ++ K K N N + + DG+KTGFT + +N+VASA + Sbjct: 188 ATIRDFPEFYPWYSEKEFTYHDIKQRNRNKLLWSDNTVDGLKTGFTEKAQYNLVASANRM 247 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 LI+V+LG+ +R + +L GF + + I+ I + N + + +S Sbjct: 248 GMRLISVVLGSSSGESRTAQTQKVLDYGFR-FFETRIIDKINQKIPIANSTKDEIKVS 304 >gi|332993383|gb|AEF03438.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas sp. SN2] Length = 394 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/266 (33%), Positives = 141/266 (53%), Gaps = 4/266 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F++ A+ + +N A + + L D TGHVIA D PASLTK+MT Y Sbjct: 17 FMLFSALVLSANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76 Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V+ L+ L+ +TIS+NA S + G+ +++ + L+ ++V+S ND Sbjct: 77 VIGKELQAGNISLSDEVTISENAWAKKFPDSSKMFIEVGTQVSVSDLLRGIVVQSGNDAC 136 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + ++ F MN ++ +G+++++F+NAHG+ HYTT RDMA+LS + + Sbjct: 137 VAMAEHVAGSQAAFASMMNAHAQAIGMTSSNFVNAHGLHDPDHYTTPRDMAVLSRALIAE 196 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + K G K N N + L DG+KTG T +G++++ SA QGD L Sbjct: 197 TPEMYKIYSEKEFTFNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLITSASQGDMRL 256 Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265 I+V++G R + LL GF Sbjct: 257 ISVVMGTDSERARKVENKKLLKYGFR 282 >gi|167625150|ref|YP_001675444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis HAW-EB4] gi|167355172|gb|ABZ77785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis HAW-EB4] Length = 390 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 6/275 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L ++A LS + A T Y L+D NTG +IAE NPASLTK Sbjct: 8 LKTLLFATSVAALSVQAAPVVTPNAPTVAAKAYVLMDYNTGQIIAEENAYESLNPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K T +TISK A S + G +T++ K +I++S Sbjct: 68 MMTSYVIGHEIKVGNVSPTDEVTISKKAWSKNFPDSSKMFIEVGKKVTVEELNKGIIIQS 127 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMAIL Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKSTAYDMAILGA 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 I D P ++ K G K N N + L DG+KTG T +G+N+V SA + Sbjct: 188 AIIRDVPDEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGAGYNLVTSATK 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LI+V++G R S LL+ GF Sbjct: 248 DGMRLISVVMGTKSEAARKAESKKLLNYGFRFFET 282 >gi|268590223|ref|ZP_06124444.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] gi|291314506|gb|EFE54959.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM 1131] Length = 401 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 7/276 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L ++ S +A + L+D N+G ++A PD +PASLTK+MT+YV Sbjct: 17 LSLLVAVSTSAYAAQTPVAPQVDAKAFVLMDYNSGKILASGNPDERLDPASLTKIMTSYV 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 + + K +T+ ++A S K +++ + K ++++S ND Sbjct: 77 IGQAVNAGKITPQDMVTVGEDAWATGNPVLKGSSLMFLKPKDRVSVLDLNKGIVIQSGND 136 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 ++A+A+ + ++ FV MN + +GL THF HG+ G Y+TARDMA+L+ + Sbjct: 137 ASIALADYVAGSQDSFVSLMNQYVQKIGLKNTHFKTVHGLDSEGQYSTARDMALLTQAMI 196 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + PN N + L DG+KTG T +G N+VASA +GD Sbjct: 197 RDVPDEYALHKEKEFTFNKIRQPNRNRLLWNQNLKVDGVKTGHTSGAGHNLVASATEGDM 256 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V+LGA R S LL+ GF I Sbjct: 257 RLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPI 292 >gi|325929151|ref|ZP_08190294.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118] gi|325540470|gb|EGD12069.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118] Length = 401 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDSAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|297581327|ref|ZP_06943251.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] gi|297534643|gb|EFH73480.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] Length = 391 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|221235180|ref|YP_002517616.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter crescentus NA1000] gi|220964352|gb|ACL95708.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter crescentus NA1000] Length = 451 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 148/279 (53%), Gaps = 2/279 (0%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 +L + + ++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT Sbjct: 53 YLQLNASEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTD 112 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 I +S A+ P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M Sbjct: 113 QIVMSPRAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALM 172 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 + LG+ T F+NA G+ +TARD+AILS DFPQY YF +KG +G Sbjct: 173 TLRGQELGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGN 232 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + + G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ Sbjct: 233 YVKGHNRLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMED 292 Query: 259 LLSMGFY--NKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 LL GF + R + I + Y+ S + S E Sbjct: 293 LLLTGFDVIKRRSRGERTTIAANIYEDEPSGPIERPSAE 331 >gi|127513867|ref|YP_001095064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4] gi|126639162|gb|ABO24805.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4] Length = 390 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 141/274 (51%), Gaps = 6/274 (2%) Query: 2 RQFLVIIAMAM-LSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + L++ ++++ +N P ++ A + L+D N+G +IAE NPASLTK+ Sbjct: 9 KTLLLVSSLSITAANAAPVVTPDAPKVAAKAFILMDYNSGQIIAEENAYESLNPASLTKM 68 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSA 116 MT+YV+ +K +TISKNA S + G ++++ + +I++S Sbjct: 69 MTSYVIGHEIKVGNISPQDKVTISKNAWSKNFPDSSKMFIEVGKQVSVEELNRGIIIQSG 128 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMA+L Sbjct: 129 NDACVAMAEHIAGTEDGFVDLMNSWAKQLGMRDSYFENSHGLDSENHKTTAYDMALLGAA 188 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K G K N N + L DG+KTG T +G+N+V SA + Sbjct: 189 LIRDVPEEYRVYSEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATKD 248 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L++V+LG + R S LL+ GF Sbjct: 249 GMRLVSVVLGTASESARKAESKKLLNYGFRFFET 282 >gi|90406825|ref|ZP_01215017.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp. CNPT3] gi|90312062|gb|EAS40155.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp. CNPT3] Length = 385 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 146/277 (52%), Gaps = 8/277 (2%) Query: 1 MRQF-LVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ L+ + +A N + A Y L+D ++G V+AEN PASL Sbjct: 1 MKRLGLLFVGLAFSVNALATPRVIPNAPVIAAKAYLLVDFDSGKVLAENNSQKILAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TK+MT+Y++ + LK + IS+ A S + G +++D+ +I+ Sbjct: 61 TKMMTSYIIGNELKVGNIHRDDKVLISEKAWSKNFPESSKMFIEVGKEVSVDDLNHGIII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E FV MN+ + LG++ THFMN+HG+ HYTTA+DMA L Sbjct: 121 QSGNDACVAMAEYIAGSEGAFVDLMNSWAIQLGMNNTHFMNSHGLNAKDHYTTAQDMATL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ + K + G + N N + L DG+KTG T A+G+++V+SA Sbjct: 181 AKALIRDLPEEYKLYSKKSFKYNGIEQYNRNGLLWDKSLNVDGLKTGHTDAAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 ++GD LI+V++G RN S +L+ GF Sbjct: 241 VKGDMRLISVVMGTRSSTARNVESKKILNWGFRFFET 277 >gi|329929847|ref|ZP_08283523.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328935825|gb|EGG32286.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 396 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 22/289 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAE 44 M++ L+ + +A+ + S AE N P LLD +TG +I E Sbjct: 1 MKKALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYE 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 PAS+TK+MT + + E + LT + S+ A+ S + G MT+ Sbjct: 61 KNSHDKLPPASITKVMTMLLTMEAIDEGQLKLTDKVRTSEYAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF+N +G+ HY Sbjct: 121 DEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 T+A D+A++S + + Q Y ++ K NTN V + GADG+KTG Sbjct: 181 TSAHDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +T + F + A+A + +AV++GA D TRN + + F T Sbjct: 240 YTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYT 288 >gi|317121980|ref|YP_004101983.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591960|gb|ADU51256.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 438 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 16/309 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G V+ D P +PAS++KLMT + ++ + L +T+S A P Sbjct: 89 LVMDAASGRVLWAKNADEPRHPASISKLMTLLLTLEAIQAGQIRLQDQVTVSPRAQGTPG 148 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + + G +T+++ +K + V SAND VA+AE + +FVQ MN ++ LGL+ T Sbjct: 149 STAFLEVGERITVEDLIKAVAVASANDACVALAEYISGDVGRFVQRMNRRAQELGLTRTR 208 Query: 152 FMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW 205 F++ HG+ G+ +ARD+A+LS + P+ + Y I ++ NTN Sbjct: 209 FVDPHGLTDQPGNRMSARDIAVLSRYMIQYHPEILRYTSIWEDWLRKGTDREFWLTNTNK 268 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 V + G DG+KTG T SG ++V +A +GD I V+LG+ D NTR + ++ LL F Sbjct: 269 LVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGSPDSNTRWREASRLLDWAFA 328 Query: 266 NK-----TDRKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKE 317 + R ++ ++ + L EVP EE V E ++ A+ Sbjct: 329 SFDSIPIAQRGQVLRTVRVAEGRRL--EVPVTVEEAFGVTVPHGEGGRVRWTLEVAEPVP 386 Query: 318 SHFIDFEKI 326 + + +++ Sbjct: 387 APVVPGQRV 395 >gi|229525558|ref|ZP_04414963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] gi|229339139|gb|EEO04156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] Length = 391 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|294666894|ref|ZP_06732125.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603342|gb|EFF46762.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 401 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRAPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDNSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|78043555|ref|YP_360781.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77995670|gb|ABB14569.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 377 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 3/251 (1%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 L+ L++ TG ++ E AS+TKLMT + +++ K L Sbjct: 21 ALAAPLEINARAAILMEPYTGKILYEKEIHKKLPIASVTKLMTLLLAIEAVEKGKVNLED 80 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S+ A+ S G + + L + V SAND VA+AE++ E+ FV+ M Sbjct: 81 IVKVSEEAASMGGSQLYMYAGEEFSFKDLLMAVAVASANDACVAVAETVAGNEQAFVEEM 140 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N ++ LG++ THF+N++G HY+T D+AIL P ++ QIK ++G Sbjct: 141 NKKAEELGMTNTHFVNSYGFDDPNHYSTCYDLAILLREAIK-HPLFLELSQIKEFTLRGG 199 Query: 199 KYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + NTN + + G D KTG+T +G+ + ++A + D LIAV+LG + S Sbjct: 200 ETRRFNTNKLLWYYRGVDAGKTGWTEEAGYCLASTASRDDLRLIAVVLGCPVKKGHFTES 259 Query: 257 ASLLSMGFYNK 267 L + G+ N Sbjct: 260 IKLYNYGYANF 270 >gi|149909670|ref|ZP_01898322.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp. PE36] gi|149807184|gb|EDM67139.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp. PE36] Length = 388 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 99/270 (36%), Positives = 141/270 (52%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + L +AMA S I +T + L+D ++G VIAE D PASLTK+ Sbjct: 7 KLILTSLAMASFSLSAAPSVIPDTPVVAAKAFILIDFDSGKVIAEKNADDSLKPASLTKM 66 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSA 116 MT+YV+ ++ L +TISKNA S + G T+T++ + +IV+S Sbjct: 67 MTSYVIGQEIRSGNINLDDQVTISKNAWAKNFPDSSKMFIEVGKTITVEKLNQGIIVQSG 126 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VA+AE + TE F Q MN+ SK LG+ ATHF N+HG+ YTTARDMA L Sbjct: 127 NDACVAMAEYIAGTEGAFAQLMNSWSKQLGMDATHFANSHGLDSKDQYTTARDMATLGQA 186 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG 235 + D P+ + K G N N + + DG+KTG T +G+N+V+SA + Sbjct: 187 LIRDVPEEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATKD 246 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + L+AV+LG + R S LL+ GF Sbjct: 247 NMRLVAVVLGTKSADARKAESKKLLNFGFR 276 >gi|297544591|ref|YP_003676893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842366|gb|ADH60882.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 13/322 (4%) Query: 2 RQFLVII--AMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ L ++ + +S I A+T K L++ NTG ++ E P PAS+T Sbjct: 3 KKILTLLVSMIIAISFILDVTVYADTLNLKAKSAILMEANTGQILYEKDSHKPLPPASVT 62 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSAN 122 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + TE+ FV+ MN +K LG T F NA G+ GH T+ D+A++S + Sbjct: 123 DASVALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISREL 182 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K ++ K+ NTN + + G DG+KTG T + + + A+A + Sbjct: 183 VK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRA 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-- 293 D LIAV+ GA D TR +A LL GF N K + + L + +S Sbjct: 242 DTRLIAVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSGV 301 Query: 294 ----EEVCTTQKEIINYNTQMK 311 E + + E N T+++ Sbjct: 302 CHDDEYILIKKGEGKNIKTEVE 323 >gi|312110348|ref|YP_003988664.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1] gi|311215449|gb|ADP74053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1] Length = 393 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 157/358 (43%), Gaps = 23/358 (6%) Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYP 47 M++ L+ + A L I ++ E ++ L++ +TG V+ E Sbjct: 1 MKKLLIRLLLFASIFLFTISSYVHAEEKKSTARGIELASEARSAILIERDTGAVLYEKNA 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 + PAS+TK+MT ++ + + + + S+ A+ S + G MT+D Sbjct: 61 NEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F NA G+ GHY++A Sbjct: 121 LRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 DMAI++ + + Y ++ K NTN V + G DG+KTGFT Sbjct: 181 HDMAIMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTS 239 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYII--K 278 + + + A+A + +IAV+ GA RN +L F + N ++ Sbjct: 240 EAKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHA 299 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + SE + K+ + N K K ++ +K L I K+ Sbjct: 300 NVSKGKKKTVALVTSEPISVLTKKGQSVNKMEKVIKVNKNAKAPIKKGDELGVLILKQ 357 >gi|121728034|ref|ZP_01681072.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|147675663|ref|YP_001216421.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229512959|ref|ZP_04402425.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|229523260|ref|ZP_04412667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229529956|ref|ZP_04419346.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|254225715|ref|ZP_04919321.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|254285618|ref|ZP_04960582.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|121629663|gb|EAX62083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|125621723|gb|EAZ50051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|146317546|gb|ABQ22085.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|150424480|gb|EDN16417.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|227012764|gb|ACP08974.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229333730|gb|EEN99216.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229339623|gb|EEO04638.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229349852|gb|EEO14806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|327483673|gb|AEA78080.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4] Length = 391 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|284007887|emb|CBA73817.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Arsenophonus nasoniae] Length = 402 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 161/338 (47%), Gaps = 18/338 (5%) Query: 11 AMLSNIFPFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +FP A+ ++ Y L+D ++G V+ N PD +PASLTK+MT+YV Sbjct: 18 LLFIFVFPINVYADGPQVTPQLDVKAYVLMDYHSGKVLTANNPDERLDPASLTKIMTSYV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V +K K + +T+ ++A S K G +++ + + ++++S ND Sbjct: 78 VGQAIKAGKISVNDLVTVGEDAWATGNPVLHGSSLMFLKPGDRVSVLDLNRGIVIQSGND 137 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A+A+ + ++ FV MN +LGL THF HG+ G ++TA DMAIL+ + Sbjct: 138 ACIALADYVAGSQTVFVDLMNQYVTSLGLKNTHFKTVHGLDSEGQFSTAHDMAILTQALI 197 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P K K N N + + L DG+KTG T +G+N++ SA G Sbjct: 198 RDVPDEYLLHGEKVFTYNKIKQFNRNRLLWSKNLQVDGVKTGHTSGAGYNLITSATNGPM 257 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 LIAV+LGA R S LL+ GF T I K F + + N S + Sbjct: 258 RLIAVVLGAGSDRIRFTESEKLLNWGFRFFTTVIPIT-ADKPFTTEKVWYG--NRSTVLL 314 Query: 298 TTQKEIINYNTQMKEAKDKESHFI--DFEKITLLKNKI 333 T+K+ + +E K ++ + D+ K L KN++ Sbjct: 315 GTEKDAAITIPKGREQDLKTTYSLNSDYLKAPLRKNQV 352 >gi|15640963|ref|NP_230594.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9655406|gb|AAF94109.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 391 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RXVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|153213833|ref|ZP_01949039.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|229510878|ref|ZP_04400357.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229517999|ref|ZP_04407443.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229608471|ref|YP_002879119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254848079|ref|ZP_05237429.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|124115667|gb|EAY34487.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|229344714|gb|EEO09688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229350843|gb|EEO15784.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229371126|gb|ACQ61549.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254843784|gb|EET22198.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] Length = 391 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|158320620|ref|YP_001513127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140819|gb|ABW19131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 386 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 20/351 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPAS 55 ++F ++I ++++ ++ +I + P L+D NTG V+ E PAS Sbjct: 3 KKFKIMICLSLIISLALSTAIVNGDTAPFDINAKSAILIDANTGTVLYEKNIHEKLPPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT +V + K L +T+S+ AS+ + + G T++ +K + ++S Sbjct: 63 VTKIMTMLLVMEAIDSNKITLNDKVTVSERASKMGGTQLYLEPGEVKTVEELMKGVAIRS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND ++A+ E + TE+ FVQ MN +K LG++ T F+N +G+ GH TTA D+AI+S Sbjct: 123 ANDASLALGEHIAGTEELFVQEMNRRAKELGMNNTTFVNTNGLPAEGHVTTAYDIAIMSR 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + + + GK+ NTN + ++ GA+G+KTG+T + + A Sbjct: 183 ELLKHKSIHKWLTTWMDTVVVGKRQSEQSLVNTNRLINSYQGANGIKTGYTTEALHCLSA 242 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 SA +G + I+VIL A R +A LL GF N + + KD + N+S Sbjct: 243 SATRGGTTFISVILAAPSSQVRFNEAAKLLDYGFANYNT---VEVVKKDGFVGNISLNKG 299 Query: 291 NISEEVCTTQKEIINYNTQMKEAK------DKESHFIDFEKITLLKNKITK 335 +E + + + +EAK E +K + I K Sbjct: 300 KKAEIELVAKDNLNVLVKKGEEAKVHKEIVLPEFINAPIKKGDTVGEIIVK 350 >gi|58583579|ref|YP_202595.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625391|ref|YP_452763.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575165|ref|YP_001912094.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428173|gb|AAW77210.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369331|dbj|BAE70489.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519617|gb|ACD57562.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 401 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 16/323 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A Sbjct: 50 KSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWR 109 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN + Sbjct: 110 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNTYAA 169 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ ++F+NAHG+ GH+++A D+A+L + D+P Y +IK ++ K N Sbjct: 170 KIGMKDSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNR 229 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA + DQ LIAV++G R S +LL+ G Sbjct: 230 NRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRDDQRLIAVVMGDSSEEQRATDSLALLNWG 289 Query: 264 FYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD-- 315 F + K + +EV + V + + M+ K+ Sbjct: 290 FRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNLQ 349 Query: 316 ---KESHFIDFEKITLLKNKITK 335 K+ + K++L I + Sbjct: 350 APIKQGQQVGTVKVSLDGKVIAQ 372 >gi|153826135|ref|ZP_01978802.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2] gi|149740158|gb|EDM54317.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2] Length = 391 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSGTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|145298088|ref|YP_001140929.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850860|gb|ABO89181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida subsp. salmonicida A449] Length = 396 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 140/315 (44%), Gaps = 19/315 (6%) Query: 1 MRQFLVIIAMAMLSNIFP--------------FLSIAETNKLPYYTLLDTNTGHVIAENY 46 M +F + +A L + + A + L+D +G V+AE Sbjct: 1 MSKFARSVILASLISATAQANTPVPTPNAAPMVVPAAPEISAKAHILIDYYSGQVLAEAN 60 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMT 103 D PASLTK+MT+Y++ L E T +TISKNA S + G ++ Sbjct: 61 ADERLPPASLTKMMTSYIIGHELLEGNIKNTDMVTISKNAWSKNYTDSSKMFIEVGKQVS 120 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 +D+ K +I++S ND VA+AE L + F MN S LG+ T F N HG+ + GH Sbjct: 121 VDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNAWSAKLGMKDTQFKNPHGLDEEGH 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTC 222 Y+TARDMA L + D P+ + K G N N + L DG+KTG Sbjct: 181 YSTARDMARLGQALIHDQPEEYKIYAQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVS 240 Query: 223 ASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 G+N+V+SA LIAV+LGA +R S LL+ GF + Sbjct: 241 QVGYNLVSSATNNEGMRLIAVVLGASSEGSRAAESKKLLTYGFRFFQSLTPYKAGTELVT 300 Query: 282 QQNLSNEVPNISEEV 296 Q+ + P + V Sbjct: 301 QKIWMGDKPEVKLGV 315 >gi|114771313|ref|ZP_01448733.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha proteobacterium HTCC2255] gi|114548238|gb|EAU51125.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha proteobacterium HTCC2255] Length = 481 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 2/303 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 L + F ++ ++D TG V+ D +PASLTK+MT Y+ F ++ Sbjct: 9 FFLVVVLIFTGVSAYAAPYAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLAFKAVE 68 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L + +S+NA+ PPS + G + + + ++ VKSAND A A+ E++ + Sbjct: 69 SGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGEAIAGS 128 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E KF M +K LG+ T F NAHG+ GH +TARDM+IL + DFP Y + F Sbjct: 129 EAKFTALMTAQAKALGMKRTTFKNAHGLTARGHLSTARDMSILGRHLMYDFPDYYNLFSR 188 Query: 191 KGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + + PNTN + + GADG+KTG+T A+GFN+V+SA +G++ +IA + G Sbjct: 189 RNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVFGGRTW 248 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-SEEVCTTQKEIINYNT 308 +RN A LL MGF R N I + N + V I V II+ + Sbjct: 249 RSRNARVAELLDMGFNRTPKRYTSNAIPARPSRGNQLDSVALILPGNVSIKSPRIISSSP 308 Query: 309 QMK 311 + K Sbjct: 309 KPK 311 >gi|225182115|ref|ZP_03735543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225167202|gb|EEG76025.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 382 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 10/288 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L++ ++G + E D P PAS TK+MT + F L+ +S+ Sbjct: 26 DSRADVAVLMEASSGQFLYEKNADTPLPPASTTKIMTLLLAFEALERGDIDWDDTTIVSR 85 Query: 85 NASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 NA S +++ + + + + SAND VA+AE L +E+ FVQ MN + Sbjct: 86 NAWSAEVVGSRMFLDLDQEVSIRDLIYGISIVSANDGTVALAEHLSGSEEAFVQQMNQRA 145 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ T F N G+ GH +ARD+AILS + + P + N Sbjct: 146 QELGMTNTVFRNTSGLPADGHVMSARDIAILSRELIVNHPGILDIETQPEFTFNDIHQYN 205 Query: 203 TN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + +F GA+G+KTG+T S FN+ +A++ + LI+V++GA + R ++ LL+ Sbjct: 206 WNRRFLSSFEGANGLKTGWTDESRFNLAGAALRDGRQLISVVMGAESESERVAATSELLN 265 Query: 262 MGFYNKT-------DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 GF + +KD QQ + VP E +E Sbjct: 266 HGFNQFSPQTIAQKGEVVAEVAVKDGRQQVVPVTVPQEVEVAVPQGRE 313 >gi|290473971|ref|YP_003466845.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus bovienii SS-2004] gi|289173278|emb|CBJ80053.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus bovienii SS-2004] Length = 401 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 10/275 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ F V + + L + + A Y L+D +G ++A + PD +PASLT Sbjct: 10 IKSFTVGLGIFWLMGVNTYAMDEPAAPEIDAKSYILMDYASGKILASHNPDERLDPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+MT+YVV +K K +T+ K+A S K G + + + + + Sbjct: 70 KVMTSYVVGQSIKSGKISTEDQVTVGKDAWATGNPALKGSSLMFLKPGDRVKVIDLNRGI 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN SK LGL THF HG+ G Y+TARDMA Sbjct: 130 VIQSGNDASIALADYVAGSQDAFVDLMNKYSKTLGLENTHFKTVHGLDAAGQYSTARDMA 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230 +LS + D P+ + K + PN N + + DG+KTG T +G+N+VA Sbjct: 190 LLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNQNMNVDGVKTGHTSGAGYNLVA 249 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 SA +G LI+V+LGA R S +LS GF Sbjct: 250 SAAEGSMRLISVVLGAPSDRMRFSDSEKILSWGFR 284 >gi|83858300|ref|ZP_00951822.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853123|gb|EAP90975.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633] Length = 399 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 6/280 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 MR+ L ++A+ +S ++ A + + +LD +G V+ + P PAS++KL Sbjct: 19 MRRLLCLLALITVSLSPSAMAQSAFDTRASHAVILDYESGDVLFSKNGEEPMPPASMSKL 78 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 MTA +VF L++ + L T + +S+NA S S + + ++ +IV+ Sbjct: 79 MTALMVFEALEDGRFTLDTSLPVSENAWRRGGAASGSSTMFLDVNSRAEVGDLIRGIIVQ 138 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + +AE+L TE+ F Q M + LGL + F NA G H +A D+A L+ Sbjct: 139 SGNDACIVVAEALGGTEENFAQMMTERAHELGLESASFANATGWPDPDHRISALDLARLA 198 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I +PQY + G + N N +G F GADG+KTG T SG+ +VASA + Sbjct: 199 RHIIETYPQYYDIYSETEFTYNGIRQYNRNPLLGVFDGADGLKTGHTEESGYGLVASAER 258 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + I V G R S L+ F + + Sbjct: 259 DGERRIVVFNGMDSNRARADESERLMRAAFSEFSTVDLVE 298 >gi|194367218|ref|YP_002029828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] gi|194350022|gb|ACF53145.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A + PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 55 KAWVLMDYATGQVLAGENINEQLAPASITKVMTSYVIAAEVKNGKVRPDDQVMMSERAWR 114 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 115 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 174 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ +HF+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K PN Sbjct: 175 KIGMKNSHFVNAHGLTAPGHHSSAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNR 234 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ L+AV+LG R S +LL+ G Sbjct: 235 NLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLVAVVLGGQSEKQRADDSLALLNWG 294 Query: 264 FYNKTDRKK 272 F + Sbjct: 295 FRFFETHRL 303 >gi|320015830|gb|ADV99401.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 401 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 138/271 (50%), Gaps = 8/271 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +T Sbjct: 34 AAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVT 93 Query: 82 ISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + K+A S K G + + + K ++++S ND ++A+A+ + ++ FV Sbjct: 94 VGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFV 153 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 154 GLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTF 213 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + L DGMKTG+T G+N+VASA G LI+V+LGA R Sbjct: 214 NKIRQTNRNRLLWNSSLNVDGMKTGYTNGVGYNLVASATDGPMRLISVVLGAPSDKVRFS 273 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F + + Sbjct: 274 ESEKLLTWGFRFYETVVPI-KSTKPFVTEKV 303 >gi|296134797|ref|YP_003642039.1| Beta-lactamase [Thiomonas intermedia K12] gi|295794919|gb|ADG29709.1| Beta-lactamase [Thiomonas intermedia K12] Length = 413 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 10/264 (3%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 AML+ + P + ++D +G ++AE+ PASLTKLMTAY+ F LK Sbjct: 51 AMLATVPP-----PKLDARSWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALK 105 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 E L +T SK A + S +++++ L +IV+S ND A+ +A+++ + Sbjct: 106 EGTIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGS 165 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQ 189 FV MN ++ GL THFM+ G+ GH+TTA D++I++ I DFP Y YF+ Sbjct: 166 VSAFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFK 225 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILG 245 +K PN + T DGMKTG+T +G+ ++ SA + G + L+ V++G Sbjct: 226 VKEFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSAQRQFPNGPRRLLTVVMG 285 Query: 246 ALDRNTRNKVSASLLSMGFYNKTD 269 R + S LL+ + N D Sbjct: 286 TPTERARGEESQVLLNWAYQNFDD 309 >gi|90414079|ref|ZP_01222062.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90324874|gb|EAS41402.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 391 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 4/251 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A Y L+D N+G +IAEN D +PASLTK++T+YV+ +K L +++ Sbjct: 33 APQIAAKAYILMDYNSGKIIAENNSDERLHPASLTKMLTSYVIGQEIKSGNISLDDKVSV 92 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 S NA S + G +T+ K +I++S ND A+AE + + FV+ MN Sbjct: 93 SNNAWAKNFPGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTDSFVELMN 152 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K +G+ ++HF+N HG+ H++TA DMA L+ + D P ++ K G Sbjct: 153 AWAKRIGMESSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFTYNGIT 212 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + L DGMKTG T +G+++VASA +G+ LI+V++G N R S Sbjct: 213 QYNRNGLLWDKSLNVDGMKTGHTDQAGYSLVASAYEGEMRLISVVMGTKSANARKAESKK 272 Query: 259 LLSMGFYNKTD 269 LL+ GF Sbjct: 273 LLNYGFRFFET 283 >gi|163801380|ref|ZP_02195279.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] gi|159174869|gb|EDP59669.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] Length = 388 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 8/300 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R + + + S+ P L++ + Y L+D +G +IAE PASL Sbjct: 4 LRTRFTFVCLLLASSCLPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASL 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S + +T+ N ++ +I+ Sbjct: 64 TKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPNDEITIANLMRGVII 123 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L Sbjct: 124 QSGNDACVALAEHVAGSEGAFVSLMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATL 183 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I D P+ + K + N N + + DG KTG+T +G+++V+SA Sbjct: 184 MQAIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSA 243 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 QG LI+V++G + +R S +LLS GF ++ + +V I Sbjct: 244 KQGKMRLISVVMGTPSKQSRITQSKNLLSYGFRFYGTKQVAKQGEVQASAKVWKGDVSKI 303 >gi|117619099|ref|YP_857750.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560506|gb|ABK37454.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 396 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 134/288 (46%), Gaps = 19/288 (6%) Query: 1 MRQFLVIIAMAMLSNIFP--------------FLSIAETNKLPYYTLLDTNTGHVIAENY 46 M +F + +A L + + A + L+D +G V+AE Sbjct: 1 MSKFARSVILASLISATAQANTPVPTPNANPVVVPAAPEISAKAHILIDYYSGQVLAEQN 60 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMT 103 + PASLTK+MT+Y++ L + T +TIS+NA S + G ++ Sbjct: 61 AEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKNYSDSSKMFIEVGKQVS 120 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 +D+ K +I++S ND VA+AE L + F MN+ + LG++ +HFMN HG+ GH Sbjct: 121 VDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGMNDSHFMNPHGLDAEGH 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTC 222 Y+TA DMA L + D P + K G N N + L DG+KTG Sbjct: 181 YSTAHDMARLGQALIRDLPDEYKIYAQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVS 240 Query: 223 ASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G+N+V+SA LIAV+LGA +R S LL+ GF Sbjct: 241 QVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYGFRFFQS 288 >gi|153817207|ref|ZP_01969874.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457] gi|227081121|ref|YP_002809672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229505452|ref|ZP_04394962.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|298498936|ref|ZP_07008743.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] gi|126512241|gb|EAZ74835.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457] gi|227009009|gb|ACP05221.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229357675|gb|EEO22592.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|297543269|gb|EFH79319.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] Length = 391 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|16126400|ref|NP_420964.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15] gi|13423656|gb|AAK24132.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15] Length = 435 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 148/279 (53%), Gaps = 2/279 (0%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 +L + + ++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT Sbjct: 37 YLQLNASEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTD 96 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 I +S A+ P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M Sbjct: 97 QIVMSPRAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALM 156 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 + LG+ T F+NA G+ +TARD+AILS DFPQY YF +KG +G Sbjct: 157 TLRGQELGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGN 216 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N + + G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ Sbjct: 217 YVKGHNRLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMED 276 Query: 259 LLSMGFY--NKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 LL GF + R + I + Y+ S + S E Sbjct: 277 LLLTGFDVIKRRSRGERTTIAANIYEDEPSGPIERPSAE 315 >gi|313202207|ref|YP_004040865.1| beta-lactamase [Methylovorus sp. MP688] gi|312441523|gb|ADQ85629.1| Beta-lactamase [Methylovorus sp. MP688] Length = 378 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 7/316 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R F ++ A+ L+ + + + Y L D N+ IA+ D PASLTKLMT Sbjct: 6 RIFTLVAAVCSLTVQAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPASLTKLMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AY+ F +K LT + IS A + S + +T+D L +I++S ND ++ Sbjct: 66 AYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQSGNDASI 125 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE+ F MN + LG+ THFMNA G+ HYTTA D+++L+ + DF Sbjct: 126 ALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLASALIRDF 185 Query: 182 PQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+ Y + K PN N + DGMKTG T +G+ +++SA +G+ LI Sbjct: 186 PEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAKRGETRLI 245 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD------RKKINYIIKDFYQQNLSNEVPNISE 294 +V+LG + R S LL+ GF + IN + Q NL Sbjct: 246 SVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVAATVPTDL 305 Query: 295 EVCTTQKEIINYNTQM 310 + + E ++ Sbjct: 306 SITLPKGEYARVKAKV 321 >gi|192360123|ref|YP_001981301.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus Ueda107] gi|190686288|gb|ACE83966.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus Ueda107] Length = 405 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 130/253 (51%), Gaps = 2/253 (0%) Query: 20 LSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++I + +L Y L+D TG +IAE + PASLTK+M++Y++ L++ + Sbjct: 46 VAIPQAPQLAATGYILVDATTGSIIAEFNAEQKLPPASLTKMMSSYLIVDELEKGRYQEQ 105 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T + IS A + S K+G+ + L + L+ +I++S ND VA+AE E FV Sbjct: 106 TLVPISVKAWQMGGSRMFVKEGTQVPLIDLLRGVIIQSGNDATVALAEYHSGNEDAFVDR 165 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN + LG+ THF N+ G GH TTA+D+AIL+ I D P Y K Sbjct: 166 MNQKAAELGMVNTHFENSSGWPAEGHLTTAKDLAILARAIINDHPIYYPLHAEKYFVYND 225 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + DG+KTG T +G+ +VAS+ + + LIAV++G + R + Sbjct: 226 IRQRNRNELLFRDETVDGLKTGHTEEAGYCLVASSKRENTRLIAVVMGTANEKARAAETQ 285 Query: 258 SLLSMGFYNKTDR 270 LL+ GF Sbjct: 286 KLLAYGFRYFQTT 298 >gi|303241570|ref|ZP_07328070.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302590888|gb|EFL60636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 403 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 28/320 (8%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETN---------------------KLPYYTLLDTN 37 +R+ L +I + +++N+F + AE K L+D Sbjct: 2 IRKVLFRHLIVICIVANLFSVFAFAEEERPVYNPNTVNSIMASTSISELKAKASVLMDAY 61 Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG V+ EN + AS+TK+M+ + + K L +T S+ AS S + + Sbjct: 62 TGQVLYENKSNEKLPIASVTKVMSMLLAMEAIDSGKISLKDMVTASEYASGMGGSQAYIE 121 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G ++ +ALK + + S+ND+ V++AE + +E+ FV MN + LG+ T F + G Sbjct: 122 PGEQYSVHDALKAIALHSSNDVTVSVAELVAGSEEAFVVQMNEKAGELGMKNTLFKDCTG 181 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADG 215 + GH+++A D+A++S + T P+ + Y + + ++ NTN V + G DG Sbjct: 182 LTDEGHFSSANDIALMSRELVTKHPKILEYSSVYTDTFRNGEFDLTNTNRLVKFYSGCDG 241 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KK 272 +KTGFT A+GF + A+ + + LI+V+LG D NTR + LL GF N KK Sbjct: 242 LKTGFTRAAGFCLSATVSRNNMRLISVVLGEPDSNTRFAETRKLLDYGFANYETADVNKK 301 Query: 273 INYIIKDFYQQNLSNEVPNI 292 + + ++ L+++ + Sbjct: 302 GELVSEISVKKGLTSKAAGV 321 >gi|238753434|ref|ZP_04614797.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] gi|238708387|gb|EEQ00742.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] Length = 401 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V + +L P + A+ P Y L+D N+G ++ + D +PASLTK+M Sbjct: 13 VTFSAGLLLLTMPAVRAADEQPAPPIDAKAYVLMDFNSGKILTQGNADQRLDPASLTKIM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVK 114 ++YV+ +K K +T+ K+A S K G + L + K ++++ Sbjct: 73 SSYVIGQAIKAGKVHPDDMVTVGKDAWATGNPVLRGSSLMFLKPGDQVKLLDLNKGIVIQ 132 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND ++A+A+ + ++ FV MNN +K LGL THF+ HG+ G Y+TARDMA+L+ Sbjct: 133 SGNDASIALADYIAGSQDSFVGLMNNYAKALGLDNTHFLTVHGLDAEGQYSTARDMAVLA 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P+ + K + N N + T L DG+KTG T +G N+VASA Sbjct: 193 QALIRDVPEEYALHKEKEFTFNNIRQINRNRLLWNTNLNVDGVKTGHTAGAGHNLVASAT 252 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 G LI+V+LGA R S LLS GF I K F Q + Sbjct: 253 DGPMRLISVVLGAPSDRVRFSESEKLLSWGFRFYETVVPI-KTDKAFVTQKV 303 >gi|328543443|ref|YP_004303552.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326413187|gb|ADZ70250.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 486 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 98/268 (36%), Positives = 150/268 (55%), Gaps = 7/268 (2%) Query: 1 MRQFL-------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR + + A+ ++ SIA+ N ++D TG + D P P Sbjct: 1 MRSLVSVWTLPRIAKALLLIGLFASLPSIAQANAKYAGIVVDAKTGKTLYAASADEPRYP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK+MT YVVF L+ ++ L TP+ +S A+ PPS K GST+++ +A+ LI Sbjct: 61 ASLTKIMTLYVVFEELEARRLSLDTPLKVSAYAAGQPPSKIGLKPGSTISVKDAILALIT 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KSAND+AV +AE++ +E +F + M T++ +G++ T F N HG+ G TTARDMA L Sbjct: 121 KSANDVAVVVAENIGGSEARFAERMTRTARQIGMTRTTFRNPHGLPNSGQRTTARDMAQL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 I+ FP Y YF+ + +G+ Y N N +G G DG+KTGF ASGFN+V S Sbjct: 181 GRAIQERFPSYYGYFKTRSFAYRGRTYGNHNKLLGHVAGVDGIKTGFIRASGFNLVTSVN 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLS 261 + + ++AV++G +R+ L++ Sbjct: 241 RDGRHVVAVVMGGQTGRSRDAQMVKLIN 268 >gi|20807777|ref|NP_622948.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20516333|gb|AAM24552.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 380 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 151/346 (43%), Gaps = 23/346 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M+++ ++ + M F + S + ++D NTG V+ E AS TK Sbjct: 1 MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + + L +T+S+ A+ S+ G + +++ L +++ S ND Sbjct: 61 IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + T + FV+ MN +K +G THF+ G+ HYTTA D+A+++ Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175 Query: 177 IKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 ++P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 176 AFLNYPKFAEIVSTKEKTIPCEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 SA + + IAV+L + + S +L F K ++ + + E Sbjct: 236 SATREGRRFIAVVLNSPPM---WEDSMKILDYAFSRF---KPFKVFERNDVVKKVKVEKG 289 Query: 291 NISEEVCTTQKEIINYNTQMKEAK-DKESHFID-FEKITLLKNKIT 334 I E +K+ I ++ + K + E H D E KI Sbjct: 290 KIEEIEVAVEKDCIIPVSEEEIGKVNLEFHIPDKLEAPIKKGEKIG 335 >gi|288958656|ref|YP_003448997.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288910964|dbj|BAI72453.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 396 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 132/275 (48%), Gaps = 7/275 (2%) Query: 2 RQFLVIIAMAML-------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R V +AM P + L+D + V+ E D P+ Sbjct: 14 RSVAVAAGIAMAGATIGAGFTAVPVQAATIDTIAKQAILVDLTSNTVLFEKNADERMAPS 73 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S++K+MTAY+VF +K + L + + +S+ A S + + + +D+ LK +IV+ Sbjct: 74 SMSKIMTAYMVFEAIKAGRLTLESTLPVSERAWRMQGSKMFVELHNNIKVDDLLKGMIVQ 133 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + +AE L +E+ F + +K LGL +++F+NA G HY TARD+AIL+ Sbjct: 134 SGNDACIVLAEGLAGSEQSFAEQATKRAKELGLKSSNFVNATGWPDPNHYMTARDLAILA 193 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 R+ DFP++ Y I+ + G N N + + DG+KTG T A G+ + AS + Sbjct: 194 ERLIKDFPEFYKYDSIREFKYHGITQGNRNPLLYRNMNVDGLKTGHTDAGGYGLTASGER 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + L+ V+ G R SA L+ GF Sbjct: 254 DGRRLLLVVNGLPSMQARADESARLIEWGFREFAS 288 >gi|310642625|ref|YP_003947383.1| d-ala-d-ala carboxypeptidase dacf; serine peptidase; merops family s11 [Paenibacillus polymyxa SC2] gi|309247575|gb|ADO57142.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Paenibacillus polymyxa SC2] Length = 397 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 24/291 (8%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPY----------------YTLLDTNTGHVI 42 M++ +V I+A + P AE ++ L+D +TG VI Sbjct: 1 MKKKVVAFILACLVALTAVPVGGWAEESRPESKTKVGSAAELAPEALSAILMDADTGTVI 60 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102 E PAS+TK+MT + + + K LT + S+ AS S + G M Sbjct: 61 YEKNSREKLPPASITKIMTMLLTMEAIHDGKLKLTDKVRASEYASSMGGSQIFLEPGEEM 120 Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 T+D LK + + S ND +VA+AE + +E+ FV+ MN + LGL THF N +G+ Sbjct: 121 TVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVEMMNAKVQQLGLKDTHFANCNGLPVEN 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMK 217 HY++A D+A++S + +PQ Y ++ +K NTN V + GADG+K Sbjct: 181 HYSSAHDIAVMSRELLK-YPQITKYTGAYQDYLRKSSVKPFWLVNTNKLVRFYTGADGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 TG+T + F + A+A + ++AV+LG + RN +S+ F T Sbjct: 240 TGYTSEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQYT 290 >gi|295399047|ref|ZP_06809029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus thermoglucosidasius C56-YS93] gi|294978513|gb|EFG54109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus thermoglucosidasius C56-YS93] Length = 393 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 23/358 (6%) Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYP 47 M++ L+ + A L I ++ E N+ L++ +TG V+ E Sbjct: 1 MKKQLIRLLLFASVFLFTISSYVHAEEKKSTARGIELANEARSAILIERDTGAVLYEKNA 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 + PAS+TK+MT ++ + + + + S+ A+ S + G MT+D Sbjct: 61 NEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F NA G+ GHY++A Sbjct: 121 LRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 DMAI++ + + Y ++ K NTN V + G DG+KTGFT Sbjct: 181 HDMAIMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTS 239 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYII--K 278 + + + A+A + +IAV+ GA RN +L F + N ++ Sbjct: 240 EAKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHA 299 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + SE + K+ + N K K ++ +K L I K+ Sbjct: 300 NVSKGKKKTVALVTSEPISVLTKKGQSVNKIEKVIKVNKNAKAPIKKGDELGVLILKQ 357 >gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 385 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 151/321 (47%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MTL+ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTLNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F T +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYTTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|154500121|ref|ZP_02038159.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC 29799] gi|150271211|gb|EDM98480.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC 29799] Length = 383 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 2/250 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S T L++ TG ++ E PAS+TK+MT +V + + L + Sbjct: 28 SGTPTVNCGAAVLMEKETGTILYEQNSHDKLEPASVTKIMTLLLVMEAVDSGRISLDQTV 87 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 TIS +A S K+G MT+ + LK + V SAND AVA+AE + +E+ FV MN Sbjct: 88 TISAHAVSMGGSQIWLKEGEQMTVHDLLKAVAVVSANDGAVALAELVAGSEEGFVALMNQ 147 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--K 198 + LG++ T F+N G+ GH T+A D+A++S + + P Y I ++ Sbjct: 148 RAAELGMADTTFVNCTGLPAAGHLTSAHDIALMSRELILNHPSIREYTTIWMDSLRDGAF 207 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + NTN + + GA G+KTG T ++ + + A+A +G LIAV+L + R + + Sbjct: 208 QLTNTNKLIRFYDGATGLKTGSTDSALYCLSATAERGGMELIAVVLKSPTSQDRFDAARA 267 Query: 259 LLSMGFYNKT 268 LL GF N T Sbjct: 268 LLDYGFANYT 277 >gi|86748470|ref|YP_484966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86571498|gb|ABD06055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 499 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 105/288 (36%), Positives = 161/288 (55%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 L++ +TG V+ +PW PAS+TK+MTAYV +KE + L + +T+S A Sbjct: 32 SAEALLLVEADTGKVLQAENATYPWYPASVTKIMTAYVTLKAVKEGRLTLDSLLTVSPVA 91 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + PS F G+ +T+DNALK+++VKSANDIAV +AE + + F MN T++ LG Sbjct: 92 AAQSPSKMGFAPGTLITVDNALKMMMVKSANDIAVVLAEGVGGSVDGFSDMMNTTAQRLG 151 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 ++ TH++N +G+ G T+ARD+AIL+ + D P+Y H+ I + + N N Sbjct: 152 MTQTHYVNPNGLPAEGQVTSARDLAILARAVLRDLPEYEHFMHIPAIRFGKRVTHNFNKL 211 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +G + GADG KTGF CASG+N+VASA + + LIAV+LGA R +A LL GF Sbjct: 212 IGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGQDRAVKAAQLLERGFSA 271 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 T + + PN+ +E+C +++ + + A Sbjct: 272 NTLAWLTPSLGTVDNLAPIDATPPNLRDEMCGPKRKRPASDEDEQVAS 319 >gi|121591022|ref|ZP_01678339.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121547132|gb|EAX57264.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] Length = 386 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|157369871|ref|YP_001477860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] gi|157321635|gb|ABV40732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 401 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 161/346 (46%), Gaps = 16/346 (4%) Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ +++ +L+ A Y L+D N+G ++AE D +PASLT Sbjct: 10 LKKLTFSVSILLLAVPVVQAAEAPAAPQVDAKAYVLMDYNSGKILAEGNADTRLDPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + + K + Sbjct: 70 KIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVPVMELNKGI 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MNN +K+LGL THF+ HG+ G Y+TARDMA Sbjct: 130 VIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQYSTARDMA 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +L + D P + K + N N + T L DG+KTG+T +G N+VA Sbjct: 190 LLGQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLLWSTNLSVDGIKTGYTGGAGHNLVA 249 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL----S 286 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 250 SATDGPMRLISVVLGAPSDRIRFSESEKLLTWGFRFYETATPI-KTDKPFVTQKVWFGDV 308 Query: 287 NEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 EVP ++++ T + N + ++ + K ++ Sbjct: 309 GEVPLGVAKDAAVTIPKGQMKNLKASYKLNQPTLEAPLAKNQVVGT 354 >gi|332527505|ref|ZP_08403557.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] gi|332111912|gb|EGJ11890.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax benzoatilyticus JA2] Length = 381 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 7/275 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ L + ++ + Y L+D + V+AE D P +PASLTKLM Sbjct: 1 MKRLLSLALAFFVAGAHAQAPVPPEVAARQYILIDVSANQVLAERDADTPADPASLTKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 +AY+VF+ +++ K L + +S A + Y S +D L+ +IV+S N Sbjct: 61 SAYLVFNAVRDGKLALDQRVPVSTRAWDERKYGGSLMFIDTRMQPRVDELLRGMIVQSGN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE++ T + FV MN ++ GL T F N G+ + GH TT R++A ++ RI Sbjct: 121 DATVALAEAVGGTVENFVAMMNKQAQAWGLKNTQFRNPSGLTEAGHKTTPREIAYIATRI 180 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235 D PQ+ + + + N N +G DGMKTG+T A+G+ +VASA + Sbjct: 181 IQDHPQFYPIYSERAFAFNNIRQDNRNLLLGRDPSVDGMKTGYTEAAGYCLVASAQRDMP 240 Query: 236 --DQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + L++V++G R S LL+ G+ Sbjct: 241 NGKRRLLSVVMGTASMQARANESQKLLNWGYAAWD 275 >gi|329893664|ref|ZP_08269798.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC3088] gi|328923591|gb|EGG30903.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium IMCC3088] Length = 389 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 141/280 (50%), Gaps = 7/280 (2%) Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L A +S + + L+D TG+VIAE+ + PASLTK Sbjct: 1 MQKLLATAAALGFSVSVSAAIIPAPPEVAARAHYLIDATTGYVIAESNANEQLPPASLTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 LMT+YV+ ++ + + IS+NA P S + G +++ + K +++ Sbjct: 61 LMTSYVLSYEIERGRVAFDDKVLISENAWAQNPIFKGSSLMWLEPGMEVSISDLEKGIVI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND VAIAE L E F MN ++ LG++ ++F N+HG+ H TTA D+A+L Sbjct: 121 SSGNDATVAIAEHLAGNETAFADMMNTHAQRLGMNDSYFENSHGLPSPNHLTTAHDLALL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I DFP + + + K N N +G DG+KTG+T +G+ +V+SA Sbjct: 181 AKAIIQDFPTHYQIYAERDYTFNNIKQYNRNTLLGEDPSVDGLKTGYTSEAGYGLVSSAK 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +GD LI+V+LG TR + SLL+ GF + + Sbjct: 241 RGDMRLISVVLGTSSAKTRASETRSLLNYGFRYFETAELL 280 >gi|300935769|ref|ZP_07150733.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300974063|ref|ZP_07172437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300308960|gb|EFJ63480.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300459040|gb|EFK22533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|315285607|gb|EFU45049.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|324015750|gb|EGB84969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] Length = 347 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI+ T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|190575883|ref|YP_001973728.1| putative penicillin-binding protein [Stenotrophomonas maltophilia K279a] gi|190013805|emb|CAQ47442.1| putative penicillin-binding protein precursor [Stenotrophomonas maltophilia K279a] Length = 404 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 20/325 (6%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 53 KAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWR 112 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 113 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 172 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN Sbjct: 173 KIGMKDSHFVNAHGLTAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNR 232 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+ G Sbjct: 233 NLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWG 292 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN-------------TQM 310 F + ++ K + + + ++ Q +++ + Sbjct: 293 FR-FFETHRLYEPGKAVAEHKVWKGTTD-KVQLGVAQPMLVSVPRGRYNDLKPSIDVPKT 350 Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335 EA I K+TL I + Sbjct: 351 LEAPFTAGQQIGTVKVTLDGKVIAE 375 >gi|260774871|ref|ZP_05883772.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260609126|gb|EEX35284.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 392 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 135/271 (49%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + ++ S+ F + A Y L+D N+G ++AE + +PASLTK+MT+ Sbjct: 15 IALSATFASSSFATPIVVPDAPQIAAKGYVLMDYNSGKILAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L+ L +TISKNA S + G+T+ ++ + +IV+S ND Sbjct: 75 YVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEELNRGIIVQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + LG+ THF N HG+ Y+T DMA+L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTLGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 255 LVAVVMGTKNANARKSESKKLLSYGFRFFET 285 >gi|260598500|ref|YP_003211071.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter turicensis z3032] gi|260217677|emb|CBA32019.1| D-alanyl-D-alanine carboxypeptidase dacD [Cronobacter turicensis z3032] Length = 412 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 152/337 (45%), Gaps = 17/337 (5%) Query: 5 LVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ + ML+ I A Y L+D TG ++A N NPASLT Sbjct: 30 MIAASCIMLAGITAQAHAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLT 89 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLL 111 KLMT YVV + + +T+ K+A S K G +T+ + + L Sbjct: 90 KLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGL 149 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV S ND VA+A+ + + +FV MN+ + LGL THF HG+ G +++A D+A Sbjct: 150 IVDSGNDACVALADYVAGGQPQFVSMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLA 209 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +LS I P + H + K L G N N + L DG+KTG T +GFN++A Sbjct: 210 VLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIA 269 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 S++ G + LIAVI+GA R + LL G + + K ++ + Sbjct: 270 SSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKNE 329 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 ++ T ++ + + A K + +D E++ Sbjct: 330 QVA---VGTDRDFWLTLPKAQLANVKAKYLLDRERLD 363 >gi|254000240|ref|YP_003052303.1| beta-lactamase [Methylovorus sp. SIP3-4] gi|253986919|gb|ACT51776.1| Beta-lactamase [Methylovorus sp. SIP3-4] Length = 378 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 148/316 (46%), Gaps = 7/316 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R F ++ + L+ + + + Y L D N+ IA+ D PASLTKLMT Sbjct: 6 RIFTLVATVCSLTVQAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPASLTKLMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AY+ F +K LT + IS A + S + +T+D L +I++S ND ++ Sbjct: 66 AYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQSGNDASI 125 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE+ F MN + LG+ THFMNA G+ HYTTA D+++L+ + DF Sbjct: 126 ALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLASALIRDF 185 Query: 182 PQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+ Y + K PN N + DGMKTG T +G+ +++SA +G+ LI Sbjct: 186 PEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAKRGETRLI 245 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD------RKKINYIIKDFYQQNLSNEVPNISE 294 +V+LG + R S LL+ GF + IN + Q NL Sbjct: 246 SVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVAATVPTDL 305 Query: 295 EVCTTQKEIINYNTQM 310 + + E ++ Sbjct: 306 SITLPKGEYARVKAKV 321 >gi|117624214|ref|YP_853127.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli APEC O1] gi|301019170|ref|ZP_07183370.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301050040|ref|ZP_07196954.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301648516|ref|ZP_07248240.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|309797269|ref|ZP_07691664.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|331658091|ref|ZP_08359053.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA206] gi|115513338|gb|ABJ01413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Escherichia coli APEC O1] gi|300298224|gb|EFJ54609.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300399363|gb|EFJ82901.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301073419|gb|EFK88225.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|308119144|gb|EFO56406.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|320198701|gb|EFW73301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|323183797|gb|EFZ69188.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1357] gi|323951763|gb|EGB47637.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323972841|gb|EGB68040.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|324008953|gb|EGB78172.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|326338366|gb|EGD62194.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|326347113|gb|EGD70846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|331056339|gb|EGI28348.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 6b) (PBP-6b) [Escherichia coli TA206] Length = 347 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI+ T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 385 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + I S+ V K+ + + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKIDLVASDNVSLLMKKGESMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|260773924|ref|ZP_05882839.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] gi|260610885|gb|EEX36089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] Length = 388 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 133/281 (47%), Gaps = 12/281 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M+ I+ A + P +S A Y L+D +TG V+ E+ + N Sbjct: 1 MKNIKSIVVSATCLSFIPLVSDATPIVVPNPPQLSAKGYVLMDYHTGTVLVEHNAHNKLN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PASLTKLMT+YV +K + IS+ A S + G+ + + + + Sbjct: 61 PASLTKLMTSYVAGQEMKRGNISPDDQVVISQRAWARNFPDSSKMFIEVGTKVNMMDLYR 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LIV+S ND +VAIAE + +E FV MN+ + LGL+ T F N HG+ G Y+T D Sbjct: 121 GLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAATLGLTNTAFTNPHGLDSSGLYSTPYD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L+ I D P+ + G N N + + DGMKTGFT +GF++ Sbjct: 181 IAKLAQAIIRDLPEIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGFSL 240 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 SA G+ LI+V++G+ R S LLS GF Sbjct: 241 TTSATNGNMRLISVVMGSNSAKGREADSKQLLSYGFRFFET 281 >gi|218549792|ref|YP_002383583.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia fergusonii ATCC 35469] gi|218357333|emb|CAQ89970.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia fergusonii ATCC 35469] gi|324114754|gb|EGC08722.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253] gi|325498188|gb|EGC96047.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia fergusonii ECD227] Length = 403 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ + NI + A + L+D N+G V+AE D Sbjct: 10 MQRLALTTALCTAAISGAHADDLNIKTMIPGAPQIDAEAWILIDYNSGKVLAEQNADTRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADYAAGSQDAFVGLMNSYVNALGLKNTHFETVHGLDAEGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTNQA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|146296751|ref|YP_001180522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410327|gb|ABP67331.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family S11 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 384 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 25/346 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----------AETNKLPYYTLLDTNTGHVIAENYPDH 49 M++ L ++ ++ + F+ + L+D +TG V+ E Sbjct: 1 MKRILTLLILSFFLSSLNFIRAFCQTQNNELTNSPELSAMSAILVDFDTGRVLFEKNSHE 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 PAS+TK+MT ++ +++ K L+ + S+NA+ S K+ MT++ LK Sbjct: 61 KLPPASITKIMTMILICEAIEKGKLKLSDKVIASQNAASLGGSQVYLKENEEMTVEELLK 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + + SAND VA+AE L + + FV MN +K LG+ T+F+N +G+ GHYT+A D Sbjct: 121 SIAIASANDACVALAEHLAGSVQGFVYMMNQKAKELGMLDTNFVNPYGLDAEGHYTSAYD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFN 227 +A++S + +Y ++ K+ NTN V + G G+KTG T + F Sbjct: 181 VAVMSRELLK-HKLVRNYLTTWVDTVRDGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKFC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 I ASA + LIAVI+ A D TR + LL GF N + + + Sbjct: 240 ISASAQRNALHLIAVIMAAPDSKTRFNEAVRLLDWGFANFA-------MYAPYAKDFSFG 292 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 +V + + +KE+ + + K+ E T+L +I Sbjct: 293 KV-RVRNGL---KKEVSAVLERDVKLLVKKGDENSIETKTILPKEI 334 >gi|258621965|ref|ZP_05716994.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] gi|258585718|gb|EEW10438.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] Length = 391 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V +++ + S F + A Y L+D ++G V+AE + +PASLTK+MT+ Sbjct: 14 VTLSITLSSTAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 74 YVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDA 133 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 134 CVAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIR 193 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 194 DVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMR 253 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 254 LVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|120597860|ref|YP_962434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sp. W3-18-1] gi|146293967|ref|YP_001184391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens CN-32] gi|120557953|gb|ABM23880.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella sp. W3-18-1] gi|145565657|gb|ABP76592.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens CN-32] Length = 391 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I ++++ P ++ A T Y L+D +G +IAE+ NPASLTK Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISKNA S + G T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY-----------NKTDRKKINYIIKDFYQQ 283 LI+V++G R S LL+ GF + ++I Y K Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETITPYKAGDNFTTQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITVSRGRAKDLKANFELTKQLDAPLKKGETVGRLFFQLDGKDIAQ 360 >gi|107023825|ref|YP_622152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia AU 1054] gi|105894014|gb|ABF77179.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia AU 1054] Length = 529 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 159 ATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 218 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S S + +++ + + +I++S ND A+A+AE + +E Sbjct: 219 ISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 278 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 279 GQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEK 338 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 339 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 398 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 399 EQKESERTQDSMKMLNYGYSAFDSVRL 425 >gi|317048758|ref|YP_004116406.1| beta-lactamase [Pantoea sp. At-9b] gi|316950375|gb|ADU69850.1| Beta-lactamase [Pantoea sp. At-9b] Length = 389 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 159/329 (48%), Gaps = 10/329 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V ++A + PF + + L+D TG ++ PD NPASLTKLMT YV Sbjct: 14 IVWASLAQADDGMPFPLTPPSIDAASWVLMDATTGQILTAGNPDEERNPASLTKLMTGYV 73 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 V + + K +T+ K+A S K G +T+ + + +I+ S ND Sbjct: 74 VDRAIDQHKISRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDKVTVRDLSRGVIIDSGND 133 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+A+ + +++ FV MN+ + LGL+ THF HG+ G +TTARD+A+LS I Sbjct: 134 ACVALADYVAGSQQNFVTMMNSYVQKLGLTHTHFETVHGLDAPGQHTTARDLAVLSRAII 193 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 + P + + K L G N N + L DG+KTG T +GFNI+AS+I G Sbjct: 194 SGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGFNIIASSIVGQH 253 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 LIAVI+G R + + LL G N D ++ + K +N+ P+ + Sbjct: 254 RLIAVIMGGKSSKGREEQARKLLVWG-QNSFDTVQLFHAGKKIGTENVWYGNPHQVD--V 310 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T ++I + + K + ID + + Sbjct: 311 GTTQDIYLSLPRGEVQNVKAKYIIDRKDL 339 >gi|149181665|ref|ZP_01860158.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus sp. SG-1] gi|148850643|gb|EDL64800.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus sp. SG-1] Length = 387 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 39/347 (11%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+ + I+ + ++++ F + AE K L++ +TG V+ + P Sbjct: 1 MRRIISAILMLVLITSAFAPFASAEEKKTELAAGAKSAILIERDTGTVLYDKNSHEKLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ L + + + S+ A+ S + G MT+ L + + Sbjct: 61 ASMTKIMTMILIMEALDKGQIKWEDEVRTSEYAASMGGSQIFLEPGEVMTVKEMLLGISI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND +VA+AE + +E+ FV+ MNN K+LGL T+F N G+ HY++A DMA++ Sbjct: 121 GSANDASVAMAEHIAGSEEGFVEKMNNKVKDLGLKDTNFKNPTGLPASEHYSSAHDMAMM 180 Query: 174 SWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + + + + Y + K NTN V + G DG+KTGFT + + + Sbjct: 181 AKELLK-YQEITKYTGTYESYLREDTDKKFWLVNTNKLVRFYPGVDGLKTGFTNEAKYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 A+A + + +IAV+ G RN + + F + Q L + Sbjct: 240 TATAKKDNMRVIAVVFGEPTPKDRNAEISKMFDYAFSQ-------------YQTQPLFEK 286 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ ++ + K KE + E I+LL K K Sbjct: 287 GASVG-------------KAEISKGKAKEVEAMTNEPISLLAKKGEK 320 >gi|300824757|ref|ZP_07104862.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300920250|ref|ZP_07136696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|301018907|ref|ZP_07183137.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|299882461|gb|EFI90672.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|300412752|gb|EFJ96062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300522744|gb|EFK43813.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|323172598|gb|EFZ58232.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli LT-68] Length = 347 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|319427343|gb|ADV55417.1| Beta-lactamase [Shewanella putrefaciens 200] Length = 391 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ L+I ++++ P ++ A T Y L+D +G +IAE+ NPASLTK Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNPASLTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISKNA S + G T+ + + + +I++S Sbjct: 69 MMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRGIIIQS 128 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDMALLGA 188 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ + K G K N N + + DG+KTG T +G+N+VASA + Sbjct: 189 ALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY-----------NKTDRKKINYIIKDFYQQ 283 LI+V++G R S LL+ GF + ++I Y K Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETITPYKAGDNFTTQQIWYGDKSTVDL 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ +A K+ + L I + Sbjct: 309 GVATDTPITVSRGRAKDLKANFELTKPLDAPLKKGETVGRLFFQLDGKDIAQ 360 >gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1273] Length = 385 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 148/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F +K K + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|229086646|ref|ZP_04218815.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] gi|228696728|gb|EEL49544.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] Length = 386 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 14/323 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 31 AEQASSAIVIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DM+I++ + +P Y ++ K Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269 Query: 260 LSMGFYNKTDRK------KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 L F T +K KI + ++ + V + + + + E ++ Q Sbjct: 270 LDYAFGQYTTKKMYKRGEKIQTVKVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEIIT 329 Query: 314 KDKESHFIDFEKITLLKNKITKK 336 + K I +K L + KK Sbjct: 330 EKKVKAPI--KKGDALGTLVIKK 350 >gi|304559487|gb|ADM42151.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 399 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 96/357 (26%), Positives = 159/357 (44%), Gaps = 22/357 (6%) Query: 1 MRQFLVIIAMAMLSN-IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R+ + ++++++ + Y LLD ++G V+ E D +PASLTK+ Sbjct: 10 IRRLTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKI 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 M +YV+ LK K + + K+A S K G + + + +++ Sbjct: 70 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA++ Sbjct: 130 QSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALI 189 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 S R+ D P + K + N N + + L DG+KTGFT +G N+VASA Sbjct: 190 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVASA 249 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL----SNE 288 G LI+V+LGA R S LL+ GF I + + F Q + +E Sbjct: 250 TDGPMRLISVVLGAPTDRIRFDESKKLLTWGFRFYETVTPI-KVGQPFTTQKVWYGERSE 308 Query: 289 VP---NISEEVCTTQKEIINYN------TQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP + S V + ++ + EA K+ + L I ++ Sbjct: 309 VPLGVDKSAAVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTIDFQLNGKTIEQR 365 >gi|300903877|ref|ZP_07121778.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|301307141|ref|ZP_07213170.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300404135|gb|EFJ87673.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300837656|gb|EFK65416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|315253360|gb|EFU33328.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] Length = 347 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|315646365|ref|ZP_07899483.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] gi|315278008|gb|EFU41328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] Length = 396 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 136/289 (47%), Gaps = 22/289 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAE 44 M++ L+ + + + + S AE N LLD +TG +I E Sbjct: 1 MKKALIAGFLVLFVGLSSTAVPSYAEENSKTGEGSSQEELAPSARSAILLDADTGTIIYE 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 PAS+TK+MT + + + T + S+ A+ S + G MT+ Sbjct: 61 KNSHDKLPPASITKIMTMLLTMEAIDAGRLQWTDKVRTSEYAASMGGSQIFLEPGEEMTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 D LK + + S ND +VA+AE L +E+ FV+ MN+ + LG+ THF+N +G+ HY Sbjct: 121 DEMLKGIAMASGNDASVAMAEKLAGSEQGFVKMMNDKAAELGMKDTHFVNCNGLPAENHY 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTG 219 T+A D+A++S + + Q Y ++ NTN V + GADG+KTG Sbjct: 181 TSAHDIAVMSRELLK-YEQITKYTGSYQDYLRKDSQKPFWLVNTNKLVRFYTGADGLKTG 239 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +T + F + A+A + +AV++GA D TRN + + F T Sbjct: 240 YTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFAQYT 288 >gi|322832952|ref|YP_004212979.1| Beta-lactamase [Rahnella sp. Y9602] gi|321168153|gb|ADW73852.1| Beta-lactamase [Rahnella sp. Y9602] Length = 389 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 15/288 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R + +++ ++ + +IA + + L+D +G V+A PD NP Sbjct: 3 RSVMSVLSCVLMFSAGSAKAIAPLDFPVVPPSIDAASFVLMDYASGDVLAAGNPDERRNP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTKLMT YV+ L KK + +T+ + A S K G +T+ + Sbjct: 63 ASLTKLMTGYVIDRALDHKKITMDDVVTVPQEAWVAGNKSLAGSSLMFLKPGDHVTVRDL 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ +I+ S ND VA+A+ + ++ FV MN ++GL+ THF HG+ G YTT+ Sbjct: 123 IRGIIITSGNDACVAMADYVAGSQDSFVGMMNQYVVSMGLTNTHFETVHGLDAPGQYTTS 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 D+A LS I P+ H + K L N N + L DG+KTG T ++GF Sbjct: 183 YDLAKLSRAIIGGEPEEYHMYAEKSLTYDNITQQNRNGLLWDKNLQVDGLKTGHTESAGF 242 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 NI+ASA QGD+ LIAV++G R + + LL+ GF T ++ N Sbjct: 243 NIIASATQGDRRLIAVVMGGKSSKGREEQARKLLTWGFREYTSKQIFN 290 >gi|295706485|ref|YP_003599560.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319] gi|294804144|gb|ADF41210.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319] Length = 388 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 18/353 (5%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+++ P L+ + N L++ +TG ++ E + Sbjct: 1 MKRTIVKLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT ++ L + K L + S+ A+ S + G MT+++ LK + Sbjct: 61 PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND ++A+AE L +E+KFV MN +K LGL+ T F N G+ HY+TA DMA+ Sbjct: 121 IGSGNDASMAMAEHLAGSEEKFVAKMNQKAKELGLTHTKFQNPTGLPVENHYSTAHDMAM 180 Query: 173 LSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + + + + ++Y ++ K NTN V + G DG+KTGFT + + Sbjct: 181 MGRELLK-YEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQN 284 + A+A +G+ ++AV+ GA RN +L F T + KK + I K + Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTKPLYKKGDVITKIDVNKG 299 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK-EAKDKESHFIDFEKITLLKNKITKK 336 ++V ++ E + + N +K E K E +K + KK Sbjct: 300 SEDQVTAVTSEPISVLLKKGNAAKDVKTEVKMNEKLNAPIQKGDKIGTLTIKK 352 >gi|258625415|ref|ZP_05720309.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258582326|gb|EEW07181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] Length = 391 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V +++ + S F + A Y L+D ++G V+AE + +PASLTK+MT+ Sbjct: 14 VTLSITLSSTTFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 73 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 74 YVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDA 133 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 134 CVAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIR 193 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 194 DVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMR 253 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 254 LVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|261821229|ref|YP_003259335.1| beta-lactamase [Pectobacterium wasabiae WPP163] gi|261605242|gb|ACX87728.1| Beta-lactamase [Pectobacterium wasabiae WPP163] Length = 401 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 PF S + +P + L+D +G V+AE+ D +PASLTK+M +YV+ +K Sbjct: 25 PFTSAEQLPAVPQIDAKAFILMDHASGKVLAESNADERLDPASLTKIMASYVIGQAIKSG 84 Query: 73 KAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 K T +T+ K+A S K G + + K ++++S ND ++A+A+ Sbjct: 85 KIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADY 144 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + ++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L + D P+ Sbjct: 145 VAGSQDAFVSLMNNYAKALNLTNTHFLTVHGLDAAGQYSTARDMALLGQALIRDVPEEYA 204 Query: 187 YFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K + PN N + T L DG+KTG T +G N+VASA +G+ LI+V+LG Sbjct: 205 LHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLG 264 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 A R + S LL+ GF I Sbjct: 265 AQTDAIRFRESEKLLTWGFRFFETVTPI 292 >gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] Length = 385 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|300898616|ref|ZP_07116943.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300956273|ref|ZP_07168579.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|405953|gb|AAA16416.1| yeeC [Escherichia coli] gi|300316896|gb|EFJ66680.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300357712|gb|EFJ73582.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] Length = 347 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|85713001|ref|ZP_01044039.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145] gi|85693170|gb|EAQ31130.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145] Length = 388 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 7/276 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + LV + + S+ Y L+D TG V+AE D PASLT Sbjct: 7 MIKPLVTLVAVFSFGVASAQSLVPNPPQVNAKAYILIDHKTGKVLAEGNADESLPPASLT 66 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ ++ + + +TIS+NA S + G+ +++ + +I+ Sbjct: 67 KMMTSYIIGKEIQAGRISNSDMVTISENAWAKNFPESSKMFIEVGTEVSVSDLNHGIIIS 126 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E F MN ++ +G++++HF N+HG+ Y +ARDM+ L+ Sbjct: 127 SGNDACVAMAEYIAGSEGAFADLMNTYAQEVGMTSSHFANSHGLPDPEQYVSARDMSKLA 186 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + + P+ + K K N N + + DG+KTG T +G+++V SA+ Sbjct: 187 SALINETPEEYKIYSQKSYTYNNIKQYNRNALLWDRSMNVDGIKTGHTSEAGYSLVTSAV 246 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 GD LI+V++G R S LL+ GF Sbjct: 247 DGDTRLISVVIGTGSEQARKIESKKLLNYGFRYYET 282 >gi|323493053|ref|ZP_08098187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] gi|323312701|gb|EGA65831.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] Length = 398 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 156/344 (45%), Gaps = 11/344 (3%) Query: 4 FLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L ++++ + P + Y LLD +TG V+ E D NPASLTKLMTA Sbjct: 21 LLSTLSLSFGAFAAPTIIPDPPALGAKGYILLDYHTGTVLVEKNADKKLNPASLTKLMTA 80 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV +K L + IS+NA S + G+ + L + + LIV+S ND Sbjct: 81 YVAGQEVKSGNISLDDQVRISRNAWAKNFPDSSKMFIEVGTDVELMDLYRGLIVQSGNDA 140 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + +E FV MN+ S+ LGL T + N HG+ G Y+T D+A LS I Sbjct: 141 SVAIAEHVAGSEDAFVSLMNSWSQKLGLENTAYTNPHGLDSQGLYSTPHDIARLSQAIIR 200 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + G N N + L DGMKTG+T +G+++ SA GD Sbjct: 201 DLPDIYPLYSETAFTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATSATNGDMR 260 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISEE 295 L++V++G+ +R S LLS GF K + + + + VP EE Sbjct: 261 LVSVVMGSSSTKSRESESKQLLSYGFRFFDTVSPTKVTDTLAEAKVWMGTVDAVPVGIEE 320 Query: 296 ---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + + +++ A + E+ + + + I K Sbjct: 321 PVLITLPKGDAKKLKAEIEYAGELEAPIEKGQPVGQVIYSIDDK 364 >gi|315127074|ref|YP_004069077.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas sp. SM9913] gi|315015588|gb|ADT68926.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas sp. SM9913] Length = 386 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 133/268 (49%), Gaps = 4/268 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ + A+ S + Y L+D TG VIAE D PASLTK+MT+YV+ Sbjct: 15 LVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVI 74 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + + T +T+S+ A S + G +++D+ +I++S ND VA Sbjct: 75 GTEINAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQVSVDDLNHGIIIQSGNDACVA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN ++ +G++ THF+N+HG+ HYTT RDMA L + D P Sbjct: 135 MAEHIAGSESAFADLMNAHAEKIGMTNTHFVNSHGLDTDAHYTTPRDMATLGAALIRDVP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 ++ K G K N N + L DG+KTG T +G+++V SA + D LIA Sbjct: 195 DEYALYKQKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIA 254 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTD 269 V++G R S LL+ GF Sbjct: 255 VVMGTSSERARKVESKKLLNYGFRFFET 282 >gi|15838821|ref|NP_299509.1| penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c] gi|9107379|gb|AAF85029.1|AE004035_8 penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c] Length = 396 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 163/367 (44%), Gaps = 32/367 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44 M+ +A+ M + + + + ++D +G V+A Sbjct: 1 MKFLFATVAIFMCAVSSAVAQVPQPVPTKAPAIPIPKAPAPAVAKAWVVMDFASGQVLAG 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKG 99 PASLTK+MT+YV+ + +K K + +++NA S S F Sbjct: 61 ENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVN 120 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ +HF++A G+ Sbjct: 121 KTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLS 180 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219 GHY++A DMA+L + D P+ Y ++K L + G K N N + DG+KTG Sbjct: 181 AEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTG 240 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 241 HTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTLYEPGKVV 300 Query: 280 FYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKD-----KESHFIDFEKITL 328 Q+ +V + V + + ++ ++ K + K+TL Sbjct: 301 IKQKIWKGQVSEVQLGVARPLFVTVQRGRYNDLKPSIEVPRNLEAPIKPGQSVGKVKVTL 360 Query: 329 LKNKITK 335 + + Sbjct: 361 DGKVVAQ 367 >gi|260912849|ref|ZP_05919335.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC 43325] gi|260633227|gb|EEX51392.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC 43325] Length = 395 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 156/362 (43%), Gaps = 28/362 (7%) Query: 2 RQFLVIIAMAMLSNIF--PFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHP 50 R+ + +A+L+ F P + A+ Y L+D N+G V+A PD Sbjct: 3 RKIVQNTQIALLAGAFALPINAFAQDVDYGITAPQLNAQTYILMDYNSGAVLASLNPDQR 62 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 PASLTK+MT+YVV LK+ K +TI ++A S +++ + Sbjct: 63 QYPASLTKMMTSYVVGDALKQGKINNNDMVTIGESAWGKNFPGSSKMFLNLNQQVSVSDL 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 + +I+ S ND +VAIAE + + FV+ MN + GL THF + HG+ Y+++ Sbjct: 123 NRGVIIVSGNDASVAIAEHVSGSVPAFVEAMNKYVQQFGLKNTHFTSVHGLDDDNQYSSS 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMAI+ + D P+ + K K N N + + DG+KTG T +G+ Sbjct: 183 RDMAIIGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLLWDKTIQVDGIKTGHTDKAGY 242 Query: 227 NIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 N+V+SA + LI+V++G R S LL GF N K + Q Sbjct: 243 NLVSSATNSNNMRLISVVMGVPTIKGREVESKKLLQWGFANFETFKTLEAGKAISEQSVY 302 Query: 286 SNEVPNISEEVC------------TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 ++ +++ V T K +T+ +A + + L I Sbjct: 303 YGDISDVALGVLEDSFITVPKGRNTDLKARYELDTKYLQAPLAKGQVVGKVVYQLDGKDI 362 Query: 334 TK 335 K Sbjct: 363 AK 364 >gi|170728041|ref|YP_001762067.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC 51908] gi|169813388|gb|ACA87972.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC 51908] Length = 390 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 155/352 (44%), Gaps = 17/352 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ ++ ++A + A T + L+D NTG VIAE NPASLTK Sbjct: 8 LKSLILATSLASSFVFAAPVVTPNAPTVAAKAFVLMDYNTGQVIAEENAYESLNPASLTK 67 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YV+ +K +TISK A S + G +T+D+ +I++S Sbjct: 68 MMTSYVIGHEIKVGNISPNDQVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNHGIIIQS 127 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMAIL Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSENHKTTAYDMAILGA 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P+ ++ K G K N N + + DG+KTG T +G+N+V SA + Sbjct: 188 ALIRDVPEEYVLYKKKSFTYNGIKQYNRNGLLWDKSMHVDGIKTGHTSGAGYNLVTSATK 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQ 283 L+AV++G R S +L+ GF +KI Y K+ Sbjct: 248 DGMRLVAVVMGTKSEAARKAESKKILNYGFRFFETITPYKAGDSFVTQKIWYGDKESVDL 307 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + P + T+ A + + L I + Sbjct: 308 GVTTDTPITINRGQAKNLKANFELTKELTAPLAKGETVGRIYFQLNGKDIAQ 359 >gi|226331025|ref|ZP_03806543.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198] gi|225201820|gb|EEG84174.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198] Length = 367 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + + Y L+D N+G V+AE D +PASLTK+MT+YV+ ++ K + + I Sbjct: 6 PSIEAESYILIDYNSGKVLAEMNADVRRDPASLTKMMTSYVIGQSIRAGKISNSDIVPIG 65 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + A S K G +T+ + + ++S ND VA+A + ++ FV Sbjct: 66 EEAWATGNPIFRGSSLMFLKPGDQVTVAQLTRGINLQSGNDACVAMASYVAGSQDTFVAM 125 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ K LGL T F HG+ G Y+TARDMA++ + D P ++ K Sbjct: 126 MNDYVKRLGLQNTQFQTVHGLDAPGQYSTARDMALIGAALIRDVPDEYAIYKEKEYTYNN 185 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA +G+ LI+ ++G R+ S Sbjct: 186 IRQTNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGHSPKGRDVES 245 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF K + + K+F + + Sbjct: 246 KKLLTWGFRFFETVKPL-QVGKEFAAEPI 273 >gi|92112285|ref|YP_572213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] gi|91795375|gb|ABE57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens DSM 3043] Length = 413 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 100/287 (34%), Positives = 159/287 (55%), Gaps = 3/287 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKL 59 R +I + + + LS+AE P Y ++DT G V+ + D P PASLTK+ Sbjct: 10 RLLPALILLVVFAIALCTLSVAEAAPNPRYASIVIDTENGAVLHADNADAPRYPASLTKM 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y++F +++ L + + +S+ A+ PPS G T+ +++A+ +LIVKSAND+ Sbjct: 70 MTLYLLFEAIEDDTLSLESRLPVSQYAAAKPPSKMGVTPGETVKVEDAINILIVKSANDV 129 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A +AE L +E F M + ++ LG+ T F NA G+ G TTARDMAIL+ R+ Sbjct: 130 AAVVAEGLAGSESVFAGQMTDKARALGMMDTTFRNASGLPDAGQVTTARDMAILALRLMQ 189 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP Y YF +GK+Y N + ++ GADG+KTG+ ASGFN+ SA+ + + Sbjct: 190 DFPGYYPYFGKTQFTWQGKRYQGHNRLLDSYAGADGLKTGYIRASGFNVATSAVHDGRRI 249 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNL 285 ++V++G +R+ LL GF + +++ + D Y + L Sbjct: 250 LSVVMGGFTAQSRDAHMRELLDSGFARVASLAQGDWVAQADIYGERL 296 >gi|325844944|ref|ZP_08168309.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] gi|325488994|gb|EGC91383.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1] Length = 389 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 9/286 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R+ L+ + + I ++L L++ TG ++ E P PAS+ Sbjct: 3 IRKVLISLLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPASM 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+M+ Y++ + I +S+NA+ Y S K G M + + K + + SA Sbjct: 63 TKMMSMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIASA 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+AE + +E+ FV+ MN +K LG++ T F N G+ GH TT DM+I++ Sbjct: 123 NDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIARH 182 Query: 177 IKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + D+P+ + + I+ NTN + G DG+KTGFT +G+ + A+ Sbjct: 183 LLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNRLIKYVDGVDGLKTGFTQEAGYCLTAT 242 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 A + +IAV++GA RN+ L+ + K+ + Sbjct: 243 AQRNGMRVIAVVMGASKSEIRNQEVTRLIEYAYEQYELVPKLESGL 288 >gi|116748745|ref|YP_845432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobacter fumaroxidans MPOB] gi|116697809|gb|ABK16997.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Syntrophobacter fumaroxidans MPOB] Length = 422 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 7/262 (2%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ +TG ++ E D PAS TK+ + Y+VF L++ + L I IS+ A Sbjct: 37 AKSAILMEVSTGAILFEQNADEVIEPASFTKIASLYLVFEALRQGRIHLNDEIWISEAAW 96 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S G+ + L+ LK + V S ND VA AE + + + FV+ MN ++ LG+ Sbjct: 97 RTGGSKMFVGVGTKVPLEELLKGIAVVSGNDACVAAAEHVSGSAETFVEAMNRKTRELGM 156 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 + + F+N HG+ G TTARDMAIL FP+ + Y ++ N N + Sbjct: 157 THSRFLNPHGLPVEGQTTTARDMAILDSAYLRQFPESLQYHSMREYTYNNIVQYNRNHLL 216 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 DG+KTG+ A+G+++ A+A + L+AV++GA R + + LL+ GF Sbjct: 217 LKDPSVDGLKTGYVAAAGYHLAATAKRDGMRLLAVVMGAGTPAVREREALKLLNYGFRYY 276 Query: 268 TDRKKINYIIKDFYQQNLSNEV 289 T +++ F Q V Sbjct: 277 T-------LVQPFPQGQPVTTV 291 >gi|315296383|gb|EFU55683.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] Length = 347 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI V T +E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENI---VLGTVQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|269139610|ref|YP_003296311.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|267985272|gb|ACY85101.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] Length = 411 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 96/357 (26%), Positives = 159/357 (44%), Gaps = 22/357 (6%) Query: 1 MRQFLVIIAMAMLSN-IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R+ + ++++++ + Y LLD ++G V+ E D +PASLTK+ Sbjct: 22 IRRLTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKI 81 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 M +YV+ LK K + + K+A S K G + + + +++ Sbjct: 82 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 141 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA++ Sbjct: 142 QSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALI 201 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 S R+ D P + K + N N + + L DG+KTGFT +G N+VASA Sbjct: 202 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVASA 261 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL----SNE 288 G LI+V+LGA R S LL+ GF I + + F Q + +E Sbjct: 262 TDGPMRLISVVLGAPTDRIRFDESKKLLTWGFRFYETVTPI-KVGQPFTTQKVWYGERSE 320 Query: 289 VP---NISEEVCTTQKEIINYN------TQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP + S V + ++ + EA K+ + L I ++ Sbjct: 321 VPLGVDKSAAVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTIDFQLNGKTIEQR 377 >gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] Length = 377 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 22 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASE 81 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 82 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 141 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 142 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 200 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 201 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 260 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 261 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 320 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 321 EKKVKAPIKKGDALGTLVIKK 341 >gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 385 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F +K K + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + K+ Sbjct: 329 EKKVKAPIKKGDALGTLVIKR 349 >gi|290476200|ref|YP_003469100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus bovienii SS-2004] gi|289175533|emb|CBJ82336.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Xenorhabdus bovienii SS-2004] Length = 402 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G ++AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 41 PQTDAEAYILIDYNSGKILAEKNSDIRRDPASLTKMMTSYVIGQAIKSGKIGPNDTVTVG 100 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G +++ + + ++S ND VA+A+ + ++ FV Sbjct: 101 KDAWATGNPVFKGSSLMFLKPGDQVSVAMLSRGINLQSGNDACVAMADYVAGSQDAFVNL 160 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN +NLGL THF HG+ G Y++A DMA++ + D P ++ K Sbjct: 161 MNKYVQNLGLQNTHFETVHGLDAAGQYSSAHDMALIGQALIRDVPDEYAIYKEKEFTYNN 220 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 PN N + L DG+KTG T +G+N+V+SA + + LI+V++G+ R S Sbjct: 221 IHQPNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATESNMRLISVVMGSPTFKGRETDS 280 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 281 KKLLTWGFRFFETVSPL-QVGKEFASEPV 308 >gi|317047508|ref|YP_004115156.1| beta-lactamase [Pantoea sp. At-9b] gi|316949125|gb|ADU68600.1| Beta-lactamase [Pantoea sp. At-9b] Length = 401 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 100/337 (29%), Positives = 156/337 (46%), Gaps = 35/337 (10%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D N+G V+AE D +PASLTK+MT+YV+ LK K +TI ++A Sbjct: 39 DAKAWVLMDYNSGKVLAEANADQRLDPASLTKMMTSYVIGQALKAGKIHDDDMVTIGQDA 98 Query: 87 SEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 S K G + + K ++++S ND +A+A+ + ++ F+ MNN Sbjct: 99 WATGNPKLKGSSLMFLKPGDRIPVAELNKGIVIQSGNDACIAMADYVAGSQDSFIGLMNN 158 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K GL THFM HG+ G Y+TARDMAI+ R+ +D P+ + K K Sbjct: 159 YAKAFGLQNTHFMTVHGLDADGQYSTARDMAIIGQRLISDVPEEYALNKQKEFTFNNIKQ 218 Query: 201 PNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + + L DG+KTG T +G N+V+SA GD LI+V+LGA R + S L Sbjct: 219 MNRNRLLWSSNLKVDGIKTGHTSGAGNNLVSSATDGDMRLISVVLGAETDALRFRESEKL 278 Query: 260 LSMGFYNKT-------------------DRKKINY-IIKDFYQQNLSNEVPNISEEVCTT 299 L+ GF DRK++N + KD ++ N+ T Sbjct: 279 LTWGFRFFDTVTPIKADKPFAQQRVWFGDRKQVNLGVAKDASVTIPKGQMNNLKASYTLT 338 Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++ EA K++ + L + ++ Sbjct: 339 SPQL--------EAPLKKNQVVGTIDFQLDGKSVEQR 367 >gi|238795791|ref|ZP_04639304.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] gi|238720254|gb|EEQ12057.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] Length = 424 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 135/264 (51%), Gaps = 8/264 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A Sbjct: 64 KAYVLMDFNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWA 123 Query: 89 YP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S K G + L + K ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 124 TGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 183 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGL+ THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 184 KALGLTNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNNIRQIN 243 Query: 203 TNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DGMKTGFT +G N+VASA G LI+V+LGA R S LL+ Sbjct: 244 RNRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 303 Query: 262 MGFYNKTDRKKINYIIKDFYQQNL 285 GF I K F Q + Sbjct: 304 WGFRFYETVVPI-KATKPFVTQKV 326 >gi|83945500|ref|ZP_00957847.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii HTCC2633] gi|83851076|gb|EAP88934.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii HTCC2633] Length = 418 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 163/320 (50%), Gaps = 1/320 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I+A+ + ++F S AE ++ + D TG V+ D PASLTK+MT Y++F Sbjct: 5 ILALLCVLSVFALTSRAEASERYAAFVADMETGEVLHSRRADAERYPASLTKMMTLYMLF 64 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L+ + L IT S A+ P S + G T+ +++A++ LI++SAND+AVA+AE Sbjct: 65 EALERGEVSLDDAITASAEAASRPSSKLGLRAGQTIRVEDAIRALIIQSANDVAVAVAEH 124 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 L E +F M ++ LG++ T F NA G+ +TTARD+A L++ + DFPQY H Sbjct: 125 LQDDEARFAAVMTLRARELGMTNTVFRNASGLPDAAQHTTARDVARLAYALHEDFPQYYH 184 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 YF G + N N VG G DG+KTG+ ASGFN+ ASA + +IAV++G Sbjct: 185 YFGETRFRWNGVTHRNHNSLVGNQAGVDGLKTGYIRASGFNLAASAERDGHRIIAVVMGG 244 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNEVPNISEEVCTTQKEIIN 305 + + R+ + L+ F R + + + + N E ++ E+ T + Sbjct: 245 VSASVRDAHARELIEAAFSALNARSEGRMLAAMNTPRLNPVREQEILTAELTTLPAQTAQ 304 Query: 306 YNTQMKEAKDKESHFIDFEK 325 + A E +D Sbjct: 305 GSAPGAPAAQVELADLDAAP 324 >gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] Length = 385 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|294338753|emb|CAZ87085.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas sp. 3As] Length = 393 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/264 (32%), Positives = 137/264 (51%), Gaps = 10/264 (3%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 AML+ + P + ++D +G ++AE+ PASLTKLMTAY+ F LK Sbjct: 31 AMLATVPP-----PKLDARAWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALK 85 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 E L +T SK A + S +++++ L +IV+S ND A+ +A+++ + Sbjct: 86 EGTIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGS 145 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQ 189 FV MN ++ GL THFM+ G+ GH+TTA D++I++ I DFP Y YF+ Sbjct: 146 VSAFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFK 205 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILG 245 +K PN + T DGMKTG+T +G+ ++ SA++ G + L+ V++G Sbjct: 206 VKEFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSALRQFPNGPRRLLTVVMG 265 Query: 246 ALDRNTRNKVSASLLSMGFYNKTD 269 R + S LL+ + N D Sbjct: 266 TPTERARGEESQVLLNWAYQNFDD 289 >gi|126739529|ref|ZP_01755221.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. SK209-2-6] gi|126719175|gb|EBA15885.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp. SK209-2-6] Length = 493 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 106/260 (40%), Positives = 147/260 (56%), Gaps = 2/260 (0%) Query: 27 KLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 PY +LD TG V+ D +PASLTK+MT Y+ F ++ + L T + ISKN Sbjct: 2 AAPYAAMVLDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIRNGEISLDTKVRISKN 61 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ PPS + G + L ++ VKSAND A AI E+L +E F + M T+K L Sbjct: 62 AAAEPPSKLGLRSGQRIALRYLIRAAAVKSANDAATAIGEALSGSEAAFARRMTRTAKAL 121 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 G+S T F NAHG+ + GH +TARDM L I D+P+Y + F K + K PNTN Sbjct: 122 GMSRTSFKNAHGLTESGHMSTARDMTTLGRHILYDYPEYYNLFSRKTADAGVKTVPNTNR 181 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A LL +GF Sbjct: 182 RLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSTSRNAKVAELLDLGF 241 Query: 265 YNKTDRKKINYIIKDFYQQN 284 R K+ + YQ N Sbjct: 242 RRAPSRAKLRKPGRPAYQGN 261 >gi|197284564|ref|YP_002150436.1| penicillin-binding protein [Proteus mirabilis HI4320] gi|194682051|emb|CAR41559.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase) [Proteus mirabilis HI4320] Length = 400 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 10/292 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L+II+ + P + + Y L+D N+G ++A P+ +PASLTK+M++Y Sbjct: 18 LLLIISSPTFAVNNP---VPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSY 74 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAN 117 VV +KE + + + +NA S K G + + + + ++++S N Sbjct: 75 VVGQAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGN 134 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D ++A+AE + +++ FV MN + NLGL THF HG+ G YTTA+DMA+L+ + Sbjct: 135 DASIALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAM 194 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K + PN N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 195 IRDVPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGN 254 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 LIAV+LGA R S LL GF + + Q+ + Sbjct: 255 MRLIAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGD 306 >gi|288549826|ref|ZP_05968319.2| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] gi|288317555|gb|EFC56493.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 347 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 137/297 (46%), Gaps = 27/297 (9%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--- 90 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKGNPV 60 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K G +T+ + + LIV S ND VA+A+ + + +FV MN+ + L L Sbjct: 61 FDGSSLMFLKPGDRVTVRDLSRGLIVDSGNDACVALADHVAGGQPQFVNMMNDYVQKLNL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 RDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREDQARKLLHWGQQN 240 Query: 267 KTDRKKINYIIK--------------------DFYQQNLSNEVPNISEEVCTTQKEI 303 + ++ K DF+ EVPNI + +KE+ Sbjct: 241 FDTVQILHNGKKVGTERIWYGDKEQVELGTDQDFWLALPKTEVPNIKAKYVLDKKEL 297 >gi|227356744|ref|ZP_03841129.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906] gi|227163034|gb|EEI47969.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906] Length = 400 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 10/292 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L+II+ + P + + Y L+D N+G ++A P+ +PASLTK+M++Y Sbjct: 18 LLLIISSPTFAVNNP---VPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSY 74 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAN 117 VV +KE + + + +NA S K G + + + + ++++S N Sbjct: 75 VVGQAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGN 134 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D ++A+AE + +++ FV MN + NLGL THF HG+ G YTTA+DMA+L+ + Sbjct: 135 DASIALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAM 194 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K + PN N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 195 IRDVPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGN 254 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 LIAV+LGA R S LL GF + + Q+ + Sbjct: 255 MRLIAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGD 306 >gi|227114414|ref|ZP_03828070.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327371|ref|ZP_03831395.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 403 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 141/294 (47%), Gaps = 20/294 (6%) Query: 11 AMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 A+L+ + AE Y L+D N+G V+AE D +PASLTK Sbjct: 17 ALLAISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMNADTRRDPASLTK 76 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLI 112 +MT+YV+ +K K +T+ K+A S K G + + + +I Sbjct: 77 MMTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGII 136 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ARDMA+ Sbjct: 137 LQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLKNTNFETVHGLDAPGQFSSARDMAL 196 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 + + D P+ ++ K + PN N + + L DG+KTG T ++GFN+VAS Sbjct: 197 IGQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVAS 256 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 A +G LI+ +LG + R S LL+ GF + K+F + + Sbjct: 257 ATEGQMRLISAVLGGRNAKGRESESKKLLTWGFRFFETVAPLKAG-KEFASEPV 309 >gi|294501138|ref|YP_003564838.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551] gi|294351075|gb|ADE71404.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551] Length = 388 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 18/353 (5%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWN 52 M++ L+++ P L+ + N L++ +TG ++ E + Sbjct: 1 MKRTIVKLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT ++ L + K L + S+ A+ S + G MT+++ LK + Sbjct: 61 PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND ++A+AE L +E+KFV MN +K LGL+ T F N G+ HY+TA DMA+ Sbjct: 121 IGSGNDASMAMAEYLAGSEEKFVAKMNQKAKELGLTHTQFQNPTGLPVENHYSTAHDMAM 180 Query: 173 LSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + + + + ++Y ++ K NTN V + G DG+KTGFT + + Sbjct: 181 MGRELLK-YEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQN 284 + A+A +G+ ++AV+ GA RN +L F T + KK + I K + Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTKPLYKKGDVITKIDVNKG 299 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK-EAKDKESHFIDFEKITLLKNKITKK 336 ++V ++ E + + N +K E K E +K + KK Sbjct: 300 SEDQVTAVTSEPISVLLKKGNAAKDVKTEVKMNEKLNAPIQKGDKIGTLTIKK 352 >gi|83952372|ref|ZP_00961103.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius nubinhibens ISM] gi|83836045|gb|EAP75343.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius nubinhibens ISM] Length = 491 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 97/263 (36%), Positives = 150/263 (57%), Gaps = 3/263 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G V+ D +PASLTK+MT YVVF ++ + L ITIS++A+ PP Sbjct: 17 MVIDARSGEVLHSRNADSRLHPASLTKMMTLYVVFEAVENGEISLDDTITISRHAASEPP 76 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + G + L ++ VKSAND A A+ E++ +E +F + M T+K LG++ T Sbjct: 77 SKLGLRAGQKIKLRYLIRAAAVKSANDAATALGEAIEGSEARFARRMTRTAKALGMTRTT 136 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTF 210 F NAHG+ + GH +TARDM L + DFP+Y + F + + NTN + + Sbjct: 137 FKNAHGLTEDGHLSTARDMTTLGRHLFYDFPEYYNLFSRVETDAGVRSVSNTNRRLLSAY 196 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADG+KTG+T A+GFN+VASA +G++ +IA + G ++RN A LL +GF R Sbjct: 197 KGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSHSRNAEVAELLDLGFARAPRR 256 Query: 271 KKINYIIKDFYQQNL--SNEVPN 291 +N + Y + S++ P+ Sbjct: 257 VAVNKPARPPYYGKIGGSDDAPD 279 >gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] Length = 385 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 10/320 (3%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++ Sbjct: 31 EQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEH 90 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+L Sbjct: 91 AASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDL 150 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKY 200 GL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 151 GLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWL 209 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLL 269 Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316 F +K K Q + + S+ V K+ N + +E + Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329 Query: 317 ESHFIDFEKITLLKNKITKK 336 + +K L + KK Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349 >gi|293375491|ref|ZP_06621770.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] gi|292645891|gb|EFF63922.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter sanguinis PC909] Length = 389 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 9/286 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R+ L+ + + I ++L L++ TG ++ E P PAS+ Sbjct: 3 IRKVLISLLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPASM 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+M+ Y++ + I +S+NA+ Y S K G M + + K + + SA Sbjct: 63 TKMMSMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIASA 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+AE + +E+ FV+ MN +K LG++ T F N G+ GH TT DM+I++ Sbjct: 123 NDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIARH 182 Query: 177 IKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + D+P+ + + I+ NTN + G DG+KTGFT +G+ + A+ Sbjct: 183 LLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNKLIKYVDGVDGLKTGFTQEAGYCLTAT 242 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 A + +IAV++GA RN+ L+ + K+ + Sbjct: 243 AQRNGMRVIAVVMGASKSEIRNQEVTRLIEYAYEQYELVPKLESGL 288 >gi|109897877|ref|YP_661132.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas atlantica T6c] gi|109700158|gb|ABG40078.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Pseudoalteromonas atlantica T6c] Length = 390 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 4/256 (1%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ + A + + L+D TG VIAE D PASLTK+MT+YV+ + Sbjct: 24 ASAAVIIPDAPSVSAKGFILVDFQTGKVIAEQNSDIQIPPASLTKMMTSYVIGKEIANGN 83 Query: 74 AMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 T +TIS+NA S + G+ +++ + + +IV+S ND VA+AE + + Sbjct: 84 IKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVGDLNRGIIVQSGNDACVAMAEHIAGS 143 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E F MN ++ LG+++THF+N+HG+ HYTT RDMA L+ + TD P + Sbjct: 144 EDAFASMMNLHAEKLGMTSTHFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYSE 203 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K K N N + L DG+KTG T +G+++V+SA QGD LIAV++GA Sbjct: 204 KEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADSE 263 Query: 250 NTRNKVSASLLSMGFY 265 R + LL GF Sbjct: 264 RARKVENKKLLKYGFR 279 >gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 385 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|281600032|gb|ADA73016.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella flexneri 2002017] Length = 427 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 332 Query: 285 L 285 + Sbjct: 333 V 333 >gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 385 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|154253549|ref|YP_001414373.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] gi|154157499|gb|ABS64716.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] Length = 384 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 12/306 (3%) Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M +F+ +++A+ + P + A Y L+D +G ++ D +PAS+ Sbjct: 1 MNRFISATAFALSLALTAVALPRGAFAFETAAEYAVLMDYESGSILWGKNADEQMHPASM 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLL 111 +KLMT ++F +++ L +S+NA S + + + L+ + Sbjct: 61 SKLMTLDMLFGAIRDGSVSLDDEFKVSENAWRKGGAASGSSTMFADLNTVVPVHAILRGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND +A AE+L +E F + + K +GL+ ++F N+ G H TA D+A Sbjct: 121 IVQSGNDACIATAEALSGSESAFAEALTERGKAIGLTNSNFTNSTGWPDEDHLMTAHDLA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +L+ I +FP++ F+ G K N N A+ DG+KTG T ASG+ +VAS Sbjct: 181 VLARHIIMEFPEFYPIFKETDFTWNGIKQGNRNPALYLDPSVDGLKTGHTEASGYGLVAS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288 A +GDQ LI V+ G R S LL GF + K + Q E Sbjct: 241 AKRGDQRLILVLNGLPSERARADESVRLLDWGFRSFKHYKLFTAGTPVENAPVWQGTYGE 300 Query: 289 VPNISE 294 VP +S+ Sbjct: 301 VPLVSQ 306 >gi|260432451|ref|ZP_05786422.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416279|gb|EEX09538.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 475 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 151/297 (50%), Gaps = 1/297 (0%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + + + I + ++D TG V+ D +PASLTK+MT Y+ F Sbjct: 13 LFLIAMIWIAAVAATQALAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFE 72 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 ++ + L TP+TI+K A+ PPS + G + ++ VKSAND A AI +L Sbjct: 73 AVRNGEITLDTPVTITKAAAAEPPSKLGLRAGQKIAFRYLIRAAAVKSANDAATAIGIAL 132 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E F + M T+K +G+S T F NAHG+ + GH +TARDM L + D+P+Y + Sbjct: 133 SGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTEPGHLSTARDMTTLGRHLLYDYPEYYNL 192 Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 F + K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + G Sbjct: 193 FSRQSTYAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGG 252 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 RN A LL +GF R I + Y N ++ + Q+ + Sbjct: 253 KSSAWRNAKVAELLDLGFRRAPSRAPIRKPSRPAYAGNAGLGDTQVARAIGAPQQSL 309 >gi|331661996|ref|ZP_08362919.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143] gi|315616449|gb|EFU97066.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431] gi|331060418|gb|EGI32382.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143] Length = 394 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 1 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 61 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 121 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 181 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 240 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 241 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 299 Query: 285 L 285 + Sbjct: 300 V 300 >gi|226311980|ref|YP_002771874.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] gi|226094928|dbj|BAH43370.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] Length = 394 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 167/347 (48%), Gaps = 24/347 (6%) Query: 6 VIIAMAMLSNIFPFLSIAE------------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 + + M IF ++IA+ + +++ +TG V+ E + P Sbjct: 7 LALCFLMCFTIFSPMAIAKEKAGQQKSDNHFAPQASSAVMIEADTGTVLYEKNANEKMPP 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ ++ + LT + S+ A+ S + G MT+++ LK + + Sbjct: 67 ASITKVMTMLLIMEAVERGELKLTDKVRTSERAASMGGSQIFLQPGEEMTVEDMLKGIAI 126 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE L TE+ FV MN ++ LG+ THF+N++G+ HY++A D+AI+ Sbjct: 127 ASGNDASVAMAEHLAGTEESFVTRMNERAQQLGMKNTHFVNSNGLPAANHYSSAGDIAIM 186 Query: 174 SWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 S + ++ +Q ++ NTN V + G DG+KTG+T + + + Sbjct: 187 SRELLKHEGITKFTGTYQDYLRKDTESPFWLVNTNKLVRFYEGVDGLKTGYTGEAKYCLT 246 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQ 283 A+A + + +IAV+LG D TRN +++ + F + + + ++ D Q+ Sbjct: 247 ATAKRNNMRVIAVVLGEPDVKTRNNEVSTMFNYAFTHFKVTPMYKKGEPVRTLVVDKGQK 306 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + N V + + + E + +T KE KE+ K ++ Sbjct: 307 SQINAVTPHAVSLLMKKGE--SADTFQKEIVIKEAVHAPIAKNQVIG 351 >gi|83593039|ref|YP_426791.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] gi|83575953|gb|ABC22504.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] Length = 388 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 7/273 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + A L P + A K + ++D +T V+ + D P P+S++KLMT Sbjct: 6 RHLTPFVLAAGLLTAMP--AQAFETKARHALVIDLDTDTVLLDKDADVPMPPSSMSKLMT 63 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSA 116 AY++F LK L ++S+NA S G+ + + + ++ +I++S Sbjct: 64 AYMLFERLKSGSLSLDDTFSVSENAWRKGGAASGGSTMFLNPGAQVKVHDLMRGIIIQSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND V +AE+L E F MN +K LGL+ +HF+NA G+ HY TA D+ +L+ Sbjct: 124 NDACVVVAENLAGDEATFAAAMNRRAKELGLTNSHFVNATGLPDPEHYMTAHDLVLLAEH 183 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I DFP++ + G N N + +GADG+KTG T +GF + ASA+Q Sbjct: 184 IIRDFPEFYEIYGETKFTYNGIVQHNRNPLLYMNMGADGLKTGHTNIAGFGLTASAVQDG 243 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + L+ VI G R++ + L+S GF N Sbjct: 244 RRLLMVINGLQSNKERSEEAERLMSWGFRNFET 276 >gi|89895051|ref|YP_518538.1| hypothetical protein DSY2305 [Desulfitobacterium hafniense Y51] gi|219669462|ref|YP_002459897.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|89334499|dbj|BAE84094.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539722|gb|ACL21461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 380 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 15/345 (4%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ ++ +A+ + + P + + L+D +G ++ E PAS Sbjct: 1 MRKTLSWVFALALFIGNLAVPHQAYGAVLETEAASAILMDAKSGQILFEKEIHKELPPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TKLMT V ++ + LT +T S+ AS S + G T +L+ L + V S Sbjct: 61 VTKLMTLLVAAEAVESGRVSLTDKVTASEGASSLGGSQIYLEPGETFSLEEMLISIAVGS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+ E + T + FV+ MN +K +G + THF+NA+G+ GHYT+A D+A++ Sbjct: 121 ANDACYAVGEHISGTHEAFVEEMNKKAKEIGANHTHFVNAYGLPAQGHYTSAYDLALMGR 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 +P +K +++G K+ NTN + + GADG KTG+T + + + ++ Sbjct: 181 EALK-YPLVRKLTNMKEYDLRGGKFKLWNTNKLLWWYEGADGFKTGWTSEANYCLASTVE 239 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVP 290 + LIAV++G S L + GF N ++ K ++ + ++ Sbjct: 240 RDGLRLIAVVMGVPQVRGHFTESMKLYNYGFANYAYKEYAPVGQKQGVIKVRKGMEEDLV 299 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++E+ + E K D E K+ + Sbjct: 300 AVTEKALGVTVPKGSDKNIWAETKLNP----DVEAPVKAGQKVGE 340 >gi|295695956|ref|YP_003589194.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295411558|gb|ADG06050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 425 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D TG V+ E PAS+TK+MT + L+ + L+ + S+ A+ Sbjct: 74 SAVLMDAATGTVLMEKNSHEKLPPASITKIMTMLLTVEALERGQVQLSDRVRTSERAASM 133 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G MTLD+ +K + V SAND +VA+AE L +E +FV MN ++ LG+ Sbjct: 134 GGSQIFLEPGEEMTLDDMMKGIAVASANDASVAVAEYLAGSEAEFVSLMNRRAEELGMRD 193 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTN 204 THF+N +G+ GHYT+A D+AI+S + PQ + + + ++ NTN Sbjct: 194 THFVNCNGLPAEGHYTSAYDIAIMSRELLK-HPQVLRWTSLYEDYLRKNTDRPFWLVNTN 252 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + G DG+KTGFT ++ + + A+A +GD +IAV++G RN +L F Sbjct: 253 KLVRFYPGVDGLKTGFTESARYCLSATAKKGDFRVIAVVMGEPTSKQRNAEVTQMLDWAF 312 Query: 265 YNKTDRKK 272 K Sbjct: 313 GQYQFVKL 320 >gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 385 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|253688070|ref|YP_003017260.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754648|gb|ACT12724.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 401 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 12/268 (4%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 PF + +P + L+D ++G V+AE+ D +PASLTK+M +YV+ +K Sbjct: 25 PFTYAEQMPAVPQIDAKAFILMDYHSGKVLAESNADERLDPASLTKIMASYVIGQAIKSG 84 Query: 73 KAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 K T +T+ K+A S K G + + K ++++S ND ++A+A+ Sbjct: 85 KISPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADY 144 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + ++ FV MNN K L L+ THF+ HG+ G Y+TARDMA+L + D P+ Sbjct: 145 VAGSQDAFVSLMNNYVKALNLTNTHFLTVHGLDATGQYSTARDMALLGQALIRDVPEEYA 204 Query: 187 YFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + K + PN N + T L DG+KTG T +G N+VASA +G+ LI+V+LG Sbjct: 205 LHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLG 264 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI 273 A R + S LL+ GF I Sbjct: 265 AQTDAIRFRESEKLLTWGFRFFETVTPI 292 >gi|159043222|ref|YP_001532016.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12] gi|157910982|gb|ABV92415.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 6/283 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + I+ + + I S PY ++D TG V+ D +PASLTK+MT Sbjct: 10 RIIAIVCVCLGMQI----SAQPVQAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F ++ + L T + ISK A+ PPS + G + L ++ V+SAND A Sbjct: 66 LYIAFEAVRMGEIGLDTKVRISKKAAAEPPSKLGLRPGQQIALRYLIRASAVRSANDAAT 125 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E++ +E F + MN T+K LG+++T F NAHG+ + GH +TARDM L + D+ Sbjct: 126 AIGEAISGSEAAFARRMNRTAKALGMNSTTFKNAHGLTESGHLSTARDMTTLGRHLFYDY 185 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+Y + F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +I Sbjct: 186 PEYYNLFSRRSTDTTMGTVANTNRRLLNAYRGADGIKTGYTRAAGFNLVASAERGQERII 245 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 A + G TRN+ A LL +GF + Y + Sbjct: 246 ATVFGGRSSATRNQRVAELLDLGFQRAPSVASVRKPAPPRYDR 288 >gi|327393100|dbj|BAK10522.1| penicillin-binding protein 5 precursor DacA [Pantoea ananatis AJ13355] Length = 410 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 49 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVG 108 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 109 QDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGL 168 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K Sbjct: 169 MNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNN 228 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S Sbjct: 229 IRQMNRNGLLWDTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGRETES 288 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 289 KKLLTWGFRFFETVAPLKAG-KEFASEPV 316 >gi|304395655|ref|ZP_07377538.1| Beta-lactamase [Pantoea sp. aB] gi|304356949|gb|EFM21313.1| Beta-lactamase [Pantoea sp. aB] Length = 420 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 59 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDLVTVG 118 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 119 PDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNL 178 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K Sbjct: 179 MNNYVKALGLQNTHFGTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNN 238 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S Sbjct: 239 IRQMNRNGLLWDTNLNVDGIKTGHTNSAGYNLVASATEGQMRLISAVMGGHTYKGRETES 298 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 299 KKLLTWGFRFFETVAPLKAG-KEFASEPV 326 >gi|238757942|ref|ZP_04619124.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] gi|238703927|gb|EEP96462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] Length = 397 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 96/270 (35%), Positives = 136/270 (50%), Gaps = 8/270 (2%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A Y L+D N+G ++AE D +PASLTK+M++YV+ LK K +T+ Sbjct: 35 APPVDAKAYVLMDYNSGKILAEGNSDQRLDPASLTKIMSSYVIGQALKAGKVHPDDLVTV 94 Query: 83 SKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 K+A S K G + L + K ++++S ND ++A+A+ + ++ FV Sbjct: 95 GKDAWATGNPALRGSSLMFLKPGDQVRLSDLNKGIVIQSGNDASIALADYIAGSQDSFVG 154 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MNN +K LGL+ THFM HG+ G Y+TARDMA+L + D P + K Sbjct: 155 LMNNYAKALGLANTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPDEYALHKEKEFTFN 214 Query: 197 GKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N N + T L DGMKTGFT +G N+VASA G LI+V+LGA R Sbjct: 215 KIRQINRNRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRIRFNE 274 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF I K F Q + Sbjct: 275 SEKLLTWGFRFYETVVPI-KTTKPFITQKV 303 >gi|49474795|ref|YP_032837.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49240299|emb|CAF26780.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 365 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 191/315 (60%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQ L + ++ + N+ + +A+ + +D TG ++ N W PASLTKLM Sbjct: 1 MRQLLYNLFLSFILNLTSTIVLAQP-----FISVDVTTGRILEHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + K ITIS+ A++ P +S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSIGKISSNKHITISEYAAKAPTYHSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FVQ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAVAGSQKAFVQQMNAEAQRLGMFGTHFTNASGLPDPHNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K+ PN+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILG+ + R + +A LL GF ++ + ++ + + + + ++ ++ CT Sbjct: 236 IIAVILGSNTISEREEKAAQLLERGFLHQGSLQSTLATLEPYGTKMI--QASDMRQQTCT 293 Query: 299 TQKEIINYNTQMKEA 313 + ++ N+ + Sbjct: 294 PEAMKMHANSYDDQG 308 >gi|291618006|ref|YP_003520748.1| DacD [Pantoea ananatis LMG 20103] gi|291153036|gb|ADD77620.1| DacD [Pantoea ananatis LMG 20103] Length = 386 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 14/332 (4%) Query: 2 RQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 R+ L+ + + S PF + L+D TG V+ PD NPASLT Sbjct: 4 RRLLITVTVFWASLAQADDMPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLT 63 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 KLMT YVV + +KK +T+ K+A S K G +++ + + + Sbjct: 64 KLMTGYVVDRAIDQKKITRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSRGV 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I+ S ND VA+A+ + ++ FV+ MN+ + LGL+ THF HG+ G +++A DMA Sbjct: 124 IIDSGNDACVALADYVAGSQDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 LS I P + ++ K L G N N + L DG+KTG T +GFNI+A Sbjct: 184 KLSRAIIDGEPDFYAMYREKTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNIIA 243 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 S + G LIAV++G R + + LL G + + K + Sbjct: 244 SNVVGQHRLIAVVMGGKSAKGREEQARKLLVWGQNTFDTVQLFHAGKKIGSEHVWYGNPH 303 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 + T ++ + + K + I+ Sbjct: 304 QVE---VGTANDVYLSLPRSEIPNVKAKYVIN 332 >gi|219871407|ref|YP_002475782.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding protein 5 [Haemophilus parasuis SH0165] gi|219691611|gb|ACL32834.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding protein 5 [Haemophilus parasuis SH0165] Length = 393 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 147/322 (45%), Gaps = 8/322 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T Sbjct: 33 AAPQLNAQTYILMDYNSGAVLASLNPDQRQAPASLTKMMTSYVVGEALKTGKIKNSDLVT 92 Query: 82 ISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +++N+ S +++++ K +IV S ND VAIAE + +E+ F+ M Sbjct: 93 VTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSM 152 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + GL THF HG+ Y++ARDMAI+ I D P+ + K Sbjct: 153 NKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKI 212 Query: 199 KYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 PN N + + DGMKTG T +G+N+VASA + LI+V++G R S Sbjct: 213 TQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESK 272 Query: 258 SLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 LL GF N K + + + + Y +LS ++ T + + + Sbjct: 273 KLLQWGFANFETVKPLSAGQSVLEQAVYYGDLSKAQLGTLQDSYITVPKGKTAELKARYT 332 Query: 314 KDKESHFIDFEKITLLKNKITK 335 +K + K ++ I + Sbjct: 333 LEKTNLEAPLVKGQVVGKVIYQ 354 >gi|332307130|ref|YP_004434981.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174459|gb|AEE23713.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 390 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 4/256 (1%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ + A T + L+D TG VIAE D PASLTK+MT+YV+ + Sbjct: 24 ASAAVIIPDAPTVSAKGFILVDYQTGKVIAEQNADIQIPPASLTKMMTSYVIGKEIANGN 83 Query: 74 AMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 T +TIS+NA S + G+ +++ + + +IV+S ND VA+AE + + Sbjct: 84 IKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVADLNRGIIVQSGNDACVAMAEHIAGS 143 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E F MN ++ LG+++T+F+N+HG+ HYTT RDMA L+ + TD P + Sbjct: 144 EDAFASMMNLHAEKLGMTSTNFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYSE 203 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K K N N + L DG+KTG T +G+++V+SA QGD LIAV++GA Sbjct: 204 KEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADSE 263 Query: 250 NTRNKVSASLLSMGFY 265 R + LL GF Sbjct: 264 RARKVENKKLLKYGFR 279 >gi|308186017|ref|YP_003930148.1| D-alanine carboxypeptidase [Pantoea vagans C9-1] gi|308056527|gb|ADO08699.1| D-alanine carboxypeptidase [Pantoea vagans C9-1] Length = 420 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 59 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVTVG 118 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 119 PDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNL 178 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K +GL THF HG+ G Y++ARDMA++ + D P+ ++ K Sbjct: 179 MNNYVKAIGLQNTHFGTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNN 238 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S Sbjct: 239 IRQMNRNGLLWDTNLNVDGIKTGHTNSAGYNLVASATEGQMRLISAVMGGHTFKGRETES 298 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 299 KKLLTWGFRFFETVAPLKAG-KEFASEPV 326 >gi|260769394|ref|ZP_05878327.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972] gi|260614732|gb|EEX39918.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972] Length = 390 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 12/280 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNP 53 R L++ A ++ S A +P Y L+D NTG V+ E+ + NP Sbjct: 3 RTGLIVALSATCMSLLSATSFAAPIVVPNPPQLSAKGYVLMDYNTGQVLVEHNANEKMNP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKL 110 ASLTKLMT+YV +K T +TIS+ A S + G+++ + + + Sbjct: 63 ASLTKLMTSYVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRG 122 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 LIV+S ND +VAIAE + +E FV MN+ ++ LGL+ T F N HG+ G YTT D+ Sbjct: 123 LIVQSGNDASVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDI 182 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 A L+ I D P+ + G N N + + DGMKTGFT +G+++V Sbjct: 183 AKLAQAIIRDLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLV 242 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 SA G+ LI+ ++GA +R S LLS GF Sbjct: 243 TSATNGNMRLISAVMGANSMKSRESDSKQLLSYGFRFFDT 282 >gi|188533505|ref|YP_001907302.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] gi|188028547|emb|CAO96409.1| Penicillin-binding protein 6B precursor (D-alanyl-D-alanine carboxypeptidase) [Erwinia tasmaniensis Et1/99] Length = 383 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 13/334 (3%) Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+++L + +++ + L+D TG ++ PD NPASLT Sbjct: 1 MKKYLPTSFTLLISLYGVAHAAEVTPPVIDAASWVLMDATTGQILTSGQPDERRNPASLT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 KLMT YVV + +K+ +T+ K+A S K G +++ + + + Sbjct: 61 KLMTGYVVDRAIDQKRITRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGEKVSVRDLSRGV 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I+ S ND VA+A+ + ++ FV MN+ + LGLS THF HG+ G +TTARD+A Sbjct: 121 IIDSGNDACVALADYVAGSQNNFVSMMNHYVEKLGLSNTHFETVHGLDAPGQFTTARDLA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 LS I + P + + K L G N N + L DG+KTG T ++GFNI+A Sbjct: 181 TLSRAIISGEPDFYQMYSEKSLTWNGITQQNRNGLLWDKELHVDGLKTGHTESAGFNIIA 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 S++ G + LIAV++G R + + LL G D ++ + K+ +N+ P Sbjct: 241 SSLDGQRRLIAVVMGGKSPKGREEQARQLLLWG-QRYFDTVQLFHAGKEIGNENVWYGNP 299 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 + + K++ + + + K + I+ + Sbjct: 300 H--RVALGSDKDVFYTLPRDEVQQVKAKYVIERK 331 >gi|212712937|ref|ZP_03321065.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM 30120] gi|212684415|gb|EEB43943.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM 30120] Length = 409 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 100/355 (28%), Positives = 158/355 (44%), Gaps = 24/355 (6%) Query: 6 VIIAMAMLSNI---FPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +I++ A +N FP SI Y L+D N+G V+AE+ D +PASLTK+M Sbjct: 25 LIVSTANFANADEAFPNTSIPAVPDIDAAAYILIDYNSGKVLAESNADQRRDPASLTKMM 84 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVK 114 T+YV+ +K K +T+ +A S K G +++ + + ++ Sbjct: 85 TSYVIGQAIKSGKIGANDMVTVGDDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQ 144 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+A+ + + FV MN LGL THF HG+ G Y++ARDMA++ Sbjct: 145 SGNDACVAMADYVAGDQANFVNLMNTYVTKLGLQNTHFQTVHGLDAAGQYSSARDMALIG 204 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P+ ++ K + N N + L DG+KTG T A+G+N+VASA Sbjct: 205 QALIRDVPEEYEIYKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLVASAK 264 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK----INYIIKDFYQQNLSNEV 289 GD LI+V++G R+ S LL+ GF K + + + + S Sbjct: 265 DGDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKPLQADVEFATAPVWFGDDSEVK 324 Query: 290 PNISEEVCTTQ--------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E++ T K T EA K+ + L I ++ Sbjct: 325 LGVVEDLYLTIPRGRLKDLKASYELTTTEIEAPLKKGQQVGTISFQLDGKTIEQR 379 >gi|59711352|ref|YP_204128.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Vibrio fischeri ES114] gi|197335666|ref|YP_002155507.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11] gi|59479453|gb|AAW85240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Vibrio fischeri ES114] gi|197317156|gb|ACH66603.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11] Length = 391 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 136/276 (49%), Gaps = 7/276 (2%) Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ ++ I+ + + A Y L+D ++G V+AE + NPASLT Sbjct: 8 LKRLILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+YV+ ++ + + ISKNA S + GST+ + K +I++ Sbjct: 68 KMMTSYVIGQEIESGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSTVKVRELNKGIIIQ 127 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E FV MN +K L L THF N HG+ + Y+T DMA++ Sbjct: 128 SGNDACVAMAEHVAGSEDAFVDLMNAWAKTLNLKNTHFANVHGLDRDDLYSTPYDMALIG 187 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P+ + K G N N + + DG+KTG T +GFN+V+SA Sbjct: 188 QALIRDVPEEYRVYSEKSFTYNGITQYNRNGLLWDKSMNVDGIKTGHTNGAGFNLVSSAT 247 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G L+AV++G N R S LL+ GF Sbjct: 248 EGKMRLVAVVMGTKSGNARKAESKKLLNYGFRFFET 283 >gi|153830932|ref|ZP_01983599.1| penicillin-binding protein 5 [Vibrio cholerae 623-39] gi|148873587|gb|EDL71722.1| penicillin-binding protein 5 [Vibrio cholerae 623-39] Length = 354 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 139/272 (51%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I ++ + P ++ A Y L+D ++G V+AE D +PASLTK+MT Sbjct: 13 SITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLSPASLTKMMT 72 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 73 SYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + Sbjct: 133 ACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALI 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ Sbjct: 193 RDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 253 RLVAVVMGTDNENARKAESKKLLSYGFRFFET 284 >gi|291616674|ref|YP_003519416.1| DacA [Pantoea ananatis LMG 20103] gi|291151704|gb|ADD76288.1| DacA [Pantoea ananatis LMG 20103] Length = 418 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 57 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVG 116 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 117 QDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGL 176 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P+ ++ K Sbjct: 177 MNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNN 236 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R S Sbjct: 237 IRQMNRNGLLWDTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGRETES 296 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 297 KKLLTWGFRFFETVAPLKAG-KEFASEPV 324 >gi|300722494|ref|YP_003711784.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297629001|emb|CBJ89586.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Xenorhabdus nematophila ATCC 19061] Length = 402 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++ F V +++ LS++ + Y L+D +G ++A N D +PASLT Sbjct: 11 IKSFAVGLSVFWLSSVNVYAMDEPAVPEIDARAYVLMDYYSGKILASNNADERLDPASLT 70 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+MT+YV+ +K K +TI K+A S K G + + + + + Sbjct: 71 KMMTSYVIGLAVKSGKISTEDWVTIGKDAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGI 130 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN SK LGL+ THF HG+ G Y+TA DMA Sbjct: 131 VIQSGNDASIALADYVAGSQDSFVDLMNQYSKTLGLTNTHFKTVHGLDAAGQYSTAHDMA 190 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +LS + D P+ + K + PN N + + DG+KTG T +GFN+VA Sbjct: 191 LLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTSGAGFNLVA 250 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 SA +G LI+V+LGA R S LLS GF K + Sbjct: 251 SATEGPMRLISVVLGAPSDRMRFSDSEKLLSWGFRFYESAKPL 293 >gi|254521328|ref|ZP_05133383.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14] gi|219718919|gb|EED37444.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14] Length = 406 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 5/249 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 + L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A Sbjct: 55 KAWVLMDYATGQVLAGENVHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWR 114 Query: 89 -----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ + Sbjct: 115 EGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAA 174 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN Sbjct: 175 KIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNR 234 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+ G Sbjct: 235 NLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWG 294 Query: 264 FYNKTDRKK 272 F + Sbjct: 295 FRFFETHRL 303 >gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] Length = 435 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 2/291 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + + + P+L + ++D N+G ++ + D P PAS+TK+MT Y+ F Sbjct: 25 LTTPTVAAAQIPYLQLNSAEPKYAAIVIDANSGEMLYDKRADSPRYPASVTKVMTLYLTF 84 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L E + LT + + A+ P+ G ++++D A++ + VKSAND+AVA+AE Sbjct: 85 EALSEGRLKLTDRVPFTARAAAQAPTKLGLPPGDSISVDEAIRAMTVKSANDVAVAMAER 144 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 L +E +F M + LG+ + F+NA G+ +TARD+AILS DFPQY Sbjct: 145 LGGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYS 204 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 YF IKG E +G+ N + G DG+KTG+T ASG+N+ SA++ + LIAV+LG Sbjct: 205 YFSIKGFEFRGRYIAGHNRLLTNMPGFDGLKTGYTNASGYNLAGSAVRDGRRLIAVVLGG 264 Query: 247 LDRNTRNKVSASLLSMGFY--NKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 R+ LL+ GF + + I + Y+ + + S E Sbjct: 265 SSTAWRDNNMEDLLTTGFDVLKRRSHGERTTIAANLYEDEPTGPIMRPSSE 315 >gi|293395975|ref|ZP_06640256.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291421473|gb|EFE94721.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 382 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 8/263 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 FP L+ + Y L+D +G ++A+N+ D NPASLTKLMT V+ L + K L Sbjct: 20 FPSLTPPPIDAA-SYVLMDYASGQIMAQNHADQRRNPASLTKLMTGLVIDHALDQHKISL 78 Query: 77 TTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 +T+ K+A S K G +T+ + + +I+ S ND VA+A+ + + Sbjct: 79 DDVVTVGKDAWAAGNPVFKGSSLMFLKPGDRVTVRDLSRGIIIDSGNDACVAMADYVAGS 138 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FV MNN + LGL THF HG+ G YTTA D+A++S I P H + Sbjct: 139 QTAFVDLMNNKAAQLGLKNTHFETVHGLDAPGQYTTAGDLAVISRAIIMSEPAEYHMYSE 198 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + L G N N + L DG+KTG T ++GFNI+ASA +GD+ LIAV++G Sbjct: 199 RSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIASATEGDRRLIAVVMGGKSP 258 Query: 250 NTRNKVSASLLSMGFYNKTDRKK 272 R + + LLS G + + Sbjct: 259 KGREEQARKLLSWGLRDFDSVRV 281 >gi|238794862|ref|ZP_04638462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] gi|238725805|gb|EEQ17359.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] Length = 401 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 143/293 (48%), Gaps = 8/293 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A Sbjct: 41 KAYVLMDYNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWA 100 Query: 89 YP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S K G + L + K ++++S ND ++A+A+ + ++ FV MNN + Sbjct: 101 TGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N Sbjct: 161 KALGLSNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQIN 220 Query: 203 TNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N + T L DGMKTGFT +G N+VASA +G LI+V+LGA R S LLS Sbjct: 221 RNRLLWNTNLNVDGMKTGFTSGAGHNLVASATEGPMRLISVVLGAPSDRVRFSESEKLLS 280 Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 GF I F Q + +E I +MK+ K Sbjct: 281 WGFRFYETVVPI-KATNPFVTQKVWFGDTGKAELGVAEDAAITIPKGKMKDLK 332 >gi|308069568|ref|YP_003871173.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] gi|305858847|gb|ADM70635.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] Length = 404 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 22/288 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY----------------YTLLDTNTGHVIAEN 45 + I+A + P AE ++ L+D +TG VI E Sbjct: 11 KVVAFILACLVALTAVPVGGWAEESRPESKTKEGSAAELAPEALSAILMDADTGTVIYEK 70 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 PAS+TK+MT + +++ K LT + S+ AS S + G MT+D Sbjct: 71 NSREKLPPASITKIMTMLLTMEAIQDGKLKLTDKVRASEYASSMGGSQIFLEPGEEMTVD 130 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 LK + + S ND +VA+AE + +E+ FV MN + LGL THF N +G+ HY+ Sbjct: 131 EMLKGIAMASGNDASVAMAEKIAGSEQAFVGMMNAKVQQLGLKDTHFANCNGLPVENHYS 190 Query: 166 TARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +A D+A++S + +PQ Y ++ +K NTN V + GADG+KTG+ Sbjct: 191 SAHDIAVMSRELLK-YPQITKYTGAYQDYLRKSSVKPFWLVNTNKLVRFYTGADGLKTGY 249 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T + F + A+A + ++AV+LG + RN +S+ F T Sbjct: 250 TAEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQYT 297 >gi|323170759|gb|EFZ56409.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + + P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRNVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|300926504|ref|ZP_07142297.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300417465|gb|EFK00776.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] Length = 347 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G LIAVI+GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|223986124|ref|ZP_03636147.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM 12042] gi|223961929|gb|EEF66418.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM 12042] Length = 383 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 22/323 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ I+ L + + ++ T L+D TG ++ E PAS+ Sbjct: 1 MKKLASIVIALSLFLVSVHATTSQGVDLTPSAKAAILIDYETGQILYEKNSSAKLYPASM 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+M+ +V + K T +T S +AS S + G MT+++ K V SA Sbjct: 61 TKMMSLLLVVEAIHNGKLSWDTEVTASAHASSMGGSQIFLETGEVMTVEDLYKASTVASA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VA+AE + +E+ F MN ++ LGL THF+NA G+ HY+ A+DMA + Sbjct: 121 NDAIVALAEKVGGSEENFAAMMNEKAEQLGLEQTHFVNATGLHDDNHYSCAKDMAAIGRA 180 Query: 177 IKTD-FPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + + + + I+ NTN + T+ G DG+KTG+T S + I Sbjct: 181 LIQEGQDDILRFTSTYDDYIRADTENKFWLVNTNKLIRTYQGMDGLKTGYTTQSMYCITV 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +A + LI V +G R+ RN +++LL GF YQ + P Sbjct: 241 TAKRDGLRLIGVAMGEPTRDVRNSEASALLDYGFSTYG------------YQIEMEKGTP 288 Query: 291 NISEEVCTTQKEIINYNTQMKEA 313 + +V + + + T+ Sbjct: 289 VTTIKVDNGKPDEVRLVTKEAIG 311 >gi|260777151|ref|ZP_05886045.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] gi|260606817|gb|EEX33091.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC BAA-450] Length = 388 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 156/333 (46%), Gaps = 16/333 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWN 52 M++ ++ A S F +IA +P Y L+D NTG V+ E + N Sbjct: 1 MKKTFLLKAALFSSIAVTFNAIAAPTIIPEPPTLGAKGYVLIDYNTGQVLVEKNANTKLN 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PASLTKLMTAYV +K L + ISKNA S + G+T+ L + + Sbjct: 61 PASLTKLMTAYVAGQEVKAGNITLDDQVVISKNAWAKNFPDSSKMFIEVGTTVPLMDLYR 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LIV+S ND +VAIAE + +E FV MN+ ++ LGL T + N HG+ +G Y+T D Sbjct: 121 GLIVQSGNDASVAIAEYVAGSEGAFVNLMNSWAEKLGLENTAYTNPHGLDSNGLYSTPMD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L I D P + G N N + + DGMKTG+T +G+++ Sbjct: 181 IAKLGQAIIRDLPDIYPLYSETSYTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 240 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNL 285 SA GD LIAV++GA +R S LLS GF K + + + Sbjct: 241 TTSATSGDMRLIAVVMGASSTKSRESESKQLLSYGFRFFETVSPTKAGDTVTEAKVWMGE 300 Query: 286 SNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKE 317 +++ ++E++ T + + D+E Sbjct: 301 QDQLSVGVNEDIYMTLPKGNAAKLTAEVEFDRE 333 >gi|210615757|ref|ZP_03290738.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787] gi|210150093|gb|EEA81102.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787] Length = 401 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 36/371 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------------------KLPYYTLLDTNTG 39 M++FL + ++++ + +++E+ P L++ +TG Sbjct: 1 MKRFLA-LMVSLVLCVTDVCAMSESEGILYEETKAGTEESAFGELEISTPSAVLMEVSTG 59 Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99 VI E D PAS+TK+MT ++F L+++K LT +++S+ A+ S + G Sbjct: 60 KVIYEKAADEQLPPASVTKVMTLLLIFDALEDEKIKLTDIVSVSEYAASMGGSQVFLEPG 119 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 T T+D +K + V SAND VA+AE + +E++FV MN +K LG+ T+F+N +G+ Sbjct: 120 ETQTVDTMIKCIAVASANDACVAMAEHIWGSEEEFVAKMNARAKELGMEHTNFLNCNGLD 179 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFL 211 GH TTARD+A++S + T +P+ Y I I NTN + + Sbjct: 180 ADGHVTTARDIALMSRELITRYPKIHDYSTIWMENITHTTKKGTTEFGLANTNKLIRQYQ 239 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 A G+KTG T + F + A+A + D LIAVI+ A D R K + +LL+ GF T K Sbjct: 240 YATGLKTGSTSKAKFCLSATAKKDDLELIAVIMAAPDPKARFKDATTLLNYGFGKCTKYK 299 Query: 272 KIN-YIIKDFY-QQNLSNEVPNISE----EVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325 + ++ + + E+P E + TT + +++ ++K++ EK Sbjct: 300 DTTPFELEPLKIRGGIEKEMPVAVETEFQYIDTTGANLSGIKRKIEIDQEKQAPVKKGEK 359 Query: 326 ITLLKNKITKK 336 + + + K Sbjct: 360 VGTVTYLLNGK 370 >gi|319645178|ref|ZP_07999411.1| DacF protein [Bacillus sp. BT1B_CT2] gi|317392987|gb|EFV73781.1| DacF protein [Bacillus sp. BT1B_CT2] Length = 395 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + + + ++A+ + L++ +TG V+ + Sbjct: 6 MKRHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKL 65 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L E K + + S+ A+ S + G MT+++ LK + Sbjct: 66 PPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGI 125 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN + LGL T F N G+ + GHY+TA DMA Sbjct: 126 AIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMA 185 Query: 172 ILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 +++ + + + + K NTN + + G DG+KTGFT + + Sbjct: 186 LMAKELLK-YENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKY 244 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQ-Q 283 + ASA +G+ +IAV+ GA RN +L F K N II D + Sbjct: 245 CLTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYETHPMYKRNEIISDLKVNK 304 Query: 284 NLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++ + SE + K+ N + KE K KE +K T L + KK Sbjct: 305 GREQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVKKGTELGTLVLKK 358 >gi|170021011|ref|YP_001725965.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli ATCC 8739] gi|193069040|ref|ZP_03049998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|256023756|ref|ZP_05437621.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia sp. 4_1_40B] gi|300951129|ref|ZP_07164994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300959200|ref|ZP_07171279.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|301028891|ref|ZP_07192063.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|307137249|ref|ZP_07496605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli H736] gi|331641134|ref|ZP_08342269.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736] gi|1778549|gb|AAB40832.1| penicillin-binding protein 5 [Escherichia coli] gi|169755939|gb|ACA78638.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC 8739] gi|192957584|gb|EDV88029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019] gi|260450201|gb|ACX40623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1] gi|299878139|gb|EFI86350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 196-1] gi|300314185|gb|EFJ63969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 175-1] gi|300449584|gb|EFK13204.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|323938394|gb|EGB34648.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520] gi|323943047|gb|EGB39206.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482] gi|323972087|gb|EGB67301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007] gi|331037932|gb|EGI10152.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736] Length = 427 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 332 Query: 285 L 285 + Sbjct: 333 V 333 >gi|157376621|ref|YP_001475221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis HAW-EB3] gi|157318995|gb|ABV38093.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis HAW-EB3] Length = 395 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 136/277 (49%), Gaps = 9/277 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 R +I ++ F + + A T + L+D NTG VIAE NPASL Sbjct: 11 RPLKTLILATTVACSFAYAAPVVTPNAPTVAAKAFILMDYNTGQVIAEENAYESLNPASL 70 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TK+MT+YV+ +K +TISK A S + G +T+D+ +I+ Sbjct: 71 TKMMTSYVIGHEIKVGNISPDDKVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNHGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L Sbjct: 131 QSGNDACVAMAEHIAGTEDGFVDLMNSWSKQLGMEDSYFENSHGLDSENHKTTAYDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ ++ K K N N + + DG+KTG T +G+N+V SA Sbjct: 191 GAALIRDVPEEYVLYKKKSFTYNSIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVTSA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + L+AV++G + R S +L+ GF Sbjct: 251 TKDGMRLVAVVMGTKSESARKAESKKILNYGFRFFET 287 >gi|324016991|gb|EGB86210.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] Length = 347 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + + K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILPRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|15800346|ref|NP_286358.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 EDL933] gi|16128615|ref|NP_415165.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. MG1655] gi|26246612|ref|NP_752652.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli CFT073] gi|74311168|ref|YP_309587.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei Ss046] gi|82775901|ref|YP_402248.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella dysenteriae Sd197] gi|89107501|ref|AP_001281.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|91209679|ref|YP_539665.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UTI89] gi|110640861|ref|YP_668589.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 536] gi|117622848|ref|YP_851761.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli APEC O1] gi|157159257|ref|YP_001461799.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli E24377A] gi|168770236|ref|ZP_02795243.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|168778083|ref|ZP_02803090.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|168779124|ref|ZP_02804131.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|168786481|ref|ZP_02811488.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|170080211|ref|YP_001729531.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170080312|ref|YP_001729632.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170683720|ref|YP_001742748.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli SMS-3-5] gi|188495416|ref|ZP_03002686.1| penicillin-binding protein 5 [Escherichia coli 53638] gi|191167358|ref|ZP_03029174.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|191172298|ref|ZP_03033840.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|194437465|ref|ZP_03069562.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|208808249|ref|ZP_03250586.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208815700|ref|ZP_03256879.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208823277|ref|ZP_03263595.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209398518|ref|YP_002269267.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209917890|ref|YP_002291974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli SE11] gi|215485672|ref|YP_002328103.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O127:H6 str. E2348/69] gi|217326125|ref|ZP_03442209.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|218553174|ref|YP_002386087.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli IAI1] gi|218557570|ref|YP_002390483.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli S88] gi|218688455|ref|YP_002396667.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli ED1a] gi|218694072|ref|YP_002401739.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 55989] gi|218699004|ref|YP_002406633.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli IAI39] gi|218703966|ref|YP_002411485.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UMN026] gi|227884389|ref|ZP_04002194.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972] gi|237707395|ref|ZP_04537876.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp. 3_2_53FAA] gi|238899909|ref|YP_002925705.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BW2952] gi|253774382|ref|YP_003037213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160714|ref|YP_003043822.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B str. REL606] gi|254791798|ref|YP_003076635.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. TW14359] gi|256020584|ref|ZP_05434449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|260842858|ref|YP_003220636.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|260853884|ref|YP_003227775.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|260866780|ref|YP_003233182.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|261224099|ref|ZP_05938380.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. FRIK2000] gi|261257793|ref|ZP_05950326.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. FRIK966] gi|291281583|ref|YP_003498401.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia coli O55:H7 str. CB9615] gi|293403894|ref|ZP_06647888.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1412] gi|293408757|ref|ZP_06652596.1| conserved hypothetical protein [Escherichia coli B354] gi|293413928|ref|ZP_06656577.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B185] gi|293418743|ref|ZP_06661178.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B088] gi|297519791|ref|ZP_06938177.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli OP50] gi|298379670|ref|ZP_06989275.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1302] gi|300817851|ref|ZP_07098065.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300823054|ref|ZP_07103188.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300901139|ref|ZP_07119246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300907806|ref|ZP_07125423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300920556|ref|ZP_07136981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300927270|ref|ZP_07142998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300931564|ref|ZP_07146878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300937897|ref|ZP_07152688.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300990039|ref|ZP_07179081.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300996738|ref|ZP_07181525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|301025238|ref|ZP_07188805.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|301049826|ref|ZP_07196766.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|301302111|ref|ZP_07208244.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|301329153|ref|ZP_07222150.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|306812936|ref|ZP_07447129.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli NC101] gi|307312652|ref|ZP_07592284.1| Beta-lactamase [Escherichia coli W] gi|309785937|ref|ZP_07680566.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|309795501|ref|ZP_07689918.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|312965077|ref|ZP_07779314.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312970712|ref|ZP_07784893.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|331645789|ref|ZP_08346892.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605] gi|331651643|ref|ZP_08352662.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718] gi|331656658|ref|ZP_08357620.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206] gi|331676290|ref|ZP_08377002.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591] gi|331682055|ref|ZP_08382679.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299] gi|332281770|ref|ZP_08394183.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|83288470|sp|P0AEB4|DACA_ECO57 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|83288471|sp|P0AEB3|DACA_ECOL6 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|83288472|sp|P0AEB2|DACA_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Beta-lactamase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|12513533|gb|AAG54966.1|AE005242_10 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli O157:H7 str. EDL933] gi|26107011|gb|AAN79195.1|AE016757_99 Penicillin-binding protein 5 precursor [Escherichia coli CFT073] gi|41212|emb|CAA29774.1| unnamed protein product [Escherichia coli K-12] gi|1651259|dbj|BAA35275.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. MG1655] gi|73854645|gb|AAZ87352.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei Ss046] gi|81240049|gb|ABB60759.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella dysenteriae Sd197] gi|91071253|gb|ABE06134.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli UTI89] gi|110342453|gb|ABG68690.1| D-alanyl-D-alanine carboxypeptidas, penicillin-binding protein 5 [Escherichia coli 536] gi|115511972|gb|ABJ00047.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli APEC O1] gi|157081287|gb|ABV20995.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A] gi|169888046|gb|ACB01753.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|169888147|gb|ACB01854.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli str. K-12 substr. DH10B] gi|170521438|gb|ACB19616.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5] gi|187766838|gb|EDU30682.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4196] gi|188490615|gb|EDU65718.1| penicillin-binding protein 5 [Escherichia coli 53638] gi|189002783|gb|EDU71769.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4076] gi|189360912|gb|EDU79331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4486] gi|189373492|gb|EDU91908.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC869] gi|190902607|gb|EDV62340.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A] gi|190907397|gb|EDV66994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11] gi|194423634|gb|EDX39624.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1] gi|208728050|gb|EDZ77651.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4206] gi|208732348|gb|EDZ81036.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4045] gi|208737470|gb|EDZ85154.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4042] gi|209159918|gb|ACI37351.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. EC4115] gi|209777148|gb|ACI86886.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777150|gb|ACI86887.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777152|gb|ACI86888.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777154|gb|ACI86889.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209777156|gb|ACI86890.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli] gi|209911149|dbj|BAG76223.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11] gi|215263744|emb|CAS08080.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli O127:H6 str. E2348/69] gi|217322346|gb|EEC30770.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7 str. TW14588] gi|218350804|emb|CAU96496.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli 55989] gi|218359942|emb|CAQ97485.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli IAI1] gi|218364339|emb|CAR02013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli S88] gi|218368990|emb|CAR16744.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli IAI39] gi|218426019|emb|CAR06836.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli ED1a] gi|218431063|emb|CAR11939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli UMN026] gi|222032392|emb|CAP75131.1| Penicillin-binding protein 5 [Escherichia coli LF82] gi|226898605|gb|EEH84864.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp. 3_2_53FAA] gi|227838475|gb|EEJ48941.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972] gi|238860729|gb|ACR62727.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BW2952] gi|242376408|emb|CAQ31107.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli BL21(DE3)] gi|253325426|gb|ACT30028.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972615|gb|ACT38286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli B str. REL606] gi|253976809|gb|ACT42479.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli BL21(DE3)] gi|254591198|gb|ACT70559.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli O157:H7 str. TW14359] gi|257752533|dbj|BAI24035.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257758005|dbj|BAI29502.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|257763136|dbj|BAI34631.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|281177781|dbj|BAI54111.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE15] gi|284920432|emb|CBG33493.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli 042] gi|290761456|gb|ADD55417.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia coli O55:H7 str. CB9615] gi|291325271|gb|EFE64686.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B088] gi|291428480|gb|EFF01505.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1412] gi|291433986|gb|EFF06959.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B185] gi|291471935|gb|EFF14418.1| conserved hypothetical protein [Escherichia coli B354] gi|294492617|gb|ADE91373.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034] gi|298279368|gb|EFI20876.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli FVEC1302] gi|300298421|gb|EFJ54806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 185-1] gi|300304453|gb|EFJ58973.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 200-1] gi|300355406|gb|EFJ71276.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 198-1] gi|300396141|gb|EFJ79679.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1] gi|300400495|gb|EFJ84033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1] gi|300407211|gb|EFJ90749.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300412458|gb|EFJ95768.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 115-1] gi|300416758|gb|EFK00069.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 182-1] gi|300457097|gb|EFK20590.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1] gi|300460633|gb|EFK24126.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300524403|gb|EFK45472.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 119-7] gi|300529548|gb|EFK50610.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300842663|gb|EFK70423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 124-1] gi|300844500|gb|EFK72260.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|305853699|gb|EFM54138.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli NC101] gi|306907354|gb|EFN37859.1| Beta-lactamase [Escherichia coli W] gi|307552502|gb|ADN45277.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972] gi|307627930|gb|ADN72234.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli UM146] gi|308120876|gb|EFO58138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 145-7] gi|308926048|gb|EFP71526.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 1617] gi|309700870|emb|CBJ00167.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Escherichia coli ETEC H10407] gi|310337361|gb|EFQ02499.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70] gi|312290168|gb|EFR18051.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75] gi|312945179|gb|ADR26006.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O83:H1 str. NRG 857C] gi|315059887|gb|ADT74214.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Escherichia coli W] gi|315135298|dbj|BAJ42457.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli DH1] gi|315255065|gb|EFU35033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1] gi|315287076|gb|EFU46490.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 110-3] gi|315292098|gb|EFU51450.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] gi|315299178|gb|EFU58432.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3] gi|320178421|gb|EFW53389.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905] gi|320193039|gb|EFW67679.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. EC1212] gi|320194186|gb|EFW68818.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327] gi|320198242|gb|EFW72846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B] gi|320638081|gb|EFX07845.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. G5101] gi|320643487|gb|EFX12657.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H- str. 493-89] gi|320648822|gb|EFX17449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H- str. H 2687] gi|320654408|gb|EFX22455.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660089|gb|EFX27619.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O55:H7 str. USDA 5905] gi|320664886|gb|EFX32021.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. LSU-61] gi|323153647|gb|EFZ39895.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14] gi|323158915|gb|EFZ44926.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010] gi|323179892|gb|EFZ65449.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180] gi|323185014|gb|EFZ70381.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357] gi|323191270|gb|EFZ76534.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1] gi|323379549|gb|ADX51817.1| Beta-lactamase [Escherichia coli KO11] gi|323945107|gb|EGB41169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120] gi|323952790|gb|EGB48658.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252] gi|323958390|gb|EGB54096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263] gi|323963201|gb|EGB58769.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489] gi|323967579|gb|EGB62995.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863] gi|323976385|gb|EGB71475.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509] gi|324006310|gb|EGB75529.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2] gi|324010472|gb|EGB79691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1] gi|324016087|gb|EGB85306.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 117-3] gi|324116706|gb|EGC10621.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167] gi|326341383|gb|EGD65175.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1044] gi|326345839|gb|EGD69578.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str. 1125] gi|327254316|gb|EGE65938.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v] gi|330910393|gb|EGH38903.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86] gi|331044541|gb|EGI16668.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605] gi|331049921|gb|EGI21979.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718] gi|331054906|gb|EGI26915.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206] gi|331076348|gb|EGI47630.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591] gi|331080734|gb|EGI51908.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299] gi|332096835|gb|EGJ01825.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae 155-74] gi|332104122|gb|EGJ07468.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9] gi|332341978|gb|AEE55312.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|301643955|ref|ZP_07243981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] gi|301077690|gb|EFK92496.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 146-1] Length = 427 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 332 Query: 285 L 285 + Sbjct: 333 V 333 >gi|319899483|ref|YP_004159580.1| penicillin-binding protein [Bartonella clarridgeiae 73] gi|319403451|emb|CBI77022.1| penicillin-binding protein [Bartonella clarridgeiae 73] Length = 367 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 187/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M Q ++ + +I L++A + +D TG ++ N W PASLTKLM Sbjct: 1 MHQLFHTFFLSFILSITSSLTLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + K ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A Sbjct: 56 TAYVIFRAMSTGKISSHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ +++ FVQ MN ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAISEAISGSQEAFVQQMNAEAQRLGMFGTNFTNTSGLPDPNNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNGKKIQFNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILG+ N R + +A LL GF +K + ++ + + ++ ++ +++C Sbjct: 236 IIAVILGSDSVNKREEKAAQLLDEGFSDKGSLQSTLATLEPYGTK--MSQTTDMRQQICA 293 Query: 299 TQKEIINYNTQMKEA 313 + + N+ +E Sbjct: 294 PEAIKMRLNSYDEEG 308 >gi|319409433|emb|CBI83082.1| Penicillin-binding protein [Bartonella schoenbuchensis R1] Length = 357 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 194/323 (60%), Gaps = 13/323 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQ L + ++ + ++ L++A + +D TG ++ N W PASLTKLM Sbjct: 1 MRQLLYSLCLSFILSMTSTLALAYP-----FISVDAATGRILQHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T YV+F + + ITISKNAS+ PS+S ++ GS +TL+ AL + +VKSAND+A Sbjct: 56 TTYVIFRAMSTGEISPQKHITISKNASQASPSHSGYEAGSILTLETALSITLVKSANDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ +++ FVQ MN ++ LG+ THF NA G+ +YTTARD+A+L+ +I+ + Sbjct: 116 IALSEAVSGSQEAFVQQMNVQAQRLGMFGTHFANASGLPHPDNYTTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ G+K N+N + F G DGMKTGFTCASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGDGRKIKFNSNNLINRFYGTDGMKTGFTCASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAV+LG N R +A LL GF + + +K + + ++ ++ E++C Sbjct: 236 IIAVVLGLDTINAREGKAAQLLETGFSLQGSAQSTLATLKPYGTK--MTQITDMEEQICD 293 Query: 299 TQKEIINYNTQMKEAKDKESHFI 321 + ++++ DKE + I Sbjct: 294 PE----VVKKRIEDTFDKEGNVI 312 >gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] Length = 385 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|148252530|ref|YP_001237115.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146404703|gb|ABQ33209.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] Length = 480 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 166/296 (56%), Gaps = 7/296 (2%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P L+ AE L++ +TG V+ +PW PAS+TKLMTAYV +KE K L Sbjct: 26 PRLANAEAL-----LLVEADTGKVLEAQNATYPWYPASVTKLMTAYVTLKAVKEGKLSLD 80 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T +T+S A+ PS ++ G+ +T+DNALK+++VKSAND+AV +AE + + F Sbjct: 81 TLVTVSPTAAAQSPSKMGYRPGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAM 140 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN T++ LG++ T ++N +G+ G T+ARD+AIL+ I D P+Y ++ I + Sbjct: 141 MNETAQKLGMTQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEYEYFVHIPSIRYGR 200 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LGA R + Sbjct: 201 RVVQNFNRLIGRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVLGASSGQMRGVRAI 260 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQ-QNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 +L GF N + + + Q + PN+ +++C ++ + + Sbjct: 261 QMLDRGF-NGNQLGWLKAPLGNVEQLVPVDATPPNLRDDMCGGKRHRPASDDDEET 315 >gi|170767905|ref|ZP_02902358.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] gi|170123393|gb|EDS92324.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii TW07627] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFRGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|110804719|ref|YP_688239.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 5 str. 8401] gi|110614267|gb|ABF02934.1| penicillin-binding protein 5 [Shigella flexneri 5 str. 8401] Length = 427 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 332 Query: 285 L 285 + Sbjct: 333 V 333 >gi|193063321|ref|ZP_03044411.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] gi|192930905|gb|EDV83509.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFSSEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|117924769|ref|YP_865386.1| penicillin-binding protein 6 [Magnetococcus sp. MC-1] gi|117608525|gb|ABK43980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Magnetococcus sp. MC-1] Length = 386 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 1/264 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R ++ + + +L+ + + + + D ++G ++ + D P PASLTK+ Sbjct: 12 LRNTMLALMVTILAGSQAWAEGLPFHVRAKAAIMGDIDSGAILFDQNSDMPLPPASLTKV 71 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+++ L++ L T + +S+NA + S + K G + +++ ++ + V+S ND Sbjct: 72 MTLYLLYEALQKGDITLETSMPVSRNAWQREGSKTFVKVGDKIRVEDLIRGIAVQSGNDA 131 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 V +AE L +EK F MN + LG+ A+HF NA G+ GH ++ARD IL+ + Sbjct: 132 CVVVAEYLGGSEKGFADMMNAKAAALGMEASHFANASGLPAPGHQSSARDFFILTAALMK 191 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FP+Y HY Q K G + N N + G+KTG T +G+ ++A + Q L Sbjct: 192 HFPEYAHYVQQKEYTFNGIRQVNRNHLLWKDKYITGLKTGHTSEAGYCLIAVREKDGQRL 251 Query: 240 IAVILGALDRNTRNKVSASLLSMG 263 +V++G+ R + S LL G Sbjct: 252 CSVVMGSSSTEVREEESMRLLHYG 275 >gi|24112068|ref|NP_706578.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 2a str. 301] gi|30062179|ref|NP_836350.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 2a str. 2457T] gi|82543078|ref|YP_407025.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii Sb227] gi|24050895|gb|AAN42285.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 301] gi|30040424|gb|AAP16156.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Shigella flexneri 2a str. 2457T] gi|81244489|gb|ABB65197.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella boydii Sb227] gi|313649723|gb|EFS14147.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str. 2457T] gi|332760998|gb|EGJ91286.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 4343-70] gi|332763369|gb|EGJ93609.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671] gi|332768266|gb|EGJ98451.1| penicillin-binding protein 6 [Shigella flexneri 2930-71] gi|333007457|gb|EGK26937.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri VA-6] gi|333007869|gb|EGK27345.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218] gi|333010043|gb|EGK29478.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-272] gi|333020876|gb|EGK40136.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-227] gi|333021546|gb|EGK40796.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|331666984|ref|ZP_08367858.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271] gi|331066208|gb|EGI38092.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|253687572|ref|YP_003016762.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822396|ref|YP_003260502.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium wasabiae WPP163] gi|251754150|gb|ACT12226.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606409|gb|ACX88895.1| Beta-lactamase [Pectobacterium wasabiae WPP163] Length = 403 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVG 101 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + +I++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN K LGL T+F HG+ G +++ARDMA++ + D P+ ++ K Sbjct: 162 MNGYVKALGLQNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + PN N + + L DG+KTG T ++GFN+VASA +G LI+ +LG + R S Sbjct: 222 IRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPLKAG-KEFASEPV 309 >gi|147677558|ref|YP_001211773.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146273655|dbj|BAF59404.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 392 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 90/329 (27%), Positives = 152/329 (46%), Gaps = 14/329 (4%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A LL+ TG +I E P AS+TKLMT + + E K LT Sbjct: 39 VPAALETTAESAILLEPATGKIIYEKEPHKRLPMASVTKLMTLLLAVEAVDEGKFKLTDR 98 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + S+NA E S + G M+L + L + ++SAND +VA+AE + +E+ FVQ MN Sbjct: 99 VVASENAWEMGGSQIYLEPGEEMSLWDLLLAIGLQSANDASVAVAEHIAGSEEAFVQAMN 158 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-- 197 +++LGL+ T+F+N HG+ HYT+A DMA++ + P + +K E++G Sbjct: 159 EKARSLGLNNTNFVNCHGLTADNHYTSAHDMAMI-LKEGLKSPLFRKISAMKEYELRGGA 217 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 K NTN + + GAD KTG+T A+ + + +SA + LI V+LG + + + S Sbjct: 218 FKLWNTNKLLWWYDGADAGKTGWTEAAKYCLASSAERDGLRLICVVLGTPEPQSHFREST 277 Query: 258 SLLSMGFYNK------TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 L GF + + + + V + E + ++++ Sbjct: 278 KLFDYGFARYKAVNLAPAGEVAGTVRVGKGKAGSVKALTAEKVAVVVPKGEDKGFESRVE 337 Query: 312 -----EAKDKESHFIDFEKITLLKNKITK 335 EA ++ I +T ++ + Sbjct: 338 LPGYIEAPVQKGQEIGSYVVTKKGEEVLR 366 >gi|52786237|ref|YP_092066.1| DacF [Bacillus licheniformis ATCC 14580] gi|163119526|ref|YP_079656.2| penicilin binding protein [Bacillus licheniformis ATCC 14580] gi|52348739|gb|AAU41373.1| DacF [Bacillus licheniformis ATCC 14580] gi|145903033|gb|AAU24018.2| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus licheniformis ATCC 14580] Length = 390 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + + + ++A+ + L++ +TG V+ + Sbjct: 1 MKRHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L E K + + S+ A+ S + G MT+++ LK + Sbjct: 61 PPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN + LGL T F N G+ + GHY+TA DMA Sbjct: 121 AIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMA 180 Query: 172 ILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 +++ + + + + K NTN + + G DG+KTGFT + + Sbjct: 181 LMAKELLK-YENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKY 239 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQ-Q 283 + ASA +G+ +IAV+ GA RN +L F K N II D + Sbjct: 240 CLTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYETHPMYKRNEIISDLKVNK 299 Query: 284 NLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++ + SE + K+ N + KE K KE +K T L + KK Sbjct: 300 GREQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVKKGTELGTLVLKK 353 >gi|295109899|emb|CBL23852.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 394 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 158/342 (46%), Gaps = 30/342 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L +I +LS IFP + E+ L++ TG ++ E + PAS+TK+M Sbjct: 11 LFLIICMILSTIFPVRAETESISPEILAASGILMEVETGKILYEKDSNTRRCPASVTKVM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T ++F L K L +T S +A S ++G +++ +K +++ S ND + Sbjct: 71 TLLLIFEQLDSGKLSLNDTVTTSAHAKSMGGSQVFLEEGEQQSVETMIKCIVIASGNDAS 130 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKT 179 VA+AE + +E+ FV MN ++ LG+ THF++ G+ HYT+A D+A++S + Sbjct: 131 VAMAEHIAGSEQSFVNRMNQRAEELGMKNTHFVDCCGLTDSDEHYTSAYDIALMSRELIR 190 Query: 180 DFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 PQ Y I I K NTN + T+ G G+KTG T + F + A Sbjct: 191 KHPQIFEYSSIWMENITHVTAQGTKKFGLTNTNRLIRTYPGCKGLKTGSTSKAKFCLSAV 250 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A + SL++V++ A D R K +++LL GF + Y +P Sbjct: 251 AERDGLSLLSVVMAAPDYKARLKDASALLDYGFDRCS-----------LYIDENPEPLPE 299 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 I T ++ I+ +K A D EKIT K ++ Sbjct: 300 I------TIQKGISSKVSLKYADTFRYVSTDGEKITAPKKEL 335 >gi|332094304|gb|EGI99355.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82] Length = 403 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPDVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVY 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVTPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|53803228|ref|YP_115023.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] gi|53756989|gb|AAU91280.1| putative D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str. Bath] Length = 362 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 123/249 (49%), Gaps = 1/249 (0%) Query: 24 ETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 E PY +++ + V+ E D +PASLTK+MT Y+VF L + + L Sbjct: 25 EAVAAPYSALVMEVESDRVLYERNADEIRHPASLTKMMTLYLVFEALVQGRISLYDTFYA 84 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ PS + G +T++ + L+ SAND A + E L +E F M + Sbjct: 85 SSYAASRSPSRIGLRPGDPLTVEEGILALVTCSANDAAATLGEGLAGSEPAFAAMMTRKA 144 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG+S T F NA G+ TTARDM L + FPQY YF + +G+ + N Sbjct: 145 RELGMSQTVFRNASGLPDPEQVTTARDMYRLGKALLKHFPQYYPYFSTSRFQYRGRSFHN 204 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + + GADG+KTGF ASGFN+VASA + L+ V+ G R+ +L Sbjct: 205 HNHLLENYYGADGIKTGFVNASGFNLVASARRNGVRLVGVVFGGNSSFRRDAHMRDILDD 264 Query: 263 GFYNKTDRK 271 GF R+ Sbjct: 265 GFAQIEGRE 273 >gi|83589906|ref|YP_429915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83572820|gb|ABC19372.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 385 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/274 (33%), Positives = 141/274 (51%), Gaps = 16/274 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++I+A+ + + A P L++ +TG V+ E PAS TK Sbjct: 5 KHVVLILALVVFCFLGSSPVKAADELQITAPAAVLMEASTGQVLYERGAREKRPPASTTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + L TPI +S+NA+ P ++ +KG +TL + +K +++S ND Sbjct: 65 IMTAILALEL-----GRLDTPIKVSENAATTPGASIYLQKGEVLTLGDLVKGALLESGND 119 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VAIAE L +E F MN + LG THF N +G+ GHYT+A D+A+++ R Sbjct: 120 ATVAIAEGLAGSEAGFAFLMNRKAWLLGARTTHFNNPNGLPDPGHYTSAYDLALIA-RYA 178 Query: 179 TDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P + +I G + NTN + ++ GADG+KTG T A+G +VASA + Sbjct: 179 LGNPVFRRLVATVEDQIPGPDGVRHLYNTNRLLESYPGADGVKTGTTAAAGQCLVASATR 238 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 G + LIAV+LG+ D R + +LL GF N Sbjct: 239 GGRQLIAVVLGSAD---RYGDTRTLLDYGFKNFY 269 >gi|294142181|ref|YP_003558159.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12] gi|293328650|dbj|BAJ03381.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12] Length = 390 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/272 (33%), Positives = 134/272 (49%), Gaps = 7/272 (2%) Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L++ + S+ + IA T Y L+D NTG +I E NPASLTK+MT Sbjct: 11 LILATTVVCSSTYAAPIVTPIAPTVAAKAYVLMDFNTGQIITEENAYESLNPASLTKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ +K + +SK A S + G +T+D+ +I++S ND Sbjct: 71 SYVIGQEMKAGNISPEDEVVVSKKAWSKNFPDSSKMFIEVGKHVTVDDLNHGIIIQSGND 130 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE FV MN+ +K LG+ +HF NAHG+ H +TA DMAIL + Sbjct: 131 ACVAMAEHIAGTEDGFVDLMNSWAKQLGMKDSHFENAHGLDATNHKSTAYDMAILGAALI 190 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P+ + K G K N N + + DG+KTG T +G+N+V SA + Sbjct: 191 RDVPKEYTLYSQKSFTYNGIKQYNRNGLLWDKSMKVDGIKTGHTSGAGYNLVTSATKDGM 250 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L++V++G + R S LL+ GF Sbjct: 251 RLVSVVMGTRSESARKAESKKLLNYGFRFFET 282 >gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] Length = 385 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|152969235|ref|YP_001334344.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893699|ref|YP_002918433.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella pneumoniae NTUH-K2044] gi|150954084|gb|ABR76114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546015|dbj|BAH62366.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 399 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R + +++A LS NI + A + L+D N+G V+AEN D +P Sbjct: 8 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 67 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTK+MT+YV+ +K K + +T+ +A S K G + + Sbjct: 68 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 127 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A Sbjct: 128 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 187 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMA++ + D P ++ K G + N N + L DG+KTG T +G+ Sbjct: 188 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 247 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 N+VASA +G LI+ ++G R S LL+ GF I Sbjct: 248 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPI 294 >gi|228998860|ref|ZP_04158445.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] gi|228760876|gb|EEM09837.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] Length = 386 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 14/323 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 31 AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DM+I++ + +P Y ++ K Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269 Query: 260 LSMGFYNKTDRK------KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 L F T +K KI + ++ + V + + + + E ++ Q A Sbjct: 270 LDYAFGQYTTKKLYKRGEKIQTVKVGKGKKEKVDLVSSDNVSLLMKKGENMDKVKQEVIA 329 Query: 314 KDKESHFIDFEKITLLKNKITKK 336 + K I +K L + KK Sbjct: 330 EKKVKAPI--KKGDALGTLVIKK 350 >gi|300716035|ref|YP_003740838.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661] gi|299061871|emb|CAX58987.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661] Length = 400 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 8/273 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 A + L+D N+G V+AE++ D +PASLTK+M +YVV +K K Sbjct: 31 APAAPQIDAKAWILMDYNSGKVLAESHADDRLDPASLTKMMASYVVGQAIKAGKITNDDM 90 Query: 80 ITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +T+ K+A S K G + + K +I++S ND ++A+A+ + ++ Sbjct: 91 VTVGKDAWATGNPILQGSSLMFLKPGDRIPVSELNKGIIIQSGNDASIALADYVAGSQDS 150 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MNN + LGL THF HG+ G Y+TARDMA++ + D PQ + K Sbjct: 151 FVSLMNNYVQALGLKNTHFKTVHGLDSDGQYSTARDMALIGQALIRDVPQEYALHKEKEF 210 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N N + + L DG+KTG T +G N+VASA+ GDQ LI+V+LG+ TR Sbjct: 211 TFNRIHQQNRNRLLWSSNLQVDGIKTGHTAGAGNNLVASAVSGDQRLISVVLGSPTDATR 270 Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + S LL+ GF I K F Q + Sbjct: 271 FRESEKLLTWGFRFYDTVTPI-KADKPFSTQRV 302 >gi|50120239|ref|YP_049406.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium atrosepticum SCRI1043] gi|49610765|emb|CAG74210.1| D-alanine carboxypeptidase [Pectobacterium atrosepticum SCRI1043] Length = 403 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 20/294 (6%) Query: 11 AMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 A+L + AE Y L+D N+G V+AE D +PASLTK Sbjct: 17 ALLVISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMNADTRRDPASLTK 76 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLI 112 +MT+YV+ +K K +T+ K+A S K G + + + +I Sbjct: 77 MMTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGII 136 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ARDMA+ Sbjct: 137 LQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFETVHGLDAPGQFSSARDMAL 196 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 + + D P+ ++ K + PN N + + L DG+KTG T ++GFN+VAS Sbjct: 197 IGQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVAS 256 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 A +G LI+ +LG + R S LL+ GF + K+F + + Sbjct: 257 ATEGQMRLISAVLGGRNAKGRESESKKLLTWGFRFFETVAPLKAG-KEFASEPV 309 >gi|15829924|ref|NP_308697.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. Sakai] gi|13360128|dbj|BAB34093.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli O157:H7 str. Sakai] Length = 403 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKDTDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|228992815|ref|ZP_04152740.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] gi|228766864|gb|EEM15502.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] Length = 386 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 14/323 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 31 AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DM+I++ + +P Y ++ K Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269 Query: 260 LSMGFYNKTDRK------KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 L F T +K KI + ++ + V + + + + E ++ Q A Sbjct: 270 LDYAFGQYTTKKLYKRGEKIQTVKVGKGKKEKVDLVSSDNVSLLMKKGENMDKVKQEVIA 329 Query: 314 KDKESHFIDFEKITLLKNKITKK 336 + K I +K L + KK Sbjct: 330 EKKVKAPI--KKGDALGTLVIKK 350 >gi|238751821|ref|ZP_04613308.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] gi|238709950|gb|EEQ02181.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] Length = 401 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/268 (34%), Positives = 135/268 (50%), Gaps = 8/268 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + + Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K Sbjct: 37 SIEAKAYVLMDYNSGKVLTEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGK 96 Query: 85 NASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +A S K G + L + K ++++S ND ++A+A+ + ++ FV M Sbjct: 97 DAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLM 156 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 NN +K LGL THFM HG+ G Y+TARDMA+L + D P+ + K Sbjct: 157 NNYAKALGLDNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKI 216 Query: 199 KYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + T + DGMKTGFT +G N+VASA G LI+V+LGA R S Sbjct: 217 RQINRNRLLWSTNINVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESE 276 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF I F Q + Sbjct: 277 KLLTWGFRFYETVVPI-KAANPFVTQKV 303 >gi|206577494|ref|YP_002239713.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|288936555|ref|YP_003440614.1| beta-lactamase [Klebsiella variicola At-22] gi|290510389|ref|ZP_06549759.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] gi|206566552|gb|ACI08328.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae 342] gi|288891264|gb|ADC59582.1| Beta-lactamase [Klebsiella variicola At-22] gi|289777105|gb|EFD85103.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55] Length = 399 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R + +++A LS NI + A + L+D N+G V+AEN D +P Sbjct: 8 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWVLIDYNSGKVLAENNADSRRDP 67 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTK+MT+YV+ +K K + +T+ +A S K G + + Sbjct: 68 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 127 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A Sbjct: 128 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 187 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMA++ + D P ++ K G + N N + L DG+KTG T +G+ Sbjct: 188 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 247 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 N+VASA +G LI+ ++G R S LL+ GF I Sbjct: 248 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPI 294 >gi|300930715|ref|ZP_07146093.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|301330462|ref|ZP_07223080.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|300461436|gb|EFK24929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 187-1] gi|300843583|gb|EFK71343.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1] gi|332092389|gb|EGI97462.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella boydii 5216-82] Length = 347 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI+ T++E + + K + ++ +++ Sbjct: 241 FTTVQILHRRKKVGTERIWYGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLNGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|317132116|ref|YP_004091430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense YUAN-3] gi|315470095|gb|ADU26699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense YUAN-3] Length = 419 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 86/313 (27%), Positives = 154/313 (49%), Gaps = 5/313 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T L + +TG ++ EN P PAS++K+MT +V ++ K T +++ Sbjct: 69 AVTTTAKSAVLAEQSTGRILYENNPHEKMYPASISKIMTELLVLEAIENGKLHFTDKVSV 128 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S +AS S+ + G MT+ + K ++V SAND AVA+AE + +E FV MN + Sbjct: 129 SAHASSMGGSDIWLEPGEVMTVLDLFKAMVVNSANDAAVALAEKVAGSEPAFVNLMNRKA 188 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--Y 200 K LG++ T+F NA G+ G+ T+A D+ ++S + + +Y I ++G K Sbjct: 189 KELGMNDTNFTNATGLDADGNLTSAYDVMLMSRELLR-HKEIFNYTTIWMDSLRGGKTAL 247 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + + GA+G+KTG T +G+ + +A++ LIAV++ R + +LL Sbjct: 248 FNTNRLIRFYQGANGLKTGSTGKAGYCLSGTALRDGMQLIAVVMNCPTLQERFTAAGTLL 307 Query: 261 SMGFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 GF N + KK++ + ++V +++ + E + ++ ++ Sbjct: 308 DYGFANWSCVTPKKLSKPLYVDVLHGAQDKVEAVADGNPSVVIEKGKEDGIQQKVSLAQN 367 Query: 319 HFIDFEKITLLKN 331 EK +L Sbjct: 368 VMAPVEKGQVLGQ 380 >gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 385 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|150397770|ref|YP_001328237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150029285|gb|ABR61402.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 376 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 177/312 (56%), Gaps = 9/312 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L L+ + P + ++D +T V W PASLTKLMTAY+ Sbjct: 18 LAGACAIFLAAVLPASANPR-------LVIDVDTLKVYEHQDIFQKWYPASLTKLMTAYI 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F +K + L +P+ ++KNA+ PPS +K G MTLD+ALK+++VKSAND+AVAIA Sbjct: 71 TFRAIKADQLTLESPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLVKSANDVAVAIA 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ TE+ F++ MN ++ +G++++ F+N HG+ G YTTARD+A+L+ +K +FPQY Sbjct: 131 ETVGGTEQAFIERMNAEARRIGMTSSRFINPHGLPGEGQYTTARDLAVLAVTLKREFPQY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF ++G K YPN N +G F GADGMKTGF CASGFN V+SA++ + +++V+L Sbjct: 191 ASYFALEGFTTGKKDYPNYNMLIGRFEGADGMKTGFICASGFNQVSSAVRSGRRVVSVVL 250 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 G R SA LL K I + + V ++S E+C+ Q + Sbjct: 251 GEDSLGARADESARLLQKALTTVATDKPSLAEIPPYGESR--EVVADVSREICSKQAAKV 308 Query: 305 NYNTQMKEAKDK 316 + + + K Sbjct: 309 RSEGRDEAGRQK 320 >gi|330006051|ref|ZP_08305469.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] gi|328535989|gb|EGF62402.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3] Length = 423 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R + +++A LS NI + A + L+D N+G V+AEN D +P Sbjct: 32 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 91 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTK+MT+YV+ +K K + +T+ +A S K G + + Sbjct: 92 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 151 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A Sbjct: 152 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 211 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMA++ + D P ++ K G + N N + L DG+KTG T +G+ Sbjct: 212 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 271 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 N+VASA +G LI+ ++G R S LL+ GF I Sbjct: 272 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPI 318 >gi|42543137|pdb|1NZO|A Chain A, The Crystal Structure Of Wild Type Penicillin-Binding Protein 5 From E. Coli gi|46014978|pdb|1NZU|A Chain A, Wild-Type Penicillin-Binding Protein 5 From E. Coli Modified By Beta-Mercaptoethanol gi|71042191|pdb|1Z6F|A Chain A, Crystal Structure Of Penicillin-Binding Protein 5 From E. Coli In Complex With A Boronic Acid Inhibitor gi|197305030|pdb|3BEB|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5 In Complex With A Peptide-Mimetic Penicillin gi|197305031|pdb|3BEC|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5 In Complex With A Peptide-Mimetic Cephalosporin gi|326327867|pdb|3MZD|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli: Cloxacillin Acyl-Enzyme Complex gi|326327868|pdb|3MZE|A Chain A, Structure Of Penicillin-Binding Protein 5 From E.Coli: Cefoxitin Acyl- Enzyme Complex gi|326327869|pdb|3MZF|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli: Imipenem Acyl- Enzyme Complex Length = 363 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 13 PQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 72 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 73 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 132 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 133 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG 192 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 193 IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAES 252 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 253 KKLLTWGFRFFETVNPL-KVGKEFASEPV 280 >gi|307246518|ref|ZP_07528590.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255504|ref|ZP_07537310.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259955|ref|ZP_07541668.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262081|ref|ZP_07543735.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306852581|gb|EFM84814.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861546|gb|EFM93534.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865983|gb|EFM97858.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868260|gb|EFN00083.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 392 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 16/289 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHP 50 M++ ++ ++++ + +IA+ N Y L+D N+G+V+A PD Sbjct: 1 MKR-TLLKSVSLCALAVSQFAIADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQR 59 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 PASLTK+MT+YVV LK+ K + +T+++N+ S + +++ + Sbjct: 60 QYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADL 119 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ LI+ S ND AVA+AE +++ F+ MN + GL T+F HG+ Y++A Sbjct: 120 MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSA 179 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVG-TFLGADGMKTGFTCASG 225 RDMAI+ + D P+ + K + KK PN N + + DGMKTG T +G Sbjct: 180 RDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAG 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +N+VASA + LI+V++G R S LL GF N K + Sbjct: 240 YNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQ 288 >gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] Length = 385 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|88860565|ref|ZP_01135203.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas tunicata D2] gi|88817763|gb|EAR27580.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas tunicata D2] Length = 387 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 4/264 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ + + S + Y L+D TG VIAE PD PASLTK+MT+YV+ Sbjct: 15 LVCTVGIFSASAQIMPAPPQVNAKGYFLVDFTTGKVIAEGAPDERLAPASLTKMMTSYVI 74 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 +K K +T+S+ A S + G ++++ + +I++S ND VA Sbjct: 75 GLEIKNKNISPNDLVTVSEKAWSKNFPDSSKMFIEVGKKISVEELNRGIIIQSGNDACVA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN ++ LG++ THF+N+HG+ H+TT RDMA L + D P Sbjct: 135 MAEHIAGSESAFADLMNAHAEKLGMTNTHFINSHGLDTDEHFTTPRDMATLGGALIRDVP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + K G K N N + L DG+KTG T +G+++V SA +GD L+A Sbjct: 195 DEYAIYSEKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKGDMRLVA 254 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 V++G R S LL+ GF Sbjct: 255 VVMGTESDRARRAESKKLLNYGFR 278 >gi|229013286|ref|ZP_04170427.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|229134885|ref|ZP_04263692.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228648560|gb|EEL04588.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228748053|gb|EEL97917.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 385 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLRENTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 L F +K K + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + K+ Sbjct: 329 EKKVKAPIKKGDALGTLVIKR 349 >gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 385 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+ Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+ Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LGL THF N G+ HY+TA DMAI++ + +P Y ++ K Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN L Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F +K K Q + + S+ V K+ N + +E Sbjct: 269 LDYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIA 328 Query: 316 KESHFIDFEKITLLKNKITKK 336 ++ +K L + KK Sbjct: 329 EKKVKAPIKKGDALGTLVIKK 349 >gi|329123117|ref|ZP_08251687.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius ATCC 11116] gi|327471672|gb|EGF17114.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius ATCC 11116] Length = 393 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 88/279 (31%), Positives = 132/279 (47%), Gaps = 5/279 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + LI+V++G R S LL GF N K + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLE 289 >gi|320175126|gb|EFW50238.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] gi|320185393|gb|EFW60163.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83] gi|332097731|gb|EGJ02705.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74] Length = 403 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|167856207|ref|ZP_02478943.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus parasuis 29755] gi|167852662|gb|EDS23940.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus parasuis 29755] Length = 393 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 147/322 (45%), Gaps = 8/322 (2%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T Sbjct: 33 AAPQLNAQTYILMDYNSGAVLASLNPDQHQAPASLTKMMTSYVVGEALKTGKIKNSDLVT 92 Query: 82 ISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +++N+ S +++++ K +IV S ND VAIAE + +E+ F+ M Sbjct: 93 VTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSM 152 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N + GL THF HG+ Y++ARDMAI+ I D P+ + K Sbjct: 153 NKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKI 212 Query: 199 KYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 PN N + + DGMKTG T +G+N+VASA + LI+V++G R S Sbjct: 213 TQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESK 272 Query: 258 SLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 LL GF N K + + + + Y +LS ++ T + + + Sbjct: 273 KLLQWGFANFETVKPLSAGQSVLEQAVYYGDLSKAQLGTLQDSYITVPKGKTAELKARYT 332 Query: 314 KDKESHFIDFEKITLLKNKITK 335 +K + K ++ I + Sbjct: 333 LEKTNLEAPLVKGQVVGKVIYQ 354 >gi|323495455|ref|ZP_08100532.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] gi|323310378|gb|EGA63565.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546] Length = 392 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 137/271 (50%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + ++ S+ F + A Y L+D ++G V+AE + +PASLTK+MT+ Sbjct: 15 IALSATFASSAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L+ L +TISKNA S + G+T+ +++ + +I++S ND Sbjct: 75 YVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNSNLYSTPYDMALLGSALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPEEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 255 LVAVVMGTKNANARKSESKKLLSYGFRFFET 285 >gi|119470843|ref|ZP_01613454.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Alteromonadales bacterium TW-7] gi|119446070|gb|EAW27349.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Alteromonadales bacterium TW-7] Length = 390 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 133/268 (49%), Gaps = 4/268 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ + A+ S + Y L+D TG VIAE D PASLTK+MT+YV+ Sbjct: 18 LVCSAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVI 77 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K T +TIS+ A S + G +++D +I++S ND VA Sbjct: 78 GTEIKVGNIAPTDMVTISEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQSGNDACVA 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 ++E + +E F MN + LG++ +HF+N+HG+ HYTT RDMA LS + D P Sbjct: 138 MSEHIAGSESAFADLMNAHAAKLGMTNSHFINSHGLDTDEHYTTPRDMATLSAALIRDVP 197 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + ++ K G K N N + L DG+KTG T +G+++V SA + LIA Sbjct: 198 EEYAIYKEKSYTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNGMRLIA 257 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTD 269 V++G R S LL+ GF Sbjct: 258 VVMGTSSERARKVESKKLLNYGFRFFET 285 >gi|309787902|ref|ZP_07682512.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 1617] gi|308924301|gb|EFP69798.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae 1617] Length = 347 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI+ T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|262274734|ref|ZP_06052545.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886] gi|262221297|gb|EEY72611.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886] Length = 347 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90 +D N+G ++AEN NPASLTK+MT+YV+ ++ L + ISKNA Sbjct: 1 MDYNSGKILAENNAYERLNPASLTKMMTSYVIGQEIERGNISLDDDVVISKNAWAKNFPG 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+T+ +++ + +I++S ND VA+AE + +E FV MN +K LG++ T Sbjct: 61 SSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDSFVDLMNGWAKTLGMNNT 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-T 209 F N+HG+ G Y+T DMA+L + D P+ + K G N N + Sbjct: 121 KFSNSHGLDDDGLYSTPYDMALLGQALIRDVPEEYRIYNEKSFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DG+KTG T +G+++V+SA +GD LIAV++G N R S LL+ GF Sbjct: 181 SMNVDGIKTGHTEKAGYSLVSSATEGDMRLIAVVMGTESANARKAESKKLLNYGFRFFET 240 >gi|294637039|ref|ZP_06715354.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291089736|gb|EFE22297.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 399 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 23/351 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L ++A+ +L+ Y LLD ++G V+ E D +PASLTK+M +YV Sbjct: 19 LTLVALPLLA----AEPAPPQINAKAYILLDYDSGRVLTEGNADQRLDPASLTKIMASYV 74 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSAND 118 + LK K + + K+A S K G + + + ++++S ND Sbjct: 75 IGQALKSGKIAPGDMVVVGKDAWATGNPVLRGSSLMFLKPGDRVPVSELNRGVVIQSGND 134 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 ++A+A+ + ++ FV MN ++ GL THF HG+ G Y++ARDMA++S + Sbjct: 135 ASIALADHVAGSQDAFVNLMNKYVESWGLKNTHFRTVHGLDSAGQYSSARDMALISQHLI 194 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K + N N + T L DG+KTGFT +G N+VASA G Sbjct: 195 ADVPDEYQLNKEKEFTFNNIRQTNRNRLLWDTSLNVDGVKTGFTNGAGHNLVASATDGPM 254 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFY-----------NKTDRKKINYIIKDFYQQNLS 286 LI+V+LGA R + S LL+ GF +K+ Y + + Sbjct: 255 RLISVVLGAPSDRVRFEESKKLLTWGFRFYETVTPIKIGQPFTTQKVWYGERSEVALGVD 314 Query: 287 NEVPNISEEVCTTQ-KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 K EA K+ + L I ++ Sbjct: 315 KSAAVTIPRGQMKDLKASYTLTQPTLEAPLKKGQVVGTIDFQLNGKSIEQR 365 >gi|329113407|ref|ZP_08242188.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum DM001] gi|326697232|gb|EGE48892.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum DM001] Length = 406 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 4/274 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + + +LD N+G + E D P+SLTK+MTAYV F LK + L + +S+ Sbjct: 62 DTQARWACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSE 121 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S G ++++ + ++ ++++S ND + IAE + +E++FV MN+T+ Sbjct: 122 RAWRMQGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATK 181 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K + N N Sbjct: 182 LGLTNSHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRN 241 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V L ADG+KTG T A GF + AS+ + + ++ + G R + + L+ F Sbjct: 242 SLVVKGL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAF 300 Query: 265 YNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE 295 N + + + + + ++ VP ++ + Sbjct: 301 ANFETAQIVSKGDVLEQAPVWMGVTQTVPLVAAQ 334 >gi|258542238|ref|YP_003187671.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256633316|dbj|BAH99291.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256636375|dbj|BAI02344.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-03] gi|256639428|dbj|BAI05390.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-07] gi|256642484|dbj|BAI08439.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-22] gi|256645539|dbj|BAI11487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-26] gi|256648592|dbj|BAI14533.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-32] gi|256651645|dbj|BAI17579.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654636|dbj|BAI20563.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-12] Length = 406 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 4/274 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + + +LD N+G + E D P+SLTK+MTAYV F LK + L + +S+ Sbjct: 62 DTQARWACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSE 121 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S G ++++ + ++ ++++S ND + IAE + +E++FV MN+T+ Sbjct: 122 RAWRMQGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATK 181 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K + N N Sbjct: 182 LGLTNSHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRN 241 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V L ADG+KTG T A GF + AS+ + + ++ + G R + + L+ F Sbjct: 242 SLVVKGL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAF 300 Query: 265 YNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE 295 N + + + + + ++ VP ++ + Sbjct: 301 ANFETAQIVSKGDVLEQAPVWMGVTQTVPLVAAQ 334 >gi|319404878|emb|CBI78479.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 368 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 186/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M Q + + +I LS+A + +D TG ++ N W PASLTKLM Sbjct: 1 MHQLFYTLFFFFILSIMSSLSLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 Y++F + K ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A Sbjct: 56 MTYIIFRAMSTGKISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARDMA+L+ +I+ + Sbjct: 116 IAISEAISGSQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYTHYFSIPAIDFGNGKKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILG+ N R + +A LL+ GF +K + ++ + + +++ ++ +++CT Sbjct: 236 IIVVILGSESINKREEKAAQLLNAGFSDKGSPQSTLATLEPYGTK--ISQITDMRQQICT 293 Query: 299 TQKEIINYNTQMKEA 313 + + N+ +E Sbjct: 294 PEAIKMRLNSYDEEG 308 >gi|28901151|ref|NP_800806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260362712|ref|ZP_05775581.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] gi|260879998|ref|ZP_05892353.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|260894673|ref|ZP_05903169.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|28809664|dbj|BAC62639.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308086579|gb|EFO36274.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|308091747|gb|EFO41442.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|308112412|gb|EFO49952.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] Length = 389 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 13/278 (4%) Query: 1 MRQFLVIIAMAMLSNI-FPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPW 51 MR+ + + + F + A +P Y L+D +TG V+ E D Sbjct: 1 MRKITLFNTTFLTGLVTFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV + L + IS+NA S + +++ L + Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVPLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + SA GD LIAV++GA ++ R S LLS GF Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFR 278 >gi|91977185|ref|YP_569844.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91683641|gb|ABE39943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 432 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 5/297 (1%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++ + P L+D +G V+ E D P+S+ KLMT +VF L + + LT Sbjct: 64 VAGGYETEAPTAILIDAESGSVLFEKNADELRPPSSMLKLMTVELVFHLLTKGEIKLTDD 123 Query: 80 ITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 IS+NA S + S +++D+ L+ I++S ND +A+AE + +E+ F Sbjct: 124 YRISENAWRRGGAPAGSSTMFAEIHSRVSIDDLLRGAIIQSGNDSCIALAEGIAGSEQAF 183 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + M ++ +GL+ + F N++G+ G+ + R++ L+ + +P Y F K Sbjct: 184 AERMTKRAREIGLAQSTFANSNGLPDPGNKMSVRELGRLARHLIQTYPDYYKLFGEKEFT 243 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + T GADG+KTG+T G+ +V SA+Q LI V+ G D + R Sbjct: 244 WNKIRQTNRNPLLNTMPGADGLKTGYTKDGGYGMVGSAVQNGTRLIVVVNGVEDADDRAS 303 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 + LL GF N R Y + E + + ++ N K Sbjct: 304 EAKKLLEWGFRNFESRPLFAAQATVGYARVFGGEKRYVGLTPVEPVRVMVRKNGSDK 360 >gi|315181925|gb|ADT88838.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218] Length = 390 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 94/277 (33%), Positives = 138/277 (49%), Gaps = 12/277 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWNPASL 56 L++ A ++ S A +P Y L+D NTG V+ E+ + NPASL Sbjct: 6 LIVALSATCMSLLSATSFAAPIVVPNPPQLSAKGYVLMDYNTGQVLVEHNANEKMNPASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMT+YV +K T +TIS+ A S + G+++ + + + LIV Sbjct: 66 TKLMTSYVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIV 125 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +VAIAE + +E FV MN+ ++ LGL+ T F N HG+ G YTT D+A L Sbjct: 126 QSGNDASVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKL 185 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASA 232 + I D P+ + G N N + + DGMKTGFT +G+++V SA Sbjct: 186 AQAIIRDLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSA 245 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G+ LI+ ++GA +R S LLS GF Sbjct: 246 TNGNMRLISAVMGANSMKSRESDSKQLLSYGFRFFDT 282 >gi|320175602|gb|EFW50695.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] Length = 347 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|297180556|gb|ADI16768.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0010_11B23] Length = 368 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 5/300 (1%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M + + + + Y L + NT V+ D P PASLTKLMT+YVV ++ Sbjct: 1 MVLSFIVSAAIPNPPDLGVGSYVLYEPNTKKVLVSFNADEPVQPASLTKLMTSYVVADYI 60 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 KE L IS A + S ++G+ + + + +K +I++S ND +VA+AE + Sbjct: 61 KEDFIRLDDTPKISIKAWKTEGSRMFIREGTKVAVSDLIKGMIIQSGNDASVALAEHVAG 120 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E+ F MN + LG+ + F NA G+ + T+A D+A+L+ + +FP++ + Sbjct: 121 SEENFAYLMNEYASQLGMQNSSFNNASGLPDPLNVTSAYDLALLTSALINNFPEHYKLYS 180 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K G K PN N + DG KTG+ +G+ +V SA++GD L+AV+LG+ D Sbjct: 181 EKSYTYAGIKQPNRNRLLWRSDIFDGAKTGYHSQAGYCLVGSAMRGDMRLVAVVLGSEDD 240 Query: 250 NTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVPN-ISEEVCTTQKEIIN 305 R ++L+ GF + T K K+ + + VP ++E++ T ++ Sbjct: 241 K-RFNDVSALMDYGFRHFTTEKLFSKLETYKELKVIAGVKENVPVGLTEDIILTLQKNKR 299 >gi|91792211|ref|YP_561862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella denitrificans OS217] gi|91714213|gb|ABE54139.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Shewanella denitrificans OS217] Length = 428 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 132/251 (52%), Gaps = 4/251 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + Y L+D ++G VIAE NPASLTK+MT+YV+ LK L +TI Sbjct: 70 APSVAAKAYVLMDYHSGQVIAEGNSYESLNPASLTKMMTSYVIGHELKVGNISLEDEVTI 129 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +KNA S + G T+ +D+ + +I++S ND VA+AE + TE FV MN Sbjct: 130 TKNAWSKNFPDSSKMFIEVGKTVKVDDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDLMN 189 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + SK LG++ ++F N+HG+ H TTA DMA+L + D PQ + K G K Sbjct: 190 SWSKQLGMNDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPQEYRVYAEKSFTYNGIK 249 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + L DG+KTG T +G+N+VASA LI+V+LG + R S Sbjct: 250 QYNRNGLLWDNSLNVDGIKTGHTSGAGYNLVASATSDGMRLISVVLGTSSESARKAESKK 309 Query: 259 LLSMGFYNKTD 269 LL+ GF Sbjct: 310 LLNYGFRFFET 320 >gi|269961547|ref|ZP_06175909.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] gi|269833588|gb|EEZ87685.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] Length = 392 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 133/271 (49%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+ Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L +TISKNA S + G+T+ + + + +I++S ND Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + LG+ THF N HG+ Y+T DMA+L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G D N R S LLS GF Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|315180861|gb|ADT87775.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218] Length = 391 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKLPYY--------TLLDTNTGHVIAENYPDH 49 M++ + V+ + LS F ++A +P L+D ++G V+AE Sbjct: 1 MKKSILNSVLASSIALSATFSTAALASPVVIPDAPQIAAKGFVLIDYHSGKVLAEKEMHT 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDN 106 +PASLTK+MT+YV+ LK +TIS+NA S + G+T+ + + Sbjct: 61 KLSPASLTKMMTSYVIGQELKRGNITNDDDVTISRNAWAKNFPDSSKMFIEVGTTVKVRD 120 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + +IV+S ND VA+AE + +E FV MN + LG+ THF N HG+ Y+T Sbjct: 121 LNQGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTLGMQETHFANVHGLDDPNLYST 180 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 DMA+L + D P + + G N N + + DG+KTG T +G Sbjct: 181 PYDMALLGQALIRDVPDEYKIYSQQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAG 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +++V+SA +G LIAV++G D N R S LLS GF Sbjct: 241 YSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGFRFFET 284 >gi|225570661|ref|ZP_03779684.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM 15053] gi|225160488|gb|EEG73107.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM 15053] Length = 423 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 19/331 (5%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T P L++ +TG VI E D PAS+TK+MT ++F LK+ K L ++ S+ Sbjct: 67 TVSAPSAVLMEASTGQVIYEKDADEQRPPASVTKIMTLLLIFDALKDGKIKLDDSVSTSE 126 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G T T+D +K + V SAND VA+AE +C E++FV++MN +K Sbjct: 127 FAASMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKNMNERAKG 186 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKK 199 LG++ THF+N +G+ GH TTARD+A++S + T +PQ Y I KG Sbjct: 187 LGMTNTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIRDYSMIWMENITHTTNKGTT 246 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 NTN V + A G+KTG T + + + A+A + LIAVI+ A D R + Sbjct: 247 EFGLTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAEKNGMELIAVIMAAPDHKARFSDA 306 Query: 257 ASLLSMGFY--NKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 +LL+ GF NK + KI I + ++ + E + TT ++ + + Sbjct: 307 TTLLNYGFGKCNKYEEDKIASIKPVSLSRGVKKTVKAEQTEPFAYIDTTGADLNSIEKKK 366 Query: 311 KEAKDKESHFIDFEKIT-----LLKNKITKK 336 K ++ KI L +I K Sbjct: 367 VMKKKLKAPIKKGTKIGEMKYYLAGKEIGSK 397 >gi|261253676|ref|ZP_05946249.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] gi|260937067|gb|EEX93056.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] Length = 392 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 135/272 (49%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + +A + P + A Y L+D ++G V+AE + +PASLTK+MT Sbjct: 14 SIALSATIATSAFASPIVVPDAPQIAAKGYVLMDFHSGKVLAEKEMNTKLSPASLTKMMT 73 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ L+ L +TISKNA S + G+T+ +++ + +IV+S ND Sbjct: 74 SYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIVQSGND 133 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L + Sbjct: 134 ACVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALI 193 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 194 RDVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQM 253 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 254 RLVAVVMGTKNANARKSESKKLLSYGFRFFET 285 >gi|225023258|ref|ZP_03712450.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC 23834] gi|224943903|gb|EEG25112.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC 23834] Length = 414 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 135/256 (52%), Gaps = 1/256 (0%) Query: 18 PFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P ++ K Y + D +G ++A + + PASLTKLMTAY+VF L+E K Sbjct: 51 PVTAVGLPEIKASAYAVYDAQSGQMLASHKLNEHIEPASLTKLMTAYLVFKALEEGKLKP 110 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T+S+ + S + +D+ LK +IV+S ND ++ +AE++ +E +FVQ Sbjct: 111 DQTFTVSEQGWKAEGSRMFLDPKTPARVDDLLKGVIVQSGNDASITLAEAVAGSEAQFVQ 170 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG++ THF N+ G+ HYT+ +D+ LS I D+PQY + I+ Sbjct: 171 LMNAEAKRLGMNDTHFENSTGLPGAQHYTSVQDLITLSAAIIHDYPQYYPLYAIQSYSYN 230 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 PN N + DGMKTG T ++G+N+VAS+ + + +I+V++G R S Sbjct: 231 NITQPNRNLLLYRDPDVDGMKTGHTDSAGYNLVASSKRNGRRVISVVVGTESMQARAAES 290 Query: 257 ASLLSMGFYNKTDRKK 272 + LL+ + K Sbjct: 291 SKLLNWALQSYDTPKL 306 >gi|149925918|ref|ZP_01914181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105] gi|149825206|gb|EDM84417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105] Length = 397 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 93/265 (35%), Positives = 137/265 (51%), Gaps = 9/265 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 S++ P Y LLD TG +AE +PASLTKLMTAY+ F+ L+ K+ Sbjct: 34 SSVMPP---PPEIGAKGYMLLDLTTGQTLAEFNSRERLDPASLTKLMTAYMAFAALESKQ 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 + + +S A + S + +T++ L +IV+S ND + AIAE L E Sbjct: 91 IRMDQQVPVSPYAWKAEGSRMFIEPNKPVTVEELLYGVIVQSGNDASRAIAELLAGDENN 150 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKG 192 F MN +K LGL+ T+F N+ G+ HYTTARD+ IL+ RI TDFP+Y + K Sbjct: 151 FATLMNQQAKRLGLTDTNFKNSTGLPDPQHYTTARDLGILAKRIITDFPEYYKKMYSTKE 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGAL 247 G + PN N + DGMKTG T ++G+ +V+SA + D+ L++V+LG Sbjct: 211 YTYNGIRQPNRNRLLWIDPSVDGMKTGHTESAGYCLVSSANRTLPNGVDRRLLSVVLGTT 270 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 R + S L++ G+ K Sbjct: 271 SDQARTQESLKLMNYGYQMFETVKL 295 >gi|156973523|ref|YP_001444430.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|156525117|gb|ABU70203.1| hypothetical protein VIBHAR_01214 [Vibrio harveyi ATCC BAA-1116] Length = 392 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 88/271 (32%), Positives = 133/271 (49%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+ Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L +TISKNA S + G+T+ + + + +I++S ND Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + LG+ THF N HG+ Y+T DMA+L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G D N R S LLS GF Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|300715824|ref|YP_003740627.1| penicillin-binding protein 5 [Erwinia billingiae Eb661] gi|299061660|emb|CAX58776.1| Penicillin-binding protein 5 [Erwinia billingiae Eb661] Length = 403 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 42 PDIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIKQDDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFKGSSLMFLKPGDRVAVSELTRGIVLQSGNDACVAMADYVAGSQDTFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTHFQTVHGLDADGQYSSARDMALIGRALIRDVPDEYAVYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQMNRNGLLWDTSLQVDGIKTGHTEAAGYNLVASATEGQMRLISAVMGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPLKAG-KEFASEPV 309 >gi|85714340|ref|ZP_01045328.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85698787|gb|EAQ36656.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 499 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 6/297 (2%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I M + + + + + L++ +TG V+ PW PAS+TKLMTAYV + Sbjct: 46 IWMVLAGLLIAGAPLRAAHATEAHLLIEADTGKVLEAENATFPWYPASITKLMTAYVTLT 105 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K + L T +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE + Sbjct: 106 AVKHGRITLDTLLTVSPTAAAQSPSKMGFRPGTRVTVDNALKMMLVKSANDMAVVLAEGV 165 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 + F MN ++ LG++ T ++N +G+ G ++ARD+AIL+ D P+Y ++ Sbjct: 166 GGSIDGFSAEMNAAAQRLGMTQTSYVNPNGLPADGQISSARDIAILARAFIHDLPEYEYF 225 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 I + + N N +G F GADG KTGF CASG+N+VASA Q + LIAV+LGA Sbjct: 226 VHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLGAS 285 Query: 248 DRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 R +A +L GF N T R + + + ++ PN+ +E+C ++ Sbjct: 286 SGTMRAVRAAQMLERGFANNTLSWLRPALGTVDR---LAPIAAAPPNLRDEMCGPKR 339 >gi|90425548|ref|YP_533918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90107562|gb|ABD89599.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 476 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 103/292 (35%), Positives = 163/292 (55%), Gaps = 4/292 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L++ +TG V+ +PW PAS+TKLMTAYV +KE + L T +T+ Sbjct: 20 PRAAQAEALLLIEADTGKVLQAENATYPWYPASVTKLMTAYVTLKAIKEGRITLDTLLTV 79 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+ + Sbjct: 80 SPTAASQSPSKMGFRAGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNDNA 139 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LG++ T ++N +G+ G T+ARD+ IL+ I D P+Y ++ I + + N Sbjct: 140 QRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIRDLPEYEYFVHIPSIRFGKRVTQN 199 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +G + GADG KTGF CASGFN+VASA + + LIAV+LGA R +A LL Sbjct: 200 FNRLIGRYPGADGFKTGFICASGFNLVASATRDGKRLIAVVLGAPSSQARALKAAQLLER 259 Query: 263 GFYNK--TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 GF T + + + + PN+ +E+C +++ + ++ Sbjct: 260 GFSANQLTWLRPALGTVDNLA--PIDAAPPNLRDEMCGPKRKRPASDESEED 309 >gi|307267584|ref|ZP_07549057.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917391|gb|EFN47692.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 157/352 (44%), Gaps = 25/352 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ I + +S++ + + ++D TG V+ E AS TK Sbjct: 49 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTK 108 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT V K L +T+SK A+ S+ G + +++ L L++ S ND Sbjct: 109 IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 163 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + + + FV+ MN +K +G THF+ G+ HYTTA D+A+++ Sbjct: 164 AATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 223 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 224 AFR-YPKFTEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 282 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287 SA + + IAV+L + + S +L F K + I K + N Sbjct: 283 SATREGRRFIAVVLNSPPM---WEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKEN 339 Query: 288 EVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V +SE+ C ++E N N + K ++ EKI + KI ++ Sbjct: 340 TVSVVSEKACVIPALEEEKQNVNLEFYLPKSVKAPVEKGEKIGYVTVKIGEE 391 >gi|262041277|ref|ZP_06014488.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041393|gb|EEW42453.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 423 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 15/287 (5%) Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R + +++A LS NI + A + L+D N+G V+AEN D +P Sbjct: 32 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 91 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNA 107 ASLTK+MT+YV+ +K K + +T+ +A S K G + + Sbjct: 92 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 151 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A Sbjct: 152 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 211 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 RDMA++ + D P ++ K G + N N + L DG+KTG T +G+ Sbjct: 212 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 271 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 N+VASA +G LI+ ++G R S LL+ GF I Sbjct: 272 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPI 318 >gi|154502522|ref|ZP_02039582.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149] gi|153796918|gb|EDN79338.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149] Length = 401 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 28/292 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETN----------------KLPYYTLLDTNTGH 40 M++ L ++ A+LS + ++AE + P L++ +TG Sbjct: 1 MKRVLAVLLSAVLSLSVAVVPGIQTLAEEPDAAQKTEGQQEAEVEVQAPSAVLMEASTGA 60 Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 V+ E D PAS+TK+MT ++F L++ K L ++ S+ A+ S + G Sbjct: 61 VLYEKDADTRRAPASVTKIMTMLLIFDALEDGKIALEDEVSTSEYAASMGGSQVFLEPGE 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T ++D LK + V SAND A+AE + +E+ FV+ MN + LG+ T F N +G+ Sbjct: 121 TQSVDTMLKCISVASANDACTAMAEYIAGSEEAFVKMMNERAAGLGMKNTTFQNCNGLDT 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLG 212 GH TTARD+A++S + +P+ Y I I NTN V + Sbjct: 181 EGHLTTARDIALMSRELIEKYPKIHDYCMIWMDTITHTTKKGTSEFGLSNTNKLVRQYPY 240 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A G+KTG T + F + A+A + LIAVIL + R + + LL+ GF Sbjct: 241 ATGLKTGSTDEAKFCVSATAEKDGMELIAVILSGENSKQRFQDATKLLNYGF 292 >gi|218708731|ref|YP_002416352.1| putative Penicillin-binding protein [Vibrio splendidus LGP32] gi|218321750|emb|CAV17705.1| putative Penicillin-binding protein [Vibrio splendidus LGP32] Length = 393 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 5/269 (1%) Query: 6 VIIAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A S P + A + L+D ++G V+AE + +PASLTK+MT+YV Sbjct: 18 LSATIATSSFAAPIIVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 V L+ L + IS+NA S + G+T+ ++ + +I++S ND V Sbjct: 78 VGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDACV 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L + D Sbjct: 138 AMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDV 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + K G N N + + DG+KTG T +G+++V+SA +G L+ Sbjct: 198 PDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLV 257 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD 269 AV++G + N R S LLS GF Sbjct: 258 AVVMGTKNANARKTESKKLLSYGFRFFET 286 >gi|188534483|ref|YP_001908280.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia tasmaniensis Et1/99] gi|188029525|emb|CAO97402.1| Penicillin-binding protein 5 [Erwinia tasmaniensis Et1/99] Length = 404 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 9/270 (3%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +T+ Sbjct: 42 PEIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDIVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + ++++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDTFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P + K Sbjct: 162 MNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALIGRALIRDVPDEYAVYHEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKV 255 + N N + T L DG+KTG T ++G+N+VASA +G LI+ ++G R Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLVASATEGQQMRLISAVMGGHTYKGRETE 281 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 S LL+ GF + K+F + + Sbjct: 282 SKKLLTWGFRFFETVAPLKAG-KEFASEPV 310 >gi|23099297|ref|NP_692763.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777526|dbj|BAC13798.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 388 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 19/353 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51 MR+ I+ + +L +F +++ L++ +TG ++ + Sbjct: 1 MRKIRNIMIIGLLGVLFFGHTVSAEESNQEVNLIEDATSGILMEQDTGTILYDKNAHEQL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L++ + +S A+ S + G MT+++ LK + Sbjct: 61 PPASMTKIMTLLLIMESLEKGDIAKDDVVIVSDKAASMGGSQIFLEAGEEMTVNDLLKGV 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 V S ND +VA+AE + +E+ FV MN +K L L T F N G+ + HY++A DMA Sbjct: 121 AVASGNDASVALAEKIAGSEEAFVNKMNEKAKELNLKNTLFQNTTGLPEENHYSSAYDMA 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 I++ + Y I ++ NTN V + GADG+KTG+T + + Sbjct: 181 IMANELLK-HESITEYTSIYEDYLRQGQDNEFWLVNTNKLVRFYKGADGLKTGYTSEAKY 239 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQ 282 + A+A + + ++AV++GA RN + LL F++ + K D + Sbjct: 240 CLTATAKRDNMRVVAVVMGAKSPKERNSMVTELLDYAFHSYETNPLFSKGDKVTEVDLLK 299 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 + S V T K+ E K +ES +K + I K Sbjct: 300 ADQSKVDIVTDHSVSTIHKKGDEKKNISTEVKLQESWTFPIQKGDEVGKLIIK 352 >gi|153838852|ref|ZP_01991519.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810] gi|260900530|ref|ZP_05908925.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] gi|149747680|gb|EDM58590.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810] gi|308107023|gb|EFO44563.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] Length = 389 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 13/278 (4%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPW 51 MR+ + + F + A +P Y L+D +TG V+ E D Sbjct: 1 MRKITLFNTTFLTGLATFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV + L + IS+NA S + ++++L + Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + SA GD LIAV++GA ++ R S LLS GF Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFR 278 >gi|325577705|ref|ZP_08147980.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus parainfluenzae ATCC 33392] gi|325160450|gb|EGC72576.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus parainfluenzae ATCC 33392] Length = 395 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 16/278 (5%) Query: 10 MAMLSNIFPFLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDHPWNPASLTK 58 + + S + + A + + Y Y L+D N+G V+A PD PASLTK Sbjct: 11 IVLCSGLMAASTFAASEDIQYGIAIPEVNAQTYVLMDYNSGAVLASLNPDQRQYPASLTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKS 115 +MT+YVV + LK+ K +TIS++A S +++ + K +I+ S Sbjct: 71 MMTSYVVGAALKQGKIHNEDMVTISESAWGRNFPDSSKMFLNLNQQVSVGDLNKGIIIVS 130 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE + T FV MN + GL T+F HG+ Y+TARDMAI+ Sbjct: 131 GNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAIIGA 190 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 I D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 HIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATS 250 Query: 235 -GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + LI+V++G R S LL GF N K Sbjct: 251 PNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLK 288 >gi|226939903|ref|YP_002794976.1| DacC [Laribacter hongkongensis HLHK9] gi|226714829|gb|ACO73967.1| DacC [Laribacter hongkongensis HLHK9] Length = 382 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 20/356 (5%) Query: 1 MRQFLVI-IAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + ++ A+L F+ A Y + D +G +A P+ Sbjct: 1 MKKLIAASLSTALLFTSSWALAEGTAGFVPPAPDIAGKAYIVNDFYSGQTLASRDPNTRI 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PASLTKLMTAY+ F +KE + + S+ A S + +++++ ++ + Sbjct: 61 EPASLTKLMTAYLTFKAIKEGRLKGEQMLQPSEKAWRTEGSRMFLDLRTPVSVNDLMRGM 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV+S ND V +AE++ +E+ F Q MN +K LG++ ++F N+ G+ Y T RD+ Sbjct: 121 IVQSGNDACVTLAEAIGGSEEVFAQMMNREAKRLGMTGSNFTNSTGLPDPNLYMTVRDLG 180 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 ILS + D+P++ + +K K PN N + DG+KTG T ++GFN+V+S Sbjct: 181 ILSGALIHDYPEFYPIYSMKEFTYNKIKQPNRNLLLYRDPSVDGLKTGHTASAGFNLVSS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNKTDRKKINYIIKDF--YQQNLSN 287 A + D+ +I+V++G R S+ LL+ G F++ + N + Y+ + ++ Sbjct: 241 AKRDDRRVISVVVGTTSPEARAVESSKLLNYGLQFFDTPRLYQANQSVSTLRVYKGDAND 300 Query: 288 EVPNISEEVCTTQKEIINYN-------TQMKEAKDKESHFIDFEKITLLKNKITKK 336 +++V T + TQ A K+ + +TL IT++ Sbjct: 301 VNVGFADDVYVTVPKGAASRIKVSMTSTQPLIAPVKQGQAVGKLTLTLDGKVITER 356 >gi|145630679|ref|ZP_01786458.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae R3021] gi|144983805|gb|EDJ91255.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae R3021] Length = 393 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 146/340 (42%), Gaps = 5/340 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + I K Sbjct: 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGK 350 >gi|270263700|ref|ZP_06191969.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13] gi|270042584|gb|EFA15679.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13] Length = 428 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 26/310 (8%) Query: 1 MRQ---FLVIIAMAMLSNI-FPFLSIAETNK--------------LPYYTLLDTNTGHVI 42 M+Q F +I ++A+ S I S+A+ + Y L+D N+G V+ Sbjct: 26 MKQVTSFRLIKSIALGSVIAMSAASVAQADDVNIKTMIPGVPQIDAEAYVLIDYNSGKVL 85 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTF 96 AE D +PASLTK+MT+YV+ LK K +T+ ++A S Sbjct: 86 AEMNADARRDPASLTKMMTSYVIGQALKAGKIGPEDMVTVGQDAWATGNPVFKGSSLMFL 145 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 K G + + + + ++S ND VA+A+ + ++ FV MN LGL THF H Sbjct: 146 KPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVSKLGLQNTHFQTVH 205 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADG 215 G+ G Y++ARDMA++ + D P ++ K + N N + T L DG Sbjct: 206 GLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDG 265 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 +KTG T A+G+N+VASA +G LI+ +LG R S LL+ GF + Sbjct: 266 IKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKLLTWGFRFFETVAPL-K 324 Query: 276 IIKDFYQQNL 285 + K+F + + Sbjct: 325 VGKEFASEPV 334 >gi|238920432|ref|YP_002933947.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] gi|238870001|gb|ACR69712.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] Length = 450 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 96/359 (26%), Positives = 157/359 (43%), Gaps = 26/359 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +R+ + ++++++ P + Y LLD ++G V+ E D +PASLT Sbjct: 61 IRRLTLGASLSLVA--LPLQAADPAPPQVNAKAYILLDYDSGRVLTEGNADERLDPASLT 118 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M +YV+ LK K + + K+A S K G + + + + Sbjct: 119 KIMASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGV 178 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA Sbjct: 179 VIQSGNDASIALADHVAGSQDTFVNLMNQYVSAWGLKNTHFQTVHGLDSEGQYSSARDMA 238 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 ++S R+ D P + K + N N + + L DG+KTGFT +G N+VA Sbjct: 239 LISQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTSGAGHNLVA 298 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL----S 286 SAI G LI+V+LGA R S LL+ GF + + + F Q + Sbjct: 299 SAIDGPMRLISVVLGAPTDRVRFDESKKLLTWGFRFYETVTPL-KVGQPFTTQKVWYGER 357 Query: 287 NEVPNISEEVCTTQ---------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 EVP ++ + K EA K+ + L I ++ Sbjct: 358 REVPLGVDKSASVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTIDFQLNGKTIEQR 416 >gi|300947320|ref|ZP_07161521.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] gi|300453072|gb|EFK16692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 116-1] Length = 347 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KDTHFETVHGLDALGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAVI+GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI+ T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|90416209|ref|ZP_01224141.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium HTCC2207] gi|90331934|gb|EAS47148.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium HTCC2207] Length = 391 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 150/298 (50%), Gaps = 14/298 (4%) Query: 1 MRQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++++LV A +LS + Y L+D NTGH++ EN D P P Sbjct: 2 LKKYLVSFAAIVLSLQGLSAVQAQQLIPAPPELAAKAYILIDANTGHILVENNADMPLPP 61 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNAL 108 ASL K+MT Y+V + + + + IS NA E S + +++ + + Sbjct: 62 ASLVKMMTTYIVSNEIAAGRMSKDETVLISDNAWEKGGAKTDGSTMFLNPRTRVSVSDLM 121 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + +I++S ND ++A+AE + E F MN+ + LG+ +T ++N+ G+ G +TAR Sbjct: 122 RGVIIQSGNDASIALAEHISGDEAAFADVMNHQASLLGMDSTQYLNSTGLPYEGMVSTAR 181 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 D+++L+ I D P++ + K + PN N + DG+KTG T A+G+ + Sbjct: 182 DLSLLARAIIQDHPEHYSIYSEKYFKYNNINQPNRNRLLWRDSSVDGLKTGHTNAAGYCL 241 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 V+SA + D LI+V++GA R + + LLS GF + D K I Y D ++N Sbjct: 242 VSSAKRRDMRLISVVMGADSDKARARETQKLLSYGFRHY-DTKTI-YSAGDILKENAK 297 >gi|269961828|ref|ZP_06176185.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] gi|269833406|gb|EEZ87508.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3] Length = 389 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 139/282 (49%), Gaps = 13/282 (4%) Query: 1 MRQ---FLVIIAMAMLS-NIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51 MR+ F +A + + + F F + P Y L+D +TG V+ E D Sbjct: 1 MRKNTLFNATLATTLTAVSAFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV +K L + IS+NA S + G++++L + Sbjct: 61 NPASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + LIV+S ND +VAIAE + +E FV MN+ + LGLS + F N HG+ G Y+T R Sbjct: 121 RGLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPR 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + SA GD L+AV++GA + R S LLS GF Sbjct: 241 LATSATNGDMRLVAVVMGAKSPSVRESESKQLLSYGFRFFDT 282 >gi|253576351|ref|ZP_04853681.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844244|gb|EES72262.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 396 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 138/288 (47%), Gaps = 21/288 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAEN 45 M++ ++ A + +++P + IA L+D +TG VI E Sbjct: 1 MKRRMLTWFAAFVLAVSVWPTYTSANHGGPHDGDDEIALAENALSAVLIDADTGTVIYEK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 PAS+TK+MT + + LT +T S+ A+ S + G TMT+D Sbjct: 61 KSHEKLPPASITKIMTMLLTMEAIDNGTLKLTDKVTTSEYAASMGGSQIFLEPGETMTVD 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 LK + + S ND +VA+AE + +EK FV+ MN ++ LGL THF N +G+ HY+ Sbjct: 121 ELLKGVAMASGNDASVALAEKIAGSEKAFVKMMNERAQQLGLKDTHFANCNGLPVADHYS 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +A D+AI+S + + Y ++ K NTN V + GADG+KTG+ Sbjct: 181 SAYDIAIMSRELLK-HEEITKYTGAYQDYLRQGTEKPFWLVNTNKLVRFYSGADGLKTGY 239 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T + F + A+A + LIAV+LG + TRN +++ F Sbjct: 240 TSEAKFCLAATAKRDGLRLIAVVLGEPNTKTRNSEVSAMFDYAFSQYA 287 >gi|91776847|ref|YP_546603.1| penicillin-binding protein 6 [Methylobacillus flagellatus KT] gi|91710834|gb|ABE50762.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Methylobacillus flagellatus KT] Length = 385 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 89/271 (32%), Positives = 140/271 (51%), Gaps = 5/271 (1%) Query: 5 LVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ +A A +N+ + T + Y L D N+ VIAE + PASLTK+M Sbjct: 12 IIAVAAAFTANMLMAHAADIPQPPTLAVKSYQLYDFNSERVIAEQDGNSRVEPASLTKIM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+ F +K LT + +S A + S + +T+D L +I++S ND + Sbjct: 72 TAYLAFKAIKNGHLTLTQTLPVSVKAWKVEGSKMFIEPNKPVTVDELLHGMIIQSGNDAS 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+AE + +E+ F + MN + LG+ TH++NA G+ HYTTA D+A+L+ + D Sbjct: 132 IALAEGIAGSEEGFAELMNKEAARLGMKGTHYVNATGLPDPQHYTTAHDLALLAAALIRD 191 Query: 181 FPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FP + + +K PN N + DGMKTG T ++G+ +V SA +GD + Sbjct: 192 FPDHYKRLYSMKEYTYNKISQPNRNRLLWLDPYVDGMKTGHTKSAGYCLVTSAKRGDTRM 251 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 I+V+LGA R S LL+ GF + Sbjct: 252 ISVVLGAPSDAARATESQKLLNYGFQFYESK 282 >gi|311030730|ref|ZP_07708820.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13] Length = 387 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 156/353 (44%), Gaps = 27/353 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++F+ IIA+A + F + AE T L++ +TG V+ E P Sbjct: 1 MKKFITAIIAIAFTFSAFSPVVGAEEKSVQLTENARSAILIERDTGQVLYEKNGHEKLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + + + I S+ A+ S + G MT D L+ + + Sbjct: 61 ASMTKIMTMLLIMEAIDKGELTWDEKIRTSEYAASMGGSQIFLEPGEEMTTDEMLRGIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE + +E FV MN +K LGL T F N G+ HY+TA DMA++ Sbjct: 121 ASGNDASVAMAERIAGSEAAFVDRMNAKAKELGLENTLFQNPTGLPAKNHYSTANDMAVM 180 Query: 174 SWRIK------TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + + QY Y + K NTN V + G DG+KTGFT + + Sbjct: 181 AKELLKFEGITKYTGQYEDYLRQDS--EKKFWLVNTNKLVRFYPGVDGVKTGFTQEAKYC 238 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + A+A + + +IAV+ GA RN ++L F Y Y++N++ Sbjct: 239 LTATAKKDNMRVIAVVFGAPTPKDRNAQITNMLDFAFSQ--------YKTHPMYERNVAV 290 Query: 288 EVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 IS +EV E I+ T+ E D I ++ K K Sbjct: 291 GRVEISKGSQKEVDAVTSEPISVLTKKGENTDDVEKIITVDENVKAPVKKGDK 343 >gi|253997624|ref|YP_003049688.1| beta-lactamase [Methylotenera mobilis JLW8] gi|253984303|gb|ACT49161.1| Beta-lactamase [Methylotenera mobilis JLW8] Length = 392 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 159/341 (46%), Gaps = 16/341 (4%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A + I P S+A + Y L D N G+VIA+N PASLTK+MTAY+ F Sbjct: 30 LAHAGAAQIAPPPSLA----VKAYLLKDFNNGYVIAQNNASMRVEPASLTKIMTAYLAFK 85 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K L + +S++A + S + T+D L +I+ S ND ++ +AE + Sbjct: 86 AVKNGHLQLNQTLPVSEHAWKTEGSKMFIEPNKPATVDELLHGMIIVSGNDASITLAEGI 145 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH- 186 +E F Q MN ++ LG+ TH+MNA G+ HYTTA D+A L+ + DFP+ Sbjct: 146 ASSEPLFAQMMNKEAERLGMKNTHYMNATGLPDPQHYTTAEDLATLAMALIRDFPEEYKR 205 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + +K K PN N + DGMKTG T ++G+ ++++A + + I+VILGA Sbjct: 206 LYSVKEYAYNNIKQPNRNRLLWLDPNVDGMKTGHTESAGYCLISTAKRDNTRYISVILGA 265 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQK- 301 R S LL+ GF + EV I + ++ T Sbjct: 266 PTDTARATESQKLLNYGFQFFDSALVYKQNKPVSKLKVWKGEVNEINSTTANDLYLTLPK 325 Query: 302 ------EIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + I +TQ A K+ I K L I+++ Sbjct: 326 GEYANVKAIASSTQPLIAPIKKGQVIGQVKFVLNGKTISER 366 >gi|53729243|ref|ZP_00133773.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209060|ref|YP_001054285.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae L20] gi|165977032|ref|YP_001652625.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150927|ref|YP_001969452.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250838|ref|ZP_07337032.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253460|ref|ZP_07339602.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248643|ref|ZP_07530657.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250875|ref|ZP_07532803.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253259|ref|ZP_07535133.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257674|ref|ZP_07539433.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307264281|ref|ZP_07545870.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097852|gb|ABN74680.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877133|gb|ABY70181.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916058|gb|ACE62310.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647704|gb|EFL77918.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650351|gb|EFL80513.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854854|gb|EFM87043.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857125|gb|EFM89253.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859246|gb|EFM91285.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863849|gb|EFM95773.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306870345|gb|EFN02100.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 392 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 16/289 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHP 50 M++ ++ ++++ + + A+ N Y L+D N+G+V+A PD Sbjct: 1 MKR-TLLKSVSLCALAVSQFATADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQR 59 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNA 107 PASLTK+MT+YVV LK+ K + +T+++N+ S + +++ + Sbjct: 60 QYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADL 119 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 ++ LI+ S ND AVA+AE +++ F+ MN + GL T+F HG+ Y++A Sbjct: 120 MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSA 179 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVG-TFLGADGMKTGFTCASG 225 RDMAI+ + D P+ + K + KK PN N + + DGMKTG T +G Sbjct: 180 RDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAG 239 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +N+VASA + LI+V++G R S LL GF N K + Sbjct: 240 YNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQ 288 >gi|259909131|ref|YP_002649487.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia pyrifoliae Ep1/96] gi|224964753|emb|CAX56270.1| penicillin-binding protein 5 [Erwinia pyrifoliae Ep1/96] Length = 404 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 10 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+ Sbjct: 130 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 190 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 249 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 250 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 308 Query: 284 NL 285 + Sbjct: 309 PV 310 >gi|259417976|ref|ZP_05741895.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] gi|259346882|gb|EEW58696.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] Length = 559 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 146/276 (52%), Gaps = 1/276 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + + + + ++D TG V+ D +PASLTK+MT Y+ F + Sbjct: 46 LTLAVGLVAVVPEQAAAAPYAAMVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAV 105 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + L T IT+S+NA PPS ++G + L ++ VKSAND A AI E++ Sbjct: 106 RNGEISLDTEITVSRNAEAEPPSELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISG 165 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E F + MN T+K LG++ T F NAHG+ +GH +TARDM IL + D+P+Y + F Sbjct: 166 SEAAFARRMNRTAKALGMTRTTFKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFS 225 Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 K K NTN + + GADG+KTG+T A+GFN+V+SA +GD+ +IA + G Sbjct: 226 RKSTNAGTKVVYNTNRRFLAAYRGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGQS 285 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 RN A LL +GF K+ Y N Sbjct: 286 TAARNAKVAELLDLGFRRAPAYAKLQKPPMPPYVGN 321 >gi|262403437|ref|ZP_06079995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] gi|262349941|gb|EEY99076.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] Length = 389 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 139/278 (50%), Gaps = 11/278 (3%) Query: 3 QFLVIIAMAMLSNI--FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + F +++ + P Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVKFSMACMAFVPTLGFSALSVIPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + GS + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHAQDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNPNLYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGQAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A GD LI+V++G+ R S LLS GF Sbjct: 245 ATSGDMRLISVVMGSKSTKIREAESKQLLSYGFRFFET 282 >gi|209694545|ref|YP_002262473.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) [Aliivibrio salmonicida LFI1238] gi|208008496|emb|CAQ78667.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) [Aliivibrio salmonicida LFI1238] Length = 391 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 135/276 (48%), Gaps = 7/276 (2%) Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ ++ I+ + + A Y L+D ++G V+AE + NPASLT Sbjct: 8 LKRIILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+YV+ + + + ISKNA S + GS + + + + +IV+ Sbjct: 68 KMMTSYVIGQEIASGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSVVKVRDLNQGIIVQ 127 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E FV MN SK L L THF N HG+ + Y+T DMA++ Sbjct: 128 SGNDACVAMAEHVAGSEDAFVDLMNAWSKTLNLQNTHFANVHGLDRDDLYSTPYDMALIG 187 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P+ + K G N N + + DG+KTG T +G+N+V+SA Sbjct: 188 QALIRDVPEEYRVYSEKSYTYNGITQYNRNGLLWDKSMNVDGIKTGHTDGAGYNLVSSAT 247 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G L+AV++G N R S LL+ GF Sbjct: 248 EGKMRLVAVVMGTKSGNARKAESKKLLNYGFRFFET 283 >gi|148554284|ref|YP_001261866.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] gi|148499474|gb|ABQ67728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] Length = 326 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 144/273 (52%), Gaps = 11/273 (4%) Query: 3 QFLVIIAMAMLSNIFPFL----SIAETNKLP-------YYTLLDTNTGHVIAENYPDHPW 51 ++L +A+A+ ++ P + A L+D +T ++ P Sbjct: 8 RWLACLALALPMSVMPLPWAVSTTAPAEAASPLGAPRFSAVLMDADTNEILYAEQPTAIR 67 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 +PAS+TK+MT Y+VF L + L + +S A+ PS G ++++ +A+ ++ Sbjct: 68 HPASITKVMTLYLVFDALDAGRLKLDDRVVMSPLAASQRPSKLGLGIGQSLSVADAISVV 127 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 VKSAND+AVA+AE + TE F + M ++ LG+ T F NA G+ GH+T+A+D+A Sbjct: 128 AVKSANDVAVALAEKIGGTEANFARMMTAKARQLGMRQTVFANASGLPNPGHFTSAQDIA 187 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 ILS + + P H F + + N N +G G DG+KTGFT SGF + AS Sbjct: 188 ILSAAMIRNHPARYHCFSEQSFSYGKLRMANHNKLLGNVPGVDGIKTGFTNDSGFTLTAS 247 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A++ LIAV+LG+ R++ SLL+ GF Sbjct: 248 AVRNGHRLIAVVLGSPSGWQRDRDITSLLNAGF 280 >gi|171320084|ref|ZP_02909152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MEX-5] gi|171094681|gb|EDT39727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MEX-5] Length = 437 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 GQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 306 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 R + S +L+ G+ + Sbjct: 307 EPKEGERTQDSMKMLNYGYSAFDAVRL 333 >gi|153833629|ref|ZP_01986296.1| penicillin-binding protein 5 [Vibrio harveyi HY01] gi|156977638|ref|YP_001448544.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|148870027|gb|EDL68982.1| penicillin-binding protein 5 [Vibrio harveyi HY01] gi|156529232|gb|ABU74317.1| hypothetical protein VIBHAR_06426 [Vibrio harveyi ATCC BAA-1116] Length = 389 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 139/282 (49%), Gaps = 13/282 (4%) Query: 1 MRQ---FLVIIAMAMLS-NIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51 MR+ F +A + + + F F + P Y L+D +TG V+ E D Sbjct: 1 MRKNTLFNATLATTLTAVSAFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV +K L + IS+NA S + G++++L + Sbjct: 61 NPASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + LIV+S ND +VAIAE + +E FV MN+ + LGLS + F N HG+ G Y+T R Sbjct: 121 RGLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPR 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + SA GD L+AV++GA + R S LLS GF Sbjct: 241 LATSATNGDMRLVAVVMGAKSPSVRESESKQLLSYGFRFFDT 282 >gi|159185835|ref|NP_356978.2| penicillin-binding protein dacf precursor [Agrobacterium tumefaciens str. C58] gi|159140969|gb|AAK89763.2| penicillin-binding protein dacf precursor [Agrobacterium tumefaciens str. C58] Length = 389 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 124/284 (43%), Positives = 172/284 (60%), Gaps = 3/284 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG VI+ W PASLTKLMTAY+ FS +K K T + +SK A++ P Sbjct: 55 MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKISPQTEVVMSKKAADQPA 114 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK G +T+D+ALKLL++KSANDIAVAIAE++ T FV MN ++ LG+S+TH Sbjct: 115 SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTH 174 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++N +G+ G YTTARD+A+L+ IK +FP+Y HYF ++G+ K Y N N VG F Sbjct: 175 YVNPNGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKNYANFNMLVGRFE 234 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN VASA++ +S+I V+LGA R SA LL MG + + Sbjct: 235 GADGMKTGFICASGFNQVASAVRNGRSVITVVLGADSLAGRTDQSADLLQMGLTAPSGQ- 293 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + EV +IS E+C + + + + + Sbjct: 294 --GVSLASLAPYGDTAEVNDISAEICNPKAAKVRSEGRDEAGRM 335 >gi|292898840|ref|YP_003538209.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946] gi|291198688|emb|CBJ45797.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946] Length = 404 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 10 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+ Sbjct: 130 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 190 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 249 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 250 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 308 Query: 284 NL 285 + Sbjct: 309 PV 310 >gi|145633414|ref|ZP_01789144.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655] gi|145635213|ref|ZP_01790917.1| penicillin-binding protein 5 precursor [Haemophilus influenzae PittAA] gi|144985977|gb|EDJ92579.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655] gi|145267492|gb|EDK07492.1| penicillin-binding protein 5 precursor [Haemophilus influenzae PittAA] Length = 393 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 137/291 (47%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + + ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKIM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|311280463|ref|YP_003942694.1| Beta-lactamase [Enterobacter cloacae SCF1] gi|308749658|gb|ADO49410.1| Beta-lactamase [Enterobacter cloacae SCF1] Length = 399 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 133/294 (45%), Gaps = 21/294 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAENY 46 M+ + ++ S A + Y L+D N+G V+AE Sbjct: 1 MKTSFSARLLITALSVAALSSAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQN 60 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGS 100 D +PASLTK+MT+YV+ +K K + +T+ +A S K G Sbjct: 61 ADERRDPASLTKMMTSYVIGQAMKAGKFKDSDLVTVGNDAWATGNPVFKGSSLMFLKPGM 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 + + ++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ Sbjct: 121 QVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVNALGLKNTHFQTVHGLDA 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTG 219 G Y++ARDMA++ + D P ++ K G + N N + L DG+KTG Sbjct: 181 DGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTG 240 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 T +G+N+VASA +G L++ ++G R S LL+ GF + Sbjct: 241 HTDKAGYNLVASATEGQMRLVSAVMGGRTYKGRETESKKLLTWGFRFFETVSPL 294 >gi|260597057|ref|YP_003209628.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter turicensis z3032] gi|260216234|emb|CBA29137.1| D-alanyl-D-alanine carboxypeptidase dacA [Cronobacter turicensis z3032] Length = 370 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 125/257 (48%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K + +TI Sbjct: 9 PQIDAEAYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDVVTIG 68 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ + ++ FV Sbjct: 69 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGL 128 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 129 MNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNG 188 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 189 IRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAES 248 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 249 KKLLTWGFRFFETVNPL 265 >gi|158422626|ref|YP_001523918.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans ORS 571] gi|158329515|dbj|BAF87000.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans ORS 571] Length = 512 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 171/302 (56%), Gaps = 4/302 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 +LS + + L++ +TG V+ + PW PAS+TKLMT YV + +KE Sbjct: 61 LLSATALLCAAGASVNAAPVLLVEADTGRVLEQQDAGKPWYPASVTKLMTVYVALNAVKE 120 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + + +T+S A+ PS FK G+ +TL+NAL++L+VKSAND+AV IAE + + Sbjct: 121 GRISFDSLLTVSPLAASQQPSKMGFKPGTQLTLENALRMLMVKSANDMAVVIAEGVGGSM 180 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 FV+ MN+T++ LG++ TH+ N +G+ G TTARD+A+L+ + FP+ F+I Sbjct: 181 PAFVEEMNDTAERLGMAGTHYNNPNGLPDPGQITTARDLAVLARALIYHFPEQETLFRIP 240 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + Y N N + + GADGMKTGF C++GFN+VA+A +G++ LIAVILGA Sbjct: 241 AMRLGKVVYRNYNRLIDRYPGADGMKTGFICSAGFNLVATATRGNKRLIAVILGAPSAVA 300 Query: 252 RNKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPNISEEVC-TTQKEIINYNTQ 309 R + +A LL GF + + + Q+ E ++ +C +KE+ + N Sbjct: 301 RTEQAAMLLEKGFQPSWSIFASAAPTLNSI--QDTGGEPTDMKPYICGGKRKELASENED 358 Query: 310 MK 311 Sbjct: 359 DA 360 >gi|37676160|ref|NP_936556.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] gi|37200701|dbj|BAC96526.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] Length = 391 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 15/293 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 M+ V + A+ +++ F + A +P Y L+D ++G V+ D N Sbjct: 5 MKSI-VSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLN 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PASLTKLMTAYV + + + IS+NA S + G++++L++ + Sbjct: 64 PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD Sbjct: 124 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L I D P + G N N + + DGMKTGFT +G+++ Sbjct: 184 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 243 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNKTDRKKINYIIKD 279 SA G+ LI+V++G+ ++R S LLS G F++ K N + D Sbjct: 244 ATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLAD 296 >gi|167040213|ref|YP_001663198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|300914297|ref|ZP_07131613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724467|ref|YP_003904218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|166854453|gb|ABY92862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|300889232|gb|EFK84378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581528|gb|ADN54927.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] Length = 382 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 156/352 (44%), Gaps = 25/352 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ I + +S++ + + ++D TG V+ E P AS TK Sbjct: 4 MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT V K L +T+SK A+ S+ G + +++ L L++ S ND Sbjct: 64 IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++ Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 179 AFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287 SA + + IAV+L + + S +L F K + I K + N Sbjct: 238 SATRDGRRFIAVVLNSPPM---WEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294 Query: 288 EVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V +SE C + E + N + K ++ EKI + KI ++ Sbjct: 295 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 346 >gi|145636767|ref|ZP_01792433.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH] gi|145270065|gb|EDK10002.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH] Length = 393 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 137/291 (47%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|161504189|ref|YP_001571301.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865536|gb|ABX22159.1| hypothetical protein SARI_02296 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 403 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 37/373 (9%) Query: 1 MRQFL-------VIIAMAMLSNIFPFLSIAETN-----------KLPYYTLLDTNTGHVI 42 M+ + + A+ + + N Y L+D N+G V+ Sbjct: 1 MKTIFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTF 96 AE D +PASLTK+MT+YV+ +K K T +T+ +A S Sbjct: 61 AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 K G + + ++ + ++S ND VA+A+ ++ FV MN+ LGL THF H Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADG 215 G+ G Y++ARDMA++ + D P ++ K G + N N + L DG Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI-- 273 +KTG T +G+N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 241 IKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKA 300 Query: 274 --NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEIINYNTQMKEAKDKESHFIDF 323 + + + N + ++V T K NT A +++ + Sbjct: 301 GKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGT 360 Query: 324 EKITLLKNKITKK 336 L I ++ Sbjct: 361 INFQLDGKTIEQR 373 >gi|256752045|ref|ZP_05492913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|256749055|gb|EEU62091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] Length = 379 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 156/352 (44%), Gaps = 25/352 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ I + +S++ + + ++D TG V+ E P AS TK Sbjct: 1 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT V K L +T+SK A+ S+ G + +++ L L++ S ND Sbjct: 61 IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++ Sbjct: 116 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 176 AFR-YPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287 SA + + IAV+L + + S +L F K + I K + N Sbjct: 235 SASREGRRFIAVVLNSPPM---WEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 291 Query: 288 EVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V +SE C + E + N + K ++ EKI + KI ++ Sbjct: 292 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 343 >gi|326424426|ref|NP_763548.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|319999816|gb|AAO08538.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] Length = 391 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 15/293 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 M+ V + A+ +++ F + A +P Y L+D ++G V+ D N Sbjct: 5 MKSI-VSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLN 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PASLTKLMTAYV + + + IS+NA S + G++++L++ + Sbjct: 64 PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD Sbjct: 124 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L I D P + G N N + + DGMKTGFT +G+++ Sbjct: 184 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 243 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNKTDRKKINYIIKD 279 SA G+ LI+V++G+ ++R S LLS G F++ K N + D Sbjct: 244 ATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLAD 296 >gi|115352994|ref|YP_774833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria AMMD] gi|115282982|gb|ABI88499.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia ambifaria AMMD] Length = 436 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 66 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 125 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + IT S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 126 ISMEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 185 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 186 GQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 245 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 246 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 305 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 R + S +L+ G+ + Sbjct: 306 EPKEGERTQDSMKMLNYGYSAFDAVRL 332 >gi|188534313|ref|YP_001908110.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] gi|188029355|emb|CAO97232.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99] Length = 402 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 143/291 (49%), Gaps = 12/291 (4%) Query: 6 VIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + A +L + + +A + L+D ++G V+AE+ D +PASLTK+M+ Sbjct: 15 ICTASLLLLTVSCAWAQDAPVAPQLDAKAWFLMDFHSGKVLAESNADLRLDPASLTKMMS 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKS 115 +YV+ LK K +T+ +A S K G + + K ++++S Sbjct: 75 SYVIGQALKAGKIGKDDLVTVGNDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQS 134 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND ++A+A+ + ++ FV MNN + LGL THF HG+ G ++TARDMA++ Sbjct: 135 GNDASIALADYVAGSQDAFVGLMNNYVQTLGLKNTHFKTVHGLDADGQFSTARDMALIGQ 194 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ 234 + D P + K + N N + + L DG+KTG T +G N+VASA++ Sbjct: 195 ALIRDVPDEYALHKEKEFTFNNIRQHNRNRLLWSSNLQVDGIKTGHTSGAGNNLVASAVE 254 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 GD+ +I+V+LGA R + S LL+ G N I K F Q + Sbjct: 255 GDRRMISVVLGAATDAVRFRESEKLLTWGLRNFETVTPIKAG-KAFATQRV 304 >gi|270261117|ref|ZP_06189390.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13] gi|270044601|gb|EFA17692.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13] Length = 401 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 163/346 (47%), Gaps = 16/346 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +++ +++ +L+ + A + L+D N+G ++ E D +PASLT Sbjct: 10 LKKLTFSVSILLLATPAIQAAEAPAAPQVDAKAFVLMDYNSGKILTEGNADTRLDPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLL 111 K+M++YV+ +K K +T+ K+A S K G + + K + Sbjct: 70 KIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVPVMELNKGI 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND ++A+A+ + ++ FV MNN +K+LGL THF+ HG+ G Y+TARDMA Sbjct: 130 VIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQYSTARDMA 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +LS + D P + K + N N + + L DG+KTG+T +G N+VA Sbjct: 190 LLSQALIRDVPVEYALHKEKEFTFNKIRQVNRNRLLWSSNLNVDGIKTGYTGGAGHNLVA 249 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS---- 286 SA G LI+V+LGA R S LL+ GF I K F Q + Sbjct: 250 SATDGPMRLISVVLGAPSDRIRFSESEKLLTWGFRFYETATPI-KTDKPFVTQRVWFGEI 308 Query: 287 NEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 N+VP ++++ T + N + ++ + K ++ Sbjct: 309 NDVPLGVAKDAAVTIPKGQMKNLKASYKLNQPTLEAPLAKNQVVGT 354 >gi|83941609|ref|ZP_00954071.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. EE-36] gi|83847429|gb|EAP85304.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. EE-36] Length = 502 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 162/317 (51%), Gaps = 8/317 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L I+A + I P ++A PY ++D TG V+ D +PASLTK+MT Y Sbjct: 13 LFILAAIWILLILPLSAMA----APYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F +K + L + + I+ +A+ PPS K G T+ L ++ VKSAND A AI Sbjct: 69 IAFEAIKRGEISLDSKVKITSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAI 128 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E++ +E KF + MN T+K LG++ T F NAHG+ + GH +TA DM I+ + D P+ Sbjct: 129 GEAIEGSEAKFARRMNRTAKALGMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPE 188 Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + +K +TN + ++ GADG+KTG+T A+GFN+ ASA +G++ +I Sbjct: 189 YYNLFSRITADAGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVT 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 + G + RN A L+ +GF + K Y + P S+ Sbjct: 249 VFGGTSTSARNAKVAELMDLGFRRAPSSAPLKKPSKPAYAD--VEDTPVASDGAAGKVIR 306 Query: 303 IINYNTQMKEAKDKESH 319 ++ T K + H Sbjct: 307 LVGAVTTSKRPTLRPGH 323 >gi|319896451|ref|YP_004134644.1| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae F3031] gi|317431953|emb|CBY80301.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae F3031] Length = 393 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 146/340 (42%), Gaps = 5/340 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSRAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + I K Sbjct: 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGK 350 >gi|238789672|ref|ZP_04633455.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] gi|238722225|gb|EEQ13882.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] Length = 401 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 135/262 (51%), Gaps = 8/262 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D ++G V+AE D +PASLTK+M++YV+ +K K +T+ K+A Sbjct: 43 YVLMDYDSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102 Query: 91 ------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 S K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LGL+ T+FM HG+ G Y+TA DMA+L + D P+ + K + N N Sbjct: 163 LGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222 Query: 205 WAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + T L DGMKTG+T +G N+VASA G LI+V+LGA R S LL+ G Sbjct: 223 RLLWNTNLNVDGMKTGYTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWG 282 Query: 264 FYNKTDRKKINYIIKDFYQQNL 285 F I K F Q + Sbjct: 283 FRFYETVVPI-KATKPFVTQKV 303 >gi|296272811|ref|YP_003655442.1| beta-lactamase [Arcobacter nitrofigilis DSM 7299] gi|296096985|gb|ADG92935.1| Beta-lactamase [Arcobacter nitrofigilis DSM 7299] Length = 389 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 103/355 (29%), Positives = 159/355 (44%), Gaps = 21/355 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ + I + + E + K Y L+D +T ++ D P Sbjct: 1 MKKIICSIFIITSLLAQCLQADEEKSIQPLINIKAKSYILMDYDTKEILLSKNTDEKLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTKLMT+Y+V + + + L + ISK A + S + + + L +K +IV Sbjct: 61 ASLTKLMTSYIVSTKINSGEISLKDKVFISKKAWKMTGSRTFLNVNTKVDLSKLIKGMIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +AIAE + +EK+FV+ MN +K L L TH+ +A G+ HY+TA D+A+L Sbjct: 121 QSGNDAVIAIAEHISGSEKEFVKLMNKYAKKLNLKNTHYNDATGLPTKDHYSTAHDIALL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S I DFP + ++ IK + N N + DG+KTG T A+G+ + +SA Sbjct: 181 SRAIIKDFPDHYSWYSIKNFKYNNISQNNRNKLLWKDTSVDGLKTGHTMAAGYCLASSAK 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYIIKDFYQ 282 + + LIAV++G R K S LL+ GF K KI K+ Sbjct: 241 RKNMRLIAVVMGTKSSKARAKESEKLLNYGFKYYDTHKLYTANSIIKKSKIWEGKKNEVS 300 Query: 283 QNLSNEVPNISEEVCTTQKE-IINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 L ++ Q IN + +K E L +KI KK Sbjct: 301 LGLDKDLTITIIRSQNKQLHTAINIKKPIIATVNKGQKLGTIEVY--LGDKILKK 353 >gi|254516725|ref|ZP_05128784.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR5-3] gi|219675148|gb|EED31515.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [gamma proteobacterium NOR5-3] Length = 379 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 5/240 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y L+D N+G V+ E+ D PASLTKLMTA+V+ S + + +T+S+NA Sbjct: 27 YLLVDANSGAVLVESNADEQLPPASLTKLMTAFVLASEIDAGRLSRDDQVTVSRNAWSQN 86 Query: 91 P-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P S + +T+ + +++ S ND VA+AE + +E F MN + L Sbjct: 87 PVFNGSSLMWIEPRMPVTIGQLEQGIVISSGNDATVAVAEHIAGSETAFADLMNKHAAEL 146 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ ++F N+HG+ H TARD+A L+ I T FP++ + + + N N Sbjct: 147 GMHGSYFANSHGLPHPQHLMTARDLATLAKAIITRFPEHYKVYSQREYTYNDIRQYNRNK 206 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G DG+KTG+T +G+ +VASA + LI+V++G R + + SLL+ GF Sbjct: 207 LLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARETRSLLNYGFR 266 >gi|295096612|emb|CBK85702.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 403 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL +HF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVNPLKAG-KEFASEPV 309 >gi|283479159|emb|CAY75075.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia pyrifoliae DSM 12163] Length = 411 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 76 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+ Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 256 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 315 Query: 284 NL 285 + Sbjct: 316 PV 317 >gi|54309028|ref|YP_130048.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46913460|emb|CAG20246.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 404 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 10/278 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 R + LS P L++ A Y L+D NTG V+ E + NPAS Sbjct: 19 RIISAVTGTFFLSLSLPALAVPTVIPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPAS 78 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS+NA S + G+ +++ + + LI Sbjct: 79 LTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLI 138 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND +VAIAE + ++ FV MN+ +KNLG++ + F NAHG+ Y+T D+A+ Sbjct: 139 IQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIAL 198 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 L + D P + + N N +G + DGMKTG+T +G+++ +S Sbjct: 199 LGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTSGAGYSLASS 258 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A QG+ LI+V++G+ +R S LL+ GF + Sbjct: 259 ATQGNMRLISVVMGSSSTKSREAESKQLLNYGFRFFST 296 >gi|296103402|ref|YP_003613548.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057861|gb|ADF62599.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 403 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL +HF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVNPLKAG-KEFASEPV 309 >gi|301168630|emb|CBW28220.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus influenzae 10810] Length = 393 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 137/291 (47%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + + ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVTLSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|292487601|ref|YP_003530473.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora CFBP1430] gi|291553020|emb|CBA20065.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora CFBP1430] Length = 411 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 76 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+ Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 256 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 315 Query: 284 NL 285 + Sbjct: 316 PV 317 >gi|237730616|ref|ZP_04561097.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp. 30_2] gi|226906155|gb|EEH92073.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp. 30_2] Length = 403 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 282 KKLLTWGFRFFETVNPLKVGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 341 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 342 VLNTTELHAPLQKNQVVGTINFQLDGKTIEQR 373 >gi|312171708|emb|CBX79966.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora ATCC BAA-2158] Length = 411 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 141/302 (46%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 76 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+ Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 256 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 315 Query: 284 NL 285 + Sbjct: 316 PV 317 >gi|332654526|ref|ZP_08420269.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332516490|gb|EGJ46096.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 383 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 21/348 (6%) Query: 1 MRQFLVIIAMAMLSN-----IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ ++ +L P L++ TG ++ E PAS Sbjct: 1 MKRIGSLVLAVLLLTGTASAQEAAAQSPLELSAPSAVLVEKETGTILYEKEAKRQMEPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT ++ L + +T+S A+ S K+G MT+ +K + V S Sbjct: 61 VTKVMTLLLIMEALDSGRISREDVVTVSARAAGMGGSQVYLKEGEQMTVGELIKCITVVS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VA+AE L +E FVQ MN ++ LG+ T+F+N G+ GH TTA D+A++S Sbjct: 121 GNDATVAMAEYLAGSESAFVQQMNQRAQKLGMEDTNFVNCTGLPASGHVTTAYDIALMSR 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + P Y I I+ + NTN V + GA G+KTG T ++ + + A+A Sbjct: 181 ELILNHPGIREYTTIWMDSIRDGAFGLTNTNRLVRFYEGATGLKTGSTDSALYCMSATAE 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + LIAV++ A R + + ++L GF Y + Y ++ +P + Sbjct: 241 RDGMELIAVVMAAPTAADRFEDAKAMLDYGF--------GAYTLMQVYPESPLAPIPVLL 292 Query: 294 EEVCTTQKEIINY------NTQMKEAKDKESHFIDFEKITLLKNKITK 335 V Q E+ + K + D E K+ + Sbjct: 293 GTVGQIQPELERECRVLVRKGEEGSVTTKLTLAQDLEAPVEAGQKVGE 340 >gi|320173897|gb|EFW49075.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC 74-1112] Length = 279 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 140/269 (52%), Gaps = 13/269 (4%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWAMGNPALRGSSVMFLKPGDQVSVADLNKGVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLS 261 QGD LI+V+LGA R S LL+ Sbjct: 251 TQGDMRLISVVLGAKTDRIRFNESEKLLT 279 >gi|262394994|ref|YP_003286848.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|262338588|gb|ACY52383.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 392 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 12/276 (4%) Query: 6 VIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++++ LS F ++A Y L+D ++G V+AE + +PASLT Sbjct: 10 ILVSSVALSATFAQSALASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+YV+ L +TISKNA S + G+T+ + + + +IV+ Sbjct: 70 KMMTSYVIGQELARGNISEDDDVTISKNAWAKNFPESSKMFIEVGTTVKVRDLNRGIIVQ 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E FV MN + LG++ +HF N HG+ Y+T DMA+L Sbjct: 130 SGNDACVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLG 189 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P + K G N N + + DG+KTG T +G+++V+SA Sbjct: 190 KALIRDVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSAT 249 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G L+AV++G D N R S LLS GF Sbjct: 250 EGQMRLVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|84516588|ref|ZP_01003947.1| Probable penicillin-binding protein [Loktanella vestfoldensis SKA53] gi|84509624|gb|EAQ06082.1| Probable penicillin-binding protein [Loktanella vestfoldensis SKA53] Length = 521 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 97/323 (30%), Positives = 157/323 (48%), Gaps = 5/323 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L + + P +A ++D TG V+ D +PASLTK+MT YV Sbjct: 13 LYFCVLIFILIAAPIRGVA---APYAALVMDARTGEVLHARNADTRLHPASLTKMMTLYV 69 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T +T++ +A+ PPS + G + L ++ V+SAND A AI Sbjct: 70 AFQAIERGEISLDTEVTVTSHAANEPPSKLGLRAGQRIRLRYLIRAAAVRSANDAATAIG 129 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 ++ +E+ F MN T+ +G+S T F NAHG+ Q GH +TARDM++L + DFPQY Sbjct: 130 IAISGSEEAFATRMNQTAAAMGMSNTTFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQY 189 Query: 185 MHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + +TN + ++ G DG+KTGFT ASGF++VASA +GDQ +IA + Sbjct: 190 YNLFSRRTADAGVATVQHTNRRWLDSYPGGDGIKTGFTNASGFSLVASAQRGDQRIIATV 249 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-EEVCTTQKE 302 G RN + L+ MGF +N + + + + + + Sbjct: 250 FGGTSTAARNARISELMDMGFSTAPRSANVNRPTPPGAMAEAPADGSVAAGDSLRGSAGK 309 Query: 303 IINYNTQMKEAKDKESHFIDFEK 325 +I N + + + + Sbjct: 310 VIRVNGLVTRSYRPVGRPVTAQP 332 >gi|213583748|ref|ZP_03365574.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 401 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 40 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 99 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 100 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 159 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 160 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 219 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 220 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 279 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 280 KKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 339 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 340 VLNTAELHAPLQKNQVVGTINFQLDGKTIEQR 371 >gi|149203254|ref|ZP_01880224.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. TM1035] gi|149143087|gb|EDM31126.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. TM1035] Length = 465 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 4/283 (1%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 + I P ++A ++D G V+ N D +PASLTK+MT YVVF ++ Sbjct: 1 MLVIVPLSAVA---APYAALVMDARNGEVLYSNNADTRLHPASLTKMMTLYVVFEAIENG 57 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + L + ISK+A+ PPS + GS++ L ++ VKSAND A A+ E++ +E Sbjct: 58 EIGLDDKVVISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSEA 117 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 +F + MN T++ LG++ T F NAHG+ ++GH +TARDM IL + DFPQY + F Sbjct: 118 QFARRMNRTAEALGMTRTTFKNAHGLTENGHLSTARDMTILGRHLFYDFPQYYNLFSRIT 177 Query: 193 LEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + +TN + + GADG+KTG+T A+GFN+ ASA + + +IA + G + Sbjct: 178 TDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTAS 237 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 RN A LL +GF + ++ + Y L I+ Sbjct: 238 RNAKVAELLDLGFNKAPTQVAVHRPARPPYLGKLGTAPVMIAA 280 >gi|332971504|gb|EGK10454.1| serine-type D-Ala-D-Ala carboxypeptidase [Kingella kingae ATCC 23330] Length = 432 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 19/289 (6%) Query: 1 MRQFLVIIAMAML------------------SNIFPFLSIA-ETNKLPYYTLLDTNTGHV 41 M++ L I+ L S P SI K Y + D +G + Sbjct: 36 MKKILSILICTTLLHTPVWANTASEPNVQAASAPVPLSSIQLPEIKAVAYLVQDLQSGQI 95 Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101 +A+ D PASLTK+MTAY+VF L+ KK S++A S + G Sbjct: 96 LAQANADQKIEPASLTKVMTAYLVFQALENKKITPDQTTKTSEHAWRQAGSRMFLELGKP 155 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 +++ + + L+V+ AND AV++AE L +E +FV MN +K LG++ THF NA G+ Sbjct: 156 VSVQDLVHGLVVQLANDAAVSLAELLAGSEAEFVALMNAEAKRLGMTNTHFDNATGLSSQ 215 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221 H TT +D+AILS + DFPQY + K N N + DG+ G+T Sbjct: 216 THLTTVKDLAILSNALIRDFPQYYKIYSTKSFTYNTITQQNRNLLLFRDDNIDGLAAGYT 275 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + G+N++AS+ + + +++++ GA +R S+ LL+ N + Sbjct: 276 NSGGYNLIASSKRDGRRVLSIVAGAASAESRATESSKLLNYALLNFDTQ 324 >gi|260582057|ref|ZP_05849852.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127] gi|260094947|gb|EEW78840.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127] Length = 393 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFAALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|28897493|ref|NP_797098.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260876429|ref|ZP_05888784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|28805705|dbj|BAC58982.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308091621|gb|EFO41316.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|328472498|gb|EGF43361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 392 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 132/271 (48%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V ++ + F + A Y L+D ++G V+AE + +PASLTK+MT+ Sbjct: 15 VALSATFAQSAFASPVVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L +TISKNA S + G+T+ + + + +I++S ND Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + LG+ +HF N HG+ Y+T DMA+L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYSTPYDMALLGKALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPDEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G D N R S LLS GF Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|254251303|ref|ZP_04944621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa AUO158] gi|124893912|gb|EAY67792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa AUO158] Length = 460 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 134/268 (50%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 89 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 148 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 149 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 208 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ ++ LG+ +THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 209 AQFVTMMNDEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 268 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 + + N N + DG+KTG T A+G+ +++SA + + L+AV++ Sbjct: 269 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLISSAKRAIPGTADAQRRLVAVMM 328 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 329 GEPKESDRTQDSMKMLNYGYSAFDAVRL 356 >gi|301154770|emb|CBW14233.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Haemophilus parainfluenzae T3T1] Length = 395 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 12/282 (4%) Query: 1 MRQFLVIIAMAMLSNIFPF------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 +++ ++ + S +++ E N Y L+D N+G V+A PD PA Sbjct: 8 LKKIVLFSGLMAASTFAAAEDLQYGIAVPEVN-AQTYVLMDYNSGAVLASLNPDQRQYPA 66 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLL 111 SLTK+MT+YVV + LK+ K +TI ++A S +++ + K + Sbjct: 67 SLTKMMTSYVVGAALKQGKIHNEDMVTIGESAWGRNFPDSSKMFLNLNQQVSVGDLNKGI 126 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I+ S ND VA+AE + T FV MN + GL T+F HG+ Y+TARDMA Sbjct: 127 IIVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMA 186 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 I+ I D P+ + K K PN N + + DGMKTG T +G+N+VA Sbjct: 187 IIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVA 246 Query: 231 SAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 SA + LI+V++G R S LL GF N K Sbjct: 247 SATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLK 288 >gi|300816637|ref|ZP_07096858.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] gi|300530867|gb|EFK51929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 107-1] Length = 347 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 10/301 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D TG ++ NPASLTKLMT YVV + + +T+ ++A Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF HG+ G +++A D+A+LS I P++ H + K L G N N + Sbjct: 121 KGTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 T + ++ K ++ + NI T++E + + K + +D +++ Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENID---LGTEQEFWMVLPKAEIPHIKAKYTLDGKEL 297 Query: 327 T 327 T Sbjct: 298 T 298 >gi|321311824|ref|YP_004204111.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|320018098|gb|ADV93084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 389 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 165/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + ++ F + A+ ++ L++ +TG V+ + Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FVQ MN +K LGL T F N G+ + GHY++A DMA Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVQKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 I++ + ++ ++ ++ K NTN + + G DG+KTG+T + + Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQ 282 + ASA +G+ IAV+ GA RN +L F R + +K Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E+ SE + K+ + N KE K K++ +K L + KK Sbjct: 301 KQKFIELTT-SEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353 >gi|260427958|ref|ZP_05781937.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45] gi|260422450|gb|EEX15701.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45] Length = 519 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 156/280 (55%), Gaps = 5/280 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I+A+ ML+ P +IA ++D +G V+ D P +PASLTK+MT Y+ Sbjct: 16 FILAIVMLA-AMPLSAIAAPF---AAMVMDARSGEVLHSENADTPLHPASLTKMMTLYIA 71 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + + + +T+S+NA+ PPS ++G + L ++ VKSAND A AI E Sbjct: 72 FEAVEHGEITMDSVVTVSRNAASEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGE 131 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 ++ +E F + MN T+K LG++ + F NA+G+ + GH +TARDM+IL + D+PQY Sbjct: 132 AIAGSEAAFARRMNRTAKALGMTRSTFKNANGLTESGHMSTARDMSILGRHMVYDYPQYY 191 Query: 186 HYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + F ++ NTN +G++ GADG+KTG+T A+GFN+VASA +G + +I + Sbjct: 192 NLFSRISTSAGVREVANTNRRFLGSYKGADGIKTGYTRAAGFNLVASAERGQERVITTVF 251 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G RN A L+ +GF R + Y N Sbjct: 252 GGASTAARNAKVAQLMDLGFKRAKTRVALRKPGLPPYLGN 291 >gi|28199163|ref|NP_779477.1| penicillin-binding protein 6 precursor [Xylella fastidiosa Temecula1] gi|182681894|ref|YP_001830054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23] gi|28057261|gb|AAO29126.1| penicillin-binding protein 6 precursor [Xylella fastidiosa Temecula1] gi|182632004|gb|ACB92780.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23] gi|307578148|gb|ADN62117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 396 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 16/321 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 + ++D +G V+A PASLTK+MT+YV+ + +K K + +++NA Sbjct: 47 WVVMDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKG 106 Query: 89 ---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ + Sbjct: 107 GAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRI 166 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+ +HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N Sbjct: 167 GMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNL 226 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 227 LLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFR 286 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEV-----CTTQKEIIN-YNTQMKEAKD---- 315 + +V + V T Q+ N ++ ++ Sbjct: 287 FFETHTLYEPGKVVTKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKPSIEVPRNLEAP 346 Query: 316 -KESHFIDFEKITLLKNKITK 335 K + K+TL + + Sbjct: 347 IKPGQSVGKVKVTLDGKVVAQ 367 >gi|16272004|ref|NP_438202.1| penicillin-binding protein 5 [Haemophilus influenzae Rd KW20] gi|260580667|ref|ZP_05848494.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae RdAW] gi|1169208|sp|P44466|DACA_HAEIN RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd KW20] gi|260092729|gb|EEW76665.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae RdAW] Length = 393 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 146/340 (42%), Gaps = 5/340 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + + I K Sbjct: 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGK 350 >gi|327394408|dbj|BAK11830.1| penicillin-binding protein 6B precursor DacD [Pantoea ananatis AJ13355] Length = 364 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 140/313 (44%), Gaps = 10/313 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF + L+D TG V+ PD NPASLTKLMT YVV + +KK Sbjct: 1 MPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITR 60 Query: 77 TTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 +T+ K+A S K G +++ + + +I+ S ND VA+A+ + + Sbjct: 61 DDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGS 120 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FV+ MN+ + LGL+ THF HG+ G +++A DMA LS I P + ++ Sbjct: 121 QDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYRE 180 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K L G N N + L DG+KTG T +GFNI+AS + G LIAV++G Sbjct: 181 KTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSA 240 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 R + + LL G + + K + + T ++ + Sbjct: 241 KGREEQARKLLVWGQNTFDTVQLFHAGKKIGSEHVWYGNPHQVE---VGTANDVYLSLPR 297 Query: 310 MKEAKDKESHFID 322 + K + I+ Sbjct: 298 SEIPNVKAKYVIN 310 >gi|261341254|ref|ZP_05969112.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] gi|288316558|gb|EFC55496.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus ATCC 35316] Length = 403 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL +HF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVTALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDNSLNVDGIKTGHTEKAGYNLVASATEGQMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVNPLKAG-KEFASEPV 309 >gi|310766969|gb|ADP11919.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia sp. Ejp617] Length = 411 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 18/302 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +A+ N+ + Y L+D N+G V+AE D Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 76 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K +T+ K+A S K G + + Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+ Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDADGQYS 196 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P + K + N N + T L DG+KTG T ++ Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 256 Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 G+N+VASA +G LI+ ++G R S LL+ GF + K+F + Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAG-KEFASE 315 Query: 284 NL 285 + Sbjct: 316 PV 317 >gi|260461659|ref|ZP_05809906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259032729|gb|EEW33993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 387 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 182/331 (54%), Gaps = 11/331 (3%) Query: 2 RQFLVIIAM-AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R FL + + A++ ++ ++A + D +G ++ W PASL+KLM Sbjct: 4 RHFLKLFSAGAIMLSVLAGPTLANPV-----VVFDLKSGQILQHQDAFKRWYPASLSKLM 58 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA Sbjct: 59 TAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+ E++ ++ F + MN + LG++ THF+N +G+ YTTARD+A+L I+ + Sbjct: 119 MAVGENIGGSQAAFAERMNAEAVRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRRE 178 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+ Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 AV+LG +R + +A LL GF + + N ++ +EVC + Sbjct: 239 AVVLGEKSAVSRAEAAARLLDQGFGAPAAGSATVATLAPYGDTVSPN---DMHDEVCKKK 295 Query: 301 KEIINYNTQMKEAKD--KESHFIDFEKITLL 329 AKD K + + + + L Sbjct: 296 TPEEQSEAPPALAKDVPKSPYQVKLDHVPTL 326 >gi|163759954|ref|ZP_02167038.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43] gi|162282912|gb|EDQ33199.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43] Length = 371 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 114/282 (40%), Positives = 172/282 (60%), Gaps = 2/282 (0%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +D +G VIA W PASLTK+MTAYV FS +K + + TP+T+S +A++ PP Sbjct: 6 IAVDVGSGRVIAHEDAFQRWYPASLTKIMTAYVAFSAVKSGQMSMDTPVTMSIHAAKEPP 65 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK G LD+ALK L+VKSAND+AVAIAE++ +E+ FV+ MN T+K LG+ AT Sbjct: 66 SKMYFKPGERFPLDSALKYLMVKSANDVAVAIAEAVSGSEEAFVREMNATAKALGMQATR 125 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+N +G+ G YTTARDMA+L+ + +FP+Y YF +G + + + N N +G F Sbjct: 126 FVNPNGLPGSGQYTTARDMAVLAAAARRNFPEYAQYFGYEGFSVGKQVHTNYNLLIGRFQ 185 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN V+SA + +++++V+LGA + R + SA+LL + Sbjct: 186 GADGMKTGFICASGFNQVSSATRNGRTVVSVVLGAPSQTARAERSAALLQAALTSSGSVS 245 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 + + + + V +IS ++C+++ + + Sbjct: 246 PSLASLAPYGEGR--DAVADISAQICSSEARAARDKNRDENG 285 >gi|320158294|ref|YP_004190672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] gi|319933606|gb|ADV88469.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] Length = 387 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 144/293 (49%), Gaps = 15/293 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 M+ V + A+ +++ + A +P Y L+D ++G V+ D N Sbjct: 1 MKSI-VSLTSALCASVMALSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLN 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PASLTKLMTAYV + + + IS+NA S + G++++L++ + Sbjct: 60 PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 119 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD Sbjct: 120 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 179 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNI 228 +A L I D P + G N N + + DGMKTGFT +G+++ Sbjct: 180 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNKTDRKKINYIIKD 279 SA G+ LI+V++G+ ++R S LLS G F++ K N + D Sbjct: 240 ATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLAD 292 >gi|297183970|gb|ADI20090.1| d-alanyl-d-alanine carboxypeptidase [uncultured alpha proteobacterium EB080_L06A09] Length = 481 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 2/309 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L I +L + F ++ ++D TG V+ D +PASLTK+MT Y+ Sbjct: 3 LKAIRGFILVVVLLFTGVSVYGAPYAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYL 62 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ L + +S+NA+ PPS + G + + + ++ VKSAND A A+ Sbjct: 63 AFKAVESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALG 122 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E++ +E KF M +K LG+ T F NAHG+ GH +TARDM+IL + DFP Y Sbjct: 123 EAIAGSEVKFTTLMTAQAKALGMKRTTFKNAHGLTAKGHLSTARDMSILGRHLMYDFPDY 182 Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + + PNTN + + GADG+KTG+T A+GFN+V+SA +G++ +IA + Sbjct: 183 YNLFSRRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATV 242 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-SEEVCTTQKE 302 G +RN A LL MGF + I + N V I V Sbjct: 243 FGGRTWKSRNARVAELLDMGFNRTPKKYTSTAIPARPTRGNQLESVALILPGNVSIKSPR 302 Query: 303 IINYNTQMK 311 II+ + + K Sbjct: 303 IISSSPRPK 311 >gi|162149241|ref|YP_001603702.1| D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|161787818|emb|CAP57416.1| putative D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 423 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 1/266 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F + + A + F + A+ ++D TG +++++ PD PASLTKLMT Sbjct: 79 SFALSVGCAAVMAGFVPRAHAQYVGQISSIVMDARTGAILSQSNPDLQRFPASLTKLMTL 138 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F L + L + +S +++ PS GS +T++ A+ L+ KSAND A A Sbjct: 139 YLAFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACA 198 Query: 123 IAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 + E + ++ F M ++ LG++ T F NA G+ T+ARD+A+L+ +I T+F Sbjct: 199 LGELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEF 258 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P Y HYF + G++ PN + + + GADG+KTG+T +G N+V SAI+ + LI Sbjct: 259 PDYYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIG 318 Query: 242 VILGALDRNTRNKVSASLLSMGFYNK 267 V+LGA R+ V AS+L GF + Sbjct: 319 VVLGARTNPQRSAVMASILDDGFRQE 344 >gi|307728308|ref|YP_003905532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1003] gi|307582843|gb|ADN56241.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1003] Length = 409 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 15/340 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++ ++S+ + L+D + V+A PD PASLTKLMTAY+V Sbjct: 30 VVLPATLVSSAAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + +T + S + +T+ + + +IV+S ND A+A+ Sbjct: 90 FEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 149 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MN ++ LG++ THF + +G+ HYTTA D+A+LS R+ DFP Sbjct: 150 AELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE 294 + L++V++G + R + S +L+ G+ + K + ++ S + I Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKASQVVGTPRVYKGSQDTVQIGV 329 Query: 295 E----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q+++ + + +++ K Sbjct: 330 KSDQYITVPKGMADKVKPQIEQIDPLIAPIANGQQVGTAK 369 >gi|328471030|gb|EGF41941.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 389 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 134/278 (48%), Gaps = 13/278 (4%) Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPW 51 MR+ FL +A + +L Y L+D +TG V+ E D Sbjct: 1 MRKNTLFNTTFLTSLATFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV + L + IS+NA S + ++++L + Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + SA GD LIAV++GA ++ R S LLS GF Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFR 278 >gi|327485477|gb|AEA79883.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4] Length = 389 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|319778852|ref|YP_004129765.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9] gi|317108876|gb|ADU91622.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9] Length = 430 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 133/243 (54%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + + ++D +G +IA+ PD PASLTKLMT+ +VF +K+K+ L + +S+ A Sbjct: 85 DVKSWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERA 144 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S +T+ L+ +IV+S ND ++ +AES+ T FV+ MN++ + Sbjct: 145 WKTGGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFH 204 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF + G+ YTTARD+++L+ I DFPQ+ HYF + NTN Sbjct: 205 MLNSHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGL 264 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +G G DG+KTG T +G+ +V S + ++ ++ +++GA R ++S L+ F N Sbjct: 265 LGKIEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWTFQN 324 Query: 267 KTD 269 + Sbjct: 325 FVN 327 >gi|143439|gb|AAA22704.1| DD-carboxypeptidase [Bacillus subtilis] Length = 389 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + ++ F + A+ ++ L++ +TG V+ + Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 I++ + ++ ++ ++ K NTN + + G DG+KTG+T + + Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQ 282 + ASA +G+ IAV+ GA RN +L F R + +K Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E+ SE + K+ + N KE K K++ +K L + KK Sbjct: 301 KQKFIELTT-SEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353 >gi|121592706|ref|YP_984602.1| penicillin-binding protein 6 [Acidovorax sp. JS42] gi|120604786|gb|ABM40526.1| penicillin-binding protein 6 [Acidovorax sp. JS42] Length = 387 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%) Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPA 54 M+ L + +A + + P + A+ + P Y L+D G V+A D P A Sbjct: 1 MKSLLSSLRTLACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMT Y+VF L+ KK L + +S+ A + P S + +D+ LK +IV+ Sbjct: 61 SLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + T + FV+ MN +K LG++ T + N G+ + GH TTARD+A L+ Sbjct: 121 SGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 R+ DFP+YMHY+ K +G N N + DG+KTG T A+G+ +VA+ Sbjct: 181 TRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVAT 240 Query: 232 AIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + G + L++++LGA N R S LL+ G+ K + Sbjct: 241 SKREFPNVGQRRLLSIVLGAASENARANESQKLLNWGYTAFDSVKLFD 288 >gi|269965477|ref|ZP_06179596.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269829956|gb|EEZ84186.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 392 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 12/276 (4%) Query: 6 VIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++++ LS F ++A Y L+D ++G V+AE + +PASLT Sbjct: 10 ILVSSVALSATFAQSALASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+YV+ L +TISKNA S + G+T+ + + + +IV+ Sbjct: 70 KMMTSYVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIVQ 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + +E FV MN + LG++ +HF N HG+ Y+T DMA+L Sbjct: 130 SGNDACVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLG 189 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 + D P + K G N N + + DG+KTG T +G+++V+SA Sbjct: 190 KALIRDVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSAT 249 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G L+AV++G D N R S LLS GF Sbjct: 250 EGQMRLVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|156934847|ref|YP_001438763.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter sakazakii ATCC BAA-894] gi|156533101|gb|ABU77927.1| hypothetical protein ESA_02695 [Cronobacter sakazakii ATCC BAA-894] Length = 428 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 17/290 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ V A+++ + + Y L+D N+G V+AE D Sbjct: 34 MQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYNSGKVLAEQNADAR 93 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTL 104 +PASLTK+MT+YV+ +K K + +TI +A S K G + + Sbjct: 94 RDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPV 153 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 ++ + ++S ND VA+A+ + ++ FV MN+ LGL THF HG+ G Y Sbjct: 154 SQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQY 213 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCA 223 ++ARDMA++ + D P ++ K G + N N + L DG+KTG T Sbjct: 214 SSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDK 273 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G+N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 274 AGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL 323 >gi|145629114|ref|ZP_01784913.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae 22.1-21] gi|144978617|gb|EDJ88340.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae 22.1-21] Length = 393 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 146/340 (42%), Gaps = 5/340 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + + ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + + I K Sbjct: 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGK 350 >gi|222109487|ref|YP_002551751.1| serine-type d-ala-d-ala carboxypeptidase [Acidovorax ebreus TPSY] gi|221728931|gb|ACM31751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax ebreus TPSY] Length = 387 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 151/288 (52%), Gaps = 14/288 (4%) Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPA 54 M+ L + A + + P + A+ + P Y L+D G V+A D P A Sbjct: 1 MKSLLSSLRTFACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTKLMT Y+VF L+ KK L + +S+ A + P S + +D+ LK +IV+ Sbjct: 61 SLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + T + FV+ MN +K LG++ T + N G+ + GH TTARD+A L+ Sbjct: 121 SGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 R+ DFP+YMHY+ K +G N N + DG+KTG T A+G+ +VA+ Sbjct: 181 TRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVAT 240 Query: 232 AIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + G + L++++LGA N R S LL+ G+ K + Sbjct: 241 SKREFPNVGQRRLLSIVLGAASENARANESQKLLNWGYTAFDSVKLFD 288 >gi|56963557|ref|YP_175288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56909800|dbj|BAD64327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 388 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 165/349 (47%), Gaps = 41/349 (11%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPW 51 M++ + ++ +L + A+ +LP L++ +TG V+ E D+ Sbjct: 1 MKRKWNVSMLLFVLLFAYAGEAAFAKEKELPQLAENAASAILIERDTGEVLFEKDSDNML 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ ++E +T+S+NA+ S + G M++D+ LK + Sbjct: 61 PPASMTKIMTMLLIMEAIEEGTIKYEDMVTVSENAASMGGSQVFLEPGEEMSVDDLLKAI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND AVA+AE + TE++FV+ MN + LGL T F N +G+ + HY++A D+A Sbjct: 121 AIASGNDAAVAMAEHIGGTEQEFVKMMNAKAAELGLENTQFQNPNGLPEADHYSSAHDLA 180 Query: 172 ILSWRI-----KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 +++ + T + + KG + K NTN V + G DG+KTGFT + + Sbjct: 181 VMAKELLKYENITSYTGIYEDYLRKGTD-KEFWLVNTNKLVKFYPGVDGLKTGFTQEAKY 239 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + A+A + +IAV++GA RN ++L + + + + + +L Sbjct: 240 GLTATAEKNGMRVIAVVMGAKTPKERNATITNMLDYSYSHYSTERL-------HERGDLI 292 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 EVP I KD+ I E ++LL K TK Sbjct: 293 GEVPVIK-------------------GKDRHVQAITPEPVSLLLKKGTK 322 >gi|157146752|ref|YP_001454071.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter koseri ATCC BAA-895] gi|157083957|gb|ABV13635.1| hypothetical protein CKO_02526 [Citrobacter koseri ATCC BAA-895] Length = 403 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 282 KKLLTWGFRFFETVNPL 298 >gi|309972837|gb|ADO96038.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Haemophilus influenzae R2846] Length = 393 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVFAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|16764014|ref|NP_459629.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179236|ref|YP_215653.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615147|ref|YP_001589112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550827|ref|ZP_02344583.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990643|ref|ZP_02571743.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231649|ref|ZP_02656707.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236628|ref|ZP_02661686.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240484|ref|ZP_02665416.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264432|ref|ZP_02686405.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465811|ref|ZP_02699693.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823261|ref|ZP_02835261.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442745|ref|YP_002039879.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448720|ref|YP_002044671.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471751|ref|ZP_03077735.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736722|ref|YP_002113755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250303|ref|YP_002145612.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245247|ref|YP_002214626.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389790|ref|ZP_03216401.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930599|ref|ZP_03221529.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351925|ref|YP_002225726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856103|ref|YP_002242754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582473|ref|YP_002636271.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911587|ref|ZP_04655424.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419149|gb|AAL19588.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62126869|gb|AAX64572.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364511|gb|ABX68279.1| hypothetical protein SPAB_02915 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401408|gb|ACF61630.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407024|gb|ACF67243.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458115|gb|EDX46954.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712224|gb|ACF91445.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631937|gb|EDX50457.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214006|gb|ACH51403.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290404|gb|EDY29760.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939763|gb|ACH77096.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602235|gb|EDZ00781.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320533|gb|EDZ05736.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271706|emb|CAR36537.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324158|gb|EDZ11997.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331044|gb|EDZ17808.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334030|gb|EDZ20794.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339760|gb|EDZ26524.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340474|gb|EDZ27238.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347141|gb|EDZ33772.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707906|emb|CAR32194.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467000|gb|ACN44830.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245910|emb|CBG23711.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992371|gb|ACY87256.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157238|emb|CBW16725.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911668|dbj|BAJ35642.1| D-alanyl-D-alanine carboxypeptidase DacA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084907|emb|CBY94697.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226217|gb|EFX51268.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613231|gb|EFY10174.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621299|gb|EFY18156.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623719|gb|EFY20557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628991|gb|EFY25770.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631713|gb|EFY28467.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637551|gb|EFY34253.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641891|gb|EFY38521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646735|gb|EFY43241.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651436|gb|EFY47816.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653113|gb|EFY49447.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658833|gb|EFY55088.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664897|gb|EFY61090.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668899|gb|EFY65051.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670595|gb|EFY66728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675336|gb|EFY71412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682193|gb|EFY78218.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684977|gb|EFY80974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713701|gb|EFZ05272.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128954|gb|ADX16384.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193964|gb|EFZ79166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197944|gb|EFZ83066.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202009|gb|EFZ87069.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207142|gb|EFZ92095.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210407|gb|EFZ95298.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214331|gb|EFZ99082.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221482|gb|EGA05896.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231084|gb|EGA15200.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234084|gb|EGA18173.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238221|gb|EGA22279.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242545|gb|EGA26569.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248478|gb|EGA32412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259234|gb|EGA42877.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261642|gb|EGA45217.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264824|gb|EGA48325.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272339|gb|EGA55746.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622381|gb|EGE28726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626964|gb|EGE33307.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987582|gb|AEF06565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 403 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 282 KKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 341 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 342 VLNTAELHAPLQKNQVVGTINFQLDGKTIEQR 373 >gi|213425100|ref|ZP_03357850.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289823664|ref|ZP_06543276.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 427 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 66 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 125 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 126 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 185 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 186 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 245 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 246 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 305 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 306 KKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 365 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 366 VLNTAELHAPLQKNQVVGTINFQLDGKTIEQR 397 >gi|16079405|ref|NP_390229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310266|ref|ZP_03592113.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. 168] gi|221314589|ref|ZP_03596394.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319512|ref|ZP_03600806.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. JH642] gi|221323788|ref|ZP_03605082.1| penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase) [Bacillus subtilis subsp. subtilis str. SMY] gi|34395963|sp|P38422|DACF_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacF; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein dacF; Short=PBP; Flags: Precursor gi|1303997|dbj|BAA12652.1| DacF [Bacillus subtilis] gi|2634783|emb|CAB14280.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 389 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + ++ F + A+ ++ L++ +TG V+ + Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 I++ + ++ ++ ++ K NTN + + G DG+KTG+T + + Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQ 282 + ASA +G+ IAV+ GA RN +L F R + +K Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E+ SE + K+ + N KE K K++ +K L + KK Sbjct: 301 KQKFIELTT-SEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353 >gi|187731390|ref|YP_001879357.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii CDC 3083-94] gi|187428382|gb|ACD07656.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC 3083-94] Length = 403 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 17/301 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPSVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQTMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G+N+VASA +G LI+ ++G R S LL+ GF + + K+F + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL-KVGKEFASEP 308 Query: 285 L 285 + Sbjct: 309 V 309 >gi|16759596|ref|NP_455213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142631|ref|NP_805973.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414228|ref|YP_151303.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363151|ref|YP_002142788.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|25297769|pir||AH0580 D-alanine carboxypeptidase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501888|emb|CAD05114.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138262|gb|AAO69833.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128485|gb|AAV77991.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094628|emb|CAR60150.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 282 KKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 341 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 342 VLNTAELHAPLQKNQVVGTINFQLDGKTIEQR 373 >gi|27379630|ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] gi|27352782|dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] Length = 451 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 140/291 (48%), Gaps = 6/291 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P L++ ++G V+ E D P+S+ KLMTA VVF+ +++ LT IS+NA Sbjct: 89 DAPTAILIEASSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENA 148 Query: 87 SE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140 S S +++D+ L I++S ND +A+AE++ E+ F M Sbjct: 149 WRKGGAPSGGSTMFAAINSKVSVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTK 208 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG++ + F N++G+ G+ T R++ IL+ I DFP++ F K + Sbjct: 209 RARELGMTKSTFGNSNGLPDPGNKMTVRELGILARHIILDFPEFYKLFGEKEYTWNKIRQ 268 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 PN N + + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L Sbjct: 269 PNRNPLLNSMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 328 Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 GF N R I Y + E ++ T K +++ N K Sbjct: 329 EWGFRNFETRTLIAADQPVGYAKVFGGESRSVKLIAKTPVKVMVHKNGSDK 379 >gi|77359968|ref|YP_339543.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas haloplanktis TAC125] gi|76874879|emb|CAI86100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Pseudoalteromonas haloplanktis TAC125] Length = 387 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/264 (33%), Positives = 134/264 (50%), Gaps = 4/264 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ + A+ S + Y L+D TG VIA+ D PASLTK+MT+YV+ Sbjct: 15 LVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAQGEADTKLAPASLTKMMTSYVI 74 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K T +T+S+ A S + G +++D+ +I++S ND VA Sbjct: 75 GTEVKAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDDLNHGIIIQSGNDACVA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN + LG+S THF+N+HG+ HYTT RDMA L + D P Sbjct: 135 MAEHIAGSESAFADLMNAHAAKLGMSNTHFINSHGLDTDAHYTTPRDMATLGGALIRDVP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 ++ K G K N N + L DG+KTG T +G+++V SA + D LIA Sbjct: 195 DEYALYKKKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSDAGYSLVTSATKNDMRLIA 254 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 V++G R + S LL+ GF Sbjct: 255 VVMGTSSERARKEESKKLLNYGFR 278 >gi|319781232|ref|YP_004140708.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167120|gb|ADV10658.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 387 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 175/317 (55%), Gaps = 9/317 (2%) Query: 2 RQFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R FL + + ++ ++ ++A + D +G ++ W PASL+KLM Sbjct: 4 RHFLKLFSAGTIALSVVAGPALANPV-----VVFDLGSGKILQHQDAFKRWYPASLSKLM 58 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA Sbjct: 59 TAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+ E++ ++ F MN + LG++ THF+N +G+ YTTARD+A+L I+ + Sbjct: 119 MAVGENVGGSQAAFADRMNAEATRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRRE 178 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY+ +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+ Sbjct: 179 FPQYVPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 AV+LG TR + +A LL GF + + N ++ +EVC + Sbjct: 239 AVVLGEKSAVTRAETAAKLLDQGFDTPVAGSATVTTLAPYGDTVSPN---DMQDEVCKKK 295 Query: 301 KEIINYNTQMKEAKDKE 317 AK+ Sbjct: 296 TPQEQSEAPPAAAKNVP 312 >gi|74095596|emb|CAJ27362.1| strongly similar to penicillin-binding protein 5 precursor [Cronobacter sakazakii] Length = 404 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 17/290 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ V A+++ + + Y L+D N+G V+AE D Sbjct: 10 MQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYNSGKVLAEQNADAR 69 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTL 104 +PASLTK+MT+YV+ +K K + +TI +A S K G + + Sbjct: 70 RDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPV 129 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 ++ + ++S ND VA+A+ + ++ FV MN+ LGL THF HG+ G Y Sbjct: 130 SQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQY 189 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCA 223 ++ARDMA++ + D P ++ K G + N N + L DG+KTG T Sbjct: 190 SSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDK 249 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G+N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 250 AGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPL 299 >gi|170691583|ref|ZP_02882748.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis C4D1M] gi|170143788|gb|EDT11951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis C4D1M] Length = 409 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 15/340 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++ ++++ + L+D + V+A PD PASLTKLMTAY+V Sbjct: 30 VVLPATLVASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + +T + S + +T+ + + +IV+S ND A+A+ Sbjct: 90 FEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 149 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP Sbjct: 150 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 210 YYNIFSVKDFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE 294 + L++V++G + R + S +L+ G+ + K N ++ + + I Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTARLYKANQVVGTPRVYKGAQDTVQIGV 329 Query: 295 E----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q+++ + + +++ K Sbjct: 330 KSDQYITVPKGMADKVKPQIEQIDPLIAPIANGQQVGTAK 369 >gi|172061846|ref|YP_001809498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MC40-6] gi|171994363|gb|ACB65282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria MC40-6] Length = 437 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + IT S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 GQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 306 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 R + S +L+ G+ + Sbjct: 307 EPKEGERTQDSMKMLNYGYSAFDAVRL 333 >gi|254478669|ref|ZP_05092040.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [Carboxydibrachium pacificum DSM 12653] gi|214035356|gb|EEB76059.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [Carboxydibrachium pacificum DSM 12653] Length = 333 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 22/333 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M+++ ++ + M F + S + ++D NTG V+ E AS TK Sbjct: 1 MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + + L +T+S+ A+ S+ G + +++ L +++ S ND Sbjct: 61 IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + T + FV+ MN +K +G THF+ G+ HYTTA D+A+++ Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDISIDDHYTTAYDLALITRY 175 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 ++P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 176 AFLNYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 SA + + IAV+L + + S +L F K ++ + + E Sbjct: 236 SATREGRRFIAVVLNSPPM---WEDSMKILDYAFSRF---KPFKVFERNDVVKKVKVEKG 289 Query: 291 NISEEVCTTQKEIINYNTQMKEAK-DKESHFID 322 I E +K+ I ++ + K + E H D Sbjct: 290 KIEEIEVAVEKDCIIPVSEEEIGKVNLEFHIPD 322 >gi|258623181|ref|ZP_05718190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] gi|258625506|ref|ZP_05720398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258582212|gb|EEW07069.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603] gi|258584479|gb|EEW09219.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573] Length = 413 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 137/278 (49%), Gaps = 11/278 (3%) Query: 3 QFLVIIAMAMLSNI--FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 +FL ++MA ++ + F ++ T + P Y L+D +TG ++ E NPAS Sbjct: 29 KFLFRLSMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPAS 88 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMTAYV +K + IS NA S + GS + L + + LI Sbjct: 89 LTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 148 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 149 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIAL 208 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P + G N N + + DGMKTG+T +G+++ +S Sbjct: 209 LGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 268 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A G+ LI+V++G+ R S LLS GF Sbjct: 269 ATSGEMRLISVVMGSKSVKIREAESKQLLSYGFRFFET 306 >gi|240950037|ref|ZP_04754345.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor NM305] gi|240295515|gb|EER46258.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor NM305] Length = 392 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 164/359 (45%), Gaps = 26/359 (7%) Query: 1 MRQFLV----IIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L+ + AMA+ S + ++ A Y L+D N+G V+A PD Sbjct: 1 MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 PASLTK+MTAYVV +K+ K + +T+++N+ S + +++ + + Sbjct: 61 YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K LI+ S ND AVA+AE +++ F+ MN ++ GL T+F HG+ +++AR Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAR 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMAI+ + D P+ + K + K PN N + + DGMKTG T +G+ Sbjct: 181 DMAIIGTHVIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQ 283 N+VASA + LI+V++G R S LL GF N K + I ++ Sbjct: 241 NLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQAIKEESVYY 300 Query: 284 NLSNEVP---------NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 +N+V I + K +T+ EA + + L + Sbjct: 301 GDANKVQLGSVQDSFITIPKGKSADLKARYELDTKSLEAPLAKGQVVGKVIYQLDGKDV 359 >gi|283834062|ref|ZP_06353803.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] gi|291070205|gb|EFE08314.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC 29220] Length = 403 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 282 KKLLTWGFRFFETVNPLKVGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 341 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 342 VLNTTELHAPLQKNQVVGTINFQLDGKTIEQR 373 >gi|75676866|ref|YP_319287.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74421736|gb|ABA05935.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 455 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 176/306 (57%), Gaps = 12/306 (3%) Query: 2 RQFL---VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 R++L +++A L + P ++ T + L++ +TG V+ PW PAS+TK Sbjct: 9 RKWLPTCIVLAAVALVTLAPSRTVHATE---AHLLIEADTGKVLEAENATFPWYPASVTK 65 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAYV + +K+K+ L T +T+S A+ PS F+ G+ +T+DNALK+++VKSAND Sbjct: 66 LMTAYVTLTAVKQKRLTLDTLLTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMMVKSAND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +AV +AE + + F MN ++ LG++ + ++N +G+ G ++ARDMAIL+ Sbjct: 126 MAVVLAEGVGGSIDGFSAEMNAAAQRLGMTQSSYVNPNGLPADGQISSARDMAILARAFI 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+Y ++ I + + N N +G F GADG KTGF CASG+N+VASA Q + Sbjct: 186 HDLPEYEYFVHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKR 245 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNISEE 295 LIAV+LGA R +A +L GF N + R + + + ++ PN+ +E Sbjct: 246 LIAVVLGASSGTMRAVRAAQMLERGFANNSLSWLRPALGTVDR---LAPIAATPPNLRDE 302 Query: 296 VCTTQK 301 +C ++ Sbjct: 303 MCGPKR 308 >gi|213646564|ref|ZP_03376617.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 427 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 66 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 125 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 126 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 185 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 186 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 245 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 246 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 305 Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQ--------KEII 304 LL+ GF + + + + N + ++V T K Sbjct: 306 KKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASY 365 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 NT A +++ + L I ++ Sbjct: 366 VLNTAELHAPLQKNQVVGTINFQLDGKTIEQR 397 >gi|145639682|ref|ZP_01795285.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII] gi|145271239|gb|EDK11153.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII] gi|309750652|gb|ADO80636.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 [Haemophilus influenzae R2866] Length = 393 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 93/338 (27%), Positives = 145/338 (42%), Gaps = 5/338 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+ Sbjct: 13 SFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTS 72 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YVV LK+ K T +TI ++A S + +++ + + +IV S ND Sbjct: 73 YVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDA 132 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 133 TVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIR 192 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQGDQ 237 D P+ + K K N N + + DGMKTG T +G+N+VASA + Sbjct: 193 DLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNM 252 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 253 RLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAL 312 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + + I K Sbjct: 313 MDHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGK 350 >gi|167759038|ref|ZP_02431165.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704] gi|167663445|gb|EDS07575.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704] Length = 435 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 156/333 (46%), Gaps = 21/333 (6%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 P L++ +TG +I E D PAS+TK+MT ++F L K L ++ Sbjct: 76 AGPQVGAPSAILMEASTGQIIYEKDADEQRPPASVTKIMTLLLIFDALDSGKISLKDEVS 135 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S+ A+ S + G T T+D +K + V SAND VA+AE +C E++FV+ MN Sbjct: 136 TSEYAASMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKQMNQR 195 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 +K LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I Sbjct: 196 AKGLGMENTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIHDYSMIWMENITHTTKK 255 Query: 200 ------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 NTN V + A G+KTG T + + + A+A + LIAVI+ A D R Sbjct: 256 GTTEFGLTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAKKDGMELIAVIMAAPDHKQRF 315 Query: 254 KVSASLLSMGFY--NKTDRKKINYIIKDFYQQNLSNEVP----------NISEEVCTTQK 301 + +LL+ GF NK + +K I + ++ V +I+ T + Sbjct: 316 TDATTLLNYGFGKCNKYEEEKAKSIQPAKVSRGVAETVKVRQKTPFAYVDITGADLKTIE 375 Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 N ++K K+ + K L +I Sbjct: 376 RKEALNKKIKAPV-KKGDKVGKAKYFLSGKEIG 407 >gi|153829019|ref|ZP_01981686.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39] gi|148875448|gb|EDL73583.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39] Length = 389 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|170704053|ref|ZP_02894691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria IOP40-10] gi|170131039|gb|EDS99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria IOP40-10] Length = 368 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 8/264 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D + V+A D PASLTKLMTAY+VF L +KK + Sbjct: 1 MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 60 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 IT S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 61 EQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 120 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K + Sbjct: 121 VTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFK 180 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALD 248 + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 181 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPK 240 Query: 249 RNTRNKVSASLLSMGFYNKTDRKK 272 R + S +L+ G+ + Sbjct: 241 EGERTQDSMKMLNYGYSAFDAVRL 264 >gi|163803893|ref|ZP_02197734.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] gi|159172307|gb|EDP57194.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4] Length = 392 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 132/271 (48%), Gaps = 7/271 (2%) Query: 6 VIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+ Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV+ L +TISKNA S + G+T+ + + + +I++S ND Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA L + Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTIGMKNTHFANVHGLDNPNLYSTPYDMAQLGKALIR 194 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G D N R S LLS GF Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFET 285 >gi|229514750|ref|ZP_04404211.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] gi|229348730|gb|EEO13688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21] Length = 389 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|153215272|ref|ZP_01949916.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] gi|124114811|gb|EAY33631.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587] Length = 389 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 138/274 (50%), Gaps = 11/274 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHTDDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 A G+ LI+V++G+ +R S LLS GF Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFR 278 >gi|319774981|ref|YP_004137469.1| penicillin-binding protein 5 [Haemophilus influenzae F3047] gi|317449572|emb|CBY85777.1| penicillin-binding protein 5 precursor [Haemophilus influenzae F3047] Length = 393 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 5/279 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + LI+V++G R S LL GF N K + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLE 289 >gi|323498490|ref|ZP_08103483.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] gi|323316379|gb|EGA69397.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] Length = 385 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 9/278 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ + + + F + P Y L+D +TG V+ E D NPAS Sbjct: 1 MRKPFFAVTLLTSVSFAGFAAPTIVPDPPVIGAKGYILMDYHTGAVLVEKNADSQLNPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMTAYV + L +TIS+ A S + G+ + L + + LI Sbjct: 61 LTKLMTAYVAGQEVANGNIGLDDQVTISERAWAKNFPDSSKMFIEVGTQVALSDLYRGLI 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ + LGL + F N HG+ Y+T RD+A Sbjct: 121 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAAKLGLENSAFSNPHGLDSDALYSTPRDIAT 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 LS I D P + + G N N + L DGMKTG+T +G+++ S Sbjct: 181 LSQAIIRDLPTIYPLYSERAFTYNGITQYNRNGLLRDRSLHVDGMKTGYTSGAGYSLATS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A G+ LI+V++G+ +R S LLS GF Sbjct: 241 ATNGNMRLISVVMGSSSTKSRESESKQLLSYGFRFFDT 278 >gi|49476281|ref|YP_034322.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49239089|emb|CAF28392.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 368 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 188/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ L + ++ + + L++A+ + +D TG ++ N W PASLTKLM Sbjct: 1 MQRLLYKLFLSFVLSFTSSLALAQP-----FISVDVKTGRILEHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + + ITIS+ A++ P S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSRGEISSNKHITISEYAAKAPTYRSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FV+ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAVAGSQKAFVKKMNAEAQRLGMFGTHFANASGLPDPNNYSTARDIALLAIQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K+ PN+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILG+ + + R K +A LL GF + + ++ + + ++ ++ CT Sbjct: 236 IIAVILGSKNISEREKKAAKLLETGFSRQGSLQLTLETLEPYGTKMTHAR--DMRQQTCT 293 Query: 299 TQKEIINYNTQMKEA 313 + +N N+ + Sbjct: 294 PEAVKMNANSYDDQG 308 >gi|149201815|ref|ZP_01878789.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035] gi|149144863|gb|EDM32892.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035] Length = 387 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 134/279 (48%), Gaps = 6/279 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR I A + + + A ++D TG V+ + D P PAS++KLM Sbjct: 1 MRLIRHIAAATLCLGV-ALPAQAFETSAKAAYVMDVTTGTVLLDKNADTPMPPASMSKLM 59 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T YV F ++ + L + +S++A Y S + +++ L+ +IV S ND Sbjct: 60 TLYVAFEAVRSGRLTLDERLPVSQHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDAC 119 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F + M ++ +G++ + F NA G GH + RD+A+L+ I Sbjct: 120 AVIAEALSPDGTEAGFARFMTQRAQQMGMTNSIFRNASGWPAEGHVMSMRDLALLARHII 179 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 DFP++ F G+ N N +G +GADG+KTG T +GF + SA QG Sbjct: 180 EDFPEFYPMFAETEFRFDGRAPSNISNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAKQG 239 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ ++ VI G R + S S+++ F ++ + Sbjct: 240 ERRVVFVISGLATAQDRARESESIVNWAFRQFAEKSVLT 278 >gi|306843463|ref|ZP_07476064.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] gi|306276154|gb|EFM57854.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] Length = 370 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176 Query: 181 FPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 177 FPQYAHYFATEAIDPGAGKKVQANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAETANLNQAV-DMRKAICS 295 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336 >gi|167579652|ref|ZP_02372526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis TXDOH] Length = 375 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 4 ATYAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDSKK 63 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 64 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 123 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 124 AQFVNMMNAQAQRLGMTHTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVK 183 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 184 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMM 243 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 244 GETKESDRVQDSMKMLNYGYTAFDSVRL 271 >gi|319406361|emb|CBI80002.1| penicillin-binding protein [Bartonella sp. AR 15-3] Length = 367 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 187/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MRQ + + + ++ L++A + +D TG ++ N W PASLTKLM Sbjct: 1 MRQLFHTLFFSFILSMIGSLTLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 YV+F + + ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A Sbjct: 56 MTYVIFRAMSTGEISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAISEAISGSQEAFVKQMNAEAQRLGMFGTNFTNTSGLPNPNNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYTHYFSIPAIDFGNGQKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILG+ N R + +A LL+ GF +K + ++ + + +++ ++ +++CT Sbjct: 236 IIVVILGSDSINKREEKAAELLNAGFSDKGSPQSTLATLEPYGTK--ISQITDMRQQICT 293 Query: 299 TQKEIINYNTQMKEA 313 + ++ ++ Sbjct: 294 PEAIKTRLDSYDEKG 308 >gi|222149991|ref|YP_002550948.1| penicillin-binding protein [Agrobacterium vitis S4] gi|221736973|gb|ACM37936.1| penicillin-binding protein [Agrobacterium vitis S4] Length = 366 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 114/285 (40%), Positives = 171/285 (60%), Gaps = 1/285 (0%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+ V+ W PASLTKLMTAY F L+ + L + +T+S A+ P Sbjct: 30 LVVDVNSLTVLEHQDSFKKWYPASLTKLMTAYTTFRALRAGEVRLDSVVTLSAFAASQAP 89 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK GS MTLD+ALK+++VKSANDIAVA+AE++ ++ FV MN + LG++++H Sbjct: 90 SKMFFKPGSKMTLDDALKMMLVKSANDIAVAVAENVGGSQAAFVARMNAEAARLGMTSSH 149 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+N +G+ G Y+TARD+A+L+ I+ +FP+Y YF+I+ ++ K YPN N VG F Sbjct: 150 FVNPNGLPAPGQYSTARDLAVLAVTIRREFPEYAGYFKIEAIDTGKKVYPNVNMLVGRFD 209 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DGMKTG+ CASGFN + SA + ++LI V++GA R +SA+LL F + Sbjct: 210 GVDGMKTGYICASGFNQITSATRNGRTLITVVMGADSLAARADISANLLQKYFDRPNAQG 269 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 + L N V ++S E+C+T+ T+ + + K Sbjct: 270 SRLSALGPDSVDGL-NAVNDVSAEMCSTEARKRRSETRDETGRMK 313 >gi|323702537|ref|ZP_08114200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323532511|gb|EGB22387.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 405 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 16/324 (4%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 L+D N+G V+ + PD AS+TKLMT ++ + K LT + S++ Sbjct: 55 TTAESAILMDYNSGQVLFQKDPDTRRPMASVTKLMTMLLICEAEAQGKIKLTDKVVASEH 114 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A S + G +T+ L + SAND +VA+AE + +E+ FV MN ++ + Sbjct: 115 ACSMGGSQIFLEPGEQLTIKEMLISIATGSANDASVAMAEQIAGSEEAFVAMMNEKAQAM 174 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNT 203 GL THF N G+ HYT+ARDMA + +P + +I +++G K NT Sbjct: 175 GLKNTHFSNPTGLPVENHYTSARDMAKVLRECLR-YPVFREVSKIYEYDLRGGEFKLWNT 233 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + + G D KTG+T + F + ASA + LI+V+LG T + + + + G Sbjct: 234 NKLLKWYPGTDAGKTGWTNEAKFCLAASAKRDGLRLISVVLGCPMPKTHFQETMKIFNYG 293 Query: 264 FY-----NKTDRKKINYIIK----DFYQQNLSNEVP---NISEEVCTTQKEIINYNTQMK 311 F N + ++ +IK D + + + P +++ T + IN ++K Sbjct: 294 FARYKAVNLAEEGQVIKVIKVDKGDLEKVKVITQAPVGLVVAKGQEKTVQGQINLPDKLK 353 Query: 312 EAKDKESHFIDFEKITLLKNKITK 335 K+ + +T ++ K Sbjct: 354 APV-KKGQVVGNYVVTKDGQELLK 376 >gi|254225957|ref|ZP_04919558.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] gi|125621491|gb|EAZ49824.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51] Length = 389 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVLPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|167037551|ref|YP_001665129.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115966|ref|YP_004186125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856385|gb|ABY94793.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929057|gb|ADV79742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 382 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 156/352 (44%), Gaps = 25/352 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ I + +S++ + + ++D TG V+ E P AS TK Sbjct: 4 MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT V K L +T+SK A+ S+ G + +++ L L++ S ND Sbjct: 64 IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++ Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 179 AFR-YPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287 SA + + IAV+L + + S +L F K + I K + N Sbjct: 238 SASREGRRFIAVVLNSPPM---WEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294 Query: 288 EVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V +SE C + E + N + K ++ EKI + KI ++ Sbjct: 295 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 346 >gi|84394380|ref|ZP_00993099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] gi|84374982|gb|EAP91910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] Length = 393 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 5/269 (1%) Query: 6 VIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A S P + A + L+D ++G V+AE + +PASLTK+MT+YV Sbjct: 18 LSATIATSSFAAPIVVPDAPKIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + L+ L + IS+NA S + G+T+ ++ + +I++S ND V Sbjct: 78 IGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDATV 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L + D Sbjct: 138 AMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDV 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + K G N N + + DG+KTG T +G+++V+SA +G L+ Sbjct: 198 PDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSKAGYSLVSSATEGKMRLV 257 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD 269 AV++G + N R S LLS GF Sbjct: 258 AVVMGTKNANARKTESKKLLSYGFRFFET 286 >gi|33152983|ref|NP_874336.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus ducreyi 35000HP] gi|33149208|gb|AAP96725.1| penicillin-binding protein 5 [Haemophilus ducreyi 35000HP] Length = 393 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 14/286 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSI---------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 ++ I++ L+ +++ A Y L+D N+G V+A P + Sbjct: 3 KRLFTSISLVALAFSHSAVAVDASVEFGISAPQLNAQTYVLMDYNSGAVLASLNPQQRQH 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSN-STFKKGSTMTLDNALK 109 PASLTK+MT+YVV +K+ K + +T+S+NA ++P S+ + +++ + ++ Sbjct: 63 PASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARKFPGSSLMFLDLNTQVSVADLMR 122 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 LI+ S ND AVA+AE +++ F+ MN + GL THF HG+ + Y++A D Sbjct: 123 GLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTHFTTVHGLDEESQYSSALD 182 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVG-TFLGADGMKTGFTCASGFN 227 MAI+ + D P+ + K + KK PN N + + DGMKTG T +G+N Sbjct: 183 MAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTNQAGYN 242 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +VASA + LI+V++G R S LL GF N K + Sbjct: 243 LVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSL 288 >gi|323524598|ref|YP_004226751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1001] gi|323381600|gb|ADX53691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1001] Length = 409 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 11/326 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++ + ++ + L+D + V+A PD PASLTKLMTAY+V Sbjct: 30 VVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + +T S+ S + +T+ + + +IV+S ND A+A+ Sbjct: 90 FEALQTKKIAMDQTVTPSEAVRRVRTDESRMFVEANKPVTVHDLVYGMIVQSGNDAAIAL 149 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MN ++ LG++ THF + +G+ HYTTA D+A+LS R+ DFP Sbjct: 150 AELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 + L++V++G + R + S +L+ G+ + Y + S ++ Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRL--YKANQVVGTPRVYKGAQDSVQI 327 Query: 297 CTTQKEIINYNTQMKEAKDKESHFID 322 + I M + + ID Sbjct: 328 GVKSDQYITVPKGMADKVKPQIDQID 353 >gi|209545022|ref|YP_002277251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209532699|gb|ACI52636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 420 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 146/264 (55%), Gaps = 2/264 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L + A+++ P ++ ++D TG +++++ PD PASLTKLMT Y+ Sbjct: 79 LSVGCAAVMAGFVPRAHAQYVGQISS-IVMDARTGAILSQSNPDLQRFPASLTKLMTLYL 137 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F L + L + +S +++ PS GS +T++ A+ L+ KSAND A A+ Sbjct: 138 AFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACALG 197 Query: 125 ESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E + ++ F M ++ LG++ T F NA G+ T+ARD+A+L+ +I T+FP Sbjct: 198 ELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEFPD 257 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y HYF + G++ PN + + + GADG+KTG+T +G N+V SAI+ + LI V+ Sbjct: 258 YYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIGVV 317 Query: 244 LGALDRNTRNKVSASLLSMGFYNK 267 LGA R+ V AS+L GF + Sbjct: 318 LGARTNPQRSAVMASILDDGFRQE 341 >gi|126725140|ref|ZP_01740983.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2150] gi|126706304|gb|EBA05394.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2150] Length = 452 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 4/313 (1%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M + P +IA ++D +G V+ D +PASLTK+MT YV F + Sbjct: 1 MLCALFLAPISAIA---APYAAMVIDARSGEVLHSRNADSRLHPASLTKMMTLYVTFEAI 57 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 ++ + L T + ISK A+ PPS + G + L ++ VKSAND A A+ E++ Sbjct: 58 RKGEISLDTRVRISKKAAAEPPSKLGLQAGQRIQLRYLIRAASVKSANDAATALGEAVSG 117 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E F + MN T+K LG+S T F NAHG+ + GH +TARDM L R+ D+PQY + F Sbjct: 118 SEAAFARRMNRTAKALGMSRTTFKNAHGLTESGHLSTARDMTTLGRRLFFDYPQYYNLFS 177 Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + KK NTN + ++ G+DG+KTG+T A+GFN+VASA++G++ +IA + G Sbjct: 178 RRTTDAGVKKVNNTNTRFLNSYRGSDGIKTGYTNAAGFNLVASAVRGNERIIATVFGGRS 237 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 RN A LL +GF K+ Y ++ + + + + + Sbjct: 238 TANRNAKVAELLDLGFRRAPSTSKVIKPNAPVYGNDVVAGGKGKTIRLVMAVNKSLRPKS 297 Query: 309 QMKEAKDKESHFI 321 + AK E I Sbjct: 298 RPITAKPTEETMI 310 >gi|238755056|ref|ZP_04616404.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] gi|238706760|gb|EEP99129.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC 29473] Length = 403 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 131/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKSGKIGPEDMVTVG 101 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFQGSSLMFLKPGDQVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL THF HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVNALGLKNTHFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA +G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|153803461|ref|ZP_01958047.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3] gi|124121011|gb|EAY39754.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3] Length = 389 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLXSS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|229522951|ref|ZP_04412365.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] gi|229527763|ref|ZP_04417154.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229334125|gb|EEN99610.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)] gi|229340168|gb|EEO05176.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80] Length = 389 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGNKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|312882711|ref|ZP_07742448.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369672|gb|EFP97187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC BAA-2122] Length = 392 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 133/269 (49%), Gaps = 5/269 (1%) Query: 6 VIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 V+ A + P + A Y L+D ++G V+AE +PASLTK+MT+YV Sbjct: 17 VLATTASSAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMHTKLSPASLTKMMTSYV 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + L L +TISKNA S + G+++ ++ + +I++S ND V Sbjct: 77 IGQELARGNISLQDDVTISKNAWAKNFPESSKMFIEVGTSVKVEELNRGIIIQSGNDACV 136 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L + D Sbjct: 137 AMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDV 196 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + K G N N + + DG+KTG T +G+++V+SA +G L+ Sbjct: 197 PDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLV 256 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD 269 AV++G + N+R S LLS GF Sbjct: 257 AVVMGTKNANSRKSESKKLLSYGFRFFET 285 >gi|163852334|ref|YP_001640377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163663939|gb|ABY31306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 418 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 7/273 (2%) Query: 7 IIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++A + + + P + A+T + L+D ++G V+ E D P++PAS+ KLMTA + Sbjct: 16 MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75 Query: 65 VFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF +KE + + T T++++A S+ + S + L + L+ LIV+S ND Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ + Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 I V+ G R + ++ GF R+ Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQV 288 >gi|326391076|ref|ZP_08212623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325992861|gb|EGD51306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 379 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 157/352 (44%), Gaps = 25/352 (7%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F++ I + +S++ + + ++D TG V+ E AS TK Sbjct: 1 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT V K L +T+SK A+ S+ G + +++ L L++ S ND Sbjct: 61 IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLFGLMLNSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176 A AIAE + + + FV+ MN +K +G THF+ G+ HYTTA D+A+++ Sbjct: 116 AATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175 Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P++ K I + N N + + GADG+KTGFT +G +V+ Sbjct: 176 AFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287 SA + + IAV+L + + S +L F K + I K + N Sbjct: 235 SATREGRRFIAVVLNSPPM---WEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKEN 291 Query: 288 EVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V +SE+ C ++E N N + K ++ EKI + KI ++ Sbjct: 292 TVSVVSEKACVIPALEEEKQNVNLEFYLPKSVKAPVEKGEKIGYVTVKIGEE 343 >gi|308174134|ref|YP_003920839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM 7] gi|307606998|emb|CBI43369.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus amyloliquefaciens DSM 7] gi|328552733|gb|AEB23225.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens TA208] gi|328912469|gb|AEB64065.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Bacillus amyloliquefaciens LL3] Length = 389 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + + + +L + A+ + + L++ +TG ++ Sbjct: 1 MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGNIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E+ FV MN +K LGL T F N G+ + GHY++A DMA Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKGHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 ++ + Q+ ++ ++ K NTN + + G DG+KTGFT + + Sbjct: 181 KMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNL 285 + A+A +G+ +IAV+ GA RN +L F K N I+ + Sbjct: 241 LTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQFKTHPLYKRNQIVGSVKVKKG 300 Query: 286 SNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++ + SE + K+ N + KE K + +K +L + + KK Sbjct: 301 KQKLIKLTTSEPISLLAKKGENMDKVKKEVKINSNVTAPVKKGEVLGSLVLKK 353 >gi|134297080|ref|YP_001120815.1| penicillin-binding protein 6 [Burkholderia vietnamiensis G4] gi|134140237|gb|ABO55980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia vietnamiensis G4] Length = 437 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 GQFVTLMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 306 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 R S +L+ G+ + Sbjct: 307 EPKEGDRTADSMKMLNYGYSAFDSVRL 333 >gi|271499698|ref|YP_003332723.1| beta-lactamase [Dickeya dadantii Ech586] gi|270343253|gb|ACZ76018.1| Beta-lactamase [Dickeya dadantii Ech586] Length = 403 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 2 RQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 ++ + +A+ ++ F + Y L+D N+G V+AE D N Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADARRN 70 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTK+MT+YV+ +K K +TI K+A S K G + + Sbjct: 71 PASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G Y++ Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQYSS 190 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 ARDMA++ + D P ++ K + N N + + L DG+KTG T ++G Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQLNRNGLLWDSSLAVDGIKTGHTASAG 250 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 251 YNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVAPL 298 >gi|242238535|ref|YP_002986716.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya dadantii Ech703] gi|242130592|gb|ACS84894.1| Beta-lactamase [Dickeya dadantii Ech703] Length = 403 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 19/298 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETN-----------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 +++ ++ + F + N Y L+D N+G V+AE D NPA Sbjct: 13 IVLGTLLVLGVSAFSHAEDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADVRRNPA 72 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNAL 108 SLTK+MT+YV+ +K K +TI K+A S K G + + Sbjct: 73 SLTKMMTSYVIGQAIKAGKINPNDIVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVHMLN 132 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K +I++S ND VA+A+ + ++ F+ MN K+LGL T F HG+ G Y++AR Sbjct: 133 KGIILQSGNDACVAMADYVAGSQDAFISLMNGYVKSLGLQNTQFKTVHGLDAEGQYSSAR 192 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFN 227 DMA++ + D P ++ K + N N + + L DG+KTG T ++G+N Sbjct: 193 DMALIGQALIRDVPNEYATYKEKEFTFNNIRQMNRNGLLWDSSLSVDGIKTGHTASAGYN 252 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +VASA +G LI+ +LG R S LL+ GF + K+F + + Sbjct: 253 LVASATEGQMRLISAVLGGRTFKGRESESKKLLTWGFRFFETVAPL-KADKEFASEPV 309 >gi|240851366|ref|YP_002972769.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240268489|gb|ACS52077.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 363 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 189/315 (60%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ + +++ ++F +++A+ + +D TGH++ N W PASLTKLM Sbjct: 1 MQRLFYNLFFSVILSLFSAIALAQP-----FISVDVTTGHILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + + ITIS+ A++ P S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSRGEISPNKHITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FV+ MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAVAGSQKNFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILGA + R + +A LL GF ++ + +K + + + N+ ++ CT Sbjct: 236 IITVILGANNITEREEKAAQLLETGFLHQGRPQLTLATLKPYGRN--ITQANNMRQQTCT 293 Query: 299 TQKEIINYNTQMKEA 313 + ++ N+ + Sbjct: 294 PEAIKMHANSYDDQG 308 >gi|15603792|ref|NP_246866.1| DacA [Pasteurella multocida subsp. multocida str. Pm70] gi|12722361|gb|AAK04011.1| DacA [Pasteurella multocida subsp. multocida str. Pm70] Length = 394 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 149/347 (42%), Gaps = 17/347 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + IA ++L+ + + L+D N+G VIA PD PASLTK+MT+YVV Sbjct: 17 LCIAPSLLAQDIDYGIAVPQLNAQTFILMDYNSGAVIAALNPDQRQYPASLTKMMTSYVV 76 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 LK+ K +TI ++A S +++ + + +I+ S ND +VA Sbjct: 77 GDALKQGKINNADRVTIGESAWGKNFPGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVA 136 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE + + FV MN ++ GL THF HG+ + Y++ARDMAI+ + D P Sbjct: 137 IAEHVAGSVPAFVDAMNKYAQQFGLKNTHFTTVHGLDEDNQYSSARDMAIIGAHLIRDLP 196 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLI 240 + + K K N N + + DG+KTG T +G+N+VASA + LI Sbjct: 197 EEYKIYAEKDFTFNKIKQNNRNGLLWDKSIQVDGIKTGHTDKAGYNLVASATNANNMRLI 256 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC--- 297 +V++G R S LL GF N K + Q ++ +S V Sbjct: 257 SVVMGVPTIKGREVESKKLLQWGFANFDTFKTLEAGKAISEQSVYYGDMGKVSLGVLQDG 316 Query: 298 ---------TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 T K N + +A + + L I K Sbjct: 317 FITIPKGKQTELKARYELNKKYLQAPLAKGEVVGQVVYQLEGKDIAK 363 >gi|315633663|ref|ZP_07888953.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis ATCC 33393] gi|315477705|gb|EFU68447.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis ATCC 33393] Length = 399 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 146/353 (41%), Gaps = 25/353 (7%) Query: 5 LVIIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 + +IA A+ ++ ++ E N Y L+D N+G V+ PD PASLT Sbjct: 15 IALIAGALCASFSAVADDIQFNIAVPEIN-AQTYILMDYNSGTVLVALNPDQRQYPASLT 73 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+YV LK+ K T +TI ++A S +++ + + +++ Sbjct: 74 KMMTSYVTGQALKQGKIHDTDVVTIGESAWGQNFPGSSKMFLNLNQQVSVADLNRGIVIV 133 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND VA+AE + T FV MN + GL THF HG+ Y++ARDMAI+ Sbjct: 134 SGNDACVAMAEHVSGTVTNFVATMNKYVEQFGLKNTHFTTVHGLDDENQYSSARDMAIIG 193 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAI 233 I D P+ + K K PN N + + DGMKTG T +G+N+VASA Sbjct: 194 AHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTIHVDGMKTGHTDKAGYNLVASAT 253 Query: 234 Q-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK------------DF 280 + LI+V++G R S LL GF N K + Sbjct: 254 NPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTFEAGKAISEQRVYYGDESNI 313 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 L + I + + K + EA + + L I Sbjct: 314 QLGVLQDAFITIPKGKSSELKARYELEKKYLEAPLAKGQVVGKVVYQLDGKDI 366 >gi|17942531|pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 At 2.3 A Resolution gi|28374028|pdb|1NJ4|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 At 1.9 A Resolution gi|61679891|pdb|1SDN|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of Penicillin-Binding Protein 5 Modified By Mercury Length = 363 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 13 PQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 72 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 73 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGL 132 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 133 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNG 192 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 193 IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAES 252 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 253 KKLLTWGFRFFETVNPL-KVGKEFASEPV 280 >gi|237809572|ref|YP_002894012.1| Beta-lactamase [Tolumonas auensis DSM 9187] gi|237501833|gb|ACQ94426.1| Beta-lactamase [Tolumonas auensis DSM 9187] Length = 413 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 8/318 (2%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M + L + L+D N+G ++ + PASLTK+MT+YV+ LK Sbjct: 43 MPAPAPVALPSPPQISAKAHLLMDYNSGQILVGENTEERLPPASLTKMMTSYVIGQELKS 102 Query: 72 KKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + T +TIS+NA S + G +++DN K +I++S ND +A+AE + Sbjct: 103 GRIKPTDMVTISQNAWAKNYGDSSKMFIEVGKQVSVDNLNKGIIIQSGNDACIAMAEHIA 162 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E F MN + LG+S +HF+NAHG+ HY+TA DMA + + D P + Sbjct: 163 GSEDSFASLMNQWAAKLGMSNSHFVNAHGLHNVDHYSTAHDMARMGQALIRDLPNEYAIY 222 Query: 189 QIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGA 246 K G N N + L DG+KTG G+N+VASA LI+VI+G+ Sbjct: 223 SQKDFTFNGITQHNRNRLLWDKTLVVDGIKTGHVSEVGYNLVASATGPEGMRLISVIIGS 282 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306 R + S LL+ GF + + + Q+ + I T ++I Sbjct: 283 NSEQQRAEESKKLLTYGFRFYQNIQPYKQGAELATQRIWMGDKSEIR---LGTDRDINLL 339 Query: 307 NTQMKEAKDKESHFIDFE 324 + AK K + + Sbjct: 340 APRGSAAKMKADFQLTRD 357 >gi|51595441|ref|YP_069632.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis IP 32953] gi|153946853|ref|YP_001401914.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis IP 31758] gi|51588723|emb|CAH20334.1| putative penicillin-binding protein 5 [Yersinia pseudotuberculosis IP 32953] gi|152958348|gb|ABS45809.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP 31758] Length = 400 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 39 PQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGADDMVTVG 98 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 99 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 158 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 159 MNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 218 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+V+LG R S Sbjct: 219 IRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETES 278 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 279 KKLLTWGFRFFETVAPL-KVGKEFASEPV 306 >gi|254284899|ref|ZP_04959865.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] gi|150424902|gb|EDN16679.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226] Length = 389 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L + D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAMIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|332532441|ref|ZP_08408319.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis ANT/505] gi|332038084|gb|EGI74531.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis ANT/505] Length = 387 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 131/264 (49%), Gaps = 4/264 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++ A+ S + Y L+D TG VIAE D PASLTK+MT+YV+ Sbjct: 15 LVCTAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTQLAPASLTKMMTSYVI 74 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +K T +T+S+ A S + G +++D +I++S ND VA Sbjct: 75 GTEIKAGNIATTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQSGNDACVA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN + LG+S +HF+N+HG+ H+TT RDMA L + D P Sbjct: 135 MAEHIAGSESAFADLMNAHAAKLGMSNSHFINSHGLDTDEHFTTPRDMATLGAALIRDVP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 ++ K G K N N + L DG+KTG T +G+++V SA + D LIA Sbjct: 195 DEYALYKQKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIA 254 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 V++G R S LL+ GF Sbjct: 255 VVMGTSSERARKVESKKLLNYGFR 278 >gi|291484778|dbj|BAI85853.1| penicillin-binding protein [Bacillus subtilis subsp. natto BEST195] Length = 389 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + ++ F + A+ ++ L++ +TG V+ + Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 I++ + ++ ++ ++ K NTN + + G DG+KTG+T + + Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQ 282 + ASA +G+ IAV+ GA RN +L F R + +K Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E+ SE + K+ + N KE K K++ +K L + KK Sbjct: 301 KQKLIELTT-SEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353 >gi|289209131|ref|YP_003461197.1| beta-lactamase [Thioalkalivibrio sp. K90mix] gi|288944762|gb|ADC72461.1| Beta-lactamase [Thioalkalivibrio sp. K90mix] Length = 415 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 150/291 (51%), Gaps = 29/291 (9%) Query: 2 RQFLVIIAMAMLSNIFPFL-------------------SIAETNKLPYYTLLDTNTGHVI 42 R+ L+ +++A+ P + S Y L+D ++G ++ Sbjct: 10 RRALMTLSLAVCVAAMPAMADEPLPVPGSGGAMPSGIPSPPSDVTAKSYALMDFDSGLML 69 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKG 99 A D PASLTKLMTAYVVF +++ + L +TIS+ A S + G Sbjct: 70 ASREADVDREPASLTKLMTAYVVFGEIRDGRLGLEDTVTISERAWRTGMRGASRMFIEVG 129 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 + +++ L+ +I++S ND + A+AE++ +E FV MNN ++ LG++ ++F N+HG+ Sbjct: 130 DEVKVEDLLRGMIIQSGNDASTALAEAVAGSEGAFVDMMNNQARELGMTRSYFTNSHGLP 189 Query: 160 -QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218 T+A+DMA+L+ + +FP Y+ + E N N + G DG+KT Sbjct: 190 SDEPQSTSAQDMALLARALIREFPDLYGYYSERSFEFNDISQSNRNMLLWRDAGFDGLKT 249 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMG 263 G+T A+G+N+V+SA + D+ LIAV+LG N R S +L++ G Sbjct: 250 GWTSAAGYNLVSSAKRSDRRLIAVVLGIEASNHQEGGTRRANESQALVNWG 300 >gi|121535761|ref|ZP_01667563.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121305660|gb|EAX46600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 390 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 156/351 (44%), Gaps = 26/351 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F ++A ++ P + A+ L+D N G V+ E P PAS+TK+MT Sbjct: 17 FFQLMASLPIAWAAPLRTPAQLETTAESAVLMDAN-GAVLWEKEPHKRLPPASVTKVMTL 75 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + +++ + T + S++A S + G MT+ + + V SAND AVA Sbjct: 76 LLAVEAVEQGRIKPTDLVYTSEHAWRQGGSQIWLEPGEAMTVQEMMIAVAVVSANDAAVA 135 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 + E + +E+ V+ MN + +LGL THF+N +G+ HY +A D A+L P Sbjct: 136 LMEHIYGSEQAAVEAMNKRAASLGLQNTHFVNVNGLPAQDHYMSAYDTALLVKEAVR-HP 194 Query: 183 QYMHYFQIKGLEIK-GKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 YM IK ++ GK + NTN + + GADG+KTG+T + + +A + LI Sbjct: 195 LYMELCGIKEYWLREGKNWLVNTNKLLWWYKGADGLKTGWTEEAKYCFAGTAKRDGLRLI 254 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKT-----------DRKKINYIIKDFYQQNLSNEV 289 AV+ + + + S L+ GF N R K+N ++ Q ++N++ Sbjct: 255 AVVFATPEPRSHLRESMKLMDWGFANFAAVPVAEKEAVVGRIKVNKGMEREVQLVVANDL 314 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL-----KNKITK 335 + + + N ++ + I +K L +I K Sbjct: 315 TLV-----VPKGQNKNLQKKVVAEPQVNAPIIQGQKYGELIALCDGKEIGK 360 >gi|17986319|ref|NP_538953.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|225853470|ref|YP_002733703.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|17981904|gb|AAL51217.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|225641835|gb|ACO01749.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] Length = 370 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 120/341 (35%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 L+A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 237 LLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336 >gi|116690911|ref|YP_836534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia HI2424] gi|170734237|ref|YP_001766184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia MC0-3] gi|116649000|gb|ABK09641.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia cenocepacia HI2424] gi|169817479|gb|ACA92062.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia MC0-3] Length = 436 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 66 ATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 125 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S S + +++ + + +I++S ND A+A+AE + +E Sbjct: 126 ISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 185 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 186 GQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEK 245 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 246 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 305 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 306 EQKESERTQDSMKMLNYGYSAFDSVRL 332 >gi|254247085|ref|ZP_04940406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia PC184] gi|124871861|gb|EAY63577.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia PC184] Length = 436 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 66 ATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 125 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S S + +++ + + +I++S ND A+A+AE + +E Sbjct: 126 ISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 185 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 186 GQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEK 245 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 246 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 305 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 306 EQKESERTQDSMKMLNYGYSAFDSVRL 332 >gi|15601038|ref|NP_232668.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587136|ref|ZP_01676912.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121728082|ref|ZP_01681119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|147671927|ref|YP_001215796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|153823905|ref|ZP_01976572.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|227811892|ref|YP_002811902.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|229506574|ref|ZP_04396083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|229510630|ref|ZP_04400110.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229517239|ref|ZP_04406684.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229606053|ref|YP_002876757.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254850532|ref|ZP_05239882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|298500115|ref|ZP_07009921.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] gi|9657668|gb|AAF96181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548672|gb|EAX58722.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80] gi|121629630|gb|EAX62051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52] gi|126518573|gb|EAZ75796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|146314310|gb|ABQ18850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|227011034|gb|ACP07245.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2] gi|227014938|gb|ACP11147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395] gi|229345275|gb|EEO10248.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9] gi|229353075|gb|EEO18015.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33] gi|229356925|gb|EEO21843.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286] gi|229372539|gb|ACQ62961.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236] gi|254846237|gb|EET24651.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10] gi|297542096|gb|EFH78147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757] Length = 389 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 138/274 (50%), Gaps = 11/274 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 A G+ LI+V++G+ +R S LLS GF Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFR 278 >gi|189351640|ref|YP_001947268.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|189335662|dbj|BAG44732.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC 17616] Length = 410 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 39 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 98 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 99 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 158 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 159 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 218 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 + + N N + DG+KTG T A+GF +++SA + + L+AV++ Sbjct: 219 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 278 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 279 GEPKESDRTQDSMKMLNYGYSAFDAVRL 306 >gi|323499952|ref|ZP_08104910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] gi|323314969|gb|EGA68022.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326] Length = 392 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 4/251 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A Y LLD ++G V+A+ + +PASLTK+MT+YV+ L+ L +TI Sbjct: 35 APQIAAKGYVLLDYHSGKVLAQKEMNTKLSPASLTKMMTSYVIGQELERGNISLQDDVTI 94 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 SKNA S + G+T+ +++ + +I++S ND VA+AE + +E FV MN Sbjct: 95 SKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMN 154 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + +G+ THF N HG+ Y+T DMA+L + D P + K G Sbjct: 155 AWANTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRIYSDKKFTYNGIT 214 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + + DG+KTG T +G+++V+SA +G L+AV++G N R S Sbjct: 215 QYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKSANARKSESKK 274 Query: 259 LLSMGFYNKTD 269 LLS GF Sbjct: 275 LLSYGFRFFET 285 >gi|167901088|ref|ZP_02488293.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] Length = 371 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 3 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 62 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 63 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 122 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 123 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 182 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 183 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 242 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 243 KESDRVQDSMKMLNYGYTAFDSVRL 267 >gi|84685216|ref|ZP_01013115.1| D-alanyl-D-alanine carboxypeptidase family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666948|gb|EAQ13419.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2654] Length = 534 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 103/264 (39%), Positives = 153/264 (57%), Gaps = 3/264 (1%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 ++D +G V+ E D +PASLTK+MT Y+VF ++ + L + +TIS+NAS PPS Sbjct: 19 VVDARSGQVLHERNADARLHPASLTKMMTLYIVFEAVEHGEISLDSLVTISRNASAEPPS 78 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F++GS + L + ++ VKSAND A A+ E++ +E+ F MN T+K LG++ THF Sbjct: 79 KIGFREGSQVRLRHLIRAAAVKSANDAATALGEAISGSEEAFAARMNRTAKALGMTRTHF 138 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFL 211 N HG+ GH +TARDM L + D+PQY + F ++ K P+TN + T+ Sbjct: 139 ENMHGLTAEGHLSTARDMTTLGRHLFYDYPQYYNLFSRTSADVGVKTVPSTNRRFLTTYE 198 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADG+KTG+T ASG N+ ASA +G++ +IA I G +R+ A LL MGF + Sbjct: 199 GADGIKTGYTRASGSNLTASAHRGNKRIIATIFGGTSGPSRDAQMAELLDMGFRQAGNNV 258 Query: 272 KINYIIKDFYQQN--LSNEVPNIS 293 + K Y N L P ++ Sbjct: 259 AVRPPSKPPYMGNSGLGASAPLVA 282 >gi|319785898|ref|YP_004145373.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1] gi|317464410|gb|ADV26142.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1] Length = 407 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 5/246 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ + ++D TG V+A D PAS+TK+MT+YV+ + + + + +S+ Sbjct: 52 PSQATAWLVMDYATGQVLAGENVDEQVEPASITKVMTSYVIAAEMAAGRVKPDDQVLMSE 111 Query: 85 NASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 A S S F T L K + V+S ND A+A+AE + T++ F MN Sbjct: 112 RAWREGGARTDGSFSGFPVNQTAPLVEMEKGMAVQSGNDAAIALAEHVAGTQEAFADLMN 171 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + + +G+ +HF+NAHG+ GHY+TARD+A+L D+P+ Y +IK + G Sbjct: 172 SYAAKIGMKNSHFVNAHGLSAEGHYSTARDLALLGRAFVRDYPEQYGYNKIKEFTVNGIT 231 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG +G+ +++SA +GDQ L+AV++G R S +L Sbjct: 232 QPNRNLLLWRDSSVDGIKTGHHSKAGYCLMSSAQRGDQRLVAVLMGGASERQRADDSLAL 291 Query: 260 LSMGFY 265 L+ GF Sbjct: 292 LNWGFR 297 >gi|261212803|ref|ZP_05927087.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] gi|260837868|gb|EEX64545.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] Length = 378 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 129/271 (47%), Gaps = 6/271 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +A + E +L Y L+D +TG V+ E+ NPASLTKLMT+ Sbjct: 1 MACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTS 60 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV +K + IS NA S + G+ + L + + LIV+S ND Sbjct: 61 YVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + +E FV MN+ + LG++ + F N HG+ Y+T D+A+L I Sbjct: 121 SVAIAEHVAGSEGAFVSLMNSWALQLGMNNSSFANPHGLDNPNLYSTPYDIALLGQAIIR 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + G N N + + DGMKTG+T +G+++ +SA G+ Sbjct: 181 DLPEIYTLYSEPSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LI+V++GA R S LLS GF Sbjct: 241 LISVVMGAKSVKIREAESKQLLSYGFRFFET 271 >gi|182677354|ref|YP_001831500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633237|gb|ACB94011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 538 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 100/255 (39%), Positives = 152/255 (59%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + ++ +T + ++D +G+VI ++ PW PASLTKLMT YV +++ Sbjct: 47 LAIAAVATTTLTDTAQAAPGLVIDLASGNVIYQSEATRPWYPASLTKLMTLYVALQAVRD 106 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + TP+ +S A PPS FK G+ +TL NALK+L+VKSANDIA+ +AE + + Sbjct: 107 HRIGFDTPLVVSARAHAMPPSKMGFKPGTQVTLGNALKMLMVKSANDIAITVAEGIAGSV 166 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + F + MN + +LGL +HF+N +G+ HY++ARDMA+L+ + FPQY + I Sbjct: 167 EAFAEDMNAQAADLGLRQSHFVNPNGLHNEQHYSSARDMALLARALYLRFPQYASLYNIG 226 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L + + N N +G + G DGMKTG+TC +GFNIVASA Q + +I V+LG+ + T Sbjct: 227 ALRLGNQIIQNHNNLLGRYPGVDGMKTGYTCTAGFNIVASAEQSGRRVIVVVLGSPNVET 286 Query: 252 RNKVSASLLSMGFYN 266 R +A+L F N Sbjct: 287 RTIKAAALFDRAFSN 301 >gi|238920819|ref|YP_002934334.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella ictaluri 93-146] gi|238870388|gb|ACR70099.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri 93-146] Length = 403 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K +T+ Sbjct: 42 PQIDAEAYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVG 101 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G +++ N ++ + + S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 162 MNSYVKALGLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T + DG+KTG T ++G+N+VASA +G+ LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 282 KKLLTWGFRFFETVSPL 298 >gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016] Length = 393 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + +A + P + A + L+D ++G V+AE + +PASLTK+MT Sbjct: 15 SLALSATLAYSVSAAPIVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTKLSPASLTKMMT 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ L+ L + +SKNA S + G+T+ + + + +I++S ND Sbjct: 75 SYVIGQELERGNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGND 134 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E FV MN + ++G++ THF N HG+ Y+T DMA+L + Sbjct: 135 ACVAMAEHIAGSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALI 194 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + + G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 RDVPDEYRIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKM 254 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LIAV++G D N R S LLS GF Sbjct: 255 RLIAVVMGTKDMNARKSESKKLLSYGFRFFET 286 >gi|322833903|ref|YP_004213930.1| Beta-lactamase [Rahnella sp. Y9602] gi|321169104|gb|ADW74803.1| Beta-lactamase [Rahnella sp. Y9602] Length = 402 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 41 PQIDAEAYILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQSIKAGKISPTDIVTVG 100 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + + +I++S ND VA+A+ + ++ FV Sbjct: 101 PDAWATGNPVFKGSSLMFLKPGDRVPVSELNRGIILQSGNDACVAMADHVAGSQDAFVAI 160 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN +LGL THF HG+ G Y++ARDMA++ + D P+ ++ K Sbjct: 161 MNNYVNSLGLKNTHFGTVHGLDAAGQYSSARDMALIGQALIRDVPEEYATYKEKEFTFNN 220 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T ++G+N+VASA +G LI+ ++G R S Sbjct: 221 IRQMNRNGLLWDNSLNVDGIKTGHTDSAGYNLVASATEGQMRLISAVMGGHTYKGREVES 280 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 281 KKLLTWGFRFFETVSPLKAG-KEFASEPV 308 >gi|148975180|ref|ZP_01812104.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145965104|gb|EDK30354.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 417 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 11/308 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R ++ M + F ++ Y L+D +G +IAE PASLTKLM Sbjct: 27 RALACLLFAGMSVSSFAVVTPNPPELAAKGYVLMDFQSGSIIAEQNSRAILAPASLTKLM 86 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 TAYVV +K + +++S+NA S + G +++ N +K +IV+S N Sbjct: 87 TAYVVGQEIKAGRLTWQDKVSVSENAWSAKFSESSKMFIQPGDEISVSNLMKGVIVQSGN 146 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VA+AE + +E+ FV MN +K+LGL T+F+NAHG+ G T+ DMAIL I Sbjct: 147 DASVALAEHIAGSEQAFVSLMNGWAKSLGLQDTNFVNAHGLDGEGIQTSPLDMAILMKSI 206 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P +Q + N N + + DG KTG+T +G+++V+SA +G Sbjct: 207 IRDVPDVYALYQERRFTWNKITQYNRNKLLWDKSINVDGGKTGYTENAGYSLVSSATEGK 266 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-----DFYQQNLSNEVPN 291 LI+V++G R S +LLS GF D K++ + ++ N Sbjct: 267 MRLISVVMGTTSPQARTSASKNLLSYGFR-FYDTKQVMQEDRIESQVRVWKGNTEQVGAK 325 Query: 292 ISEEVCTT 299 I+E+ T Sbjct: 326 IAEDAYLT 333 >gi|188582286|ref|YP_001925731.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179345784|gb|ACB81196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 418 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 147/301 (48%), Gaps = 10/301 (3%) Query: 7 IIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++A + + + P + A+T + L+D +G V+ E D P++PAS+ KLMTA + Sbjct: 16 MLAAVLNAVLPPAPARAQTFQTAAAHAILVDAESGSVLFEKAADEPFSPASMAKLMTAEI 75 Query: 65 VFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF +KE + + T T++++A S+ + S + L + L+ LIV+S ND Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ IAE++ TE+ F MN +K +GL+ + F NA G TARDMA ++ + Sbjct: 136 AITIAENMAGTEEAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L Sbjct: 196 SYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQ-QNLSNEVPNISEEV 296 I V+ G R S ++ GF R+ N + D VP ++ + Sbjct: 256 IMVVSGLKTARDRAAESRKMMEWGFRAFEPRQVFAANEPVADVSVFGGEKGSVPVVANKP 315 Query: 297 C 297 Sbjct: 316 V 316 >gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6] gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O] Length = 393 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + +A + P + A + L+D ++G V+AE + +PASLTK+MT Sbjct: 15 SLALSATLAYSVSAAPVVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTKLSPASLTKMMT 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ L+ L + +SKNA S + G+T+ + + + +I++S ND Sbjct: 75 SYVIGQELERGNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGND 134 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E FV MN + ++G++ THF N HG+ Y+T DMA+L + Sbjct: 135 ACVAMAEHIAGSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALI 194 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + + G N N + + DG+KTG T +G+++V+SA +G Sbjct: 195 RDVPDEYRIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKM 254 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LIAV++G D N R S LLS GF Sbjct: 255 RLIAVVMGTKDMNARKSESKKLLSYGFRFFET 286 >gi|296116795|ref|ZP_06835401.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] gi|295976596|gb|EFG83368.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] Length = 402 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 145/266 (54%), Gaps = 3/266 (1%) Query: 3 QFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +++A +++ +F + A+ ++D TG V++++ D PASLTKLM Sbjct: 33 KVSLLVAGGLVAGLFGGAGQARAQYVGQISSIVMDARTGTVLSQSNADLRRFPASLTKLM 92 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L+ + L + +S +A+ PS + GS +T++ A+ L+ KSAND A Sbjct: 93 TLYLTFKALRAGRITLDQVVPVSAHAASMEPSKLGLRPGSYLTVEEAILALVTKSANDAA 152 Query: 121 VAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ E +E F Q M + L ++ T F NA G+ T+ARD+A L+ I Sbjct: 153 CALGEFLGAGSESTFAQIMTQQAARLSMNDTSFRNASGLPNEEQMTSARDLATLARHIAL 212 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DF +Y HYF + +G+ PN + + ++ GADG+KTG+T +G N+V SA++ + L Sbjct: 213 DFGEYYHYFAVPAFYFRGRYVPNHDPMLKSYPGADGLKTGYTAVAGHNLVTSAVRDNVRL 272 Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265 I V+LGA TRN V A LL F Sbjct: 273 IGVVLGAPSNETRNAVMADLLDDSFR 298 >gi|167736880|ref|ZP_02409654.1| penicillin-binding protein 6 [Burkholderia pseudomallei 14] Length = 376 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 5 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 64 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 65 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 124 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 125 AQFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 184 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 185 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 244 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 245 GETKESDRVQDSMKMLNYGYTAFDSVRL 272 >gi|91781628|ref|YP_556834.1| penicillin-binding protein 6 [Burkholderia xenovorans LB400] gi|91685582|gb|ABE28782.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia xenovorans LB400] Length = 418 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 159/340 (46%), Gaps = 15/340 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++ + ++ + L+D + V+A D PASLTKLMTAY+V Sbjct: 39 VVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLV 98 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + + S+ S + +T+ + + +IV+S ND A+A+ Sbjct: 99 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 158 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ DFP Sbjct: 159 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPD 218 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 219 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDAS 278 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE 294 + L++V++G + R + S +L+ G+ + K N ++ + + I Sbjct: 279 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 338 Query: 295 E----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q+++ + + +++ +K Sbjct: 339 KSDQYITVPKGMGDKVKPQIEQIDPLIAPLANGQQVGTVK 378 >gi|220926507|ref|YP_002501809.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219951114|gb|ACL61506.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 490 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 150/270 (55%), Gaps = 4/270 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PP Sbjct: 34 LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISPEAASEPP 93 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK G+ +TLDNALK+++VKSAND+A AIAE L + F MN T++ LG+ + Sbjct: 94 SKMGFKPGTQITLDNALKIIMVKSANDVAWAIAEGLAGSVDNFAVLMNETAQRLGMRDSR 153 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++N +G+ +T+ARDMAIL + DFP F I ++ PN N +G + Sbjct: 154 WVNPNGLPDPRQWTSARDMAILGRALLRDFPDNRDLFSISAIQFGRAVMPNHNGLLGRYA 213 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF + Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGFGQSSWG- 272 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 + D + + P++ +C ++ Sbjct: 273 --GTSLADLPT-SPAAAPPDMRPYICDKRR 299 >gi|254227305|ref|ZP_04920737.1| beta-lactamase, putative [Vibrio sp. Ex25] gi|262396428|ref|YP_003288281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|151939917|gb|EDN58743.1| beta-lactamase, putative [Vibrio sp. Ex25] gi|262340022|gb|ACY53816.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 385 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 5/277 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +++++ + + K Y L+D +G +IAE+ PASLTKLM Sbjct: 5 LARWIIVTCLISVPTFAVVTPNPPQLKAKGYVLMDFQSGAIIAEHNGRAGLAPASLTKLM 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 TAYVV +K + +T+S+NA S K +++ N ++ +I++S N Sbjct: 65 TAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQSGN 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L I Sbjct: 125 DACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSEGIQTSPTDMAKLMQSI 184 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K + N N + + DG KTG+T +G+++V+SA +G Sbjct: 185 INDVPAVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAKEGK 244 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI+V++G + R S +LLS GF D K++ Sbjct: 245 MRLISVVMGTPSKQARTSQSKNLLSYGFR-FYDTKQV 280 >gi|262395893|ref|YP_003287746.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] gi|262339487|gb|ACY53281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25] Length = 389 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 133/278 (47%), Gaps = 13/278 (4%) Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAET--NKLPY-----YTLLDTNTGHVIAENYPDHPW 51 MR+ L + + + + A T P Y L+D +TG V+ E Sbjct: 1 MRKSTILNTVLITGFAAVSSLAYAAPTVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 NPASLTKLMTAYV + L + IS+NA S + ++++L + Sbjct: 61 NPASLTKLMTAYVAGQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLY 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + L+V+S ND +VAIAE + +E FV MN+ + L L+ T F N HG+ G Y+T Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPY 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFN 227 D+A L I D P + G N N + + DGMKTG+T +G++ Sbjct: 181 DIAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + SA QGD LIAV++GA N R S LLS GF Sbjct: 241 LATSATQGDMRLIAVVMGAKSENIRESESKQLLSYGFR 278 >gi|165925339|ref|ZP_02221171.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166212479|ref|ZP_02238514.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|167422579|ref|ZP_02314332.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|165922946|gb|EDR40097.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. F1991016] gi|166206410|gb|EDR50890.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958593|gb|EDR55614.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 380 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 19 PQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVG 78 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 79 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 138 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 139 MNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 198 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+V+LG R S Sbjct: 199 IRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETES 258 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 259 KKLLTWGFRFFETVAPL-KVGKEFASEPV 286 >gi|323702413|ref|ZP_08114077.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323532552|gb|EGB22427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 400 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 28/334 (8%) Query: 14 SNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 SN P + + N L+D TG V+ E AS TK+MTA + Sbjct: 43 SNTIPAGNFGQPNRLWVSADAAILMDATTGQVLYEKNAHKRRPIASTTKIMTALLAIEC- 101 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 L + T+SK+A+ S+ + G +TL++ L ++ S ND VAIAE + Sbjct: 102 ----GNLKSVATVSKHAAGTEGSSIYLRAGEKLTLEHLLYGALMHSGNDACVAIAEHIAG 157 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 E+ FV MN + LG THF N +G+ H +TA D+A+++ P + Sbjct: 158 KEELFVNLMNYKAYLLGARNTHFANTNGLPHDQHLSTAYDLALITRHALK-NPVFKQIVA 216 Query: 190 IKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 + +IKG + NTN + ++ GA+G+KTG T A+G +V+SA + + LIAV+L Sbjct: 217 TRTHKIKGPQGLRYLANTNQMLWSYQGANGVKTGTTNAAGKCLVSSATRDGRLLIAVVLH 276 Query: 246 ALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 A D R S LL GF N T+ KK + + + EVP +++ Sbjct: 277 AGD---RYADSIRLLDYGFQNFTNHTVVKKGEVVSTIKVNEGIKAEVPVVADRDL----- 328 Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 T + D ++ E + K +K Sbjct: 329 ---VVTIPVKRTDMIDRLVEIEPVLQAPIKSGQK 359 >gi|68248580|ref|YP_247692.1| penicillin-binding protein 5 [Haemophilus influenzae 86-028NP] gi|68056779|gb|AAX87032.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 86-028NP] Length = 393 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 145/340 (42%), Gaps = 5/340 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 + LI+V++G R S LL GF N K + + Q+ + ++ Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I Q + E + + I K Sbjct: 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGK 350 >gi|90415028|ref|ZP_01222988.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90323842|gb|EAS40448.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 393 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 5/269 (1%) Query: 6 VIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 V +++++ + P + A Y L+D NTG V+ E + NPASLTKLMT+YV Sbjct: 17 VFLSLSLPALAVPTVVPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPASLTKLMTSYV 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 +K + IS+NA S + G+ +++ + + LI++S ND +V Sbjct: 77 AGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLIIQSGNDASV 136 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE + ++ FV MN+ +KNLG++ + F NAHG+ Y+T D+A+L + D Sbjct: 137 AIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIALLGQALIKDL 196 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + + N N +G + DGMKTG+T +G+++ +SA QG+ LI Sbjct: 197 PDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTGGAGYSLASSATQGNMRLI 256 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD 269 +V++G+ +R S LL+ GF + Sbjct: 257 SVVMGSSSTKSREAESKQLLNYGFRFFST 285 >gi|304407014|ref|ZP_07388668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus curdlanolyticus YK9] gi|304344001|gb|EFM09841.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus curdlanolyticus YK9] Length = 398 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 136/274 (49%), Gaps = 4/274 (1%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D ++G VI + PAS+TK+MT ++ L + + LT ++ S+ AS Sbjct: 50 SAVLMDADSGTVIFDKNSHDRLPPASITKIMTMLLIMEALDDGRLKLTDKVSASEYASSM 109 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G M++D +K + + S ND +VA+AE + +E +FV+ MN ++ LG+ Sbjct: 110 GGSQIFLEPGEEMSVDEMIKGIALASGNDASVAMAEKIGGSEAEFVKMMNEKAQQLGMKD 169 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQ--IKGLEIKGKKYPNTNW 205 THF N +G+ HY++A D+AI+S + +Y +Q ++ K NTN Sbjct: 170 THFANCNGLPVADHYSSAHDIAIMSRELLKHTQITKYTGMYQDYLRKTSEKPFWLVNTNK 229 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 V + GADG+KTGFT + F + A+A + +IAV++G + TRN +S+L F Sbjct: 230 LVWFYTGADGLKTGFTNEAKFCLSATARRDGLRVIAVVMGEPNTKTRNAEVSSMLDYSFA 289 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 ++ + VP + + Sbjct: 290 QYSNYSIFKQGDAIGKVKIEKGAVPELELKATHP 323 >gi|238752594|ref|ZP_04614067.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] gi|238709185|gb|EEQ01430.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC 43380] Length = 383 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 22 PQIDAEAYVLIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 81 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 82 KDAWATGNPEFRGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 141 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 142 MNNYVNALGLKNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 201 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 202 IRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISTVLGGHTYKGRETES 261 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 262 KKLLTWGFRFFETVAPL-KVGKEFASEPV 289 >gi|221211096|ref|ZP_03584075.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1] gi|221168457|gb|EEE00925.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1] Length = 438 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 + + N N + DG+KTG T A+GF +++SA + + L+AV++ Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 306 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 307 GEPKESDRTQDSMKMLNYGYSAFDAVRL 334 >gi|297579619|ref|ZP_06941546.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] gi|297535265|gb|EFH74099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385] Length = 389 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 138/274 (50%), Gaps = 11/274 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 A G+ LI+V++G+ +R S LLS GF Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFR 278 >gi|238028745|ref|YP_002912976.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] gi|237877939|gb|ACR30272.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia glumae BGR1] Length = 433 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 20/326 (6%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 66 LPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALASKKISM 125 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 126 EQIVTPSEAVRRVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 185 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K Sbjct: 186 VNMMNAEAQKLGMKGTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFT 245 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILGAL 247 + PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 246 YNHIRQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPLPGSADVSRRLVTVMMGEP 305 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK---EII 304 + R + S +L+ G+ + Y+ + E P + + + + Sbjct: 306 RESDRVQDSLKMLNYGYSAFDTVR--------LYKGGQAVETPRVYKGRVNSVPVGVQKD 357 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330 + T K A DK + + Sbjct: 358 QFVTLPKGAGDKLKPQVTLNTPLIAP 383 >gi|167617731|ref|ZP_02386362.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis Bt4] Length = 381 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 13 APGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 72 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 73 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 132 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 133 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFT 192 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 193 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGET 252 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 253 KESDRVQDSMKMLNYGYTAFDSVRL 277 >gi|296160368|ref|ZP_06843185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1] gi|295889349|gb|EFG69150.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1] Length = 410 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 15/340 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++ + ++ + L+D + V+A D PASLTKLMTAY+V Sbjct: 31 IVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLV 90 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + + S+ S + +T+ + + +IV+S ND A+A+ Sbjct: 91 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 150 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ DFP Sbjct: 151 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPD 210 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 211 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDAS 270 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE 294 + L++V++G + R + S +L+ G+ + K N ++ + + I Sbjct: 271 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 330 Query: 295 E----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q+++ + + +++ +K Sbjct: 331 KSDQYITVPKGMGDKVKPQIEQIDPLIAPLANGQQVGTVK 370 >gi|312171895|emb|CBX80152.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora ATCC BAA-2158] Length = 402 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 7/261 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A + L+D N+ V+AE D +PASLTK+M++YV+ LK K Sbjct: 33 MPAAPQLDAKAWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDV 92 Query: 80 ITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +T+ K+A S K G + + K ++++S ND ++A+A+ + ++ Sbjct: 93 VTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN+ + LGL THF HG+ +G Y+TARDMA++ + D P + K Sbjct: 153 FVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAF 212 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N N + T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R Sbjct: 213 TFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAVR 272 Query: 253 NKVSASLLSMGFYNKTDRKKI 273 + S LL G N + Sbjct: 273 FRESEKLLIWGLRNFETVTPV 293 >gi|256045637|ref|ZP_05448515.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256112362|ref|ZP_05453283.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256263050|ref|ZP_05465582.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|260562941|ref|ZP_05833427.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|265992060|ref|ZP_06104617.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265993797|ref|ZP_06106354.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|260152957|gb|EEW88049.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|262764778|gb|EEZ10699.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263003126|gb|EEZ15419.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263092926|gb|EEZ17101.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|326410032|gb|ADZ67097.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] gi|326539748|gb|ADZ87963.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 371 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 120/341 (35%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 L+A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 LLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337 >gi|229845375|ref|ZP_04465506.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 6P18H1] gi|229811683|gb|EEP47381.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 6P18H1] Length = 393 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|302392458|ref|YP_003828278.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302204535|gb|ADL13213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 397 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 156/351 (44%), Gaps = 20/351 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R +I+ + +L F AE + L++ +G VI E PA Sbjct: 4 RIISIILLVFLLCLSFSLTLSAEELPDPEFDLEAKSAVLMEAKSGKVIYEKNAHEELPPA 63 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK MT + + E KA L +T S+ A+ S + G M L+ +K + + Sbjct: 64 SITKTMTLLLTMEAIDEGKANLDEAVTTSEYAAGMGGSQIWLEPGEEMKLEEMIKAIAIV 123 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHYTTARD 169 SAND VA+AE L TE+ FV MN + LGL THF+N +G+ G+YT+A D Sbjct: 124 SANDACVAVAEHLYGTEEVFVNAMNEKADELGLDDTHFVNTNGLPVEDSDKRGNYTSAHD 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFN 227 + ++S + T +PQ + Y +I ++ NTN V + GADG+KTG T +GF Sbjct: 184 VGVMSRELVTKYPQVLDYTKIWIDHLRDGDSFLRNTNNLVRFYKGADGLKTGHTSQAGFG 243 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 +VA+A + IAV++ +TR K + LLS GF I + + Sbjct: 244 VVATAERKGLRFIAVVMKEETSDTRFKEAGELLSYGFSIYRSVPVIQKGEVAIDEVEIYK 303 Query: 288 -EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI--DFEKITLLKNKITK 335 + P + +K++ + E K + D KI + Sbjct: 304 GKNPKVKA---VARKDLTAAVIKGNEGNLKRQILVKEDLTAPLKRGEKIGE 351 >gi|254460841|ref|ZP_05074257.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales bacterium HTCC2083] gi|206677430|gb|EDZ41917.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 454 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 141/258 (54%), Gaps = 2/258 (0%) Query: 26 NKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + PY ++D +G V+ D +PASLTK+MT YV F ++ + L T + IS Sbjct: 10 SAAPYAAFVMDARSGEVLHARNADTRLHPASLTKMMTLYVAFQAIENGEITLDTTVKISA 69 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NA+ PS + G + ++ VKSAND A AI E L +E F + M T+K+ Sbjct: 70 NAAAEQPSKLGLRSGQRIKFRYLIRAAAVKSANDAATAIGEILEGSEAAFARRMTRTAKS 129 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+S T F NAHG+ + GH +TARDM+ L + D+P Y + F K + K PNTN Sbjct: 130 LGMSKTTFKNAHGLTEKGHLSTARDMSTLGRHLLYDYPDYYNLFSRKSTDAGVKTVPNTN 189 Query: 205 -WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + + GADG+KTG+T A+GFN+VASA +G + +IA + G TRN A LL MG Sbjct: 190 RRLLSNYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSTATRNARVAELLDMG 249 Query: 264 FYNKTDRKKINYIIKDFY 281 F R + K Y Sbjct: 250 FKRAPSRVALRKPTKPAY 267 >gi|73539986|ref|YP_294506.1| penicillin-binding protein 6 [Ralstonia eutropha JMP134] gi|72117399|gb|AAZ59662.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Ralstonia eutropha JMP134] Length = 399 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 141/300 (47%), Gaps = 17/300 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L D +G +A D PASLTKLMTAY+ F LKEK+ L + + Sbjct: 39 PQVAAKSWMLFDVTSGQALASQNADQRIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98 Query: 84 KNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + S + +++ + L LIV+S ND A+A+AE++ +E+ FV MN Sbjct: 99 TLVLKVKSDESRMFIEPNKPVSVQDLLMGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K K P Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIQDFPEYYGMYSQKEFTYNKIKQP 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254 N N + DG+KTG T ++G+ +++SA + G + LI+V++G R + Sbjct: 219 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLISVVIGTTTEQVRTQ 278 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 S +L+ GF + Y + P+I + T K + T + K Sbjct: 279 ESLKILNYGFQFFDTLR--------LYDKGQVLATPDIYKGKAGTVKIGVQNETFVTVPK 330 >gi|161619952|ref|YP_001593839.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|189025096|ref|YP_001935864.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|254696286|ref|ZP_05158114.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254705040|ref|ZP_05166868.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 3 str. 686] gi|161336763|gb|ABX63068.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|189020668|gb|ACD73390.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] Length = 370 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336 >gi|299133891|ref|ZP_07027085.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298591727|gb|EFI51928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 408 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 5/251 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L+D TG V+ E D P+S+ KLMTA V+F L + + LT IS+ Sbjct: 45 DTDAPTAILIDAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISE 104 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 NA S S +++D+ L L+++S ND +A+AE +E FV M Sbjct: 105 NAWRKGGAPSGSSTMFAAIHSQVSIDDLLHGLVIQSGNDSCIALAEGYAGSEDAFVNRMQ 164 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LGL+ + F N +G+ + + R++A L+ I +P + F + + Sbjct: 165 ARAKELGLTRSTFGNTNGLPNPDNKMSVRELAHLTRHIILTYPDFYKLFGEREFTWNKIR 224 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G+ GADG+KTG+T G+ +V SA+Q LI V+ G D R + L Sbjct: 225 QMNRNPLLGSLDGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDSGDRAAAAKKL 284 Query: 260 LSMGFYNKTDR 270 L GF N R Sbjct: 285 LEWGFKNFESR 295 >gi|187922505|ref|YP_001894147.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans PsJN] gi|187713699|gb|ACD14923.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans PsJN] Length = 409 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 161/340 (47%), Gaps = 15/340 (4%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++ ++++ + L+D + V+A PD PASLTKLMTAY+V Sbjct: 30 VVLPATLVASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89 Query: 66 FSFLKEKKAMLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 F L+ KK + + S+ S + +T+ + + +I++S ND A+A+ Sbjct: 90 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIAL 149 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +E +FV MNN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP Sbjct: 150 AELVGGSESQFVNMMNNEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------D 236 Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDAS 269 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE 294 + L++V++G + R + S +L+ G+ + K N ++ + + I Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 329 Query: 295 E----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q+++ + + +++ K Sbjct: 330 KSDQYITVPKGMGDKVKPQIEQIDPLIAPIANGQQVGTAK 369 >gi|157369441|ref|YP_001477430.1| D-alanyl-D-alanine carboxypeptidase fraction A [Serratia proteamaculans 568] gi|157321205|gb|ABV40302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans 568] Length = 428 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K +T+ Sbjct: 67 PQIDAESYVLIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGKIGQEDMVTVG 126 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 127 QDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNL 186 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN LGL THF HG+ G Y++ARDMA++ + D P ++ K Sbjct: 187 MNTYVSKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 246 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA +G LI+ +LG R S Sbjct: 247 IRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETES 306 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 307 KKLLTWGFRFFETVAPL-KVGKEFASEPV 334 >gi|85706300|ref|ZP_01037394.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217] gi|85669073|gb|EAQ23940.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217] Length = 387 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 9/300 (3%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 IA A+L A ++D TG V+ + D PAS++KLMT YV F Sbjct: 7 IAAALLCLGVALPVQAFETSAKAAFVMDVTTGTVLLDKNADTALPPASMSKLMTLYVAFE 66 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 ++ + L + +S++A Y S + +++ L+ +IV S ND IAE+L Sbjct: 67 AVRSGRLTLDERLPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEAL 126 Query: 128 C--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 TE F + M ++ +G++ + F NA G GH + RD+A+L+ I DFP + Sbjct: 127 SPDGTEAGFARFMTQRAQQMGMTNSMFRNASGWPAEGHVMSVRDLALLARHIIEDFPDFY 186 Query: 186 HYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 F G+ N N +G +GADG+KTG T +GF + SAIQGD+ +I V Sbjct: 187 KMFAETEFRFDGRAPSNINNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAIQGDRRVIFV 246 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCT 298 I G R + S ++++ F + + + D + ++ ++E+V T Sbjct: 247 ISGLATTQDRARESEAIVNWAFRQFAQKSVLTAGDEVARADVWMGETTSVGLTVAEDVST 306 >gi|160892702|ref|ZP_02073492.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50] gi|156865743|gb|EDO59174.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50] Length = 464 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 141/248 (56%), Gaps = 8/248 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + P+ L++ TG V+ E D PAS+TK+MT +VF +K ++ +T+S++A Sbjct: 109 ESPFCILMEATTGTVLYEKNADEARKPASVTKVMTLLLVFEAMKAGDYQMSDIVTVSEHA 168 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S F+ G T+++ +K +I+ S ND AVA+AE +E+ FVQ MN+ +K LG Sbjct: 169 ASMGGSQCFFETGEQQTVEDMIKCIIIASGNDAAVAMAEFTAGSEEAFVQRMNDRAKELG 228 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 + THF+NA G+ GH T+ARD+AI+S ++ + P+ + Y I I K Sbjct: 229 MEHTHFVNACGLDADGHETSARDIAIMSRQLIDEHPEILKYSGIWMDSIIHKTARGESRF 288 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + GA G+KTG+T + + + A+A + +LIAVI+GA ++ RNK Sbjct: 289 DLANTNKFLNIYTGATGLKTGYTATAKYCMSATANRNGITLIAVIMGAETKDIRNKEVCK 348 Query: 259 LLSMGFYN 266 L G+ N Sbjct: 349 LFDYGYAN 356 >gi|307130041|ref|YP_003882057.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] gi|306527570|gb|ADM97500.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937] Length = 403 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 2 RQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 ++ + +A+ ++ F + Y L+D N+G V+AE D N Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADARRN 70 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTK+MT+YV+ +K K +TI K+A S K G + + Sbjct: 71 PASLTKMMTSYVIGQAIKSGKISPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G Y++ Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDSFVNLMNGYVKALGLQNTNFKTVHGLDADGQYSS 190 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 ARDMA++ + D P ++ K + N N + + L DG+KTG T ++G Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAG 250 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 251 YNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVAPL 298 >gi|161523591|ref|YP_001578603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|221199887|ref|ZP_03572930.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2M] gi|221207444|ref|ZP_03580453.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2] gi|160341020|gb|ABX14106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans ATCC 17616] gi|221172647|gb|EEE05085.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2] gi|221180126|gb|EEE12530.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2M] Length = 438 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 + + N N + DG+KTG T A+GF +++SA + + L+AV++ Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 306 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 307 GEPKESDRTQDSMKMLNYGYSAFDAVRL 334 >gi|297180033|gb|ADI16258.1| d-alanyl-d-alanine carboxypeptidase [uncultured bacterium HF0010_16H03] Length = 384 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 140/274 (51%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ L+ + ++ L F+ A L Y L++ NT VIAE PAS+TK+M Sbjct: 1 MKKLLIPLLLSNLIYAQSFVPDAPELNLKSYILIEPNTNTVIAEFNSSSEIEPASMTKIM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T+YVV + L + IS+ A S + G +++ N LK +I++S ND + Sbjct: 61 TSYVVADQIANGLISLEDQVLISEKAWRMGGSKMFIEAGKKVSISNLLKGIIIQSGNDAS 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAI+E TE+ FV MN + +LG++ T F N+ G+ H+++A+D+A L+ Sbjct: 121 VAISEYAGGTERGFVDLMNAYADSLGMNNTIFQNSTGLPDENHFSSAKDLATLTSNFIIK 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP ++ K K N N + +DG+KTG T A+G+ +V SA +GD LI Sbjct: 181 FPDIYSLYKEKQFTFNNIKQLNRNKLLWRDESSDGVKTGHTEAAGYCLVGSAKRGDMRLI 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 V+ G+ N R S LL GF +K +N Sbjct: 241 TVVAGSDTDNNRFLASQRLLEYGFRFFATQKVLN 274 >gi|294637512|ref|ZP_06715798.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291089344|gb|EFE21905.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 403 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 25/298 (8%) Query: 1 MRQFLVIIAM------AMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVI 42 M++ + + ++L+ + A+ Y L+D N+G V+ Sbjct: 1 MKRKAASLTLKYVAVGSLLAVALTGAARADDVNLKTMIPGVPQIDAEAYILIDYNSGKVL 60 Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTF 96 AE+ D NPASLTK+MT+YV+ ++ K +T+ K+A S Sbjct: 61 AEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGNPVFQGSSLMFL 120 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 K G +++ N ++ + + S ND VA+A+ + ++ FV MNN K LGL THF H Sbjct: 121 KPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFETVH 180 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADG 215 G+ G +++ARDMA++ + D P ++ K + N N + T + DG Sbjct: 181 GLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQMNRNGLLWDTSMNVDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +KTG T ++G+N+VASA +G+ LI+ ++G R S LL+ GF + Sbjct: 241 IKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVSPL 298 >gi|78067705|ref|YP_370474.1| penicillin-binding protein 6 [Burkholderia sp. 383] gi|77968450|gb|ABB09830.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Burkholderia sp. 383] Length = 437 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 67 ATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 187 GQFVTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEK 246 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 306 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 R + S +L+ G+ + Sbjct: 307 EQKEGERTQDSMKMLNYGYSAFDSVRL 333 >gi|261493869|ref|ZP_05990381.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495135|ref|ZP_05991599.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309205|gb|EEY10444.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310471|gb|EEY11662.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 392 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 157/353 (44%), Gaps = 18/353 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI---------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ LV + + A Y L+D N+G V+ PD Sbjct: 1 MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMDYNSGEVLVSLNPDQRQ 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 PASLTK+MT+YVV LK K + +T+++N+ S S +++ + Sbjct: 61 YPASLTKMMTSYVVGEALKSGKVQNSDMVTVTENSWAQKFPGSSLMFLDLNSKVSVGELM 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K LI+ S ND +VA+AE + ++ F+ MN ++ GL THF HG+ Y++AR Sbjct: 121 KGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLKNTHFTTVHGLDDPEQYSSAR 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMAI+ I D P+ + K + K PN N + + DGMKTG T +G+ Sbjct: 181 DMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N+VASAI + LI+V++G R S LL GF N K I Q Sbjct: 241 NLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFANFETIKSIPAAQSVAEQSVYY 300 Query: 287 NEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 EV + ++ T + + + + + +K++ K ++ I + Sbjct: 301 GEVNKVQLGSVQDSFVTIPKGRSADLKARYELEKKNLEAPLAKGQVVGKMIYQ 353 >gi|218531093|ref|YP_002421909.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218523396|gb|ACK83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 418 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 139/273 (50%), Gaps = 7/273 (2%) Query: 7 IIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++A + + + P S A+T + L+D ++G V+ E D P++PAS+ KLMTA + Sbjct: 16 MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75 Query: 65 VFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF +KE + + T T++++A S+ + S + L + L+ LIV+S ND Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ + Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 195 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 I V+ G R + ++ GF R+ Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQV 288 >gi|295675328|ref|YP_003603852.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1002] gi|295435171|gb|ADG14341.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. CCGE1002] Length = 409 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 19/344 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + + + + + + A+ + L+D + V+A D PASLTKLMT Sbjct: 26 IAVGLVLPATLVASTAFAQVPPPGVNARSWVLVDATSNQVLASANADERVEPASLTKLMT 85 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 AY+VF L KK + I S+ S + +T+ + + +IV+S ND Sbjct: 86 AYLVFEALDTKKITMDQSIEPSEAVRRVRNDESRMFIEALKPVTVHDLVYGMIVQSGNDA 145 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+A+AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ Sbjct: 146 AIALAELVGGSEAQFVDMMNKEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAILSARLIR 205 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----- 234 D+P Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 206 DYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPLPGT 265 Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDF----YQQNLS 286 + L++V++G + R + S +L+ G+ Y+ T K N ++ Q+ Sbjct: 266 TDASRRLVSVMMGETKEHDRVQDSLKMLNYGYTAYDTTRLYKANQVVATPRVYKGSQDSV 325 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q++ + + ++I K Sbjct: 326 QVGVKSDQYITLPKGAGDKAKPQIELNDPLIAPIANGQQIGTAK 369 >gi|170747925|ref|YP_001754185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170654447|gb|ACB23502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 429 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 8/277 (2%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P+ L+D ++G V+ E D ++PAS+ KLMT +VF LK + + T T++++A + Sbjct: 45 PHAILIDADSGSVLFEKAADERFSPASMAKLMTTDIVFEALKSGRLSMDTEFTVTEDAWK 104 Query: 89 YPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 S+ + S + + + L+ LIV+S ND A+ IAE++ +E+ F MN +K Sbjct: 105 RGGAGGGGSSMFAQVNSRIKMADLLRGLIVQSGNDAAITIAENMAGSEEAFAGLMNQRAK 164 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +GL+ + F NA G TARDMA L+ I +P Y F K + N Sbjct: 165 EIGLTNSTFRNATGYSAPDQKVTARDMAKLALHIIDTYPDYYKIFSEKEFTWNKIRQQNR 224 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R S L+ G Sbjct: 225 NPLLALDIGADGLKTGYLEESGYALTGSAVQNGQRLVLVVSGLKTARDRASESRKLMEWG 284 Query: 264 FYNKTDRK---KINYIIKDFYQQNLSNEVPNISEEVC 297 F R+ + + S VP ++++ Sbjct: 285 FRAFEPRQVFAPGETVAEASVFGGQSGSVPLVAKKPV 321 >gi|257465150|ref|ZP_05629521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor 202] gi|257450810|gb|EEV24853.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus minor 202] Length = 392 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 14/287 (4%) Query: 1 MRQFLV----IIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L+ + AMA+ S + ++ A Y L+D N+G V+A PD Sbjct: 1 MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 PASLTK+MTAYVV +K+ K + +T+++N+ S + +++ + + Sbjct: 61 YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K LI+ S ND AVA+AE +++ F+ MN ++ GL T+F HG+ +++A Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAH 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMAI+ + D P+ + K + KK PN N + + DGMKTG T +G+ Sbjct: 181 DMAIIGAHVIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 N+VASA + LI+V++G R S LL GF N K + Sbjct: 241 NLVASATNANTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSL 287 >gi|145641831|ref|ZP_01797406.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae R3021] gi|229846948|ref|ZP_04467054.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 7P49H1] gi|145273453|gb|EDK13324.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae 22.4-21] gi|229810032|gb|EEP45752.1| penicillin-binding protein 5 precursor [Haemophilus influenzae 7P49H1] Length = 393 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 6/291 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + F+ + A ++ + F Y L+D N+G ++ PD PASLTK+M Sbjct: 11 LSSFVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YVV LK+ K T +TI ++A S + +++ + + +IV S N Sbjct: 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I Sbjct: 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQG 235 D P+ + K K N N + + DGMKTG T +G+N+VASA Sbjct: 191 IRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + LI+V++G R S LL GF N K + K+ +Q + Sbjct: 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAG-KEISEQRVY 300 >gi|114561878|ref|YP_749391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina NCIMB 400] gi|114333171|gb|ABI70553.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina NCIMB 400] Length = 403 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 4/251 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + Y L+D N+G VIAE NPASLTK+MT+YV+ ++ L + I Sbjct: 45 APSVAAKAYVLMDYNSGRVIAEENAYESLNPASLTKMMTSYVIGHEIRVGNISLDDDVAI 104 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +KNA S + G T+ + + + +I++S ND VA+AE + TE FV MN Sbjct: 105 TKNAWAKNFPDSSKMFIEVGKTVKVHDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDLMN 164 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + +K LG+ ++F N+HG+ H TTA DMAIL + D P+ + K G K Sbjct: 165 SWAKQLGMKDSYFENSHGLDSENHKTTAYDMAILGAALIRDVPEEYKVYSEKSFTYNGIK 224 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + L DG+KTG T +G+N+V+S LI+V++G + R S Sbjct: 225 QYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSGTSEGMRLISVVMGTSSESARKAESKK 284 Query: 259 LLSMGFYNKTD 269 LL+ GF Sbjct: 285 LLNYGFRFFET 295 >gi|319407837|emb|CBI81490.1| penicillin-binding protein [Bartonella sp. 1-1C] Length = 360 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 186/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M Q + + + +I L++A + +DT TG ++ N W PASLTKLM Sbjct: 1 MHQLFHTLFFSFILSIISSLTLAHP-----FISVDTTTGRILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 Y++F + K ITISKNA++ P +S +K GS +TLD ALK+ +VKS ND+A Sbjct: 56 MTYIIFRAMSTGKISPYKHITISKNAAQAPAIHSGYKAGSVLTLDTALKITLVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARDMA+L+ +I+ + Sbjct: 116 IAISEAISGSQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K N N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYTHYFSIPAIDFGNGKKIQSNLNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +I VILG+ N R + +A LL GF +K + ++ + + +++ ++ +++CT Sbjct: 236 IIVVILGSESINKREEKAAQLLDAGFLDKGSPQLTLATLEPYGTK--ISQITDMKQQICT 293 Query: 299 TQKEIINYNTQMKEA 313 + + N+ +E Sbjct: 294 PEAIKMRLNSYDEEG 308 >gi|153855284|ref|ZP_01996450.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814] gi|149752283|gb|EDM62214.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814] Length = 393 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 14/317 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 E P L++ +TG +I E PD PAS+TK+MT ++F L + L +T S Sbjct: 36 EQISAPSAILMEASTGQIIYEKNPDEKLPPASVTKVMTLLLIFDALDSGQIKLGDEVTTS 95 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + A+ S + G T T+D +K + V SAND V +AE +C E++FV MN +K Sbjct: 96 EYAASMGGSQVFLEPGETQTVDTLIKCISVASANDACVTMAEYICGNEEEFVTKMNKRAK 155 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200 +LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I K Sbjct: 156 DLGMKNTHFVNCNGLDADGHLTTARDIALMSKELITTYPQIFDYCNIWMENIIHKTQKGE 215 Query: 201 -----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 NTN + + A G+KTG T + F + A+ + D LIAVI+ A D R + Sbjct: 216 SEFGLTNTNKLIRQYEYATGLKTGSTSKAKFCVSATGRKDDIDLIAVIMAADDSKARVRD 275 Query: 256 SASLLSMGF-----YNKTDRKKINYI-IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 + +LL+ GF Y + +KKI+ + ++ ++ + V TT ++ + Sbjct: 276 AITLLNYGFGKCQKYTEKKQKKISPVEVRGGREKQVKVRQQGAFTYVDTTGADLTKIENK 335 Query: 310 MKEAKDKESHFIDFEKI 326 ++ K+ ++ EK+ Sbjct: 336 TRKDKNVKAPLKKGEKV 352 >gi|238790457|ref|ZP_04634227.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] gi|238721483|gb|EEQ13153.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 22 PQIDAEAYVLIDYNSGKVLAEMNADVRRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 81 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 82 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 141 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 142 MNNYVNALGLKNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 201 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 202 IRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTFKGRETES 261 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 262 KKLLTWGFRFFETVAPL-KVGKEFASEPV 289 >gi|254459679|ref|ZP_05073095.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2083] gi|206676268|gb|EDZ40755.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium HTCC2083] Length = 392 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 5/273 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR + IA ++ I + A + ++D TG V+ D PAS++K+M Sbjct: 1 MRHLITTIAALVVPLILALPAGAFETRAASAFVIDQTTGTVLLNKNADQMLPPASMSKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + +L + +SK+A Y S +T+++ ++ +IV S ND Sbjct: 61 TLYITFEALRDGRLVLDEKLPVSKHAMAYGGSTMFLDTTDRITVEDLIRGIIVLSGNDAC 120 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F + M ++ LG++ + F N++G Q GH + RD+A+L+ R+ Sbjct: 121 AVIAEALSPDGTEAGFARFMTQRAQQLGMTNSTFSNSNGWPQAGHRMSMRDLALLANRVI 180 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TDFP + F + + G+ N N + +GADG+KTG T +G+ +V SA Q Sbjct: 181 TDFPSFYPLFSEREFKFDGRAPQNTRNRNPLLSLGIGADGLKTGHTQEAGYGLVGSAKQR 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + +I VI G R + + S+++ F Sbjct: 241 GRRVIFVISGLQSAQARAEEAESIVNWAFRQFA 273 >gi|23502884|ref|NP_699011.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|62290881|ref|YP_222674.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82700793|ref|YP_415367.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|237816389|ref|ZP_04595382.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254690170|ref|ZP_05153424.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254694661|ref|ZP_05156489.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|254700670|ref|ZP_05162498.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254731203|ref|ZP_05189781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256060003|ref|ZP_05450185.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33] gi|256258424|ref|ZP_05463960.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256370435|ref|YP_003107946.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260546143|ref|ZP_05821883.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260567492|ref|ZP_05837962.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260755709|ref|ZP_05868057.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260758934|ref|ZP_05871282.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260760656|ref|ZP_05872999.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260884736|ref|ZP_05896350.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261214985|ref|ZP_05929266.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261323978|ref|ZP_05963175.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261751178|ref|ZP_05994887.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261755741|ref|ZP_05999450.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|294851267|ref|ZP_06791940.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|297247266|ref|ZP_06930984.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|306842839|ref|ZP_07475479.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] gi|23348913|gb|AAN30926.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|62197013|gb|AAX75313.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616894|emb|CAJ11993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|237788456|gb|EEP62671.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|256000598|gb|ACU48997.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260096250|gb|EEW80126.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260157010|gb|EEW92090.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260669252|gb|EEX56192.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260671088|gb|EEX57909.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260675817|gb|EEX62638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260874264|gb|EEX81333.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260916592|gb|EEX83453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261299958|gb|EEY03455.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261740931|gb|EEY28857.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261745494|gb|EEY33420.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|294819856|gb|EFG36855.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|297174435|gb|EFH33782.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|306287033|gb|EFM58544.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] Length = 371 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337 >gi|262164351|ref|ZP_06032089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] gi|262026731|gb|EEY45398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] Length = 389 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 136/278 (48%), Gaps = 11/278 (3%) Query: 3 QFLVIIAMAMLSNI--FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 +FL +MA ++ + F ++ T + P Y L+D +TG ++ E NPAS Sbjct: 5 KFLFRFSMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMTAYV +K + IS NA S + GS + L + + LI Sbjct: 65 LTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A G+ LI+V++G+ R S LLS GF Sbjct: 245 ATSGEMRLISVVMGSKSVKIREAESKQLLSYGFRFFET 282 >gi|293397311|ref|ZP_06641583.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291420229|gb|EFE93486.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 431 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE+ D +PASLTK+MT+YV+ LK K +T+ Sbjct: 70 PQIDAESYILIDYNSGKVLAESNADARRDPASLTKMMTSYVIGQALKSGKIGQEDLVTVG 129 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 130 QDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNL 189 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 190 MNTYVKQLGLQNTHFQTVHGLDAQGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 249 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA +G LI+ +LG R S Sbjct: 250 IRQVNRNGLLWDTSLNVDGIKTGHTSAAGYNLVASATEGQMRLISAVLGGRTYKGRETES 309 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 310 KKLLTWGFRFFETVAPLKAG-KEFASEPV 337 >gi|90581616|ref|ZP_01237407.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90437199|gb|EAS62399.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 391 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 9/269 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V I+ +L++ S A + P Y L+D N+G ++A + PASLTK+M Sbjct: 11 VAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YV+ +K + ISKNA S + G ++ + + + +IV S N Sbjct: 71 TSYVIGQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + Sbjct: 131 DACVAMAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILARSL 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K G N N + + DG+KTG T +G+++V++A +G+ Sbjct: 191 IRDLPNEFKIYAEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGN 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFY 265 LI+V++G +N R S LL+ GF Sbjct: 251 MRLISVVMGTASKNARLAESKKLLNFGFR 279 >gi|85707408|ref|ZP_01038489.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. 217] gi|85668064|gb|EAQ22944.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. 217] Length = 480 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 159/294 (54%), Gaps = 4/294 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R LV++A + I P + A ++D +G V+ N D +PASLTK+MT Sbjct: 10 RWGLVVMATFWMLIIVPLSAAAAPYAA---LVMDARSGEVLYSNNADTRLHPASLTKMMT 66 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YVVF ++ + L + ISK+A+ PPS + GS++ L ++ VKSAND A Sbjct: 67 LYVVFEAIENGEIGLDDKVLISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAAT 126 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E++ +E +F + MN T+++LG+S T F NAHG+ ++GH +TARDM+IL + DF Sbjct: 127 ALGEAIEGSEAQFARRMNRTAESLGMSRTTFKNAHGLTENGHLSTARDMSILGRHLFYDF 186 Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 PQY + F + +TN + + GADG+KTG+T A+GFN+ ASA + + +I Sbjct: 187 PQYYNLFSRITTDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERII 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 A + G +RN A LL +GF + + + Y + I+ Sbjct: 247 ATVFGGQSTASRNAKVAELLDLGFKKAPTQVAVLRPARPPYLGKIGTVPVRIAA 300 >gi|317491121|ref|ZP_07949557.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920668|gb|EFV41991.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 403 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 128/257 (49%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYILIDYNSGKVLAESNADARRNPASLTKMMTSYVIGQAMKAGKFTENDVVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S K G + + ++ + ++S ND VA+A+ + ++ FV Sbjct: 102 QDAWATGNPVFKGSSLMFLKPGDRVPVSLLIRGINLQSGNDACVAMADYVAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T + DG+KTG T ++GFN+VASA +G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSMNVDGIKTGHTESAGFNLVASATEGQMRLISAVLGGHTSKGRESES 281 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 282 KKLLTWGFRFFETVSPL 298 >gi|306839705|ref|ZP_07472507.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] gi|306405165|gb|EFM61442.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] Length = 370 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQAV-DMRKAICS 295 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336 >gi|294676715|ref|YP_003577330.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB 1003] gi|294475535|gb|ADE84923.1| D-alanyl-D-alanine carboxypeptidase-1 [Rhodobacter capsulatus SB 1003] Length = 538 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 1/286 (0%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 +L+ L +A + ++D TG V+ E D +PASLTK+MT Y+ F ++ Sbjct: 12 LLAIFLAVLPVALSAAPFAAYVMDARTGEVLYEKNADTRLHPASLTKMMTLYIAFQAIES 71 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 +A L T +T+S NA+ PS + G + L ++ +KSAND A AI + L E Sbjct: 72 GEASLDTMVTVSANAAGQAPSRLGLRTGQKIALRYLIRGAAIKSANDAAAAIGDFLEGDE 131 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F MN T+K LG+ T F NA+G+ + GH +TA DM+IL + DFPQY + F + Sbjct: 132 AHFAARMNRTAKALGMKNTTFKNANGLTKAGHLSTAHDMSILGRHLLYDFPQYYNLFSRR 191 Query: 192 GLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + NTN + + GADG+KTG+T +GFN+ ASA +G++ +IA I G Sbjct: 192 TADAGIAHVANTNRRFLDAYDGADGIKTGYTVPAGFNLTASAQRGNKRIIATIFGGTSPA 251 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 RN A L+ +GF + N +++ E Sbjct: 252 ARNSKMAELMDLGFERAPGKVNAQKPEPPMLMANAESDIAGPQVEA 297 >gi|149190858|ref|ZP_01869122.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1] gi|148835318|gb|EDL52291.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1] Length = 394 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 T Y L+D +G ++ D PASLTKLMTAYVV ++ + + + + Sbjct: 28 PPTLNAKGYVLMDYQSGAILVGGNQDAALAPASLTKLMTAYVVGKEIENGRTSWDSKVAV 87 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 S+NA S K G +T+ + L+ LIV+S ND AVA+AE + TE FV MN Sbjct: 88 SENAWSVKFPDSSKMFIKPGDNVTVADLLRGLIVQSGNDAAVALAEHVAGTESGFVALMN 147 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + NLG++ T F+NAHG+ G +TT DMAIL +I D P+ + K K Sbjct: 148 QWAVNLGMNNTQFINAHGLDGQGIHTTPNDMAILMRKIIEDVPEVYEIYSEKRFVWADIK 207 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + L DG KTG+T +G+++V+SA QG LI+V++G TR + S Sbjct: 208 QYNRNRLLWDNSLNVDGGKTGYTSDAGYSLVSSATQGQMRLISVVMGTPSTQTRVEASRQ 267 Query: 259 LLSMGFY 265 LL+ GF Sbjct: 268 LLNYGFR 274 >gi|206559102|ref|YP_002229862.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia J2315] gi|198035139|emb|CAR51013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein precursor) [Burkholderia cenocepacia J2315] Length = 436 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 132/267 (49%), Gaps = 8/267 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L +KK Sbjct: 66 ATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 125 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S S + +++ + + +I++S ND A+A+AE + +E Sbjct: 126 ISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 185 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY F K Sbjct: 186 GQFVTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 245 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245 + + N N + DG+KTG T A+GF ++ASA + G + L++V++G Sbjct: 246 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLIASAKRAIPGVDGQRRLVSVMMG 305 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKK 272 N R + S +L+ G+ + Sbjct: 306 EQKENDRTQDSMKMLNYGYSAFDSVRL 332 >gi|167844088|ref|ZP_02469596.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] Length = 376 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 5 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 64 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 65 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 124 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 125 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 184 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 185 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 244 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 245 GETKESDRVQDSMKMLNYGYTAFDSVRL 272 >gi|37525261|ref|NP_928605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784688|emb|CAE13588.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase fraction A) (DD-peptidase) (DD-caroboxypeptidase) (PBP-5) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 389 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 144/294 (48%), Gaps = 17/294 (5%) Query: 8 IAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 IA+A+ ++ F + A Y L+D N+G V+AE D +PASLTK Sbjct: 3 IALAISASAFANGNDANLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADAHRDPASLTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLI 112 +MT+YV+ +K K + +T+ +A S K G +++ + + Sbjct: 63 MMTSYVIGQAIKSGKIHPSDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVSMLSRGIN 122 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND VA+A+ + +++ FV MN K+LGL T+F HG+ G Y++ARDMA+ Sbjct: 123 LQSGNDACVAMADYVAGSQESFVNLMNGYVKSLGLKNTNFKTVHGLDAEGQYSSARDMAL 182 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVAS 231 + + D P+ ++ K + N N + L DG+KTG T A+G+N+VAS Sbjct: 183 IGQALIRDVPEEYTIYKEKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTSAAGYNLVAS 242 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 A +GD LI+ +LG R S LL+ GF + K+F + + Sbjct: 243 ATEGDMRLISAVLGGHTYKGRETESKKLLTWGFRFFETVAPL-KASKEFASEPV 295 >gi|254713557|ref|ZP_05175368.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1] gi|254716088|ref|ZP_05177899.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1] gi|261217856|ref|ZP_05932137.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261321294|ref|ZP_05960491.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|260922945|gb|EEX89513.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261293984|gb|EEX97480.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] Length = 371 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337 >gi|167917341|ref|ZP_02504432.1| penicillin-binding protein 6 [Burkholderia pseudomallei BCC215] Length = 377 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 6 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 65 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 66 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 125 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 126 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 185 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 186 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 245 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 246 GETKESDRVQDSMKMLNYGYTAFDSVRL 273 >gi|332529901|ref|ZP_08405852.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC 19624] gi|332040598|gb|EGI76973.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC 19624] Length = 378 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/269 (34%), Positives = 142/269 (52%), Gaps = 14/269 (5%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 + LLD ++G +A + D PASLTKLMTAY+VF L++ + L Sbjct: 9 SLAPKPPELAARAWLLLDLSSGQALAASNADQTLPPASLTKLMTAYLVFEALRDGRLSLE 68 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 P+TIS+ A P S + G + +++ +K L+V+S ND AVA+AE + + + FVQ Sbjct: 69 KPLTISERARRQPGSRMFLEAGMRVPVEDLIKGLLVQSGNDGAVALAEGVAGSMENFVQA 128 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN ++ LGL ATHF N G+ G +TARD+ +L+ R+ +DFP++ HY+ I+ G Sbjct: 129 MNEKARALGLGATHFANPTGLPVDGQQSTARDLGVLAQRLLSDFPEHAHYYGIRKYRYAG 188 Query: 198 KKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-----------GDQSLIAVI 243 N N + DGMKTG A G+++VA+A + G + L+AV+ Sbjct: 189 TPPANDSNRNLLLFRDPSVDGMKTGHVEAVGYSMVATAQREFPHLGAAGGPGPRRLLAVV 248 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LGA TR + LL+ G+ K Sbjct: 249 LGADSEQTRAAEAQRLLNWGYTAFEAVKL 277 >gi|53718048|ref|YP_107034.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243] gi|52208462|emb|CAH34396.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243] Length = 403 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 35 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 94 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 95 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 154 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 155 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 214 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 215 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 274 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 275 KESDRVQDSMKMLNYGYTAFDSVRL 299 >gi|209521266|ref|ZP_03269986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] gi|209498308|gb|EDZ98443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] Length = 409 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 19/345 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ +++ + + + + A+ + L+D + V+A D PASLTKLM Sbjct: 25 VIAVSLVLPATLVASSAFAQVPPPGVNARSWVLVDATSNQVLASANADERVEPASLTKLM 84 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 TAY+VF L KK + I S+ S + +T+ + + +IV+S ND Sbjct: 85 TAYLVFEALDTKKITMDQSIEPSEAVRRVRNDESRMFIEALKPVTVHDLVYGMIVQSGND 144 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A+A+AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ Sbjct: 145 AAIALAELVGGSEAQFVDMMNKEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLI 204 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ---- 234 D+P Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 205 RDYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPMPG 264 Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDF----YQQNL 285 + L++V++G + R + S +L+ G+ Y+ T K N ++ Q+ Sbjct: 265 ATDASRRLVSVMMGETKEHDRVQDSLKMLNYGYTAYDTTRLYKANQVVATPRVYKGAQDS 324 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + Q++ + + +++ K Sbjct: 325 VQVGVKGDQYITLPKGAGDKAKPQIELNDPLVAPIANGQQVGTAK 369 >gi|283784410|ref|YP_003364275.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] gi|282947864|emb|CBG87425.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Citrobacter rodentium ICC168] Length = 403 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +TI Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSVYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTAKAGYNLVASATEGQMRLISAVMGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 282 KKLLTWGFRFFETVNPL 298 >gi|13473090|ref|NP_104657.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14023838|dbj|BAB50443.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 389 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 9/301 (2%) Query: 2 RQFLVIIAM-AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R FL + + A++ ++ ++A + D G ++ W PASL+KLM Sbjct: 4 RHFLKLFSAGAIMLSVLAGSALANPV-----VVFDLKNGQILQHQDAFKRWYPASLSKLM 58 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA Sbjct: 59 TAYVTFRAIAAGEVQLDSPIKVTKHSAGEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+ E++ ++ F + MN + LG++ THF+N +G+ YTTARD+++L I+ + Sbjct: 119 MAVGENVGGSQAAFAERMNAEAARLGMNGTHFVNPNGLYSPDQYTTARDLSVLVMAIRRE 178 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+ Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 AV+LG +R + +A LL GF T + + N ++ +E+C + Sbjct: 239 AVVLGEKSAVSRAEAAAKLLDQGFDTPTAGSATVATLAPYGDTVSPN---DMHDEICKKK 295 Query: 301 K 301 K Sbjct: 296 K 296 >gi|22125078|ref|NP_668501.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis KIM 10] gi|45440942|ref|NP_992481.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis biovar Microtus str. 91001] gi|108808491|ref|YP_652407.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Antiqua] gi|108811250|ref|YP_647017.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Nepal516] gi|145599915|ref|YP_001163991.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Pestoides F] gi|149365498|ref|ZP_01887533.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125] gi|162419741|ref|YP_001606339.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis Angola] gi|165937675|ref|ZP_02226237.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|166008297|ref|ZP_02229195.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|167398703|ref|ZP_02304227.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167423578|ref|ZP_02315331.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468426|ref|ZP_02333130.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1] gi|170025245|ref|YP_001721750.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis YPIII] gi|186894472|ref|YP_001871584.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pseudotuberculosis PB1/+] gi|218929682|ref|YP_002347557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis CO92] gi|229838147|ref|ZP_04458306.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895938|ref|ZP_04511108.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A] gi|229898742|ref|ZP_04513887.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. India 195] gi|229901487|ref|ZP_04516609.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516] gi|270489672|ref|ZP_06206746.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294504405|ref|YP_003568467.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003] gi|21957931|gb|AAM84752.1|AE013720_16 D-alanyl-D-alanine carboxypeptidase, fraction A [Yersinia pestis KIM 10] gi|45435801|gb|AAS61358.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Microtus str. 91001] gi|108774898|gb|ABG17417.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Nepal516] gi|108780404|gb|ABG14462.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Yersinia pestis Antiqua] gi|115348293|emb|CAL21224.1| putative penicillin-binding protein 5 [Yersinia pestis CO92] gi|145211611|gb|ABP41018.1| penicillin-binding protein 5 [Yersinia pestis Pestoides F] gi|149291911|gb|EDM41985.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125] gi|162352556|gb|ABX86504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola] gi|165914425|gb|EDR33040.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Orientalis str. IP275] gi|165992679|gb|EDR44980.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. E1979001] gi|167051207|gb|EDR62615.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057748|gb|EDR67494.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751779|gb|ACA69297.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pseudotuberculosis YPIII] gi|186697498|gb|ACC88127.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia pseudotuberculosis PB1/+] gi|229681416|gb|EEO77510.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516] gi|229688290|gb|EEO80361.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. India 195] gi|229694513|gb|EEO84560.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700861|gb|EEO88890.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A] gi|262362606|gb|ACY59327.1| putative penicillin-binding protein 5 [Yersinia pestis D106004] gi|270338176|gb|EFA48953.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27] gi|294354864|gb|ADE65205.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003] gi|320016196|gb|ADV99767.1| putative penicillin-binding protein 5 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 400 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 39 PQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVG 98 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 99 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 158 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 159 MNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 218 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+V+LG R S Sbjct: 219 IRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETES 278 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 279 KKLLTWGFRFFETVAPL-KVGKEFASEPV 306 >gi|186474981|ref|YP_001856451.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum STM815] gi|184191440|gb|ACC69405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum STM815] Length = 409 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 160/344 (46%), Gaps = 19/344 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + A+ + + + A+ + L+D + V+A PD PASLTKLMT Sbjct: 26 FALGFALPAALVASTAFAQVPPPGVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMT 85 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 AY+ F L KK + I S+ S + +T+ + + +I++S ND Sbjct: 86 AYLTFEALASKKITMDQSINPSEAVRRVRNDESRMFIEANKPVTVHDLVYGMIIQSGNDA 145 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+A+AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ Sbjct: 146 AIALAELVGGSEAQFVNMMNAEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAILSARLIR 205 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG---- 235 D+P Y + F +K K PN N + DG+KTG T A+G+ ++ASA + Sbjct: 206 DYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGV 265 Query: 236 ---DQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDFYQQNLSNEVP 290 + L+ V++G + R + S +L+ G+ Y+ K N +++ S + Sbjct: 266 PDASRRLVTVMMGEQKEHDRVQDSLKMLNYGYSAYDAVRLYKANQVVETPRVYKGSQDTV 325 Query: 291 NIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + + + + Q++ A + +++ +K Sbjct: 326 KLGVTTDQYITLPKGMADKAKPQIEHADPLIAPIAQGQQVGTVK 369 >gi|167755687|ref|ZP_02427814.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402] gi|167704626|gb|EDS19205.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402] Length = 379 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 164/323 (50%), Gaps = 13/323 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ + + L I ++ T L++ N+ ++ + + PAS TK Sbjct: 1 MKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAEEKLYPASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT ++F L+ KK IT SK A+ S + G +++L + K + + SAND Sbjct: 61 IMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMFKSIAIASAND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE + + KFV+ MN+ +K LGL THF NA G+ HYT A D+AI++ + Sbjct: 121 ASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAHDLAIMAAYLI 180 Query: 179 TDFPQYMHYFQ------IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + I+ + NTN + + G DG+KTG+T +G+ +V +A Sbjct: 181 EIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTKEAGYCLVTTA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD-FYQQNLSNEVPN 291 + Q +I V++ TRN+ SLL GF N K++ KD +Q+L +++ N Sbjct: 241 QRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNY---KQVTIFKKDTLIEQHLVDKMDN 297 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 ++ +V +K+I+ + +AK Sbjct: 298 LTIDV-KCKKDIVYTKAKSADAK 319 >gi|167717860|ref|ZP_02401096.1| penicillin-binding protein 6 [Burkholderia pseudomallei DM98] gi|167892592|ref|ZP_02479994.1| penicillin-binding protein 6 [Burkholderia pseudomallei 7894] Length = 378 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 7 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 66 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 67 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 126 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 127 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 186 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 187 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 246 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 247 GETKESDRVQDSMKMLNYGYTAFDSVRL 274 >gi|254196217|ref|ZP_04902641.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13] gi|169652960|gb|EDS85653.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13] Length = 437 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|254562080|ref|YP_003069175.1| penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens DM4] gi|254269358|emb|CAX25324.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens DM4] Length = 403 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 7/273 (2%) Query: 7 IIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++A + + + P S A+T + L+D ++G V+ E D P++PAS+ KLMTA + Sbjct: 1 MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60 Query: 65 VFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF +KE + + + T++++A S+ + S + L + L+ LIV+S ND Sbjct: 61 VFRAIKEGRLSMDSEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ + Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L Sbjct: 181 TYPEFYKIYSEREFTWNRIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 I V+ G R + ++ GF R+ Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQV 273 >gi|163844056|ref|YP_001628460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|163674779|gb|ABY38890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] Length = 370 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 118/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQ+ HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 177 FPQHAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336 >gi|302382572|ref|YP_003818395.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas subvibrioides ATCC 15264] gi|302193200|gb|ADL00772.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas subvibrioides ATCC 15264] Length = 514 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 145/256 (56%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + + N ++D TG V+ + D PAS+TK+MT Y+VF L++ L I Sbjct: 35 AQSGENSRYAAIVVDAGTGEVLFARHADSQRYPASVTKMMTLYLVFEALEKGTVHLDDVI 94 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 T+S A+ PPS G T+ LD+A++ V+SAND+A+ +AE + ++ +F Sbjct: 95 TVSPLAASQPPSKLGLAAGQTIRLDDAMRATTVRSANDMAMVLAEHIGGSQARFAALATL 154 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG+ T ++N +G+ T+ARD+AILS I D+PQY YF I +G++Y Sbjct: 155 KAQELGMGQTRYVNPNGLPDSRQLTSARDLAILSRAIMRDYPQYYSYFGIHDWTYQGREY 214 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + G DG+KTGFT ASG+N+ ASA++G + +I ++LG TRN A+L+ Sbjct: 215 RNTNGLLLGGNGYDGIKTGFTNASGYNLAASAVRGGKRVITIVLGGRSSITRNAHVAALM 274 Query: 261 SMGFYNKTDRKKINYI 276 GF +T R I Sbjct: 275 DTGFEVETRRAAGERI 290 >gi|330445206|ref|ZP_08308858.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489397|dbj|GAA03355.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 391 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 9/269 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V I+ +L++ S A + P Y L+D N+G ++A + PASLTK+M Sbjct: 11 VAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTKMM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YV+ +K + +SKNA S + G T+ + + + +IV S N Sbjct: 71 TSYVIGQEIKNGNISPDDTVVVSKNAWAKNFPGSSKMFLEVGKTVKVSDLNRGIIVDSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + Sbjct: 131 DACVAMAEHIAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRSDLYTTPYDLSILARHL 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 +D P + K G N N + + DG+KTG T +G+++V++A +G+ Sbjct: 191 ISDLPNEFKIYSEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGN 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFY 265 L+AV++G +N R S LL+ GF Sbjct: 251 MRLVAVVMGTASKNARLAESKKLLNFGFR 279 >gi|166030455|ref|ZP_02233284.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC 27755] gi|166029813|gb|EDR48570.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC 27755] Length = 426 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 99/330 (30%), Positives = 159/330 (48%), Gaps = 19/330 (5%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L++ +TG VI E D PAS+TK+MT ++F L+E K L +T S+ Sbjct: 70 DISAPSALLMEASTGQVIYEKDADSKRPPASVTKVMTLLLIFDALQEGKIHLEDEVTTSE 129 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G T++ +K + V SAND V +AE +C E++FV MN +K Sbjct: 130 YAASMGGSQVFLEPGEVQTVETLIKCISVASANDACVCMAEYICGNEQEFVNQMNERAKG 189 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199 LG+ THF+N +G+ GH TTARD+A++S + +PQ Y I +I Sbjct: 190 LGMENTHFVNCNGLDAEGHVTTARDIALMSRELIHTYPQIFDYCNIWMEDITHTTKKGST 249 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 NTN + + A G+KTG T + F I A+A + + +IAVI+ A D R + + Sbjct: 250 QFGLTNTNKMIRQYEYATGLKTGSTSQAKFCISATARKDNTDMIAVIMAADDSKARMRDA 309 Query: 257 ASLLSMGF-----YNKTDRKKINYI-IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 +LL+ GF Y + KKI + +K ++ + + V T ++ + Sbjct: 310 ITLLNYGFGKCQKYQEDTVKKIQDVPVKHGVEKKVGAAQMELFSYVDVTGADLSTIKKIV 369 Query: 311 KEAKD-----KESHFIDFEKITLLKNKITK 335 K ++ ++ I +L +I K Sbjct: 370 KLKENATAPVRQGDKIGEVIYSLNGKEIGK 399 >gi|220935870|ref|YP_002514769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp. HL-EbGR7] gi|219997180|gb|ACL73782.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp. HL-EbGR7] Length = 391 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 89/252 (35%), Positives = 132/252 (52%), Gaps = 10/252 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88 Y ++D +G V+AE D PASLTKLMTAY+VF ++ L + IS+ A Sbjct: 40 YLIMDHLSGMVLAERAADERVEPASLTKLMTAYLVFQEIERGTISLDDEVRISERAWRTG 99 Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + + + L + L+ LI++S ND +VA+AE + TE FV MN ++ LG+ Sbjct: 100 MQGASRMFIEVNNRVRLQDLLRGLIIQSGNDASVALAEHVGGTEGAFVDLMNAQARALGM 159 Query: 148 SATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 THF N+HG+ + YT+ARDMA+L+ + DFPQ+ Y+ + G N N Sbjct: 160 VNTHFTNSHGLPTEEAQYTSARDMALLASALIRDFPQHYGYYSERNFTFNGITQSNRNLL 219 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNT----RNKVSASLL 260 + DG+KTG+T SG+N+V+S Q L+AV++G A R S +L Sbjct: 220 LWRDSQVDGLKTGWTRTSGYNLVSSREQEGMRLVAVVMGIDAPSHQQGGIKRANESQALY 279 Query: 261 SMGFYNKTDRKK 272 S GF + Sbjct: 280 SWGFRQFETHRL 291 >gi|269104718|ref|ZP_06157414.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161358|gb|EEZ39855.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 414 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 134/272 (49%), Gaps = 7/272 (2%) Query: 5 LVIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L+ + ++ + + + + L+ NTG +IA + P PASLTK+MT Sbjct: 12 LIFASCLVIPSFYSHSAYLLDPPDIDAKAWVLMSYNTGQIIAGDNLHKPLAPASLTKIMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +VV +K L+ +TIS+NA S G ++++++ L+ +IV S ND Sbjct: 72 TFVVGEEIKAGNIQLSDMVTISENAWGKKFPGSSKMFLNVGDSVSVEDLLRGVIVSSGND 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + + F++ MN ++ G+ ++F N HG+ T+A DMA+L+ Sbjct: 132 ATVALAEHVAGHQSAFIKMMNQYAERYGMKDSYFSNPHGLDADDQTTSAYDMALLTRAFI 191 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 + P + K K N N + L DG+KTG+T +G+++V+SA G+Q Sbjct: 192 QEVPDIYDMHKEKSFTFGDIKQGNRNALLWDETLHVDGVKTGYTKQAGYSLVSSAKNGEQ 251 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LIAV+LG R S LLS GF D Sbjct: 252 RLIAVVLGTKSAKARRLESKQLLSWGFRFYED 283 >gi|227823262|ref|YP_002827234.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] gi|227342263|gb|ACP26481.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] Length = 372 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 180/308 (58%), Gaps = 2/308 (0%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 A+ +L+ + L+ A ++D T V W PASLTKLMTAY F Sbjct: 14 AIGVLAGVCAALAAALPVSANPRLVVDVATLKVYEHQDIFQKWYPASLTKLMTAYTTFQA 73 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 +K + L +P+ ++KNA+ PPS +K G MTLD+ALK+++VKSAND+AVAIAE++ Sbjct: 74 IKAGQLTLESPVVMTKNAASEPPSKMFYKPGQAMTLDSALKMMLVKSANDVAVAIAETVS 133 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E+ F+ MN ++ +G++++HF+NA+G+ G YTTARD+A+L+ +K +FPQY YF Sbjct: 134 GSEQAFIDRMNAEARRIGMTSSHFINANGLPGQGQYTTARDLAVLAITLKREFPQYASYF 193 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 ++G K Y N N +G F GADGMKTGF CASGFN V+SA + +S+++V+LG Sbjct: 194 SLEGFTTGKKDYANYNMLIGRFEGADGMKTGFICASGFNQVSSATRAGRSVVSVVLGEDS 253 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 R SA LL M K I + + V ++S+E+C+ Q + Sbjct: 254 LGARADESARLLQMALTTSAAEKPSLTAIAPYGESR--EVVADVSKEICSKQAAKVRSEG 311 Query: 309 QMKEAKDK 316 + + + K Sbjct: 312 RDEAGRQK 319 >gi|237734435|ref|ZP_04564916.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7] gi|229382665|gb|EEO32756.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7] Length = 390 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 164/323 (50%), Gaps = 13/323 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ + + L I ++ T L++ N+ ++ + + PAS TK Sbjct: 12 MKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAEEKLYPASTTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT ++F L+ KK IT SK A+ S + G +++L + K + + SAND Sbjct: 72 IMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMFKSIAIASAND 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +VA+AE + + KFV+ MN+ +K LGL THF NA G+ HYT A D+AI++ + Sbjct: 132 ASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAHDLAIMAAYLI 191 Query: 179 TDFPQYMHYFQ------IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + I+ + NTN + + G DG+KTG+T +G+ +V +A Sbjct: 192 EIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTKEAGYCLVTTA 251 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD-FYQQNLSNEVPN 291 + Q +I V++ TRN+ SLL GF N K++ KD +Q+L +++ N Sbjct: 252 QRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNY---KQVTIFKKDTLIEQHLVDKMDN 308 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 ++ +V +K+I+ + +AK Sbjct: 309 LTIDV-KCKKDIVYTKAKSADAK 330 >gi|254718081|ref|ZP_05179892.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13] gi|265983032|ref|ZP_06095767.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|264661624|gb|EEZ31885.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] Length = 371 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQAV-DMRKAICS 296 Query: 299 TQKEIINYNTQMKEAKDKES----HFIDFEKITLLKNKITK 335 Q ++ + E + K + H +D + I + +++ Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337 >gi|229526111|ref|ZP_04415515.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] gi|229336269|gb|EEO01287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis VL426] Length = 389 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 3 QFLVIIAMAMLSNI-----FPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 +FLV +MA ++ + + E +L Y L+D +TG V+ E+ NPAS Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMT+YV +K + IS NA S + G+ + L + + LI Sbjct: 65 LTKLMTSYVAGQEMKRGNIHAGDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+ Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 L I D P+ + G N N + + DGMKTG+T +G+++ +S Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNE 288 A G+ LI+V++G+ +R S LLS GF T +K + I NE Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304 Query: 289 VPNISEEVC---TTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V S + + ++ N ++ K+ E+ + + Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVV 345 >gi|85058773|ref|YP_454475.1| D-alanyl-D-alanine carboxypeptidase fraction A [Sodalis glossinidius str. 'morsitans'] gi|84779293|dbj|BAE74070.1| penicillin-binding protein 5 [Sodalis glossinidius str. 'morsitans'] Length = 403 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+ E D +PASLTK+MT+YV+ +K K +T++ Sbjct: 42 PQIDAESYILIDYNSGKVLTEMNADVRRDPASLTKMMTSYVIGQAIKSGKITPNDVVTVN 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + +I++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFKGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 162 MNNYVGALGLQNTHFETVHGLDAPGQFSSARDMAMIGKALIRDVPDEYATYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + + L DG+KTG T ++G+N+VASA +G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDSNLNVDGIKTGHTESAGYNLVASATEGQMRLISAVLGGHSMKGRENES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 L++ GF + K+F + + Sbjct: 282 RKLMTWGFRFFETVAPLKAG-KEFAAEPV 309 >gi|167909308|ref|ZP_02496399.1| penicillin-binding protein 6 [Burkholderia pseudomallei 112] Length = 379 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 8 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 67 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 68 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 127 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 128 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 187 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 188 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 247 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 248 GETKESDRVQDSMKMLNYGYTAFDSVRL 275 >gi|332977441|gb|EGK14217.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 395 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 6/251 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D +TG V+ E PAS+TK+MT +V L++ + + S+ Sbjct: 31 APSSKSAVLVDADTGTVLYEKNSREKLPPASITKIMTMLLVMEALEKGQISYEDRVRTSE 90 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 AS S + G M L++ LK + V SAND +VA+AE L TE++FV+ MN ++ Sbjct: 91 YASSMGGSQIFLETGEVMKLEDLLKAVAVGSANDASVALAEHLAGTEERFVEMMNRRAEE 150 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KK 199 LG+ T F N +G+ HY+TARD+AI+S + + + + ++ Sbjct: 151 LGMKDTRFQNPNGLPASDHYSTARDIAIMSRELLK-HREITRFTKTYEDYLRKESKKPFW 209 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + G DG+KTGFT +GF + A+A + D IAV++G D RN+ + Sbjct: 210 LVNTNKLVKFYEGLDGLKTGFTREAGFCLAATAKRRDLRAIAVVMGEPDVKARNREITRM 269 Query: 260 LSMGFYNKTDR 270 L F +R Sbjct: 270 LDFAFNQYANR 280 >gi|269139992|ref|YP_003296693.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda EIB202] gi|267985653|gb|ACY85482.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda EIB202] gi|304559825|gb|ADM42489.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 403 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 7/257 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K +T+ Sbjct: 42 PQIDAEAYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVG 101 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G +++ N ++ + + S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 162 MNSYVKALGLQNTHFETVHGLDASGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T + DG+KTG T ++G+N+VASA +G+ LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKI 273 LL+ GF + Sbjct: 282 KKLLTWGFRFFETVSPL 298 >gi|292487778|ref|YP_003530653.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430] gi|292899010|ref|YP_003538379.1| penicillin-binding protein 6 [Erwinia amylovora ATCC 49946] gi|291198858|emb|CBJ45968.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Erwinia amylovora ATCC 49946] gi|291553200|emb|CBA20245.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430] Length = 402 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 7/261 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A + L+D N+ V+AE D +PASLTK+M++YV+ LK K Sbjct: 33 MPAAPQLDAKAWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDV 92 Query: 80 ITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +T+ K+A S K G + + K ++++S ND ++A+A+ + ++ Sbjct: 93 VTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN+ + LGL THF HG+ +G Y+TARDMA++ + D P + K Sbjct: 153 FVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAF 212 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N N + T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R Sbjct: 213 TFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAVR 272 Query: 253 NKVSASLLSMGFYNKTDRKKI 273 + S LL G N + Sbjct: 273 FRESEKLLIWGVRNFETVTPV 293 >gi|319761132|ref|YP_004125069.1| beta-lactamase [Alicycliphilus denitrificans BC] gi|330822990|ref|YP_004386293.1| beta-lactamase [Alicycliphilus denitrificans K601] gi|317115693|gb|ADU98181.1| Beta-lactamase [Alicycliphilus denitrificans BC] gi|329308362|gb|AEB82777.1| Beta-lactamase [Alicycliphilus denitrificans K601] Length = 387 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 95/277 (34%), Positives = 147/277 (53%), Gaps = 13/277 (4%) Query: 11 AMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A + + P + A+ + P Y L+D G V+A D P ASLTKLMT Y+V Sbjct: 12 ACAALMAPAILWAQAPQPPEIAARNYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLV 71 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L+ KK L + +S+ A + P S + +D+ LK +IV+S ND +A+AE Sbjct: 72 FDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDATMALAE 131 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + T + FV+ MN +K LG+ T + N G+ + GH TTARD+A L+ R+ DFP+YM Sbjct: 132 GVGGTAENFVRLMNEQAKALGMKNTAYKNPEGLTEPGHTTTARDLATLATRLIQDFPEYM 191 Query: 186 HYFQIKGLEIKGKKYPNTNW---AVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQ 237 HY+ K +G N+N + DG+KTG T A+G+ +VA++ + + Sbjct: 192 HYYSTKQYRYEGTPASNSNNRNTLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQR 251 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 L++++LGA N+R S LL+ G+ K + Sbjct: 252 RLLSIVLGAASENSRANESQKLLNWGYTAFDAVKLFD 288 >gi|76808683|ref|YP_332034.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b] gi|134279982|ref|ZP_01766694.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305] gi|167822505|ref|ZP_02453976.1| penicillin-binding protein 6 [Burkholderia pseudomallei 9] gi|217420171|ref|ZP_03451677.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226193704|ref|ZP_03789307.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei Pakistan 9] gi|254258059|ref|ZP_04949113.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1710a] gi|76578136|gb|ABA47611.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b] gi|134249182|gb|EBA49264.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305] gi|217397475|gb|EEC37491.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225934282|gb|EEH30266.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei Pakistan 9] gi|254216748|gb|EET06132.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1710a] Length = 437 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|154686590|ref|YP_001421751.1| DacF [Bacillus amyloliquefaciens FZB42] gi|63146679|emb|CAG28930.1| penicillin binding protein [Bacillus amyloliquefaciens FZB42] gi|154352441|gb|ABS74520.1| DacF [Bacillus amyloliquefaciens FZB42] Length = 389 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 161/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + + + +L + A+ + + L++ +TG ++ Sbjct: 1 MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E+ FV MN +K LGL T F N G+ + HY++A DMA Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKDHYSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 ++ + Q+ ++ ++ K NTN + + G DG+KTGFT + + Sbjct: 181 KMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNL 285 + A+A +G+ +IAV+ GA RN +L F K + I+ + Sbjct: 241 LTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQFKTHPLYKRDQIVGTVKVKKG 300 Query: 286 SNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 ++ + SE + K+ N + KE K + +K +L + + KK Sbjct: 301 KQKLIKLTTSEPISLLAKKGENMDKVKKEVKINGNVTAPVKKGEVLGSLVLKK 353 >gi|322383131|ref|ZP_08056958.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152793|gb|EFX45419.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 414 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 33/339 (9%) Query: 16 IFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + A+ N++P L++ NTG V+ EN D PAS++K+MT Y++ +K Sbjct: 10 FVSSAAAADANEIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTEYLIMEAIK 69 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + K + +SK A+ S +G +++ + + + S+ND +VA+AE L T Sbjct: 70 DGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVAMAEYLGGT 129 Query: 131 EKKFVQHMNNTSKNLGLS-ATHFMNAHGVV--QHGHY----------TTARDMAILSWRI 177 E++F MN +K LGLS HF+NA G+ G Y TARD AIL+ I Sbjct: 130 EEEFANMMNKKAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARHI 189 Query: 178 KTDFPQYMHYFQIKGLEIK---GKKYPNTNWAV-----------GTFLGADGMKTGFTCA 223 D PQ + + + +++ N NW + + G DG+KTG T Sbjct: 190 VLDHPQVLEFTKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNE 249 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 +G+ +A +GD LI+V++G R + + +L GF N RK ++ +Q Sbjct: 250 AGYCFTGTAQRGDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLD-ANAPVEEQ 308 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322 + +E+ KE +++ + K + +D Sbjct: 309 KTVKISKGVKKEIEAGVKEPVSFVVKKGSGDVKVTGKVD 347 >gi|83718804|ref|YP_440938.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|257140407|ref|ZP_05588669.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gi|83652629|gb|ABC36692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 436 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 68 APGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 127 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 128 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 187 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 188 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFT 247 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 248 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGET 307 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 308 KESDRVQDSMKMLNYGYTAFDSVRL 332 >gi|251796348|ref|YP_003011079.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] gi|247543974|gb|ACT00993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] Length = 405 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 9/284 (3%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 S+ L+D ++G VI E + PAS+TK+MT ++ L + K LT Sbjct: 46 TASLDLAPSARSAVLMDADSGTVIYEKDSNVKLPPASITKVMTMLLIMEALDDGKIKLTD 105 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + S+ A+ S + G MT+D LK + + S ND +VA+AE L +E++FV M Sbjct: 106 KVPTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQQFVVMM 165 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGL 193 N ++ LGL THF N +G+ HYT+A D+A++S + + Y ++ Sbjct: 166 NEKAQQLGLQNTHFANCNGLPAADHYTSAHDIAVMSRELLK-HSEITKYTGSYQDYLRKT 224 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 K NTN V + GADG+KTGFT + F + A+A + + +IAV++G + TRN Sbjct: 225 SEKPFWLVNTNKLVRFYSGADGLKTGFTNEAKFCLTATAKRDNLRVIAVVMGEPNTKTRN 284 Query: 254 KVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISE 294 + +L F T K+ + + ++ E+P +++ Sbjct: 285 AEVSQMLDFTFAQYTTHPIFKEGDTMGTIKVEKGAVREIPLVAK 328 >gi|269966371|ref|ZP_06180456.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269828958|gb|EEZ83207.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 390 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 130/264 (49%), Gaps = 5/264 (1%) Query: 7 IIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A++ L+ P + A Y L+D +TG V+ E NPASLTKLMTAYV Sbjct: 16 FAAVSSLAYAAPSVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVA 75 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + L + IS+NA S + ++++L + + LIV+S ND +VA Sbjct: 76 GQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVA 135 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE + +E FV MN+ + L LS T F N HG+ G Y+T D+A L I D P Sbjct: 136 IAEHVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLP 195 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + G N N + + DGMKTG+T +G+++ SA QGD LIA Sbjct: 196 DIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQGDMRLIA 255 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 V++GA N R S LLS GF Sbjct: 256 VVMGAKSENVRESESKQLLSYGFR 279 >gi|319651421|ref|ZP_08005550.1| DacF protein [Bacillus sp. 2_A_57_CT2] gi|317396952|gb|EFV77661.1| DacF protein [Bacillus sp. 2_A_57_CT2] Length = 387 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 21/354 (5%) Query: 1 MRQF--LVIIAMAMLSNIFPF-----LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ L++I + M + P S + + L++ +TG ++ E P Sbjct: 1 MKRLVSLMLITLLMATIFVPSGFARESSADLADNVKSAILIERDTGSILYEKNSGEQLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + E K I S+ A+ S + G MT L+ + + Sbjct: 61 ASMTKVMTMLLIMEAIDEGKLSWDEKIRTSEYAASMGGSQIFLEPGEEMTTKQMLQGIAI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE + +E+ FV+ MNN +K LGL T+F N G+ HY+TA DMAI+ Sbjct: 121 GSGNDASVAMAERIAGSEEAFVEMMNNKAKELGLKNTNFQNPTGLSAKEHYSTAHDMAIM 180 Query: 174 SWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + + + + + + K NTN V + G DG+KTGFT + + + Sbjct: 181 AKELLK-YEKITDFTGTYEAYLREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTSEAKYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQ 282 A+A + +IAV+ GA RN +L F + + + Sbjct: 240 TATAEKDGMRVIAVVFGAPTSKERNAQVTKMLDYAFSQYKTHPMYERNHVLGKVAVSKGE 299 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + + + + T + E I + K +K + +K + KK Sbjct: 300 KKMVEALTSEPISLLTKKGESIE-EIEQKVTLNK-NIKAPVQKGDQIGTLTLKK 351 >gi|253990639|ref|YP_003041995.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782089|emb|CAQ85253.1| penicillin-binding protein 5 precursor [Photorhabdus asymbiotica] Length = 428 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 19/298 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETN-----------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 V + +A+ N+ F + + N Y L+D N+G V+AE D +PA Sbjct: 38 VTLGIALAMNVSAFANGNDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADSHRDPA 97 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNAL 108 SLTK+MT+YV+ +K K +T+ +A S K G +++ Sbjct: 98 SLTKMMTSYVIGQAIKSGKIGPNDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVSMLS 157 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 + + ++S ND VA+A+ + +++ FV MN K+LGL T+F HG+ G Y++AR Sbjct: 158 RGINLQSGNDACVAMADYVAGSQESFVNLMNGYVKSLGLQNTNFKTVHGLDAEGQYSSAR 217 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFN 227 DMA++ + D P+ ++ K + N N + L DG+KTG T A+G+N Sbjct: 218 DMALIGQALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTNAAGYN 277 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +VASA +GD LI+ +LG R S LL+ GF + K+F + + Sbjct: 278 LVASATEGDMRLISAVLGGHTYKGRETESKKLLTWGFRFFETVAPL-KADKEFASEPV 334 >gi|182678513|ref|YP_001832659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634396|gb|ACB95170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 394 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 7/276 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R+ L+I + P + A+ P L++ TG V+ E PD P PAS K+ Sbjct: 6 RRILLIPFLLSGFLAGPIAARAQGIDTSAPNVILIEAETGGVLFEKNPDAPVIPASTAKI 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 MTA +VF L+E + L IS+ A S+ S + +++ ++ L++ Sbjct: 66 MTAELVFQNLREGRIHLDDTFLISETAWRQGGAPSRGSSMYAALNSHVRVEDLIRGLVID 125 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A+A+AE L +E F M ++ LGL + F NA G TARDMA L+ Sbjct: 126 SGNDAAIALAEGLAGSEGAFATLMTKRARELGLDHSVFTNAWGRGDPDQLVTARDMARLA 185 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + T +P Y YF K + N N + GADG+KTG ASG+ +V SA+Q Sbjct: 186 AHVITTYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDFGADGLKTGNIDASGYGLVGSAVQ 245 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + LI + GA + R + L GF + T + Sbjct: 246 NGERLILALYGAKNAKERADEARRLFLWGFRSFTTK 281 >gi|47779364|gb|AAT38593.1| predicted penicillin-binding protein 6 precursor [uncultured gamma proteobacterium eBACHOT4E07] Length = 382 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 152/300 (50%), Gaps = 3/300 (1%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+Q FL ++ ++ + F+ A L Y L++ +T VIAE+ PAS+TK+ Sbjct: 1 MKQIFLFLLCVSNIVVGQSFVPNAPELNLKSYMLIEPDTNTVIAESNASGLIEPASMTKV 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAYVV +K L + IS+ A S + G +++ + LK +I++S ND Sbjct: 61 MTAYVVADQIKNDLISLDDSVLISEKAWRMGGSKMFIEVGKRVSILDLLKGIIIQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + TE FV MN+ + LG++ T F+N+ G+ GH T+ARD+A L+ T Sbjct: 121 SVAIAEYVGGTEAGFVDLMNSYAGALGMADTTFINSTGLPNEGHLTSARDLATLTSNFMT 180 Query: 180 DFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +FP F+ K E G N N + +DG+KTG T ++G+ ++ SA +G+ Sbjct: 181 NFPDIYALFKEKEFEYGGITGNKYNRNKLLWRDESSDGVKTGHTSSAGYCLIGSAKRGNM 240 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 LI V+ G+ N + LL GF +K + + + + NIS V Sbjct: 241 RLITVVAGSDTANNSFSDTQRLLEYGFRFYATQKYFDADKEYTTAKVWGGKNDNISLGVV 300 >gi|240139670|ref|YP_002964147.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens AM1] gi|240009644|gb|ACS40870.1| putative penicillin binding protein, beta-lactamase/transpeptidase-like superfamily [Methylobacterium extorquens AM1] Length = 403 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 7/273 (2%) Query: 7 IIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 ++A + + + P + A+T + L+D ++G V+ E D P++PAS+ KLMTA + Sbjct: 1 MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60 Query: 65 VFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF +KE + + T T++++A S+ + S + L + L+ LIV+S ND Sbjct: 61 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ + Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L Sbjct: 181 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 I V+ G R + ++ GF R+ Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQV 273 >gi|94309170|ref|YP_582380.1| penicillin-binding protein 6 [Cupriavidus metallidurans CH34] gi|93353022|gb|ABF07111.1| D-alanyl-D-alanine carboxypeptidase [Cupriavidus metallidurans CH34] Length = 397 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 17/300 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L D +G +A D PASLTKLMTAY+ F LKEK+ L +T + Sbjct: 37 PQVAAKSWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVTPT 96 Query: 84 K--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + S + G +++ + L LIV+S ND ++A+AE++ +E+ FV MN Sbjct: 97 DIVRKVKSDESRMFIEAGKPVSVQDLLLGLIVQSGNDASLALAEAVGGSEEGFVVMMNRE 156 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF N GV HYTTA D+AIL+ R+ DFP+Y + K + P Sbjct: 157 AQRMGMKNTHFTNTDGVPDPNHYTTAVDLAILTTRLIKDFPEYYSMYSQKEFTYNKIRQP 216 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254 N N + DG+KTG T ++G+ +++SA + G + L+++++G R + Sbjct: 217 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLVSIVIGTATEQIRTQ 276 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 S +L+ GF + Y + P+I + T K + T + K Sbjct: 277 ESLKILNYGFQFFDTLR--------LYDKGQVLATPDIYKGKTGTIKIGVANETFVTVPK 328 >gi|53724944|ref|YP_101907.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|52428367|gb|AAU48960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] Length = 403 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 35 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 94 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 95 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 154 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 155 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 214 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 215 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 274 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 275 KESDRVQDSMKMLNYGYTAFDSVRL 299 >gi|113866332|ref|YP_724821.1| D-alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia eutropha H16] gi|113525108|emb|CAJ91453.1| D-Alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia eutropha H16] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/300 (29%), Positives = 141/300 (47%), Gaps = 17/300 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L D +G +A D PASLTKLMTAY+ F LKEK+ L + + Sbjct: 39 PQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98 Query: 84 KNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + S + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN Sbjct: 99 SVVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + P Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIRQP 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254 N N + DG+KTG T ++G+ +++SA + G + LI++++G R + Sbjct: 219 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQ 278 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 S +L+ GF + Y + P+I + T K + T + K Sbjct: 279 ESLKILNYGFQFFDTLR--------LYDKGQVLATPDIYKGKSGTVKIGVQNETFVTVPK 330 >gi|71898423|ref|ZP_00680595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] gi|71731736|gb|EAO33795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] Length = 347 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 154/318 (48%), Gaps = 16/318 (5%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D +G V+A PASLTK+MT+YV+ + +K K + +++NA Sbjct: 1 MDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ +G+ Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGMK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N + Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLLW 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEV-----CTTQKEIIN-YNTQMKEAKD-----KE 317 + +V + V T Q+ N ++ ++ K Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300 Query: 318 SHFIDFEKITLLKNKITK 335 + K+TL + + Sbjct: 301 GQLVGKVKVTLDGKVVAQ 318 >gi|332874743|ref|ZP_08442613.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] gi|332737004|gb|EGJ67961.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] Length = 397 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 16 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 75 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 76 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 135 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 136 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLA 195 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 196 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 255 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F ++N Sbjct: 256 GPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQV 315 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 316 GLAENFNVTMPKGKADGIKTQLVVQPNLSAPLQKGQVVGKLVASLDGKVIAEK 368 >gi|332857068|ref|ZP_08436374.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332870006|ref|ZP_08438982.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] gi|332726883|gb|EGJ58397.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332732506|gb|EGJ63757.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] Length = 397 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 16 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 75 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 76 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 135 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 136 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLA 195 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 196 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 255 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F ++N Sbjct: 256 GPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQV 315 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 316 GLAENFNVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 368 >gi|220931542|ref|YP_002508450.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] gi|219992852|gb|ACL69455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] Length = 397 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 10/270 (3%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+ NTG ++ E P PAS+TK+MT +V L++ +A L I +S+ A+ Sbjct: 39 AKSALLMQVNTGEILYEKNPHQKLPPASMTKIMTMLLVMEALEDGRASLRDSIIVSERAA 98 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + G MTL++ +K + + SAND VA+AE L TE+ FV+ MN ++ LG Sbjct: 99 SMGGSQVYLEPGEEMTLEDLMKAIAIASANDACVAVAEYLYGTEEDFVKKMNEKARELGC 158 Query: 148 SATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 T+F N +G+ G+YT+A D+AI+S + +P+ + + ++ ++ Sbjct: 159 KNTYFYNTNGLPPGDPSVEGNYTSAYDLAIMSRELLK-YPEVLKWTSTWIDYLRDGEFVL 217 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN V + G DG+KTG+T + F + +A + IAVI+GA R K +A LL Sbjct: 218 NNTNRLVRHYKGVDGIKTGYTEEAKFCVATTAARNGIRFIAVIMGADTSKARFKEAAQLL 277 Query: 261 SMGFYNKTDRKKIN--YIIKDFYQQNLSNE 288 S GF + +I + QN NE Sbjct: 278 SYGFSKYRSFIVADKEEVIDEITIQNAKNE 307 >gi|153820129|ref|ZP_01972796.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457] gi|255745929|ref|ZP_05419876.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262163513|ref|ZP_06031259.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] gi|262168229|ref|ZP_06035927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|126509329|gb|EAZ71923.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457] gi|255735683|gb|EET91081.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262023472|gb|EEY42175.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|262028080|gb|EEY46739.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] Length = 378 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 131/267 (49%), Gaps = 6/267 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +A + E +L Y L+D +TG V+ E+ NPASLTKLMT+ Sbjct: 1 MACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTS 60 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV +K + IS NA S + G+ + L + + LIV+S ND Sbjct: 61 YVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+L I Sbjct: 121 SVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALLGRAIIR 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + G N N + + DGMKTG+T +G+++ +SA G+ Sbjct: 181 DLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265 LI+V++G+ +R S LLS GF Sbjct: 241 LISVVMGSKSVKSREAESKQLLSYGFR 267 >gi|184158962|ref|YP_001847301.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|183210556|gb|ACC57954.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|322508944|gb|ADX04398.1| dacC [Acinetobacter baumannii 1656-2] gi|323518930|gb|ADX93311.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii TCDC-AB0715] Length = 382 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F ++N Sbjct: 241 GPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQV 300 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 301 GLAENFNVTMPKGKADGIKTQLVVQPNLSAPLQKGQVVGKLVASLDGKVIAEK 353 >gi|167462561|ref|ZP_02327650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381758|ref|ZP_08055712.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154146|gb|EFX46468.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 392 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 14/320 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T LLD +TG +I+E D PAS+TK+MT ++ + + + + S+ Sbjct: 37 TPNAKSAILLDADTGTIISEKDKDAKLPPASITKIMTMLLIMEAVDKGTLKMDEKVRTSE 96 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G MT++ LK + + S ND +VA+AE + TE+ FV+ MN +K Sbjct: 97 YAASMGGSQIFLEPGEEMTVEEMLKGIAMASGNDASVAMAEKIAGTEEDFVRMMNERAKQ 156 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKK 199 LG+ THF N +G+ HY+TA D+A++S + + + ++ K Sbjct: 157 LGMKNTHFANCNGLPAENHYSTAYDIALMSRELLK-HEKITAFTGAYQDYLRKDSEKPFW 215 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + GADG+KTGFT F + A+A + + +IAV++G D TRN L Sbjct: 216 LVNTNKLVRFYNGADGLKTGFTSEEKFCLAATAKRDNLRMIAVVMGEPDTKTRNAEVTKL 275 Query: 260 LSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 F T+ K + I + EVP I++ ++ ++ KE Sbjct: 276 FDYSFSQYTNYPIFKAGDQIGSFRVGKGKVQEVPLIAKHPYG----VLLKKSEGKEGIRH 331 Query: 317 ESHFI-DFEKITLLKNKITK 335 E + D + I K Sbjct: 332 EVQILPDLKAPVQAGEPIGK 351 >gi|169795187|ref|YP_001712980.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii AYE] gi|213158149|ref|YP_002320200.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Acinetobacter baumannii AB0057] gi|215482735|ref|YP_002324933.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB307-0294] gi|239501150|ref|ZP_04660460.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB900] gi|260556667|ref|ZP_05828885.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606] gi|301346852|ref|ZP_07227593.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB056] gi|301511131|ref|ZP_07236368.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB058] gi|301596416|ref|ZP_07241424.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter baumannii AB059] gi|169148114|emb|CAM85977.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii AYE] gi|193077945|gb|ABO12853.2| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii ATCC 17978] gi|213057309|gb|ACJ42211.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase) [Acinetobacter baumannii AB0057] gi|213987778|gb|ACJ58077.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii AB307-0294] gi|260409926|gb|EEX03226.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606] Length = 382 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F ++N Sbjct: 241 GPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQV 300 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 301 GLAENFNVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 353 >gi|262366391|gb|ACY62948.1| penicillin-binding protein 5 [Yersinia pestis D182038] Length = 335 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 64 PQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVG 123 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 124 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 183 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 184 MNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 243 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+V+LG R S Sbjct: 244 IRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETES 303 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 304 KKLLTWGFRFFETVAPL-KVGKEFASEPV 331 >gi|257413914|ref|ZP_04744661.2| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257201876|gb|EEV00161.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 402 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 143/273 (52%), Gaps = 17/273 (6%) Query: 9 AMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + + + P A+T+ P L++ +TG V+ E +PAS+TK+ Sbjct: 21 SCFIPNVTIPLSPAAQTDTAPAADLNISAPSAILMEASTGAVVYEKNSHEARHPASVTKI 80 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT ++F L K+ L +T+S+ A+ S + G T T++ +K + V SAND Sbjct: 81 MTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQVFLEPGETQTVETMIKCISVASANDA 140 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VA+AE + +E +FV+ MN +K LG++ T+F+N G+ GH T+A D+A++S + T Sbjct: 141 CVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSANDIALMSRELIT 200 Query: 180 DFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +P+ Y I I NTN + + A G+KTGFT + + I A+ Sbjct: 201 KYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGFTNTAMYCISAT 260 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 A + D LIAVI+GA D +R+ + +LL+ GF Sbjct: 261 AKKDDMELIAVIMGAPDIKSRSADATTLLNYGF 293 >gi|163752391|ref|ZP_02159585.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99] gi|161327728|gb|EDP98916.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99] Length = 348 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90 +D NTG +IAE NPASLTK+MT+YV+ +K +TISK A Sbjct: 1 MDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPEDEVTISKKAWSKNFPD 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G +T+D+ +I++S ND VA+AE + TE FV MN+ + LG+ + Sbjct: 61 SSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAIQLGMKDS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-T 209 F N+HG+ H +TA DMA+L + D P ++ K G K N N + Sbjct: 121 FFENSHGLDAKNHKSTAYDMALLGAALIRDVPDEYAVYKQKSFTYNGIKQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DG+KTG T +G+N+V SA + LI+V++G N R S LL+ GF Sbjct: 181 SMNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSENARKAESKKLLNYGFRFFET 240 >gi|328469382|gb|EGF40328.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329] Length = 385 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 9/281 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE+ PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G LI+V++G + R S +LLS GF D K++ Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFR-FYDTKQV 280 >gi|260438046|ref|ZP_05791862.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292809525|gb|EFF68730.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 385 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 141/276 (51%), Gaps = 11/276 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ I +L +S+ L++ +TG +I E+ PD PAS+T Sbjct: 1 MKKVFSFIISFILILSSAHISVTADELSLTSKSAILMEASTGKIIYEHNPDEILRPASIT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT ++F + + + + +T+S++A+ S + G T T++ +K + + SAN Sbjct: 61 KIMTLILIFDAIHDGRIKMDDTVTVSEHAASMGGSQVFLEAGETQTVETLIKCIAIASAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +E+ FV HMN +K L ++ T+F+N G+ H TTARD+A++S + Sbjct: 121 DACVAMAEYIDTSEENFVAHMNERAKGLSMTNTNFVNCCGLDADNHVTTARDVALMSKEL 180 Query: 178 KTDFPQYMHYFQIKGLEIK--------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +P+ + I I NTN + + A G+KTG T +GF + Sbjct: 181 INKYPEIHNISTIWMDTITHVTRRGESDFTLTNTNKLIKQYEWATGLKTGSTSLAGFCLS 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 A+A + D LI+V++ + D +R S LL+ G+ Sbjct: 241 ATAKRNDIELISVVMASKDGKSRVADSIKLLNYGYS 276 >gi|251790547|ref|YP_003005268.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya zeae Ech1591] gi|247539168|gb|ACT07789.1| Beta-lactamase [Dickeya zeae Ech1591] Length = 403 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 2 RQFLVIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 ++ + +A+ ++ F + Y L+D N+G V+AE D N Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADTRRN 70 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTK+MT+YV+ +K K +TI K+A S K G + + Sbjct: 71 PASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQFSS 190 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 ARDMA++ + D P ++ K + N N + + L DG+KTG T ++G Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAG 250 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +N+VASA +G LI+ ++G R S LL+ GF + Sbjct: 251 YNLVASATEGQVRLISAVMGGRTFKGREAESKKLLTWGFRFFETVAPL 298 >gi|67642413|ref|ZP_00441170.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|121598771|ref|YP_991575.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124385285|ref|YP_001027352.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10229] gi|126449591|ref|YP_001082709.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10247] gi|126454122|ref|YP_001064741.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1106a] gi|167003222|ref|ZP_02269012.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] gi|242314349|ref|ZP_04813365.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1106b] gi|254176979|ref|ZP_04883636.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|254202020|ref|ZP_04908384.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|254207352|ref|ZP_04913703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|254357610|ref|ZP_04973884.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|121227581|gb|ABM50099.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|124293305|gb|ABN02574.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10229] gi|126227764|gb|ABN91304.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1106a] gi|126242461|gb|ABO05554.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10247] gi|147747914|gb|EDK54990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|147752894|gb|EDK59960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|148026674|gb|EDK84759.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei 2002721280] gi|160698020|gb|EDP87990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 10399] gi|238523562|gb|EEP87000.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|242137588|gb|EES23990.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 1106b] gi|243061219|gb|EES43405.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] Length = 437 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|225374869|ref|ZP_03752090.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM 16841] gi|225213252|gb|EEG95606.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM 16841] Length = 421 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 8/248 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P L++ +TG ++ E PAS+TK+MT ++F ++ + L +T+S+ A Sbjct: 67 SAPSVLLMEASTGTILYEKNSHTVLRPASITKIMTLILIFDAIESGQISLEDTVTVSEYA 126 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + T T+D +K + + SAND VA+AE +C +E FV+ MN +K LG Sbjct: 127 ASMGGSQVFLEPNETQTVDTMIKCISIASANDACVAMAEFICGSEAAFVEKMNERAKGLG 186 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ T F+N G+ GH T+A D+A++S + T +PQ Y I I Sbjct: 187 MNDTTFVNCCGLDVDGHMTSAYDVALMSRELTTKYPQIHDYSTIWMDTITHVTRRGSEEF 246 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + A G+KTG T + + + A+A++ LIAV++ A D R +A+ Sbjct: 247 GLTNTNKLIRQYQYATGLKTGSTSLAKYCVSATAVKDGMELIAVVMAAPDFKIRFADAAT 306 Query: 259 LLSMGFYN 266 LL+ GF Sbjct: 307 LLNYGFSK 314 >gi|296332281|ref|ZP_06874743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674982|ref|YP_003866654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150595|gb|EFG91482.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413226|gb|ADM38345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 389 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 164/354 (46%), Gaps = 19/354 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ L + + ++ F + A+ ++ L++ +TG V+ + Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKGTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+MT ++ L E K ++ + S++A+ S + G MT+ LK + Sbjct: 61 APASMTKIMTMLLIMEALDEGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + S ND +VA+AE + +E++FV+ MN ++ LGL T F N G+ + GH+++A DMA Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKARELGLKNTSFKNPTGLTEEGHFSSAYDMA 180 Query: 172 ILSWRIKTD--FPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 I++ + ++ ++ ++ K NTN + + G DG+KTG+T + + Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQ 282 + ASA +G+ IAV+ GA RN +L F R +I +K Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDFAFSQYETHPLYKRNEIVAKVKVKKG 300 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + E+ SE + K+ + KE K ++ +K L + KK Sbjct: 301 KQKFIELTT-SEPISILTKKGEDMKNVKKEIKLNDNVSAPVQKGQELGTLVLKK 353 >gi|269960275|ref|ZP_06174649.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834886|gb|EEZ88971.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 388 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 142/296 (47%), Gaps = 8/296 (2%) Query: 5 LVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + + + + P L++ + Y L+D +G +IAE PASLTKLM Sbjct: 8 ITLTCLLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 TAYVV +K + +T+S+NA S + +T+ N ++ +I++S N Sbjct: 68 TAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L I Sbjct: 128 DACVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSI 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P+ + K + N N + + DG KTG+T +G+++V+SA QG Sbjct: 188 INDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGK 247 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 LI+V++G + +R S +LLS GF ++ + +V I Sbjct: 248 MRLISVVMGTPSKQSRISQSKNLLSYGFRFYDTKQVAKQGEVQASAKVWKGDVSEI 303 >gi|238785719|ref|ZP_04629693.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] gi|238713359|gb|EEQ05397.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC 43970] Length = 383 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 22 PQIDAEAYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 81 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 82 KDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 141 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 142 MNNYVNALGLKNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 201 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA G LI+ +LG R S Sbjct: 202 IRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRTYKGRETES 261 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 262 KKLLTWGFRFFETVAPL-KVGKEFASEPV 289 >gi|188580422|ref|YP_001923867.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179343920|gb|ACB79332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 499 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 3/270 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PP Sbjct: 31 LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPP 90 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ + Sbjct: 91 SKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESR 150 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + N +G+ + +T+ARDMAIL+ + DFP F I ++ N N +G + Sbjct: 151 WYNPNGLPEPRQWTSARDMAILARALMRDFPNQQALFSISAIQFGKSVMANHNGLLGRYP 210 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF C+ GFN+VA+A +G + +IAV++G R+ +A L GF Sbjct: 211 GADGMKTGFICSGGFNVVATATRGGRRIIAVVMGQPSARERDIKAADLFDYGFGQSAG-- 268 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 ++ N++ P++ +C +K Sbjct: 269 WTAPTLESLPPSNVAA-PPDMRPYICDKRK 297 >gi|254360903|ref|ZP_04977049.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] gi|153092382|gb|EDN73445.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica PHL213] Length = 392 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 157/353 (44%), Gaps = 18/353 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI---------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ LV + + A Y L+D N+G V+ PD Sbjct: 1 MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMDYNSGEVLVSLNPDQRQ 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 PASLTK+MT+YVV LK K + + +++N+ S S +++ + Sbjct: 61 YPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPGSSLMFLDLNSKVSVGELM 120 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 K LI+ S ND +VA+AE + ++ F+ MN ++ GL THF HG+ Y++AR Sbjct: 121 KGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLKNTHFTTVHGLDDPEQYSSAR 180 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVG-TFLGADGMKTGFTCASGF 226 DMAI+ I D P+ + K + KK PN N + + DGMKTG T +G+ Sbjct: 181 DMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 N+VASAI + LI+V++G R S LL GF N K I Q Sbjct: 241 NLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFANFETIKSIPAAQSVAEQSVYY 300 Query: 287 NEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 EV + ++ T + + + + + +K++ K ++ I + Sbjct: 301 GEVNKVQLGSVQDSFVTIPKGRSADLKARYELEKKNLEAPLAKGQVVGKMIYQ 353 >gi|332970912|gb|EGK09888.1| D-alanyl-D-alanine carboxypeptidase DacA [Psychrobacter sp. 1501(2011)] Length = 412 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 169/339 (49%), Gaps = 18/339 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASL 56 + FL+ ++ +S+ S+A T P Y L+D +TG ++AE D P PASL Sbjct: 34 KSFLLGSSILAVSS----ASLAATVPPPEMDNTAYILMDYDTGAILAEKNADQPLPPASL 89 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIV 113 TK+MT++++ L + P+ +S+NA S+ + ++ + L+ +I+ Sbjct: 90 TKMMTSHIIEKKLMSGELKEDEPVIMSENAWCRGTSDQSCMYVPVHKSASVIDMLRGIII 149 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND + A+AE + +E+ F Q MN +K LG++ T+F+NA G+ H+ +ARD+AIL Sbjct: 150 QSGNDASKAMAEHIAGSEQAFAQLMNAEAKELGMTNTNFVNATGMPDENHHASARDLAIL 209 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I Y + K N N + T DG+KTG T A+G+ + AS++ Sbjct: 210 ARAIIKQGGDYYKIYSEKEFTYNNITQGNRNALLRTDPTVDGLKTGHTDAAGYCLAASSL 269 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSN 287 + D LI+VI+G+ R S LL+ GF + + + + ++ + F ++N Sbjct: 270 RNDMRLISVIMGSKSMQARADQSRELLNWGFGHFSTKVVAPANQFVDTVPVYFGEKNEVK 329 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + +V + + +T + + D ++ +++ Sbjct: 330 VATGETLKVLVAKTQSDKVSTVINMSDDIQAPIAKGQEV 368 >gi|288555970|ref|YP_003427905.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288547130|gb|ADC51013.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] Length = 386 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 19/334 (5%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+ L ++A+ ++ + + A +++ +TG V+ E P Sbjct: 1 MRKVLSTLLAIVLVCTLAAPMGYAAEKQASLAENASSAIVIERDTGEVLFEKNSHDQLPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MT ++ + E I S+NA+ S + G MT+ + LK + V Sbjct: 61 ASMTKIMTMLLIMEAIDEGSLSYDDKIRTSENAASMGGSQVFLEPGEEMTVTDMLKAIAV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND +VA+AE L TE++FV MN+ +K LGL T+FMN++G+ HYTTA D+A++ Sbjct: 121 ASGNDASVAMAEHLGGTEEEFVSMMNDKAKELGLENTNFMNSNGLPAENHYTTAYDLAMI 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 S + + + I + NTN V + G DG+KTGFT + + + Sbjct: 181 SKELLK-YEDITKFTGIYEDYLRQDSENKFWLVNTNKLVKFYPGVDGLKTGFTREAMYCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNL 285 A+A + D +I+VI+GA RN +L F K + + + + + Sbjct: 240 TATAQKNDMRVISVIMGAPTPKERNAQITEMLDYSFSQFKTHKLYERDHILAEVKVSKGD 299 Query: 286 SNEVPNISEE---VCTTQKEIINYNTQMKEAKDK 316 N++P + E + T + E I+ T+ E + Sbjct: 300 KNQIPVQTSESVSILTKKGESIDDVTERMEIDQQ 333 >gi|90424200|ref|YP_532570.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90106214|gb|ABD88251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 418 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 10/297 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L++ +TG V+ E D P+S+ KLMT +VF L++ LT +S+ Sbjct: 55 DVDAPTAILVEASTGSVLYEKNADELRAPSSMMKLMTVELVFRALQQGDIKLTDQYQVSE 114 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 NA S + S + +++ L+ IV+S ND + AE+L E+ F + + Sbjct: 115 NAWRKGGAPAGNSTMFAEIHSRIAVEDLLRGAIVQSGNDACMVFAEALGGGERGFAELLT 174 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LGL+ + F N++G+ G+ + R++A L+ + +P++ F + + Sbjct: 175 KRARELGLAKSTFANSNGLPDPGNKMSVRELARLARHLIQTYPEFYKIFGEREFTWNKIR 234 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GADG+KTG+T G+ +V SA+Q LI VI G D + R + L Sbjct: 235 QTNRNPLLTMLDGADGLKTGYTKEGGYGMVGSAVQNGMRLIVVINGVEDIDDRASEAKKL 294 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 L GF N R N Y + E S V T E + Q K DK Sbjct: 295 LEWGFRNFESRALFNPQDAVGYAKVFGGE----SRSVKLTSTEPVRVMVQ-KNGSDK 346 >gi|307546895|ref|YP_003899374.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] gi|307218919|emb|CBV44189.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM 2581] Length = 494 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 144/242 (59%), Gaps = 1/242 (0%) Query: 24 ETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + N Y ++DT+T ++ D P PASLTK+MT Y++F L + L + + Sbjct: 41 QANNPRYAGIVVDTDTSEILYAENADAPRYPASLTKMMTLYMLFERLDQGGMTLGQRLPV 100 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S ASE P + K G ++ ++ A++ LIV+SAND+AV +AE+L +E F + M + + Sbjct: 101 SATASEMPATKLWLKPGDSIPVEKAIQALIVRSANDVAVVVAEALGGSESHFARMMTSRA 160 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG+S T F NA G+ TTARDMA+L+ R+ DFPQY YF + +GK Sbjct: 161 HELGMSNTTFRNASGLPDDRQVTTARDMALLARRLMLDFPQYYPYFSLDRFTWRGKTLTG 220 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + ++ GADG+KTGF ASGFN+ SA +G + +++V++G ++R++ A+LL Sbjct: 221 HNNLLDSYPGADGLKTGFIRASGFNVATSAKRGGRRILSVVMGGYTASSRDEHMANLLDR 280 Query: 263 GF 264 GF Sbjct: 281 GF 282 >gi|152978379|ref|YP_001344008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus succinogenes 130Z] gi|150840102|gb|ABR74073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus succinogenes 130Z] Length = 395 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 5/279 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y L+D N+G V+A PD PASLTK+MT+Y V +K+ K +TI Sbjct: 35 PPQLNAQTYILMDYNSGAVLAAFNPDQRQYPASLTKMMTSYAVGDAMKQGKIHPNDQVTI 94 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +++ S +++ + + +IV S ND VA+AE + + ++FV MN Sbjct: 95 GESSWGKNFPGSSKMFLNLNQQVSVADLNRGVIVVSGNDACVALAEHVSGSTEQFVALMN 154 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + GL T+F HG+ Y++ARDMA++ RI D P+ + K K Sbjct: 155 KYVQQFGLKNTNFTTPHGLDDPNQYSSARDMALIGIRIIHDLPEEYKIYAEKDFTFNKIK 214 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSA 257 PN N + + DGMKTG T +G+N+VASA + LI+V++G R S Sbjct: 215 QPNRNGLLWDKSMNVDGMKTGHTSQAGYNLVASATNANNMRLISVVMGVPTYKGREVESK 274 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 LL GF + K + Q E +++ V Sbjct: 275 KLLQWGFNSFDTFKTLEAGKAVGEQPVYYGEDGDVAVGV 313 >gi|260899720|ref|ZP_05908115.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] gi|308106862|gb|EFO44402.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AQ4037] Length = 385 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 9/281 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE+ PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G LI+V++G + R S +LLS GF D K++ Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFR-FYDTKQV 280 >gi|153839337|ref|ZP_01992004.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus AQ3810] gi|149747147|gb|EDM58135.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus AQ3810] Length = 385 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 9/281 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE+ PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G LI+V++G + R S +LLS GF D K++ Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFR-FYDTKQV 280 >gi|254181990|ref|ZP_04888587.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1655] gi|184212528|gb|EDU09571.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 1655] Length = 437 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|299769239|ref|YP_003731265.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. DR1] gi|298699327|gb|ADI89892.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. DR1] Length = 382 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 6/275 (2%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGLPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G LI+VI G N R + +LLS GF N Sbjct: 241 GPMRLISVIFGTDSVNERANQTRTLLSWGFANFET 275 >gi|294635241|ref|ZP_06713743.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] gi|291091358|gb|EFE23919.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC 23685] Length = 387 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 131/267 (49%), Gaps = 10/267 (3%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + FP + + L+D TG ++A+ PD NPASLTKLMT YVV L + + Sbjct: 22 SAFPL--VPPHIDAASWVLMDAQTGQILAQGNPDARRNPASLTKLMTNYVVERALDQGRI 79 Query: 75 MLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L P+ I +A S K G T+ + ++ +I+ S ND VA+A+ + Sbjct: 80 GLNDPVPIGNDAWATRNPSFKGSSLMFLKPGDKATVSDLIRGIIIDSGNDACVALADYVS 139 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 + FV+ MN + L L THF HG+ G Y++ARD+A L+ I Y H++ Sbjct: 140 GDQAGFVRLMNGYVQQLHLQNTHFETVHGLDAPGQYSSARDLAQLARAIILHEQPYYHFY 199 Query: 189 QIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGA 246 K L G N N + L DGMKTG T ++GFN+VAS+I Q LIAV++GA Sbjct: 200 AQKSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVASSIDPHGQRLIAVVMGA 259 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKI 273 R + LL G N + + Sbjct: 260 DSSRGREVQAKKLLQWGERNFETVQLV 286 >gi|91224062|ref|ZP_01259325.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] gi|91190973|gb|EAS77239.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] Length = 390 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 95/264 (35%), Positives = 131/264 (49%), Gaps = 5/264 (1%) Query: 7 IIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A++ L+ P + A Y L+D +TG V+ E NPASLTKLMTAYV Sbjct: 16 FAAVSSLAYAAPSVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVA 75 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + L + IS+NA S + ++++L + + LIV+S ND +VA Sbjct: 76 GQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVA 135 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE + +E FV MN+ + L LS T F N HG+ G Y+T D+A L I D P Sbjct: 136 IAEYVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLP 195 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + G N N + + DGMKTG+T +G+++ SAIQGD LIA Sbjct: 196 DIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSAIQGDMRLIA 255 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 V++GA N R S LLS GF Sbjct: 256 VVMGAKSENVRESESKQLLSYGFR 279 >gi|28901449|ref|NP_801104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|260363002|ref|ZP_05775871.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] gi|260880289|ref|ZP_05892644.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|260896672|ref|ZP_05905168.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|28809996|dbj|BAC62937.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD 2210633] gi|308085410|gb|EFO35105.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus Peru-466] gi|308091912|gb|EFO41607.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus AN-5034] gi|308112244|gb|EFO49784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio parahaemolyticus K5030] Length = 385 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 9/281 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE+ PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G LI+V++G + R S +LLS GF D K++ Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFR-FYDTKQV 280 >gi|156977862|ref|YP_001448768.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116] gi|156529456|gb|ABU74541.1| hypothetical protein VIBHAR_06653 [Vibrio harveyi ATCC BAA-1116] Length = 388 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 8/296 (2%) Query: 5 LVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + + + + P L++ + Y L+D +G +IAE PASLTKLM Sbjct: 8 ITLACLLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 TAYVV +K + +T+S+NA S + +T+ N ++ +I++S N Sbjct: 68 TAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + E FV MN + L L+ T+F+N+HG+ G T+ DMA L I Sbjct: 128 DACVALAEHVAGGEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSI 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P+ + K + N N + + DG KTG+T +G+++V+SA QG Sbjct: 188 INDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGK 247 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 LI+V++G + +R S +LLS GF ++ + V I Sbjct: 248 MRLISVVMGTPSKQSRITQSKNLLSYGFRFYDTKQVAKQGEVQASAKVWKGNVSEI 303 >gi|153832244|ref|ZP_01984911.1| penicillin-binding protein 6 [Vibrio harveyi HY01] gi|148871555|gb|EDL70410.1| penicillin-binding protein 6 [Vibrio harveyi HY01] Length = 388 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 142/296 (47%), Gaps = 8/296 (2%) Query: 5 LVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + + + + P L++ + Y L+D +G +IAE PASLTKLM Sbjct: 8 ITLACLLLQTFSAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 TAYVV + +K + +T+S+NA S + +T+ N ++ +I++S N Sbjct: 68 TAYVVGTEIKAGRLNWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L I Sbjct: 128 DACVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQAI 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K + N N + + DG KTG+T +G+++V+SA QG Sbjct: 188 INDVPDVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGK 247 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 LI+V++G + +R S +LLS GF ++ + +V I Sbjct: 248 MRLISVVMGTPSKQSRITQSKNLLSYGFRFYDTKQVAKQGEVQTSAKVWKGDVSEI 303 >gi|126732363|ref|ZP_01748163.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula stellata E-37] gi|126707232|gb|EBA06298.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula stellata E-37] Length = 479 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 5/297 (1%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 L +A ++D TG V+ D +PASLTK+MT Y+VF ++ + + Sbjct: 1 MALLPMAVKAAPYAAMVMDARTGKVLHAQNADTRLHPASLTKMMTLYIVFEAVQNGELTM 60 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T +T+SKNA+ PPS ++G + L ++ VKSAND A AI E++ +E F + Sbjct: 61 DTLVTVSKNAAAEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAVEGSEAAFAR 120 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN T+K +G++ T F NAHG+ GH +TARDM IL + D+P+Y + F + Sbjct: 121 RMNRTAKAIGMTRTTFKNAHGLTAEGHLSTARDMTILGRHVIYDYPEYYNLFSRVTADAG 180 Query: 197 GKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + +TN + ++ GADG+KTG+T A+GFN+VASA +G + +IA + G +RN Sbjct: 181 VRTVSHTNRRLLQSYKGADGIKTGYTRAAGFNLVASAERGRERVIATVFGGQSTASRNAK 240 Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIINYNT 308 A LL +GF R K Y + V N S+ T+ + I + Sbjct: 241 VAELLDLGFRESPTRVAFLAPGKPPYLGRGAGSGGIVVANTSDPAPGTRAKSIRVAS 297 >gi|255744731|ref|ZP_05418682.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262161135|ref|ZP_06030246.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] gi|255737762|gb|EET93156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101] gi|262028885|gb|EEY47538.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1] Length = 347 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90 +D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 1 MDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPD 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ + Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-T 209 HF N+HG+ Y+T D+A+L + D P+ + + G N N + Sbjct: 121 HFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFET 240 >gi|126441761|ref|YP_001057491.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 668] gi|237810642|ref|YP_002895093.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei MSHR346] gi|254187919|ref|ZP_04894431.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei Pasteur 52237] gi|126221254|gb|ABN84760.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] gi|157935599|gb|EDO91269.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei Pasteur 52237] gi|237504177|gb|ACQ96495.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei MSHR346] Length = 437 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|238795411|ref|ZP_04638926.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] gi|238720530|gb|EEQ12331.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC 43969] Length = 383 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 22 PQIDAEAYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 81 Query: 84 KNASE------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 82 KDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 141 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN LGL THF HG+ G +++ARDMA++ + D P ++ K Sbjct: 142 MNNYVNALGLQNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYTIYKEKEFTFNN 201 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T ++G+N+VASA G LI+ +LG R S Sbjct: 202 IRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRTYKGRETES 261 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 262 KKLLTWGFRFFETVAPL-KVGKEFASEPV 289 >gi|262277220|ref|ZP_06055013.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114] gi|262224323|gb|EEY74782.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114] Length = 378 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 18/339 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + II +S S A L+D +G V+ E + +PAS+TK+M Sbjct: 1 MIKKIFIICFLFIS----VKSSALETSAKQAYLIDVLSGEVLFEKNKEQKISPASITKIM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP---SNSTFKKGSTMTLDNALKLLIVKSAN 117 TA V F +K+ L +SKNA S+ ++++N LK +I+ S N Sbjct: 57 TAIVAFDLIKKGDLKLEEKFKVSKNAWRMSSKGFSSMFIMPNDRVSVENLLKGIIIVSGN 116 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +A+AE + TE++FV MNN ++ +GLS T F N+ G+ +Y+T D++ +S + Sbjct: 117 DACIALAEGIAGTEEEFVNMMNNMAEKIGLSNTRFANSSGIYDGNNYSTVEDISKMSIYL 176 Query: 178 KTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +FP Y+ K N N + +G DG+KTG+ SG+++ A+ Sbjct: 177 INNFPNLYKYYSEKKFTWDRTGGAPITQGNRNPILYKDMGGDGIKTGYLNNSGYSLAATI 236 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + D+ +++V+ G +N R++ + LLS N+ D KIN I K++ + N+ Sbjct: 237 KKNDRRILSVVSGTDSKNARSRETVRLLSYA-ENRFDLLKINKIDKNYKIKTW-----NL 290 Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 ++ + + Y T K K+K ID EK L Sbjct: 291 KQKTVQLELKNNIYLTIPKRKKNKLKIEIDHEKDILSSE 329 >gi|254509295|ref|ZP_05121387.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16] gi|219547783|gb|EED24816.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16] Length = 293 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 5/272 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + A + P + A Y L+D ++G V+AE + +PASLTK+MT Sbjct: 14 SIALSATFATSAIATPIVVPDAPQIAAKGYVLMDFHSGKVLAEKEMNTKLSPASLTKMMT 73 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +YV+ L+ L +TISKNA S + G+T+ +++ + +I++S ND Sbjct: 74 SYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGND 133 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L + Sbjct: 134 ACVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPDLYSTPYDMALLGSALI 193 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQ 237 D P + K G N N + + DG+KTG T +G+++V+SA +G Sbjct: 194 RDVPDEYRIYSEKKYTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKM 253 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 L+AV++G + N R S LLS GF Sbjct: 254 RLVAVVMGTKNANARKSESKKLLSYGFRFFET 285 >gi|169632895|ref|YP_001706631.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii SDF] gi|169151687|emb|CAP00477.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii] Length = 382 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKNAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F ++N Sbjct: 241 GPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQV 300 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 301 GLAENFNVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 353 >gi|149914154|ref|ZP_01902685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b] gi|149811673|gb|EDM71506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b] Length = 388 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 138/268 (51%), Gaps = 5/268 (1%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + + A + + D TG V+ D P PAS++KLMT YV F +++ + Sbjct: 16 VLVSPAAAFDTRATSAFVFDMKTGTVLLSKNADAPLPPASMSKLMTLYVTFEAIRDGRLS 75 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKK 133 L + +S++A + S + +++ L+ +IV S ND V +AE+L TE+ Sbjct: 76 LDDRLPVSQHAMSFGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTEQG 135 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 F ++M ++ +G++ + FMN+ G GH + RD+A+LS I DFP++ F Sbjct: 136 FARYMTQRAQQMGMTNSTFMNSSGWPAAGHRMSMRDLALLSRHIIEDFPEFYPMFAETKF 195 Query: 194 EIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 E G+ N N +G +GADG+KTG T +G+ +V SA QGD+ +I VI G R Sbjct: 196 EFDGRAPQNTRNRNPILGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLETRQ 255 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK 278 R + S ++++ F ++ + ++ Sbjct: 256 ARAEESEAIVNWSFRQFVEKSVVKAGVE 283 >gi|254295961|ref|ZP_04963418.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 406e] gi|157805850|gb|EDO83020.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 406e] Length = 437 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 69 VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRL 333 >gi|310815390|ref|YP_003963354.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare Y25] gi|308754125|gb|ADO42054.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare Y25] Length = 314 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 9/302 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +I+ AM+S+ F A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 15 FIILCAAMMSHAFAAPYAA--------LVMDARTGQVLDSENADTRLHPASLTKMMTLYI 66 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L + +T+S NA+ PPS + G + L ++ +KSAND A AI Sbjct: 67 AFQAIERGEVSLNSQVTVSANAAAQPPSRLGLRAGQRIELQYLIRAAAIKSANDAATAIG 126 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 + +E+ F MN T++ +G++ THF++ +G+ +GHY+TARDM IL + DFPQY Sbjct: 127 VGISGSEEAFAARMNATARAMGMNNTHFISMNGLTTNGHYSTARDMTILGRHLIYDFPQY 186 Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + TN + + GADG+KTG+T A+G+N+ ASA +G+ +IA + Sbjct: 187 YNLFSRRSADAGIATVRTTNSRLLDNYQGADGIKTGYTQAAGYNLTASAERGNVRIIATV 246 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 GA R+ L+ GF N ++ + C + Sbjct: 247 FGATSNADRHTRITRLMDRGFANAPRNARLRPPEAPPAFLTPQQQHSPPPLRACLKHRPR 306 Query: 304 IN 305 Sbjct: 307 AR 308 >gi|319796225|ref|YP_004157865.1| beta-lactamase [Variovorax paradoxus EPS] gi|315598688|gb|ADU39754.1| Beta-lactamase [Variovorax paradoxus EPS] Length = 389 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 9/283 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R ++ A ++ + Y LLD ++A+ D P PASLTKLM Sbjct: 8 LRALVLTAAASVGVIAAAQVPAPPEVAARSYLLLDVTANQILAQKDIDSPVEPASLTKLM 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 +AY+VF L+ KK LT +S A + P S + +++ +K LIV+S ND Sbjct: 68 SAYIVFDALRAKKITLTQTFPVSPRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDAT 127 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + T + FV+ MN +K LG+ T + N G+ GH TTARD++IL+ R+ D Sbjct: 128 VALAEGVGGTVEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRD 187 Query: 181 FPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235 FP+ Y+ IK G N N + DG+KTG T A+G+ ++A+A + Sbjct: 188 FPEEAKYYAIKKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAKRDFP 247 Query: 236 ----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + L++++LGA R S LL+ G+ + + Sbjct: 248 NLTGGRRLLSIVLGASSETVRANESQKLLNWGYTAYDAVRLFD 290 >gi|188591036|ref|YP_001795636.1| d-alanyl-d-alanine carboxypeptidase; penicillin-binding protein 6a [Cupriavidus taiwanensis LMG 19424] gi|170937930|emb|CAP62914.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Cupriavidus taiwanensis LMG 19424] Length = 399 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 88/300 (29%), Positives = 141/300 (47%), Gaps = 17/300 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L D +G +A D PASLTKLMTAY+ F LKEK+ L + + Sbjct: 39 PQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98 Query: 84 KNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + S + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN Sbjct: 99 NLVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + P Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYSMYSQKEFTYNKIRQP 218 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254 N N + DG+KTG T ++G+ +++SA + G + LI++++G R + Sbjct: 219 NRNRLLYIDSTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQ 278 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 S +L+ GF + Y + P+I + T K + T + K Sbjct: 279 ESLKILNYGFQFFDTLR--------LYDKGQVLATPDIYKGKSGTVKIGVQNETFVTVPK 330 >gi|238762884|ref|ZP_04623852.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] gi|238698895|gb|EEP91644.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii ATCC 33638] Length = 403 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|54302470|ref|YP_132463.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] gi|46915892|emb|CAG22663.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum SS9] Length = 394 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 147/340 (43%), Gaps = 14/340 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 ++ + M S F + + L+ +G VIA + P PASL Sbjct: 7 LKHLSLFTLFTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASL 66 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TK+MT+YVV + + IS+NA S G +T+D K +I+ Sbjct: 67 TKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVII 126 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND VA+AE + + F++ MN ++ +G+ T+F N HG+ +TTA D+AIL Sbjct: 127 SSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDIAIL 186 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + D P+ F+ K K N N + T L DG+KTG T +G+++V+SA Sbjct: 187 TRALIKDLPEMYGLFKEKSFTFHDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSSA 246 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 Q Q IAV++G R S LL+ GF D + + + Sbjct: 247 EQSGQRFIAVVMGTKSTGIRRSESKKLLTWGFRFYQDLTPTFDGKELEPIKVWYGSPSKV 306 Query: 293 SEE------VCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S E + +++ N ++ + E+ E++ Sbjct: 307 SVELGDGGVITVPRRQRKNLEHKVFYNSNLEAPISKGEQV 346 >gi|125975657|ref|YP_001039567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|125715882|gb|ABN54374.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] Length = 418 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 17/324 (5%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + ++D +TG V+ E AS TK+MTA V L + + Sbjct: 56 PPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKV 110 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+ + Sbjct: 111 SSRAASIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKA 170 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL T F HG+ GHY+TA ++A+L+ P + K I + Sbjct: 171 RELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQ-NPVFAQIVATKSTTITNRSLYT 229 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L Sbjct: 230 TNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKAILDY 289 Query: 263 GFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE-----VCTTQKEIINYN-TQMKEA 313 F N + + + + + + VP ++ E + +KE + T + Sbjct: 290 AFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLDETI 349 Query: 314 KDKESHFIDFEKIT--LLKNKITK 335 K ++ KI + I + Sbjct: 350 KAPVYKGVEVGKIEFFVDGKLIGR 373 >gi|261212007|ref|ZP_05926293.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] gi|260838615|gb|EEX65266.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341] Length = 347 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90 +D ++G V+AE + +PASLTK+MT+YV+ +K L + ISKNA Sbjct: 1 MDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEIKRGNISLNDDVVISKNAWAKNFPD 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+T+ + + + +I++S ND VA+AE + +E FV MN + +LG+ + Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-T 209 HF NAHG+ Y+T D+A+L + D P + + G N N + Sbjct: 121 HFTNAHGLDNPNLYSTPYDLALLGQALIRDVPDEYAIYSEQKFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DG+KTG T +G+N+V+SA +G+ L+AV++G N R S LL GF Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDSENARKAESKKLLGYGFRFFET 240 >gi|90411493|ref|ZP_01219504.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90327706|gb|EAS44049.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 400 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 18/315 (5%) Query: 1 MRQFL-----------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49 M++F ++IA +L+ + P Y L+D +G +IAEN P Sbjct: 1 MKRFFGRIVLGAFSVHMLIATKVLAVVIP---EPPALNAKGYVLMDFQSGSIIAENNPRD 57 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDN 106 PASLTKLMTAYVV + K+ +T+ +NA S K G ++++N Sbjct: 58 ALAPASLTKLMTAYVVGQEINTKRLKWDDMVTVGENAWSLKFPDSSKMFIKPGDEISVEN 117 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 ++ +I++S ND +VA+AE + +E FV MN +K L L T F+NAHG+ G T+ Sbjct: 118 LMRGVIIQSGNDASVALAEYIAGSESGFVNLMNGWAKTLKLQDTRFINAHGLDGEGIQTS 177 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 DMA L I D P +Q K N N + L DG KTG+T +G Sbjct: 178 PADMATLMRHIIRDVPDVYALYQDKQFAWNDITQFNRNKLLWDKALNVDGGKTGYTEQAG 237 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +++V+SA +G + LIAV++G + R + S +LLS GF +K + F + Sbjct: 238 YSLVSSATEGSRRLIAVVMGTPSQTIRAEASKNLLSYGFRFYDTQKVVQANESVFSYEIW 297 Query: 286 SNEVPNISEEVCTTQ 300 ++ V + Sbjct: 298 KGATDKVTLGVTDDK 312 >gi|261868788|ref|YP_003256710.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391084|ref|ZP_06635418.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414120|gb|ACX83491.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951618|gb|EFE01737.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 396 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 91/275 (33%), Positives = 134/275 (48%), Gaps = 5/275 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L + AM + F Y L+D N+G V+A PD PASLTK+MT+YV Sbjct: 18 LAVSLGAMAAEDVQFNIAVPEINAQTYVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 V +K+ K T +TI +++ + S +++ + + +I+ S ND V Sbjct: 78 VGQAIKQGKIRNTDMVTIGESSWGHKFPGSSKMFLNLNQQVSVADLHRGIIIVSGNDACV 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + T FV MN + GL T+F HG+ + Y++ARDMAI+ RI D Sbjct: 138 AMAEHVSGTVMNFVDTMNKYVEQFGLKNTYFTTVHGLDEDNQYSSARDMAIIGARIIRDL 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSL 239 P+ + K K PN N + + DGMKTG T +G+N+VASAI + L Sbjct: 198 PEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTDKAGYNLVASAISPNNMRL 257 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 I+V++G R S LL GF N K ++ Sbjct: 258 ISVVMGVPTYKGREVESKKLLQWGFANFETFKTLD 292 >gi|89902561|ref|YP_525032.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens T118] gi|89347298|gb|ABD71501.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Rhodoferax ferrireducens T118] Length = 394 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 150/294 (51%), Gaps = 20/294 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ L+ +A AM ++ Y L D +AE D P ASLTKLM Sbjct: 2 MKKLLLTLAAAMCLSVSAQTPQPPEIAARSYLLFDITANQFLAEKDIDSPVEQASLTKLM 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAY+VF L+ KK L + +S++A + P S + +++ LK +IV+S ND Sbjct: 62 TAYIVFDALRSKKIDLKQMLPVSEHAWKMPGSRMFIDPKMKVPVEDLLKGMIVQSGNDAT 121 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+AE + T ++FVQ MN +K LG+ +T++ N G+ + GH TTARD++IL+ R+ D Sbjct: 122 MALAEGVGGTVERFVQLMNEQAKALGMKSTNYKNPEGLTEAGHTTTARDLSILATRLMRD 181 Query: 181 FPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235 FP Y+ Y+ IK G N N + DG+KTG T A+G+ ++A+A + Sbjct: 182 FPDYVAYYAIKQYRYPGTPAANGSNRNLLLFRDPTVDGLKTGHTDAAGYCLIATAKRDFV 241 Query: 236 ---------------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + L++++LGA N+R S LL+ G+ K + Sbjct: 242 GLGAPAAAGSPGATGSRRLLSIVLGATSENSRANESQKLLNWGYTAFEPVKLFD 295 >gi|90412590|ref|ZP_01220592.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] gi|90326398|gb|EAS42810.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK] Length = 399 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 132/277 (47%), Gaps = 8/277 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 ++ + + M S F + + L+ +G VIA + P PASL Sbjct: 7 LKHLSLFTLVTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASL 66 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TK+MT+YVV + + IS+NA S G +T+D K +I+ Sbjct: 67 TKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVII 126 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND VA+AE + + F++ MN ++ +G+ T+F N HG+ +TTA DMAIL Sbjct: 127 SSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDMAIL 186 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + + + P+ F+ K + K N N + T L DG+KTG T +G+++V+SA Sbjct: 187 TRALIKELPEMYGLFKEKSFTFQDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSSA 246 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 Q Q IAV++G TR S LL+ GF D Sbjct: 247 EQSGQRFIAVVMGTKSTGTRRSESKKLLTWGFRFYQD 283 >gi|148255490|ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146407663|gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. BTAi1] Length = 384 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P L++ N+G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA Sbjct: 22 DAPTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTIKLNDEYRISENA 81 Query: 87 SEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140 S S +++ + L I++S ND +A+AE + EK F +M Sbjct: 82 WRRGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTK 141 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL+ + F N++G+ G+ T R++A+L+ I DFP++ F K + Sbjct: 142 RARELGLTKSTFANSNGLPDPGNKMTVRELAMLARHIILDFPEFYKIFGEKEFTWNKIRQ 201 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + GADG+KTGFT G+ +V SA+Q LI V+ G D R + +L Sbjct: 202 QNRNPLLNAMEGADGLKTGFTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 261 Query: 261 SMGFYNKTDR 270 GF N R Sbjct: 262 EWGFRNFETR 271 >gi|146310825|ref|YP_001175899.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter sp. 638] gi|145317701|gb|ABP59848.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Enterobacter sp. 638] Length = 403 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEMNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL +HF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + L DG+KTG T +G+N+VASA +G LI+ ++G R S Sbjct: 222 IRQTNRNGLLWDNSLKVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + K+F + + Sbjct: 282 KKLLTWGFRFFETVNPLKAG-KEFASEPV 309 >gi|293396914|ref|ZP_06641188.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] gi|291420385|gb|EFE93640.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM 4582] Length = 356 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 21/323 (6%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--- 90 +D N+G ++AE PD +PASLTK+M++YV+ +K K T +T+ K+A Sbjct: 1 MDYNSGKILAEGNPDSRLDPASLTKIMSSYVIGQAIKAGKIKPTDLVTVGKDAWATGNPV 60 Query: 91 ---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S K G + + K ++++S ND ++A+A+ + +++ FV MN +K+LGL Sbjct: 61 LRGSSLMFIKPGDRVPVMELNKGIVIQSGNDASIALADYVAGSQESFVSLMNGYAKHLGL 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 THF+ HG+ G ++TARDMA+LS + D P + K + N N + Sbjct: 121 QNTHFLTVHGLDAEGQFSTARDMALLSQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLL 180 Query: 208 G-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + L DG+KTG+T +G N+VASA G LI+V+LGA R S LL+ GF Sbjct: 181 WSSNLSVDGIKTGYTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRF 240 Query: 267 KTDRKKINYIIKDFYQQNL----SNEVPN-ISEEVCTTQ--------KEIINYNTQMKEA 313 I K F Q + EVP ++++ T K N+ +A Sbjct: 241 YETTTPI-KADKPFITQRVWFGDVGEVPLGVAKDASITIPKGQMKNLKASYKLNSDSLKA 299 Query: 314 KDKESHFIDFEKITLLKNKITKK 336 ++ + L I ++ Sbjct: 300 PLAKNQVVGTIDFQLDGKVIDQR 322 >gi|238758038|ref|ZP_04619219.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] gi|238703792|gb|EEP96328.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC 35236] Length = 403 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|281500691|pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From Haemophilus Influenzae Length = 344 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 128/269 (47%), Gaps = 6/269 (2%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +TI Sbjct: 4 PPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTI 63 Query: 83 SKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 ++A S + +++ + + +IV S ND VA+AE + FV+ MN Sbjct: 64 GESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMN 123 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + GL T+F HG+ Y++ARDMAI+ I D P+ + K K Sbjct: 124 KYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIK 183 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSA 257 PN N + + DGMKTG T +G+N+VASA + LI+V++G R S Sbjct: 184 QPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESK 243 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 LL GF N K + K+ +Q + Sbjct: 244 KLLQWGFANFETFKTLEAG-KEISEQRVY 271 >gi|332160854|ref|YP_004297431.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604756|emb|CBY26254.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665084|gb|ADZ41728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863383|emb|CBX73505.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia enterocolitica W22703] Length = 403 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|167568588|ref|ZP_02361462.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis C6786] Length = 378 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D + V+A D PASLTKLMTAY+VF L KK Sbjct: 7 ATYAPGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 66 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T S+ S + +++ + + +I++S ND A+A+AE + +E Sbjct: 67 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 126 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y F +K Sbjct: 127 AQFVNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVK 186 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 187 DFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMM 246 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +L+ G+ + Sbjct: 247 GETKESDRVQDSMKMLNYGYTAFDSVRL 274 >gi|312144315|ref|YP_003995761.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp. 'sapolanicus'] gi|311904966|gb|ADQ15407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp. 'sapolanicus'] Length = 375 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 11/335 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + I+ M+ ++ A + L++ TG V+ D PAS+TK+M Sbjct: 4 KHIVFILIFTMVFSLAGTYVSAFDVDMESAILMEAETGQVLFSKNADRKLPPASMTKIMP 63 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + L+E L +TIS+ A+ S + + L+ LK + + S ND +V Sbjct: 64 LLIAMEKLEEGAISLDDKVTISRYAASMGGSQIFLAANTQVELEKLLKAVTIASGNDASV 123 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E + T F+ MN ++ LG+ T+F N+ G+ +Y+TARD+AI+S + + Sbjct: 124 AIGEYIAGTYSNFIAMMNRRAEELGMENTNFSNSTGLPDPDNYSTARDIAIMSRELAK-Y 182 Query: 182 PQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P + + I I + NTN + + DG+KTG T +GF + A+A +GD Sbjct: 183 PLVLQWGSIWTENIQLPGREAMLVNTNRLINVYPSMDGLKTGHTREAGFCLSATAQKGDT 242 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI--IKDFYQQNLSNEVPNISEE 295 LI+V++ R + LL GF + R+ I++ +N+V E Sbjct: 243 RLISVVMQGDTLEQREDTTIRLLDYGFNAFSKREVATEGDQIQNIPVSQSANQVAAGEIE 302 Query: 296 ----VCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 V + + +++ ++ E+ + ++I Sbjct: 303 ESFYVMVQKGSERDITQEIEIEENLEAPLLKGDRI 337 >gi|256752163|ref|ZP_05493029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] gi|256748977|gb|EEU62015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus CCSD1] Length = 421 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + + + + + P L+D TG V+ + PAS Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L ++++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG+T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYI-- 276 G + ASA + + LI+VI+G N + LL GF N + KK I YI Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDL 293 Query: 277 ------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + +++ EVP E TQ I N +K +K + + K TL Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKDIKTPINK-GDVLGYIKYTLDG 349 Query: 331 NKIT 334 N+I Sbjct: 350 NEIG 353 >gi|123443220|ref|YP_001007194.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090181|emb|CAL13044.1| putative penicillin-binding protein 5 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 403 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|167037830|ref|YP_001665408.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914766|ref|ZP_07132082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307724000|ref|YP_003903751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|320116247|ref|YP_004186406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856664|gb|ABY95072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889701|gb|EFK84847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X561] gi|307581061|gb|ADN54460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X513] gi|319929338|gb|ADV80023.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 421 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + + + + + P L+D TG V+ + PAS Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L ++++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG+T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYI-- 276 G + ASA + + LI+VI+G N + LL GF N + KK I YI Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDL 293 Query: 277 ------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + +++ EVP E TQ I N +K +K + + K TL Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKDIKTPINK-GDVLGYIKYTLDG 349 Query: 331 NKIT 334 N+I Sbjct: 350 NEIG 353 >gi|283850365|ref|ZP_06367654.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] gi|283574391|gb|EFC22362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] Length = 365 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 138/267 (51%), Gaps = 3/267 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+ + ++ + L S ++ KLP + + +G V+ PD PAS+TK Sbjct: 1 MRRVIFLLMILCLVGPKTAFSARQSGKLPVKAAMVAEYGSGRVLFTQDPDKRIAPASVTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y+VF L +A L+ + +S+ A S + G +TLD ++ + V S ND Sbjct: 61 VMTMYLVFDALAAGRASLSDKVKVSRRADATGGSTMNLRAGEVVTLDELMRGMAVASGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AVAIAE +V MN ++ LG+++T F +G+ G TTARD+ L+ Sbjct: 121 AAVAIAEHF-GGVPHWVGMMNEKARELGMTSTTFKTPNGLPAPGQLTTARDLMKLATSYL 179 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +PQ + Y + G + NTN +G G DG+KTG+ +SG+NI+A+A +GD Sbjct: 180 RRYPQALRYHSTTEINHCGAVHGNTNRLLGVCEGVDGIKTGYVGSSGYNIIATAKRGDTR 239 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265 +IAV+LG + RN + +L F Sbjct: 240 IIAVVLGGRTKQARNNATTRILDASFS 266 >gi|260549716|ref|ZP_05823933.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624] gi|260407233|gb|EEX00709.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624] Length = 382 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 139/286 (48%), Gaps = 8/286 (2%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEKVRMNESAWCKGSSAESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T FMN+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHLMNQEAKRIGMTNTQFMNSTGLPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIK 278 G LI+VI G N R + +LLS GF N + + N ++ Sbjct: 241 GPMRLISVIFGTDSVNERANQTRALLSWGFANFETANVQPANQVLA 286 >gi|291550443|emb|CBL26705.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14] Length = 390 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 24/358 (6%) Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ +I + + FP + P L++ +TG V+ E D PA Sbjct: 6 MKKGFTVILLGVFLLYRIAFPTTVVHAEEVEISAPSGILMEMSTGTVLFEKDADTARPPA 65 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT ++F L+ L ++ S+ A+ S + G T+ LK + V Sbjct: 66 SVTKIMTMLLIFDALENGTISLDDEVSTSEYAASMGGSQVFLEPGEMQTVGTLLKCISVA 125 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND V ++E +C E++FV+ MN +K LG+ T+F+N +G+ GH +ARD+A++S Sbjct: 126 SANDACVTMSECICGNEQEFVKQMNERAKGLGMKHTNFVNCNGLDADGHEMSARDIALMS 185 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGF 226 + T +PQ Y + I NTN + + A G+KTG T + F Sbjct: 186 RELMTRYPQIKDYCTVWMENITHTTARGSSEFGLTNTNKLIRQYEYATGLKTGSTGKAKF 245 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-----YNKTDRKKINYIIKDFY 281 + A+A + LIAVI+GA D +R K + +LL+ GF YN ++K ++K Sbjct: 246 CVSATASKNGVDLIAVIMGAEDSKSRFKDAVTLLNYGFGKCQIYNAKEQKLPEVLVKGGK 305 Query: 282 QQNLSNEVPNI-----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 + +L + +E ++ E + +A K+ + + +I Sbjct: 306 EDHLKIQYEEGFTYVDTEGSDLSKVEEVTEIPDEVKAPVKKGDTVGRICYRISGKEIG 363 >gi|195970177|ref|NP_385517.2| hypothetical protein SMc00996 [Sinorhizobium meliloti 1021] gi|307309177|ref|ZP_07588848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|187904171|emb|CAC45990.2| Penicillin-binding protein [Sinorhizobium meliloti 1021] gi|306900323|gb|EFN30939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 500 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 148/286 (51%), Gaps = 3/286 (1%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVP 290 R+ L++ + + R N I + + EVP Sbjct: 271 SGGARDAQMRKLVAKYMPSASRRGSGNLIAEVPAEPVTTVAEAEVP 316 >gi|91223153|ref|ZP_01258419.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] gi|91191966|gb|EAS78229.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01] Length = 385 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 9/281 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEYNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMARL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G LI+V++G + R S +LLS GF D K++ Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFR-FYDTKQV 280 >gi|313901752|ref|ZP_07835179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467988|gb|EFR63475.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 405 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 15/322 (4%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L+D TG + D P PASL K+MT +VF L++ + L + +S+ Sbjct: 44 EIQARSALLVDATTGQELFAQKADEPIPPASLAKIMTLDLVFHALEQGQITLDQEVPVSE 103 Query: 85 NASEY-------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 A PS + G + +++ ++ + + S ND + +AE++ +E+ FVQ Sbjct: 104 AAWRLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAIASGNDASTVLAEAVAGSEEAFVQR 163 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN + LG+ + F N+HG+ + TARDMA L+ + + P + Y +K E K Sbjct: 164 MNQHAAELGMKDSVFSNSHGLPGGEQHVTARDMARLALHVLKEHPGILKYTSMKYFEWKD 223 Query: 198 K-KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 PN N + DG+KTG +G+++VA+A +GD+ L++V++GA R S Sbjct: 224 FAAQPNYNRLLFRDPRVDGLKTGHLSEAGYHLVATAREGDRRLVSVVMGAASDALRVGES 283 Query: 257 ASLLSMGFYNKTDRKKI-----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 LL GF T+ + ++ F V + V T K Sbjct: 284 QRLLDYGFQQFTNTRVAFGENGRQVVPVFKGAQPQVTVQPAEDPVVTVPK--TAAGEVRS 341 Query: 312 EAKDKESHFIDFEKITLLKNKI 333 + KE E+ + Sbjct: 342 RVELKEPLVAPLERGQRVGTLT 363 >gi|167561357|ref|ZP_02354273.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia oklahomensis EO147] Length = 381 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D + V+A D PASLTKLMTAY+VF L KK + Sbjct: 13 APGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 72 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 73 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 132 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y F +K Sbjct: 133 VNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFT 192 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILGAL 247 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G Sbjct: 193 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGET 252 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 253 KESDRVQDSMKMLNYGYTAFDSVRL 277 >gi|255262711|ref|ZP_05342053.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium sp. R2A62] gi|255105046|gb|EET47720.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium sp. R2A62] Length = 465 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 102/295 (34%), Positives = 154/295 (52%), Gaps = 5/295 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M+ +I ++ A ++D TG V+ D +PASLTK+MT Y+ F ++ Sbjct: 1 MILSIPVRVAAAPY----AAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVER 56 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + L T ITI + A+ PPS + G + L ++ VKSAND A AI ++ +E Sbjct: 57 GELSLDTMITIPRVAANEPPSKLGLRAGQKIRLRYLIRGAAVKSANDAATAIGVAISGSE 116 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F + M T++ +G+S T F NAHG+ ++GH +TARDM L + D+PQY + F + Sbjct: 117 AAFARRMTRTAEAMGMSRTTFKNAHGLTENGHMSTARDMTNLGRHMIYDYPQYYNLFSRR 176 Query: 192 GLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + ++ NTN +G + GADG+KTG+T A+GFN+VASA +G + +IA + G Sbjct: 177 SADAGVREVANTNRRLLGNYRGADGIKTGYTRAAGFNLVASAERGQERVIATVFGGRSSA 236 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 TRN A LL MGF R + Y N + E T ++I Sbjct: 237 TRNDRVAELLDMGFARAPARAALRRPSLPRYTGNGGSAPSPTQEYAPGTAGKVIR 291 >gi|296116334|ref|ZP_06834950.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] gi|295977153|gb|EFG83915.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii ATCC 23769] Length = 435 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 1/250 (0%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + ++D TG V+ E D P+SLTK+MTAYVVF L+ + L +T+S+ Sbjct: 86 DTPARWACIIDYTTGAVLLEKAADERMPPSSLTKMMTAYVVFGMLRAGRLKLDQTLTVSE 145 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S + + + ++ ++++S ND + +AE + +E +FV MN + Sbjct: 146 KAWRMQGSKMFVPLQGAVAVSDLIQGMVIQSGNDACIVLAEGVAGSEDQFVSLMNAQAVQ 205 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG++ THFMNA G GHY +ARD+ ++ + DFP+Y H+F KG N N Sbjct: 206 LGMTNTHFMNATGWPADGHYMSARDVTTIAMHLIHDFPEYYHFFAEKGFRYNRISQENRN 265 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 V + ADG+KTG T A GF + AS+ + ++ I G N R LL GF Sbjct: 266 ALVVKGI-ADGLKTGHTDAGGFGLCASSERNGNRIVMAINGLPSSNARAFEGERLLEWGF 324 Query: 265 YNKTDRKKIN 274 N + ++ Sbjct: 325 VNFENATLVH 334 >gi|317491387|ref|ZP_07949823.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920934|gb|EFV42257.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 402 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 11/284 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + +++ + A Y L+D ++G ++ E D +PASL Sbjct: 10 IKKITLGAGLTLMAIPMTYADEAAPAAPQINAKAYVLMDYDSGKILTEANADERLDPASL 69 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKL 110 TK+M +YV+ +K K + + K+A S K G + + K Sbjct: 70 TKIMASYVIGQSIKAGKITPNDMVVVGKDAWATGNPILRGSSLMFLKPGDRVPVSELNKG 129 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 ++++S ND ++A+A+ + ++ FV MN + GL T F HG+ G Y++ARDM Sbjct: 130 VVIQSGNDASIALADYVAGSQDAFVSLMNKYVEAWGLKNTSFKTVHGLDSEGQYSSARDM 189 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 A++S R+ D P + K + N N + + L DG+KTG+T +G N+V Sbjct: 190 ALISQRLIADVPDEYALHKEKEFTFNKIRQVNRNRLLWDSSLNVDGIKTGYTSGAGHNLV 249 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +SA G LI+V+LGA R + S LL+ GF I Sbjct: 250 SSATDGPMRLISVVLGAPTDRIRFEESKKLLTWGFRFYETVTPI 293 >gi|260574206|ref|ZP_05842211.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] gi|259023672|gb|EEW26963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] Length = 548 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 3/284 (1%) Query: 10 MAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + S + ++ PY ++D TG I D +PASLTK++T Y+ F Sbjct: 12 LLLTSFVLVCAFVSPAGAAPYAAIVIDARTGETIYAKNADTRLHPASLTKMLTLYITFGA 71 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 ++ + L T +T+SK+A+ PPS + G + L ++ +KSAND A AI E++ Sbjct: 72 IERGEISLDTMVTVSKHAASEPPSRLGLRAGQKIALRYLIRAAAIKSANDAATAIGEAVG 131 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E KF + MN T+K LG+ + F NA+G+ GH +TARDM L + DFPQY + F Sbjct: 132 GSEAKFAERMNRTAKALGMRNSTFRNANGLTTPGHMSTARDMTTLGRHLFYDFPQYYNIF 191 Query: 189 QIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + + NTN + + GADG+KTG+T +GFN+ ASA +G++ +IA I G Sbjct: 192 SRRSSDAGVAEVANTNRRFLDMYEGADGIKTGYTAPAGFNLTASAQRGNKRIIATIFGGT 251 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 RN A LL +GF + + YQ + E P+ Sbjct: 252 STAMRNAKMAELLDLGFASAPANAAVQAPAAPGYQADP-AEAPD 294 >gi|269965808|ref|ZP_06179903.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] gi|269829543|gb|EEZ83782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B] Length = 385 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 10/286 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ L + P ++ + Y L+D +G +IAE+ PASL Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIV 113 TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+ Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 I +D P + K + N N + + DG KTG+T +G+++V+SA Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNKTDRKKINYI 276 +G LI+V++G + R S +LLS G FYN K + Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYNTKQVAKKGEV 286 >gi|330818433|ref|YP_004362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] gi|327370826|gb|AEA62182.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] Length = 434 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 135/265 (50%), Gaps = 9/265 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D ++ V+A D PASLTKLMTAY+VF L KK + Sbjct: 67 MPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALSTKKISM 126 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S+ S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 127 EQIVTPSEAVRRVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSESQF 186 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG+S THF + +G+ HYTTA D+A LS R+ DFP Y + F +K Sbjct: 187 VNMMNAEAQKLGMSGTHFADVNGMPDPQHYTTAGDLAKLSARLIRDFPDYYNIFSVKEFS 246 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 + PN N + DG+KTG T A+G+ ++ASA + G + L++V++G Sbjct: 247 YNNIRQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRALPGADGGTRRLVSVMMGET 306 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 + R + S +L+ G+ + Sbjct: 307 KESDRVQDSMKMLNYGYSAFDAVRL 331 >gi|256253946|ref|ZP_05459482.1| cobalamin synthesis protein P47K [Brucella ceti B1/94] Length = 630 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 116/303 (38%), Positives = 182/303 (60%), Gaps = 11/303 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR + +A + ++ LS A N +D TG V + W PASLTK+M Sbjct: 1 MRIWFAAVAFSGIA-----LSGAAANPS---IAVDVATGKVYEQQDAFQRWYPASLTKMM 52 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 53 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 112 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 113 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 172 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 173 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 232 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 233 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 291 Query: 299 TQK 301 Q Sbjct: 292 EQA 294 >gi|167766358|ref|ZP_02438411.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1] gi|167711949|gb|EDS22528.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1] Length = 399 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 24/299 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 + L++ A+ + S P ++ +++ + ++ D Sbjct: 5 KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G + +K + Sbjct: 65 APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A D+A Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCA 223 +++ + +P+ Y +I I K NTN + + G GMKTG T Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYI 276 +GF + A+A + +IAV++G R K + +LL GF N +T RK+I I Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKEIGRI 303 >gi|289578326|ref|YP_003476953.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|289528039|gb|ADD02391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] Length = 382 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 31/355 (8%) Query: 1 MRQFL--VIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++F+ + I + +S++ + S + ++D TG V+ E AS T Sbjct: 1 MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT V K L +T+SK A+ S+ G + +++ L L++ S N Sbjct: 61 KIMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSW 175 D A AIAE + + + F + MN +K +G THF+ G+ HYTTA D+A+++ Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFVTPSGLDIGIDDHYTTAYDLALITR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +P++ K I + N N + + GADG+KTGFT +G +V Sbjct: 176 YAFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLS 286 +SA + + IAV+L + + S +L F + + I K + Sbjct: 235 SSATREGRRFIAVVLNSPPM---WEDSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291 Query: 287 NEVPNISEEVC-----TTQKEIINYN---TQMKEAKDKESHFIDFEKITLLKNKI 333 N + +SE C +K+ ++ + EA ++ I + + + + KI Sbjct: 292 NSISVVSEIECIIPASEEEKQKVSLEFHLPESVEAPIEKGERIGYVTVKIGEEKI 346 >gi|148825690|ref|YP_001290443.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE] gi|148715850|gb|ABQ98060.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE] Length = 367 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 137/322 (42%), Gaps = 5/322 (1%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T Sbjct: 3 FGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTD 62 Query: 79 PITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 +TI ++A S + +++ + + +IV S ND VA+AE + FV Sbjct: 63 MVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFV 122 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 + MN + GL T+F HG+ Y++ARDMAI+ I D P+ + K Sbjct: 123 ETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTF 182 Query: 196 KGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRN 253 K N N + + DGMKTG T +G+N+VASA + LI+V++G R Sbjct: 183 NKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGRE 242 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 S LL GF N K + + Q+ + ++ I Q + Sbjct: 243 VESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALMDHFITIPKGKQSEVK 302 Query: 314 KDKESHFIDFEKITLLKNKITK 335 E + + I K Sbjct: 303 ARYELADKNLQAPLAKGQVIGK 324 >gi|294671129|ref|ZP_06735984.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307237|gb|EFE48480.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 430 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 132/255 (51%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P S A Y + D +G ++ D PASLTKLMTAY+ F L+E + Sbjct: 68 VPQASTAPEIAAAAYLVQDLQSGQILTGKNLDKQIEPASLTKLMTAYLAFKALEEGRLKA 127 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T +T S+ A S G + + + LK LIV+S ND AV +AE+L +E F Sbjct: 128 ETMLTPSETAWRAEGSRMFLNAGKPVAVGDLLKGLIVQSGNDAAVTLAEALGGSEVGFAD 187 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN +K LG+S THF+NA G+ GH +T RD+AILS I D+P+Y + ++ + Sbjct: 188 MMNAEAKRLGMSKTHFVNATGLPSDGHMSTVRDLAILSAAIIKDYPKYYPIYSMQSFKYN 247 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + PN N + DG+KTG T +G+N++AS+ + + +++V++G R S Sbjct: 248 NIEQPNRNLLLYRDPNVDGLKTGHTNTAGYNLIASSKRNGRRVVSVVVGTESIEARAGES 307 Query: 257 ASLLSMGFYNKTDRK 271 + LL+ K Sbjct: 308 SKLLNWALQAFDTPK 322 >gi|93005488|ref|YP_579925.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter cryohalolentis K5] gi|92393166|gb|ABE74441.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychrobacter cryohalolentis K5] Length = 388 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 156/343 (45%), Gaps = 18/343 (5%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 Q +V ++++M + + Y L+D NTG ++A+ + PASLTK+MT+ Sbjct: 12 QLVVGVSISMGAVMASAAIQPPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTS 71 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDI 119 Y++ L T + +S +A S+ + ++ + L+ +I++S ND Sbjct: 72 YIIEQRLASGDLKETDQVLMSPSAWCRGSSSQSCMYVPVNKSASVIDMLRGIIIQSGNDA 131 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 + A+AE + +E F MN ++ +G+ THF+N+ G+ GH +A D+A LS I Sbjct: 132 SKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPDEGHQASALDLAKLSRAIIK 191 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + Y + K G N N + T DG+KTG T A+G+ + AS+ + L Sbjct: 192 NSGDYYSIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRL 251 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI---SEEV 296 I+VI+G + R S LL+ GF + T + ++VP ++E+ Sbjct: 252 ISVIMGTESQQARADQSRELLNWGFGHFTT-------VTQAPAGQFVSKVPVWFGEAKEI 304 Query: 297 CTTQKEIINYNTQMKEAKDKESHFID----FEKITLLKNKITK 335 + + T K K+K + +D E +I K Sbjct: 305 EVATGDNLQILT-TKTQKNKITTVVDIPESLEAPIKKGQEIGK 346 >gi|225872450|ref|YP_002753905.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium capsulatum ATCC 51196] gi|225792978|gb|ACO33068.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium capsulatum ATCC 51196] Length = 414 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 144/261 (55%), Gaps = 5/261 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +++A+ L+ P ++ + L+D +G V+ + D +PASLTKLMT Y+ Sbjct: 26 LLMALTALAMARPAQAVVHAS-----LLMDARSGKVLYAYHADERTHPASLTKLMTLYLT 80 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L++ + L + IS +A+ PS G T+++ + + +I SAND AV +AE Sbjct: 81 FQRLQDGRMRLDERLHISAHAAGQQPSKMWLHAGGTVSVRSCILGIISHSANDAAVTLAE 140 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + TE +F + MN ++ LG++ T F NA G+ +TTA DMA L+ + FPQY Sbjct: 141 GMAGTEWRFTRLMNEQARRLGMTHTIFYNASGLPDGRQWTTAYDMAKLARALIYTFPQYY 200 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 H+F + +G+ + + + G DGMKTG+ +SGFNIV SA++ +I V+LG Sbjct: 201 HFFSVHAFRYQGRMLYSFDRLPQEYTGVDGMKTGYINSSGFNIVTSAVRNHHRVIGVVLG 260 Query: 246 ALDRNTRNKVSASLLSMGFYN 266 ++R+ +LL+ GF + Sbjct: 261 GATAHSRDLQMIALLNRGFRS 281 >gi|262173532|ref|ZP_06041209.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] gi|261890890|gb|EEY36877.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] Length = 378 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 128/271 (47%), Gaps = 6/271 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +A E +L Y L+D +TG ++ E NPASLTKLMTA Sbjct: 1 MACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPASLTKLMTA 60 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 YV +K + IS NA S + GS + L + + LIV+S ND Sbjct: 61 YVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+L I Sbjct: 121 SVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNSNLYSTPYDIALLGQAIIR 180 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 D P+ + G N N + + DGMKTG+T +G+++ +SA G+ Sbjct: 181 DLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LI+V++G+ R S LLS GF Sbjct: 241 LISVVMGSKSVKIREAESKQLLSYGFRFFET 271 >gi|167835257|ref|ZP_02462140.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis MSMB43] Length = 374 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 9/268 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + P + L+D ++ V+A D PASLTKLMTAY+VF L KK Sbjct: 3 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 62 Query: 74 AMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + +T + S + +++ + + +I++S ND A+A+AE + +E Sbjct: 63 ITMEQIVTPGEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 122 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 +FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y + F +K Sbjct: 123 GQFVNMMNAQAQRLGMTNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 182 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVIL 244 K PN N + DG+KTG T A+G+ ++ASA + + L+ V++ Sbjct: 183 EFAYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMM 242 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKK 272 G + R + S +LS G+ + Sbjct: 243 GETKESDRVQDSMKMLSYGYTAFDSVRL 270 >gi|39935841|ref|NP_948117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39649695|emb|CAE28216.1| penicillin binding protein [Rhodopseudomonas palustris CGA009] Length = 413 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAET------------NKLPYYTLLDTNTGHVIAENYPDHPWN 52 L+ +A+ P + ++ + P L+D +G V+ E D Sbjct: 18 LLAGLIAVAVGAGPVTAANQSVQGAKKDDSGFEAQAPSAILVDAESGSVLFEKNADELRA 77 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNA 107 P+S+ KLMT VF LK LT +S+NA S + S +++DN Sbjct: 78 PSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWRNGGAPAGGSTMFAEIHSIISVDNL 137 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L I++S ND + +AE + +E FV+ M ++ +GL+ + F N+ G+ + + Sbjct: 138 LHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRARAIGLTQSTFANSTGLPNPDNKMSV 197 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 R++A L+ I +P+Y F K + N N + GADG KTG+T G+ Sbjct: 198 RELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNRNPLLNAMPGADGFKTGYTKEGGYG 257 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V SA+Q LI V+ G D + R + LL GF N R Sbjct: 258 MVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEWGFRNFESR 300 >gi|238791637|ref|ZP_04635275.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] gi|238729253|gb|EEQ20769.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC 29909] Length = 403 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K +T+ Sbjct: 42 PQIDSEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 K+A S K G + + + + ++S ND VA+A+ + ++ FV Sbjct: 102 KDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MNN K LGL T F HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|294650880|ref|ZP_06728227.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] gi|292823298|gb|EFF82154.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] Length = 397 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 3/260 (1%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 S LS Y L+D TG ++A D PAS+TK+MT++++ L + Sbjct: 31 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQG 90 Query: 73 KAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K + ++++A S T T+ L+ +IV+S ND + A+AE + Sbjct: 91 KLTEDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAG 150 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 E F MN +K LG++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y + Sbjct: 151 NEGTFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYS 210 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K G K N N + T DG+KTG T +GF + S+ +G LI+VI G Sbjct: 211 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSM 270 Query: 250 NTRNKVSASLLSMGFYNKTD 269 N R + +LL+ GF N Sbjct: 271 NERANQTRALLAWGFANFET 290 >gi|15612584|ref|NP_240887.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans C-125] gi|10172633|dbj|BAB03740.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans C-125] Length = 444 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 32/361 (8%) Query: 2 RQFLVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + F++++AMAM+ ++F + A + L+D +G ++ D AS+TK Sbjct: 7 KWFILVLAMAMVFSMFTPAMTANAAFELEAESAILVDAESGKILYGKNIDAVLPTASMTK 66 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y++ + E + + IS E SN ++ T T+ + + + Sbjct: 67 MMSEYLILEAINEGEISWDQEVPISDYVRELSLYVQLSNVPLRQDETYTVKELYESVAIY 126 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN +A+AE + +E FVQ MN + LGL F+N+ G+ Sbjct: 127 SANASTIALAELIAGSESAFVQRMNEKGEELGLEDFKFVNSSGLNNKDLLGNHPEGTDAN 186 Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAV------GT 209 + +AR A L++ + D+P+ + I + + N NW + Sbjct: 187 AENVMSARATAKLAYNLLKDYPEVLETASIPEKTFRAGEGEEIEMENWNWMLKGIRPQHD 246 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + G DG+KTG+T +G +A + LI+V++ R+ R K +A LL GF N T Sbjct: 247 YEGIDGLKTGYTAEAGNCFTGTAERNGMRLISVVMRTETRDDRFKETAKLLDYGFNNFTH 306 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 + + + Q L E +T + + +E ID + Sbjct: 307 TEVLPAGFQPAEAQTLPVSSGKEREVSISTSEPLHAVVRNGEEELYDPVVTIDESSLDED 366 Query: 330 K 330 Sbjct: 367 G 367 >gi|307321507|ref|ZP_07600902.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306892814|gb|EFN23605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] Length = 500 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 94/271 (34%), Positives = 144/271 (53%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 R+ L++ + + R N I + Sbjct: 271 SGGARDAQMRKLVAKYMPSASRRGSGNLIAE 301 >gi|325519264|gb|EGC98711.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. TJI49] Length = 354 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 8/250 (3%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 + L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+ Sbjct: 1 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 60 Query: 91 --PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+ Sbjct: 61 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF + +G+ HYTTA D+A LS + DFPQY F K + + N N + Sbjct: 121 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSM 262 DG+KTG T A+G+ ++AS+ + G + L++V++G + R + S +L+ Sbjct: 181 LDPTVDGLKTGHTQAAGYCLIASSKRAIPGSDGQRRLVSVMMGEQKESDRTQDSMKMLNY 240 Query: 263 GFYNKTDRKK 272 G+ + Sbjct: 241 GYSAFDAVRL 250 >gi|83590342|ref|YP_430351.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83573256|gb|ABC19808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 412 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 13/273 (4%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D TG ++ E + PAS+TKLMT V + +A L P+ +S+ A Sbjct: 60 AKGAILMDPQTGEILWEKNSHAHYYPASMTKLMTMVVAMDMVANGQATLDEPVQVSERAE 119 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S G T L+ L + V SAND AVA+AE L +E+ FV MN +K LGL Sbjct: 120 SFGGSEVFLAVGETFPLEQMLIAIAVASANDAAVAVAEHLAGSEEAFVAMMNAKAKELGL 179 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTN 204 THF N HG+ +YT+A DMA+++ +P+ + IK ++ TN Sbjct: 180 KDTHFANCHGLHDEQNYTSAYDMAVIARYALK-YPKIREWTSIKRYTLRKDPLTILDTTN 238 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G DG KTGFT A+G N+V++ + L+AV++G S L + F Sbjct: 239 KMLYWYPGTDGFKTGFTDAAGLNLVSTVERDGLRLVAVVMGVETPQGHFTESMKLYNWAF 298 Query: 265 YNKTDRKKINYIIKDFY-QQNLSNEVPNISEEV 296 + K+FY + +P +V Sbjct: 299 KQ--------WAFKEFYGPGQVVASIPVGKGQV 323 >gi|254474184|ref|ZP_05087575.1| penicillin-binding protein [Pseudovibrio sp. JE062] gi|211956714|gb|EEA91923.1| penicillin-binding protein [Pseudovibrio sp. JE062] Length = 485 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 2/255 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 IIA+++ P S+AE N ++D TG V+ N + PAS TK+MT YV+F Sbjct: 22 IIAVSVAIATAP--SVAEANSKYAGIVVDAKTGKVLYANNANARRYPASTTKIMTLYVLF 79 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L+ + L T + +S+ A+ PP+ + G ++ + +A+ LI KSAND + IAE Sbjct: 80 EELEAGRVSLNTKMKVSRYAAGRPPTKLGLRVGGSLRVKDAIYALITKSANDASTVIAEH 139 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + +EK F + M T++ +G+ T F N HG+ TTA D+A+L I+ FP+Y Sbjct: 140 ISGSEKAFGRRMTQTARAIGMRNTTFRNPHGLPNSKQVTTAADLALLGRAIQDRFPKYYK 199 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 YF + G++ N N +G G DG+KTG+T ASGFN+V + + ++ ++AV+LG Sbjct: 200 YFNTRSYTYAGRRMGNHNKLLGRVRGVDGIKTGYTNASGFNLVTNVKRDNRQIVAVVLGG 259 Query: 247 LDRNTRNKVSASLLS 261 +R+ L++ Sbjct: 260 RTGKSRDAQMVKLIN 274 >gi|150390291|ref|YP_001320340.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149950153|gb|ABR48681.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 387 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 134/278 (48%), Gaps = 13/278 (4%) Query: 2 RQFL------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 ++FL +I+ + N L+ + L+D TG V+ E PAS Sbjct: 4 KKFLKLMSGCLILMTVLALNTTTLLAQPFELQSKAGILIDAATGEVLYEKNIHESLPPAS 63 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT + L + L + +S+ AS + + G T++ +K + ++S Sbjct: 64 VTKIMTMLLTMEALDTNRITLNDKVVVSERASSMGGTQLYLEPGEVKTVEELMKGIAIRS 123 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND VAI E + +E FVQ MN +K LG+ T F+N +G+ GH T+ D+A++S Sbjct: 124 ANDACVAIGEHISGSEDAFVQKMNERAKELGMKNTTFINTNGLPAEGHVTSVYDIALMSK 183 Query: 176 RIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + +P + + ++ NTN + T+ GA G+KTGFT A+ + Sbjct: 184 ELLK-YPDVQKWLTTWMDTVVVGKRESTQELVNTNRLIRTYKGATGLKTGFTQAALHCLS 242 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ASA +G+ + IAV+L A R +A LL GF N Sbjct: 243 ASATRGNNTFIAVVLAAPTSQVRFSEAAQLLDFGFANY 280 >gi|192291489|ref|YP_001992094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192285238|gb|ACF01619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 413 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAET------------NKLPYYTLLDTNTGHVIAENYPDHPWN 52 L+ +A+ P + ++ + P L+D +G V+ E D Sbjct: 18 LLAGLIAVAVGAGPVTAANQSVQGAKKDDSGFEAQAPSAILVDAESGSVLFEKNADELRA 77 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNA 107 P+S+ KLMT VF LK LT +S+NA S + S +++DN Sbjct: 78 PSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWRNGGAPAGGSTMFAEIHSIISVDNL 137 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L I++S ND + +AE + +E FV+ M ++ +GL+ + F N+ G+ + + Sbjct: 138 LHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRARAIGLTQSTFANSTGLPNPDNKMSV 197 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 R++A L+ I +P+Y F K + N N + GADG KTG+T G+ Sbjct: 198 RELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNRNPLLNAMPGADGFKTGYTKEGGYG 257 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V SA+Q LI V+ G D + R + LL GF N R Sbjct: 258 MVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEWGFRNFESR 300 >gi|330993785|ref|ZP_08317717.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp. SXCC-1] gi|329759053|gb|EGG75565.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp. SXCC-1] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 5/272 (1%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASL 56 +R F L + A L + A ++D TG V+++ PD PASL Sbjct: 6 LRTFSRLRVTATVGLCIGLGGMHAARAQYAGQVSSIVVDARTGAVLSQQDPDLRRYPASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TKLMT Y+ F ++ + L + +S +A+ PS + GS++T++ A+ L+ KSA Sbjct: 66 TKLMTLYLTFKAVRTGQVTLEQQMPVSVHAASMEPSKLGLRPGSSLTVEQAVLALVTKSA 125 Query: 117 NDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A A+ E L ++ F M + LG+ T F NA G+ T+ARD+A+L+ Sbjct: 126 NDAACALGEFLGGGDETRFAAMMTREAGRLGMYDTVFRNASGLPNPEQMTSARDLAVLAR 185 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + D+ +Y HYF + G G PN + +G + GADG+KTG+T +G N+V SA++ Sbjct: 186 HLIVDYGEYYHYFAVPGFYFHGHAVPNHDPMLGAYPGADGLKTGYTDEAGHNLVTSAVRD 245 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + LI V++GA + RN A LL F + Sbjct: 246 NVRLIGVVMGAKSNSRRNTTMAELLDASFQTE 277 >gi|116250789|ref|YP_766627.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhizobium leguminosarum bv. viciae 3841] gi|115255437|emb|CAK06513.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Rhizobium leguminosarum bv. viciae 3841] Length = 464 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 8/319 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ L + L+ P ++A L +LD TG V+A D +PASLTK+M Sbjct: 38 MRKLLAAVLTVTLAVSAPLAALAGNASL----ILDARTGKVLASENADTLNHPASLTKMM 93 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 94 TLYLTFEALKRGKITWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 153 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 154 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 213 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 214 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 273 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296 V+LG +R+ A LL + + + ++ + + E ++ + Sbjct: 274 GVVLGGRTARSRDAKMAGLLDRYLGRASSSGGAKLVASVGAREPVEVASAAEASDVPVPL 333 Query: 297 CTTQKEIINYNTQMKEAKD 315 + + A D Sbjct: 334 NAPRPADDLAAKSLAYADD 352 >gi|71065253|ref|YP_263980.1| penicillin-binding protein 6 [Psychrobacter arcticus 273-4] gi|71038238|gb|AAZ18546.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Psychrobacter arcticus 273-4] Length = 388 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 18/343 (5%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 Q +V ++++M + + Y L+D NTG ++A+ + PASLTK+MT+ Sbjct: 12 QLVVGVSISMSAVMASAAIQQPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTS 71 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPP---SNSTFKKGSTMTLDNALKLLIVKSANDI 119 Y++ L T + +S NA S + ++ + L+ +I++S ND Sbjct: 72 YIIEQRLASGDLKETDQVLMSPNAWCRGSNSQSCMYVPVNKSASVIDMLRGIIIQSGNDA 131 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 + A+AE + +E F MN ++ +G+ THF+N+ G+ + GH +A D+A LS I Sbjct: 132 SKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPEEGHQASALDLAKLSRAIIK 191 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + Y + K G N N + T DG+KTG T A+G+ + AS+ + L Sbjct: 192 NSGDYYRIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRL 251 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI---SEEV 296 I+VI+G + R S LL+ GF + T + ++VP ++E+ Sbjct: 252 ISVIMGTESQQARADQSRELLNWGFGHFTT-------VTQAPAGQFVSKVPVWFGEAKEI 304 Query: 297 CTTQKEIINYNTQMKEAKDKESHFID----FEKITLLKNKITK 335 + + T K K+K S ID E +I K Sbjct: 305 EVVTADNLQILT-TKTQKNKISTVIDIPESLEAPIKKGQEIGK 346 >gi|317496786|ref|ZP_07955116.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895798|gb|EFV17950.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 399 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 24/299 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 + L++ A+ + S P ++ +++ + ++ D Sbjct: 5 KVILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAIVMEQESKEILFAKDKDKEL 64 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G + +K + Sbjct: 65 APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A D+A Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDTKGHVTSAYDIA 184 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCA 223 +++ + +P+ Y +I I K NTN + + G GMKTG T Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYI 276 +GF + A+A + +IAV++G R K + +LL GF N +T RK+I I Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKEIGRI 303 >gi|281416665|ref|ZP_06247685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] gi|281408067|gb|EFB38325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum JW20] Length = 396 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 17/324 (5%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + ++D +TG V+ E AS TK+MTA V L + + Sbjct: 34 PPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKV 88 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+ + Sbjct: 89 SSRAASIWGSTIKLKPGEELTLRELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL T F HG+ GHY+TA ++A+L+ P + K I + Sbjct: 149 RELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQ-NPVFAQIVATKSTTITNRSLYT 207 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L Sbjct: 208 TNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDY 267 Query: 263 GFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE-----VCTTQKEIINYN-TQMKEA 313 F N + + + + + + VP ++ E + +KE + T + Sbjct: 268 AFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLDETI 327 Query: 314 KDKESHFIDFEKIT--LLKNKITK 335 K ++ KI + I + Sbjct: 328 KAPVYKGVEVGKIEFFVDGKLIGR 351 >gi|226951361|ref|ZP_03821825.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. ATCC 27244] gi|226837883|gb|EEH70266.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 [Acinetobacter sp. ATCC 27244] Length = 397 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 3/260 (1%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 S LS Y L+D TG ++A D PAS+TK+MT++++ L + Sbjct: 31 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQG 90 Query: 73 KAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K + ++++A S T T+ L+ +IV+S ND + A+AE + Sbjct: 91 KLTEDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAG 150 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 E F MN +K LG++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y + Sbjct: 151 NEGTFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYS 210 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K G K N N + T DG+KTG T +GF + S+ +G LI+VI G Sbjct: 211 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSM 270 Query: 250 NTRNKVSASLLSMGFYNKTD 269 N R + +LL+ GF N Sbjct: 271 NERANQTRALLAWGFANFET 290 >gi|225174857|ref|ZP_03728854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169497|gb|EEG78294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 389 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 128/265 (48%), Gaps = 10/265 (3%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M+ + L+D +G V+ EN PAS+TK+MT + L+E Sbjct: 16 MVGAGTAAAAPEFEFSSKAQLLMDVGSGEVLYENNIHEQLYPASVTKIMTMLLAMEALEE 75 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K + +S+ A+ + S G +T ++ + + V SAND + A+AE L + Sbjct: 76 GKVKPDDLVPVSEAAAAHGGSQIFLSPGDRITFEDLMIGIGVGSANDGSWAMAEFLAGSA 135 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 FV MN ++ LG++ T+FMN HG+ HYTTA D+A++S + +P+ + I Sbjct: 136 DAFVTQMNEKARELGMNNTNFMNPHGLHDENHYTTAYDIALMSRELLR-YPKIHEWITIW 194 Query: 192 GLE---------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 E +G N N V + G DG+KTGFT +G + A+A +GD +AV Sbjct: 195 MDEEFLKGKIQKEEGVYLSNANRIVRYYDGGDGLKTGFTSEAGNCVSATAKRGDTRFMAV 254 Query: 243 ILGALDRNTRNKVSASLLSMGFYNK 267 ILGA R + +LL GF N Sbjct: 255 ILGAPGRPALFDEAKTLLDYGFANY 279 >gi|317121887|ref|YP_004101890.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591867|gb|ADU51163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 438 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 8/254 (3%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D TG + D PASL K+MT +VF L+E + L + +S+ A Sbjct: 79 QARSAVLVDATTGQELYAQNADELIPPASLAKIMTLDLVFHALEEGRLALDQQVPVSEAA 138 Query: 87 SEY-------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 PS + G + +++ ++ + V S ND + +AE++ +E+ FV+ MN Sbjct: 139 WRLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAVASGNDASTVLAEAVAGSEEAFVRLMN 198 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK- 198 + +G+ + F N+HG+ + TARDMA L+ + P + Y +K E K Sbjct: 199 QHAAEIGMKNSVFSNSHGLPGGQQHVTARDMARLALHVLEAHPDILRYTSLKYFEWKDFA 258 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 PN N + DG+KTG +G+++VA+A GD+ L++V+LGA R S Sbjct: 259 PQPNYNRLIFRDPRVDGLKTGHLSEAGYHLVATARDGDRRLVSVVLGAASDALRVGESQR 318 Query: 259 LLSMGFYNKTDRKK 272 LL GF T+ + Sbjct: 319 LLDYGFQQFTNTRV 332 >gi|261251421|ref|ZP_05943995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] gi|260938294|gb|EEX94282.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891] Length = 388 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 11/278 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +FL A+ ++ ++ A T Y L+D +TG V+ + + NPAS Sbjct: 4 RFLTATALLSTISLSFGVTAAPTIIPDPPALGAKGYILMDYHTGEVLVQKNSEKKLNPAS 63 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112 LTKLMTAYV + L + IS+NA S + G+ + L + + LI Sbjct: 64 LTKLMTAYVAGQEVNSGNIALDDQVRISRNAWAKNFPDSSKMFIEVGTDVQLMDLYRGLI 123 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND +VAIAE + +E FV MN+ S+ LGL+ T + N HG+ G Y+T D+A+ Sbjct: 124 VQSGNDASVAIAEHVAGSEDAFVSLMNSWSQKLGLANTSYTNPHGLDSDGLYSTPYDIAL 183 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVAS 231 LS I D P + G N N + L DGMKTG+T +G+++ S Sbjct: 184 LSQAIIRDLPDIYPLYSETAYTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATS 243 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A GD LI+V++G+ +R S LLS GF Sbjct: 244 ATSGDMRLISVVMGSSSAKSRESESKQLLSYGFRFFDT 281 >gi|218529374|ref|YP_002420190.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218521677|gb|ACK82262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 496 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 10/300 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + A+ +++ ++ ++D +G V+ PW PAS+TKLMT Sbjct: 8 RLIGSLTALGLMAGAASAVTAP-------ILVVDAESGKVLYSQGATDPWYPASITKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ Sbjct: 61 TYVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSW 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E L + + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DF Sbjct: 121 AIGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDF 180 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + F I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I Sbjct: 181 PNQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIIT 240 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V++G R+ +A L GF ++ N++ P++ +C +K Sbjct: 241 VVMGQPSARERDIKAADLFDYGFGQSAG--WTAPTLESLPPSNVAA-PPDMRPYICDKRK 297 >gi|58039077|ref|YP_191041.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] gi|58001491|gb|AAW60385.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] Length = 348 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 142/267 (53%), Gaps = 5/267 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + FL+ AM + A+ ++D TG V++ + PASLTKLMT Sbjct: 7 KAFLLCAMTAMGLG----SAKAQYAGHISSYVMDARTGAVLSATDAELQRYPASLTKLMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F L+ + L + +S +AS PS G+ +T++ + L+ KSAND A Sbjct: 63 LYLTFRALEAHQITLDEQVPVSIHASVQAPSKLGLVPGTRLTVEQGILGLVTKSANDAAC 122 Query: 122 AIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L ++ +F Q M ++ LG++ T F NA G+ TTA D+A+LS + +D Sbjct: 123 ALGEFLGGGDEVRFAQLMTQQARALGMTNTTFRNASGLPDPDQVTTAHDLALLSQHLISD 182 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY HYF + + PN + + + GADG+KTG+T +G N++ SA +G+ LI Sbjct: 183 FPQYYHYFNVPSFYFHRRMVPNHDPMLKIYAGADGLKTGYTDLAGHNLITSAQRGNVRLI 242 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK 267 V++GA + R+ SLL GF ++ Sbjct: 243 GVVMGAPNNTRRSMEMVSLLDKGFADE 269 >gi|71274450|ref|ZP_00650738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon] gi|71900446|ref|ZP_00682578.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] gi|71164182|gb|EAO13896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon] gi|71729811|gb|EAO31910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1] Length = 347 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 151/318 (47%), Gaps = 16/318 (5%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D +G V+A PASLTK+MT+YV+ + +K K + +++NA Sbjct: 1 MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N + Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKD-----KE 317 + +V + V + + ++ ++ K Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300 Query: 318 SHFIDFEKITLLKNKITK 335 + K+TL + + Sbjct: 301 GQSVGKVKVTLDGKVVAQ 318 >gi|163850650|ref|YP_001638693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163662255|gb|ABY29622.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 501 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 10/300 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + A+ +++ ++ ++D +G V+ PW PAS+TKLMT Sbjct: 8 RLIGSLTALGLMAGAASAVTAP-------ILVVDAESGKVLYSQGATDPWYPASITKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ Sbjct: 61 TYVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSW 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E L + + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DF Sbjct: 121 AIGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDF 180 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + F I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I Sbjct: 181 PNQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIIT 240 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V++G R+ +A L GF ++ N++ P++ +C +K Sbjct: 241 VVMGQPSARERDIKAADLFDYGFGQSAG--WTAPTLESLPPSNVAA-PPDMRPYICDKRK 297 >gi|217976731|ref|YP_002360878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502107|gb|ACK49516.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 407 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%) Query: 3 QFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L ++ +A+L+ + P + A +P+ L+D TG V+ E D P PAS K Sbjct: 9 HILRLMGLAILAGVCFGSGPASAQAIQTSVPHAILIDVETGSVLFEKDADAPVTPASTVK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 +MTA VVF L + + L TIS++A S+ S + +++ ++ L++ Sbjct: 69 VMTADVVFGELAQGRIKLDDEFTISEHAWRTGGAPARASSMFAALNSRVRVEDLIRGLVI 128 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND A+A+AE + +E F M LGL+ + F N G T R+M IL Sbjct: 129 DSGNDAAIALAEGVAGSETAFAGLMMKRGHELGLTRSVFTNPWGKDDPEQKVTPREMTIL 188 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + +P Y YF K + N N + +GADG+KTG ASGF +V SA+ Sbjct: 189 AAHVIATYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDIGADGLKTGNIDASGFGLVGSAV 248 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 Q Q LI + GA R + + L F + + + Sbjct: 249 QNGQRLILALYGATTAKERAEEARKLFLWAFRSFSSK 285 >gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] gi|99038656|gb|ABF65268.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] Length = 496 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 1/254 (0%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ D +PASLTK+MT Y+ F ++ + L T IT+S+NA PP Sbjct: 1 MVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPP 60 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S ++G + L ++ VKSAND A AI E++ +E F + MN T+K LG++ T Sbjct: 61 SELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTT 120 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTF 210 F NAHG+ +GH +TARDM IL + D+P+Y + F K NTN + + Sbjct: 121 FKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAY 180 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADG+KTG+T A+GFN+V+SA +GD+ +IA + G RN A LL +GF Sbjct: 181 RGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGKSTAARNAKIAELLDLGFRRAPAY 240 Query: 271 KKINYIIKDFYQQN 284 K+ Y N Sbjct: 241 AKLQKPPMPPYLGN 254 >gi|294788907|ref|ZP_06754147.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC 29453] gi|294483009|gb|EFG30696.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC 29453] Length = 411 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 133/270 (49%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T Y + D + ++A D PASLTK+MTAY+VF L E K + + Sbjct: 56 APTIAATAYLVKDLQSNQILASKDIDKSIEPASLTKVMTAYIVFKNLNEGKLKPEQMLKV 115 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + S + +++ + +K LIV S ND A+ +AE L +E KFV MN + Sbjct: 116 SEKAWKVEGSRMFLEMKKPVSVADLIKGLIVHSGNDAAITLAEGLSGSEAKFVDLMNAEA 175 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LG++ THF N G+ H TT +D+ LS I DFP Y + +K G K PN Sbjct: 176 KRLGMNQTHFENTTGLPSPKHLTTVQDLMTLSDAIIHDFPDYYKIYSLKEFTYNGIKQPN 235 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + DGMKTG T ++G+N++AS+ + + ++++++G + R S+ LL+ Sbjct: 236 RNLLLFRDPSVDGMKTGHTSSAGYNLIASSKRNGRRVVSIVVGTASQEARATESSKLLNF 295 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 N K + P++ Sbjct: 296 ALQNFDTPKMYQAGQSVARIKVFKGASPDV 325 >gi|52425884|ref|YP_089021.1| DacC protein [Mannheimia succiniciproducens MBEL55E] gi|52307936|gb|AAU38436.1| DacC protein [Mannheimia succiniciproducens MBEL55E] Length = 394 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 151/340 (44%), Gaps = 9/340 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L+ + + + + F + Y ++D N+G V+A PD PASLTK+MT+YV Sbjct: 17 LLALPLTVSAEDVNFGIVPPQVNAQTYVVMDYNSGAVLASLNPDQRQYPASLTKMMTSYV 76 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + LK+ K T IT+ +++ S +T++ + +I+ S ND V Sbjct: 77 IGDALKQGKIHNTDTITVGESSWGKNFPDSSKMFLNLNQQVTVEQLNRGIIIVSGNDACV 136 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + T F+ MN ++ GL THF HG+ Y++ARDMAI+ I D Sbjct: 137 AMAEHVSGTTDNFINSMNKYAEQFGLKNTHFTTVHGLDDANQYSSARDMAIIGAHIIRDL 196 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQ-GDQSL 239 P+ + K K PN N + + DGMKTG T +G+N+VASA + L Sbjct: 197 PEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATNADNMRL 256 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295 I V++G R S LL F + K + +D Y N + ++ Sbjct: 257 ITVVMGVPTYKGREVESKKLLQWAFNSFDTFKTLEAGKAVTNQDIYYGNQGKVQIGVLQD 316 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 T + N + + + DK+ K ++ I + Sbjct: 317 RFITVPKGRNADLKARFELDKKYLEAPLAKGQVVGKVIYQ 356 >gi|89074975|ref|ZP_01161420.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89049214|gb|EAR54778.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 391 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 9/269 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 V I+ +L++ S A + P Y L+D N+G ++A N PASLTK+M Sbjct: 11 VAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGNNEYEKLAPASLTKIM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T++V+ +K + ISKNA S + G ++ + + + +IV S N Sbjct: 71 TSFVIGQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDSGN 130 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VA+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + Sbjct: 131 DACVAMAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILTRSL 190 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + K G N N + + DG+KTG T +G+++V++A +G+ Sbjct: 191 IRDLPNEFKIYDEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGN 250 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFY 265 LI+V++G +N R S LL+ GF Sbjct: 251 MRLISVVMGTASKNARLAESKKLLNFGFR 279 >gi|291559238|emb|CBL38038.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SSC/2] Length = 399 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 24/299 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 + L++ A+ + S P ++ +++ + ++ D Sbjct: 5 KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G + +K + Sbjct: 65 APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A D+A Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCA 223 +++ + +P+ Y +I I K NTN + + G GMKTG T Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYI 276 +GF + A+A + +IAV++G R K + LL GF N +T RK+I I Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARILLDYGFSNCQRIHSETTRKEIGRI 303 >gi|332716423|ref|YP_004443889.1| penicillin-binding protein [Agrobacterium sp. H13-3] gi|325063108|gb|ADY66798.1| penicillin-binding protein [Agrobacterium sp. H13-3] Length = 372 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 122/284 (42%), Positives = 173/284 (60%), Gaps = 3/284 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG VI+ W PASLTKLMTAY+ FS +K K T + +SK A++ P Sbjct: 38 MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKLSPQTEVVMSKKAADQPA 97 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK G +T+D+ALKLL++KSANDIAVAIAE++ T FV MN ++ LG+S+T Sbjct: 98 SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTR 157 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++NA+G+ G YTTARD+A+L+ IK +FP+Y HYF ++G+ K Y N N VG F Sbjct: 158 YINANGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKDYANFNMLVGRFD 217 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGF CASGFN V+SA++ +S+I V+LGA R SA LL MG + + Sbjct: 218 GADGMKTGFICASGFNQVSSAVRNGRSVITVVLGADSLAGRTDQSADLLQMGLTAPSGQ- 276 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + EV ++S E+C + + ++ + + Sbjct: 277 --GVSLASLAPYGDTAEVNDVSAEICNPKAAKVRSESRDETGRM 318 >gi|114328315|ref|YP_745472.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] gi|114316489|gb|ABI62549.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] Length = 456 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 145/262 (55%), Gaps = 1/262 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + + F + A+ Y ++D NTG V++ + PD +PASLTK+MT Y++ Sbjct: 65 AAFLTTAATGFSTTAYAQIGSERYSSIVVDANTGAVLSASSPDELRHPASLTKMMTLYML 124 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L++++ L + +S +A+ PS G+ +T++ A+ L+ KSAND A A+ E Sbjct: 125 FEALRDRRVSLDDLVPVSGHAASMSPSKLGLVPGTRLTVEEAILGLVTKSANDAAAAVGE 184 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E++F Q M ++ LG++ T F NA G+ +TA DMA+L+ + DFP Sbjct: 185 MLGGSEEQFAQMMTIRARALGMTRTVFRNASGLPDPDQISTAHDMAVLARHLILDFPSEY 244 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 YF PN + + + GADG+KTG+T ASG N+V SA++ D LI V+ G Sbjct: 245 RYFSTPSFVFHRHVIPNHDRMLSIYPGADGLKTGYTNASGLNLVTSALRSDVRLIGVVFG 304 Query: 246 ALDRNTRNKVSASLLSMGFYNK 267 A ++ R+ A+LL+ GF + Sbjct: 305 ASNKYERDSHMAALLNAGFRQE 326 >gi|45644640|gb|AAS73028.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine gamma proteobacterium EBAC20E09] Length = 382 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 7/283 (2%) Query: 1 MRQFLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+ L + ++SNI F+ A L Y L+D T VIA++ D PAS+T Sbjct: 1 MKNLL--LFTLLVSNIILGQSFVPNAPELNLKGYILIDPTTNTVIAQSNSDGLIEPASMT 58 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTAYVV ++ + + IS+ A + S + G +++ + LK +I++S N Sbjct: 59 KVMTAYVVADQIQNDLISIDDEVLISEKAWKMGGSKMFIEVGKRVSILDLLKGIIIQSGN 118 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D AVAIAE + TE FV MN + +LG++ T F+N+ G+ H TTA D+AIL+ Sbjct: 119 DAAVAIAEYVGGTEDGFVDLMNAYAASLGMNNTSFINSTGLPDVNHLTTAEDLAILTSNF 178 Query: 178 KTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 T FP+ F+ K E G N N + +DG+KTG T ++G+ ++ SA +G Sbjct: 179 ITKFPEIYALFKEKEFEYGGISGNKYNRNKLLWRDETSDGVKTGHTSSAGYCLIGSAKRG 238 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 + LI V+ G+ N + LL GF K + + Sbjct: 239 NMRLITVVAGSDSANNSFSDTQRLLEYGFRFYATEKYFDVGTE 281 >gi|254518746|ref|ZP_05130802.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] gi|226912495|gb|EEH97696.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. 7_2_43FAA] Length = 401 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 38/372 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNT 38 M + + I+ + ++ P + E L++ + Sbjct: 1 MNKVVAIVLSLLSISVVPVKADVEPYDTSIETYEEWTTEVFSDEGINVDAKSALLIEPKS 60 Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98 G ++ E D + PAS+TK+MT + + K L +T S+NA + S Sbjct: 61 GKILYEKNIDEKFAPASVTKIMTMLLTMEAVDSGKITLQDKVTCSENAKKMGGSTMLLDT 120 Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158 G T++ +K + + S ND AVA+AE L TE FV+ MN ++ LG+ T F N +G+ Sbjct: 121 GEIRTVEELIKGVAIASGNDAAVALAEYLGGTEDAFVEMMNKRAQELGMVNTTFKNCNGL 180 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGA 213 GH +TARD++I+S + P + Y I I +G+K P N N V F G Sbjct: 181 PIEGHLSTARDISIMSLELLK-HPTILKYSGIYMETISEGRKSPIELVNHNKLVRFFEGC 239 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 DG+KTG+T + + I A+A + +++VI+GA RN+ + LL+ GF +K + Sbjct: 240 DGLKTGYTEEAKYCISATATRNGVRMLSVIMGAPTYKVRNRDAGMLLNYGFSKFEGKKLL 299 Query: 274 --NYIIKDFYQQNLSNE--VPNISEEVC------TTQKEIINYNTQMKEAKDKESHFIDF 323 + +++ Y +++ V E++ T ++ + + K+ + Sbjct: 300 SKDEDVENIYLSKQTDKFLVARAKEDLVAIVPKGTNEELEKRIVIDEVKKEYKQGDIVGK 359 Query: 324 EKITLLKNKITK 335 ++ L + KI + Sbjct: 360 CEVYLGEEKIGE 371 >gi|163869341|ref|YP_001610597.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161019044|emb|CAK02602.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 363 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 191/315 (60%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ + + + ++ S+A+ + +D T H++ N W PASLTKLM Sbjct: 1 MQRLFYNLFFSFILSLSSTFSLAQP-----FISVDVTTEHILKHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV+F + + PITIS+ A++ P S +K GS +TLD AL + +VKS ND+A Sbjct: 56 TAYVIFRAMSRGEISPNKPITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A++E++ ++K FV+ MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAMSEAIAGSQKDFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++ Sbjct: 176 FPQYAHYFSIPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILGA + + R + +A LL +GF ++ + +K Y N++ + N+ ++ CT Sbjct: 236 IIAVILGANNVSEREEKAAQLLEIGFLHQGSPQLTLATLKP-YGSNIT-QANNMRQQTCT 293 Query: 299 TQKEIINYNTQMKEA 313 + ++ N+ + Sbjct: 294 PEAIKMHANSYDDQG 308 >gi|240137704|ref|YP_002962175.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens AM1] gi|240007672|gb|ACS38898.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens AM1] Length = 501 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 10/300 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + A+ +++ ++ ++D +G V+ PW PAS+TKLMT Sbjct: 8 RLIGSLTALGLMAGAASAVTAP-------ILVVDAESGKVLYSQGATDPWYPASITKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ Sbjct: 61 TYVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSW 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E L + + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DF Sbjct: 121 AIGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDF 180 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + F I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I Sbjct: 181 PNQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIIT 240 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V++G R+ +A L GF ++ N++ P++ +C +K Sbjct: 241 VVMGQPSARERDIKAADLFDYGFGQSAG--WTAPTLESLPPSNVAA-PPDLRPYICDKRK 297 >gi|255019743|ref|ZP_05291820.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254970811|gb|EET28296.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 388 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 132/274 (48%), Gaps = 5/274 (1%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L+D ++G +IA + PASLTKLMTAY+ + + + +S A + Sbjct: 46 SYVLMDYDSGQIIAAKEENLHRAPASLTKLMTAYLTYQAMANGSLRPDETVNVSNTAWKT 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G +T+D L L++ S ND AVA+AE++ ++ FV MN+ ++ L L Sbjct: 106 GGSRMFIQPGLPVTVDQLLHGLLIDSGNDAAVALAETVGGSQAGFVTLMNDAARQLHLDN 165 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH+ N +G+ YTTA D+A LS + +PQ + + K + N + Sbjct: 166 THYSNVNGLPDSNLYTTALDVAKLSRALIQQYPQVIAITRQKSYTYNKITQRSWNPVLFR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTG T SG+ I A+A + + LIAV+LG + SLL+ G+ D Sbjct: 226 DPSVDGLKTGLTDESGYCIDATAQRNGRRLIAVVLGGPSWSGSTNAVESLLNYGYRFFED 285 Query: 270 ---RKKINYI--IKDFYQQNLSNEVPNISEEVCT 298 K + + I+D + V +E + T Sbjct: 286 HELYKPMTEVGEIRDPNLSPMRVPVAVATEVIVT 319 >gi|300692700|ref|YP_003753695.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum PSI07] gi|299079760|emb|CBJ52436.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum PSI07] Length = 397 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 15/323 (4%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L D +G V+ D PASLTKLMTAY+ F +++ K +T Sbjct: 36 APQVAARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAFEAVRDGKLKYDQMVTP 95 Query: 83 SK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 ++ + + S + G + L+ LIV+S ND A+ +AE++ TE FV MN Sbjct: 96 TETVRSVKTDESRMFLQAGKPAAVRELLQGLIVQSGNDAALVLAEAVGGTEANFVMLMNR 155 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K Sbjct: 156 EAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTTALIRDFPEDYKFYSQKEFTYNNIKQ 215 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRN 253 PN N + DG+KTG T ++G+ ++ SA + + L++V++G R Sbjct: 216 PNRNRLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDMPNASRRLLSVMIGTKSEQVRT 275 Query: 254 KVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE--VCTTQKEIINYN 307 + S +L+ G+ + D Y+ ++E+ + + Sbjct: 276 QESLKVLNYGYQFFDTLRLYEARQALQTPDVYKGQAKTVKLGVAEDKWITVPKGSGSRLK 335 Query: 308 TQMKEAKDKESHFIDFEKITLLK 330 ++ + + + + LK Sbjct: 336 PVLERKEPLIAPIAQGQPLGTLK 358 >gi|170744628|ref|YP_001773283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168198902|gb|ACA20849.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 506 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 149/270 (55%), Gaps = 4/270 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PP Sbjct: 34 LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISAEAAAEPP 93 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S F+ G+ +TLDNALK+++VKSAND+A AI E+L + F MN T++ LG+ +H Sbjct: 94 SKMGFRPGTQLTLDNALKIIMVKSANDVAWAIGENLGGSIDNFAALMNETAQRLGMRDSH 153 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + N +G+ +T+ARDMAIL + DFP+ F I ++ N N +G + Sbjct: 154 WYNPNGLPDPRQWTSARDMAILGRALLRDFPENRDLFSISAIQFGRAVMANHNGLLGRYA 213 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF + Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGFGQSSWG- 272 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 + D + P++ VC +K Sbjct: 273 --GSGLADLP-ASAMPAPPDLRPYVCDRRK 299 >gi|293609746|ref|ZP_06692048.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828198|gb|EFF86561.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 397 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 159/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 16 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 75 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 76 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 135 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 136 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLA 195 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 196 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 255 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F +++ Sbjct: 256 GPMRLISVIFGTPSMSERADQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQV 315 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 316 GLAENFSVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 368 >gi|332653043|ref|ZP_08418788.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332518189|gb|EGJ47792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 367 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 9/251 (3%) Query: 18 PFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P AE T L++ +G V+ D P AS TKLMTA V L Sbjct: 21 PRAGAAEVTVSAQSAVLMEAESGRVLYAKDADTPRLIASTTKLMTALVALESGH----SL 76 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +TI A+ S+ K G T+ L+ L +++ S ND A A+A + + + F Q Sbjct: 77 EEDVTIPAEAAGVEGSSLYLKTGETVKLETLLYGMLLHSGNDAATAVALTCAGSLEAFAQ 136 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN S+ LG++ +HF N G+ HY++A DMA+L+ P+ + ++ Sbjct: 137 KMNEKSQQLGMTNSHFTNPTGLDGEEHYSSAYDMALLARACL-AVPELKEITATRSTTME 195 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G+ + N N + + G GMKTG+T A+G +V++A + +LIAV L A Sbjct: 196 GRTFVNHNKLLWRYEGCVGMKTGYTQAAGRTLVSAAERDGMTLIAVTLNAPSD---WADH 252 Query: 257 ASLLSMGFYNK 267 A++L GF + Sbjct: 253 AAMLDYGFEHY 263 >gi|110678603|ref|YP_681610.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter denitrificans OCh 114] gi|109454719|gb|ABG30924.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter denitrificans OCh 114] Length = 485 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 4/322 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L A+ + I P + A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 13 LYAFAVLWMLVILPLTAAAAPYAA---FVMDARTGEVLHSRNADTRLHPASLTKMMTLYI 69 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T + IS+ A+ PPS K G + ++ +KSAND A AI Sbjct: 70 AFQAVENGEISLDTKVKISRFAAAEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIG 129 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L +E F + MN T+K LG++ T F NAHG+ + GH +TARDM++L + D+P+Y Sbjct: 130 EALEGSEAAFARRMNRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEY 189 Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +IA + Sbjct: 190 YNLFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATV 249 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 G RNK A LL MGF R + K Y + + + + +I Sbjct: 250 FGGTSTIARNKRVAELLDMGFKRAPSRATVRKPKKPSYFATRHQGTRDATIMTASLRPQI 309 Query: 304 INYNTQMKEAKDKESHFIDFEK 325 ++ + E E+ Sbjct: 310 RPLVAAVESPVNAEDIIAAVEQ 331 >gi|255320588|ref|ZP_05361766.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter radioresistens SK82] gi|262378578|ref|ZP_06071735.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164] gi|255302350|gb|EET81589.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter radioresistens SK82] gi|262299863|gb|EEY87775.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164] Length = 382 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 153/345 (44%), Gaps = 15/345 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSSPPELNNKSYVLMDYETGQILAAKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T ++ L+ +IV+ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCRGSSSESCMYVPLNGTASVLEMLRGIIVQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G+ THF+N+ G+ GH +TA+DMAIL+ Sbjct: 121 SGNDASKAVAEHVAGNEGTFAHMMNQEAKRIGMVNTHFVNSTGMPAEGHVSTAKDMAILA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +GF + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGFCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQQNLSNEV 289 G LI+VI GA R + LL G+ N K++ K ++ Q EV Sbjct: 241 GPMRLISVIFGAPTMQERATQTRDLLGWGYANFETANVQPAKQVLAKSKVWFGQEYEVEV 300 Query: 290 PNISE-EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 V + + TQ+ + +K ++ + Sbjct: 301 GLAENFNVTMPKGQADKIKTQLVV---QPKLNAPLQKGQVVGKLV 342 >gi|325122968|gb|ADY82491.1| D-ala-D-ala-carboxypeptidase [Acinetobacter calcoaceticus PHEA-2] Length = 382 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 159/353 (45%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G LI+VI G + R + +LL+ GF N + + N ++ F +++ Sbjct: 241 GPMRLISVIFGTPSMSERADQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQV 300 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 301 GLAENFSVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 353 >gi|296133697|ref|YP_003640944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296032275|gb|ADG83043.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 413 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 21/308 (6%) Query: 2 RQFLVIIAMAMLSN------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 R +++ + + I P + L+D +G V+ PD PAS Sbjct: 6 RSISILLVVFFVITVVGGPVIAPVYAQEPGIVGKAGVLIDARSGQVLYAKNPDLRLPPAS 65 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++T + + + +T+SKNA S+ G T+TL++ L +++ S Sbjct: 66 TTKILTVAIALE-----EGNVNDKVTVSKNAVTQEGSSIYLTAGETLTLEDLLYGVLLSS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AVA+AE + + FV+ MN +K G + ++F N +G+ HYTTARD+A+++ Sbjct: 121 GNDAAVAVAEHIAGSVPAFVKLMNKKAKEWGATNSNFCNPNGLPNDEHYTTARDLAMIAK 180 Query: 176 RIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + P + K EI + N N + + GA+G+KTG+T + +V Sbjct: 181 H-AMELPLFREMAATKVKEIKRADPANFFRLINHNKLLWRYEGANGIKTGYTRVAQQCLV 239 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSN 287 +SA +GDQ IAV+LG++ N S +LL GF N K + I++ ++ + Sbjct: 240 SSAKRGDQEFIAVVLGSVGNNI-WTDSMALLDYGFKNFRTTKLVEKGKFIQEISVKDGTG 298 Query: 288 EVPNISEE 295 +V ++E Sbjct: 299 KVRVVTER 306 >gi|56698478|ref|YP_168853.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria pomeroyi DSS-3] gi|56680215|gb|AAV96881.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria pomeroyi DSS-3] Length = 477 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 8/286 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F I +A LS + A ++D TG V+ D +PASLTK+MT Y Sbjct: 18 FFAIWMIAALSGVARAAPYA-------AMVIDARTGEVLHATNADTRLHPASLTKMMTLY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ + + T + I A++ PPS + G + ++ VKSAND A +I Sbjct: 71 IAFEAVRNGELTMDTQVRIDPFAAKEPPSKLGLRAGQKIAFRYLVRAAAVKSANDAATSI 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 ++ +E F + MN T+K LG++ T F NAHG+ + GH +TARDM L + D+PQ Sbjct: 131 GIAISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTESGHLSTARDMTTLGRHLLYDYPQ 190 Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + K NTN + + GADG+KTG+T A+GFN+VASA +GD+ +IA Sbjct: 191 YYNLFSRRETSAGIKTVANTNRRLLDAYQGADGIKTGYTQAAGFNLVASAKRGDERVIAT 250 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 + G RN A LL +GF R I Y + Sbjct: 251 VFGGKSSTARNAKVAELLDLGFRKAPSRAPIRRPDMPLYAGEVGES 296 >gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300076378|gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 169/344 (49%), Gaps = 22/344 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ L +A +LS S T + LLD + VIA + PD PASL Sbjct: 1 MKKLLAALAATVLSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKLLIVK 114 TKLMTAY+ F+ L++K+ L +++S NA + PS+ + +++DN L LI Sbjct: 61 TKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND AVA+AE++ TE FVQ MN ++ GL+ THF N HG+ YTTARD++IL Sbjct: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180 Query: 175 WRIKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + DFP+Y Y+ +K PN N + DGMKTG T ++G++++ SA Sbjct: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 Query: 234 Q----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 + G++ LI+V++G + R + S LL+ GF N K Y + + Sbjct: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVK--------LYAKGQPVDT 292 Query: 290 PNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLK 330 P++ + K Y T K DK +D + Sbjct: 293 PDVWKGSQGKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAP 336 >gi|256003606|ref|ZP_05428595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|255992397|gb|EEU02490.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 2360] gi|316939774|gb|ADU73808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum DSM 1313] Length = 396 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 17/324 (5%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + ++D +TG V+ E AS TK+MTA V L + + Sbjct: 34 PPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKV 88 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+ + Sbjct: 89 SSRAASIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKA 148 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 + LGL T F HG+ GHY+TA ++A+L+ P + K I + Sbjct: 149 RELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQ-NPVFAQIVATKSTTITNRSLYT 207 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L Sbjct: 208 TNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDY 267 Query: 263 GFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE-----VCTTQKEIINYN-TQMKEA 313 F N + + + + + + VP ++ E + +KE + T + Sbjct: 268 AFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLDETI 327 Query: 314 KDKESHFIDFEKIT--LLKNKITK 335 K ++ KI + I + Sbjct: 328 KAPVYKGVEVGKIEFFVDGKLIGR 351 >gi|169831388|ref|YP_001717370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638232|gb|ACA59738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 366 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + LL+ +G ++ E P AS+TK+MT + L KA L I S Sbjct: 16 PETEAESAVLLEPVSGQILYEKEPYKEQPIASVTKIMTMLLAVEALDSGKAKLDDIIVTS 75 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 ++A+ S M+ L + SAND +VAIAE + +E+ FVQ MN+ + Sbjct: 76 EHAAGMGGSQIYLAPQEKMSFREMLISVATGSANDASVAIAEHVAGSEEAFVQMMNDRAA 135 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYP 201 LG TH++N G+ GHY+ A D A++ +P + IK +++G K Sbjct: 136 ELGAKHTHYVNPTGLPAEGHYSCAYDQAVILREALK-YPLFREVSAIKEYDLRGGEFKLW 194 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + + GAD KTG+T + + + +S + + LIAV+LG + + S L + Sbjct: 195 NTNKLLWWYPGADAGKTGWTNEAKYCLASSVKKDNLRLIAVVLGVPETKGHFRESIKLYN 254 Query: 262 MGFYNKT 268 GF Sbjct: 255 WGFARFE 261 >gi|254560273|ref|YP_003067368.1| serine-type D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] gi|254267551|emb|CAX23393.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor [Methylobacterium extorquens DM4] Length = 501 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 10/300 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + A+ +++ ++ ++D +G V+ PW PAS+TKLMT Sbjct: 8 RLIGSLTALGLMAGAASAVTAP-------ILVVDAESGKVLYSQGATDPWYPASITKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV +++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ Sbjct: 61 TYVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSW 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AI E L + + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DF Sbjct: 121 AIGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDF 180 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + F I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I Sbjct: 181 PNQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIIT 240 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V++G R+ +A L GF ++ N++ P++ +C +K Sbjct: 241 VVMGQPSARERDIKAADLFDYGFGQSAG--WTAPTLESLPPSNVAA-PPDMRPYICDKRK 297 >gi|332971215|gb|EGK10178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 418 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 35/322 (10%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPASL 56 +I +L ++ LS+ E P Y L++ TG V+A HP+ PASL Sbjct: 19 VIVWGVLLSVGSLLSVGEVFAEPQAEPLDIQTRSYVLMEMETGRVLAGKEEKHPYPPASL 78 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT Y+V +K + + ISKNA+ + G T++ + + SA Sbjct: 79 TKIMTEYLVLEEVKSGRIRWKDEVKISKNAASIGEAQVNLVAGEKRTVEELFHAMAIHSA 138 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----------HGHYTT 166 ND +VA+AE + +E+ FV MN +K LGL +HF+N G+ H + Sbjct: 139 NDASVALAEHISGSERAFVGKMNKEAKRLGLKKSHFINCTGLPSRSYPQPPEVKGEHRMS 198 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV----GTFLGADGMK 217 A D+A L+ R+ D PQ + + + + PN+N + + G DG+K Sbjct: 199 AEDIARLTRRLLRDHPQVIRTTSLPEYIFRQGEKRELILPNSNRMLPGSPHFYDGVDGVK 258 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 TG+T +G++ +A + LI V++G ++ R + LL GF N + + Sbjct: 259 TGYTREAGYSFTGTARRDGMRLITVVMGTDSKSRRFAETEKLLDFGFQNYGMKTLLKKGK 318 Query: 278 KDFYQQNL------SNEVPNIS 293 + EVP ++ Sbjct: 319 PVPKHGKVALRGGEETEVPVVA 340 >gi|325289983|ref|YP_004266164.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] gi|324965384|gb|ADY56163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] Length = 389 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 10/338 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ ++ + ++ P ++ L+D ++G V+ E PAS+TKLMT Sbjct: 13 SLVIAVSCFFMYDVEPLMAANIETSAGSAILIDASSGKVLYEKDAHKRLAPASVTKLMTL 72 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + L+ K L +T S+ A S + G ++L+ L + V SAND VA Sbjct: 73 LIAAEALESGKVNLKDTVTASERACSMGGSQIYLEVGEKLSLEEMLISIAVGSANDACVA 132 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + + ++FV MN +K LGL T+F+N +G+ GHYT+A D+AI++ + +P Sbjct: 133 VAEHINGSLEEFVHQMNEKAKKLGLVDTNFINDNGLPAEGHYTSAYDLAIIA-KESLKYP 191 Query: 183 QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 IK +++G K+ NTN + + G G+KTG+T + + + ++ + LI Sbjct: 192 LISKLTSIKEYDLRGGKFKLYNTNKLLWWYEGTSGLKTGWTQEAKYCLASTVERNGLKLI 251 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVC 297 V++ + S L + GF N + +K K Q+ + +V I ++ Sbjct: 252 CVVMAVPEVRGHFAESMKLYNYGFANYSYKKFAEAGSKQGETTVQKGTAEKVDLIVDKAV 311 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 I + K+ + + S+ + K+ + Sbjct: 312 G----ISIEKGKDKDYRMEISYDQTIHAPVVKGQKLGQ 345 >gi|154245869|ref|YP_001416827.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154159954|gb|ABS67170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 508 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 3/311 (0%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R + +A A+L + + L++ +TG VI + PW+PAS+TKLMT Sbjct: 20 RGLCLGLAAAVLGVGLAGSFLVHPAQANPVLLVEADTGRVIEQKEAGRPWHPASVTKLMT 79 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 YV + +K + L TP+T+S A+ PS FK G+ +TLDNA+K+++VKSAND+A Sbjct: 80 VYVALNAVKNGRLTLDTPLTVSAAAASQQPSKMGFKPGTVVTLDNAMKMVLVKSANDMAW 139 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 + E + + FV MN T+ +LG+S THF N +G+ TTARD+AIL+ I F Sbjct: 140 VVGEGVAGSMPAFVAEMNATAAHLGMSGTHFENPNGLPDPDQITTARDLAILARAIIYHF 199 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P++ F+I ++I N N + + GADGMKTGF C SG+N+VA+A +G++ LIA Sbjct: 200 PEHEALFRIPAIKIGKAVLRNYNRLIDRYPGADGMKTGFVCGSGYNLVATATRGNKRLIA 259 Query: 242 VILGALDRNTRNKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 VILGA R + +A + GF + ++ + N ++ EVC + Sbjct: 260 VILGARSGTARTEQAALMFEKGFQSSWGVFGAAQPLLSNI--SNSGGPAYDMKAEVCGGK 317 Query: 301 KEIINYNTQMK 311 + + + Sbjct: 318 RAVTASEADDE 328 >gi|254709015|ref|ZP_05170826.1| cobalamin synthesis protein P47K [Brucella pinnipedialis B2/94] gi|256030540|ref|ZP_05444154.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] gi|256158532|ref|ZP_05456426.1| cobalamin synthesis protein P47K [Brucella ceti M490/95/1] gi|265987587|ref|ZP_06100144.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] gi|264659784|gb|EEZ30045.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1] Length = 635 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 178/303 (58%), Gaps = 7/303 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296 Query: 299 TQK 301 Q Sbjct: 297 EQA 299 >gi|182625695|ref|ZP_02953464.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] gi|177909097|gb|EDT71572.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] Length = 402 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ ++ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSDKIEKKVVLDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|259908963|ref|YP_002649319.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96] gi|224964585|emb|CAX56098.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96] gi|283478973|emb|CAY74889.1| dacC [Erwinia pyrifoliae DSM 12163] Length = 402 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 8/273 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K Sbjct: 33 MPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDL 92 Query: 80 ITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +T+ K+A S K G + + K ++++S ND ++A+A+ + ++ Sbjct: 93 VTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MNN + LGL THF HG+ G Y+TARDMA++ + D P + K Sbjct: 153 FVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKVF 212 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N N + T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R Sbjct: 213 TFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAIR 272 Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + S LL+ G N + K F Q + Sbjct: 273 FRESEKLLTWGLRNFETVTPVKAG-KAFVTQRV 304 >gi|262278278|ref|ZP_06056063.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202] gi|262258629|gb|EEY77362.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202] Length = 382 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M + I A+ +L S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + ++++A S+ T T+ L+ +I++ Sbjct: 61 KMMTSYIIEQKLLKGDLTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFVNSTGMPAEGHYSTAKDMAVLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKD----FYQQNLSNE 288 G L++VI G R + +LL+ GF N + + N ++ F +++ Sbjct: 241 GPMRLVSVIFGTPSMAERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQV 300 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 + V + + TQ+ + ++ + +L I +K Sbjct: 301 GLAENFSVTMPKGKADGIKTQLVVQPNLNAPLQKGQVVGKLVASLDGKVIAEK 353 >gi|50084413|ref|YP_045923.1| D-ala-D-ala-carboxypeptidase [Acinetobacter sp. ADP1] gi|49530389|emb|CAG68101.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter sp. ADP1] Length = 382 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 158/351 (45%), Gaps = 15/351 (4%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ L + + S L+ Y L+D TG ++A + PAS+TK+ Sbjct: 3 LKSALAALVLLPTFSYAATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKM 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSA 116 MT+Y++ L + + + ++++A S+ T T+ L+ +IV+S Sbjct: 63 MTSYIIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND + A+AE + E F MN +K LG+ THFMN+ G+ GHY++A+DMAIL+ Sbjct: 123 NDASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQH 182 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I D +Y + K G K N N + T DG+KTG T +G+ + S+ +G Sbjct: 183 IIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRGP 242 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKT--DRKKINYIIKD----FYQQNLSNEVP 290 LI+VI G N R + +LL+ GF N + + N ++ F ++N Sbjct: 243 MRLISVIFGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGL 302 Query: 291 NISEEVCTTQKEIINYNTQMKE-----AKDKESHFIDFEKITLLKNKITKK 336 + V + + TQ+ A ++ + TL I +K Sbjct: 303 AENFNVTMPKGQADKIKTQLVVQPKLNAPLQKGQVVGKLVATLDGKVIAEK 353 >gi|167040728|ref|YP_001663713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] gi|166854968|gb|ABY93377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp. X514] Length = 421 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 161/364 (44%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + + + + + P L+D TG V+ + PAS Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L ++++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGDTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYI-- 276 G + ASA + + LI+VI+G N + LL GF N + KK I YI Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDL 293 Query: 277 ------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + +++ EVP E TQ I N +K +K + + K TL Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKDIKTPINK-GDVLGYIKYTLDG 349 Query: 331 NKIT 334 N+I Sbjct: 350 NEIG 353 >gi|86749795|ref|YP_486291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86572823|gb|ABD07380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 419 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 8/286 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++ P L+D +G V+ E D P+S+ KLMT +VF L + + T Sbjct: 51 VAGGYDTDAPSAILIDGESGSVLFEKNADELRAPSSMLKLMTVELVFHLLAKGEIKPTDE 110 Query: 80 ITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 IS+ A S + S + +++ LK I++S ND +A+AE + +E F Sbjct: 111 YKISEYAWRRGGAPAGNSTMFAEIHSKVAVEDLLKGAIIQSGNDSCIALAEGIAGSEPAF 170 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V+ M ++ +GL+ + F N++G+ G+ + R++ L+ I +P F K Sbjct: 171 VERMTKRAREIGLTQSTFANSNGLPDPGNKMSVRELGRLARHIIQTYPNDYKLFSEKEFT 230 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + TF GADG+KTG+T G+ +V SA+Q LI V+ G D + R Sbjct: 231 WNKIRQTNRNPLLNTFNGADGLKTGYTKDGGYGMVGSAVQNGMRLIVVVNGIDDIDDRAS 290 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---VPNISEEVC 297 LL GF N R Y + E VP I E Sbjct: 291 EVKKLLEWGFRNFESRALFASDATIGYARVFGGEKRYVPLIPAEPV 336 >gi|168206139|ref|ZP_02632144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] gi|170662449|gb|EDT15132.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] Length = 402 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ ++ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDSEVEQIPMSQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSDKIEKKVILDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|160895834|ref|YP_001561416.1| serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans SPH-1] gi|160361418|gb|ABX33031.1| Serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans SPH-1] Length = 389 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 8/260 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y L+D V+ D P ASLTKLMT Y+VF L+ KK L + + Sbjct: 31 PPEIAARNYLLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKITLEQRLPV 90 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + P S + +D+ +K +IV+S ND +A+AE + + + FV+ MN + Sbjct: 91 SERAWKMPGSRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENFVRLMNEQA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G Sbjct: 151 KALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKYFYPGTPASN 210 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRNTRNK 254 N N + DG+KTG T A+G+ +VA+A + + LI+++LGA N R Sbjct: 211 GTNRNSLLFRDPTVDGLKTGHTAAAGYCLVATAKRDLPNVGSRRLISIVLGAASENARAN 270 Query: 255 VSASLLSMGFYNKTDRKKIN 274 S LL+ G+ K + Sbjct: 271 ESQKLLNWGYAAFDSVKLFD 290 >gi|110802732|ref|YP_699090.1| penicillin-binding protein dacf precursor [Clostridium perfringens SM101] gi|110683233|gb|ABG86603.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101] Length = 402 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A ++ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFSIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKVMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ +N Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEIEQIPMNQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F N++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKNDLTLVCPKGMSDKIEKKVVLDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|310767134|gb|ADP12084.1| D-alanyl-D-alanine carboxypeptidase [Erwinia sp. Ejp617] Length = 402 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 8/273 (2%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K Sbjct: 33 MPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDL 92 Query: 80 ITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +T+ K+A S K G + + K ++++S ND ++A+A+ + ++ Sbjct: 93 VTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MNN + LGL THF HG+ G Y+TARDMA++ + D P + K Sbjct: 153 FVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKVF 212 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N N + T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA R Sbjct: 213 TFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAIR 272 Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + S LL+ G N + K F Q + Sbjct: 273 FRESEKLLTWGLRNFETVTPVKAG-KAFVTQRV 304 >gi|260892123|ref|YP_003238220.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex degensii KC4] gi|260864264|gb|ACX51370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex degensii KC4] Length = 392 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 15/275 (5%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR ++ + + + K L++ TG ++ P+ PAS TK Sbjct: 1 MRLGTAVIALIFVFFLGLGQAWAAPPEVKAEAAVLMEAETGQILYAKNPEERMYPASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++TA VV A L I S A S+ K+G +++ +AL L++ SAND Sbjct: 61 ILTALVVLQH-----ARLNDQIVASPEAVGTEGSSIWLKEGEKLSVKDALYALLLNSAND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +AVA+A+ + + F Q MN T++ G +++HF N HG+ HYTTA D+A ++ R+ Sbjct: 116 VAVALAQKVSGSIPAFAQLMNETARACGATSSHFTNPHGLPDPEHYTTALDLARIT-RVA 174 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + K P N N + + GA G+KTG+T A+G +VA+A Sbjct: 175 LGNRLFREIVATKTYTFHRPTLPEPFVLVNHNKLLWRYEGAIGVKTGYTTAAGQCLVAAA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + + LIAVIL + N + LL GF Sbjct: 235 QRNGRELIAVILKSEGTEVWN-DAVKLLDYGFNAF 268 >gi|148559912|ref|YP_001259847.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|148371169|gb|ABQ61148.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] Length = 352 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 185/310 (59%), Gaps = 7/310 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NAS+ PP Sbjct: 10 IAVDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASKEPP 69 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ LG+ +H Sbjct: 70 SKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMFGSH 129 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP-NTNWAVGT 209 F N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ GKK N N +G Sbjct: 130 FANPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNILLGR 189 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++ F ++ Sbjct: 190 YDGADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRARSS 249 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEK 325 + NL+ V ++ + +C+ Q ++ + E + K + H +D + Sbjct: 250 GGPTLATLHPAQTANLNQAV-DMRKAICSEQAMADRWDGREVEGRLKINSPYIHAMDHDP 308 Query: 326 ITLLKNKITK 335 I + +++ Sbjct: 309 IAVQVRLVSE 318 >gi|20807406|ref|NP_622577.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] gi|20515927|gb|AAM24181.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter tengcongensis MB4] Length = 416 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 159/352 (45%), Gaps = 44/352 (12%) Query: 16 IFPFLSI---AETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +F FLS+ AET + P L+D TG V+ + PAS TK++TA + Sbjct: 13 VFAFLSVPAHAETPQPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIALE 72 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 K L +T S+N ++ ++ G +TL+ L L+++SAND A+AIAE + Sbjct: 73 -----KGKLDDVVTCSENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEHI 127 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 + + F + MN ++ +G +HF+N +G+ HY+T DMA ++ R ++ Sbjct: 128 GGSVENFAKMMNEKAREIGAYNSHFVNPNGLPDENHYSTPYDMAQIA-RYAMQNAEFRKI 186 Query: 188 FQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGD 236 +I K + +N + + GADG+KTG+T A+G +VASA + Sbjct: 187 VSTLHYQIPPTNKFDKPRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDG 246 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--------------KINYIIKDFYQ 282 LI+VI+G N + LL GF N + K K + + Q Sbjct: 247 HRLISVIMGDEGINI-WTDTIKLLDYGFQNFSLVKVTQKDEVITSIELGKGGFKLPLIAQ 305 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 ++ EVP E T+ + + +A ++ + + K TL +I Sbjct: 306 KDFYYEVPKGKENSIKTEVVL----KEDIKAPIQKGEVLGYIKYTLDGKEIG 353 >gi|300022145|ref|YP_003754756.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299523966|gb|ADJ22435.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 583 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 96/270 (35%), Positives = 148/270 (54%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R+ + + + A + +LD N+G V+ + D +PASLTK+MT Sbjct: 3 RRAFAFALLCLAFSGAVPARAAAAPQKHAAFVLDVNSGAVLHNDDGDAIRHPASLTKMMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F ++ + ++ ITIS A+ PS K G+ +++ +++K ++ KSANDIAV Sbjct: 63 LYLTFELIESSRLKMSDMITISDRAANAAPSKLDLKPGAQISVADSIKAVVTKSANDIAV 122 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + TE FV+ MN +++LG++ THF N G+ H +TA DMAIL+ R+ DF Sbjct: 123 ALAEKIGGTEANFVRLMNTRARDLGMTKTHFENPSGLPDDDHVSTAHDMAILALRLMDDF 182 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + F + +GK Y N N + TF G DG+KTG+T ASGFN+V S +G + L+ Sbjct: 183 PAHYQVFSTRTFAYRGKSYRNHNTMLNTFQGVDGIKTGYTRASGFNLVTSVHRGGRHLVG 242 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRK 271 V+ G RN LL+ F + K Sbjct: 243 VVFGGSTAAARNAEMRVLLTKAFTRASTAK 272 >gi|168184531|ref|ZP_02619195.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|237795263|ref|YP_002862815.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4 str. 657] gi|182672360|gb|EDT84321.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|229263748|gb|ACQ54781.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4 str. 657] Length = 407 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 93/306 (30%), Positives = 145/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGGLDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D+AI+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDIAIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|320539093|ref|ZP_08038764.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Serratia symbiotica str. Tucson] gi|320030731|gb|EFW12739.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Serratia symbiotica str. Tucson] Length = 403 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 84/269 (31%), Positives = 130/269 (48%), Gaps = 8/269 (2%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K +T+ Sbjct: 42 PQIDAAAYILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGHTLKAGKIGQEDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 ++A S + G +++ + + ++S ND VA+A+ + ++ FV Sbjct: 102 QDAWATGNPVFKGSSLMFLRPGDRVSVAKLSRGINLQSGNDACVAMADYVAGSQDAFVNL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN LGL THF HG+ G Y++ARDMA++ + D P ++ K Sbjct: 162 MNTYVNKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNN 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + T L DG+KTG T A+G+N+VASA G LI+ +LG R S Sbjct: 222 IRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATAGQMRLISAVLGGRTYKGRETES 281 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 LL+ GF + + K+F + + Sbjct: 282 KKLLTWGFRFFETVAPL-KVGKEFASEPV 309 >gi|164688533|ref|ZP_02212561.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM 16795] gi|164602946|gb|EDQ96411.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM 16795] Length = 383 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 162/332 (48%), Gaps = 17/332 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++F+ + +L L A+ N K L+D +G V+ E PA Sbjct: 1 MKKFIGVFLAIILIISQSTLVFADKNGANLNLKCKSAVLMDVTSGKVLYEKNCHEKLPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT ++ ++ K LT +T+S+ AS S + T T+D LK + V Sbjct: 61 SVTKVMTMLLICEAVESNKIKLTDEVTVSETASSMGGSQIFLEPNETQTVDTLLKGIAVA 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND VA+AE + + + FV MNN +K LG+ T+F+N +G+ HYT+A D+A++S Sbjct: 121 SANDACVAMAEYIGGSIEGFVDMMNNKAKELGMKDTNFVNTNGLPVDNHYTSAYDIALMS 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + + GKK NTN + + GA G+KTGFT + + + Sbjct: 181 RELLKHEMIEKYLTTWMDKVVVGKKQATIGLANTNKMIKYYNGATGVKTGFTGEAKYCVS 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLS 286 ASA +G L++V+L R K +++LL GF N K + K + ++ S Sbjct: 241 ASAKRGKTHLVSVVLRGETSQERFKDASTLLDYGFANYESVKICSKDQKLYTLKMRKADS 300 Query: 287 NEVPNISEE---VCTTQKEIINYNTQMKEAKD 315 ++ ++++ + + E N+ ++K +D Sbjct: 301 EQIDLVAKDDLGILIKKGESKNFTKKIKVNED 332 >gi|18310788|ref|NP_562722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens str. 13] gi|110799537|ref|YP_696490.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|168214381|ref|ZP_02640006.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] gi|18145469|dbj|BAB81512.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens str. 13] gi|110674184|gb|ABG83171.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|170714156|gb|EDT26338.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] Length = 402 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ ++ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSDKIEKKVVLDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|171060904|ref|YP_001793253.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii SP-6] gi|170778349|gb|ACB36488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii SP-6] Length = 389 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 94/328 (28%), Positives = 153/328 (46%), Gaps = 19/328 (5%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + Y LLD + V+AE D PASLTKLMTAY+VF L++KK L Sbjct: 28 AQTAPPEVAARAYLLLDVSANQVLAERDADATVEPASLTKLMTAYLVFQALRDKKLALEQ 87 Query: 79 PITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 +T+S+ A S + G+ + +++ +K +IV+S ND V +AE++ T + FV Sbjct: 88 ELTVSERAWRTGMTDTSRMYIQVGTKVKVEDLIKGMIVQSGNDATVQLAEAVGGTLENFV 147 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN ++ GL T F N G+ GH +TAR+++I++ R+ DFP Y+ +K Sbjct: 148 VLMNRQAQAFGLKVTQFRNPEGLPAPGHVSTARELSIIASRLLVDFPAEARYYTLKEFTF 207 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG----DQSLIAVILGALDRNT 251 K PN N + DG+KTG+T +G+ ++A+A + + L++VILGA + + Sbjct: 208 NKIKQPNRNLLLWRDPTVDGLKTGYTDNAGYCLIATAKRDLPAGQRRLVSVILGASSKES 267 Query: 252 RNKVSASLLSMGFYNKTDRKKINYI---------IKDFYQQNLSNEVPNISEEVCTTQKE 302 R + LL+ G+ K + L VP + V + E Sbjct: 268 RATEAQKLLNWGYSAWDAIKLYDARQTITTAPVWKGASATAKLGTLVPLV---VTVPRGE 324 Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330 T++ + + + LK Sbjct: 325 GSQLKTEITRTDPLLAPLTAGQPVGTLK 352 >gi|169343702|ref|ZP_02864701.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] gi|169298262|gb|EDS80352.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] Length = 402 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK--------- 278 I A+A + +++VI+GA RN+ ++ L++ GF ++ I+ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDIEVEQIPMSQT 299 Query: 279 --DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSDKIEKKVILDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|260434140|ref|ZP_05788111.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157] gi|260417968|gb|EEX11227.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157] Length = 388 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 134/251 (53%), Gaps = 5/251 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++D TG V+ D P PAS++KLMT YV F L++ + L + +S+ Sbjct: 25 DTSARAAYVMDQTTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDEKLPVSE 84 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTS 142 +A Y S + +++ L+ +IV S ND V IAE+L TE F ++M + Sbjct: 85 HAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTQRA 144 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---K 199 K +G++ + F N++G GH + +D+AIL+ R+ TDFP+Y F + E G+ Sbjct: 145 KQMGMNNSTFANSNGWPAAGHMMSVKDLAILADRLITDFPEYYPLFAEETFEFDGRAPSN 204 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + +GADG+KTG T +G+ +V SA QGD+ +I V+ G + R + + ++ Sbjct: 205 VNNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVLSGLENVARRAEEAEAV 264 Query: 260 LSMGFYNKTDR 270 ++ F N +R Sbjct: 265 VNWSFRNFVER 275 >gi|168210830|ref|ZP_02636455.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] gi|170711096|gb|EDT23278.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] Length = 402 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ ++ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSEKIEKKVVLDESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|150396261|ref|YP_001326728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150027776|gb|ABR59893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 494 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 138/252 (54%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 I +A L + + A N ++D TG V+ D PASLTK+MT Y+ F Sbjct: 31 IFLAGLIVVLTLSAPALANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+AE L Sbjct: 91 ALEAGRINKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDSATALAELL 150 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + N N +G G DG+KTG+T ASGFN+V SA G +S++AV++G Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLGGRSIVAVVMGGT 270 Query: 248 DRNTRNKVSASL 259 +R+ L Sbjct: 271 SGGSRDAQMRKL 282 >gi|110680629|ref|YP_683636.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh 114] gi|109456745|gb|ABG32950.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh 114] Length = 389 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 10/290 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 I+ A + + A + ++D TG V+ D P PAS++KLMT Y+ Sbjct: 2 FRILLAAFVLVASTLTAAAFETRASAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLYM 61 Query: 65 VFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 F ++ K L + +S++A Y S+ + G T+++++ L+ +IV S ND Sbjct: 62 AFEAVRRGKADGGLDLNERLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDAC 121 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 V IAE+L TE F + M ++ LG++ + F+NA G Q GH + RD+AIL+ R+ Sbjct: 122 VVIAEALSPDGTEYGFARMMTQRAQQLGMNNSVFINASGWPQTGHVMSMRDLAILADRLI 181 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TDFP++ F + N N + +GADG+KTG T +G+ +V SA QG Sbjct: 182 TDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 D+ +I VI G R + S ++++ F R I ++F + ++ Sbjct: 242 DRRIIFVITGLETTAARAQESQAIVNWAFRQFAMR-DIGKAGQEFAKADV 290 >gi|258516321|ref|YP_003192543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257780026|gb|ACV63920.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 373 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 29/340 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M + L + + P + + L+D +G V+ + PAS TK+ Sbjct: 5 MLRVLPFFLLLLNVYCLPVQAAYSPPVAAESAVLMDVGSGQVLYQKNAFQRRPPASTTKI 64 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 +TA + L +TISK A+ S+ + G +TL+ + ++KS ND Sbjct: 65 LTALLALE-----GGDLGQVVTISKTAASTGESSIYLQAGENLTLEELIYGALLKSGNDS 119 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VAIAE + TE FVQ MN +K +G +HF+N +G+ GHY+TA D+A L+ Sbjct: 120 CVAIAEQIAGTEANFVQLMNEKAKQMGAMDSHFVNCNGLPAEGHYSTAYDLAKLTCYALQ 179 Query: 180 DFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + + I+G + NTN + T+ ADG+KTG T A+G +VASA + Sbjct: 180 -NPVFNTVVSTREKVIRGPGWQRHLQNTNQLLDTYTFADGVKTGTTNAAGPCLVASATRD 238 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFY------------ 281 ++ L++V+L + + R S SLL GF N ++ K + +I D Sbjct: 239 NRRLVSVVLHSAN---RYGDSKSLLEYGFNNFSNNKVLTAGQVIGDIPVCDGFSPAVQAV 295 Query: 282 -QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320 + +L+ +PN ++ + +++ T + + K Sbjct: 296 SKGDLTVVIPNGRTDLIEKKIYLVDGLTAPVKKEQKIGRV 335 >gi|255524154|ref|ZP_05391114.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296186612|ref|ZP_06855014.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium carboxidivorans P7] gi|255512139|gb|EET88419.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|296048649|gb|EFG88081.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium carboxidivorans P7] Length = 398 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 7/264 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 L++ + G +I E PAS+TK+MT + + K L+ +TIS+NA Sbjct: 46 DAKSALLMEPSNGKIIYEKNCHEKLAPASVTKVMTMLLTMENVDSGKIKLSDKVTISENA 105 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S+ G T++ +K + + S ND AVA+AE L +E+ FV+ MN + LG Sbjct: 106 KKMGGSSMLLDTGEVRTVEELIKGIGIASGNDAAVAMAEYLGGSEEGFVKLMNERAHKLG 165 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP---- 201 + T+F N G+ GH TTA D+AI+S + P + Y I +G+K P Sbjct: 166 MKDTNFNNCTGLSSPGHVTTAYDIAIMSRELLK-HPDILKYTGTYMETISEGRKSPIGLV 224 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V F G DG+KTGFT + + I A+A + ++AVI+G+ RNK ++ L++ Sbjct: 225 NHNKLVRFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGSPTYKVRNKDASMLMN 284 Query: 262 MGFYNKTDRKKINYIIKDFYQQNL 285 GF ++K I KD + NL Sbjct: 285 YGFSKYENKKLIEKG-KDVEKVNL 307 >gi|168180436|ref|ZP_02615100.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] gi|226949102|ref|YP_002804193.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] gi|182668867|gb|EDT80845.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC 2916] gi|226842614|gb|ACO85280.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2 str. Kyoto] Length = 407 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 93/306 (30%), Positives = 145/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D+AI+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDIAIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|311068945|ref|YP_003973868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310869462|gb|ADP32937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 389 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 10/321 (3%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L++ +TG V+ PAS+TK+MT ++ L + K ++ + S+ Sbjct: 34 AHEAKSAVLIERDTGKVLYNKNSHERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSE 93 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S + G MT+ LK + + S ND +VA+AE + +E++FVQ MN +K Sbjct: 94 YAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDSSVAMAEYISGSEEEFVQKMNKKAKE 153 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKK 199 LGL T F N G+ + GHY++A DMA++S + + + + + K Sbjct: 154 LGLKDTTFKNPTGLPEKGHYSSAYDMAMMSKELLK-YDKITAFTGTYEDYLREDTDKKFW 212 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN + Sbjct: 213 LVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQVTKM 272 Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKD 315 L F + + I SE + K+ + KE K Sbjct: 273 LDYAFSQYETHPMYKRNETVAKAKVKKGKQKTIELSTSEPISLLTKKGEDTKHVKKEIKM 332 Query: 316 KESHFIDFEKITLLKNKITKK 336 KE +K +L I KK Sbjct: 333 KEQITAPIKKGDVLGTLILKK 353 >gi|218676325|ref|YP_002395144.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus LGP32] gi|218324593|emb|CAV26124.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus LGP32] Length = 394 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 18/287 (6%) Query: 1 MRQF----LVIIAMAMLSN--IFPFLSIAETNKLPY--------YTLLDTNTGHVIAENY 46 M++F L +++M ++SN I ++A + +P Y L+D N+G V+ E Sbjct: 1 MKRFSKYSLPLLSMFIVSNAAIVANTAVAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKN 60 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMT 103 NPASLTKLMT+YV +K + IS+NA S + + + Sbjct: 61 AHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVA 120 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + + + LI++S ND +VAIAE + ++ FV MN+ + +L L THF NAHG+ Sbjct: 121 MMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDL 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTC 222 Y+T D+A+L I D P + + N N + L DGMKTG+T Sbjct: 181 YSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTGYTS 240 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +G+++ +SA QG+ LIAV++GA +R S LLS GF Sbjct: 241 GAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGFRFFDT 287 >gi|83855085|ref|ZP_00948615.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. NAS-14.1] gi|83842928|gb|EAP82095.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter sp. NAS-14.1] Length = 473 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 152/295 (51%), Gaps = 4/295 (1%) Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 PY ++D TG V+ D +PASLTK+MT Y+ F +K + L + + I+ + Sbjct: 2 AAPYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIKRGEISLDSKVKITSH 61 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ PPS K G T+ L ++ VKSAND A AI E++ +E KF + MN T+K L Sbjct: 62 AASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKAL 121 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204 G++ T F NAHG+ + GH +TA DM I+ + D P+Y + F + +K +TN Sbjct: 122 GMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYNLFSRITADAGVRKVSHTNR 181 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + ++ GADG+KTG+T A+GFN+ ASA +G++ +I + G + RN A L+ +GF Sbjct: 182 RFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGTSTSARNAKVAELMDLGF 241 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319 + K Y + P S+ ++ T K + H Sbjct: 242 RRAPSSAPLKKPSKPAYAD--VEDTPVASDGAAGKVIRLVGAVTTSKRPTLRPGH 294 >gi|182416858|ref|ZP_02948244.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237669065|ref|ZP_04529049.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379320|gb|EDT76819.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237657413|gb|EEP54969.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 461 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 18/331 (5%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + + + L++ TG +I E D + PAS+TK+MT + + K L + Sbjct: 96 AESNEIEARSALLMEPCTGKIIYEKNADEKFAPASVTKIMTMLLTIEAVDSGKIALDDKV 155 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 T S+NA + S G T++ LK + + S ND AVA+AE L TE FV MN Sbjct: 156 TCSENAKKMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTENDFVGMMNK 215 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKK 199 ++ LG++ T F N +G+ GH +TA D+A +S + P + Y I +G+K Sbjct: 216 RAEELGMTNTTFKNCNGLPADGHLSTANDIAKMSKELLK-HPTILKYTGTYMDTITEGRK 274 Query: 200 YP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 P N N V F G DG+KTGFT + + I A+A + +++VI+GA RN+ Sbjct: 275 SPIELVNHNKLVRFFDGCDGLKTGFTNEAKYCISATATRNGVRMLSVIMGAPTYKIRNRD 334 Query: 256 SASLLSMGFYNKTDRKK-----------INYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 ++ LL+ GF +K ++ ++ +++ + + C + E Sbjct: 335 ASILLNYGFSKYEGKKIFSKDEEVDKVYMDEQTDRYFMAKAQDDLTAVLPKGCKDEVEKK 394 Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++++ + KE + +I L KI + Sbjct: 395 VVIDELQK-EYKEGDVVGKCEIYLNNEKIGE 424 >gi|168215435|ref|ZP_02641060.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] gi|182382426|gb|EDT79905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] Length = 402 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++++ I A A+ ++F +S A + L++ +TG +I E + + Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K + Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFN 227 +S + P + Y I +G+K P N N V F G DG+KTGFT + + Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----------KINYI 276 I A+A + +++VI+GA RN+ ++ L++ GF ++ ++ Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299 Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 F +++ + + + + E + K+ K KE I + + L + K Sbjct: 300 GDKFIIGKAKDDLTLVCPKGMSDKIEKKVVLYESKK-KIKEFDTIGYCEYYLDGELLGK 357 >gi|159184788|ref|NP_354511.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58] gi|159140076|gb|AAK87296.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58] Length = 499 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 87/259 (33%), Positives = 138/259 (53%), Gaps = 2/259 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F+ +A+ + + S+ P Y ++D +G V+ PD PASLTK+M Sbjct: 24 SFVRFVALTLAAAFIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMM 83 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + L + +T+S NA++ PPS + G ++T++ A+ L+ +SAND+A Sbjct: 84 TLYLTFEALNSGRISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMA 143 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ Sbjct: 144 TALGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 203 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY YF + + N N VGT G DG+KTG+T A+G N+ SA +S++ Sbjct: 204 FPQYYGYFSTRTFNFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIV 263 Query: 241 AVILGALDRNTRNKVSASL 259 AV+LG R+ L Sbjct: 264 AVVLGGRSSAARDATMRKL 282 >gi|322833272|ref|YP_004213299.1| Beta-lactamase [Rahnella sp. Y9602] gi|321168473|gb|ADW74172.1| Beta-lactamase [Rahnella sp. Y9602] Length = 403 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 8/262 (3%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +A + L+D N+G ++ E+ PD +PASL+K+M +YVV +K K Sbjct: 32 APVAPQINAKSWVLMDYNSGKILTESNPDARLDPASLSKIMVSYVVGQAIKSGKIKSDDL 91 Query: 80 ITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 +++ +A S K G + + K ++++S ND ++A+A+ + ++ Sbjct: 92 VSVGNDAWATGNPVLRGSSLMFLKPGDRVPVSELNKGIVIQSGNDASIALADFVAGSQDS 151 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN ++ L L THF HG+ G YT+A DMA+LS + D P + K Sbjct: 152 FVNLMNRYAEQLKLQNTHFKTVHGLDADGQYTSATDMALLSQALIRDTPDEYALHKEKEF 211 Query: 194 EIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNT 251 K N N + + L DG+KTG+T +G+N+V+SA LIAV++GA Sbjct: 212 TFNHIKQINRNRLLWSSNLNVDGIKTGYTSGAGYNLVSSASDSTGMRLIAVVMGAPSDRI 271 Query: 252 RNKVSASLLSMGFYNKTDRKKI 273 R S SLL+ GF I Sbjct: 272 RFNESESLLTWGFRFYETLTPI 293 >gi|323136415|ref|ZP_08071497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] gi|322398489|gb|EFY01009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] Length = 592 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 143/262 (54%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D N+G + +PAS+TK+MT Y++F L++ K L +P+ IS +A+ Sbjct: 90 AAIVVDGNSGKTLYARNEHELRHPASVTKVMTLYLLFEQLEKGKLRLDSPLMISSHAAAQ 149 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PS + G T++++NA+K ++ KSANDIA AIAE++ E F Q M + LG+ Sbjct: 150 APSKLGLRPGETISVENAIKAVVTKSANDIACAIAENIGGDEHTFAQMMTRKAHALGMRN 209 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH+ NA G+ G TTA D+A+L I+ FP+Y YF G + N N +G Sbjct: 210 THYENASGLPDPGQITTAYDLAVLGRAIQDRFPRYYRYFSTHSFAYNGALHRNHNHLLGQ 269 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G DG+KTG+T ASGFN++ S +G+ ++AV++G R+++ A L+ Sbjct: 270 VEGMDGIKTGYTRASGFNLLTSVRRGNHHIVAVVMGGATAGGRDRIMAGLIEDNIGGGAS 329 Query: 270 RKKINYIIKDFYQQNLSNEVPN 291 + I +D + L+ E P Sbjct: 330 IRTAAAITEDSAAEQLAEESPV 351 >gi|303238725|ref|ZP_07325258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] gi|302593844|gb|EFL63559.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio cellulolyticus CD2] Length = 399 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 12/296 (4%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S + ++D +G V+ E + AS TK+MTA V K L + Sbjct: 47 SKTPKIEAGAAIVIDMKSGRVLYEKNAYSTRSIASTTKIMTAIVAIE-----KGKLDNKV 101 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 +SK A+ S K+G ++L L L++ S ND A+AIAE + + ++F Q MN+ Sbjct: 102 KVSKRAASVRGSVIHLKEGEELSLRELLYGLMLNSGNDAAIAIAEHIGGSVEEFAQMMND 161 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL T F HG+ GHY+TA ++A ++ R + + I G+ Sbjct: 162 KARELGLKNTQFKTPHGLDTPGHYSTAYELAQIA-RYALGNSTFSQIVGTQSTSITGRSL 220 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 TN +G + GADG+KTG+T +G +VASA + + +I+V+L R+ R + S ++L Sbjct: 221 YTTNEMLGAYPGADGVKTGYTGQAGRCLVASATRNNMRIISVVLNCHSRSVRAQSSKAIL 280 Query: 261 SMGFYNK------TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 F N + + + + + +P EV T++E + ++ Sbjct: 281 DYAFNNYKLYKLLDSEENVGKLPVVKGKGEIVPIIPVEGLEVALTEEEKNSLKEEL 336 >gi|170757721|ref|YP_001781407.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str. Okra] gi|169122933|gb|ACA46769.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1 str. Okra] Length = 407 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|253578836|ref|ZP_04856107.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849779|gb|EES77738.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 88/294 (29%), Positives = 149/294 (50%), Gaps = 28/294 (9%) Query: 1 MRQFLVIIAMAMLSNI----FPFLSI---------------AETNKLPYYTLLDTNTGHV 41 MR+ + I A+L + P + + + P L++ TG V Sbjct: 1 MRKKWISIICAILIMVCTITTPVYAAGIFLPEESNTRQAESTDLIEAPSGILMEAQTGTV 60 Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101 + + D +PAS+TK+MT ++F L + + +T S +A S ++G Sbjct: 61 VYQKDADTRRSPASITKIMTLILIFDALDKGSLKMDDTVTTSAHAKSMGGSQVFLEEGEI 120 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ- 160 T++ +K +++ S ND +VA+AE +C +E++FV+HMN ++ LG+ THF + G+ + Sbjct: 121 QTVETLIKCIVIASGNDASVAMAEHICGSEQEFVRHMNERAEGLGMKNTHFEDCCGLTES 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLG 212 HYTTARD+AI+S + T +P+ + Y I I NTN + ++ G Sbjct: 181 PDHYTTARDIAIMSRELITKYPKILEYSSIWMENITHVTRQGTKEFGLTNTNKLIRSYEG 240 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G+KTG T + + + A A + D +LIAV++ A D R K +AS+L+ GF Sbjct: 241 CVGLKTGSTSIAKYCLSAVAKRNDITLIAVVMAAPDYKVRFKDAASMLNYGFSK 294 >gi|207727766|ref|YP_002256160.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum MolK2] gi|206591007|emb|CAQ56619.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum MolK2] Length = 398 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 130/259 (50%), Gaps = 9/259 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L D +G V+ D PASLTKLMTAY+ F +++ K IT Sbjct: 37 APQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITP 96 Query: 83 SKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 +++ + S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN Sbjct: 97 TESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNR 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K Sbjct: 157 EAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRN 253 PN N + DG KTG T ++G+ +V SA + + L++VI+G R Sbjct: 217 PNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRT 276 Query: 254 KVSASLLSMGFYNKTDRKK 272 + S +L+ G+ + Sbjct: 277 QESLKVLNYGYQFFDTLRL 295 >gi|260892753|ref|YP_003238850.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] gi|260864894|gb|ACX52000.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] Length = 381 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 8/275 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ + + + ++ S A + L++ + G ++ E AS Sbjct: 1 MRRKALFLTTLLAFSLLVANSRACASPFLSTTAKSAVLMEAHHGQILGEKELHRKQPIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 + KLMT + +++ K L +T S++A+ S M+ + L + S Sbjct: 61 MVKLMTLLLAVEAVEQGKVRLADKVTASEHAASMGGSQIFLAPEEVMSFRDLLIAVATAS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND +VA+AE + +E+ FV MN ++ LG+ TH++NA G+ G Y+TA D A+L Sbjct: 121 ANDASVAVAEHVAGSEEAFVAAMNAKARALGMENTHYVNATGLPAEGQYSTAYDQALLLR 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 P ++ QIK ++G K+ NTN + + G KTG+T +G+ + ++A Sbjct: 181 EALK-HPLFLELAQIKEYSLRGGKFKLYNTNKLLWWYRGTIAGKTGWTEEAGYCLASAAK 239 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + +LI V+LG + + + S + + GF Sbjct: 240 RQGLTLITVVLGCPEPRSHFRESIKIYNWGFARYQ 274 >gi|296447596|ref|ZP_06889517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296254911|gb|EFH02017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 448 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 12/307 (3%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G ++ + P W PASLTKLMT YV ++ + TP+ +S A+ P Sbjct: 28 VVIDVASGQILEQEQPTQSWYPASLTKLMTVYVALDAVRSGRLSYDTPLVVSPRATSMAP 87 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S F GS +TL NAL +L+VKSAND+AV IAE + + + F MN S LG+ ++ Sbjct: 88 SKMGFPPGSEVTLRNALVMLMVKSANDVAVTIAEGVSGSVEAFADEMNRASARLGMRESY 147 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++N +G+ T+ARD+A+L + +FP+ ++ I ++ + +P N +G + Sbjct: 148 WVNPNGLPDDRQVTSARDLALLGRALLVEFPESAGFYNIGAMKFGSQIHPTHNGLLGRYP 207 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTGFTC +G+N+VASA G Q LIAV+LGA R +ASLL F + + Sbjct: 208 GADGMKTGFTCPAGYNLVASATHGGQKLIAVVLGAPSGAARTAKAASLLDKAFTSGSPAG 267 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQ-KEIINYNTQMKEA------KDKESHFIDFE 324 + + P++ + VC + K Y +++E ++ E+ +D + Sbjct: 268 ALAALPSSGV-----APAPDMRDSVCHHRGKASAEYMAEVEEMTIAIPHENGETEAVDVK 322 Query: 325 KITLLKN 331 I L Sbjct: 323 AIAQLPR 329 >gi|217977547|ref|YP_002361694.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502923|gb|ACK50332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 536 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 112/289 (38%), Positives = 167/289 (57%), Gaps = 7/289 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L+D +G V+ E++ PW PASLTKLMT YV +++ + L TP+ +S+ Sbjct: 42 AEAAPS-LLMDLASGAVLYEDHATQPWFPASLTKLMTVYVALQAVRDHRISLDTPLVVSR 100 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ PPS F+ G+ +TLD ALK+L+VKSAND++V +AE + + + F MN T+ Sbjct: 101 RAAAMPPSKMGFRPGTMVTLDTALKILMVKSANDVSVTVAEGVSGSVEAFAAEMNATAAA 160 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+ +HF+N +G+ HY++ARD+A+L+ + FP++ F I LEI G+ N N Sbjct: 161 LGMQQSHFVNPNGLPDPQHYSSARDLALLARALYVTFPEHADLFSIGALEIGGRVMANHN 220 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G + G DGMKTGFTCA+GFN+VASA QG + L+AVILGA + R +A+L GF Sbjct: 221 NLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLVAVILGAPNVALRTVKAAALFDRGF 280 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI-INYNTQMKE 312 DR I P+ VC ++ + +N + + Sbjct: 281 A-GIDRPSIQVAALPLQ----GGAPPDNGASVCRSRGAAMVAFNAENER 324 >gi|148379819|ref|YP_001254360.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|153934177|ref|YP_001384117.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|153937458|ref|YP_001387657.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. Hall] gi|148289303|emb|CAL83399.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|152930221|gb|ABS35721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. ATCC 19397] gi|152933372|gb|ABS38871.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A str. Hall] Length = 407 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|225626417|ref|ZP_03784456.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo] gi|260169446|ref|ZP_05756257.1| cobalamin synthesis protein P47K [Brucella sp. F5/99] gi|225618074|gb|EEH15117.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo] Length = 635 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 7/303 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+ + +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVFAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+ Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296 Query: 299 TQK 301 Q Sbjct: 297 EQA 299 >gi|83746894|ref|ZP_00943941.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551] gi|207742170|ref|YP_002258562.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum IPO1609] gi|83726479|gb|EAP73610.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551] gi|206593558|emb|CAQ60485.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase) [Ralstonia solanacearum IPO1609] Length = 398 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 130/259 (50%), Gaps = 9/259 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L D +G V+ D PASLTKLMTAY+ F +++ K IT Sbjct: 37 APQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITP 96 Query: 83 SKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 +++ + S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN Sbjct: 97 TESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNR 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K Sbjct: 157 EAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRN 253 PN N + DG KTG T ++G+ +V SA + + L++VI+G R Sbjct: 217 PNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRT 276 Query: 254 KVSASLLSMGFYNKTDRKK 272 + S +L+ G+ + Sbjct: 277 QESLKVLNYGYQFFDTLRL 295 >gi|114762661|ref|ZP_01442095.1| D-alanyl-D-alanine carboxypeptidase [Pelagibaca bermudensis HTCC2601] gi|114544571|gb|EAU47577.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. HTCC2601] Length = 391 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + A +LD TG V+ D PAS++KLMT Y+ F +++ + L Sbjct: 22 TQAGAFDTSARAAFVLDYTTGTVLMAKNADEALPPASMSKLMTLYMAFEAVRDGRLQLDE 81 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQ 136 + +S++A Y S + +++ L+ +IV S ND IAE+L TE F + Sbjct: 82 RLPVSQHAMSYGGSTMFLNTTDRVAVEDLLRGIIVLSGNDACAVIAEALSPNGTEAGFAE 141 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M ++ LG++ + F NA G H + RD+ +L+ RI DFP++ F + E Sbjct: 142 LMTRRAQQLGMTNSTFENASGWPAPNHRMSVRDLTLLATRIIEDFPEFYPIFAERRFEFD 201 Query: 197 GK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G+ N N + +GADG+KTG T +G+ +V SA Q + +I I G R Sbjct: 202 GRAPSNVNNRNPLLRLDIGADGLKTGHTQEAGYGLVGSAEQDGRRVIFTISGLDSERARA 261 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNISEEVCT 298 + + S+++ F +R + + + V ++EE T Sbjct: 262 EEAESIVNWAFRQFAERTLVEQGTAVAQAEVWLGAEDSVGLVAEEDVT 309 >gi|289578077|ref|YP_003476704.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|297544350|ref|YP_003676652.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527790|gb|ADD02142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter italicus Ab9] gi|296842125|gb|ADH60641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 417 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + + + + A P L+D TG V+ + PAS Sbjct: 1 MKKMVASLLILFILVVQITPVYANVPSPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L ++++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAIMLES 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYNSHFVNPNGLPDENHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG+T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----------- 273 G + ASA + + LI+VI+G N + LL GF N + KK Sbjct: 235 GQVLAASATREGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGEVVTYIDL 293 Query: 274 ---NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ + +++ EVP E TQ I N +K +K + + K TL Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKNIKAPINK-GDILGYIKYTLNG 349 Query: 331 NKIT 334 +I Sbjct: 350 KEIG 353 >gi|197303542|ref|ZP_03168581.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC 29176] gi|197297540|gb|EDY32101.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC 29176] Length = 402 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 132/250 (52%), Gaps = 8/250 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A P L++ TG V+ E D PAS+TK+MT ++F L E K L +T Sbjct: 44 AVEVTAPSAILMEMTTGTVLYEKDADTARPPASVTKVMTMLLIFDALAEGKIQLEDEVTT 103 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ AS S + G T++ LK + V SAND VA+AE + E++FV+ MN + Sbjct: 104 SEYASSMGGSQVFLETGEKQTVETLLKCISVASANDACVAMAEYISGNEEEFVRQMNLRA 163 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 + LG+ THF+N +G+ GH T+ARD+A++S + +P+ +Y I I Sbjct: 164 EGLGMKHTHFVNCNGLDAEGHETSARDIALMSRELLLKYPEIHNYCTIWMENITHTTSKG 223 Query: 200 -----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 NTN + + A G+KTG T + F + A+A + SLIAVI+GA D R K Sbjct: 224 SSEFGLTNTNKLIRQYEYATGLKTGSTGKAKFCVSATAEKNGVSLIAVIMGAEDSKARFK 283 Query: 255 VSASLLSMGF 264 + +LL+ GF Sbjct: 284 DAVTLLNYGF 293 >gi|325265494|ref|ZP_08132216.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] gi|324029273|gb|EGB90566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5] Length = 423 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 159/336 (47%), Gaps = 19/336 (5%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + P L++ +TG VI E D PAS+TK+MT ++F L + K L Sbjct: 61 TQTAGPEVSAPSAVLMEASTGEVIFEKDADTARPPASVTKIMTMLLIFDALADGKIKLED 120 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T S+ A+ S + G T T+D LK + V SAND VA+AE +C E++FV+ M Sbjct: 121 QVTTSEFAASMGGSQVFLEPGETQTVDTMLKCISVASANDACVAMAEYICGNEEEFVKQM 180 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N +K LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I Sbjct: 181 NERAKGLGMENTHFVNCNGLDVDGHVTTARDIALMSREMITKYPQIHDYCMIWMENITHT 240 Query: 199 K--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 NTN V + A G+KTG T + F + A+A + D +IAVI+ A D Sbjct: 241 TKKGTTEFGLTNTNKLVRQYEYATGLKTGSTGLAKFCVSATAKKNDIEMIAVIMAAGDSK 300 Query: 251 TRNKVSASLLSMGF------YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 R K + +LL+ GF +++ K + +K + + E + + T+ + Sbjct: 301 ARFKDATTLLNYGFGKCQVYKDESPEKLKDLEVKGGVEDTVHCEYADSFSYLDTSGANLS 360 Query: 305 NYNTQMKEAKD-----KESHFIDFEKITLLKNKITK 335 ++K K K+ L +I K Sbjct: 361 GITKKLKVKKSLDAPLKKGDKAGSLIYELDGKEIGK 396 >gi|167585315|ref|ZP_02377703.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ubonensis Bu] Length = 438 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 151/329 (45%), Gaps = 15/329 (4%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + L+D + V+A D PASLTKLMTAY+VF L +KK + Sbjct: 70 MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 129 Query: 77 TTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S S + +++ + + +I++S ND A+A+AE + +E +F Sbjct: 130 EQIVTPSAAVRRVGTDESRMFIEADKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 189 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN+ +K LG+ THF + +G+ HYTTA D+A LS + DFPQY F K + Sbjct: 190 VNMMNDEAKRLGMKGTHFADVNGMPDPNHYTTAGDLATLSAHLIRDFPQYYGIFSEKEFK 249 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247 + N N + DG+KTG T A+GF +++SA + + L++V++G Sbjct: 250 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRQMPGTADAPRRLVSVMMGET 309 Query: 248 DRNTRNKVSASLLSMGFYNKTDRK--KINYII--KDFYQQNLSNEVPNISEE--VCTTQK 301 + R + S +L+ G+ + K I Y+ +N + + V + Sbjct: 310 KESDRTQDSMKMLNYGYSAFDAVRLFKGGQAISTPRLYKGKSNNVQVGVKGDQWVTVPRG 369 Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLK 330 T+++ + D + + +K Sbjct: 370 LGDKVKTEVEVNAPLIAPLADGQPVGTVK 398 >gi|332981537|ref|YP_004462978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699215|gb|AEE96156.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 380 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 141/280 (50%), Gaps = 20/280 (7%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ FL+I + M + ++A +++ TG V+ D Sbjct: 1 MKRAVIFLLIFCVFMSPCLMISKALAVEDPPQISASVAAVMEVETGRVLYGKDADKRCPM 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA L+ + +S NAS S+ + G +TL++ L L++ Sbjct: 61 ASTTKIMTAITAIEC-----GDLSDIVEVSDNASGVEGSSIWLEVGERLTLEDLLYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND AVAIAE + + +KFV MNN +K +G THF+N HG+ HYTTA D+A++ Sbjct: 116 RSGNDAAVAIAEHIGGSVEKFVDMMNNKAKEIGARNTHFVNPHGLPDEDHYTTAYDLALI 175 Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ +K + + + + + +G ++ N N + + GA+G+KTG+T +G + Sbjct: 176 TAYAMKNPVFKQIVSTKYRKIPWEGHEWDRAMQNKNKLLWKYEGANGVKTGYTKEAGRCL 235 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 VA+A + L+AV+L + S +LL GF N + Sbjct: 236 VAAAYRNGMQLVAVVLN---DGPMWEDSMALLDYGFDNFS 272 >gi|297544605|ref|YP_003676907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842380|gb|ADH60896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 382 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 155/355 (43%), Gaps = 31/355 (8%) Query: 1 MRQFL--VIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++F+ + I + +S++ + S + ++D TG V+ E AS T Sbjct: 1 MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT V K L +T+SK A+ S+ G + +++ L L++ S N Sbjct: 61 KIMTLLVALE-----KGNLKDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSW 175 D A AIAE + + + F + MN +K +G THF G+ HYTTA D+A+++ Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFATPSGLDIGIDDHYTTAYDLALITR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 +P++ K I + N N + + GADG+KTGFT +G +V Sbjct: 176 YAFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLS 286 +SA + + IAV+L + + S +L F + + I K + Sbjct: 235 SSATREGRRFIAVVLNSPPM---WEDSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291 Query: 287 NEVPNISEEVC-----TTQKEIINYN---TQMKEAKDKESHFIDFEKITLLKNKI 333 N + +SE C +K+ ++ + EA ++ I + + + + KI Sbjct: 292 NSISVVSETECIIPASEEEKQKVSLEFHLPESVEAPIEKGERIGYVTVKIGEEKI 346 >gi|121602162|ref|YP_988381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella bacilliformis KC583] gi|120614339|gb|ABM44940.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella bacilliformis KC583] Length = 362 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 187/315 (59%), Gaps = 9/315 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ + ++ ++ L++A + +D G ++ N W PASLTKLM Sbjct: 1 MRKLFYKFFLFLVLSMMSRLALAHP-----FISVDLANGRILEHNQAFERWYPASLTKLM 55 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 AY+VF + + T ITISK A++ PP S++K G T+TLD AL + +VKSAND+A Sbjct: 56 MAYIVFRAMSTGEISPNTSITISKAAAQAPPHRSSYKTGYTITLDAALSITLVKSANDLA 115 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AI+E++ ++K FV+ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ + Sbjct: 116 IAISEAIAGSQKAFVKQMNAHAQRLGMFGTHFANASGLPDLNNYSTARDIALLAVQIRRE 175 Query: 181 FPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFNIVASA + +++ Sbjct: 176 FPQYTHYFSIPAIDFGDNQKIQYNSNKLIGRFDGIDGMKTGFICASGFNIVASATRNNRT 235 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 +IAVILGA + + R +A LL GF K ++ + + ++ ++ +++CT Sbjct: 236 IIAVILGAENIDEREAKAAELLHEGFTKKGSPTSTLATLEPYGTK--ITQITDMRQQICT 293 Query: 299 TQKEIINYNTQMKEA 313 + I ++ E Sbjct: 294 PEAGNIRRSSYDTEG 308 >gi|316934064|ref|YP_004109046.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315601778|gb|ADU44313.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 413 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 18/287 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------NKLPYYTLLDTNTGHVIAENYPD 48 MR L + +A+ P + ++ + P LLD +G V+ E D Sbjct: 15 MRGLLAGL-IAVALGAGPATAANQSVQGAKKEEGGFEAQAPTAILLDAESGSVLFEKNAD 73 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMT 103 P+S+ KLMT VVF LK L +S+N+ Y S + S+++ Sbjct: 74 ELRAPSSMMKLMTVEVVFHLLKTGALQLAQEYRVSENSWRYGGAPAGGSTMFAEIHSSIS 133 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 +DN L+ I++S ND + +AE + +E FV+ M ++ LGL+ + F N+ G+ + Sbjct: 134 VDNLLRGAIIQSGNDSCMVLAEGIAGSEAAFVERMTKRARELGLTQSTFGNSTGLPNPDN 193 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 + R++A L+ I +P F K + N N + GADG KTGFT Sbjct: 194 KMSVRELARLARHIILTYPDMYALFGEKEFTWNKIRQTNRNPLLNALPGADGFKTGFTKE 253 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 G+ +V SA+Q LI V+ G + R + LL GF N R Sbjct: 254 GGYGLVGSAVQNGMRLIVVVNGLESADDRASEAKKLLEWGFRNFESR 300 >gi|114799142|ref|YP_759747.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] gi|114739316|gb|ABI77441.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] Length = 442 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 3/259 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++++ + + + AE ++D ++G V+ D P PASLTK+MT Y++ Sbjct: 15 IAASVSITAAVMAPSAHAEKY---AAIVVDADSGEVLHARNQDDPRYPASLTKVMTLYLL 71 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F + L I +S+NA+ PPSN + G T+T+++A+ L KSAND+A A+AE Sbjct: 72 FDAIDAGDVSLKDKIKVSRNAAAQPPSNLRLRAGDTITVEDAIYALTTKSANDVAAAVAE 131 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E+KF M + +++LGLS T F NA G+ +TARD+AIL+ + + Y Sbjct: 132 FLGGSERKFAAMMTDKARDLGLSNTTFRNASGLPDTAQLSTARDLAILADALLDNHEPYY 191 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 HYFQ + G Y + N +G+ G DG+KTG+T ASGFN++ SA + + +IA++LG Sbjct: 192 HYFQNQRFSWGGMTYKSHNNLIGSVDGVDGIKTGYTRASGFNLMTSAERDGRRVIAIVLG 251 Query: 246 ALDRNTRNKVSASLLSMGF 264 +R+ L+ F Sbjct: 252 GASAKSRDAHVTELVESAF 270 >gi|300705317|ref|YP_003746920.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum CFBP2957] gi|299072981|emb|CBJ44338.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum CFBP2957] Length = 398 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 129/259 (49%), Gaps = 9/259 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L D +G V+ D PASLTKLMTAY+ F +++ K IT Sbjct: 37 APQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITP 96 Query: 83 SKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 ++ + S + G +++ L+ LIV+S ND A+ +AE++ TE FV MN Sbjct: 97 TETVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNR 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K K Sbjct: 157 EAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRN 253 PN N + DG KTG T ++G+ +V SA + + L++VI+G R Sbjct: 217 PNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRT 276 Query: 254 KVSASLLSMGFYNKTDRKK 272 + S +L+ G+ + Sbjct: 277 QESLKVLNYGYQFFDTLRL 295 >gi|153940158|ref|YP_001391119.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str. Langeland] gi|152936054|gb|ABS41552.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F str. Langeland] Length = 407 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKREEKAEDKDSNKEGGLDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSVEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|254438085|ref|ZP_05051579.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] gi|198253531|gb|EDY77845.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] Length = 471 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 6/296 (2%) Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + + + + + L+ N PY ++D TG ++ D +PAS Sbjct: 1 MKRRIQHPALAGILLLFTLLMAALAPVTGNSAPYAAMVMDARTGEILHSRNADTQLHPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y+ F ++ + L ITI+ A+ P S G + ++ VKS Sbjct: 61 LTKMMTLYIAFQAVERGEISLDDMITITPLAASEPASKLWLAAGQRIQFRYLIRASGVKS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A AI +L E F + M T++ +G+S T F NAHG+ + GH +TARDM +L Sbjct: 121 ANDAATAIGIALEGNEAAFARRMTATARAMGMSRTTFRNAHGLTETGHMSTARDMTVLGR 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + DFPQY + F + + NTN + + GADG+KTG+T A+GFN+VASA + Sbjct: 181 HMIYDFPQYYNIFSRLTTDAGVSQVSNTNRRFLNAYRGADGIKTGYTRAAGFNLVASAER 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 G + +IA + G RN A LL MGF +IN Q + + P Sbjct: 241 GQERIIATMFGGTSTAQRNARVAELLDMGFARAPTTARINRPSPVPAQGSGGADTP 296 >gi|209548202|ref|YP_002280119.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533958|gb|ACI53893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 427 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 8/319 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRTLLAAVLTVTLAVSAPLAALAGSASL----VLDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F + +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSVASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296 V+LG +R+ A LL + R + ++ + + + ++ + Sbjct: 237 GVVLGGRTARSRDDKMAGLLDRYLGRASSSGGARLVASVGAREPVEVASAADDSDVPVPL 296 Query: 297 CTTQKEIINYNTQMKEAKD 315 + + A D Sbjct: 297 SAPRPADDLAAKSLAYADD 315 >gi|163733947|ref|ZP_02141389.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter litoralis Och 149] gi|161393058|gb|EDQ17385.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter litoralis Och 149] Length = 511 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 146/278 (52%), Gaps = 4/278 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L A+ + I P + A ++D TG V+ D +PASLTK+MT Y+ Sbjct: 37 LYAFAVLWMLVILPLSAAAAPYAA---FVMDARTGEVLHSRNADTRLHPASLTKMMTLYI 93 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F ++ + L T + IS+ A+ PPS K G + ++ +KSAND A AI Sbjct: 94 AFQAVENGEISLDTKVKISRFAASEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIG 153 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L +E F + M T+K LG++ T F NAHG+ + GH +TARDM++L + D+P+Y Sbjct: 154 EALEGSEAAFARRMTRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEY 213 Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +IA + Sbjct: 214 YNLFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATV 273 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 G RN A LL MGF R + K Y Sbjct: 274 FGGTSTIARNARVAELLDMGFKRAPSRATVRKPQKPSY 311 >gi|126733463|ref|ZP_01749210.1| Probable penicillin-binding protein [Roseobacter sp. CCS2] gi|126716329|gb|EBA13193.1| Probable penicillin-binding protein [Roseobacter sp. CCS2] Length = 464 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 99/266 (37%), Positives = 144/266 (54%), Gaps = 2/266 (0%) Query: 25 TNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 PY ++D TG V+ D +PASLTK+MT YV F ++ + L TP+ IS Sbjct: 3 ATAAPYAAMVMDARTGEVLHSRNADTQLHPASLTKMMTLYVAFQAIERGEITLDTPVRIS 62 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + A+ PPS + G T+ L L+ VKSAND A AI E++ +E F MN T++ Sbjct: 63 RLAASEPPSKLGLRSGQTIRLRFLLRAAAVKSANDAATAIGEAISGSEDAFATRMNRTAR 122 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+ T+F NAHG+ Q GH +TARDM++L + DFPQY + F + + + +T Sbjct: 123 AMGMRNTNFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRSADAGVARVRHT 182 Query: 204 NWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + ++ G DG+KTG+T A+GFN+VASA +G + +IA + G + RN L+ M Sbjct: 183 NRRWLDSYAGGDGIKTGYTRAAGFNLVASAQRGQERVIATVFGGSSTSARNARITELMDM 242 Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNE 288 GF R I SN Sbjct: 243 GFNRAPSRATIRRPNPPAAMLTSSNS 268 >gi|302874917|ref|YP_003843550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans 743B] gi|307690464|ref|ZP_07632910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans 743B] gi|302577774|gb|ADL51786.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans 743B] Length = 403 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 164/349 (46%), Gaps = 32/349 (9%) Query: 4 FLVIIAMAMLSN------IFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYP 47 FLV+I++ L +F + ET+ L++ NTG V+ E Sbjct: 12 FLVLISIFQLFVPKAAIVVFAEEAAVETSAAKDTTAINVEANSALLMEPNTGKVLYEKNI 71 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 + PAS+TK+MT + + + LT IT+S+NA + S+ + G T++ Sbjct: 72 HDKYAPASVTKIMTMLLAMEAIDSGRIKLTDTITVSENAKKMGGSSMILETGEVRTVEEI 131 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 +K + + S ND AVA+AE + +E+ FV MN + LG+ T F N G+ GH +TA Sbjct: 132 IKGIAIASGNDAAVAMAEYIGGSEENFVVMMNKKCEELGMKNTTFKNCTGLSADGHLSTA 191 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTC 222 D++++S + P + Y I I +G+K P N N V F G DG+KTGFT Sbjct: 192 YDISLMSRELLK-HPTILKYSSIYMETISEGRKTPIELVNHNKLVRFFKGCDGLKTGFTS 250 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 + + I A+A + +++VI+GA RN+ ++ L++ GF + + Sbjct: 251 EAKYCISATATRDGVRMLSVIMGAPTFKVRNRDASMLMNYGFSKFESKVIVKK------- 303 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 +EV +S + + + +++ +K + +KI L N Sbjct: 304 ---DDEVDKVSFDKKGDKFLMAKSCDEVRVVVEKGGNIETTKKIILNDN 349 >gi|163744788|ref|ZP_02152148.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus indolifex HEL-45] gi|161381606|gb|EDQ06015.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus indolifex HEL-45] Length = 491 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 153/279 (54%), Gaps = 6/279 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L + A + I P ++A PY ++D TG I D +PASLTK+MT Y Sbjct: 13 LFLFAAFWVLVILPLSAMA----APYAAYVIDARTGKEIHAENADTRLHPASLTKMMTLY 68 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F ++ + L T +TIS+NA+ PPS + G + L ++ VKSAND A AI Sbjct: 69 IAFQAVERGELSLDTQVTISQNAASEPPSKLGMRPGQKIALRYLIRAAAVKSANDAATAI 128 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E++ +E F + MN T+K LG++ T F N HG+ ++GH +TARDM + + D+PQ Sbjct: 129 GEAIEGSEAAFARRMNRTAKQLGMTRTTFKNMHGLTENGHLSTARDMTAMGRHLLYDYPQ 188 Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Y + F + +K +TN +G++ GADG+KTG+T A+GFN+ ASA +G++ +I Sbjct: 189 YYNLFSRITADAGVRKVSHTNRRFLGSYKGADGIKTGYTRAAGFNLTASAERGNERIIVT 248 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 + G +RN A L+ +GF ++ + Y Sbjct: 249 VFGGNSTASRNAKVAELMDLGFRRAPSSAPLSKPVPPVY 287 >gi|83310217|ref|YP_420481.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82945058|dbj|BAE49922.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 435 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 1/262 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L +IA+A+ I AE + ++D G V+ PD PASLTK+MT ++ Sbjct: 12 LRLIAVALGVAIIAVAQPAEAGRYAS-IVIDAENGSVLHAANPDTRSYPASLTKVMTLFL 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +F L + L + T S +A+ PS + G +++++ + L+ KSAND AV A Sbjct: 71 LFDELDSGRIRLDSKFTTSAHAAAQSPSKLGLEPGEKISVESLILALVTKSANDAAVVAA 130 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + TE +F M + LG+ T + NA G+ G +T RD A L+ + P Y Sbjct: 131 EGVGGTETRFAHMMTQKAHALGMRNTVYRNASGLPDTGQVSTVRDQATLARALIRSHPGY 190 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 YF + G+ N + + GADG+KTG+ ASGFN+++SA +GD+ +I V+ Sbjct: 191 YKYFSTRQFVYDGQPINTHNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDKRIIGVVF 250 Query: 245 GALDRNTRNKVSASLLSMGFYN 266 G ++R+ LL GF Sbjct: 251 GGSTASSRDNHMGQLLDKGFAK 272 >gi|220920397|ref|YP_002495698.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219945003|gb|ACL55395.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 498 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 3/305 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D +G ++ D +PAS+TK+MT Y++F L+ + L TP+ IS NA+ Sbjct: 49 AAMVVDVKSGRILHAVNEDALRHPASITKVMTLYLLFEQLERGRMSLDTPLEISANAARQ 108 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PS + G+T+T++ A+K L+ KSAND+A AI E++ +E F + M + LG++ Sbjct: 109 APSKLGLRPGATITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMTR 168 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH+ NA G+ TTARD+ IL+ I+ FP+Y YFQ + +G+ N N +G Sbjct: 169 THYANASGLPDSDQITTARDLTILARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGR 228 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G DG+KTG+T SGFN++ SA D+ ++AV+LG +R+ + L+ N Sbjct: 229 VEGVDGIKTGYTRDSGFNLMTSARINDRHIVAVVLGGKSVASRDAIMTRLVE---ANLPK 285 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 + ++E+ T+ + + + + + S + + L Sbjct: 286 AYAGARTTAPVVEVAERPRPAVVAEKPVATRTLVAAADGEDESIETTASTGRPGQPLDLN 345 Query: 330 KNKIT 334 ++ T Sbjct: 346 PSRQT 350 >gi|84500362|ref|ZP_00998611.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola batsensis HTCC2597] gi|84391315|gb|EAQ03647.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola batsensis HTCC2597] Length = 477 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 2/246 (0%) Query: 21 SIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++ E PY ++D +G V+ + D +PASLTK+MT Y+ F ++ + L TP Sbjct: 8 AMREAQAAPYAAMVMDARSGEVLHSSNADARLHPASLTKMMTLYIAFEAVRNGEITLDTP 67 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + IS+NA+ PPS GS + L ++ VKSAND A AI E++ +E +F + M Sbjct: 68 VRISRNAAAEPPSKLGLAAGSKIKLRYLIRASAVKSANDAATAIGEAIEGSEARFARRMT 127 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 T+K LG++ T F NAHG+ + GH +TARDM IL + D+P+Y + F KK Sbjct: 128 RTAKALGMTRTTFKNAHGLTESGHLSTARDMTILGRHLLFDYPEYYNLFSRVQTHAGIKK 187 Query: 200 YPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN +G++ GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A Sbjct: 188 VSNTNRRLLGSYRGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSASRNAKVAE 247 Query: 259 LLSMGF 264 LL +GF Sbjct: 248 LLDLGF 253 >gi|209542214|ref|YP_002274443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] gi|209529891|gb|ACI49828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter diazotrophicus PAl 5] Length = 413 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 4/269 (1%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 + +LD TG V+ E D P+SLTK+MTAY+VF LK + L + +S+ A Sbjct: 67 ARWACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAW 126 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S G ++ + + ++ ++++S ND + +AE + +E++FV MN+ + +GL Sbjct: 127 RMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGL 186 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K N N V Sbjct: 187 SNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 L ADG+KTG T A GF + ASA +G ++ + G N R LL F N Sbjct: 247 DKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANF 305 Query: 268 TDR---KKINYIIKDFYQQNLSNEVPNIS 293 + +K + + + VP ++ Sbjct: 306 ENATLFRKGDIVEQASVWLGTQPTVPLVA 334 >gi|162147581|ref|YP_001602042.1| penicillin-binding protein 5 [Gluconacetobacter diazotrophicus PAl 5] gi|161786158|emb|CAP55740.1| putative penicillin-binding protein 5 precursor [Gluconacetobacter diazotrophicus PAl 5] Length = 422 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 4/269 (1%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 + +LD TG V+ E D P+SLTK+MTAY+VF LK + L + +S+ A Sbjct: 76 ARWACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAW 135 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S G ++ + + ++ ++++S ND + +AE + +E++FV MN+ + +GL Sbjct: 136 RMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGL 195 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K N N V Sbjct: 196 SNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLV 255 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 L ADG+KTG T A GF + ASA +G ++ + G N R LL F N Sbjct: 256 DKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANF 314 Query: 268 TDR---KKINYIIKDFYQQNLSNEVPNIS 293 + +K + + + VP ++ Sbjct: 315 ENATLFRKGDIVEQASVWLGTQPTVPLVA 343 >gi|325661128|ref|ZP_08149755.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472635|gb|EGC75846.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium 4_1_37FAA] Length = 394 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 138/292 (47%), Gaps = 24/292 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----------------TNKLPYYTLLDTNTGHVIAE 44 MR L ++ +L + L++ +TG +I E Sbjct: 15 MRTILAVVLSVILCTGTVCAMPPDGKVLQEEVESEKKNELELTAQSAVLMEASTGKIIYE 74 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 + PAS+TK+MT ++ +++ K L +T+S+ A+ S + G T+ Sbjct: 75 KQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGSQVFLEPGEVQTV 134 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF+N +G+ GH Sbjct: 135 DTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNARAKGLGMEHTHFVNCNGLDADGHL 194 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGM 216 TTA D+A++S + T P+ Y I I K NTN V + A G+ Sbjct: 195 TTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLSNTNKLVRHYPYATGL 254 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 KTG T + F I A+A + LIAVI+ A D R K + +LL+ GF T Sbjct: 255 KTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNYGFGKCT 306 >gi|225572270|ref|ZP_03781134.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM 10507] gi|225040275|gb|EEG50521.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM 10507] Length = 414 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 160/329 (48%), Gaps = 21/329 (6%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + PY L++ +TG ++ E D +PAS+TK+MT ++F ++ + +T S A Sbjct: 54 QSPYGVLMEASTGEILYEKEKDTKRSPASITKIMTLILIFDAIENGSLNMDDMVTTSAYA 113 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S ++G T ++ +K +++ S ND +VA+AE + +E++FV+ MN+ +++LG Sbjct: 114 KSMGGSQVYLEEGETQDVETMIKCIVIASGNDASVAMAEHIAGSEEEFVKKMNDRAQSLG 173 Query: 147 LSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------ 199 + THF + G+ HYTTA D+A++S + T +P+ + Y I I K Sbjct: 174 MKNTHFEDCCGLTDSENHYTTAYDVALMSRELITHYPKILEYSSIWMDTITHKTRQGTSE 233 Query: 200 --YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 NTN + ++ G G+KTG T + + + A A + SLI+V++ A D R +A Sbjct: 234 FGLTNTNKLIRSYEGCVGLKTGSTSLAKYCVSAVAQKNGMSLISVVMAAPDYKVRFSDAA 293 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT---------QKEIINYNT 308 ++ + GF + ++ N + F + L + + E + I T Sbjct: 294 AMFNYGFAKCSLYQEPN-PDRTFQLKVLRGKESQVRGEYGKAFSYLDTSGRSLDKITQKT 352 Query: 309 QMKE--AKDKESHFIDFEKITLLKNKITK 335 ++KE A K+ + L KI + Sbjct: 353 KLKELTAPVKKGDTVGKTVYYLEGEKIGE 381 >gi|269138268|ref|YP_003294968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|267983928|gb|ACY83757.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202] gi|304558304|gb|ADM40968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60] Length = 387 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 129/264 (48%), Gaps = 8/264 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 F + + L+D TG ++A PD NPASLTKLMT YVV L + + L Sbjct: 22 MAFPLVPPHIDAASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVEQALDQGRIGL 81 Query: 77 TTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 ++I +A S K G T+ + ++ +I+ S ND VA+++ + Sbjct: 82 NDRVSIGDDAWATRNPLFKGSSLMFLKPGDRATVSDLIRGIIIDSGNDACVALSDYVSGD 141 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FV+ MN L L THF HG+ G Y++ARD+A+L+ I T Y H++ Sbjct: 142 QADFVRQMNADVSALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAE 201 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD 248 K L G N N + L DGMKTG T ++GFN+VA+++ Q LIAV++GA Sbjct: 202 KSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADS 261 Query: 249 RNTRNKVSASLLSMGFYNKTDRKK 272 R + + LL G N + Sbjct: 262 SRGREQQAKKLLLWGERNFETVQL 285 >gi|89069769|ref|ZP_01157105.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola granulosus HTCC2516] gi|89044715|gb|EAR50826.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola granulosus HTCC2516] Length = 448 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 91/274 (33%), Positives = 147/274 (53%), Gaps = 4/274 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 ML+ + P S A ++D TG V +PASLTK+MT Y+ F ++ Sbjct: 2 MLAALAPLASRA---APYAAMVMDARTGQVFHAENATTRLHPASLTKMMTLYIAFEAVER 58 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + L T +TI + A+ PPS G + ++ VKSAND A AIA ++ ++ Sbjct: 59 GEISLDTVVTIPRQAAAEPPSELGLVTGQQIRFRYLIRAAAVKSANDAATAIAFAISGSQ 118 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + F MN T++ +G+++T+F+NAHG+ +GH +TA DM IL + D+PQY + F + Sbjct: 119 EAFAARMNRTARAMGMNSTNFINAHGLTANGHMSTAADMTILGRHMIYDWPQYYNLFSRR 178 Query: 192 GLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + ++ NTN + + GADG+KTG+T A+G N+VASA +G + +I + GA Sbjct: 179 TTDAGLREVSNTNRRFLDAYAGADGIKTGYTNAAGSNLVASAQRGSERIIVTVFGAPSSA 238 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 RN+ L+ +GF + + + + Y N Sbjct: 239 VRNQRVMELMDLGFSRAPSQVAVAALQRPPYLGN 272 >gi|170730550|ref|YP_001775983.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12] gi|167965343|gb|ACA12353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12] Length = 347 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 151/318 (47%), Gaps = 16/318 (5%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88 +D +G V+A PASLTK+MT+YV+ + +K K + +++NA Sbjct: 1 MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQMMMTENAWRKGGAG 60 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 +HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N + Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKD-----KE 317 + +V + V + + ++ ++ K Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300 Query: 318 SHFIDFEKITLLKNKITK 335 + K+TL + + Sbjct: 301 GQSVGKVKVTLDGKVVAQ 318 >gi|27376431|ref|NP_767960.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] gi|27349571|dbj|BAC46585.1| bll1320 [Bradyrhizobium japonicum USDA 110] Length = 487 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 161/282 (57%), Gaps = 4/282 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L++ ++G V+ + PW PAS+TK+MTAYV +K+ + L T +T+S A+ P Sbjct: 37 LLIEADSGKVLQADNATIPWYPASVTKIMTAYVTLKAVKDGRLTLDTLLTVSPTAASQSP 96 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+T+K LG++ T Sbjct: 97 SKMGFRPGTQLTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSVMMNDTAKKLGMTQTS 156 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++N +G+ G T+ARD+ IL+ D P+Y ++ I + + N N +G + Sbjct: 157 YVNPNGLPADGQITSARDLGILARSFLRDLPEYEYFVHIPAIRFGKRVTGNFNKLIGRYP 216 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTD 269 GADG KTGF CASG+N+VASA + + LIAV+LGA R +A LL GF N + Sbjct: 217 GADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGTARAVKAAQLLERGFSQDNLSW 276 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 + +++ + PN+ +++C ++ + Sbjct: 277 LRPSLGTVENLV--PVDASPPNLRDDMCGGHRKRPASDDDDA 316 >gi|86357959|ref|YP_469851.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86282061|gb|ABC91124.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 354 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/254 (34%), Positives = 135/254 (53%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + LS+ + A+ ++D +G V+ + D PASLTK+MT Y+ F Sbjct: 71 LRATALSSALLMCAFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFE 130 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L E + +T+S+NA P G +TL A++ +IV SAND AVAIAE L Sbjct: 131 ALHEGRLTWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIIVLSANDSAVAIAEQL 190 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E+ F + M + + LG+ T F N G+ TTARDMA L + DFP+ Sbjct: 191 GGSEQTFARTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKL 250 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F ++G + +G K+ N + + G DG+KTG+T ASG+N+V SA++ + L+ V++G Sbjct: 251 FSMRGFKFRGMKFRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRLVGVVMGEK 310 Query: 248 DRNTRNKVSASLLS 261 + R+ ASLL Sbjct: 311 TASLRDDRMASLLD 324 >gi|163732221|ref|ZP_02139667.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149] gi|161394519|gb|EDQ18842.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149] Length = 389 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 10/290 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 I+ A + + A + ++D TG V+ D P PAS++KLMT Y+ Sbjct: 2 FRIVLAAFVLVASTLSAAAFETRAGAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLYM 61 Query: 65 VFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 F ++ K L + +S++A Y S+ + G T+++++ L+ +IV S ND Sbjct: 62 AFEAVRRGKADGGLDLNELLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDAC 121 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 V IAE+L TE F + M ++ LG++ + F+NA G Q GH + RD+AIL+ R+ Sbjct: 122 VVIAEALSPDGTEYGFARMMTQRAQQLGMNNSTFINASGWPQTGHVMSMRDLAILADRLI 181 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TDFP++ F + N N + +GADG+KTG T +G+ +V SA QG Sbjct: 182 TDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 D+ +I VI G R + S ++++ F R I ++F + ++ Sbjct: 242 DRRVIFVITGLETTAARAQESQAIVNWAFRQFAMR-DIGKAGQEFAKADV 290 >gi|254487632|ref|ZP_05100837.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp. GAI101] gi|214044501|gb|EEB85139.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp. GAI101] Length = 470 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 8/321 (2%) Query: 16 IFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + P ++A PY ++D +G V+ + +PASLTK+MT Y+ F +K + Sbjct: 2 VLPLSALA----APYAAYVIDARSGEVLHSRNAETRLHPASLTKMMTLYIAFEAIKRGEI 57 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L + + IS +A+ PPS K G T+ L ++ VKSAND A AI E++ +E KF Sbjct: 58 SLDSQVKISSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKF 117 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN T+K LG++ T F NAHG+ + GH +TARDM ++ + DFP+Y + F + Sbjct: 118 ARRMNRTAKALGMTKTTFKNAHGLTEAGHMSTARDMTMMGRHLLYDFPEYYNLFSRITAD 177 Query: 195 IKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 +K +TN + ++ GADG+KTG+T A+GFN+VASA +G++ +I + G + RN Sbjct: 178 AGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLVASAERGNERVIVTVFGGTSTSARN 237 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 A L+ +GF + + K Y +V S + I + + Sbjct: 238 AKVAELMDLGFRRAPSKAPLQKPAKPVYAD--VEDVVVASGTTAGAAGKTIRLIGAVTTS 295 Query: 314 KDKESHFIDFEKITLLKNKIT 334 K + + + ++T Sbjct: 296 KRPVLRPVSEAPVVVTVAQVT 316 >gi|260428585|ref|ZP_05782564.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45] gi|260423077|gb|EEX16328.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45] Length = 392 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 82/300 (27%), Positives = 140/300 (46%), Gaps = 8/300 (2%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++A A + + A +LD TG V+ D PAS++KLMT Y+ F Sbjct: 10 LLAAASTLAVLATQAGAFDTSARAAFVLDYTTGTVLMAKNADEAMPPASMSKLMTLYMAF 69 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + + + L + +S++A Y S + +++ L+ +IV S ND IAE+ Sbjct: 70 EAIHDGRLTLDERLPVSEHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACAVIAEA 129 Query: 127 LC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 L TE F + M ++ LG++ + F NA G H + RD+ +L+ RI DFP++ Sbjct: 130 LSPNGTEPGFAELMTRRAQQLGMTNSTFANASGWPAANHRMSMRDLTLLATRIIEDFPEF 189 Query: 185 MHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 F K G+ N N + +GADG+KTG T +G+ +V SA QG++ ++ Sbjct: 190 YPIFAEKQFAFDGRAPSNVNNRNPLLRLNIGADGLKTGHTAEAGYGLVGSAKQGERRVVF 249 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEVPNISEEVCT 298 + G R + S S+++ F +R KK + + + V ++E+ T Sbjct: 250 AMTGLDSERARAEESESIVNWAFRQFAERTLVKKGTAVAQADVWMGSAESVGLVAEDDIT 309 >gi|163738564|ref|ZP_02145978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis BS107] gi|161387892|gb|EDQ12247.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis BS107] Length = 396 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 6/276 (2%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R L + A +L ++ + A + +LD T V+ D PAS++KL Sbjct: 8 LRTALKLTCAAGLLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKL 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT YV F +++ + L + +S++A Y S + +++ L+ +IV S ND Sbjct: 68 MTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDA 127 Query: 120 AVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 V +AE+L TE F ++M ++ +G+ + F N++G GH + D+AIL+ ++ Sbjct: 128 CVVLAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKL 187 Query: 178 KTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 DFPQY F + E G+ N N +G +GADG+KTG T +G+ +V SA Q Sbjct: 188 IEDFPQYYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQ 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GD+ +I VI G R + + ++++ F + Sbjct: 248 GDRRVIFVITGLDSTTARAEEAEAIVNWSFRQFAKK 283 >gi|153810795|ref|ZP_01963463.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174] gi|149833191|gb|EDM88273.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174] Length = 422 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 147/318 (46%), Gaps = 26/318 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 P L++ TG + D +PAS+TK+MT ++F L LT P+T S Sbjct: 64 PELSAPSAVLMEAETGQFVYAKDKDTRRSPASVTKIMTLILIFDHLHAGDISLTDPVTTS 123 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +A S ++G T++ +K +++ S ND +VA+AE + +E++FV MN + Sbjct: 124 AHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFISGSEQEFVAQMNLRAD 183 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 LG+ THF++ G+ HYTTA D+AI+S + +P+ + Y I I + Sbjct: 184 RLGMKNTHFIDCCGLTDSDEHYTTANDIAIMSRELIVKYPKILDYSSIWMETIIHETSQG 243 Query: 200 -----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 NTN + T+ G G+KTG T +GF + A+A + LI+V++ A D R K Sbjct: 244 IKEFGLTNTNRLIRTYPGCRGLKTGSTSKAGFCLSATAERNSLKLISVVMAAPDYKARLK 303 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 +A+LL GF + Y+ N +P I + + + Y K Sbjct: 304 DAAALLDYGFSRCS-----------IYEDNTPESLPAIPVKRGLHRSAAVQY------GK 346 Query: 315 DKESHFIDFEKITLLKNK 332 D KIT + K Sbjct: 347 TFRYLSTDGTKITTVNKK 364 >gi|170760218|ref|YP_001787185.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] gi|169407207|gb|ACA55618.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3 str. Loch Maree] Length = 407 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 34/306 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETNK---------------------LPYYT 32 M++ F VII + + +F P + + N+ Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 TDRKKI 273 + + Sbjct: 300 ECKTLV 305 >gi|291613195|ref|YP_003523352.1| beta-lactamase [Sideroxydans lithotrophicus ES-1] gi|291583307|gb|ADE10965.1| Beta-lactamase [Sideroxydans lithotrophicus ES-1] Length = 419 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 143/298 (47%), Gaps = 9/298 (3%) Query: 1 MRQFLVIIAMAMLSNIFPF----LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ L+ + + + F S Y L D +G + E + PA L Sbjct: 41 MKRALIFLFALLPTLAFSQEQEQSSSPPILAANSYALYDYTSGQFLVEQNANAHIPPAQL 100 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVK 114 TKLMTAYVVFS +K+ K LT + S A+ G ++++ L+ LIV+ Sbjct: 101 TKLMTAYVVFSAIKQGKLSLTRKLLPSAYATRMQNDEPRMYLTAGKEVSVEELLRGLIVQ 160 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND A +AE+L E MNN ++ LGL THF+NA G HY++A D+A+++ Sbjct: 161 SANDAARVLAETLANHEMALADAMNNEAQQLGLKDTHFVNATGTPDAQHYSSAHDLALIA 220 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + DFP+Y H + + + G N N + DG+ TG + F +VASA + Sbjct: 221 AALVRDFPEYYHIYSQREYQYNGINQFNRNRLLWMDPFVDGLATGNNESEEFYMVASAKR 280 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEV 289 ++ LI+V++G R+ S LL+ GF + + K + + + + EV Sbjct: 281 DERRLISVVIGTATEKLRSSESQRLLNYGFQDFEAIRLYAKDQLVSSKYVWKGTAKEV 338 >gi|312797424|ref|YP_004030346.1| D-alanyl-D-alanine serine-type carboxypeptidase [Burkholderia rhizoxinica HKI 454] gi|312169199|emb|CBW76202.1| D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4) [Burkholderia rhizoxinica HKI 454] Length = 403 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 19/334 (5%) Query: 16 IFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 I P ++A+ + L+D ++ +A D PASLTKLMT+Y+VF LK Sbjct: 30 IVPADALAQVPPPAVNARSWVLVDASSAQTLASANADERVEPASLTKLMTSYLVFDALKT 89 Query: 72 KKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 KK + + + S + +T+ + + +IV+S ND A+A+AE + Sbjct: 90 KKISMDQTVMPGEAVRRVGTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGG 149 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E FVQ MN ++ LG+ TH+ + +G+ HYT+A D+A+LS + D+P+Y F Sbjct: 150 SEAHFVQMMNEAAQKLGMKNTHYADVNGMPNPQHYTSAADLAVLSAHLIRDYPEYYSIFA 209 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAV 242 +K K N N + DG+KTG T A+G+ ++ASA + + L++V Sbjct: 210 VKDFTYNKIKQLNRNRLLWIDPTVDGLKTGHTKAAGYCLIASAKRPLPGVPDASRRLVSV 269 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDF-YQQNLSNEVP---NISEEV 296 ++G + R + S +L+ G+ + K N +I + L N VP + + Sbjct: 270 MMGEPKEHDRTQDSLKMLNYGYTAYDTVRLYKANQVIDSPRVYKGLQNAVPVGVKSDQYI 329 Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + ++ D + + +K Sbjct: 330 TVPKGVGDKIKPVLERHGPLVGPIADGQVVGTVK 363 >gi|255284455|ref|ZP_05349010.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255265000|gb|EET58205.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 508 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 9/245 (3%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ ++G V+ E +PAS+TK+MT ++F L++ L + S +A Sbjct: 113 PSALLMEASSGTVLYEKDAHTRRSPASVTKIMTTLLIFEELEKGTLKLDDEVVTSAHAKS 172 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T+D LK ++V S ND +VA+AE + TE +FV MN + LG++ Sbjct: 173 MGGSQVFLEEGEKQTVDTLLKCILVSSGNDASVAMAEHIGGTEAEFVSRMNEKAAELGMA 232 Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------ 201 THF + G+ HYTTA D+A++S + T FPQ Y I I Sbjct: 233 DTHFEDCCGLTDSDNHYTTAYDIALMSRELITRFPQVYDYTTIWMDTITHVTRRGSSEFG 292 Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN + ++ G G+KTG T + F + A+A++ D LI+V++ D TR +A++ Sbjct: 293 LANTNKLLRSYDGCMGLKTGSTSKALFCVSATAVRNDIELISVVMAGPDSKTRFADAAAM 352 Query: 260 LSMGF 264 L+ GF Sbjct: 353 LNYGF 357 >gi|163743049|ref|ZP_02150432.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis 2.10] gi|161383732|gb|EDQ08118.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis 2.10] Length = 396 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 6/276 (2%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R L + A +L ++ + A + +LD T V+ D PAS++KL Sbjct: 8 LRTALKLTCAAGLLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKL 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT YV F +++ + L + +S++A Y S + +++ L+ +IV S ND Sbjct: 68 MTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDA 127 Query: 120 AVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 V +AE+L TE F ++M ++ +G+ + F N++G GH + D+AIL+ ++ Sbjct: 128 CVVLAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKL 187 Query: 178 KTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 DFPQY F + E G+ N N +G +GADG+KTG T +G+ +V SA Q Sbjct: 188 IEDFPQYYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQ 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GD+ +I VI G R + + ++++ F + Sbjct: 248 GDRRVIFVITGLDSTTARAEEAEAIVNWSFRQFAKK 283 >gi|328541732|ref|YP_004301841.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326411484|gb|ADZ68547.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 458 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 158/281 (56%), Gaps = 5/281 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 F V+IA + + P + + ++D ++G V+ E W PASLTK+MTA Sbjct: 12 SFGVLIAAFLAAVQAP----PARADIGSWIVIDADSGQVLDEFQGTRRWYPASLTKMMTA 67 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV ++E ++ L + +T S+N+ PPS FK G+ MT+D ALK+++VKSANDIAVA Sbjct: 68 YVTLKAIREGRSSLDSAVTQSQNSLAQPPSKMGFKVGTQMTVDTALKIVMVKSANDIAVA 127 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 + E++ TE FV MN + LG+ THF N HG+ + ++A DMAIL+ ++ DFP Sbjct: 128 LGEAIGGTEANFVALMNAEAARLGMRDTHFANPHGLPDNRQVSSALDMAILARALRRDFP 187 Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + Y+ GL + + N + GADGMKTG+ C SG+N+ ASA + +++IA Sbjct: 188 EARGYYGHAGLTFGKQTLRSANREFLLRVPGADGMKTGYICNSGYNVAASATRRGRTVIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 V+LGA R + + GF + + ++ + + Q Sbjct: 248 VVLGASSGLERTAFAREAIDKGFRARGSGRTVDNMPRSAGQ 288 >gi|254477194|ref|ZP_05090580.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11] gi|214031437|gb|EEB72272.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11] Length = 405 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 8/297 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M+ + +A +L ++ + A + +LD T V+ D PAS++KLM Sbjct: 21 MK---LAVAAGLLVSVSALSAAAFDTRARAAYVLDQETDTVLLNKNGDLALPPASMSKLM 77 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T YV F +++ + L + +S++A Y S + +++ L+ +IV S ND Sbjct: 78 TLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDAC 137 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 V IAE+L TE F ++M ++ +G+ + F N++G GH + +D+AIL+ R+ Sbjct: 138 VVIAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVQDLAILAERLI 197 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 DFP+Y F K E G+ NT N +G +GADG+KTG T +G+ +V SA QG Sbjct: 198 EDFPEYYPLFAEKRFEFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAKQG 257 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 D+ +I VI G N R + + ++++ F + + + P + Sbjct: 258 DRRVIFVITGLDSTNARAEEAEAIVNWSFRQFAKKTVAKAGVPVAEAEVWRGAEPTV 314 >gi|326315218|ref|YP_004232890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372054|gb|ADX44323.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 393 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 16/290 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWN 52 M+ FL ++ ++ ++ + P Y LLD +G V+A D P Sbjct: 5 MKSFLPLLRSFAMAAALAPAALWAQVQAPQPPEIAARNYLLLDVTSGQVLAAKDIDAPVE 64 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTKLMT Y+VF L +K L + +S A + P S + +D+ LK +I Sbjct: 65 QASLTKLMTGYLVFDALSSRKITLEQKLPVSVLAWKMPGSRMFIDPKMQVPVDDLLKGMI 124 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND ++A+AE + + + FV+ MN+ +K LG+ T + N G+ + GH TTARD++I Sbjct: 125 VQSGNDASMALAEGVGGSAENFVKLMNDQAKALGMKNTAYKNPEGLTEPGHTTTARDLSI 184 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIV 229 L+ R+ DFP+YMHY+ K G N N + DG+KTG T A+G+ +V Sbjct: 185 LATRLMKDFPEYMHYYSTKHYAYPGTPPSNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLV 244 Query: 230 ASAIQG-----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 A++ + + L++++LG N R S LL+ G+ K + Sbjct: 245 ATSKRDFPNVGQRRLLSIVLGTASENARANESQKLLNWGYTAYDAVKLFD 294 >gi|187779539|ref|ZP_02996012.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC 15579] gi|187773164|gb|EDU36966.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC 15579] Length = 407 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 34/301 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIF--PFLSIAETN---------------------KLPYYT 32 M++ F VII + + +F P + ++ N + Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVNAYSKQNDLKKEEKTEEKDSNEGGSLDVEAKSAL 60 Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 L++ TG VI E + PAS+TK+MT + + K LT +TIS+NA + S Sbjct: 61 LIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120 Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 N G+ + GH T+A D++I+S + Q + Y I +G+K P N N V Sbjct: 181 KNCTGLSEEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVNHNKLV 239 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF Sbjct: 240 RFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKF 299 Query: 268 T 268 Sbjct: 300 Q 300 >gi|297181495|gb|ADI17682.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0130_23I23] Length = 380 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 4/275 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + I + N+ + + Y L + NT V+A D P PASLTKLM Sbjct: 1 MNKIKFIFLTFLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T+YVV ++KE LT IS NA + P S ++ + + + +K +I++S ND + Sbjct: 61 TSYVVADYIKEDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDAS 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E+ F MN ++ LG+ T F NA G+ + T+A D+A+L+ + + Sbjct: 121 VALAEHVAGSEENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKN 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQ 237 FP + ++ K G N N + + DG+KTG+T ++G+ +V SA++ Sbjct: 181 FPDHYRHYSQKSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGM 240 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 L+AV+LG+ D R ++L+ GF K Sbjct: 241 RLVAVVLGSEDDK-RFNDVSNLMVYGFRYFKTEKL 274 >gi|28211200|ref|NP_782144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28203640|gb|AAO36081.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 395 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 18/289 (6%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWN 52 + F++ I + + + P AE + L++ N+G +I E + Sbjct: 6 KTFILTILLIFIFQCTVVPIRVKAEGEDKGEIQVEASSALLMEPNSGKIIYEKNANEKLP 65 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALK 109 PAS+TK+MT + + K LT IT+S+NA + S+ G T++ LK Sbjct: 66 PASVTKIMTMLIAMEAVDSGKIKLTDKITVSENAKKNGQGGNSSMLLDTGEIRTVEEILK 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + + S ND A A+AE L +E+ FV+ MN+ +K LG+ T+F N G+ + GH TTA D Sbjct: 126 GIAIASGNDAATAMAEYLDGSEEAFVKTMNDRAKALGMKNTNFKNCSGLPEEGHITTAYD 185 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCAS 224 +A++S + P + Y I +G+K P N N V F G DG+KTG+T + Sbjct: 186 IALMSKELLK-HPTILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGYTSEA 244 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + I A+A++ ++ VI+GA + RNK +++L++ GF ++ I Sbjct: 245 KYCISATAVRDGVRVLTVIMGAPNYKIRNKEASNLMNYGFSKFENKNII 293 >gi|119384875|ref|YP_915931.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] gi|119374642|gb|ABL70235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] Length = 385 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 8/279 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR I ++ P + +TN + + D TG V+ E D P PAS++KLM Sbjct: 1 MRALTFRIFALLMVLALPARAF-DTNARAAW-VYDVATGTVLMEKNADEPLPPASMSKLM 58 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T ++F L + + + T +S A + S + T+++ + +I+ S ND Sbjct: 59 TLNMLFEALHDGRVAMDTTFPVSTKAWQMGGSKMFVEPADRPTVEDLIHGIIINSGNDAC 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V +AE L TE+ F + MN ++ LG++ +HF+N+ G H + D+ +L+ R+ T+ Sbjct: 119 VVVAEGLAGTEEAFARLMNERARQLGMANSHFVNSSGWPDPQHRMSMHDLGLLATRLITE 178 Query: 181 FPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQ 234 FP+ F + KG+ N N + G ADG+KTG T +G+ +V SA+Q Sbjct: 179 FPELYKNFALTEYNYKGRVPSNAGNRNPLLRLGTGDWKADGLKTGHTQEAGYGLVGSAVQ 238 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 GD+ ++ VI G R + + +++ + T R I Sbjct: 239 GDRRIVFVITGLSSEKARAEEAEQIVNWAYRQFTMRTII 277 >gi|319935945|ref|ZP_08010369.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1] gi|319809059|gb|EFW05555.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1] Length = 381 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 12/344 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M + ++I ML +FP + AE K L++ +T V+ ++ PAS Sbjct: 1 MIKKILICLFVMLLCMFPKVVYAEDLKLAPNAASSVLMEASTKQVLYSSHETDKLFPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT ++F + + +T S A+ S ++G M++ + K + + SA Sbjct: 61 TKIMTMILMFEAINKGTLKWDDVLTCSAYAASMGGSQIYLEEGEQMSVSDLFKGISIASA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND V + E + T FV+ MN +K L L+ THFMN G+ HYT A D+ +++ Sbjct: 121 NDACVMVGERIAGTNDGFVKMMNEKAKELNLTNTHFMNPTGLHDDNHYTCALDLGLMASY 180 Query: 177 IK-----TDFPQYMHYFQ-IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 + F Y I+ + NTN + ++ GADG+KTG+T +G+ IV+ Sbjct: 181 LIQIGGDRLFATTSLYDSYIRENSAQKFWLVNTNKLLKSYEGADGLKTGYTKEAGYCIVS 240 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +A + LIAV++ + RN+ + LL GF + I + D ++ Sbjct: 241 TAKRNGLRLIAVVMKESEPKVRNQEVSQLLDYGFSLYEN--VILFKKDDIIEKIPIENAR 298 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 S EV + + + ++ E ++ + I Sbjct: 299 QKSVEVVCKEDVVYVKDKSAQDEVTYEMNYTNLVPPIKKGETIG 342 >gi|58038510|ref|YP_190474.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] gi|58000924|gb|AAW59818.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H] Length = 424 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 133/254 (52%), Gaps = 6/254 (2%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 I PF ++A + ++D +TG V+ + D P+SLTK+MTAY+VF L + Sbjct: 72 IGPFDTVAR-----WAYVVDYDTGAVLLDKASDERMAPSSLTKMMTAYIVFGMLATGRIR 126 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L + +S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV Sbjct: 127 LEQSLPVSEKAWRTQGSKMFVPLGQSVLVSDLIQGMLIQSGNDACIVLAEGIAGSEERFV 186 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 MN + LG+ +HF+N G+ GHY TARD+A ++ + DFPQY HYF Sbjct: 187 AMMNEEAPKLGMMNSHFVNVTGLPADGHYMTARDVATVASHLIRDFPQYYHYFGELEFTY 246 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N N V L ADG+KTG T A GF + AS+ + +I VI G+ N R Sbjct: 247 NHIRQGNRNVLVDKGL-ADGLKTGHTEAGGFGLCASSQRNGNRVIVVINGSSSSNERAHE 305 Query: 256 SASLLSMGFYNKTD 269 L+S F N + Sbjct: 306 GERLMSWAFANFEN 319 >gi|297539773|ref|YP_003675542.1| beta-lactamase [Methylotenera sp. 301] gi|297259120|gb|ADI30965.1| Beta-lactamase [Methylotenera sp. 301] Length = 390 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 150/338 (44%), Gaps = 25/338 (7%) Query: 4 FLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 FL+ +S++ ++ + Y L D N+ +VIA PASLTK+ Sbjct: 16 FLLSTTALAISSVAQAESAQIAPPPNLAVKAYLLKDFNSNYVIASQNSSMRIEPASLTKI 75 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTAY+ F LK LT + +S+ A + S + +T+D L I++S ND Sbjct: 76 MTAYLAFKALKNGHLSLTQTLPVSELAWKVEGSKMFIEPNKPVTVDELLHGTIIQSGNDS 135 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 ++A+AE + TE +F MN + LG+ TH+MNA G+ H+TTA D+A L+ + Sbjct: 136 SIALAEGIAGTEPQFADMMNKEAARLGMKNTHYMNATGLPDAQHFTTADDLATLAAALIR 195 Query: 180 DFP-QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP QY + +K PN N + DGMKTG T +G+ ++ASA + Sbjct: 196 DFPDQYQRLYSVKEYTYNKITQPNRNRLLWADPNVDGMKTGHTETAGYCLIASAKRDGTR 255 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNK--------------------TDRKKINYIIK 278 I+V+LGA + R S LL+ GF T+ + + + Sbjct: 256 RISVVLGAPTDSARASESQKLLNYGFQYFDSKLVYKQGQSINQLKVWKGTENQLASTVAN 315 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 D + + N+ + +TQ I K Sbjct: 316 DLFVTVPKGDYANVKAVMSSTQPLIAPIKKGQVIGSVK 353 >gi|255100309|ref|ZP_05329286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-63q42] Length = 387 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 155/352 (44%), Gaps = 24/352 (6%) Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKL-------PYYTLLDTNTGHVIAENYPDHP 50 M++ + I +A+ F F + E L+D +G ++ E Sbjct: 1 MKKLASTALAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MT ++ L K L + +S+ AS S + G T +D LK Sbjct: 61 LPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+ Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225 A++S + + + GKK NTN + + GA G+KTGFT + Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYIIKD 279 + + ASA +G+ L+A LGA R ++SLL+ GF N K I + D Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 +N V + + +++ K+ + + +K T+L Sbjct: 301 KADENKVKLVAKEDLNTLIKKGSSKEFEKKIEIVKNPK---MPIKKGTVLGK 349 >gi|77464261|ref|YP_353765.1| penicillin-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77388679|gb|ABA79864.1| Probable penicillin-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 501 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 10/272 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V +AM M + PY ++D TG + E + +PASLTK+MT Sbjct: 40 LFVFVAMVM--------AAQSAVAAPYAAIVMDARTGETLYETNSETRLHPASLTKMMTL 91 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A A Sbjct: 92 YITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATA 151 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 I E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFP Sbjct: 152 ICEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFP 211 Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 QY + F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA Sbjct: 212 QYYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIA 271 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + G RN A LL +GF + K+ Sbjct: 272 TVFGGKSTAHRNAKMADLLDLGFREAPENAKV 303 >gi|126698888|ref|YP_001087785.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile 630] gi|254974836|ref|ZP_05271308.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-66c26] gi|255092224|ref|ZP_05321702.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile CIP 107932] gi|255306248|ref|ZP_05350420.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile ATCC 43255] gi|255313963|ref|ZP_05355546.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-76w55] gi|255516643|ref|ZP_05384319.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-97b34] gi|255649742|ref|ZP_05396644.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-37x79] gi|260682898|ref|YP_003214183.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260686496|ref|YP_003217629.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|306519851|ref|ZP_07406198.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] gi|115250325|emb|CAJ68147.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile] gi|260209061|emb|CBA62190.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile CD196] gi|260212512|emb|CBE03449.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile R20291] Length = 387 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 155/352 (44%), Gaps = 24/352 (6%) Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKL-------PYYTLLDTNTGHVIAENYPDHP 50 M++ + I +A+ F F + E L+D +G ++ E Sbjct: 1 MKKLASTALAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MT ++ L K L + +S+ AS S + G T +D LK Sbjct: 61 LPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+ Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225 A++S + + + GKK NTN + + GA G+KTGFT + Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYIIKD 279 + + ASA +G+ L+A LGA R ++SLL+ GF N K I + D Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 +N V + + +++ K+ + + +K T+L Sbjct: 301 KADENKVKLVAKEDLNALIKKGSSKEFEKKIEIVKNPK---MPIKKGTVLGK 349 >gi|83593448|ref|YP_427200.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] gi|83576362|gb|ABC22913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum ATCC 11170] Length = 468 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 140/263 (53%), Gaps = 4/263 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + L ++A+ L P + A ++D +TG V+ D PASLTK+MT Sbjct: 26 RILAMLAVVFLLLGLPTQAFAGYAS----IVVDASTGRVLQARNADMRNYPASLTKMMTL 81 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F + K L + + +SK A+ PS G+ + +++A+K L+ KSAND+AV Sbjct: 82 YLLFEAIDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVV 141 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE+L TE F M + LG+S T F NA G+ +G TTARDMA+LS + FP Sbjct: 142 IAEALGGTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFP 201 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + +F + + N V + GADG+KTG+ ASGFN+ +SA++ + L+AV Sbjct: 202 NHYRFFATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAV 261 Query: 243 ILGALDRNTRNKVSASLLSMGFY 265 + G R+ +LL GF Sbjct: 262 VFGGQTARARDTQMMALLDEGFA 284 >gi|239904889|ref|YP_002951627.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] gi|239794752|dbj|BAH73741.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] Length = 386 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 139/255 (54%), Gaps = 1/255 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 ++ + L + NTG V+ E PD PASLTK++T Y++F +++ + I Sbjct: 112 AVGSPLTVKSAILWNMNTGEVLYEQNPDVQIPPASLTKVLTLYILFDAIRQGRLRPWDVI 171 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMN 139 +S A+ SN + G + + + +K + V SAND +AIA++ + FV MN Sbjct: 172 EVSPRAATQGGSNMRLRPGEQVKVTDLIKGIAVASANDACMAIADNLENGNAEAFVALMN 231 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +T+K LG++ + F N +G+ G TTARDM L+ FP+ + ++ ++ Sbjct: 232 DTAKRLGMTNSVFFNPNGLPADGQVTTARDMLKLAAAYLEQFPKSLTIHSMQFFTHNNRQ 291 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G + G DG+KTGF CASG+NIVA+A++GD LIAV+LG+ + R + +A L Sbjct: 292 RHNANSLLGRYEGVDGLKTGFVCASGYNIVATAMRGDTRLIAVVLGSRNPRVRERETAKL 351 Query: 260 LSMGFYNKTDRKKIN 274 L GF +K Sbjct: 352 LDKGFKMVQAKKAAG 366 >gi|323142851|ref|ZP_08077563.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT 12066] gi|322417393|gb|EFY08015.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT 12066] Length = 429 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 8/316 (2%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 T + L+D ++G V+ E+ PASLTK+MT+YV+ +K + + I Sbjct: 65 PPTFDAESWVLMDYHSGQVLFEHNGQKKIWPASLTKMMTSYVIGMEIKAGRLKPDDQVMI 124 Query: 83 SKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 ++ A S + G T+++D+ K +I++S ND VA+A L +E FV MN Sbjct: 125 TEEAWSKNYSDSSKMFIEVGDTVSVDSLNKGIIIQSGNDACVAMAIHLAGSEAGFVSVMN 184 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LGL+ THF N HG+ +Y+TA DMA+L + D P+ + K G K Sbjct: 185 TYAKQLGLNHTHFSNVHGLFSEDNYSTAYDMALLGRALIRDLPEEYSIYAQKEFTFNGIK 244 Query: 200 YPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + L DG+KTG G+N+VASA G+ LIA ++GA + R Sbjct: 245 QSNRNRLLWDKTLNVDGIKTGHLSQVGYNLVASAPSGNMRLIASVIGAKSESQRADFCRQ 304 Query: 259 LLSMGFYNK---TDRKKINYIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMKEAK 314 +LS GF T K+ I+K + ++ V ++E+V + N ++ Sbjct: 305 MLSYGFRFFELYTPFKQGQSILKREVRLGDTDSVDLTVNEDVGMMIPRGSSSNIKISYRL 364 Query: 315 DKESHFIDFEKITLLK 330 +K K L Sbjct: 365 NKAVFTAPIAKGDNLG 380 >gi|330994628|ref|ZP_08318551.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp. SXCC-1] gi|329758269|gb|EGG74790.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp. SXCC-1] Length = 428 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 1/247 (0%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 + ++D TG V+ E D P+SLTK+MTAY+VF L+ + L + +S+ A Sbjct: 82 ARWACIVDYTTGAVLLEKAADERMPPSSLTKMMTAYIVFGMLRAGRLTLEQTLPVSEKAW 141 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S T+ + + ++ ++++S ND + +AE + +E++FV MN + LG+ Sbjct: 142 RMQGSKMFVPLNGTVAVSDLIQGMVIQSGNDACIVLAEGIAGSEEQFVGLMNAKAAELGM 201 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 S +HF+NA G GHY +ARD+A ++ + DFP Y H+F K N N V Sbjct: 202 SNSHFLNATGWPMDGHYMSARDVATIAMHLIHDFPDYYHFFSEKSFRYNKISQENRNVLV 261 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + ADG+KTG T A GF + ASA +G ++ I G N R + L F N Sbjct: 262 VRGV-ADGLKTGHTDAGGFGLCASAERGGNRVVMAINGLPSSNARAQEGERLFEWSFVNF 320 Query: 268 TDRKKIN 274 + ++ Sbjct: 321 ENATLVH 327 >gi|325292859|ref|YP_004278723.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325060712|gb|ADY64403.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 480 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 1/259 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M +F V + +A + A+ + ++D TG V+ PD PASLTK+M Sbjct: 1 MVRF-VALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGEDPDGLRYPASLTKMM 59 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + L + + +S NA++ PPS + G ++T++ A+ L+ +SAND+A Sbjct: 60 TLYLTFEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSITVEQAILALVTRSANDMA 119 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E + +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ Sbjct: 120 TALGEYIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 179 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY YF + + N N VGT G DG+KTG+T A+G N+ SA +S++ Sbjct: 180 FPQYYGYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTGYTRAAGSNLATSAQLDGRSIV 239 Query: 241 AVILGALDRNTRNKVSASL 259 AV+LG R+ L Sbjct: 240 AVVLGGRSSAARDATMRKL 258 >gi|148977058|ref|ZP_01813704.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145963718|gb|EDK28979.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 373 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 131/266 (49%), Gaps = 5/266 (1%) Query: 9 AMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 ++ + P + A + Y L+D N+G V+ E NPASLTKLMT+YV Sbjct: 1 MVSTAAIAAPSIVPAPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQ 60 Query: 68 FLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +K + IS+NA S + + + + + + LI++S ND +VAIA Sbjct: 61 EMKRGNISADDKVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + ++ FV MN+ + +L L THF NAHG+ Y+T D+A+L I D P Sbjct: 121 EQVAGSQDAFVDLMNSWATSLKLENTHFANAHGLDAEDLYSTPYDIALLGRAIIKDLPDV 180 Query: 185 MHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + G N N + L DGMKTG+T +G+++ +SA QG+ LIAV+ Sbjct: 181 YGLYSERSFSYNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVV 240 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTD 269 +GA +R S LLS GF Sbjct: 241 MGASSVKSRESDSKQLLSYGFRFFDT 266 >gi|126463103|ref|YP_001044217.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|126104767|gb|ABN77445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] Length = 474 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 10/272 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V +AM M + PY ++D TG + E + +PASLTK+MT Sbjct: 13 LFVFVAMVM--------AAQSAVAAPYAAIVMDARTGETLYETNSETRLHPASLTKMMTL 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A A Sbjct: 65 YITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATA 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 I E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFP Sbjct: 125 ICEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFP 184 Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 QY + F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA Sbjct: 185 QYYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIA 244 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + G RN A LL +GF + K+ Sbjct: 245 TVFGGKSTAHRNAKMADLLDLGFREAPENAKV 276 >gi|121608233|ref|YP_996040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verminephrobacter eiseniae EF01-2] gi|121552873|gb|ABM57022.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Verminephrobacter eiseniae EF01-2] Length = 402 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 16/290 (5%) Query: 1 MRQFLVIIAMAMLSNIFP---FLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWN 52 M++ L ++ + F + A+ + P Y LLD V+A D P Sbjct: 14 MKRILSVLRPLAILAALAPAAFGAHAQAPQPPEIAARAYILLDVTANQVLAAKNIDAPVE 73 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTKLMTAY+VF L+ +K L + +S+ A + P S + +++ LK +I Sbjct: 74 QASLTKLMTAYLVFDALRAEKISLQQNLPVSERAWKMPGSRMFIDPTMQVPVEDLLKGMI 133 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V+S ND A+A+AE + T + FV+ MN +K LG+ +T + N G+ + GH +TARD+ + Sbjct: 134 VQSGNDAAMALAEGVGATAENFVKLMNEQAKALGMQSTSYKNPEGLTEPGHLSTARDLGL 193 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 L+ R+ DFPQ+MHY+ K G N N + DG+KTG T A+G+ +V Sbjct: 194 LATRLMKDFPQHMHYYATKQYSYPGTPASNANNRNTLLYRDPTVDGLKTGHTAAAGYCLV 253 Query: 230 ASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 A+A + G + L++++LGA + R S LL+ G+ K + Sbjct: 254 ATAKREFPGLGQRRLLSIMLGAASESARANESQKLLNWGYTAFEAVKLFD 303 >gi|255261606|ref|ZP_05340948.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62] gi|255103941|gb|EET46615.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62] Length = 389 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 140/283 (49%), Gaps = 7/283 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + + A + +IA+ + ++D TG ++ E D PAS++KLM Sbjct: 4 RLVSVFATIAVVVFGASAAIAQNFATQATAAIVIDQTTGTLLMEKNADEALPPASMSKLM 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F + + + L + +S++A Y S K+G + +++ ++ +IV S ND Sbjct: 64 TLYMAFEAVSDGRLRLDEELPVSQHAMNYGGSTMFLKRGERVKVEDLIRGIIVLSGNDAC 123 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F + M ++ LG+ + F N++G Q GH + RD++IL+ R+ Sbjct: 124 AVIAEALSTDGTEAGFGRMMTARARELGMMNSTFTNSNGWPQAGHRMSMRDLSILADRLI 183 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TD+P Y F K K+ N N +G +GADG+KTG T +G+ +V SA QG Sbjct: 184 TDYPTYYPLFSQKEFMFDEKESKNRLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQG 243 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 ++ +I VI G R + S +++ F R K Sbjct: 244 NRRIIFVITGLDSAAARAEESEKIVNWAFRQFVHRDITEAGTK 286 >gi|190891891|ref|YP_001978433.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 652] gi|190697170|gb|ACE91255.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 524 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 2/290 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + L I++MA+ + ++ P Y ++D TG+V+ D PASLTK+M Sbjct: 26 KLLAILSMAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 146 TALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 205 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S++ Sbjct: 206 FPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIV 265 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +V+LG R+ +L++ + R + +I E P Sbjct: 266 SVVLGGTSGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAPAMIETP 315 >gi|220903565|ref|YP_002478877.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867864|gb|ACL48199.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 378 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 5/253 (1%) Query: 18 PFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + + L D + ++ E D PASLTK+++ ++ + + Sbjct: 33 PGQAAPPIPEHGFLETSSAILYDLDHDAILFEQNADQRIAPASLTKVLSMFLALDSVDQG 92 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 K L +T+S+ A+ S ++ ++L+ L + V S ND ++A+AE + + Sbjct: 93 KLSLDNTVTVSRAAAGTGGSRMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTP 152 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FV MN ++ LG+ + F N HG+ G YTTARDM L+ PQ + + Sbjct: 153 AFVAMMNAKAQALGMRDSQFRNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHT 212 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + KG+ N N +G + GADG+KTG+ ASG+N++ +A QG + L+AVILGA D TR Sbjct: 213 ISHKGRVTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTR 272 Query: 253 NKVSASLLSMGFY 265 + LL GF Sbjct: 273 GVEAFRLLDAGFQ 285 >gi|329120772|ref|ZP_08249433.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis ATCC BAA-1200] gi|327460142|gb|EGF06480.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis ATCC BAA-1200] Length = 432 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 95/320 (29%), Positives = 151/320 (47%), Gaps = 9/320 (2%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + A Y + D +G ++ D P PASLTKLMTAY+ F L+ K T Sbjct: 71 PQAAAAPEIAAAAYLVQDLQSGQILTGRDLDKPVEPASLTKLMTAYLAFKALESGKLNAT 130 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +T S+ A S G + + + LK LIV+S ND A+ +AE+L +E+ F + Sbjct: 131 DTLTPSEKAWRAEGSRMFLNAGKPVAVGDLLKGLIVQSGNDAAITLAEALGGSEEGFAKM 190 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN +K LG++ THF NA G+ GH+TT RD+AIL+ I D+P+Y + ++ + Sbjct: 191 MNAEAKRLGMNGTHFTNATGLPGDGHFTTVRDLAILAAAIIRDYPKYYPIYSMQSFKYNN 250 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + PN N + DG+KTG T ++G+N+VAS+ + + +++V++G R S+ Sbjct: 251 IEQPNRNLLLYRDPNVDGLKTGHTNSAGYNLVASSKRNGRRVVSVVVGTESIEARAGESS 310 Query: 258 SLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEVCTT--QKEIINYNTQMK 311 LL+ K + Y+ +E V T E T ++ Sbjct: 311 KLLNWALQAFDTPKAYDAGKAVSAAQVYKGKADTVNVGFAEPVYVTIPHGEGSKVKTVLE 370 Query: 312 EAKDKESHFIDFEKITLLKN 331 + EK +L Sbjct: 371 TV---QPVVAPVEKGQVLGK 387 >gi|144899826|emb|CAM76690.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 7/298 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 V++ A+ + + L+D TG ++ E D P+S++KLMTAY+ Sbjct: 11 FVLVCAALTLGGAAARAETIETQARQAILIDYKTGTILLEKNSDELMVPSSMSKLMTAYL 70 Query: 65 VFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 VF LKE + + +S+ A + S GS+ + + ++ +I++S ND Sbjct: 71 VFEKLKEGSWKMDDQLPVSETAWKRHFKSGGSLMFLPVGSSAKVGDLIRGVIIQSGNDAC 130 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AE+ TE+ F + +++LG+ T NA G H TTARD++IL+ R+ +D Sbjct: 131 SVLAEAHSGTEEAFAEEATRKARDLGMLHTTLRNASGWPDPEHLTTARDLSILARRLISD 190 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y + + G + N N + GADG+KTG T A+G+ +V + +G++ +I Sbjct: 191 FPEYFPIYSEREFVFNGIRQGNRNPLLYGVSGADGLKTGHTEAAGYGLVGTVKRGERRII 250 Query: 241 AVILGALDRNTRNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 VI G R++ SA L+ F N K + + + VP ++ E Sbjct: 251 MVINGLKSMKERSEESARLMEWAFREFDNYALFKPGDMVTDAEVWLGEAANVPLVAGE 308 >gi|255655303|ref|ZP_05400712.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Clostridium difficile QCD-23m63] gi|296451287|ref|ZP_06893027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296880361|ref|ZP_06904324.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296259893|gb|EFH06748.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296428602|gb|EFH14486.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 387 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 150/352 (42%), Gaps = 24/352 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----------NKLPYYTLLDTNTGHVIAENYPDHP 50 M++ +L+ S A L+D +G ++ E Sbjct: 1 MKKLASTALAILLAFTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+MT ++ L L + +S+ AS S + G T +D LK Sbjct: 61 LPPASVTKVMTMLLIVEALDSGDIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+ Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225 A++S + + + GKK NTN + + GA G+KTGFT + Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYIIKD 279 + + ASA +G+ L+A LGA R ++SLL+ GF N K I + D Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 +N V + + +++ K+ + + +K T+L Sbjct: 301 KADENKVKLVAKEDLNALIKKGSSKEFEKKIEIVKNPK---MPIKKGTVLGK 349 >gi|260773274|ref|ZP_05882190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] gi|260612413|gb|EEX37616.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP 69.14] Length = 347 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYP- 90 +D ++G ++AE + +PASLTK+MT+YV+ L L + IS+NA YP Sbjct: 1 MDYHSGKILAEKEMNTKLSPASLTKMMTSYVIGQELNRGNISLDDDVVISENAWAKNYPD 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+++ + + K +I++S ND VA+AE + +E FV MN + +L ++ T Sbjct: 61 SSKMFIEVGTSVKVRDLNKGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLNMTNT 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-T 209 HF N HG+ Y+T DMA+L + D P + + G N N + Sbjct: 121 HFANVHGLDHPELYSTPYDMALLGQALIRDVPDEYALYAEQKFTYNGITQYNRNGLLWDK 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DG+KTG T +G+++V+SA +G+ LIAV++G D N+R S LLS GF Sbjct: 181 SMNVDGIKTGHTTNAGYSLVSSATEGNMRLIAVVMGTKDINSRKTESKKLLSYGFRFFET 240 >gi|158423216|ref|YP_001524508.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Azorhizobium caulinodans ORS 571] gi|158330105|dbj|BAF87590.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Azorhizobium caulinodans ORS 571] Length = 629 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 138/232 (59%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D NTG V+ E D +PASLTK+MT Y++F L+ + L + + +S +A+ Sbjct: 123 AAIVVDGNTGKVLYEENADSLRHPASLTKIMTLYMLFEQLQAGRLKLDSDLPVSAHAASQ 182 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P+ + GST+ +++A+K ++ +SAND AV I E++ TE F + M ++ LG+S Sbjct: 183 SPTKLNLRPGSTIEVEDAIKAVVTRSANDAAVVIGEAIGGTESNFAEMMTRKARALGMSN 242 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F NA G+ G TTARD+++L I+ FP+ YF + +G+ N N + Sbjct: 243 TTFRNASGLPNPGQVTTARDLSVLGRAIQDRFPREYRYFSTRAFVYRGETIGNHNRLMLR 302 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DG+KTG+T ASGFN+V S + D+ L+ V+LG ++R++ AS+L+ Sbjct: 303 MEGVDGIKTGYTNASGFNLVTSLHRDDRFLVGVVLGGSSASSRDQRMASILT 354 >gi|332559150|ref|ZP_08413472.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] gi|332276862|gb|EGJ22177.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] Length = 463 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 10/272 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 V +AM M + PY ++D TG + E + +PASLTK+MT Sbjct: 2 LFVFVAMVM--------AAQSAVAAPYAAIVMDARTGETLYETNSETRLHPASLTKMMTL 53 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A A Sbjct: 54 YITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATA 113 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 I E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFP Sbjct: 114 ICEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFP 173 Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 QY + F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA Sbjct: 174 QYYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIA 233 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + G RN A LL +GF + K+ Sbjct: 234 TVFGGKSTAHRNAKMADLLDLGFREAPENAKV 265 >gi|254293994|ref|YP_003060017.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] gi|254042525|gb|ACT59320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] Length = 380 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 138/282 (48%), Gaps = 8/282 (2%) Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 MR F +V ++ + S P + A Y ++D +TG + D P+ PAS+T Sbjct: 1 MRIFSAFIVSTSLLLGSVYTPAYADALNTSADYAYIMDADTGMALYSKDGDTPFIPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLI 112 K+MTAY+VF +++ + L +S+ A S + GS +++ + L+ +I Sbjct: 61 KIMTAYIVFERIRDGRLTLEDEFVVSETAWREGGAASGGSTMFLELGSKVSVRDLLRGVI 120 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND + IAE++ +++ F + M ++ LGL + F N G+ H +A D+A Sbjct: 121 IQSGNDACIVIAEAISGSQEAFAEEMTRRARELGLDSATFENPTGLYSDNHRISAADLAQ 180 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L++ DFP++ + K G + PN N +G GADG+KTG SG+ +V SA Sbjct: 181 LAYLTIKDFPEFYALYSEKEFTWNGIRQPNRNPLLGEVQGADGLKTGHLEISGYGLVGSA 240 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ + I V+ G R + ++ F + + + Sbjct: 241 VRDGKRRIIVLNGLDSIAERASEARRVMRSAFVDFKVVEVVQ 282 >gi|262372977|ref|ZP_06066256.1| penicillin-binding protein 6 [Acinetobacter junii SH205] gi|262313002|gb|EEY94087.1| penicillin-binding protein 6 [Acinetobacter junii SH205] Length = 382 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 5/271 (1%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 S LS Y L+D TG ++A + PAS+TK+MT+Y++ L + Sbjct: 16 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLLKG 75 Query: 73 KAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + ++++A S T T+ L+ +I++S ND + A+AE + Sbjct: 76 ELTENEQVRMNESAWCRGSSTESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAG 135 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 E F MN +K +G+ THF+N+ G+ GHY+TA+DMA+L+ I D +Y + Sbjct: 136 NEGTFAHMMNQEAKRVGMVNTHFINSTGMPADGHYSTAKDMAVLAQHIIKDSSKYYPIYS 195 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 K G K N N + T DG+KTG T +G+ + S+ +G LI+VI G Sbjct: 196 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTEEAGYCLTTSSKRGPMRLISVIFGTPSM 255 Query: 250 NTRNKVSASLLSMGFYNK--TDRKKINYIIK 278 N R + +LL+ GF N + + N ++ Sbjct: 256 NERASQTRTLLAWGFANFETANVQPANQVLA 286 >gi|217976936|ref|YP_002361083.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] gi|217502312|gb|ACK49721.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris BL2] Length = 614 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 147/261 (56%), Gaps = 1/261 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D N+G + D P +PAS+TK+MT Y++F L++ + L + I IS A+ Sbjct: 81 AAIVVDGNSGEALYARNEDEPRHPASITKVMTLYLLFEQLEQGRLRLDSEIPISARAAAQ 140 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P+ + G T+++D+A+K ++ +SANDIAVAIAE++ E +F M ++ LG+ Sbjct: 141 KPTKLGLRPGRTISVDDAIKAIVTRSANDIAVAIAEAVGGDEDRFADLMTRKARELGMRN 200 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T ++NA G+ TTARD++IL ++ FP+Y YF + G N N + Sbjct: 201 TKYVNASGLPADAQITTARDLSILGRAVQERFPRYYRYFSTRTFYFAGAAIRNHNRLMDR 260 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G DG+KTG+T ASGFN++ S + ++AV++G + +R+++ A L+ N Sbjct: 261 VEGMDGIKTGYTNASGFNLLTSVKRDGHYIVAVVMGGVSAPSRDRIMADLIEDQIGNGAT 320 Query: 270 RKKINYIIKDFYQQNLSNEVP 290 + + +++D Q+ + + P Sbjct: 321 VRTAS-VLRDLPQRPVERDTP 340 >gi|134299097|ref|YP_001112593.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051797|gb|ABO49768.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 437 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 151/289 (52%), Gaps = 7/289 (2%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 A P + L++ +TG VI + P++PAS+TKLM Y++ + Sbjct: 49 ATALTYAPGICNPINLTAKGAILVNQDTGQVIYADQEHQPFHPASITKLMVLYILLENIH 108 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 P+ SK + ++G ++L+ +K ++V SAND AVA+AE + + Sbjct: 109 NGVLHWEDPVQASKKVERINEAQIYLREGEVLSLEEMIKAMVVASANDAAVALAERVAGS 168 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARDMAILSWRIKTDFPQYMHY 187 E FV+ MN + LGL +HF+NA G+ HY +A D+A+L+ + ++P+ + + Sbjct: 169 EAAFVEIMNAKALELGLRNSHFINASGLPASNSYNHYMSAYDIALLAKYLLEEYPEVLEF 228 Query: 188 FQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ I+ +P NTN +G F G DG+KTG+T +G+ +VA+A + Q +I+V+LG Sbjct: 229 SRLTTTTIRNGSFPIANTNSLLGIFQGMDGLKTGYTDRAGWCLVATAQRNGQRMISVVLG 288 Query: 246 ALDRNTRNKVSASLLSMGF--YNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + R + +LL+ GF Y + + +N I ++ Q L+ + + Sbjct: 289 SPSNEIRKANTTALLNYGFQHYQRVNNIYVNGIKCNYIQSPLAVDGTVL 337 >gi|239817881|ref|YP_002946791.1| beta-lactamase [Variovorax paradoxus S110] gi|239804458|gb|ACS21525.1| Beta-lactamase [Variovorax paradoxus S110] Length = 389 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 15/330 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + Y LLD ++A+ D P PASLTKLM+AY+VF L+ KK Sbjct: 23 AAAQVPAPPEIAARSYLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDALRAKKIT 82 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 LT + +S+ A + P S + +++ +K LIV+S ND VA+AE + T + FV Sbjct: 83 LTQTMPVSQRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGGTVEHFV 142 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 + MN +K LG+ T + N G+ GH TTARD++IL+ R+ DFP+ Y+ IK Sbjct: 143 ELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYAIKKYRY 202 Query: 196 KGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGA 246 G N N + DG+KTG T A+G+ ++A+A + + L++++LG Sbjct: 203 PGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAKRDFPNLTGGRRLLSIVLGT 262 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE------VCTTQ 300 R S LL+ G+ + + + + V Sbjct: 263 SGETVRANESQKLLNWGYTAYDAVRLFDAGQPAATPAVWKGKANTLKLGRPEAIVVAVPA 322 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330 TQ+ + F ++ + LK Sbjct: 323 GTASKIKTQVARPDPLVAPFTKYQPVGSLK 352 >gi|218680753|ref|ZP_03528650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 427 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 94/261 (36%), Positives = 141/261 (54%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRTLLAAVLTVTLAVSAPIAALAGSASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPIT+SK A+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPITMSKYAAARPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAVALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSAASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLLS 261 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDDKMAGLLD 257 >gi|120609035|ref|YP_968713.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1] gi|120587499|gb|ABM30939.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1] Length = 393 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y LLD G V+A D P ASLTKLMT Y+VF L+ KK L + + Sbjct: 35 PPEIAARNYLLLDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPV 94 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + P S + +++ +K +IV+S ND +A+AE + T + FV+ MN+ + Sbjct: 95 SERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQA 154 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 + LG+ T + N G+ + GH TTARD+++L+ R+ DFP+YMHY+ K G Sbjct: 155 RALGMKNTAYKNPEGLTEPGHTTTARDLSVLATRLMKDFPEYMHYYSTKHYAYPGTPPSN 214 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRNTRNK 254 N N + DG+KTG T A+G+ +VA++ + + L++++LGA + R Sbjct: 215 GTNRNALLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNIGQRRLLSIVLGAASESARAN 274 Query: 255 VSASLLSMGFYNKTDRKKIN 274 S LL+ G+ K + Sbjct: 275 ESQKLLNWGYTAYDAVKLFD 294 >gi|317486130|ref|ZP_07944975.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6] gi|316922615|gb|EFV43856.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 19/330 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-----------YTLLDTNTGHVIAENYPDH 49 M FL+I A +L+ + + + L+D TG ++ PD Sbjct: 17 MAGFLLIAASLVLAPAAEARNARKAHAAQSTASRQILNVRSAVLMDARTGKILYSQNPDV 76 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 PASLTK+M+ V F ++ K L+ I +S++A+ S + G ++L+ L Sbjct: 77 RIPPASLTKIMSMMVTFDAIRSGKVKLSDQIRVSRHAARQGGSRMGLRAGERVSLNRLLM 136 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + V S ND ++A+AE + + + FV+ MNN ++ +G+S++ F +G+ G YTTARD Sbjct: 137 GMAVSSGNDASMAVAERVGGSGRAFVKMMNNKARQIGMSSSTFKTPNGLPAAGQYTTARD 196 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 MA L + + P + Y +++ L+ +G N N +G GADG+KTG+ ASG+NI+ Sbjct: 197 MARLGYVYLKNNPSALQYHRVRVLKHRGAVTTNKNPLLGACPGADGLKTGWVTASGYNII 256 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 ++ +G+ LIAVILGA R+ L+ GF ++T+ + + + N Sbjct: 257 STVRRGNTRLIAVILGADSAGLRSHEVRRLVEAGFKSRTNGITVASALTKYSYPN----- 311 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESH 319 + +K I N +A + Sbjct: 312 ---KATASSVKKHKIRRNKATAQASRRTGR 338 >gi|167572961|ref|ZP_02365835.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786] Length = 328 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%) Query: 2 RQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R+ L +++ ++ S A + + ++D ++G +AE+ PASLTKL Sbjct: 23 RRILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKL 82 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 MTAY+ LK+ + I+ + + G + + + ++ LIV SA Sbjct: 83 MTAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASA 142 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+ +A+ + + F + MN+ ++ LG+ +HF++ G+ HY+TA D++IL+ Sbjct: 143 NDAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARH 202 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG- 235 + DFP++ + + E N N + DGMKTG T A+G+ +V +A +G Sbjct: 203 LNQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGV 262 Query: 236 -----DQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +IAV+LG R + LL GF + Sbjct: 263 AGSHAKHRVIAVLLGEPTEKQRLADARRLLDWGFAS 298 >gi|170748801|ref|YP_001755061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170655323|gb|ACB24378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 509 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 158/307 (51%), Gaps = 4/307 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLM 60 R+ V +A + I N + L+ D ++G VI P PW PAS+TKLM Sbjct: 7 RRLTVGLAALTGLLGAGLVGIGAANAVTVPILVADVDSGKVIYAQAPTDPWYPASITKLM 66 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T YV +++ K L + ITIS A+ PPS FK G+ +TLDNALK+++VKSAND+A Sbjct: 67 TTYVALDLVRQGKVSLDSMITISAAAAAEPPSKMGFKPGTQLTLDNALKIIMVKSANDVA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI ESL + + F MN T++ +G+ + + N +G+ +T+ARDMA+L+ + D Sbjct: 127 YAIGESLGGSVENFAALMNETAQRIGMHDSRWYNPNGLPDPRQWTSARDMAVLARALIRD 186 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP F I ++ N N +G + G DGMKTGF C+ GFN+VA+A + + ++ Sbjct: 187 FPDSHDLFSISAIQFGRAVMANHNGLLGRYPGTDGMKTGFICSGGFNVVATATRNGRRIV 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 +++G R+ +A L F + D + P++ VC + Sbjct: 247 TIVMGQPSPRERDVKTADLFDYAFGQSAGW---SSPTLDALPASAIPAPPDMRPFVCGGK 303 Query: 301 KEIINYN 307 K + Sbjct: 304 KPPAIED 310 >gi|254511090|ref|ZP_05123157.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium KLH11] gi|221534801|gb|EEE37789.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium KLH11] Length = 389 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 5/253 (1%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A ++D TG V+ D P PAS++KLMT YV F L++ + L + + Sbjct: 24 AFDTTARAAYVIDQKTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDETLPV 83 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNN 140 S++A Y S + +++ L+ +IV S ND V IAE+L +E F + M Sbjct: 84 SEHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGSEAGFARFMTQ 143 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198 ++ +G++ ++F N++G GH + D+A+L+ R+ TDFP+Y F + E G+ Sbjct: 144 RAQQMGMNDSNFANSNGWPAAGHMMSVHDLAVLADRLITDFPEYYPLFAEEEFEFDGRAP 203 Query: 199 -KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 N N + +GADG+KTG T +G+ +V SA QGD+ ++ V+ G R + + Sbjct: 204 SNSRNRNPLLKLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVVFVLSGLDSVGKRAEEAE 263 Query: 258 SLLSMGFYNKTDR 270 ++++ F N +R Sbjct: 264 AVVNWSFRNFVER 276 >gi|241766088|ref|ZP_04764001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii 2AN] gi|241363892|gb|EER59198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii 2AN] Length = 406 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 134/260 (51%), Gaps = 8/260 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y L+D ++A D P ASLTKLMT Y+VF L+ KK L + + Sbjct: 48 PPEIAARTYMLVDVTANQILAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQKLPV 107 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A + P S + +D+ LK +IV+S ND +A+AE + T + FV+ MN+ + Sbjct: 108 SVRAWKMPGSRMFIDPKMQVAVDDLLKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQA 167 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 + LG+ T + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K G Sbjct: 168 QALGMKNTAYKNPEGLTEPGHTTTARDLATLASRLMKDFPEYMHYYSTKQYSYPGTPASN 227 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRNTRNK 254 N N + DG+KTG T A+G+ +VA++ + + L++++LGA N R Sbjct: 228 GNNRNMLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASENARAN 287 Query: 255 VSASLLSMGFYNKTDRKKIN 274 S LL+ G+ K + Sbjct: 288 ESQKLLNWGYTAFDAVKLFD 307 >gi|110633724|ref|YP_673932.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110284708|gb|ABG62767.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 465 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 161/315 (51%), Gaps = 3/315 (0%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTK 58 +R+ I +A+ + F A P Y ++D TG V+ E+ D PASLTK Sbjct: 30 LRKVTNIAVLAVATGAFVLSLAASAAANPKYAGIVIDAKTGQVLYEDSADELRYPASLTK 89 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y+VF + + +T IT SKNAS PP+ G ++T++ A+ LI +SAND Sbjct: 90 MMTLYLVFESMAAGRISKSTSITFSKNASAEPPTKLGVPAGKSITVEQAILALITRSAND 149 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A AIAE L +E+ F + M ++ LG+ +T F NAHG+ + TTARDMA L ++ Sbjct: 150 AATAIAEKLGGSEESFARMMTAKARQLGMKSTTFRNAHGLPNNAQKTTARDMARLGIALR 209 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +PQY YF + GKK N +G GADG+KTG+ ASGFN+V+S G + Sbjct: 210 EHYPQYYDYFSTRSFVFSGKKINGHNNLLGRVKGADGIKTGYINASGFNLVSSVSTGGRQ 269 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNEVPNISEEVC 297 ++AV++G +R+ SL+ + + + I K + +++ ++ Sbjct: 270 IVAVVMGGKTARSRDAHMVSLIERYLPKASTGRGQDLIAKGPAIRPTITDTPAIMASAAA 329 Query: 298 TTQKEIINYNTQMKE 312 ++ + E Sbjct: 330 LPKRAPLPAERPDVE 344 >gi|254452232|ref|ZP_05065669.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter antarcticus 238] gi|198266638|gb|EDY90908.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter antarcticus 238] Length = 450 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 1/276 (0%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + IA + ++D TG ++ D +PASLTK+MT Y+ F ++ + Sbjct: 1 MAALAPIAGNSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAIERGEIS 60 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L ITI+ A+ PPS G + ++ VKSAND A AI +L E F Sbjct: 61 LDDMITITPVAANEPPSKLGLVAGQRIQFRYLVRASGVKSANDAATAIGIALEGNEAAFA 120 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 + M T++ +G+S T F NAHG+ + GH +TARDM +L + DFPQY + F + Sbjct: 121 RRMTATARAMGMSRTTFRNAHGLTESGHLSTARDMTVLGRHMIYDFPQYYNIFSRLTTDA 180 Query: 196 KGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 ++ NTN + + GADG+KTG+T A+GFN+VASA +G + +IA + G RN Sbjct: 181 GVRQVANTNRRFLSAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGSSTAQRNA 240 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 A LL MGF IN Q + S + P Sbjct: 241 RVAELLDMGFARAPTTANINRPSPVPAQGSGSPDAP 276 >gi|238918925|ref|YP_002932439.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri 93-146] gi|238868493|gb|ACR68204.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri 93-146] Length = 387 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 128/264 (48%), Gaps = 8/264 (3%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 F + + L+D TG ++A PD NPASLTKLMT YVV L + + L Sbjct: 22 MAFPLVPPHIDAASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVERALDQGRIGL 81 Query: 77 TTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 ++I +A S K G T+ + ++ +I+ S ND VA+++ + Sbjct: 82 NDRVSIGDDAWATRNPLFKGSSLMFLKPGDHATVSDLIRGIIIDSGNDACVALSDYVSGD 141 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FV+ MN L L THF HG+ G Y++ARD+A+L+ I T Y H++ Sbjct: 142 QADFVRQMNAYVNALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAE 201 Query: 191 KGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD 248 K L G N N + L DGMKTG T ++GFN+VA+++ Q LIAV++GA Sbjct: 202 KSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADS 261 Query: 249 RNTRNKVSASLLSMGFYNKTDRKK 272 R + LL G N + Sbjct: 262 SRGREVQAKKLLLWGDRNFETVQL 285 >gi|309389989|gb|ADO77869.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium praevalens DSM 2228] Length = 378 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 162/334 (48%), Gaps = 15/334 (4%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ ++++I + M+ I P + A K L++ TG V+ E D PAS+ Sbjct: 1 MKKNNVLYILLITIFMVLTILP-TTFAFDIKPESAFLIEAETGQVLFEKNADRKLPPASM 59 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+M + L+E LT +TIS+ A S + + L+ +K + + S Sbjct: 60 TKIMPLLITMEKLEEGSISLTDQVTISRYAESMGGSQIFLAANTQVELEKLIKAVTIASG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND +VAI E + T F+ MN ++ LG+ +T+F N+ G+ HY+TA D++I++ Sbjct: 120 NDASVAIGEYIAGTYSNFIAMMNERAEELGMDSTNFSNSTGLPTTNHYSTAHDISIMARE 179 Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + Q +H+ I I + NTN + + DG+KTG T +G+ + A+A Sbjct: 180 LVK-HSQVLHWASIWTETIDLPNRKAMLVNTNSLINKYPSMDGLKTGHTQEAGYCLTATA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQNLSNEVP 290 +GD LI+V++ R + + LL GF + + RK N I++ N +N+V Sbjct: 239 KKGDVRLISVVMQGETLTAREEATTRLLDYGFNSFSKRKIANSGEQIQNIEVANSANKVA 298 Query: 291 N--ISEEV-CTTQKEIINYNTQMKEAKDKESHFI 321 I+E++ QK N +Q E D + I Sbjct: 299 VGEIAEDLSIMVQKGKENEISQKVEVNDSLTAPI 332 >gi|167567676|ref|ZP_02360592.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147] Length = 328 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%) Query: 2 RQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R+ L +++ ++ S A + + ++D ++G +AE+ PASLTKL Sbjct: 23 RRILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKL 82 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 MTAY+ LK+ + I+ + + G + + + ++ LIV SA Sbjct: 83 MTAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASA 142 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+ +A+ + + F + MN+ ++ LG+ +HF++ G+ HY+TA D++IL+ Sbjct: 143 NDAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARH 202 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG- 235 + DFP++ + + E N N + DGMKTG T A+G+ +V +A +G Sbjct: 203 LNQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGV 262 Query: 236 -----DQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +IAV+LG R + LL GF + Sbjct: 263 AGSHAKHRVIAVLLGEPTEKQRLADAKRLLDWGFAS 298 >gi|221640145|ref|YP_002526407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides KD131] gi|221160926|gb|ACM01906.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter sphaeroides KD131] Length = 463 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 141/265 (53%), Gaps = 1/265 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M + + + ++D TG + E + +PASLTK+MT Y+ F + Sbjct: 1 MLFVFVAMVMAAHSAVAAPYAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQAI 60 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + L + +T++KNA+ PPS K G + L ++ VKSAND A AI E++ Sbjct: 61 QRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGG 120 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFPQY + F Sbjct: 121 SEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIFS 180 Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA + G Sbjct: 181 RRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGKS 240 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKI 273 RN A LL +GF + K+ Sbjct: 241 TAHRNAKMADLLDLGFREAPENAKV 265 >gi|146276594|ref|YP_001166753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] gi|145554835|gb|ABP69448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] Length = 473 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 1/245 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D TG + E +PASLTK+MT Y+ F ++ + L + +T++KNA+ Sbjct: 32 AAIVMDARTGETLYETNARTRLHPASLTKMMTLYITFQAIQRGEISLDSMVTVAKNAAAE 91 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PPS K G + L ++ VKSAND A AI E++ +E F + MN T+K +G++ Sbjct: 92 PPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGGSEAAFTERMNRTAKAIGMTN 151 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVG 208 + F N HG+ GH +TA DM +L R+ DFPQY + F + + NTN + Sbjct: 152 STFKNCHGLTAEGHLSTAYDMNMLGRRLFFDFPQYYNIFSRRTADAGVTTVSNTNRRFLD 211 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + GADG+KTG+T +G+N+ SA +G++ +IA + G RN A LL +GF Sbjct: 212 AYKGADGIKTGYTSPAGYNLTGSAQRGNKRIIATVFGGKSTAHRNAKMAELLDLGFREAP 271 Query: 269 DRKKI 273 K+ Sbjct: 272 ANAKV 276 >gi|238021408|ref|ZP_04601834.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147] gi|237868388|gb|EEP69394.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147] Length = 418 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 6/258 (2%) Query: 20 LSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 L+ AE K P Y + D + + D PASLTKLMTAY+ F L+E K Sbjct: 54 LNAAEALKQPEIAATAYLVRDLQSNQTLVAKNTDQQIEPASLTKLMTAYLAFKALEEGKL 113 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T+S+ A + S K S + + + ++ LIV S ND A+ +AE + +E+ F Sbjct: 114 QPEQKLTVSEKAWKVEGSRMFLKAHSEVPVWDLMRGLIVVSGNDAAITLAEGIAGSEEAF 173 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-QYMHYFQIKGL 193 + MN+ +K LG++ T+F NA G+ H T+ D+AILS I D P +Y + K Sbjct: 174 AKMMNDEAKRLGMTQTYFENATGLPAPKHLTSVNDLAILSNAIIRDLPAKYYEVYSYKSY 233 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 N N + DG+KTG T ++G+N++A++ + ++ ++++++GA R Sbjct: 234 TYNNITQENRNLLLFRDDSVDGLKTGHTSSAGYNLIATSKRNNRRVLSIVIGAASAEARA 293 Query: 254 KVSASLLSMGFYNKTDRK 271 S+ LL+ K Sbjct: 294 TESSKLLNYALQGFDTPK 311 >gi|331085114|ref|ZP_08334200.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407897|gb|EGG87387.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 397 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 33/363 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----------------TNKLPYYTLLDTNTGHVIAE 44 MR L ++ +L + L++ +TG +I E Sbjct: 1 MRTILAVVLSVILCTGTVCAMPPDGKVLQEEVESEKKNELELTAQSAVLMEASTGKIIYE 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 + PAS+TK+MT ++ +++ K L +T+S+ A+ S + G T+ Sbjct: 61 KQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGSQVFLEPGEVQTV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF+N +G+ GH Sbjct: 121 DTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNVRAKGLGMEHTHFVNCNGLDADGHL 180 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGM 216 TTA D+A++S + T P+ Y I I K NTN V + A G+ Sbjct: 181 TTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLSNTNKLVRHYPYATGL 240 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKI 273 KTG T + F I A+A + LIAVI+ A D R K + +LL+ GF D++K Sbjct: 241 KTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNYGFGKCTKYVDKEKG 300 Query: 274 N---YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + ++ + E I + V TT + ++ K+ +K T + Sbjct: 301 GLKAVKVDGGTKEKVRIEPEAIFQYVDTTGANLSEIQKKLV---LKKGLSAPLKKGTTVG 357 Query: 331 NKI 333 + Sbjct: 358 KLV 360 >gi|170747224|ref|YP_001753484.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] gi|170653746|gb|ACB22801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium radiotolerans JCM 2831] Length = 489 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 164/309 (53%), Gaps = 8/309 (2%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D +G + D +PAS+TK+MT Y++F ++ K L + +TIS + Sbjct: 49 NPPYAAMVVDVKSGKTLHAVNEDALRHPASITKVMTLYLLFEQMERGKFALDSDLTISAH 108 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 A+ PS + G T+++++A+K ++ KSAND+A AI E++ +E++F Q M + L Sbjct: 109 AAAQAPSKLGLRPGQTISVEDAIKAIVTKSANDVACAIGENIAGSEERFAQMMTAKAHAL 168 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S TH+ NA G+ TTARD+ +L+ I+ FP Y YFQ + +G+ N N Sbjct: 169 GMSRTHYANASGLPDPEQLTTARDLTVLARAIQDRFPHYYRYFQTRSFAFRGRVIGNHNH 228 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G G DG+KTG+T SGFN++ +A + ++A++LG R+++ A L+ Sbjct: 229 LLGNVQGVDGIKTGYTRDSGFNLMTAAKSEGRQIVAIVLGGKSGAGRDRIMADLVRSSLP 288 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325 +I+ + + ++ +++ V T+ ++ + + + D E+ E Sbjct: 289 RAYAGARISAPVTEVAER---ARPAVVADAVSRTRTQVASADDE-----DVETTGTTGEP 340 Query: 326 ITLLKNKIT 334 + L +K T Sbjct: 341 LDLSPSKTT 349 >gi|46201033|ref|ZP_00055930.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 419 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 128/235 (54%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ PD PASLTK+MT +++F L + + + T S +A+ P Sbjct: 24 IVIDAQTGSVLHAANPDARSYPASLTKVMTLFLLFDELDSGRIRMDSKFTASAHAAAQSP 83 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S + G T++++N + L+ KSAND AV AE + TE KF Q M ++ LG+ T Sbjct: 84 SKLGLEPGETISVENLILALVTKSANDAAVVAAEGVGGTESKFAQMMTRKAQALGMRNTV 143 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA G+ G +T RD AIL+ + P Y YF + +G+ N + + Sbjct: 144 YRNASGLPDTGQVSTVRDQAILARALIRSHPGYYKYFSTRQFVYEGQPINTHNRLMLRYQ 203 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 GADG+KTG+ ASGFN+++SA +GDQ +I V+ G +R+ A LL GF Sbjct: 204 GADGIKTGYIHASGFNLISSAKRGDQRIIGVVFGGATATSRDNHMAQLLDKGFAK 258 >gi|254465451|ref|ZP_05078862.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I] gi|206686359|gb|EDZ46841.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I] Length = 389 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 5/263 (1%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + A ++D T V+ D P PAS++KLMT YV F L++ + L + Sbjct: 22 AAAFDTSARAAYVVDAGTDTVLLSKNSDVPLPPASMSKLMTLYVAFEALRDGRLTLDERL 81 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHM 138 +S++A Y S + +++ L+ +IV S ND V IAE+L TE F ++M Sbjct: 82 PVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYM 141 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 ++++G++A+ F N++G GH + D+A+L+ R+ DFP+Y F E G+ Sbjct: 142 TKRAEDMGMTASTFANSNGWPAAGHRMSVHDLAVLAERLIEDFPEYYPLFAETTFEFDGR 201 Query: 199 ---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 N N + +GADG+KTG T +G+ +V SA QGD+ +I V+ G R + Sbjct: 202 APSNIRNRNPLLRLGIGADGLKTGHTEEAGYGLVGSATQGDRRVIFVVSGLDTERGRAEE 261 Query: 256 SASLLSMGFYNKTDRKKINYIIK 278 + ++++ F T + I Sbjct: 262 AEAIVNWSFRQFTKKTVAKEGIA 284 >gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] gi|99035699|gb|ABF62557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040] Length = 393 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 147/299 (49%), Gaps = 9/299 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + + + + +L+ ++ S A K ++D T V+ D P PAS++K Sbjct: 4 RCISLTCIGVLAGLWIASSTTAVQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT YV F +++ + + + +S++A Y S + +++ L+ +IV S ND Sbjct: 64 LMTLYVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGND 123 Query: 119 IAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 IAE+L TE F ++M ++ LG++ + FMN++G GH + RD+AIL+ Sbjct: 124 ACAVIAEALSPDGTEAGFARYMTRRARELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEH 183 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + DFP++ F + E G+ NT N + +GADG+KTG T +G+ +V SA Sbjct: 184 LIEDFPEFYPMFAEQVFEFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAK 243 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 QGD+ +I VI G R + S ++++ F T + I + + P + Sbjct: 244 QGDRRVIFVISGLNSTPERAEESEAIVNWSFRQFTKKTIAREGIAVEQAEVWMGDSPTV 302 >gi|158423796|ref|YP_001525088.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS 571] gi|158330685|dbj|BAF88170.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS 571] Length = 426 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 5/271 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L+ + A+L A +P TL+D +G ++ E P + K+MTA V Sbjct: 37 LLTVVAALLPLQAARAQTAFQTAVPEATLVDFASGTILFEKNAQGRVAPGGIVKIMTAAV 96 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119 +F ++ K L TP +S+NA S + + + L+ +V S ND Sbjct: 97 IFDQIRAGKITLDTPFYVSENAWRRGGGPSGGAAMFVPVKSQVRVGDLLQGALVVSGNDA 156 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+A+AE L TE +F Q MN + LG+S + F NA G +T ARDMA+L+ I Sbjct: 157 AIALAEGLSGTESEFAQRMNAKAAELGMSGSQFRNATGFADPDQFTNARDMAVLARSIIR 216 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + P+ F + +E K N N + +GADG+ + +G+++V SA+QG+Q L Sbjct: 217 NDPELYKIFAVPDIEWSKIKQRNRNTLLNAGIGADGLHMSWVKDAGYHLVGSAVQGNQRL 276 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 I V++GA R + + LL GF++ + Sbjct: 277 IVVVMGAKTEKERLEEARRLLEWGFHSFQYK 307 >gi|218133227|ref|ZP_03462031.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC 43243] gi|217992100|gb|EEC58104.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC 43243] Length = 400 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 18/281 (6%) Query: 2 RQFLVIIAMAMLSNIFPFL----------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 R+ I+ +++ + + + P L++ +TG + E D Sbjct: 10 RRIAGILLTVIVAVLAAVPVQSMCMYRVNAAEPDVESPSVILMEASTGKTVYEKNADETL 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 +PAS+TK+MT ++F L E K L +T+S++A+ S + G T++ +K + Sbjct: 70 HPASITKIMTLILIFDALSENKITLEENVTVSEHAASMGGSQVFLEAGEKQTVNTMIKCI 129 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 V SAND +VA+AE + +E+ FV MN ++ LG+S THF+N G+ GH TARD+A Sbjct: 130 SVASANDASVAMAEHIWGSEQTFVDKMNERAQGLGMSGTHFVNCCGLDTDGHMMTARDVA 189 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCA 223 I+S + T +PQ Y I I NTN + + A G+KTG T Sbjct: 190 IMSRELITRYPQIHEYSGIWMDTITHNTRRGESEFGLSNTNKLIKQYEWATGLKTGSTGL 249 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + A+A + LIAV++ A + TR K + SLL+ G+ Sbjct: 250 AKCCLSATAEKDGIELIAVVMAAPNSKTRFKDAISLLNYGY 290 >gi|187932841|ref|YP_001886556.1| penicillin-binding protein DacF [Clostridium botulinum B str. Eklund 17B] gi|187720994|gb|ACD22215.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B str. Eklund 17B] Length = 396 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAET------------NKLPYYTLLDTNTGHVIAENYP 47 +++ + + +L+ I P ++ + + L++ TG V+ E P Sbjct: 5 IKRIISFTLIFVLTIILIPIGAVNASMLEDEVKADGMNVEAKSALLIEPTTGKVVYEKNP 64 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D + PAS+TK+MT + + K L +T S+NA + S G +++ Sbjct: 65 DEKFAPASVTKIMTMLLTMEAIDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TA Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184 Query: 168 RDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 RD++++S + P + Y I + N N V F G DG+KTGFT Sbjct: 185 RDISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTN 243 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + I A+A + ++ VI+GA RN+ + LL+ GF +K ++ Sbjct: 244 EAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVS 295 >gi|114765840|ref|ZP_01444933.1| D-alanyl-D-alanine carboxypeptidase family protein [Pelagibaca bermudensis HTCC2601] gi|114541839|gb|EAU44876.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp. HTCC2601] Length = 486 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 96/262 (36%), Positives = 145/262 (55%), Gaps = 2/262 (0%) Query: 25 TNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 PY ++D +G V+ D P +PASLTK+MT Y+ F ++ + + T +TIS Sbjct: 3 ALAAPYAAMVVDARSGEVLHSENADTPLHPASLTKMMTLYLAFEAVEHGELTMDTVVTIS 62 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +NA+ PPS + G + L ++ VKSAND A AI E++ +E F + MN T+K Sbjct: 63 RNAAAEPPSKLGLRSGQKIKLRYLVRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAK 122 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 +G+S T F NA+G+ + GH +TARDM +L + D+PQY + F + NT Sbjct: 123 AMGMSRTTFKNANGLTETGHMSTARDMTLLGRHMIYDYPQYYNLFSRITTHAGMHEVYNT 182 Query: 204 N-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +G + GADG+KTG+T A+GFN+VASA +G + ++ + G +RN A L+ + Sbjct: 183 NRRFLGAYKGADGIKTGYTRAAGFNLVASAERGSERVVTTVFGGRSTASRNAKVAELMDL 242 Query: 263 GFYNKTDRKKINYIIKDFYQQN 284 GF R + K Y N Sbjct: 243 GFKRAKTRVALRAPGKPPYLGN 264 >gi|296447357|ref|ZP_06889284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296255136|gb|EFH02236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 552 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 90/273 (32%), Positives = 149/273 (54%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D NTG + + +PAS+TK+MT Y++F L++ + L +P+ IS +A+ Sbjct: 83 AAIVVDANTGRTLYGRSENELRHPASITKVMTLYLLFEQLEKGRLRLDSPLVISAHAAAQ 142 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P+ G T+ ++NA+K ++ KSANDIAVAIAE++ E F + M + +LG++ Sbjct: 143 SPTKLGLPPGQTIDVENAIKAVVTKSANDIAVAIAENIAGDEDAFAELMTRKAHSLGMTR 202 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH+ NA G+ TTARD+A+L I+ FP Y YF +G+ + N N +G Sbjct: 203 THYANASGLPNDAQITTARDLAVLGRAIQDRFPHYYRYFSTYSFTYRGQAHRNHNHLLGQ 262 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G DG+KTG+T ASGFN+++S +G + ++AV+LG +R+ + A L++ Sbjct: 263 IEGVDGIKTGYTRASGFNLLSSVRRGGRHIVAVVLGGTSGPSRDHIMAGLIAQHIGEGDQ 322 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 + I ++ +V E+ Q E Sbjct: 323 ARTARAITENEPAAPAETDVVAEEEDAPAAQSE 355 >gi|116751475|ref|YP_848162.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Syntrophobacter fumaroxidans MPOB] gi|116700539|gb|ABK19727.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11 [Syntrophobacter fumaroxidans MPOB] Length = 462 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 5/284 (1%) Query: 8 IAMAM-LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 +A+A+ + ++ L+ T ++D + G V+ E D PAS+TK++T Y+VF Sbjct: 12 LALALSVVSVQSVLAAPFTVNARSAMVVDMSNGVVLYEKNADDLIAPASITKVLTLYIVF 71 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 ++E + L + IS A++ S K G+ ++L+ +K + V S ND VA+AE Sbjct: 72 DAIREGRIRLDDRVEISSRAAKTTGSRMGVKAGTRVSLEELIKGMAVVSGNDACVAVAEH 131 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + + FV+ MN ++ LG++++ FM +G+ G TTARD+A LS FP + Sbjct: 132 ISGNVEAFVRKMNAKARELGMNSSRFMTPNGLPAKGQLTTARDIARLSIAYLRRFPDSLT 191 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 ++ + N N + T G DG+KTGF CASG+NI A+A +G+ ++AV+LGA Sbjct: 192 IHSMQAYSYGTSSHHNANRLLATCPGVDGLKTGFVCASGYNITATARRGNTRILAVVLGA 251 Query: 247 LDRNTRNKVSASLLSMGFYNK----TDRKKINYIIKDFYQQNLS 286 R + + LL GF D + DF +Q S Sbjct: 252 PTPGVRLRETTKLLEAGFAEVAPELADMRYATLASDDFGEQRPS 295 >gi|226309602|ref|YP_002769496.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] gi|226092550|dbj|BAH40992.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis NBRC 100599] Length = 438 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 36/367 (9%) Query: 4 FLVIIAMA-----MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 FL + A M+S + ++ N + L++ +TG V+ PD PAS Sbjct: 14 FLSVAVFATAMGGMVSKVEAAPVASQANLQLEAKSAILVEASTGKVLYSKDPDVALPPAS 73 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLL 111 ++K+MT Y+V +K+KK + +S+ A S G + T+ + + Sbjct: 74 MSKMMTEYLVHDAIKQKKMKWDDVVPVSEYAFYIAKISDSSGVYLNLGESFTVKQLYEAM 133 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---------- 161 + SAND V +AE + +E FV+ MN + LG+ T F+ + G+ Sbjct: 134 AIVSANDATVLLAEHIAGSEAAFVELMNKKAAELGMKNTSFVTSTGLPADELGPYSVQTD 193 Query: 162 --GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAV----GTF 210 + +ARD AIL+ + DFP + + + N NW + + Sbjct: 194 QKENLMSARDSAILARALIHDFPDALETSKKPIFTFRTGTPNEWTKKNYNWMLPSLISYY 253 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 G DG+KTG T A+GF +A++ + LI+V++ A + R + L GF N Sbjct: 254 PGVDGLKTGHTDAAGFCFTGTAVRDNMRLISVVMKASTESKRFAETRKLFDYGFGNFKLT 313 Query: 271 KKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K++ N +K F + N V ++ V T + + T + F + Sbjct: 314 KQMDKNVPVKGFETAPVKNGV-EVTVPVVTGSEVNMITKTGTEAKYTPTVTFQELTAPIQ 372 Query: 329 LKNKITK 335 + K Sbjct: 373 QGQVVGK 379 >gi|209884896|ref|YP_002288753.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] gi|209873092|gb|ACI92888.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha carboxidovorans OM5] Length = 587 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 148/282 (52%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + D +PASLTK+MT Y++F ++ K L + + +S++AS P Sbjct: 57 IIVDANSGATLQSTNADATRHPASLTKIMTLYMLFEQIENGKLRLDSQLEVSRHASAQAP 116 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K ++ +SAND +V +AE++ +E+ F + M ++ LG++ T Sbjct: 117 TKLGLRPGQTIRVEDAIKGIVTRSANDASVVVAEAIAGSEEGFAKMMTRKARALGMNNTT 176 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++NA G+ TTARD A L I+ FP+Y YF +G+ N N +G Sbjct: 177 YVNASGLPDSDQITTARDQATLGRAIQDRFPKYYRYFSTSVFTWRGRPIRNHNHLLGRVE 236 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+ ASGFN+V++ +G++ L+ V+LG R+ LL+ + + R+ Sbjct: 237 GVDGIKTGYIRASGFNLVSNIRRGNRHLVGVVLGGRTSGARDATMRKLLATYLDDASTRR 296 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 + I + ++ + + I T EA Sbjct: 297 TVAAITERTPAGTTPAKMEQPVAAKPSPRPAPIQVATAQPEA 338 >gi|297617565|ref|YP_003702724.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297145402|gb|ADI02159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 427 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 13/271 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +++I + + P L++A N + P L++ TG ++ PD PASLTK++T Sbjct: 30 VLLICLVLSLGFDPKLALASENPQVQAPSCVLMEATTGKIVWAKNPDQRMAPASLTKVLT 89 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A + + L I + N + +G TL+N L +++ S ND A+ Sbjct: 90 ALIALE-----RGDLNDKIKVGPNPPRVEGTRVYLVEGEEATLENLLYAMLLNSGNDAAL 144 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE +++ F + MN + LG +HF++ +G+ HYTT+RD+A+++ Sbjct: 145 AIAEHFGGSQQGFARLMNEKAAALGARNSHFVSPNGLSDPNHYTTSRDLAVIARAALQ-N 203 Query: 182 PQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P + K G+ + N N + + GADG+KTG+T + ++ASA + Q Sbjct: 204 PDFRKIVATKTRPWNGQDWQTTLINQNKLLWKYPGADGVKTGYTTEARNTLIASATRNGQ 263 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 S IAV+L + + + +LL GF + Sbjct: 264 SFIAVVLDEPRGSVAEQDAIALLDYGFSHFQ 294 >gi|114570005|ref|YP_756685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] gi|114340467|gb|ABI65747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] Length = 381 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 130/306 (42%), Gaps = 7/306 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 MR + I + P L+ + +LD TG V+ D PAS++K+ Sbjct: 1 MRVYPAIALLLSFVICTPGLAQTTYQTDASHAVILDAETGEVLFSRNADEAMPPASMSKM 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 MT ++ ++ L + +S+ A S + S +D+ L+ +I++ Sbjct: 61 MTVLMLIEAIEAGSLSLDDELPVSEYAWRTGGAASGSSTMFLEVNSRARVDDLLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + +AE++ +E F M + + LGL++ F N+ G H +A D+A L+ Sbjct: 121 SGNDACIVVAEAIGGSEAAFADMMTDRAHELGLTSASFANSTGWPHPDHRISALDLARLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + D P Y + + G + N N +G F GADG+KTG T SG+ +V SA + Sbjct: 181 RILIEDHPDYYDIWSEREFTYNGIRQYNRNPLLGVFSGADGLKTGHTEESGYGLVGSAER 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNEVPNIS 293 + I V G N R + ++ + + + D + E P ++ Sbjct: 241 DGERRIIVFNGMSSNNDRATEAERMMRSALSDYSLYRLFEAGDPVDHQAEVFMGEAPTVA 300 Query: 294 EEVCTT 299 V + Sbjct: 301 LRVSSD 306 >gi|187927291|ref|YP_001897778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J] gi|309780010|ref|ZP_07674763.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA] gi|187724181|gb|ACD25346.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J] gi|308921180|gb|EFP66824.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA] Length = 400 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 15/330 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 A + L D +G V+ D PASLTKLMTAY+VF +++ K Sbjct: 32 AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91 Query: 76 LTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 IT ++ + S + G ++ + LI++S ND A+ +AE++ TE Sbjct: 92 YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN ++ LG+ THF NA G+ HY+TARD++IL+ + DFPQ ++ K Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGA 246 K N N + DG KTG T ++G+ +V SA + ++ L++VI+G Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271 Query: 247 LDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEE--VCTTQ 300 R + S +L+ G+ + K D Y+ + ++E+ + + Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYKAKEALQTPDVYKGQAKSVKLGVAEDKWITVPK 331 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ + +++ +K Sbjct: 332 GAGARLKPVLERKDPLIAPIAQGQQLGTVK 361 >gi|315500037|ref|YP_004088840.1| serine-type d-ala-d-ala carboxypeptidase [Asticcacaulis excentricus CB 48] gi|315418049|gb|ADU14689.1| Serine-type D-Ala-D-Ala carboxypeptidase [Asticcacaulis excentricus CB 48] Length = 464 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 151/266 (56%), Gaps = 2/266 (0%) Query: 13 LSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + + P + + Y ++D +G V D P PASLTK+MT Y+ F + + Sbjct: 40 VLAVSPARAQDPADSDRYAAIVVDAQSGEVFYAMRADSPRYPASLTKIMTLYMAFEEMAQ 99 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + IT+S +A+ PP+ S + G T+T+D A++L+ SAND+A A+ E + +E Sbjct: 100 GRLKPDDVITLSAHAASMPPTKSGLRAGDTITVDMAMRLIAAYSANDLAAALGEHIGGSE 159 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 ++F M ++ LG++ ++F+NA G+ ++ARD A+L+ + DFPQY YF ++ Sbjct: 160 QRFAALMTVKAQELGMTRSNFVNASGLPDSRQVSSARDFAVLARAVMRDFPQYYEYFHVR 219 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 ++ G+ Y N N + + G DGMKTGF A+G+N+VAS +G+ LIAV+LG ++ Sbjct: 220 SVQFNGRTYSNHNPLL-AYPGVDGMKTGFINAAGYNLVASQRKGNHRLIAVMLGGSNKAQ 278 Query: 252 RNKVSASLLSMGFYNKTDRKKINYII 277 R + SL++ GF R K I+ Sbjct: 279 RREHVTSLMNTGFDVFARRDKGEQIV 304 >gi|241661811|ref|YP_002980171.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D] gi|240863838|gb|ACS61499.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D] Length = 400 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 15/330 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 A + L D +G V+ D PASLTKLMTAY+VF +++ K Sbjct: 32 AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91 Query: 76 LTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 IT ++ + S + G ++ + LI++S ND A+ +AE++ TE Sbjct: 92 YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN ++ LG+ THF NA G+ HY+TARD++IL+ + DFPQ ++ K Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGA 246 K N N + DG KTG T ++G+ +V SA + ++ L++VI+G Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEE--VCTTQ 300 R + S +L+ G+ + K D Y+ + ++E+ + + Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYQAKEALQTPDVYKGQAKSVKLGVAEDKWITVPK 331 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ + +++ +K Sbjct: 332 GAGARLKPVLERKDPLIAPIAQGQQLGTVK 361 >gi|144898029|emb|CAM74893.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum gryphiswaldense MSR-1] Length = 424 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 141/259 (54%), Gaps = 1/259 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + + + + P + A ++ ++D + G+V+ PD PASLTK+MT Y++F Sbjct: 27 ALMLMTILVLAPHTAHARDDRYAS-IVVDADNGNVLYAVNPDRRSYPASLTKVMTLYLLF 85 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L++ K L + + +S +A+ PS K G + +++A+ L+ KSAND+AV +AE+ Sbjct: 86 DALEQGKLTLNSRMPVSAHATRQSPSKLNLKVGDRIDVEDAVLSLVTKSANDVAVVVAEA 145 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + +E F + M ++ LG+S+T + NA G+ G +T RD A L+ + +Y H Sbjct: 146 IGGSEDDFAEMMTRKARQLGMSSTTYRNASGLPDMGQISTPRDQATLARALVKHHGRYYH 205 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 YF + +G+ N + + GADG+KTG+ ASGFN++ASA + + ++ V+ G Sbjct: 206 YFSTRQFNWQGQPISTHNRLMLRYQGADGIKTGYINASGFNLIASAKRDGKRIVGVVFGG 265 Query: 247 LDRNTRNKVSASLLSMGFY 265 R+ A +L GF Sbjct: 266 NTAGWRDNNMAQILDKGFA 284 >gi|304321771|ref|YP_003855414.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] gi|303300673|gb|ADM10272.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] Length = 387 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 7/272 (2%) Query: 4 FLVIIAMAMLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 FL I+ + L+++ L + + T P ++D TG V+ E P PAS++ Sbjct: 5 FLSILRLLCLASVVVGLTHGTVSAQSVTTDAPTALIMDGETGDVLFEKNARTPIPPASMS 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMT V + + TP ++S+ A S G+ + L LK +I S N Sbjct: 65 KLMTVAVALDMIATGELSADTPFSVSERAWRTGGSKMFVLVGTEIPLKELLKGIITVSGN 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A+ +AE++ ++ F MN + GL+ +HF N HG+ TA D+A L+ I Sbjct: 125 DAAIVVAENIAGSDAAFADIMNRKAARWGLTGSHFANPHGIPDPEQRMTALDIAKLARHI 184 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +P Y + F + + N N +G GADGMKTG T +GF +V SA + Sbjct: 185 WDSYPDYRYLFSLPEMTWSDITQRNRNPLLG-LEGADGMKTGHTEEAGFGVVGSASRDGV 243 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 V+ G R + LL F + + Sbjct: 244 RRYIVVAGLPTSEARASTARRLLDTAFNDYST 275 >gi|225018728|ref|ZP_03707920.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum DSM 5476] gi|224948456|gb|EEG29665.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum DSM 5476] Length = 395 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 17/280 (6%) Query: 5 LVIIAMAMLSNIFPFLS--------------IAETNKLPYYTLLDTNTGHVIAENYPDHP 50 L + + S+ P + I+ Y L++ +TG V++E+ D Sbjct: 8 LAVSLALLCSSALPVFADGLPEEVDETVAADISAGIPAKSYILMEASTGKVLSESNADEQ 67 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+M ++ + L +T S++A+ + + G M++++ LK Sbjct: 68 MAPASITKIMVMLLLMERIDAGTVTLDDMVTTSEHANSMGGTQIWLEVGEQMSVNDLLKA 127 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 V SAND AVA+AE + +E+ F + MN +K LG+ T F NA G+ GH +TARD+ Sbjct: 128 TAVNSANDAAVALAEYMAGSEEAFAELMNQRAKELGMVNTTFKNATGLDADGHLSTARDI 187 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNI 228 A+++ + P+ Y I ++ NTN V + G +GMKTG T +G + Sbjct: 188 ALMTQELLK-HPKITEYTSIYMDSLRDGTTGLVNTNKMVRFYEGCNGMKTGTTDDAGSCL 246 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +A + +LI+V +G+ R + + +LL GF + + Sbjct: 247 SCTATRDGMTLISVSMGSTTSKERFQSARTLLDHGFASYS 286 >gi|257453878|ref|ZP_05619156.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus SK60] gi|257448805|gb|EEV23770.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus SK60] Length = 395 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 11/341 (3%) Query: 7 IIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +A + + + + +L + L+D +TG V+A+ P+ PASLTK+MT+Y+ Sbjct: 21 FVAASFFATTVQANAAIQQPELDNSAFILIDYDTGTVLAQKNAAQPFPPASLTKMMTSYI 80 Query: 65 VFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + L PI ++ A S +T + + LK +I++S ND + Sbjct: 81 IEQRLLSGALKENEPILMTPEAWCKGSSEESCMYVPVNTTAPVIDMLKGIIIQSGNDASK 140 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+A+ + +E F MN +K +G++ THFMNA G+ Q GH +A D+A L+ I + Sbjct: 141 AMAQHIGGSETTFADLMNEEAKKIGMTHTHFMNATGMPQEGHQASAEDLAKLAQAIIKNS 200 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 +Y + K G N N + T DG+KTG T +G+ +VAS+ +GD LI+ Sbjct: 201 KKYYPIYSQKQFTYNGITQGNRNALLFTDPTVDGLKTGHTDEAGYCLVASSKRGDMRLIS 260 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEE 295 VI+G R S +LL+ GF N + K + +F + N V + + Sbjct: 261 VIMGTKSAQERADQSRNLLNWGFSNFATKIAAPAQKSYGSVPVNFGAVDKVNVVSKGNLQ 320 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 V + + +T + D ++ +++ L + K Sbjct: 321 VLVPKLDQEKISTVVNLPADVKAPLAQGQEVGKLVAMLNGK 361 >gi|84387870|ref|ZP_00990884.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] gi|84377216|gb|EAP94085.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01] Length = 373 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 149/332 (44%), Gaps = 17/332 (5%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 + + Y L+D N+G V+ E NPASLTKLMT+YV ++ Sbjct: 11 SIVPSPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMQRGNISAD 70 Query: 78 TPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + IS+NA S + + + + + + LI++S ND +VAIAE + ++ F Sbjct: 71 DQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAF 130 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN+ + +L L THF NAHG+ Y+T D+A+L I D P + + Sbjct: 131 VDLMNSWATSLKLENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFS 190 Query: 195 IKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G N N + L DGMKTG+T +G+++ +SA QG+ LIAV++GA +R Sbjct: 191 YNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRE 250 Query: 254 KVSASLLSMGFYNKTD-----------RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 S LLS GF +K+ + KD + + E I+ ++K Sbjct: 251 SDSKQLLSYGFRFFDTLNPHQGGDEVAEEKVWFGAKDTLKLGV-AEDTFITLPKSDSKKL 309 Query: 303 IINYNTQMK-EAKDKESHFIDFEKITLLKNKI 333 + + +A E + T+ + Sbjct: 310 TASIELDSELKAPIAEGQTLGVVHYTVDGEDV 341 >gi|121603114|ref|YP_980443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Polaromonas naphthalenivorans CJ2] gi|120592083|gb|ABM35522.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Polaromonas naphthalenivorans CJ2] Length = 402 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 163/350 (46%), Gaps = 25/350 (7%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +L ++ + A+ ++P Y LLD ++A D P PASLTKLM Sbjct: 14 LAATFVLLVSVALPAAHAQAPQVPEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLM 73 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+VF LK KK L +S+ A + P S + +++ +K +IV+S ND Sbjct: 74 TEYLVFDALKSKKITLQQTFGVSQRAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDAT 133 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+AE + T + FV+ MN +K LG+ +T + N G+ + GH TTARD++ILS R+ +D Sbjct: 134 MALAEGVGGTAEHFVELMNQQAKALGMKSTSYKNPEGLTEAGHITTARDLSILSTRLMSD 193 Query: 181 FPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--- 234 FP Y+ Y IK G N N + DG+KTG T A+G+ ++A+A + Sbjct: 194 FPDYIGYSAIKKYRYPGTPATNDTNRNTLLFRDPTVDGLKTGHTNAAGYCMIATAKREFP 253 Query: 235 --------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN---YIIKDFYQQ 283 G + L+A++LG + R S LL+ G+ K + ++ + Sbjct: 254 NLGAAGKPGGRRLLAIVLGTTSDSARATESQKLLNWGYTAFEAVKLFDAGQAVVTPAVWK 313 Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 V E V T TQ+ + + F + + LK Sbjct: 314 GKDAVVKLGRPEAIVVAVTAGSASRLKTQVARPEPLVAPFKKGQPVGSLK 363 >gi|241203383|ref|YP_002974479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857273|gb|ACS54940.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 427 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ + L+ P ++A L +LD TG V+A D +PASLTK+M Sbjct: 1 MRKLWAAVLTVTLAVSAPLAALAGNASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + + Sbjct: 117 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLLS 261 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDAKMAGLLD 257 >gi|86136162|ref|ZP_01054741.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193] gi|85827036|gb|EAQ47232.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193] Length = 391 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 131/273 (47%), Gaps = 7/273 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + +I + P A + +LD T V+ + P PAS++KLMT Sbjct: 7 KLALIGGFGLCLTALPL--AAYDTRARAAFVLDQGTDTVLLSKNAEVPLPPASMSKLMTL 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV F L++ + L + +S +A Y S + +++ L+ +IV S ND Sbjct: 65 YVAFEALRDGRLSLDERLPVSAHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAV 124 Query: 123 IAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 IAE+L TE F ++M + LG+ F N++G GH + RD+ +L+ + D Sbjct: 125 IAEALSPDGTEAGFARYMTKRAHELGMMNASFANSNGWPAIGHRMSMRDLGVLAEHLIED 184 Query: 181 FPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 FPQY F K G+ NT N +G +GADG+KTG T +G+ +V SA+QGD+ Sbjct: 185 FPQYYPLFSEKSFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQGDR 244 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +I V+ G R + + ++++ F + Sbjct: 245 RVIFVVTGLESNKARAEEAEAIVNWSFRQFAKK 277 >gi|301630478|ref|XP_002944344.1| PREDICTED: d-alanyl-D-alanine carboxypeptidase dacC-like, partial [Xenopus (Silurana) tropicalis] Length = 294 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 8/260 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L + + Sbjct: 31 PPEVAARNYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKIALAQKLPV 90 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + P S + +D+ LK +IV+S ND VA+AE + + + FV MN + Sbjct: 91 SERAWKMPGSRMFIDPKMQIPVDDLLKGMIVQSGNDATVALAEGVGGSVENFVHLMNEQA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 + LG++ T + N G+ + GH TTA+D+A+L R+ DFP+YMHY+ + G Sbjct: 151 RALGMTGTSYKNPEGLTEPGHSTTAKDLALLVQRLMQDFPEYMHYYATRHYAYPGTPKSN 210 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRNTRNK 254 N N + DG+KTG+T A+G+ +VA++ + G + L++++LG N R+ Sbjct: 211 GNNRNTLLFRDPTVDGLKTGYTAAAGYCLVATSRREFPQLGQRRLLSIVLGTASENARSN 270 Query: 255 VSASLLSMGFYNKTDRKKIN 274 S LL+ G+ K + Sbjct: 271 ESQKLLNWGYTAFDAVKLFD 290 >gi|258541378|ref|YP_003186811.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256632456|dbj|BAH98431.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01] gi|256635513|dbj|BAI01482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-03] gi|256638568|dbj|BAI04530.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-07] gi|256641622|dbj|BAI07577.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-22] gi|256644677|dbj|BAI10625.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-26] gi|256647732|dbj|BAI13673.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-32] gi|256650785|dbj|BAI16719.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653776|dbj|BAI19703.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter pasteurianus IFO 3283-12] Length = 382 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 146/267 (54%), Gaps = 2/267 (0%) Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R+++ ++A +A+ + + A+ ++D TG V++++ PD PASLTKL Sbjct: 23 LRKWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKL 82 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F+ L+ L + +S +AS PS GS +T++ A+ L+ KSAND Sbjct: 83 MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142 Query: 120 AVAIAE-SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+ E +E +F M + LG+S T F NA G+ TTARD++ L R+ Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +DFP+Y HYF + PN N + + GADGMKTG+T +G N+V SAI+ + Sbjct: 203 SDFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265 L+ V++GA R+ V A+ L GF Sbjct: 263 LVGVVMGASSNTQRSLVMANQLDRGFD 289 >gi|188588716|ref|YP_001921477.1| penicillin-binding protein DacF [Clostridium botulinum E3 str. Alaska E43] gi|188498997|gb|ACD52133.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3 str. Alaska E43] Length = 396 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAET------------NKLPYYTLLDTNTGHVIAENYP 47 +++ + + +L+ I P ++ + + L++ TG V+ E P Sbjct: 5 IKRIISFTLIFVLTIILIPIGAVNASMLEDEVKAEGMNVEAKSALLIEPTTGKVVYEKNP 64 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 D + PAS+TK+MT + + K L +T S+NA + S G +++ Sbjct: 65 DEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TA Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184 Query: 168 RDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 RD++++S + P + Y I + N N V F G DG+KTGFT Sbjct: 185 RDISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTN 243 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + I A+A + ++ VI+GA RN+ + LL+ GF +K ++ Sbjct: 244 EAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVS 295 >gi|86144247|ref|ZP_01062579.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] gi|85837146|gb|EAQ55258.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222] Length = 381 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 7/273 (2%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 F+V A + + SI + Y L+D N+G V+ E NPASLTKLM Sbjct: 2 FIVSNAAIVANTAVAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLM 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+YV +K + IS+NA S + + + + + + LI++S N Sbjct: 62 TSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGN 121 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +VAIAE + ++ FV MN+ + +L L THF NAHG+ Y+T D+A+L I Sbjct: 122 DASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDLYSTPYDIALLGRAI 181 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGD 236 D P + + N N + L DGMKTG+T +G+++ +SA QG+ Sbjct: 182 IRDLPDVYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGE 241 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 LIAV++GA +R S LLS GF Sbjct: 242 MRLIAVVMGASSVKSRESDSKQLLSYGFRFFDT 274 >gi|218886223|ref|YP_002435544.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757177|gb|ACL08076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 481 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 149/300 (49%), Gaps = 5/300 (1%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ET + LLD +TG +I E D P PASLTK+++ YV ++ KA L + +S Sbjct: 75 ETLDVRSAMLLDMSTGRIIYEQNADEPIPPASLTKVLSMYVALDQVRAGKASLKDTVKVS 134 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + A S K+G T+TLD+ L+ + V S ND +VA AE + FVQ MN ++ Sbjct: 135 RRAFSTGGSRMFLKQGETLTLDDLLEGMAVSSGNDASVATAEHIGGNVDNFVQMMNAKAR 194 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LG+ + F N HG+ G +TTARDM LS +P+ + Y + ++ N Sbjct: 195 ALGMKNSVFRNPHGLPAAGQHTTARDMLALSRAYLAQYPEALRYHSTRYIKHNKVITTNK 254 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N +G GADG+KTG+ ASG+N++++ +G L+AV+LGA R + L+ G Sbjct: 255 NPLLGNCEGADGLKTGWVFASGYNLISTVKRGKTRLLAVVLGAETTQARAQEVNRLVEAG 314 Query: 264 FYN-KTDRKKINYIIKDF----YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 F + K ++ ++ D Y NL E+ T K T + AK E Sbjct: 315 FRSVAGGGKSVSTLLADMRPADYALNLHKTNSEAYAELRKTSKATKARKTSVAAAKASED 374 >gi|160942230|ref|ZP_02089539.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC BAA-613] gi|158434787|gb|EDP12554.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC BAA-613] Length = 453 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 11/256 (4%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A P L++ +TG VI E D +PAS+TK+MT ++F L+ K LT + Sbjct: 88 AAVQIAAPSAILMEASTGQVIYEKDADEKRSPASVTKVMTLILIFDALQSGKIQLTDEVV 147 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S +A S ++G T++ +K +++ S ND +VA+AE + +E +FV+ MN Sbjct: 148 TSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIAGSEDEFVRMMNER 207 Query: 142 SKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 + +LG+S THF++ G+ + HYTTARD+AI+S + +PQ +Y I I Sbjct: 208 AASLGMSNTHFVDCCGLTESPDHYTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTK 267 Query: 200 -------YPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 NTN + T G+KTG T + + + A+A + LIA I+ A D Sbjct: 268 QGTKEFGLSNTNKLLKMATNFTVTGLKTGSTSIAKYCLSATAEKDGVRLIAAIMAAPDFK 327 Query: 251 TRNKVSASLLSMGFYN 266 R + +LL+ G+ N Sbjct: 328 ARFADAQTLLNYGYAN 343 >gi|17545046|ref|NP_518448.1| penicillin-binding transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427336|emb|CAD13855.1| probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein [Ralstonia solanacearum GMI1000] Length = 397 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 15/319 (4%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-- 84 + L D +G V+ D PASLTKLMTAY+ +++ K +T ++ Sbjct: 40 AARAWMLTDVTSGQVLGGGNVDERIEPASLTKLMTAYLAVEAVRDGKLKYDQMLTPTETV 99 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + + S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN ++ Sbjct: 100 RSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAER 159 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN N Sbjct: 160 LGMKGTHFMNAAGLPDPNHYTTARDLSILTAALIRDFPEDYKFYSQKEFTYNNIKQPNRN 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSA 257 + DG+KTG T ++G+ ++ SA + + L++V++G R + S Sbjct: 220 RLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESL 279 Query: 258 SLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMK 311 +L+ G+ + K D Y+ ++E+ + + ++ Sbjct: 280 KVLNYGYQFFDTLRLYEAKQALQTPDVYKGQAKTVKLGVAEDKWITVPKGSGGRLKPVLE 339 Query: 312 EAKDKESHFIDFEKITLLK 330 + + +++ +K Sbjct: 340 RKEPLIAPIAQGQQLGTVK 358 >gi|254294362|ref|YP_003060385.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] gi|254042893|gb|ACT59688.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC 49814] Length = 322 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 96/265 (36%), Positives = 143/265 (53%), Gaps = 6/265 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ + +A+++ ++ A K Y ++D +T V+ D P PAS+TK+M Sbjct: 11 IKKLITALALSLC-----VIAPASAEKYASY-VIDIDTAKVLHSRNADDPRFPASITKVM 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+VF LK + MLT + IS+ AS+ PPS K G T++++ A+ L+ KSAND+A Sbjct: 65 TLYMVFDALKAGELMLTDELKISREASKQPPSKLYLKPGETISVETAINALVTKSANDVA 124 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V IAE L +E +F M ++ LGL T F NA G+ +TA D+AIL + D Sbjct: 125 VVIAERLGGSETRFAALMTAKARQLGLKNTRFKNASGLPNAAQLSTAHDLAILGEAMLRD 184 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Y YF + Y N N + + G DG+KTG+T ASGFN++ASA + +I Sbjct: 185 HADYYDYFSTTEFKYGRANYKNHNKLLESVRGVDGIKTGYTRASGFNLLASAERDGHRVI 244 Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265 AV+LG +RN LL F Sbjct: 245 AVMLGGATSKSRNAHVTDLLEAAFD 269 >gi|251780585|ref|ZP_04823505.1| penicillin-binding protein DacF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084900|gb|EES50790.1| penicillin-binding protein DacF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 396 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 18/290 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAET------------NKLPYYTLLDTNTGHVIAENYPDH 49 R + + + P ++ + + L++ TG V+ E PD Sbjct: 7 RIISFTLIFVLTIILMPIGAVNASMLEDQVKAEGMNVEAKSALLIEPTTGKVVYEKNPDE 66 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 + PAS+TK+MT + + K L +T S+NA + S G +++ LK Sbjct: 67 KFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEELLK 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TARD Sbjct: 127 GVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTARD 186 Query: 170 MAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 ++++S + P + Y I + N N V F G DG+KTGFT + Sbjct: 187 ISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTNEA 245 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + I A+A + ++ VI+GA RN+ + LL+ GF +K ++ Sbjct: 246 KYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVS 295 >gi|169832020|ref|YP_001718002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638864|gb|ACA60370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 400 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 11/270 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL++I + L + L+D +TG + E D PAS TK++TA Sbjct: 8 FLILIPLCFLPAAGGAQAGEPEITGEAAVLMDLDTGRFLYEKNADRVMYPASTTKILTAL 67 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V ++ + +T+S+NA S G +L+ L ++ SAND A A+ Sbjct: 68 V---AVRNGYDRMDDRVTMSENAVYAGGSAIWSAPGEEFSLEELLWSALLGSANDAATAV 124 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE LC + ++F MN ++ LG THF+N HG+ HYTTARD+A+++ + P Sbjct: 125 AEHLCGSVEEFSAAMNAEARRLGAWNTHFVNPHGLHDERHYTTARDLALIARAALNE-PL 183 Query: 184 YMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 K ++ NTN + + GA G+KTG+T +G +VA+A + + Sbjct: 184 IREMAGTKTYQLSRADPDALSLLVNTNKLLWRYEGAIGLKTGYTSQAGQCLVAAAERNGR 243 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +++AV+L + N S +LL+ GF Sbjct: 244 TVLAVVLKSEGNNI-WTDSIALLNYGFNRF 272 >gi|134300784|ref|YP_001114280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134053484|gb|ABO51455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 397 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 13/252 (5%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 ++D TG V+ P AS TK+MTA V L + ++S+ A Sbjct: 61 SAYSALVMDAATGQVLFAKNPHQARAIASTTKIMTALVAIEC-----GNLNSATSVSQRA 115 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S+ K +TL+ L +++S ND VAIAE + E FV MN ++ LG Sbjct: 116 AGVEGSSVYLKPNEKLTLEQLLYGALMRSGNDACVAIAEQIAVREDIFVGFMNMKARQLG 175 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPN 202 THF N++G+ HY++A D+A+++ P + K I G + N Sbjct: 176 AKNTHFCNSNGLPNDHHYSSAYDLALITRAALK-NPVFSRIVSTKTHVIPGTEGKRLLSN 234 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + ++ GADG+KTG T A+G +V+SA + + LIAV+L + D R S LL+ Sbjct: 235 TNKMLWSYQGADGVKTGTTNAAGKCLVSSASRDGRRLIAVVLHSDD---RWNESIKLLNY 291 Query: 263 GFYNKTDRKKIN 274 GF R+ ++ Sbjct: 292 GFNRFEQRRVVD 303 >gi|323136276|ref|ZP_08071358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] gi|322398350|gb|EFY00870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC 49242] Length = 393 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 7/275 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++L+ +S++F ++A+ +P L+D T V+ E D PAS K++ Sbjct: 5 RYLIAAVFVAVSSLFSGSALAQAFQTSVPNAILIDAGTNTVLFEKGADDLVTPASTVKIL 64 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKS 115 TA ++F L E + L T+S+ A S K S T+++ L+ L++ S Sbjct: 65 TAEMIFRELTEGRLKLGDVFTVSEYAWRNGGAPAGGSAMFLKVNSQATVEDLLRGLLIDS 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A+ +AE + +E+ FV MN + LGL + F N G T R++A L+ Sbjct: 125 GNDAALVLAEGVAGSEEAFVMRMNKRASELGLVKSRFGNPWGKASDDQKVTPREVAKLAL 184 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + +P + YF K + N N + +GADG+KTG F IV SA Q Sbjct: 185 HVIRTYPDFYKYFGEKEFTWNNIRQQNRNPLLTMSIGADGLKTGNIEKGDFGIVGSANQE 244 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + LI + GA R + + LL GF N ++ Sbjct: 245 GRRLIVAVYGAKTAKERAEEARKLLQWGFRNFEEK 279 >gi|262376081|ref|ZP_06069312.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145] gi|262309175|gb|EEY90307.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145] Length = 382 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 155/353 (43%), Gaps = 17/353 (4%) Query: 1 MRQFLVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M Q + A+ ++ S LS Y L+D TG ++A + PAS+T Sbjct: 1 MTQKTALAALLLVPSFSFAATVLSAPPELNNKSYVLMDYETGQLLASKNENEKLAPASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVK 114 K+MT+Y++ L + + ++++A S T T L+ +I++ Sbjct: 61 KMMTSYIIEQKLLSGELTEDEQVRMNESAWCRGSSAESCMYVPLNGTATALEMLRGIIIQ 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND + A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA L+ Sbjct: 121 SGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTSFVNSTGMPAEGHYSTAKDMATLA 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I D +Y + K G K N N + T DG+KTG T +G+ + S+ + Sbjct: 181 QHIIKDSSKYYPIYAEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR-----KKINYIIKDFYQQNLSNEV 289 G LI+VI GA R + LL+ G+ N + K++ K ++ + ++ Sbjct: 241 GPTRLISVIFGAPTMQERATQTRELLAWGYANFETKNVQPAKQVLAKAKVWFGKEDEVQI 300 Query: 290 PNISE-EVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNKITKK 336 V + + TQ+ A + + TL I++K Sbjct: 301 GLAENFNVTMPKGQANAIKTQLVVQPKLTAPLQPGQVVGKYVATLDGKVISEK 353 >gi|86749513|ref|YP_486009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] gi|86572541|gb|ABD07098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris HaA2] Length = 573 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 92/303 (30%), Positives = 158/303 (52%), Gaps = 1/303 (0%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D NTG ++ PD +PASLTK+MT Y++F L+ K L + + +S + Sbjct: 50 NPAFASIIVDANTGATLSATNPDAVRHPASLTKIMTLYLLFERLEAGKLSLDSEMEVSAH 109 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 AS P+ + G T+ +++A+K L+ +SAND AV IAE++ +E +F + M ++ L Sbjct: 110 ASSQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAETVGGSEAEFARMMTRKARAL 169 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S T + N++G+ TTARD +IL I+ FP+Y YF +G N N Sbjct: 170 GMSRTVYRNSNGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATTTFNYRGASIRNHNR 229 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ Sbjct: 230 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 289 Query: 266 NKTDRKKINYII-KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 R+ + I+ + ++ ++P+ + + + E + + Sbjct: 290 KGATRRTVAAIVERSPSSTQVAEDMPDSRPSPTVQVQGAVQVASAAPEPIETVARPAPPA 349 Query: 325 KIT 327 IT Sbjct: 350 PIT 352 >gi|126729339|ref|ZP_01745153.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37] gi|126710329|gb|EBA09381.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37] Length = 393 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 5/278 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ + A + + + A K ++D TG V+ D PAS++KLM Sbjct: 1 MRKTTRRLLAAGTAILLATQAAAFDTKATAAHVIDVTTGTVLLAKNADEAVPPASMSKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F +++ + L + +S++A Y S + +++ L+ +IV S ND Sbjct: 61 TLYITFEAIRDGRLSLDERLPVSEHAMSYTGSTMFLNTKDRIRVEDLLRGIIVLSGNDAC 120 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +AE+L TE F + M + LG++ + F NA G GH + RD+ +L+ I Sbjct: 121 AVLAEALSPDGTEAGFARLMTQRAHQLGMTNSTFKNASGWPADGHVMSMRDLTLLALHII 180 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 DFP++ F K E G+ N N + +GADG+KTG T +G+ +V SA Sbjct: 181 QDFPEFYPMFGEKKFEFDGRAPSNVNNRNPLLSLNIGADGLKTGHTQEAGYGLVGSAKND 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + +I + G R + S ++++ F ++ + Sbjct: 241 QRRIIFAMTGLATAGERAEQSEAIVNWAFRQFAEQTIV 278 >gi|83308700|emb|CAJ01610.1| conserved hypothetical protein [Methylocapsa acidiphila] Length = 540 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 169/293 (57%), Gaps = 4/293 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 M++ + + + + +++ +G V+ E++ PW PASLTKLMT YV ++E Sbjct: 1 MVAALCAGTTASAPAQAAPAIVVEYPSGAVLYEDHATQPWYPASLTKLMTVYVALKAVRE 60 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 + L TP+ +S A+ PPS F+ G+ +TL NA+K+L+VKSAND+AV IAE + + Sbjct: 61 HRLTLDTPLAVSARAASMPPSKMGFRPGTLVTLGNAMKMLMVKSANDLAVTIAEGISGSV 120 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + F MN + +LGL +HF+N +G+ H ++ARD A+L+ + + FP+ F I Sbjct: 121 EAFADEMNEAAASLGLRQSHFVNPNGLPNPQHISSARDFAVLAIALYSTFPEQADLFSIG 180 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 L + G N N +G + G DGMKTGFTCA+GFN+VASA QG + LIAVILGA + Sbjct: 181 ALRLGGDIITNHNNLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLIAVILGAPNVAQ 240 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304 R +A+L GF + DR + + P+ ++ VC + +++ Sbjct: 241 RTIKAAALFDRGF-SGVDRPTGSVTALAGPT---NAPPPDPNQNVCRKRGKLV 289 >gi|259415214|ref|ZP_05739136.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] gi|259349124|gb|EEW60878.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp. TrichCH4B] Length = 393 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +F+ L+ ++ S A K ++D T V+ D P PAS++K Sbjct: 4 RFISATCFGALAGLWLASSTTALQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT YV F +++ + + + +S++A Y S + +++ L+ +IV S ND Sbjct: 64 LMTLYVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGND 123 Query: 119 IAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 IAE+L TE F ++M ++ LG+S + FMN++G GH + RD+AIL+ Sbjct: 124 ACAVIAEALSPDGTEAGFARYMTRRARELGMSESTFMNSNGWPDQGHEMSVRDLAILAEH 183 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + DFP++ F + G+ NT N + +GADG+KTG T +G+ +V SA Sbjct: 184 LIEDFPEFYPMFSEQEFAFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAK 243 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 QGD+ +I VI G R + S ++++ F T + I + + P + Sbjct: 244 QGDRRVIFVISGMNSTPERAEESEAIVNWAFRQFTKKTIAREGIAIEQAEVWMGDSPTV 302 >gi|115524870|ref|YP_781781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] gi|115518817|gb|ABJ06801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] Length = 418 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 20/290 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------------KLPYYTLLDTNTGHVIAEN 45 +R+ + + ++ A + P L++ ++G V+ E Sbjct: 16 LRRIAMAVLLSFAVGSAGVALAANKSVQGATAAKDDGGYDADAPTAILIEASSGSVLFEK 75 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGS 100 D P+S+ KLMT VF L++ LT +S+N+ S + S Sbjct: 76 NADELRAPSSMMKLMTVEYVFHALQQGDIKLTDEFKVSENSWRKGGAPAGGSTMFAEIHS 135 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 ++++N L+ I++S ND + +AE L E F + + ++ LGL + F N++G+ Sbjct: 136 RVSVENLLRGAIIQSGNDSCMVLAEGLAGGESAFAEKLTQRARELGLPRSTFANSNGLPD 195 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 G+ + R++ L+ + +P Y F + + N N + GADG+KTGF Sbjct: 196 PGNKMSVRELGKLARHLILTYPDYYKIFGEREFTWNKIRQQNRNPLLTMLEGADGLKTGF 255 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 T G+ +V SA Q LI V+ G D + R + + +L GF N R Sbjct: 256 TKDGGYGMVGSAEQNGMRLIVVVNGLEDADDRAQEAKKILEWGFRNFETR 305 >gi|298293245|ref|YP_003695184.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296929756|gb|ADH90565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 461 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 100/283 (35%), Positives = 161/283 (56%), Gaps = 5/283 (1%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 +++ +G V+ + PW PAS+TKLMTAYV F +++ + T +T+S NA Sbjct: 36 ALVIEVESGKVLLADDATKPWYPASITKLMTAYVTFKAIRQGRLTPETLLTVSANAVAQK 95 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS FK G+ +T+DNALK+++VKSAND+AV +AE + + FV MN+T+ LG++ + Sbjct: 96 PSKMGFKAGTQLTVDNALKMMLVKSANDMAVVLAEGVSGSLPAFVAEMNSTAAQLGMTGS 155 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N +G+ + +TARD+A+L+ I DFP+ F+I +++ + N + + Sbjct: 156 HFANPNGLPDPDNVSTARDLAVLARHIFLDFPEQADLFRIPAMKLGTAVIRSYNKLIDRY 215 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GADGMKTGF CASGFN+VASA +G++ L+ V+LG R + +A LL GF + Sbjct: 216 PGADGMKTGFICASGFNLVASAKRGNRHLLVVVLGTQSGRARTEQAALLLERGFQHSWQ- 274 Query: 271 KKINYIIKDFYQ--QNLSNEVPNISEEVCTTQKEIINYNTQMK 311 I + + +N ++ +VC +++ Sbjct: 275 --IFGAMAPTVEALRNEGGAPADMRAQVCGGKRKNTASEDDDS 315 >gi|221069456|ref|ZP_03545561.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni KF-1] gi|220714479|gb|EED69847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni KF-1] Length = 390 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 8/264 (3%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L Sbjct: 27 AAPVPPEIAARNYLLVDVTAGQVLGAKDIDAPVEQASLTKLMSAYVVFDALRAKKITLEQ 86 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S+ A + P S + +++ L +I++S ND +A+AE++ T + FV+ M Sbjct: 87 RMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMM 146 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N+ +K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G Sbjct: 147 NDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYSTKQYSYPGT 206 Query: 199 KY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250 N N + DG+KTG T A+G+ +VA+A + + L++++LG Sbjct: 207 PASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEK 266 Query: 251 TRNKVSASLLSMGFYNKTDRKKIN 274 R S LL+ G+ K + Sbjct: 267 ARANESQKLLNWGYTAFDAVKLFD 290 >gi|146340768|ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146193574|emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium sp. ORS278] Length = 384 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 122/250 (48%), Gaps = 6/250 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P L++ +G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA Sbjct: 22 DAPTAILVEATSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENA 81 Query: 87 SEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140 S S + + + L I++S ND +A+AE + EK F +M Sbjct: 82 WRKGGAPSGTSTMFAALNSKVPVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTK 141 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGLS + F N++G+ G+ T R++++L+ I DFP++ F K + Sbjct: 142 RARELGLSKSTFANSNGLPDPGNKMTVRELSMLARHIILDFPEFYKIFGEKEFTWNKIRQ 201 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L Sbjct: 202 QNRNPLLNAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 261 Query: 261 SMGFYNKTDR 270 GF N R Sbjct: 262 EWGFRNFETR 271 >gi|83943052|ref|ZP_00955512.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36] gi|83954241|ref|ZP_00962961.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1] gi|83841278|gb|EAP80448.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1] gi|83846060|gb|EAP83937.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36] Length = 389 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 136/273 (49%), Gaps = 9/273 (3%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 I A + + + + A + ++D TG V+ D P PAS++KLMT Y+ F Sbjct: 4 IFAATIATLLLALPAQAFETQARAAYVVDQTTGTVLLTKNADEPLPPASMSKLMTLYMAF 63 Query: 67 SFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 ++ K LT + +S++A Y S + +++ L+ +IV S ND Sbjct: 64 EAIERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAV 123 Query: 123 IAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 IAE+L +E F + M ++ +G++ + F N++G GH + RD+ +L+ R+ D Sbjct: 124 IAEALSPDGSEAGFARLMTQRAQQMGMTNSTFANSNGWPAAGHRMSLRDLGLLATRLIED 183 Query: 181 FPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 +PQY F + G+ N N +G +GADG+KTG T +G+ +V SA QGD+ Sbjct: 184 YPQYYPMFSQREFLFDGRAPQNKTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDR 243 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ V+ G R + S S+++ F + R Sbjct: 244 RVVFVLSGLESAAARAQESESIVNWAFRQFSQR 276 >gi|254486408|ref|ZP_05099613.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101] gi|214043277|gb|EEB83915.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101] Length = 389 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 12/280 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + +A++ P + + ++D TG V+ D P PAS++KLM Sbjct: 1 MIRIFAA-TIALILTTLPGHAF--ETRASAAYVIDQTTGTVLLAKNADDPLPPASMSKLM 57 Query: 61 TAYVVFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+ F ++ K LT + +S++A Y S + +++ L+ +IV S Sbjct: 58 TLYMAFEAVERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSG 117 Query: 117 NDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 ND IAE+L TE F + M ++ +G++ + F N++G GH + RD+ +++ Sbjct: 118 NDACAVIAEALSPDGTEAGFARLMTRRAQQIGMTNSTFANSNGWPAAGHRMSMRDLGLVA 177 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 R+ TDFPQY F + G+ N N +G +GADG+KTG T +G+ +V S Sbjct: 178 MRLITDFPQYYPLFSQREFLFDGRAPQNKANRNPLLGLGIGADGLKTGHTQEAGYGLVGS 237 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 A QGD+ +I VI G R + S ++++ F R+ Sbjct: 238 AKQGDRRVIFVISGLETAAERAQESEAIVNWAFRQFAQRE 277 >gi|254456113|ref|ZP_05069542.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter sp. HTCC7211] gi|207083115|gb|EDZ60541.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter sp. HTCC7211] Length = 383 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 11/292 (3%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++ L+ I + + F + K LLD ++ ++ E PD PAS+TK+MT Sbjct: 3 KKILIYIILCLPLTNFANANF--DVKARTAILLDYHSDEILYEKDPDRKIFPASMTKIMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 + + F +K + L +S+NA E S+ G ++++N LK +I+ S ND Sbjct: 61 SIIAFDLIKNGELSLDDKFIVSENAWRLSESGYSSMFIMVGDQISVENLLKGIIISSGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VA+AE + TE +F M +K +G+ T+F N+ G+ + +T RD+ I+S + Sbjct: 121 ACVALAEGIAGTEDEFAILMTEKAKEIGMENTNFSNSSGINSPDNLSTVRDIMIMSKYLI 180 Query: 179 TDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 ++P Y YF+ K N N + L ADG+KTG+ +++ +S Sbjct: 181 KNYPDYYKYFKEKKFTWDRTGGDPITQGNRNPLLYKNLDADGIKTGYLSYEKYSLASSIN 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + + LIAV G +N+R++ S LL+ G N D +I + FY+ ++ Sbjct: 241 RNGRRLIAVGSGFNSKNSRSRESIKLLTYGLTNY-DLVQITKANEPFYKIDV 291 >gi|298291753|ref|YP_003693692.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296928264|gb|ADH89073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 414 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 8/278 (2%) Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +R L+ + + + + P L+ + P L+D +G V+ E D P S+ Sbjct: 18 LRTVLLASFVLFCLAAFVLPALAQTQPEIAAPQAILMDFESGTVLFEKAADTQSAPGSIA 77 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLI 112 KLM+ V+F + E + T +S+ A + S++ + + L+ I Sbjct: 78 KLMSLAVIFREITEGRLSPDTEFKVSEYAWRRGGAPSGGATMFAALNSSIKVSDLLRGAI 137 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + S ND + +AE + E F MN +K LGL+ + F N++G+ TTARDMA Sbjct: 138 IPSGNDATIILAEGISGNELGFSVKMNEEAKRLGLTGSSFHNSNGLSDPDQKTTARDMAK 197 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 ++ I D+P F + N N +G LGADG TG+ GFN+V SA Sbjct: 198 IATHIIRDYPDLYKIFSEPDFLWSKIRQSNRNPLLGMSLGADGFMTGYLKEGGFNLVGSA 257 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +Q +Q LI VILG R + + LL GF + R Sbjct: 258 VQNNQRLIVVILGGKSEKERAEDARKLLEWGFRSFESR 295 >gi|218513170|ref|ZP_03510010.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli 8C-3] Length = 325 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 2/283 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 MA+ + ++ P Y ++D TG+V+ D PASLTK+MT Y+ F Sbjct: 1 MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A A+ E L Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y Sbjct: 121 GGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 R+ +L++ + R + +I E P Sbjct: 241 SGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAPAMIETP 283 >gi|254472440|ref|ZP_05085840.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio sp. JE062] gi|211958723|gb|EEA93923.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio sp. JE062] Length = 447 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 103/267 (38%), Positives = 157/267 (58%), Gaps = 6/267 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +FL + A+A+ S + + + + L+D + G V+ N W PASLTK+MTA Sbjct: 13 RFLAVFAVALGSLLSTARA-----DIAAWLLMDADNGQVLEHNAAFDRWYPASLTKMMTA 67 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV F + ++ + +S+NA PPS FK G+T+TLDNALK+++VKSANDIAVA Sbjct: 68 YVAFQHISRGDMAMSDMVMVSQNALNQPPSKMGFKVGTTITLDNALKMILVKSANDIAVA 127 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + TE+ F+ MN ++ +G+ T+F+N HG+ + TTARDMAIL+ + FP Sbjct: 128 VAERVGGTEENFITMMNANARRMGMLHTNFVNPHGLPDNRQVTTARDMAILARELWNKFP 187 Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 QY Y G+ + + + N + GA+GMKTG+ C SGFN+ SA + +++IA Sbjct: 188 QYRSYMSHPGIRFGRRTFRSGNRDFLLRTAGANGMKTGYICNSGFNVATSATRNGRTVIA 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268 ++LGA R+ + L+ GF T Sbjct: 248 IVLGAASSLERSAFAKKLIDSGFKKTT 274 >gi|326202106|ref|ZP_08191976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] gi|325987901|gb|EGD48727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] Length = 408 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 161/371 (43%), Gaps = 44/371 (11%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKL---------------------------PY 30 M++ + +A++ + P +A+TN+ Sbjct: 1 MKRNSVLAFSLIIAIVLTMLPAAVLADTNEAAVEASAKYDDITVTKLETKTNVLDLRAKS 60 Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L+D +G V++E AS+TK+MT ++ + + +++S+ ++ Sbjct: 61 AVLMDAASGKVLSEKNSHERLAIASVTKVMTMLLIMEAIDSGRFTFDDKVSVSEYSAGMG 120 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++ LG+ T Sbjct: 121 GSQAYMEPGEEFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGMKDT 180 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 FM+ G+ G Y++A D+A++S + P+ + + + + NTN V Sbjct: 181 KFMDCTGLNDDG-YSSAHDVALMSRELVMKHPKVLQFTGKWHDTFRNGTFDLYNTNKLVK 239 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + DG+KTGFT +GFN+ A+ + + L++V+LG D NTR S LL GF N Sbjct: 240 FYANCDGLKTGFTSKAGFNLSATTRRNNLRLVSVVLGEPDSNTRFAESRKLLDYGFANYE 299 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM---KEAKDKESHFIDFEK 325 +I + N+ +P + + +T + K K K + Sbjct: 300 -------VINLDKRGNVVGNIPVKKGNKLSVSA-VYGSDTSIMVSKGQKGKVEKEVALVP 351 Query: 326 ITLLKNKITKK 336 +I +K Sbjct: 352 GLSAPVEINQK 362 >gi|91786161|ref|YP_547113.1| penicillin-binding protein 6 [Polaromonas sp. JS666] gi|91695386|gb|ABE42215.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Polaromonas sp. JS666] Length = 400 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 96/328 (29%), Positives = 153/328 (46%), Gaps = 20/328 (6%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A Y LLD ++A D P PASLTKLMT Y+VF LK KK L + Sbjct: 34 APEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKIDLKQTFGV 93 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A + P S + +++ +K ++V+S ND +A+AE + T + FV+ MN + Sbjct: 94 SERAWKMPGSRMFIDPKMQVPVEDLIKGMVVQSGNDATMALAEGVGGTAEHFVRLMNEQA 153 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200 K LG+ +T + N G+ + GH TTARD++IL+ R+ DFP Y+ Y IK G Sbjct: 154 KALGMKSTAYKNPEGLTEPGHTTTARDLSILATRLMRDFPDYIGYSAIKKYRYPGTPAAN 213 Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----------DQSLIAVILGALD 248 N N + DG+KTG T A+G+ ++A+A + + L+A++LG Sbjct: 214 DTNRNTLLFRDPTVDGLKTGHTEAAGYCMIATARRDFPNLGVGGAPGGRRLLAIVLGTSS 273 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE---VCTTQKE 302 + R S LL+ G+ K + ++ + ++ V E V Sbjct: 274 DSARANESQKLLNWGYTAFEAVKLFDAGQPVVAPSVWKGAASTVKLGRPEAIVVAVAAGS 333 Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330 TQ+ + F+ +++ LK Sbjct: 334 APKVKTQVARPDPLVAPFVKGQQLGTLK 361 >gi|71279808|ref|YP_268450.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H] gi|71145548|gb|AAZ26021.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H] Length = 399 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 4/270 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F I + ++ + A + L+D TG +IAE D PASLTK+MT+Y Sbjct: 25 FSTAIVLIPAAHAITIIPDAPQINAKGFILIDYTTGKIIAEENADTQLAPASLTKIMTSY 84 Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 ++ L+ T + IS+ A S + G+ + + + +IV S ND Sbjct: 85 IIGKELENGNIKNTDKVMISEKAWAKKFPDSSKMFIEVGTEVPVSLLNQGIIVASGNDAC 144 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E F MN ++ LG+S++ F N+HG+ H TT RDMA L+ + + Sbjct: 145 VAMAEHIAGSESAFADLMNAHAEQLGMSSSFFENSHGLDSTSHMTTPRDMATLAIALIRE 204 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ ++ K K N N + L DGMKTG T +G+++V SA +GD L Sbjct: 205 VPEEYAIYKQKSFTYNNIKQYNRNGLLWDKSLNVDGMKTGHTSNAGYSLVTSATKGDMRL 264 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + V++G R S LL+ GF Sbjct: 265 VTVVMGTASERARKVESKKLLNYGFRFFET 294 >gi|291536082|emb|CBL09194.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 348 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 8/239 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ +TG V+ E +PAS+TK+MT ++F L K+ L +T+S+ A+ S Sbjct: 1 MEASTGAVVYEKNSHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQ 60 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+ Sbjct: 61 VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNW 205 N G+ GH T+A D+A++S + T +P+ Y I I NTN Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGF 239 >gi|332982023|ref|YP_004463464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699701|gb|AEE96642.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 394 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 26/350 (7%) Query: 4 FLVIIAMAMLSNIF----------------PFLSIAETNKLPYYTLLDTNTGHVIAENYP 47 F+V + +A+L+ F P + L+D TG ++ E Sbjct: 10 FIVSLCLALLNGAFIGNIAAAHEPNEQDEQPASEDPLKLQSKSAVLMDAATGQLLYEKNA 69 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 AS+TK+MT ++ L + T + +SK+A+ S ++G MT+D Sbjct: 70 HEKLPIASITKIMTMDLIMEALDSGRIKPTDVVRVSKDAASLGGSQIWLEEGEEMTVDEM 129 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 +K + V SAND A A+AE + T++ FV+ MN +K+LG++ T+F N HG+ HY++A Sbjct: 130 MKAIAVNSANDAAAAMAEYIAGTQENFVKMMNEKAKSLGMNDTNFANVHGLDDDNHYSSA 189 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASG 225 D+A++S + Y I ++ NTN + T+ GADG+KTG T + Sbjct: 190 YDVALMSRELAKHDG-IFKYTSIWMDTLRDGETNLANTNKLIRTY-GADGLKTGSTDKAK 247 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDF-YQ 282 + I A+A + D LIAVILG R +A LL GF T + + II++ Sbjct: 248 YCISATAKKDDMRLIAVILGGPTSQVRFDEAAKLLDYGFNTFTINRIVKKGEIIRNIRVT 307 Query: 283 QNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 + S++V I+ + V T + + + +++ + E+ ++ +KI L Sbjct: 308 RGKSDQVNGIAADDLSVLTKKTDTASIEKRIELPETIEAPVVESQKIGKL 357 >gi|220932948|ref|YP_002509856.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Halothermothrix orenii H 168] gi|219994258|gb|ACL70861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Halothermothrix orenii H 168] Length = 388 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 15/300 (5%) Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ + II ++++ + + + L+D +G V+ E D PAS+T Sbjct: 1 MKKIATTVAIIIVSLILMVNNARAGGFDIGVDAAILIDAESGQVLYEKNADKKLPPASIT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MT + + + L + +T+S+ A S + + L + LK + + SAN Sbjct: 61 KIMTLLLTMEEVDKGNISLDSMVTVSQLAESMGGSQIYLAADTRLKLRDLLKAVTIASAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWR 176 D VA+AE++ TE+ FV+ MN ++ LG+ THF N G+ G HYTTARD+AI++ Sbjct: 121 DACVAVAEAVAGTEENFVRWMNKRARELGMKNTHFSNTTGLPTDGEHYTTARDVAIMARE 180 Query: 177 IKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + PQ + + I I + NTN + + G DG+KTG T A+G+ + A+ Sbjct: 181 LIK-HPQVLKWASIWVDYIDLPNGRKAMLTNTNRLINDYPGMDGLKTGHTDAAGYCLAAT 239 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A + LI+VI+ R + +A LL GF + YI+ + + EVPN Sbjct: 240 ARRNGMRLISVIMKGETEREREEATARLLDYGFNSFEK-----YIVLKKGHKVHNIEVPN 294 >gi|118477901|ref|YP_895052.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str. Al Hakam] gi|118417126|gb|ABK85545.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] Length = 450 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 160/371 (43%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ II + L + + AET + L++ N+G ++ E D Sbjct: 33 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 92 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V ++ K + IS+ A + SN + G + T+ + Sbjct: 93 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 152 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 153 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 212 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 213 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 272 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ A R + L GF N Sbjct: 273 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 332 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 RK + + + N ++ Q + +K KD KE ++ Sbjct: 333 FEVRKVNEKDSVVNGHETVR--IANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNK 390 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 391 EQEAPIKKGVT 401 >gi|319407377|emb|CBI81028.1| Penicillin-binding protein [Bartonella sp. 1-1C] Length = 449 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 164/324 (50%), Gaps = 4/324 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ + + + ++S + + E Y ++D NTG + + PASLTK+M Sbjct: 13 KKVGIALTVLVISCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI E L +E+KF Q M ++ LG+ THF NA G+ +Y+TA+DMA L+ ++ Sbjct: 133 TAIGEYLGGSEQKFAQMMTIKARKLGMKNTHFANASGLPDTRNYSTAQDMATLALALRRH 192 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F+ + +GK N N + T G DG+KTG+T SG N+ S +S++ Sbjct: 193 FPEQYKLFKTTHFKFRGKTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRINGRSIV 252 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNISEEVC 297 AV++G NTRN A+LL + + Y++ + + +P + Sbjct: 253 AVVMGGKSSNTRNIHMANLLKQYLPKASPVETNEYLVATARYKLPIGSATPIPLTKNNLI 312 Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321 + EI + T + E + + + Sbjct: 313 NSDDEISSLLTALTEQPNDSNTAV 336 >gi|114569833|ref|YP_756513.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] gi|114340295|gb|ABI65575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10] Length = 450 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 101/270 (37%), Positives = 145/270 (53%), Gaps = 3/270 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R ++ ++A+L P + N +++ NTG V+ + PASLTK+MT Sbjct: 14 RLLILSCSLALLGLSTPAHA---NNSRYAAFVVEENTGVVLHSRRSEAERFPASLTKMMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y++F L+ + L PI IS NA+ PS GST++ +NA++ L+VKSAND+AV Sbjct: 71 LYMLFDALEAGEIGLNDPIRISANAANASPSRLGLAPGSTISAENAIRALVVKSANDVAV 130 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E L E +F + M + +GL+ T F NA G+ TTARDMA L+ + DF Sbjct: 131 AVGERLGGGESRFGELMTARAAEIGLTNTTFRNASGLPNSRQTTTARDMARLAIALHRDF 190 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY YF + G+ Y N N VG G DG+KTG+ ASGFN+V SA + D LI Sbjct: 191 PQYFDYFNEETFRYNGRTYRNHNSLVGRVRGVDGLKTGYIRASGFNVVVSAERDDHRLIT 250 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRK 271 VI+G R+ + L+ F R+ Sbjct: 251 VIMGGPSAAARDAHAEELIEAAFATLEQRQ 280 >gi|294084619|ref|YP_003551377.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664192|gb|ADE39293.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] Length = 437 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 3/291 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R F + + ++ + I+P ++A +++ +G V+ D PASLTK+M Sbjct: 17 LRAFFIFMMLSCGALIWPQQAMASKYAS---IVINAESGRVMYARNADAMRYPASLTKIM 73 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F +K + + + I +SK A+ PS K G +++ + A+ L+ KSAND+A Sbjct: 74 TLYLLFEEIKSGRMDMNSRIGVSKLAASRSPSKLYLKPGQSISAEQAIYALVTKSANDVA 133 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE++ TE+ F + M ++ LG+ T F NA G+ TTARDMA L+ ++ D Sbjct: 134 TAVAEAISGTERNFAKRMTRKARALGMRKTVFKNASGLPHSQQKTTARDMARLAVAMRRD 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ YF + KG+K+ N N + + G DG+KTG+ ASGFN+VAS + LI Sbjct: 194 FPRLYRYFSTQNFNWKGRKFGNHNKLLAHYSGTDGIKTGYINASGFNLVASVKRHGVRLI 253 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 VI G +R+ +L F + + Q L P Sbjct: 254 GVIFGGKTSRSRDAHMMKILDAQFKRAKPAEISAQVAAVDMPQKLPKSPPK 304 >gi|126736702|ref|ZP_01752441.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2] gi|126713817|gb|EBA10689.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2] Length = 382 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 5/284 (1%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 P + A + D TG V+ D P PAS++KLMT Y+ F + + + Sbjct: 4 LAFAPGWAAAFETNATAAYIYDQTTGTVLLSKNADTPLPPASMSKLMTIYMAFEAVADGR 63 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTE 131 + + +S +A+ + S+ +++++ L+ +IV S ND +V +AE+L TE Sbjct: 64 LDINEELAVSSHAASFGGSSMFLDTTDRVSVEDLLRGVIVVSGNDASVVLAEALSPDGTE 123 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F + M + ++ +G+ + F+N+ G GH + D+ IL+ R+ TDFP + F Sbjct: 124 SGFARMMTDRARQMGMMNSTFVNSSGWPAAGHRMSMEDLGILANRLITDFPTFYPLFAET 183 Query: 192 GLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G+ N N + +GADG+KTG T +GF +V SA Q D+ +I VI G Sbjct: 184 EFPFDGRVPSNSRNRNPVLSMGIGADGLKTGHTEEAGFGLVGSAKQDDRRIIFVITGLDS 243 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 R R++ SA +++ F ++ + E+P I Sbjct: 244 RQERSEESAKIINWAFRQFAQKEVAEAGTRIASADVWMGELPTI 287 >gi|85715534|ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85697729|gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 413 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 5/251 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L++ +G V+ E D P+S+ KLMTA VVF+ +++ + LT IS+ Sbjct: 50 ETSAPTAILVEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYVISE 109 Query: 85 NASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 N S S +++ + L I++S ND +A+AE + E F + M Sbjct: 110 NTWRKGGAPSGGSTMFAAINSRVSVQDLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMT 169 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LGL+ + F N++G+ + T R++A+L+ I +P + F + + Sbjct: 170 ARARELGLTRSTFANSNGLPHPDNKMTVRELAVLARHIILTYPDFYKLFGEREFTWNKIR 229 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GADG+KTG+T G+ +V S +Q LI V+ G + R + L Sbjct: 230 QLNRNALLTAMDGADGLKTGYTKEGGYGMVGSVVQNGTRLIVVVNGLESADDRATAAKKL 289 Query: 260 LSMGFYNKTDR 270 L GF N R Sbjct: 290 LEWGFRNFEIR 300 >gi|192291929|ref|YP_001992534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] gi|192285678|gb|ACF02059.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris TIE-1] Length = 585 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 145/253 (57%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++ Sbjct: 54 NPAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEH 113 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 ASE P+ + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ L Sbjct: 114 ASEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARAL 173 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N Sbjct: 174 GMSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNR 233 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ Sbjct: 234 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 293 Query: 266 NKTDRKKINYIIK 278 R+ + I + Sbjct: 294 KGATRRTVAAISE 306 >gi|329114967|ref|ZP_08243722.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum DM001] gi|326695410|gb|EGE47096.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum DM001] Length = 382 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 145/267 (54%), Gaps = 2/267 (0%) Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R+++ ++A +A+ + + A+ ++D TG V++++ PD PASLTKL Sbjct: 23 LRKWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKL 82 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F+ L+ L + +S +AS PS GS +T++ A+ L+ KSAND Sbjct: 83 MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142 Query: 120 AVAIAE-SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+ E +E +F M + LG+S T F NA G+ TTARD++ L R+ Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP+Y HYF + PN N + + GADGMKTG+T +G N+V SAI+ + Sbjct: 203 ADFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265 L+ V++GA R+ V A+ L GF Sbjct: 263 LVGVVMGASSNTQRSLVMANQLDRGFD 289 >gi|90418359|ref|ZP_01226271.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase family [Aurantimonas manganoxydans SI85-9A1] gi|90338031|gb|EAS51682.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase family [Aurantimonas manganoxydans SI85-9A1] Length = 393 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 7/255 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L+D TG V+ E D PASL KLMT V+F LK+ + +S+ Sbjct: 35 ETTAPTAILVDYGTGRVLYEKDADTEIPPASLAKLMTIAVLFDDLKQGRVQRDDRFVVSE 94 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +A S S + +++ ++ +IV+S ND + +AE L + + F MN Sbjct: 95 HAWRTGGASSGGSTMFLPLNSEVAVEDLIRGIIVQSGNDATIVVAEGLSGSVEAFAGRMN 154 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ +GL+ +HF N HG+ + + RD+A L+ + +FP+ F + G K Sbjct: 155 AEAEKIGLTHSHFTNPHGLPDPEQHVSVRDLARLATYLIREFPEDYPIFAEESFTYNGIK 214 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + LGADG+KTG T A+G+ +VASA + + ++ + G R + L Sbjct: 215 QQNRNPLL--DLGADGLKTGHTSAAGYGLVASAERDGRRIVLAMSGMGSTAERASEARRL 272 Query: 260 LSMGFYNKTDRKKIN 274 ++ G + + + Sbjct: 273 MNFGLQDFEEVVLVT 287 >gi|220929171|ref|YP_002506080.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219999499|gb|ACL76100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 408 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 33/300 (11%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKL---------------------------PY 30 M++ + +A+++ +FP + A+TN+ Sbjct: 1 MKRNSVLAFSLIIAIVTAMFPAVVSADTNEAAVEASAKYDDVAVTKLETKTNVLDLRAKS 60 Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L+D +G V+ E AS+TK+MT +V + + +++S+ ++ Sbjct: 61 AVLMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAGRFTFDEKVSVSEYSAGMG 120 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++ LG+ T Sbjct: 121 GSQAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGMKDT 180 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVG 208 FM+ G+ G Y+TA D+A++S + P+ + + + + NTN V Sbjct: 181 KFMDCTGLNDDG-YSTAHDVALMSRELVIKHPKVLQFTGKWHDTFRNGTFDLYNTNKLVK 239 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + DG+KTGFT +GFN+ A+ I+ + LI+V+LG D NTR S LL GF N Sbjct: 240 FYANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLGEPDSNTRFAESRKLLDYGFANYE 299 >gi|331089686|ref|ZP_08338584.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium 3_1_46FAA] gi|330404521|gb|EGG84064.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium 3_1_46FAA] Length = 434 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 14/275 (5%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+ A+ Sbjct: 77 APSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAA 136 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K LG+ Sbjct: 137 SMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGM 196 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------- 199 T+F+N +G+ GH TTARD+A++S + T +PQ Y I + Sbjct: 197 HNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTSEFG 256 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + A G+KTG T + F + A+ + D LIAV++ A R + + Sbjct: 257 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 316 Query: 260 LSMGFYN---KTDRKKIN---YIIKDFYQQNLSNE 288 ++ GF +D K + ++K+ ++N+ E Sbjct: 317 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVE 351 >gi|163814026|ref|ZP_02205418.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759] gi|158450475|gb|EDP27470.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759] Length = 417 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 146/322 (45%), Gaps = 19/322 (5%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 K P L++ +G VI E D PAS+TK+MT + F + + K L + +S Sbjct: 61 DIKSPSAILMEAESGQVIYEKNCDTAMAPASVTKVMTLLLTFEAIDDGKFSLDDTVVVSD 120 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A+ S F+ G T+ + +K +I+ S ND AVA+AE + +E FV MN +K Sbjct: 121 HAASMGGSQCFFESGEEQTVQDMIKCIIIASGNDAAVAMAEKIAGSEPAFVNMMNERAKE 180 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199 LG+ F NA G+ GH +ARD+A++S + T + Y I I K Sbjct: 181 LGMENASFKNACGLDTSGHEMSARDIALMSRELITKHSEIFDYSGIWMDHITHKTARGDS 240 Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 NTN + + GA G+KTG+T + + + A+A + LIAVI+G + RN + Sbjct: 241 RFDLVNTNKFLNMYTGATGLKTGYTSTAKYCMSATAERDGIDLIAVIMGGETKEMRNNDA 300 Query: 257 ASLLSMGF---YNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 LL G+ + TD++ I + K +P + ++ N ++ Sbjct: 301 CHLLDYGYSKCHKYTDKEIIKEKKLSVDKGTSDYVTIKTIPQFEAILLGSE----NADSV 356 Query: 310 MKEAKDKESHFIDFEKITLLKN 331 K+ E +K L Sbjct: 357 SKKIDIPEKITAPVKKGDELGE 378 >gi|90419583|ref|ZP_01227493.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90336520|gb|EAS50261.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 500 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 154/339 (45%), Gaps = 5/339 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +F ++A+ + + E N ++D N G V+ + D PASLTK+M Sbjct: 23 LSRFAGVVAIG-AGMLLSAVGHVEANDKYAGFVIDANNGQVLYNDRADEYRYPASLTKMM 81 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK + ++ + +S A+ PPS K GST+T++ A+ L+ KSAND A Sbjct: 82 TLYMTFDALKSGRISMSDKMPVSAYAAARPPSKIGLKAGSTLTVEEAVYSLVTKSANDAA 141 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V + E +E F M ++ +G+ T F NA+G+ TTARDMA L ++ Sbjct: 142 VVLGEFQAGSESAFAARMTAKARQIGMPKTTFRNANGLPDSEQKTTARDMATLGIALREH 201 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y F + +G++ N N +G G DG+KTG+ ASGFN+V S + +SL+ Sbjct: 202 FPEYYKIFSTRSYSFRGRRLGNHNRVLGRVKGVDGIKTGYINASGFNLVTSIERDGKSLV 261 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEV 296 AV++G +R+ LL+ + R L + P Sbjct: 262 AVVMGGRSGRSRDDHMVELLTRYLPKASTRDAGMLLAARSASPAIVAALPKQGPVPDSRP 321 Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 T+ + EA + + + ++ K Sbjct: 322 AMTEIDQRIAMAYGSEAAPAVARMVQPQSRPIVGRDALK 360 >gi|239833080|ref|ZP_04681409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239825347|gb|EEQ96915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 389 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 182/304 (59%), Gaps = 7/304 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +D TG V A+ W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PP Sbjct: 47 IAVDVATGKVYAQQDAFQRWYPASLTKMMTAYVAFRALQSGQMTLESPVRMTVNAAKEPP 106 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S +K GS MTLD+ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +H Sbjct: 107 SKMGYKPGSVMTLDSALKIMLVKSANDVAVAVAEAVGGTESAFVQRMNAEAQRIGMVGSH 166 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGT 209 F N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ K N N +G Sbjct: 167 FANPNGLHDPQNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGR 226 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F Sbjct: 227 YDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRASAG 286 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEK 325 ++ NL N+ ++ + +C+ + ++ + E K K + H +D + Sbjct: 287 GGATLATLRPTGGGNL-NQATDMRKAICSQEAMADRWDGRDVEGKLKINSPYIHAMDRDP 345 Query: 326 ITLL 329 + + Sbjct: 346 VPVR 349 >gi|118591083|ref|ZP_01548482.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614] gi|118436159|gb|EAV42801.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614] Length = 561 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 140/241 (58%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + A N ++D TG + + D PASLTK+MT Y+VF L+ + L + + Sbjct: 28 ATAMANPKYAGIVVDAKTGKTLYSSSADSYRYPASLTKIMTLYLVFEELEAGRLSLDSNL 87 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 ++S AS PPS K G T+ + +A+ L+ KSAND+A IAE+L +EKKF + M Sbjct: 88 SVSSYASARPPSKLGLKPGGTIKVKDAILALVTKSANDVASVIAENLGGSEKKFAERMTR 147 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 T++ +G+S T F N HG+ +G TTARDMA L I+ FPQY YF+ + + KG+ Y Sbjct: 148 TARQIGMSKTTFRNPHGLPDNGQRTTARDMATLGRAIQERFPQYYGYFKTRAYKYKGRTY 207 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N +G G DG+KTG+ ASGFN+V S + + ++AV++G +RN L+ Sbjct: 208 GNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRDGRHIVAVVMGGKTGASRNAQMTKLI 267 Query: 261 S 261 + Sbjct: 268 N 268 >gi|84686497|ref|ZP_01014390.1| D-alanyl-D-alanine carboxypeptidase [Maritimibacter alkaliphilus HTCC2654] gi|84665410|gb|EAQ11887.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2654] Length = 401 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 5/279 (1%) Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+ + +L+ + + A ++D T V+ E P PAS++K Sbjct: 1 MRRCHVTARLLTTLLAGVIALPAFAFETSARSAYVVDLTTNTVLLEKNAQVPLPPASMSK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT ++F L++ + L T +S+ A + S T++ +K +IV S ND Sbjct: 61 LMTLNMLFEALEDGRVSLDTQFNVSQRAMDMGGSTMFLTTQDRPTVEELIKGIIVLSGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 V +AE L TE F M ++ LG+ + F NA G + D+AIL+ R+ Sbjct: 121 ACVVVAEGLGGTEDAFASMMTQRARALGMENSTFGNASGWPHPAQRMSTEDLAILAERLI 180 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +FPQY HYF I+ G+ N N LGADG+KTG T +G+ +V SA+QG Sbjct: 181 EEFPQYYHYFGIEEFPYDGRAPDNRFNRNPLFDLGLGADGLKTGHTQEAGYGLVGSAMQG 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ ++ V+ G R SA++++ F R + Sbjct: 241 NRRVVLVVSGLDSEAARRSESAAIINFAFRQFVMRTAVE 279 >gi|332798926|ref|YP_004460425.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] gi|332696661|gb|AEE91118.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp. Re1] Length = 415 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 38/316 (12%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFL---SIAETNKLPYY-----TLLDTNTGHVIAENYP 47 MRQ + + + + S + P +T LP L+D +TG V+ E Sbjct: 1 MRQKYTYTISIAVVLFLFSFLIPISFANGAEQTESLPSISGETGILIDASTGKVLYEKNA 60 Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 PAS TK+MTA + K L+ +T K + + ++G +TL+ Sbjct: 61 YTRMEPASTTKIMTAILALE-----KGNLSDVVTTGKQPTLADGTRIYLEEGEQLTLEQM 115 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L +++ S ND A+AIAE + + + FV+ MN ++ +G T F+N +G+ GH TTA Sbjct: 116 LYGMMLNSGNDAAIAIAEHIGGSVEAFVEMMNEKAREIGAKDTTFVNPNGLPAKGHLTTA 175 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFT 221 D+A++S + P++ K EI + N N + + GADG+KTG+T Sbjct: 176 YDLALISRYALLNLPEFRKIVSTKNAEIPWQAQDSDRQLINLNKLLWNYEGADGVKTGYT 235 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G +VASA + LI+VIL + N SA+LL GF N F Sbjct: 236 STAGSTLVASATRNGWQLISVILKSDAINV-WHDSAALLDYGFTN-------------FE 281 Query: 282 QQNLSNEVPNISEEVC 297 ++N+ +E I+EE Sbjct: 282 RKNILSENTLITEEKV 297 >gi|190571728|ref|YP_001976086.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190358000|emb|CAQ55464.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 368 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 135/269 (50%), Gaps = 2/269 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 L + +L IFPF S + K +LD + I E+ P+S++KLMT Sbjct: 2 LSKLVTLLLIFIFPFYSYSYQFRTKAKQAIVLDLASDSFIFEHNSREKMAPSSMSKLMTL 61 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV F +LK + +S+ A E S+ K+G +T+ L+ + + S ND +A Sbjct: 62 YVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDACIA 121 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI TDFP Sbjct: 122 LAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFTDFP 181 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 +Y F + L N N + +G DG+KTG T A G+ I+ SA + D+ + AV Sbjct: 182 EYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRIFAV 241 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + G R + + L+ + +K Sbjct: 242 VNGLDTEKERIEEAKRLIQYSLNHFNTKK 270 >gi|300023249|ref|YP_003755860.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299525070|gb|ADJ23539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 397 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 145/278 (52%), Gaps = 11/278 (3%) Query: 6 VIIAMAMLSNIFP------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 +IA+++L+ + P A T+K P L+D TG + + + D P PAS++KL Sbjct: 13 ALIAISVLTAVGPEANPALAAEAAFTSKAPRAILIDAATGATLFQQHADEPAPPASMSKL 72 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 MT V+F +KE + T T+S NA S + +T+D ++ ++++ Sbjct: 73 MTLAVLFRAMKEGRIQKTDEFTMSVNAWRNGGAPSGTSAMMVPVNTKVTVDELIQGIVIQ 132 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A+ +AE + + F + MN+ +K +GL+ + F NA G+ +ARD+A+L+ Sbjct: 133 SGNDAAMCVAEGMAGSIPAFARMMNDEAKRIGLTKSTFTNASGLPDPQQVMSARDLAVLA 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 I ++P Y F K + ++ N N + +GADG+KTG T A+GF +V SA+Q Sbjct: 193 RYIIDEYPDYYPVFAQKEFLYRKHRFINRNPLLFQNIGADGLKTGHTAAAGFGLVGSAVQ 252 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + LI V+ G + R + + LL+ GF + + Sbjct: 253 DGKRLIVVVSGLEKADQRKEEAVKLLNWGFNSFNTVRL 290 >gi|296534465|ref|ZP_06896895.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296265208|gb|EFH11403.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 305 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 132/236 (55%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D TG + PASLTK+MT Y++F +++ + L+T I +S++A+ Sbjct: 46 SAIVMDAATGEELVSVNAGASRYPASLTKMMTLYMMFEAMQQGRMTLSTRIPVSRHAAGQ 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PS K GS+++ +A+ L+ KSAND+A A+AE L +E +F + M +++LG+ Sbjct: 106 EPSKLGLKPGSSISARDAILALVTKSANDVAAAVAEHLGGSEVQFGRLMTRRAQSLGMRD 165 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F NA G+ TTARDMA+LS + FPQ+ YF + +G+ + N + Sbjct: 166 TSFRNASGLPDANQVTTARDMALLSRALIRHFPQHYAYFNARSFSWRGQTIRSHNRVLAE 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + GADG+KTGF ASGFN+ +SA +G LI V+ G R+ +L GF Sbjct: 226 YDGADGLKTGFIRASGFNLASSAERGGVRLIVVVFGGATSRERDDHVMALFDRGFQ 281 >gi|228995406|ref|ZP_04155077.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] gi|228764332|gb|EEM13208.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock3-17] Length = 444 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 163/370 (44%), Gaps = 39/370 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + +L ++F A + L++ ++G ++ + D Sbjct: 12 KRFIAMVTVLTLLCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+ H Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ + DFP+ + +I +G KYP N NW + Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ R + L GF N Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 +K Y + + + V N ++ T Q + +K +KD ++ +F+ + Sbjct: 312 FEVKKV--YPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKD--AYKTEFKDV 367 Query: 327 TLLKNKITKK 336 + K KK Sbjct: 368 SKDKEAPIKK 377 >gi|323705335|ref|ZP_08116910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535237|gb|EGB25013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 381 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 22/287 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ LV++ + + P AE K P ++D +G ++ E AS Sbjct: 1 MKKILVLV-LIFTFLMTPTNIEAENLKPPQIAAKAAIVMDQKSGRILFEKNISEKLPMAS 59 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MT + + L +T+SK A+ S+ G +++ N L L++ S Sbjct: 60 TTKIMTLLLALEY-----GNLNDIVTVSKKAASVGGSSIWLSPGEKISMINLLYGLMLNS 114 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAIL 173 ND A AIAE + + KFV+ MN +K +G T+F+ G+ HYTTA D+A++ Sbjct: 115 GNDAATAIAEHISGSVDKFVELMNKKAKEIGAYNTNFVTPSGLDIGIDNHYTTAYDLALI 174 Query: 174 SWRIKTDFPQYMHYFQIKGLE--IKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFN 227 + ++ ++ K GK+Y N N + + GADG+KTGFT +G Sbjct: 175 TRYAFNNYNKFAEIVSTKEKTIPWDGKEYDRYLRNKNKMLWQYEGADGVKTGFTNKAGRC 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +VASA + Q LI+V+L + + + +L F N T K I+ Sbjct: 235 LVASASRNGQRLISVVLNSGPM---WEDTQKILDYSFANYTPIKIIS 278 >gi|229026963|ref|ZP_04183283.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228734350|gb|EEL85024.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] Length = 453 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++ A +P L++ N+G ++ E D Sbjct: 23 KRFIAIVTVLTLFCSMIVTFGRASAETVPAIDVEAGSAILVEANSGKILYEKNADESLAI 82 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 142 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 143 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 202 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I G KYP N NW + Sbjct: 203 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQNGGKYPIDMTNFNWMLKGL 262 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 263 IKEYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 +K Y + + + V N ++ Q + K KD KE + Sbjct: 323 FEVKKV--YGKESVVKGYETVRVANAKDKDVVVQTKQAILLPIPKSNKDVYKKEFKVSNE 380 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 381 EQEAPIKKGVT 391 >gi|15895333|ref|NP_348682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15025050|gb|AAK80022.1|AE007709_6 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325509478|gb|ADZ21114.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 404 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 135/253 (53%), Gaps = 6/253 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + LL+ +TG +I E + PAS+TK+MT + + K LT +T+S+NA Sbjct: 50 EAKSAILLEPSTGAIIYEKNSHEKFAPASVTKIMTMLLTMEAVDSGKIKLTDKVTVSENA 109 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S+ G T++ LK + + S ND AVA+AE L +++ FV MN ++ +G Sbjct: 110 KKMGGSSMLLDTGEVRTVEELLKGIAIASGNDAAVAMAEYLGGSQENFVNMMNKKAQEIG 169 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP---- 201 + T F N G+ GH TTA D++++S + P+ + + I +G+K P Sbjct: 170 MKDTSFKNCTGLNADGHMTTAYDISLMSRELLK-HPKILKFTGTYMETISEGRKTPIALV 228 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V F G DG+KTGFT + + I A+A + + ++A+I+GA RN+ ++ L++ Sbjct: 229 NHNKLVRFFKGCDGLKTGFTDEAKYCISATACKDNVRMLAIIMGAPTYKVRNRDASMLMN 288 Query: 262 MGFYNKTDRKKIN 274 GF T +K + Sbjct: 289 YGFSKFTAKKVVE 301 >gi|150016747|ref|YP_001309001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149903212|gb|ABR34045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 396 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 6/253 (2%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L++ +G ++ E D + PAS+TK+MT + + K L +T S+NA Sbjct: 44 EARSALLMEPMSGKILYEKNADEKFAPASVTKIMTMLITMEGVDSGKIKLDDKVTCSENA 103 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S G T++ LK + + S ND AVA+AE L TE++FV MN ++ LG Sbjct: 104 KKMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTEQEFVNMMNKRAQELG 163 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP---- 201 + T F N +G+ GH +TA+D+AI+S + P+ + Y I +G+K P Sbjct: 164 MVNTTFKNCNGLPADGHMSTAKDIAIMSKELLK-HPKVLKYTGTYMDNISEGRKSPIELV 222 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N V F G DG+KTGFT + + I A+A + +++VI+GA RN+ + LL+ Sbjct: 223 NHNKLVRFFEGCDGLKTGFTDEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDAGVLLN 282 Query: 262 MGFYNKTDRKKIN 274 GF +K ++ Sbjct: 283 YGFSKYEGKKLVS 295 >gi|39936213|ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris CGA009] gi|39650068|emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas palustris CGA009] Length = 585 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 145/253 (57%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++ Sbjct: 54 NPAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEH 113 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 ASE P+ + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ L Sbjct: 114 ASEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARAL 173 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N Sbjct: 174 GMSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNR 233 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ Sbjct: 234 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 293 Query: 266 NKTDRKKINYIIK 278 R+ + I + Sbjct: 294 KGATRRTVAAISE 306 >gi|171704678|gb|ACB54658.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa] Length = 417 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 32/308 (10%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+ Sbjct: 36 PPSLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTV 95 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 ++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T+ Sbjct: 96 NENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETA 155 Query: 143 KNLGLSATHFMNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQI 190 + +G+ T+F+N+ G+ + TARD A L+ I D P Y + I Sbjct: 156 QKMGMKNTYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTI 215 Query: 191 KGLEIK---GKKYPNTNWAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGD 236 + + + N NW + + G DGMKTG T +G +A + Sbjct: 216 QSYKFRPTDKAPIINYNWMLEENKNITNFRKFAYPGLDGMKTGHTNNAGNCFTGTAERNG 275 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQNLSNEVP 290 LI+V++GA R +A +L+ GF N ++ + + + EVP Sbjct: 276 MRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVVAPKTVVKGVENVPVTKGTETEVP 335 Query: 291 NISEEVCT 298 ++++ + Sbjct: 336 IVTKDAVS 343 >gi|303325746|ref|ZP_07356189.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio sp. 3_1_syn3] gi|302863662|gb|EFL86593.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio sp. 3_1_syn3] Length = 375 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 150/317 (47%), Gaps = 15/317 (4%) Query: 16 IFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 I P ++A P+ L D + ++ E D PASLTK+++ ++ Sbjct: 30 IRPDRAVAAPAVPPHGFVGVCSAILYDLDNDAILFEQNADEHIPPASLTKVLSMFLALDH 89 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + A + + +S+ A+ S + + L+ L + V S ND ++A+AE + Sbjct: 90 ISAGHAAFDSVVPVSRAAARTGGSRMGLRNREQVPLEELLMGMAVSSGNDASMAVAEFVG 149 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 + FV MN ++ LG+ + F N HG+ G YTTARDM L+ +P + + Sbjct: 150 GSAPAFVNMMNVKARTLGMRDSRFRNPHGLPAQGQYTTARDMLTLARAYLRAYPWALKFH 209 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 L +G+ N N +G + GADG+KTG+ ASG+N++ +A +GD+ L+AVILGA D Sbjct: 210 NTHVLNHQGRVTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASRGDKRLLAVILGAPD 269 Query: 249 RNTRNKVSASLLSMGFYNKTDRKK-----INYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 R + LL GF ++ + + ++ Y+ +L + Q E Sbjct: 270 VRVRGTEACRLLDAGFQVCGNQAVSVAAALTQMPQENYRLDLRKTAHEAGRQYAQAQPEA 329 Query: 304 ---INYNTQMKEAKDKE 317 + TQ K AK+K+ Sbjct: 330 RKQAKHGTQSKYAKNKK 346 >gi|229184724|ref|ZP_04311923.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|228598738|gb|EEK56359.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 429 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 160/371 (43%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ II + L + + AET + L++ N+G ++ E D Sbjct: 12 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V ++ K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 RK + + + N ++ Q + +K KD KE ++ Sbjct: 312 FEVRKVNEKDSVVNGHETVR--IANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNK 369 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 370 EQEAPIKKGVT 380 >gi|288957533|ref|YP_003447874.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] gi|288909841|dbj|BAI71330.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510] Length = 474 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 129/233 (55%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+ + D +PASLTK+MT Y+ F L++ + L + +S A P Sbjct: 88 IVVDARTGQVLIDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMSP 147 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ ++ A+ L+ KSAND AV +AE+L TE +F + M ++ LG+ T Sbjct: 148 TKLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHTV 207 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA G+ TTARD A LS + D +Y YF + G+ PN N + + Sbjct: 208 YRNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRYE 267 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTG+T ASGFN+ ASA++ + L+ V+LG +R+ A+LL F Sbjct: 268 GMDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALLDQAF 320 >gi|220927940|ref|YP_002504849.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] gi|219998268|gb|ACL74869.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium cellulolyticum H10] Length = 401 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 14/293 (4%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A ++D +G V+ E + AS TK+MTA V + + + + Sbjct: 52 APRVSAGAAIVMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDGE-----DVIV 106 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 SK A+ S K G L N L L+++S ND A+AIAE + + + F + MN + Sbjct: 107 SKKAASIWGSRVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAEMMNRKA 166 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 +G + T+F+ HG+ HY+T D+A+++ ++ K +G N Sbjct: 167 AEIGATNTNFVTPHGLDAPQHYSTPYDLALITQYALK-NKKFCKIVSTKSSTFEGNPINN 225 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 TN + + GADG+KTG+T +G +V SA +I+V+L R+ R + S LL Sbjct: 226 TNEMLSLYPGADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRAQSSKILLDY 285 Query: 263 GFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 F N KK I + + LSN V +C+ + I + Sbjct: 286 AFGNYKIYEYLKKGGQISQVGIHKGLSNAV-----GICSDKDISIPLKKDEAD 333 >gi|153953878|ref|YP_001394643.1| DacA2 [Clostridium kluyveri DSM 555] gi|219854493|ref|YP_002471615.1| hypothetical protein CKR_1150 [Clostridium kluyveri NBRC 12016] gi|146346759|gb|EDK33295.1| DacA2 [Clostridium kluyveri DSM 555] gi|219568217|dbj|BAH06201.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 403 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNK-------------LPYYTLLDTNTGHVIAENYPDHP 50 ++ + + + S + ++ E +K L++ +G +I E + Sbjct: 15 LIMFLIIGLGSTVVKAKALTEEDKQEIKSIKADLSINAKSALLMEPTSGKIIFEKNANEK 74 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+M + L K L+ +T+S+NA + S+ G ++++ +K Sbjct: 75 LEPASVTKIMDMLLTMEALDSGKISLSDKVTVSENAKKMGGSSMLLDTGEVRSVEDLIKG 134 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + + S ND AVA+AE L TE+ FVQ MN +K LG++ T F N G+ Q GHYTTA D+ Sbjct: 135 IGIASGNDAAVAMAEYLGGTEEAFVQLMNKRAKELGMNNTQFKNCTGLSQEGHYTTAYDI 194 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASG 225 A++S + P + Y I +G+K P N N V F G DG+KTGFT ++ Sbjct: 195 ALMSSELLK-HPNILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTDSAK 253 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + I A++++ ++AV++G+ RNK ++ L++ GF T Sbjct: 254 YCISATSVRDGARMLAVVMGSPTYKERNKEASMLMNYGFSKYTS 297 >gi|333006637|gb|EGK26136.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella flexneri VA-6] Length = 269 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 11/260 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R A L F + A + + L+D +G V+AE D +PASL Sbjct: 8 LRALAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASL 67 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKL 110 TK+MT+YVV LK K LT +T+ K+A S K G +++ + K Sbjct: 68 TKIMTSYVVGQVLKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKG 127 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 +I++S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDM Sbjct: 128 VIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDM 187 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 A+L + D P+ + K + PN N + + L DGMKTG T +G+N+V Sbjct: 188 ALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLV 247 Query: 230 ASAIQGDQSLIAVILGALDR 249 ASA QGD LI+V+LGA Sbjct: 248 ASATQGDMRLISVVLGAKTE 267 >gi|228989223|ref|ZP_04149217.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] gi|228770498|gb|EEM19068.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus pseudomycoides DSM 12442] Length = 444 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 39/370 (10%) Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L A + L++ ++G ++ + D Sbjct: 12 KRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+ H Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ + DFP+ + +I +G KYP N NW + Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ R + L GF N Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 +K Y + + + V N ++ T Q + +K +KD + +F+ + Sbjct: 312 FEVKKV--YPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKD--VYKTEFKDV 367 Query: 327 TLLKNKITKK 336 + K KK Sbjct: 368 SKDKEAPIKK 377 >gi|225864479|ref|YP_002749857.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102] gi|225790585|gb|ACO30802.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102] Length = 424 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 160/371 (43%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ II + L + + AET + L++ N+G ++ E D Sbjct: 7 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V ++ K + IS+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 127 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 186 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 187 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ A R + L GF N Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 RK + + + N ++ Q + +K KD KE ++ Sbjct: 307 FEVRKVNEKDSVVNGHETVR--IANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNK 364 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 365 EQEAPIKKGVT 375 >gi|254719233|ref|ZP_05181044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|265984229|ref|ZP_06096964.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306837982|ref|ZP_07470840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] gi|264662821|gb|EEZ33082.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306406906|gb|EFM63127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] Length = 472 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 137/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + PD PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVIDANTGKTLFSANPDAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKNTRIPVSAYAASRPPTKMGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|86357827|ref|YP_469719.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CFN 42] gi|86281929|gb|ABC90992.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CFN 42] Length = 525 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 2/290 (0%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + L I++M + + ++ AE Y ++D TG+V+ D PASLTK+M Sbjct: 26 KLLAILSMTVTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+ E L +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 146 TALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 205 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S++ Sbjct: 206 FPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIV 265 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +V+LG R+ +L++ + R + ++ E P Sbjct: 266 SVVLGGASGPARDAQMRNLIATYLPKASSRGGSSQLVAQTAPAPAMIETP 315 >gi|260754913|ref|ZP_05867261.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260675021|gb|EEX61842.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] Length = 461 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 5/265 (1%) Query: 1 MRQF----LVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L++ A+ S + ++A+ + ++D NTG + D PAS Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 ++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLL 260 + L+AV++G +R+ A L+ Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|148981388|ref|ZP_01816384.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] gi|145960880|gb|EDK26210.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3] Length = 278 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 5/261 (1%) Query: 6 VIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A S P + A + L+D ++G V+AE + +PASLTK+MT+YV Sbjct: 18 LSATIATSSFAAPIVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + L+ L + IS+NA S + G+T+ ++ + +I++S ND V Sbjct: 78 IGQELERGNINLNDDVVISENAWAKNFPDSSKMFVEVGTTVKVEELNRGIIIQSGNDACV 137 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L + D Sbjct: 138 AMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDV 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P + K G N N + + DG+KTG T +G+++V+SA +G L+ Sbjct: 198 PDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLV 257 Query: 241 AVILGALDRNTRNKVSASLLS 261 AV++G + N R S LLS Sbjct: 258 AVVMGTKNANARKTESKKLLS 278 >gi|153814787|ref|ZP_01967455.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756] gi|317500310|ref|ZP_07958535.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847818|gb|EDK24736.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756] gi|316898251|gb|EFV20297.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium 8_1_57FAA] Length = 415 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 14/275 (5%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+ A+ Sbjct: 58 APSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAA 117 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K LG+ Sbjct: 118 SMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGM 177 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------- 199 T+F+N +G+ GH TTARD+A++S + T +PQ Y I + Sbjct: 178 HNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTSEFG 237 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 NTN V + A G+KTG T + F + A+ + D LIAV++ A R + + Sbjct: 238 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 297 Query: 260 LSMGFYN---KTDRKKIN---YIIKDFYQQNLSNE 288 ++ GF +D K + ++K+ ++N+ E Sbjct: 298 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVE 332 >gi|332097261|gb|EGJ02244.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74] Length = 268 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%) Query: 6 VIIAMAMLSNIFP-FLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + A L P + +T + P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKDVII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 + D P+ + K + PN N + + L DGMKTG T +G+N+VASA Sbjct: 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250 Query: 233 IQGDQSLIAVILGALDR 249 QGD LI+V+LGA Sbjct: 251 TQGDMRLISVVLGAKTD 267 >gi|262368687|ref|ZP_06062016.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046] gi|262316365|gb|EEY97403.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046] Length = 382 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 14/347 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 + + +S LS Y L+D TG ++A + PAS+TK+MT++ Sbjct: 7 LAAALLVPSISFAATVLSSPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSF 66 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIA 120 ++ L + + ++++A S+ T T L+ +I++S ND + Sbjct: 67 IIEQKLLAGELTEDEKVRMNESAWCRGSSSESCMYVPLNGTATALEMLRGIIIQSGNDAS 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE + E FV MN +K +G++ T FMN+ G+ GHY+TA+DMA L+ I D Sbjct: 127 KAMAEHIAGNEGTFVHMMNTEAKRIGMTNTSFMNSTGMPAEGHYSTAKDMATLAQHIIHD 186 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +Y + K G K N N + T DG+KTG T +G+ + SA +G LI Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSAKRGPMRLI 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYIIKD----FYQQNLSNEVPNISE 294 +VI GA R + +L+ G+ N + + N ++ F +++ + Sbjct: 247 SVIFGAPSMQERATQTREILAWGYANFETKNVQAANQVLAKSKVWFGKESDVQIGLAETF 306 Query: 295 EVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNKITKK 336 V + + TQ+ A K+ + +L I +K Sbjct: 307 NVTMPKGQANAIKTQLVVQPKLTAPLKKGQVVGKYVASLDGKVIAEK 353 >gi|300021591|ref|YP_003754202.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] gi|299523412|gb|ADJ21881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium denitrificans ATCC 51888] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 102/250 (40%), Positives = 149/250 (59%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T L + +TG V+ D W PASLTKL TAY+ F +K+ K LT I S Sbjct: 21 TASAGPALLFELSTGKVLYSEDIDDVWYPASLTKLTTAYLAFQAIKDGKLRLTDKIPCSL 80 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ PPS + G T+T++ AL+ +IVKSAND+ V +AE++ +E F++ MN T++ Sbjct: 81 VATLQPPSKAGLNVGDTLTVEQALQAVIVKSANDVTVMLAEAISGSETNFIEQMNATAQR 140 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG++ THF N +G+ G T+ARD+A ++ I TDFP+Y Y+ + + I ++ + N Sbjct: 141 LGMTRTHFDNTNGLPSPGQLTSARDLARIARAIVTDFPEYASYWSMPAMRIGKRRLGSHN 200 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + TF GADGMKTGFTC SG+N+ ASA + + L+A++LG N R SA+LL GF Sbjct: 201 ALLKTFPGADGMKTGFTCDSGYNVAASATRDGRRLVAIVLGESSGNERAVRSAALLEYGF 260 Query: 265 YNKTDRKKIN 274 + N Sbjct: 261 QYYDWKAMFN 270 >gi|189024322|ref|YP_001935090.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|261325261|ref|ZP_05964458.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261752478|ref|ZP_05996187.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261758361|ref|ZP_06002070.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265998302|ref|ZP_06110859.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|189019894|gb|ACD72616.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|261301241|gb|EEY04738.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261738345|gb|EEY26341.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742231|gb|EEY30157.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|262552770|gb|EEZ08760.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] Length = 461 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 5/265 (1%) Query: 1 MRQF----LVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L++ A+ S + ++A+ + ++D NTG + D PAS Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 ++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLL 260 + L+AV++G +R+ A L+ Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|170740496|ref|YP_001769151.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168194770|gb|ACA16717.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 503 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 160/319 (50%), Gaps = 12/319 (3%) Query: 5 LVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 L+ A + + P + N ++D +G V+ D +PAS Sbjct: 15 LIAAAAVLTAMTHPADARRRGHHHGGGGGYNPPFAAMVVDVKSGRVLHAVNEDALRHPAS 74 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT Y++F L+ K L TP+ IS NA+ PS + GST+T++ A+K L+ KS Sbjct: 75 ITKVMTLYLLFEQLERGKMSLDTPLEISANAARQAPSKLGLRPGSTITVEEAIKALVTKS 134 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+A AI E++ +E F + M + LG+S TH+ NA G+ TTARD+ +L+ Sbjct: 135 ANDVACAIGENIAGSEGAFAEMMTRKAHALGMSRTHYANASGLPDSDQITTARDLTVLAR 194 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ SA Sbjct: 195 AIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGRVEGVDGIKTGYTRDSGFNLMTSARLA 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 D+ ++AV+LG +R+ + L+ + + + +++ V +E Sbjct: 255 DRHIVAVVLGGKSVASRDAIMTRLVQGNLPKAYAGARTTPPVTELAERSRPAVV---AER 311 Query: 296 VCTTQKEIINYNTQMKEAK 314 TT+ + + + + Sbjct: 312 SATTRTLVAAADDDDEGVE 330 >gi|260565574|ref|ZP_05836058.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260151642|gb|EEW86736.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|326538900|gb|ADZ87115.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 461 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 5/265 (1%) Query: 1 MRQF----LVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L++ A+ S + ++A+ + ++D NTG + D PAS Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 ++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLL 260 + L+AV++G +R+ A L+ Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|229003020|ref|ZP_04160878.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] gi|228758220|gb|EEM07407.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides Rock1-4] Length = 444 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 39/370 (10%) Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L A + L++ ++G ++ + D Sbjct: 12 KRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+ H Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ + DFP+ + +I +G KYP N NW + Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ R + L GF N Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 +K Y + + + V N ++ T Q + +K +KD ++ +F+ + Sbjct: 312 FEVKKV--YPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKD--AYKTEFKDV 367 Query: 327 TLLKNKITKK 336 + K KK Sbjct: 368 SKDKEAPIKK 377 >gi|319405849|emb|CBI79481.1| Penicillin-binding protein [Bartonella sp. AR 15-3] Length = 449 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 6/325 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ + + + ++S+ + + E + Y ++D NTG + + PASLTK+M Sbjct: 13 KKVGISLTLLVISHSWAVATPKEAHPDKYAAIVIDANTGKTLFQANAALKRYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI E L +E+KF Q M ++ LG+ T F NA G+ +Y+TA+D+A L+ ++ Sbjct: 133 AAIGEYLGGSEQKFAQMMTIKARKLGMKNTRFANASGLPDTRNYSTAQDIATLALALRKH 192 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F+ +G+ N N + T G DG+KTG+T SG N+ S +S++ Sbjct: 193 FPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRIDGRSIV 252 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS----NEVPNISEEV 296 AV++G TRN A+LL + KT R + N + L +P I + + Sbjct: 253 AVVMGGKSSTTRNIHMANLLKQ-YLPKTSRIETNKNLVATVHYKLPTVSATPIPIIKDNL 311 Query: 297 CTTQKEIINYNTQMKEAKDKESHFI 321 + EI + T + E + + + Sbjct: 312 INSDDEISSLLTALAEQSNDPNTAV 336 >gi|167745582|ref|ZP_02417709.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662] gi|317472823|ref|ZP_07932134.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] gi|167654894|gb|EDR99023.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662] gi|316899742|gb|EFV21745.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA] Length = 394 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 168/365 (46%), Gaps = 33/365 (9%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAEN 45 M++ F++ + + + S + ET +++ +G ++ + Sbjct: 1 MKKAAIFILSLLLCISSGTMVCATEPETLLTVAQDGEGLDLTAKSAVVMEAGSGTILYQK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 D PAS+TK+M+ ++F L + + +T+S++A+ S + G + T+D Sbjct: 61 DKDMKLPPASVTKVMSLLLIFEELDKGNLKYSDKVTVSEHAASMGGSQVFLEPGESQTVD 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 LK +++ SAND V++AE + +E FV+ MN +K LG+ T F N+ G+ GH T Sbjct: 121 TMLKCIVISSANDAVVSMAEHIAGSEGAFVKRMNEKAKQLGMKNTTFKNSCGLDIKGHET 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMK 217 +A D+A++S + T P Y +I + + NTN + + G G+K Sbjct: 181 SAYDIALMSRELTTKHPDIFKYTKIWMDKFTHETKKGTKEFGLSNTNKLLKQYNGCTGLK 240 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY------NKTDRK 271 TG T + F + A+A + SLIAV++ + D TR K +++LL GF + T K Sbjct: 241 TGSTSTAKFCLSATATRNGVSLIAVVMASDDSKTRVKDASALLDYGFSHCQVMEDHTKAK 300 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 I I ++ + +I ++ + + Q++ + K +K +L Sbjct: 301 DIGKIAVTKGKKETVSYQEDIPAKIVLVKGSKNDVKKQIRIGQVK----APVKKGQVLGY 356 Query: 332 KITKK 336 I K+ Sbjct: 357 IIYKR 361 >gi|299530593|ref|ZP_07044011.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni S44] gi|298721416|gb|EFI62355.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni S44] Length = 390 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 8/264 (3%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L Sbjct: 27 AAPVPPEIAARNYLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQ 86 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + +S+ A + P S + +++ L +I++S ND +A+AE++ T + FV+ M Sbjct: 87 RMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMM 146 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 N+ +K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G Sbjct: 147 NDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYATKQYSYPGT 206 Query: 199 KY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250 N N + DG+KTG T A+G+ +VA+A + + L++++LG Sbjct: 207 PASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEK 266 Query: 251 TRNKVSASLLSMGFYNKTDRKKIN 274 R S LL+ G+ K + Sbjct: 267 ARANESQKLLNWGYTAFDAVKLFD 290 >gi|118443387|ref|YP_878099.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118133843|gb|ABK60887.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 392 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 167/343 (48%), Gaps = 32/343 (9%) Query: 4 FLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FLV+ M+ + N+ + A + L++ TG +I E + PAS+TK+MT Sbjct: 12 FLVVTLMSQICVVNVMAAENTALDVEAKAGLLMEPTTGKIIFEKNVHEKFAPASVTKIMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPP---SNSTFKKGSTMTLDNALKLLIVKSAND 118 + + K LT + +S+NA + S+ G T+++ LK + + S ND Sbjct: 72 MLLTMEAVDSGKIKLTDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGND 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + +E FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S + Sbjct: 132 AATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELL 191 Query: 179 TDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + Y I +G+K P N N V + G DG+KTGFT + + I A+A+ Sbjct: 192 K-HKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAV 250 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + + ++A+I+GA RN+ ++ L++ GF +K + + ++ Sbjct: 251 RDNIRMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVV-------------AKDSDVE 297 Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + E + AK K+ + E+ T KNKITKK Sbjct: 298 KITLDKKGEKFFF------AKAKDDLNLVLERGT--KNKITKK 332 >gi|299068147|emb|CBJ39364.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a [Ralstonia solanacearum CMR15] Length = 397 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 17/297 (5%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-- 84 + L D +G V+ D PASLTKLMTAY+ + +++ K +T ++ Sbjct: 40 AARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAVAAVRDGKLKYDQMLTPTETV 99 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + + S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN ++ Sbjct: 100 RSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAER 159 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN N Sbjct: 160 LGMKGTHFMNAAGLPDPNHYTTARDLSILTSALIRDFPEDYKFYSQKEFTYNNIKQPNRN 219 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSA 257 + DG+KTG T ++G+ ++ SA + + L++V++G R + S Sbjct: 220 RLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESL 279 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 +L+ G+ + Y+ + + P++ + T K + + + K Sbjct: 280 KVLNYGYQFFDTLR--------LYEAKQALQTPDVYKGQAKTVKLGVAEDKWITVPK 328 >gi|258515293|ref|YP_003191515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257778998|gb|ACV62892.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 392 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 151/343 (44%), Gaps = 14/343 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 F++I A+ ++S + L++ NTG ++ PD AS Sbjct: 12 FVIISAICIVSKPGTIQAKPAVQNNEAGLETTAEAAILMEANTGKILWSKQPDKELPMAS 71 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MT + + K LT IT S+NA S + G ++++ L + V S Sbjct: 72 VTKIMTMLLAVEAVDAGKVKLTDKITTSENAWNMGGSQIYLEPGEELSMEEMLISIAVGS 131 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND VA+AE L +E+ FV MN +K LGL+ T+F N +G+ HYT+A DMA++ Sbjct: 132 ANDACVAVAEHLGGSEEAFVGMMNKKAKELGLAHTNFANTNGLPVENHYTSAHDMAMIIK 191 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 P ++ I +++G + NTN + + G KTG+T + + + ++ Sbjct: 192 EALR-HPLFVKVSSIYRYDLRGGDFVLWNTNKLLKWYEGTVAGKTGWTNEAKYCLASAVE 250 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + LIAV+LG + + + S L + GF N IK + + + Sbjct: 251 RKGLRLIAVVLGTAEPKSHFRESMKLYNYGFARYQAVNLENQGIK--VKTVNVGKGTDRV 308 Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFE-KITLLKNKITK 335 ++ T +K + + +K+ D +K+ K Sbjct: 309 VDIVTAEKVSLVVPKGQDKGYEKKIMAPDLINAPVQKGDKVGK 351 >gi|306841894|ref|ZP_07474574.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] gi|306288024|gb|EFM59426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] Length = 472 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 135/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STASSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|92117941|ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91800835|gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 586 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 3/296 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G ++ PD +PASLTK+MT Y++F L K L T + +S +A+ P Sbjct: 58 IIVDANSGATLSSTNPDSLRHPASLTKMMTLYLLFERLDAGKINLDTEMRVSGHAAAQDP 117 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++ T Sbjct: 118 TKLGLRSGQTIRVEDAIKGLVTKSANDAAVVIAEAVGGDEDDFARMMTRKARALGMTRTV 177 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA G+ TTARD A L ++ FP+Y YF +G+ N +G+ Sbjct: 178 YRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNHLLGSVD 237 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+ +SGFN+V + +G++ L+ V+LG +R+ LL+ R+ Sbjct: 238 GVDGIKTGYIRSSGFNLVTNLKRGNRHLVGVVLGGRSSGSRDATMRKLLTDNLDKAATRR 297 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + I + ++ + K + + ++ A E + E+ Sbjct: 298 TVAAITES---STADANAQVAEDQARSRPKGMKQVDGAVQVASAPEPVALPTERPA 350 >gi|291539061|emb|CBL12172.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 348 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 133/239 (55%), Gaps = 8/239 (3%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ TG V+ E P +PAS+TK+MT ++F L K+ L +T+S+ A+ S Sbjct: 1 MEAFTGAVVYEKNPHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASIGGSQ 60 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+ Sbjct: 61 VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNW 205 N G+ GH T+A D+A++S + T +P+ Y I I NTN Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGF 239 >gi|222475494|ref|YP_002563911.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma marginale str. Florida] gi|222419632|gb|ACM49655.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma marginale str. Florida] Length = 380 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 5/275 (1%) Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 ++KLMT Y+VF L + ++S++A + S++ K G + + + + V S Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA + Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ + V+ G R + LL F + Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETK 276 >gi|254689394|ref|ZP_05152648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|256257640|ref|ZP_05463176.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260883925|ref|ZP_05895539.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|297248482|ref|ZP_06932200.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|260873453|gb|EEX80522.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|297175651|gb|EFH34998.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] Length = 472 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|299135167|ref|ZP_07028358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] gi|298590144|gb|EFI50348.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2] Length = 597 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 140/263 (53%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + D +PASLTK+MT Y++F L K L + + +S++AS P Sbjct: 58 IVVDANSGATLQSTNADALRHPASLTKIMTLYMLFEQLDSGKLRLDSQLEVSRHASVQAP 117 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K ++ +SAND AV +AE++ +E+ F + M ++ LG+S T Sbjct: 118 TKLGLRPGQTIRVEDAIKGIVTRSANDAAVVVAEAIGGSEENFCKMMTRKARALGMSKTT 177 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++NA G+ TTARD A L I+ FP Y YF +G N N +G Sbjct: 178 YVNASGLPDDDQITTARDQATLGRAIQDRFPTYYRYFSTSVFTWRGSPIRNHNHLLGQMD 237 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ LL+ R+ Sbjct: 238 GVDGIKTGYVRASGFNLVTNIRRGNRHLVGVVLGGRSGGSRDATMRRLLAEHLDEGATRR 297 Query: 272 KINYIIKDFYQQNLSNEVPNISE 294 + I + + S+E P Sbjct: 298 TVAAITERNPSRMASDEEPAAKA 320 >gi|114704888|ref|ZP_01437796.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506] gi|114539673|gb|EAU42793.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506] Length = 482 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 134/239 (56%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A N ++D N G V+ E+ D PASLTK+MT Y+ F L +K+ LT + + Sbjct: 28 ANANAKYAGFVIDANNGKVLYEDRADEYRYPASLTKMMTLYLTFDALSKKRISLTDKMPV 87 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A+ PP+ G T+ ++ A+ L+ KSAND +V +AE L +E F + M T+ Sbjct: 88 SRYAAGRPPTKIGVPAGKTLQVEEAIYSLVTKSANDASVTLAEYLAGSESSFAEMMTRTA 147 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG++ T + NA+G+ G TTARD A L ++ FPQY YF + +G++ N Sbjct: 148 HKLGMTKTTYKNANGLPDSGQRTTARDQAKLGIALREHFPQYYKYFSTRSYSFRGRRLGN 207 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N +G G DG+KTG+ ASGFN+V+S + +SL+AV++G +R+ LL Sbjct: 208 HNRVLGRMTGVDGIKTGYINASGFNLVSSIKRDGKSLVAVVMGGRSGRSRDNHMVDLLQ 266 >gi|256369597|ref|YP_003107107.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|255999759|gb|ACU48158.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] Length = 472 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|154248459|ref|YP_001419417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154162544|gb|ABS69760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 663 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 144/266 (54%), Gaps = 4/266 (1%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 ++D NTG V+ E+ PD +PAS+TK+MT Y++F L+ L + + +S A+ Sbjct: 74 SSAIIVDANTGKVLYEDNPDALRHPASVTKIMTLYLLFEQLEAGNLKLDSDLQVSAKAAS 133 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 PS K GS + +++A+K L+ +SAND+AV IAE+L +E +F + M ++ LG+S Sbjct: 134 QQPSKLGVKPGSAIEVEDAIKALVTRSANDVAVVIAENLGGSESEFAEMMTRKARALGMS 193 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 T F NA G+ TTARD++IL I+ FP+ YF + +G+ N N +G Sbjct: 194 RTVFRNASGLPNPNQVTTARDLSILGRAIQDRFPKQYKYFATRTFYYRGQAIGNHNRLLG 253 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL----LSMGF 264 G DG+KTG+T ASGFN+V S + + L+ V+LG R+ +L L++ + Sbjct: 254 RVEGVDGIKTGYTQASGFNLVTSVKRDGRFLVGVVLGGSSAGARDARMTNLISQNLNVAY 313 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVP 290 K+ + + N S P Sbjct: 314 AGGRTAPKVTEVAEAAIPVNRSFAAP 339 >gi|260459198|ref|ZP_05807453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259034752|gb|EEW36008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 155/348 (44%), Gaps = 16/348 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 I+ A+ + ++D TG V+ + PASLTK+MT Y Sbjct: 16 LKAIMVFALALTFVCADVASSLAARQAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F L + K TP+ S AS P+ K G ++T+D A+ ++ KSAND A A+ Sbjct: 76 LTFEALAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVDTAILSIVTKSANDSATAL 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E + E F + M ++ LG++ T F NA+G+ G +TTARDMA L ++ FPQ Sbjct: 136 GEMIGGNETNFARMMTAKARQLGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y YF + ++ N +G G DG+KTG+T ASGFN+V+S G++ L+AV+ Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVV 255 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDR--------------KKINYIIKDFYQQNLSNEV 289 +G +R+ A+L++ + R + + ++ + +E Sbjct: 256 MGGTSGGSRDNQMAALINTYLPRASTRGGGDLVAKADSNPIRALAKVLLPKHDAPTPDEK 315 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDK--ESHFIDFEKITLLKNKITK 335 P T E A+D E E ++ K K Sbjct: 316 PVAVASDDTAVSEDATVAQGDSNAEDSSAEDDATVEEPKLVVPAKKVK 363 >gi|17987097|ref|NP_539731.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase fraction C) [Brucella melitensis bv. 1 str. 16M] gi|225852669|ref|YP_002732902.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|256044826|ref|ZP_05447730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256113731|ref|ZP_05454535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256263838|ref|ZP_05466370.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|265991251|ref|ZP_06103808.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265995087|ref|ZP_06107644.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|17982757|gb|AAL51995.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase fraction c) [Brucella melitensis bv. 1 str. 16M] gi|225641034|gb|ACO00948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|262766200|gb|EEZ11989.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263002035|gb|EEZ14610.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263093969|gb|EEZ17903.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|326409190|gb|ADZ66255.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] Length = 472 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|62290085|ref|YP_221878.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82700009|ref|YP_414583.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|148560388|ref|YP_001259090.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|163843436|ref|YP_001627840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225627640|ref|ZP_03785677.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237815590|ref|ZP_04594587.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254697529|ref|ZP_05159357.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254701913|ref|ZP_05163741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254706648|ref|ZP_05168476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710245|ref|ZP_05172056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|254714241|ref|ZP_05176052.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|254717677|ref|ZP_05179488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|256031739|ref|ZP_05445353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256061252|ref|ZP_05451403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|256159905|ref|ZP_05457627.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|256255139|ref|ZP_05460675.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260168872|ref|ZP_05755683.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. F5/99] gi|260546634|ref|ZP_05822373.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260761956|ref|ZP_05874299.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|261219519|ref|ZP_05933800.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261222337|ref|ZP_05936618.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|261314108|ref|ZP_05953305.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317805|ref|ZP_05957002.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261322014|ref|ZP_05961211.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|265988836|ref|ZP_06101393.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|294852510|ref|ZP_06793183.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|62196217|gb|AAX74517.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616110|emb|CAJ11149.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|148371645|gb|ABQ61624.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|163674159|gb|ABY38270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225617645|gb|EEH14690.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237788888|gb|EEP63099.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|260095684|gb|EEW79561.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260672388|gb|EEX59209.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260920921|gb|EEX87574.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260924608|gb|EEX91176.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294704|gb|EEX98200.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261297028|gb|EEY00525.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303134|gb|EEY06631.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|264661033|gb|EEZ31294.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|294821099|gb|EFG38098.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] Length = 472 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|89099052|ref|ZP_01171931.1| DacF [Bacillus sp. NRRL B-14911] gi|89086182|gb|EAR65304.1| DacF [Bacillus sp. NRRL B-14911] Length = 371 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/329 (24%), Positives = 142/329 (43%), Gaps = 10/329 (3%) Query: 16 IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + ++AE + + L++ +TG V+ E + PAS+TK+MT ++ + Sbjct: 1 MMAPAALAEESGVKLVDNVKSAILIERDTGAVLYEQNSNEQLPPASMTKIMTMLLIMEAI 60 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + K + I S+ A+ S + G MT + LK + + S ND +VA+AE L Sbjct: 61 DKGKLSMDEKIRASEYAASMGGSQIFLEPGEEMTTEQMLKGIAIGSGNDASVAMAERLAG 120 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHY 187 +E++FV+ MN +K+LGL T F NA G+ HY+TA DMA+++ + ++ Sbjct: 121 SEEEFVKLMNKKAKDLGLKDTIFKNATGLPVTEHYSTAHDMALMAKELLKYEGITKFTGT 180 Query: 188 FQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 ++ ++ K NTN V + G DG+KTGFT + + + A+A + +IAV+ G Sbjct: 181 YEAYLREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTNEAKYCLTATAEKNGMRVIAVVFG 240 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 A RN +L F + E+ + + Sbjct: 241 APTSKERNAQVTKMLDYAFSQYETHPMYKRNEALGSAKVSKGEIKQVEALTSEPISLLTK 300 Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKIT 334 K K D + ++I Sbjct: 301 KGEDTKAVKKTVVLKKDLKAPIAKGDQIG 329 >gi|58584548|ref|YP_198121.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418864|gb|AAW70879.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 161/338 (47%), Gaps = 11/338 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L + + +L + PF S + K +LD + I E+ D +P+S++KLM Sbjct: 2 SILDKLVILLLVSTLPFSSYSYQFRTKAKQAVVLDLASDLFIFEHNSDEKMSPSSMSKLM 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T YV F +LK + +S+ A E S+ K+G ++++ L+ + S ND Sbjct: 62 TLYVAFDYLKAGIIDMKDKFRVSRKAWERKGSSMFLKEGQSVSVKELLEGVTTVSGNDAC 121 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 + +AE + +E+ FV MN ++NL LS ++F+N+ G H+ +A+D+ +L+ RI TD Sbjct: 122 ITLAEGIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSAKDLVVLAKRIFTD 181 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y F + L N N + +G DG+KTG+T A G+ IV SA + D+ + Sbjct: 182 FPEYYDLFSKQYLTYNDIIQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVISAKRNDRRIF 241 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI--SEEVCT 298 AV+ G R + + L+ F + +K F + ++ E+ + E + Sbjct: 242 AVVNGLNTEKERIEEAKRLIQYSFNHFNTKKI-------FAKDSVVEEINVLYGKERKVS 294 Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 T + +DK ++++ + K ++ Sbjct: 295 ATVANDVTITYNRNLRDKIKVRVEYKDMIPAPIKKGQE 332 >gi|254693878|ref|ZP_05155706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261214165|ref|ZP_05928446.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|260915772|gb|EEX82633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] Length = 472 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|169333947|ref|ZP_02861140.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM 17244] gi|169259512|gb|EDS73478.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM 17244] Length = 392 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 20/351 (5%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNK--------LPYYTLLDTNTGHVIAENYPDHPW 51 +++ + +I++ +++ F+ E +K L+D TG V+ E D Sbjct: 2 LKKIVSLILSFSLIFTSSSFVFAKEESKNEVDMDIQSKSVVLMDVGTGKVLYEKNKDEKL 61 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS+TK+MT ++ + K ++ +TIS AS+ S ++G ++D L + Sbjct: 62 PLASVTKVMTILLILEAVNNKTINMSDMVTISDYASKMGGSQLFMEEGEMRSVDELLNAI 121 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 I++SAND A+ E + + +KFV MN+ +K LG+ +HF+N++G+ HY++A D+A Sbjct: 122 IIESANDACAAMGEFVGGSIEKFVLMMNDRAKELGMKNSHFVNSNGLPADDHYSSAYDIA 181 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCAS 224 +++ + +P I K + NTN + DG+KTG+T + Sbjct: 182 LMTKEVCK-YPDIFKISSTWQKTIKIGKKNDKERTLSNTNKLLRMNDKVDGLKTGYTADA 240 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G I A+ +GD LIAVIL A D TR + LL+ GF K N + KD + Sbjct: 241 GHCISATGKEGDLRLIAVILHAPDSKTRFAEANKLLNYGFSTY---KAENVVEKDKAVAD 297 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 + N + + I + + + K +D +KI K K Sbjct: 298 VEVNKGNKDKVSAVAKDNISTLMNKNENKEYKSDVKLDNKKINAPVKKGDK 348 >gi|90424819|ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] gi|90106833|gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB18] Length = 588 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 146/259 (56%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 ++ N ++D N+G ++ N PD +PASLTK+MT Y++F L+ K L + Sbjct: 47 VATESYNPAFASIIVDGNSGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSE 106 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +S++AS P+ + G T+ +++A+K L+ +SAND AV I+E++ E F + M Sbjct: 107 MDVSEHASIQAPTKLGLRPGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMT 166 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +++LG++ T + NA G+ TTARD A L ++ FP+Y +F +G Sbjct: 167 KKARSLGMTRTVYRNASGLPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNA 226 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G+ G DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +L Sbjct: 227 IRNHNRLLGSVEGVDGIKTGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNL 286 Query: 260 LSMGFYNKTDRKKINYIIK 278 L+ + R+ + + + Sbjct: 287 LAANLDKASTRRTVTAVAE 305 >gi|241204910|ref|YP_002976006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858800|gb|ACS56467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 292 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 136/261 (52%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + LS++F + ++D +G V+ + D PASLTK+M Sbjct: 2 MTKTTSRLLATALSSVFLMGAFTLAQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMM 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 62 TLYLAFEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAA 121 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D Sbjct: 122 VAIAEQLGGSEQVFAKAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 181 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++ Sbjct: 182 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVV 241 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G + R+ ASLL Sbjct: 242 GVVMGEKTASIRDDKMASLLD 262 >gi|254730424|ref|ZP_05189002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260758130|ref|ZP_05870478.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260668448|gb|EEX55388.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] Length = 472 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|269958469|ref|YP_003328256.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str. Israel] gi|269848298|gb|ACZ48942.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str. Israel] Length = 380 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 132/275 (48%), Gaps = 5/275 (1%) Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 ++KLMT Y+VF L + ++S++A + S++ K G + + + + V S Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +A+AE + ++++FV+ +N +K + L+ + F N G GH + RD+ LS Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINGLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA + Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ + V+ G R + LL F + Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETK 276 >gi|307943474|ref|ZP_07658818.1| penicillin-binding protein [Roseibium sp. TrichSKD4] gi|307773104|gb|EFO32321.1| penicillin-binding protein [Roseibium sp. TrichSKD4] Length = 446 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 97/264 (36%), Positives = 155/264 (58%), Gaps = 2/264 (0%) Query: 9 AMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 A L +F F LS ++ + L+D +G V+ E W PASLTK+MTAYV Sbjct: 1 MFASLFGLFCFFLSSPTKAEIGAHILIDAKSGDVLYERQSTRKWYPASLTKIMTAYVTLK 60 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +++++ +T+P+ SKN+ PPS FK G+ +T+D ALK++++KSAND+AVA+ E++ Sbjct: 61 AVRDERITMTSPVVQSKNSISEPPSKMGFKVGTQLTVDAALKIIMIKSANDVAVALGEAV 120 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E F+ MN +K LG+ T F+N HG+ + +TARDMA+L+ DFP+ Sbjct: 121 SGSEAAFIAEMNREAKRLGMRNTRFVNPHGLPDNAQVSTARDMALLARAFWYDFPEARQI 180 Query: 188 FQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 ++ G++ K + N + GA+GMKTG+ C SG+N+ A+ + ++LIAV+LGA Sbjct: 181 YKYPGIKFGRKPLRSANRFFLQRVPGANGMKTGYICNSGYNVAATVTRRGRTLIAVVLGA 240 Query: 247 LDRNTRNKVSASLLSMGFYNKTDR 270 R ++ L+ GF + R Sbjct: 241 RSGLERTALTRELMDKGFKKRGSR 264 >gi|303247169|ref|ZP_07333443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] gi|302491328|gb|EFL51216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] Length = 366 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 9/275 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54 MR+ + ++ +L I P + + + + D TG + PD PA Sbjct: 1 MRRIMFLL--IVLCLIGPKTAFPAKHHSSGKLAVKAALVADYGTGKIFYSQDPDRRIAPA 58 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MT Y+VF + +A + + +S+ A S + G T+TLD ++ + V Sbjct: 59 SVTKVMTMYLVFDMVASGQASFSDKVKVSRRADATGGSTMNLRAGETVTLDELMRGMAVA 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND AVA+AE +V+ MN ++ LG++ T F +G+ G TTARD+ L+ Sbjct: 119 SGNDAAVAVAEHF-GGVPAWVKRMNAKARQLGMTRTTFKTPNGLPAPGQLTTARDLMKLA 177 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 +PQ + Y + G + NTN +G G DG+KTGF ASGFNI+A+A + Sbjct: 178 VSYLRHYPQALRYHSTTTINHCGAVHANTNRLLGVCEGMDGIKTGFVNASGFNIIATAKR 237 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G +IAV+LG RN+ + +L F D Sbjct: 238 GKTRIIAVVLGGRSSQVRNRETERILDASFEGSVD 272 >gi|116252402|ref|YP_768240.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115257050|emb|CAK08144.1| putative D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 291 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 136/261 (52%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + LS+ F + + ++D +G V+ + D PASLTK+M Sbjct: 1 MTKTTSRLLATALSSFFLMGAFTQVQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 61 TLYLAFEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L TE+ F + M + + LG+ T F N G+ TTARDMA L + D Sbjct: 121 VAIAEQLGGTEQVFAKAMTDKAHQLGMKDTVFRNPSGLPDPEQVTTARDMATLGVSLMRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++ Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVV 240 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G + R+ ASLL Sbjct: 241 GVVMGEKTASIRDDKMASLLD 261 >gi|316933618|ref|YP_004108600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] gi|315601332|gb|ADU43867.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris DX-1] Length = 576 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 145/253 (57%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D N+G V++ PD +PASLTK+MT Y++F L++ K L + + +S+ Sbjct: 53 NPAFASIIVDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEF 112 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 AS P+ + G + +++A+K L+ +SAND AV IAE++ +E +F + M ++ L Sbjct: 113 ASGQAPTKLGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARAL 172 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S T + NA G+ TTARD +IL ++ FP+Y YF +G+ N N Sbjct: 173 GMSRTVYRNASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNR 232 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G+ G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ Sbjct: 233 LLGSVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 292 Query: 266 NKTDRKKINYIIK 278 R+ + I + Sbjct: 293 KGATRRTVAAITE 305 >gi|114770997|ref|ZP_01448437.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HTCC2255] gi|114548279|gb|EAU51165.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HTCC2255] Length = 382 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 8/262 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A ++D TG ++ D PAS++KLMT +++F L++++ + T + Sbjct: 22 AFDTIARSAMVIDQTTGTILMAKDADRRVPPASMSKLMTLFMLFEALRDERIAMDTEFLV 81 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A++ S ++G +++ + ++ +IV+S ND + +AE++ TE F M + Sbjct: 82 SERATKIGGSTMFLREGERVSVRDLIQGIIVQSGNDACITVAENIAGTETAFADQMTKRA 141 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 LG++ + F N+ G +ARD+ ++ I T+FP Y +F G K N Sbjct: 142 IELGMNNSSFGNSTGWPDPLQRMSARDLVTIANIIITEFPNYYPFFAQTSFTWDGVKQNN 201 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + +GADG+KTG T +G+ +V SA QG + +I +I G + R + L + Sbjct: 202 RNPLLPLGIGADGLKTGHTNEAGYGLVGSARQGQRRIIFMITGLESKAARANEAEKLTNW 261 Query: 263 GFYNKTDRKKINYIIKDFYQQN 284 F +IKD ++++ Sbjct: 262 AFRQF--------VIKDLFKKD 275 >gi|266624787|ref|ZP_06117722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288863335|gb|EFC95633.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 410 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 11/254 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + + P L++ +TG VI E D +PAS+TK+MT ++F L K +T + S Sbjct: 50 PSIQAPSALLMEASTGQVIYEKDADTKRSPASITKIMTLILIFDALDSGKIKMTDEVVTS 109 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +A S ++G T T++ +K ++V S ND +VA+AE + TE++FV+ MN + Sbjct: 110 AHAKSMGGSQVFLEEGETQTVETMIKCIVVASGNDASVAMAEYIAGTEEEFVKMMNERAA 169 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 LG++ THF + G+ + H TTARD+A++S + +PQ +Y I I Sbjct: 170 GLGMTNTHFEDCCGLTESPDHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQG 229 Query: 200 -----YPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTN + T G+KTG T + + + A+A + LIA I+ A D R Sbjct: 230 TKEFGLSNTNKLLKMATNFQVTGLKTGSTSLAKYCLSATAEKDGVRLIASIMAAPDYKAR 289 Query: 253 NKVSASLLSMGFYN 266 + +LL+ G+ N Sbjct: 290 FADAQTLLNYGYAN 303 >gi|126642471|ref|YP_001085455.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [Acinetobacter baumannii ATCC 17978] Length = 346 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 148/317 (46%), Gaps = 14/317 (4%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D TG ++A + PAS+TK+MT+Y++ L + + + ++++A S+ Sbjct: 1 MDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSS 60 Query: 94 ---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 T T+ L+ +I++S ND + A+AE + E F MN +K +G++ T Sbjct: 61 ESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNT 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N + T Sbjct: 121 QFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTD 180 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--T 268 DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF N Sbjct: 181 PSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETA 240 Query: 269 DRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD-----KESH 319 + + N ++ F ++N + V + + TQ+ + ++ Sbjct: 241 NVQPANQVLAKAKVWFGKENEVQVGLAENFNVTMPKGKADGIKTQLVVQPNLNAPLQKGQ 300 Query: 320 FIDFEKITLLKNKITKK 336 + +L I +K Sbjct: 301 VVGKLVASLDGKVIAEK 317 >gi|222086064|ref|YP_002544596.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221723512|gb|ACM26668.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 504 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 129/259 (49%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + + S A ++D NTG+V+ D PASLTK+MT Sbjct: 26 KMLFGLAVSTATITMTVDASYAAGGSKYAGIVIDANTGNVLYSENADTLHYPASLTKMMT 85 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F L+ + L TP+ SKNA+ P+ G ++T+ A+ ++ KSAND A+ Sbjct: 86 VYLTFEALESGRITLDTPVVFSKNAAMQAPTKLGIGTGRSVTVREAILGIVTKSANDAAM 145 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E L +E F + MN+ ++ LG++ T + N +G+ TTARD A L ++ F Sbjct: 146 ALGEMLGGSEDNFARMMNDKARMLGMTRTTYRNPNGLPNTAQMTTARDQARLGIALREHF 205 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY F + + P N +G+ G DG+KTG+T A+G+N+ S +S++ Sbjct: 206 PQYYGLFSTTSFRLGNRVIPGHNHLLGSVRGVDGIKTGYTRAAGYNLATSVKVDGRSIVG 265 Query: 242 VILGALDRNTRNKVSASLL 260 V+LG R+ L+ Sbjct: 266 VVLGGASTPARDNQMRKLI 284 >gi|260566296|ref|ZP_05836766.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260155814|gb|EEW90894.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] Length = 461 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 5/265 (1%) Query: 1 MRQF----LVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L++ A+ S + ++A+ + ++D NTG + D PAS Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 ++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLL 260 + L+AV++G +R+ A L+ Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLI 265 >gi|227821811|ref|YP_002825781.1| penicillin-binding protein [Sinorhizobium fredii NGR234] gi|227340810|gb|ACP25028.1| penicillin-binding protein [Sinorhizobium fredii NGR234] Length = 498 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 2/287 (0%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V++A + ++ ++A N ++D TG V+ D PASLTK+MT Y+ Sbjct: 24 VVLAGVVAGLVYSAPALA--NSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLT 81 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L+ + +TP+ SK A+ PPS + G +T++ A+ L+ +SAND A A+ E Sbjct: 82 FEALEAGRISKSTPVPFSKKAAAEPPSKLGVRAGKAITVEQAVLSLVTRSANDAATALGE 141 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E++F + M N ++ LG++ T + NA+G+ TTARD A L ++ FPQY Sbjct: 142 LLGGSEQRFARMMTNKARALGMTRTTYRNANGLPNTEQKTTARDQARLGLALRQHFPQYY 201 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 YF + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G Sbjct: 202 DYFSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMG 261 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 R+ L++ + R N I + + P I Sbjct: 262 GTSGGARDAQMRKLVAKYMPAASRRGNGNLIAEAPATPVETVTEPAI 308 >gi|229170684|ref|ZP_04298327.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228612787|gb|EEK69969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] Length = 442 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVI---IAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I + + + + AET + L++ N+G ++ + D Sbjct: 12 KRFIAIGTVLTLFCSMVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADELLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N NW + Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKASSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 +K Y + + + V N ++ Q + K KD KE + Sbjct: 312 FEVKKV--YEKDSVVKGHETVRVANAKDKDVVVQAKQAVSLPMPKGNKDVYKKEFKVSNK 369 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 370 EQEAPIKKDVT 380 >gi|260587845|ref|ZP_05853758.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|331083847|ref|ZP_08332956.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542110|gb|EEX22679.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|330403272|gb|EGG82832.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium 6_1_63FAA] Length = 393 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 161/327 (49%), Gaps = 16/327 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + +V I + + P AE + P+ L++ +TG +I E D PAS+TK+ Sbjct: 8 KIVVGILLFCSLFLTPLTVKAENEELITAPHGVLMEASTGKIIYEKDMDTRVKPASITKI 67 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT ++F L++ + + S A S ++G T++ +K +++ S ND Sbjct: 68 MTLILIFDELEKGNLHMEDEVVTSAYAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDA 127 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIK 178 + A+AE + +E +FV+ MN +K LG+ T+F + G+ + HYT+A D+AI+S + Sbjct: 128 SAAMAEHIAGSETEFVKRMNERAKGLGMENTNFEDCCGLTESDNHYTSAHDVAIMSRELI 187 Query: 179 TDFPQYMHYFQIKGLEIKGKKY--------PNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 T +P+ + Y + I NTN + ++ G G+KTG T + + + A Sbjct: 188 TRYPKILEYSSVWMENITHVTQKGNSEFGLTNTNKLIRSYDGCVGLKTGSTSVAKYCVSA 247 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 A + +LI+V++ A D R K +A++L++GF + + ++ + Q + V Sbjct: 248 VAQREGITLISVVMTAPDYKVRFKDAAAMLNLGF--GSCKLYVDEQKEKLPQIPVEGGV- 304 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKE 317 + + C +KE +T+ ++ E Sbjct: 305 -LEKVPCAYEKEFRYLDTEGASFENIE 330 >gi|261409755|ref|YP_003245996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261286218|gb|ACX68189.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 336 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 23/283 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F VI+ ++ +F I K L+ +TG V+ + D P PAS++K+MT Sbjct: 46 FGVILIAVFIARVF----IPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + + +S+ A+E P S +G TL + LI+ SAND AVAI Sbjct: 102 LVLDAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVV------------QHGHYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ + TARD Sbjct: 162 AEHLGGSEARFVETMNARAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAV----GTFLGADGMKTGFTCAS 224 A+L+ + P + + L + K+ TN + + G DG KTG+T ++ Sbjct: 222 AMLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTASA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G+ +A +G LI+V++G D + R + L+ GF + Sbjct: 282 GYCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDRQ 324 >gi|295103490|emb|CBL01034.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii SL3/3] Length = 410 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 2/240 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D +G V+ E D AS+TK+MT + F + + + T + +S++A Sbjct: 61 AAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHAYHM 120 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G TLD LK + V SAND AVA+AE + +E FVQ MN + LG+ Sbjct: 121 GGSQIWLEPGEQFTLDEMLKAICVSSANDAAVAVAELVGGSEPAFVQQMNARAAELGMEH 180 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV 207 T F NA G+ GH +TARD+AI+S I T P+ +HY I ++G + NTN + Sbjct: 181 TTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTNKLL 240 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G G+KTG T +G I ASA + +LIAV+LGA R + + +LL GF Sbjct: 241 RRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLLDYGFAAY 300 >gi|153008237|ref|YP_001369452.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151560125|gb|ABS13623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 371 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 180/304 (59%), Gaps = 7/304 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PP Sbjct: 29 IAVDVATGKVYQQQEAFQRWYPASLTKMMTAYVAFRALQSGQMTLDSPVRMTVNAAKEPP 88 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S +K GS MTLD ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +H Sbjct: 89 SKMGYKPGSVMTLDTALKIMLVKSANDVAVAVAEAVGGTESGFVQRMNAEAQRIGMVGSH 148 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGT 209 F N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ K N N +G Sbjct: 149 FANPNGLHNPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGR 208 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F Sbjct: 209 YDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRANAS 268 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----HFIDFEK 325 ++ NL+ V ++ + +C+ Q ++ + E K K + H +D + Sbjct: 269 GGATLATLRPAAGGNLNQAV-DMRKAICSQQAMADRWDGRDVEGKLKINSPYIHAMDRDP 327 Query: 326 ITLL 329 + + Sbjct: 328 VPVR 331 >gi|329923410|ref|ZP_08278892.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328941302|gb|EGG37596.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 336 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 23/283 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F VI+ ++ +F I K L+ +TG V+ + D P PAS++K+MT Sbjct: 46 FGVILIGVFIARVF----IPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + + +S+ A+E P S +G TL + LI+ SAND AVAI Sbjct: 102 LVLEAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVV------------QHGHYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ + TARD Sbjct: 162 AEHLGGSEARFVESMNIRAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAV----GTFLGADGMKTGFTCAS 224 A+L+ + P + + L + K+ TN + + G DG KTG+T ++ Sbjct: 222 AMLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTSSA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G+ +A +G LI+V++G D + R + L+ GF + Sbjct: 282 GYCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDRQ 324 >gi|147677612|ref|YP_001211827.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146273709|dbj|BAF59458.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 381 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 150/341 (43%), Gaps = 22/341 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNK-------LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 ++ +AM + + E ++ L+D TG ++ E PAS Sbjct: 11 LAAVVLLAMYFSCAQPVHSEELSETGAFFITADAAVLMDARTGQILYEKNARQKRPPAST 70 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + L +T+S NA+ ++ + G +TL+ + +++S Sbjct: 71 TKIMTALLALE-----GGDLQQIVTVSPNAASTGEASLDLRPGEKLTLEELIYGAMLESG 125 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND VAIAE + TE+ FV MN +K +G T F N++G+ GH TTARD+A+++ Sbjct: 126 NDACVAIAEHISGTEENFVLLMNQKAKMIGAEDTSFKNSNGLPAAGHCTTARDLAVITRY 185 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + +G + G+K NTN + ++ ADG+KTG T +G +VASA Sbjct: 186 ALRNDI-FRKVVSTRGRAVGGEKCRYLSNTNRLLWSYAWADGVKTGTTGEAGNCLVASAT 244 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVP 290 + + LI+V+L + D R S L+ GF N + + I + ++ EV Sbjct: 245 KDGRQLISVVLHSDD---RWLDSVKLMEFGFENFNLVQAVGRGEPIARVTVKEGTEKEVK 301 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 ++ K + K+ +K L Sbjct: 302 AVAGAGIDAVVPKNGRERPEKAVEIKKDVIAPVQKGQYLGR 342 >gi|56418545|ref|YP_145863.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261417510|ref|YP_003251192.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|319765168|ref|YP_004130669.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] gi|461913|sp|Q05523|DACA_BACST RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=CPase; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|580849|emb|CAA48577.1| D-alanine carboxypeptidase [Geobacillus stearothermophilus] gi|56378387|dbj|BAD74295.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus HTA426] gi|261373967|gb|ACX76710.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61] gi|317110034|gb|ADU92526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52] Length = 452 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 152/377 (40%), Gaps = 44/377 (11%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDH 49 MR+ ++++ + PF + P L+D TG ++ E D Sbjct: 1 MRRRKQNWLFWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDT 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLD 105 AS+TK+MT Y++ +K K+ T S + SN +K T+ Sbjct: 61 VLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVR 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162 + + + SAN VAIAE + +EK FV+ MN+ +K LGL F+NA G+ Sbjct: 121 ELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKG 180 Query: 163 -----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206 + +AR MA+L++R+ D P+ + I + K N NW Sbjct: 181 FHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWM 240 Query: 207 V----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVS 256 + + G DG+KTG+T +G +A + LI+V++ A D + R K + Sbjct: 241 LPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKET 300 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 L + GF + + ++ L E T K + +E + K Sbjct: 301 EKLFNYGFNQYSLETLYPKGYQLKGKETLPVVKGKEKEVRVATGKNLDLLVKNGEEKQYK 360 Query: 317 ESHFIDFEKITLLKNKI 333 + +D +K+T + Sbjct: 361 PVYVLDKKKMTKEGKLV 377 >gi|319404375|emb|CBI77978.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 449 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 96/324 (29%), Positives = 162/324 (50%), Gaps = 4/324 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ + + + ++ + + E Y ++D NTG + + PASLTK+M Sbjct: 13 KKVGIALTVLVIFCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI E L +E+KF Q M ++ LG+ THF NA G+ +Y+TA+DMA L+ ++ Sbjct: 133 TAIGEYLGGSEQKFAQMMTIKARTLGMKNTHFANASGLPDTRNYSTAQDMATLALALRRH 192 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F+ +G+ N N + T G DG+KTG+T SG N+ S +S++ Sbjct: 193 FPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRINGRSVV 252 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNISEEVC 297 AV++G NTRN A+LL + + +++ + + +P + Sbjct: 253 AVVMGGKSSNTRNIHMANLLKQYLPKASRVESNEHLVATARYKLPTGAATPIPLTKNNLI 312 Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321 + EI + T + E + + + Sbjct: 313 NSDDEISSLLTALAEQPNDSNTAV 336 >gi|325982052|ref|YP_004294454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212] gi|325531571|gb|ADZ26292.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212] Length = 415 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 164/310 (52%), Gaps = 16/310 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + + A+ +L I ++A N ++D +TG V+ E+ D PASLTK+MT Y+ Sbjct: 12 IYVFAIFLLLLIVSDSALA--NPRYSSIVIDADTGAVLHESNADANRYPASLTKMMTLYM 69 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +F ++++K + T + +S +A+ P +N + G ++++ +A+ LIV+SAND+A +A Sbjct: 70 LFEAMEQRKMTVDTRMPVSTHAAAMPQTNIGLRTGDSISVRDAIPALIVRSANDVAAVVA 129 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E+L K+E F + M + ++ LG+ +T F NA G+ TTARDM LS R+ DFP+Y Sbjct: 130 EALGKSEANFGRMMTDKARQLGMRSTTFRNASGLPNLEQKTTARDMVTLSTRLMKDFPKY 189 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 HYF + KG Y + N V G DG+KTGF ASGFN+ SA +G++ ++AV++ Sbjct: 190 YHYFSTQSFSYKGITYNSHNRMVRNTSGVDGLKTGFIRASGFNVATSAKRGNRRVVAVVM 249 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF--------------YQQNLSNEVP 290 G R++ A L+ F ++ K+ E P Sbjct: 250 GGNTAAARDQHMAQLIDRSFNQGNRTIQVASNSKNARAVAVTAVKMNAPTPALKPYPEQP 309 Query: 291 NISEEVCTTQ 300 SE + T Q Sbjct: 310 KASESIVTQQ 319 >gi|330448017|ref|ZP_08311665.1| penicillin-binding 6 domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492208|dbj|GAA06162.1| penicillin-binding 6 domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 459 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 7/254 (2%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 + +FP + + L+D NTG +IA N + PAS TKLM Y+V L + Sbjct: 94 AGVFP-----PKLEARAFILMDANTGQIIASNDANMRMAPASTTKLMLMYIVEQKLADGV 148 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 L + + + + A S K GS +++ ++ +IV+S ND AV +A + ++ Sbjct: 149 ISLDSKVQVPEVAWRTGGSRMFLKPGSYVSVKELIQGVIVESGNDAAVTLANYVAGSQSS 208 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 FV MN T+ LG+ THF G+ H++TA D+ +L I D+PQY H+F K Sbjct: 209 FVSMMNATAVKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYF 268 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQSLIAVILGALDRNT 251 E + PN N + T+ A GMKTG T A+G+++V+SA L+ V+LG N Sbjct: 269 EYNHIRQPNFNRLLFTYQYATGMKTGSTEAAGYSLVSSAEIPNNPMKLVGVVLGTQSLND 328 Query: 252 RNKVSASLLSMGFY 265 S +L + GF Sbjct: 329 VAAQSKALFNYGFR 342 >gi|91977526|ref|YP_570185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] gi|91683982|gb|ABE40284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisB5] Length = 578 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 91/275 (33%), Positives = 153/275 (55%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 N ++D NTG + PD +PASLTK+MT Y++F L++ K L + + +S++ Sbjct: 53 NPAFASIIVDANTGATLTATNPDALRHPASLTKIMTLYMLFERLEQGKLQLDSEMEVSEH 112 Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 AS P+ + G ++ +++A+K L+ +SAND AV IAE++ +E F + M ++ L Sbjct: 113 ASSQAPTKLGLRPGQSLRVEDAIKGLVTRSANDAAVVIAETVGGSETDFAKMMTRKARAL 172 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 G+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N Sbjct: 173 GMSRTVYRNASGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATASFNYRGNSIRNHNR 232 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+ Sbjct: 233 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 292 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 ++R+ + I++ Q ++ + + + T Q Sbjct: 293 KASNRRTVAAIVERSPSQIDTDVASDDTRQAPTVQ 327 >gi|303248189|ref|ZP_07334453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] gi|302490453|gb|EFL50362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio fructosovorans JJ] Length = 359 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 133/238 (55%), Gaps = 1/238 (0%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 + L D NTG ++ E PD PASLTK++T Y++F +++ K + +S+ A+ Sbjct: 93 VKSAMLWDMNTGGLLYEQNPDVQIPPASLTKILTLYIIFDAIRQGKLHPWDVVEVSQRAA 152 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLG 146 SN + G ++ + +K + V SAND +A+AE FV MN+T++ LG Sbjct: 153 SQGGSNMRLRAGESVKVTELIKGIAVASANDACMAMAEYLENGNPDAFVNVMNDTAQRLG 212 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 ++ + FMN +G+ G TTARDM L+ FP+ + ++ ++ N N Sbjct: 213 MTRSRFMNPNGLPADGQVTTARDMLRLASAYLEQFPKALTIHSMQFFTHNNRQRHNANAL 272 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 +G + GADG+KTGF CASG+NI+A+A +GD LI V+LG+ R + ++ LL GF Sbjct: 273 LGRYEGADGLKTGFVCASGYNIIATAKRGDTRLIGVVLGSRSAGVRLRETSKLLDKGF 330 >gi|229011746|ref|ZP_04168928.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|228749543|gb|EEL99386.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 442 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 92/371 (24%), Positives = 158/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + L + AET + L++ N+G ++ + D Sbjct: 12 KRFITIVTVLTLFCSMAVTFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N NW + Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 +K Y + + + V N ++ Q + K KD KE + Sbjct: 312 FEVKKV--YGKDSVVKGHETVRVANAKDKDIVVQTKQAVSLPMPKGNKDVYKKEFKVSNK 369 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 370 EQEAPIKKGVT 380 >gi|169351113|ref|ZP_02868051.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552] gi|169292175|gb|EDS74308.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552] Length = 380 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 139/283 (49%), Gaps = 8/283 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 T L+D ++ ++ + D PAS TK+MT ++F + KK +T SK Sbjct: 28 TPNASGAILIDADSKQILYDKNADKKLFPASTTKIMTMIIMFEAINNKKISFDDQVTTSK 87 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S ++G M+L++ K + + SAND +VA++E + + KFV+ MN +K Sbjct: 88 YAASMGGSQVYLEEGENMSLEDMFKSIAIASANDASVAVSEYIAGSTNKFVEMMNQKAKE 147 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ------IKGLEIKGK 198 L L THF N G+ + HYT D+A+++ + + I+ + Sbjct: 148 LNLKNTHFENVTGLHDNNHYTCPYDLAMMASYLIKIGGNKLLSVTSLYDSYIREDTKQSF 207 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + G DG+KTG+T +G+ +V +A + Q L+ V++ + RN+ + Sbjct: 208 WLVNTNKLLKLYDGVDGLKTGYTKEAGYCLVTTAKRDGQRLVGVVMKESEPKKRNEEMCN 267 Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 LL G N +++I Y ++++ +++ N++ V + Sbjct: 268 LLDYGLNNY--KREIIYKKDSIIEKHVVDKMDNLTINVVCKED 308 >gi|92117541|ref|YP_577270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] gi|91800435|gb|ABE62810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis X14] Length = 414 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 18/283 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNK-------------LPYYTLLDTNTGHVIAENYPDHPWN 52 ++ A +L+ F +++A N P L++ N+G V+ E D Sbjct: 19 LMAAAIVLAVGFDGIALAANNSVQGAKKEEIYETVAPTAILVEANSGSVLFEKNADELHA 78 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNA 107 P+S+ KLMT VVF +++ + LT IS+N S S +++D+ Sbjct: 79 PSSMMKLMTVEVVFDAIRKGQIKLTDEFVISENTWRKGGAPSGGSTMFAAINSRVSVDDL 138 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L I++S ND +A+AE + E F + M +++LG++ + F N++G+ G+ T Sbjct: 139 LHGAIIQSGNDSCMALAEGIAGNESAFAEKMTARARDLGMTRSTFANSNGLPDPGNKMTV 198 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 R++A+L+ I +P + F + + N N + GADG+KTG+T G+ Sbjct: 199 RELAVLARHIVLTYPDFYKLFGEREFTWNKIRQFNRNPLLTAMEGADGLKTGYTKEGGYG 258 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V SA+Q LI V+ G + R + LL GF N R Sbjct: 259 MVGSAVQNGTRLIVVVNGLASADDRAAAAKKLLEWGFRNFEVR 301 >gi|78044481|ref|YP_360920.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77996596|gb|ABB15495.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 391 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 82/344 (23%), Positives = 151/344 (43%), Gaps = 22/344 (6%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ +F + + + +++AE ++ +++ N+G + D PAS Sbjct: 1 MKPVRFFALFILILCLK---TIALAEEPQIIGRAAAVINVNSGKFVYLKNADQKMYPAST 57 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT + K L+ + I K A S G ++L++ L +++ SA Sbjct: 58 TKIMTTLIALE-----KGNLSDRVYIDKEACYVEGSAIWLNPGEQLSLEDLLYSIMLNSA 112 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+A+ + FVQ MN+ ++ LG THF+N +G+ HYTTARD+A+++ Sbjct: 113 NDSAIAVAKYIGGDVATFVQEMNDKARELGAKNTHFVNPNGLPNDDHYTTARDLALIARA 172 Query: 177 IKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 P++ K I + N N + + GA+G+KTG+T + +VAS Sbjct: 173 AMQ-NPKFREIAATKTKVINRDPKYLRFLQNHNKLLWRYEGANGIKTGYTVKARQCLVAS 231 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 A + + IAV+LG+ RN + LL F N K ++ + + + P Sbjct: 232 AARDGEEFIAVVLGSEGRNV-YDDATKLLDYAFNNFKTVKLVSKGQEFGKVEVAGGKEPV 290 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + N + + D + + ++ K Sbjct: 291 ---KLIAAEDLYDTVNRRQEPQFDYQKKIEKLQAPVKAGQRVGK 331 >gi|23502050|ref|NP_698177.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|23348005|gb|AAN30092.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] Length = 472 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|212637859|ref|YP_002314379.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212559339|gb|ACJ32394.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 447 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 37/371 (9%) Query: 2 RQFLV-IIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 + F++ I+AM P + AE + + L++ TG ++ + D AS+ Sbjct: 11 KSFIISIVAMFSFMMTLPQQTKAEEDVLNIEADAAILVEAETGKILYQKNIDAVLGIASM 70 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLI 112 TK+MT Y++ + E + T+S+ + SN +K T+ + + Sbjct: 71 TKMMTEYLLLEAIHEGRVKWDQEYTVSEYVYQISQKRDLSNVPLRKDGKYTVRELYEAMA 130 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158 + SAN VAIAE + +E FV+ MN ++ LGL F+NA G+ Sbjct: 131 IYSANGATVAIAEIVGGSETNFVKMMNEKAQELGLKDYKFVNATGLNNKDLGGLHPAGSG 190 Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG----T 209 + +AR +A L++ + +FP+ + I + K N NW + Sbjct: 191 DNEENVMSARAVATLAYHLYHEFPEILETASIPRKYFREGTDDQIKMDNWNWMLPGLVAA 250 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-----TRNKVSASLLSMGF 264 + G DG+KTG+T +G+ +A + I V++ A +R + + +L F Sbjct: 251 YEGVDGIKTGYTEFAGYCFTGTAERNGMRFITVVMNAKTNGKGTYLSRFEQTRKMLDYAF 310 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 N T +K + ++ + E T++ + + +E K K I+ E Sbjct: 311 SNYTVQKLYPKGYTTKKHKTVTVKKGKEKEVAIATKQPLSLVIKRGEEKKYKPVVVIEKE 370 Query: 325 KITLLKNKITK 335 +T K K Sbjct: 371 TLTAPVKKGQK 381 >gi|319655038|ref|ZP_08009108.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2] gi|317393262|gb|EFV74030.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2] Length = 451 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 150/373 (40%), Gaps = 45/373 (12%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 + +A+ M+ + P + A L+D TG ++ + D AS+ Sbjct: 8 KSIAGFLALVMILGLLPGIHKAHAEDILNINADAAILVDAETGKILYQKNADKVLGIASM 67 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLI 112 TK+MT Y++ ++E K +S+ + SN ++ + + + Sbjct: 68 TKMMTEYLLLEAVEEGKVKWDQEYAVSEYVWKVSQDRNLSNVPLRRDGKYNIRELYEAMA 127 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------V 159 + SAN +AIAE++ +E FV+ MN + LGL F+N+ G+ Sbjct: 128 IYSANGATIAIAETIAGSETNFVKMMNEKAAELGLKDYKFVNSSGLNNRDLKGSPPAGGP 187 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV----GTF 210 + + +A+D A+L+ + FP+ + + K N NW + + Sbjct: 188 EEENVMSAKDTAMLAKELINRFPEVLETASTPRKTFREGTDDEIKMENWNWMLPELVYGY 247 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGF 264 GADG+KTG T +G+ +A++ I+V++ A N +R + + GF Sbjct: 248 EGADGLKTGTTDFAGYCFTGTAMRDGNRYISVVMNAKGANGQATYKSRFDETKKMFDFGF 307 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNIS---EEVCTTQKEIINYNTQMKEAKD-KESHF 320 N T + I+ YQ VP ++V + K+ I + E ++ K Sbjct: 308 SNFTKEE----IVPANYQVKGQKTVPVTKGKEDKVKISSKDAIEMVVRNGEKENYKPVLV 363 Query: 321 IDFEKITLLKNKI 333 +D EK+ Sbjct: 364 LDKEKLNENGELT 376 >gi|161619123|ref|YP_001593010.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|254704458|ref|ZP_05166286.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|261755137|ref|ZP_05998846.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|161335934|gb|ABX62239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|261744890|gb|EEY32816.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] Length = 472 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|56417129|ref|YP_154203.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries] gi|56388361|gb|AAV86948.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries] Length = 380 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 5/275 (1%) Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 ++KLMT Y+VF L + ++S++A + S++ K G + + + + V S Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA + Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ + V+ G R + LL F + Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETK 276 >gi|121597580|ref|YP_989692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|167002262|ref|ZP_02268052.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] gi|121225378|gb|ABM48909.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei SAVP1] gi|243062001|gb|EES44187.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei PRL-20] Length = 511 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|163760868|ref|ZP_02167947.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43] gi|162281912|gb|EDQ32204.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43] Length = 441 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 98/324 (30%), Positives = 155/324 (47%), Gaps = 1/324 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 MA S A Y ++D TG + D PASLTK+MT Y+VF Sbjct: 1 MAFAGLAMALASGAALANSKYAGIVVDAKTGKTLYAYNADQLRFPASLTKMMTLYMVFEA 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L+++K L T I S NA++ PP+ G ++T++ A+ L+ KSAND + A+AE L Sbjct: 61 LEQRKIKLNTRIVFSANAAKEPPTKLGVGTGKSITVEQAIYALVTKSANDASTAVAEHLG 120 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E KF + M +++LG+S T F NAHG+ TTARDMA L ++ FP+ YF Sbjct: 121 GSEAKFARMMTAKARSLGMSRTTFRNAHGLPNSKQVTTARDMARLGIALREHFPRQYKYF 180 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + + N N +GT G DG+KTG+T ASGFN+V+S + ++S++AV++G Sbjct: 181 ATRSFKFGKTRLSNHNRLLGTVRGVDGIKTGYTRASGFNLVSSVVDRNRSIVAVVMGGRT 240 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 +RN L++ + R N I + + + + Sbjct: 241 GASRNAQMKKLIAGYLSKASTRGSGNLIARGAPSTISVAALELPKVGPVPNLRHKASARM 300 Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332 + A + + E + + Sbjct: 301 ALAYAAPSPAPVVGREALAQSLAE 324 >gi|295696433|ref|YP_003589671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] gi|295412035|gb|ADG06527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM 2912] Length = 403 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 10/256 (3%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L+D TG V+ PD P PAS+TK++TA V + L IT Sbjct: 35 PPDLAVRSAVLMDMKTGQVLYAKNPDEPHYPASITKILTAIVALE-----RGQLNDRITT 89 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S+ A+ + +G +L+ L +++ S ND AVAIAE + F MN T+ Sbjct: 90 SRLATLQDGNRIYLVEGEEHSLEELLYGMMLNSGNDAAVAIAEHYGGSVAGFAAMMNATA 149 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201 K +G THF N +G+ H TTA DM ++ R P + K GK++ Sbjct: 150 KEIGALHTHFTNPNGLHDPNHVTTAYDMCLIG-RYAMQNPIFRQIVATKTYPWHGKEWES 208 Query: 202 ---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + T+ GA G+KTG+T + +V SA +G++SLIA ++ + + ++ Sbjct: 209 ELVNINRMLWTYPGATGIKTGYTDQAQQTMVVSATRGNESLIATLMDIPGQEAMREEASK 268 Query: 259 LLSMGFYNKTDRKKIN 274 LL GF + ++ + Sbjct: 269 LLDWGFQHFATQRLAS 284 >gi|297528386|ref|YP_003669661.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] gi|297251638|gb|ADI25084.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3] Length = 452 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 155/381 (40%), Gaps = 52/381 (13%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDH 49 MR+ ++++ + PF + P L+D TG ++ E D Sbjct: 1 MRRRKQNWLFWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDT 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLD 105 AS+TK+MT Y++ +K K+ T S + SN +K T+ Sbjct: 61 VLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVR 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162 + + + SAN VAIAE + +EK FV+ MN+ +K LGL F+NA G+ Sbjct: 121 ELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKG 180 Query: 163 -----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206 + +AR MA+L++R+ D P+ + I + K N NW Sbjct: 181 FHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWM 240 Query: 207 V----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVS 256 + + G DG+KTG+T +G +A + LI+V++ A D + R K + Sbjct: 241 LPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKET 300 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV----CTTQKEIINYNTQMKE 312 L + GF + + + YQ +P + + T K + +E Sbjct: 301 EKLFNYGFNQYS----LETLYPKGYQLKGKETLPVVKGKDKEVRVATGKNLDLLVKNGEE 356 Query: 313 AKDKESHFIDFEKITLLKNKI 333 + K + +D +K+T + Sbjct: 357 KQYKPVYVLDKKKMTKEGKLV 377 >gi|269102681|ref|ZP_06155378.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162579|gb|EEZ41075.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 348 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 4/240 (1%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YP 90 +D +TG V+ E+ + NPASLTKLMT+YV +K+ + IS+NA + Sbjct: 1 MDYHTGRVLVEHNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFHD 60 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + G+ + + + + LI++S ND +VAIAE + ++ FV MN+ +K L ++ + Sbjct: 61 SSKMFIEVGAEVPMMDLFRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKKLNMNNS 120 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GT 209 F NAHG+ Y+T D+A+L + D P + K N N + + Sbjct: 121 RFANAHGLDHDDLYSTPYDIALLGQALIRDLPDIYPLYSEKSFTYNNITQRNRNGLLHDS 180 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + DGMKTG+T +G+++ +SA +GD LIAV++G R S LL+ GF Sbjct: 181 SMNVDGMKTGYTGGAGYSLASSATEGDMRLIAVVMGTKSPKIRQAESKQLLNYGFRFFDT 240 >gi|148653555|ref|YP_001280648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1] gi|148572639|gb|ABQ94698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1] Length = 413 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 3/244 (1%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L+D +TG ++AE D P PASLTK+MT++++ L + T P+ ++++A Sbjct: 64 AYILMDYDTGVILAEKNADQPLPPASLTKMMTSHIIEKKLMSGEMKETDPVLMTESAWCR 123 Query: 90 PPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S+ + + L+ +I++S ND + A+AE + +E F Q MN +K LG Sbjct: 124 GTSDQSCMYVPVNKSAPAIDMLRGIIIQSGNDASKAMAEHIAGSESAFAQIMNAEAKALG 183 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 ++ THF+NA G+ GH +ARD+AILS I Y + K N N Sbjct: 184 MTNTHFVNATGMPDEGHRASARDLAILSRAIIKQGGDYYKLYSEKEFTYNNITQGNRNAL 243 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + T DG+KTG T A+G+ + AS+ + D LI+VI+G+ R S LL+ GF + Sbjct: 244 LRTDPTVDGLKTGHTDAAGYCLAASSKRNDMRLISVIMGSKSMQARADQSRELLNWGFGH 303 Query: 267 KTDR 270 + Sbjct: 304 FDTK 307 >gi|323139480|ref|ZP_08074528.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis sp. ATCC 49242] gi|322395282|gb|EFX97835.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis sp. ATCC 49242] Length = 530 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 109/339 (32%), Positives = 176/339 (51%), Gaps = 13/339 (3%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ +A+ + + + + A + ++D +G V+ ++ W PASLTK Sbjct: 4 MKRLRRFGALAIFLAAVVTAGRAGATPS-----LVIDVASGQVLEQDQATASWYPASLTK 58 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMTAYV ++ + + TP+ +S A PS F+ GS +TL NAL +L+VKSAND Sbjct: 59 LMTAYVALDAVRAGRISMDTPLMMSPRACRMAPSKMGFRAGSEVTLHNALIMLMVKSAND 118 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAVAIAE + + + F MN S NLG++ + ++N +G+ T+ARD+AIL + Sbjct: 119 IAVAIAEGVSGSVEAFADEMNRASANLGMTQSQWVNPNGLPDSRQVTSARDLAILGRALY 178 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FP+Y + F I ++I G+ +P N +G + GADGMKTGFTC +GFN+VASA G Q Sbjct: 179 LQFPEYAYLFNIGAMQIGGRVHPTHNGLLGRYPGADGMKTGFTCPAGFNLVASATHGGQR 238 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 LIAV+LGA R +A+LL F + + + P++ ++VC Sbjct: 239 LIAVVLGAPSAAARTAKAAALLDRAFQTGSPIGTLASL-----PSVGPTAAPDMRDKVCR 293 Query: 299 TQKEI-INYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + ++++ + T++ Sbjct: 294 NRGAATAEFMAEVEDMSIPVGSAPTGIPLLDSMGAGTQR 332 >gi|148256123|ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. BTAi1] gi|146408296|gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1] Length = 590 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 142/245 (57%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G V+ PD +PASLTK+MT Y++F L K L T + +S++ASE P Sbjct: 62 IVVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQSP 121 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K L+ +SAND AV IAE++ E +F + M ++ LG+S T Sbjct: 122 TKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALGMSRTT 181 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++NA G+ TTARD +IL I+ FP+Y YF +G+ N N +G Sbjct: 182 YVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGNVE 241 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +LL+ R+ Sbjct: 242 GIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRR 301 Query: 272 KINYI 276 + I Sbjct: 302 TVAAI 306 >gi|254995301|ref|ZP_05277491.1| hypothetical protein AmarM_05055 [Anaplasma marginale str. Mississippi] Length = 370 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 5/275 (1%) Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 ++KLMT Y+VF L + ++S++A + S++ K G + + + + V S Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA + Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ + V+ G R + LL F + Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETK 276 >gi|297180929|gb|ADI17133.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma proteobacterium HF0070_03O15] Length = 370 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 137/264 (51%), Gaps = 4/264 (1%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + N+ + + Y L + NT V+A D P PASLTKLMT+YVV ++KE Sbjct: 2 LSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYVVADYIKE 61 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 LT IS NA + P S ++ + + + +K +I++S ND +VA+AE + +E Sbjct: 62 DFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALAEHVAGSE 121 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + F MN ++ LG+ T F NA G+ + T+A D+A+L+ + +FP + ++ K Sbjct: 122 ENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDHYRHYSQK 181 Query: 192 GLEIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G N N + + DG+KTG+T ++G+ +V SA++ L+AV+LG+ D Sbjct: 182 SFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVAVVLGSED 241 Query: 249 RNTRNKVSASLLSMGFYNKTDRKK 272 R ++L+ GF K Sbjct: 242 DK-RFNDVSNLMVYGFRYFKTEKL 264 >gi|306844035|ref|ZP_07476630.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] gi|306275790|gb|EFM57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] Length = 472 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 + +S+I P ++ + ++D NTG + D PASLTK+MT Y++F + Sbjct: 29 STVSSIAPAMAKGDNRYA--AIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIH 86 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ E L + Sbjct: 87 AGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGS 146 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+ YF Sbjct: 147 EERFAQMMTARARRLGMRKTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSR 206 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV++G Sbjct: 207 SSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGA 266 Query: 251 TRNKVSASLL 260 +R+ A L+ Sbjct: 267 SRDAHMAQLI 276 >gi|160942970|ref|ZP_02090208.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii M21/2] gi|158445664|gb|EDP22667.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii M21/2] Length = 410 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 2/240 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D +G V+ E D AS+TK+MT + F + + + T + +S++A Sbjct: 61 AAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHAYHM 120 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G TLD LK + V SAND AVA+AE + +E FVQ MN + LG+ Sbjct: 121 GGSQIWLEPGEQFTLDEMLKAVCVSSANDAAVAVAELVGGSEPAFVQQMNARAAELGMEH 180 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV 207 T F NA G+ GH +TARD+AI+S I T P+ +HY I ++G + NTN + Sbjct: 181 TTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTNKLL 240 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G G+KTG T +G I ASA + +LIAV+LGA R + + +LL GF Sbjct: 241 RRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLLDYGFAAY 300 >gi|90578192|ref|ZP_01234003.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] gi|90441278|gb|EAS66458.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14] Length = 459 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + L+D NTG +IA N + PAS TKLM Y+V L + L + + Sbjct: 97 FPPSLNARAFILIDANTGQIIASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVL 156 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + + A S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T Sbjct: 157 VPEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNAT 216 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 + LG+ THF G+ H++TA D+ +L I D+PQY H+F K E + P Sbjct: 217 AVKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGEHIMNDYPQYFHFFSQKYFEYNHIRQP 276 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQSLIAVILGALDRNTRNKVSASL 259 N N + T+ A GMKTG T A+G+++V+SA +L+AV+LG N S L Sbjct: 277 NFNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMNLVAVVLGTQSLNDVAAQSKGL 336 Query: 260 LSMGFY 265 + GF Sbjct: 337 FNYGFR 342 >gi|226323183|ref|ZP_03798701.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758] gi|225208373|gb|EEG90727.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758] Length = 425 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 11/262 (4%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 +++ + G V+ E D PAS+TK+MT ++F L + T +T S+ A Sbjct: 71 SAESAVIMEASGGQVLLEKNADEKKPPASVTKVMTLLLIFDALADGTITPDTEVTTSEYA 130 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S + G T+D +K + V SAND VA+AE + +E FV+ MN S LG Sbjct: 131 ASMGGSQVFLEAGEKQTVDTMIKCIAVASANDACVAMAEKIAGSEPAFVEKMNQRSAGLG 190 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF+N +G+ GH TTARD+A++S + T +PQ Y I I Sbjct: 191 MTNTHFVNCNGLDTEGHLTTARDIALMSRELITKYPQIEDYSTIWMENITHTTAKGSSEF 250 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 NTN + + A G+KTG T + F + A+A + ++IAV++ D TR K + + Sbjct: 251 GLSNTNKLIRQYEYATGLKTGSTSGAKFCLSATARKDGVNMIAVVMAEPDSKTRIKDAIA 310 Query: 259 LLSMGFYN---KTDRKKINYII 277 +L+ GF D K + I+ Sbjct: 311 MLNYGFGKCSIYQDEKALEKIV 332 >gi|209964991|ref|YP_002297906.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] gi|209958457|gb|ACI99093.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW] Length = 458 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 125/233 (53%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG ++ D PAS+TK+MT Y+ F L +K L + +S A+ P Sbjct: 64 IVIDAETGEILHAASADTRNFPASMTKMMTLYMTFDALDARKLTLDQRLKVSSRAAGMAP 123 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K G T+ ++ + L+ KSAND AV +AE++ TE +F + M + ++ LG+ T Sbjct: 124 SKLGLKPGETIRTEDCILSLVTKSANDCAVVLAEAIGGTETEFARMMTDRARALGMRRTT 183 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ G +TARDMA L+ + D +Y YF + KG + N N + + Sbjct: 184 FRNASGLPNAGQLSTARDMARLAQALIQDHAKYYPYFSTRQFTYKGVTHGNHNRLMARYR 243 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 G DG+KTGF ASGFN+ ASA++ + LI V+ G R+ A LL F Sbjct: 244 GMDGLKTGFIRASGFNLAASAVRDGRRLIGVVFGGETAVWRDNHMADLLDKAF 296 >gi|115525408|ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] gi|115519355|gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas palustris BisA53] Length = 584 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 142/252 (56%), Gaps = 2/252 (0%) Query: 22 IAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 +A + P + ++D NTG ++ N PD PASLTK+MT Y++F L+ K L + Sbjct: 45 VATESYSPAFASIIVDGNTGATLSANNPDALRRPASLTKIMTLYLLFERLEAGKLSLDSE 104 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 + +S++AS P+ + G T+ +++A+K L+ +SAND AV IAE++ E F + M Sbjct: 105 MDVSEHASIQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAEAIGGDEDDFAKLMT 164 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG++ T + NA G+ TTARD A L I+ FP+Y YF KG Sbjct: 165 KKARALGMTRTVYRNASGLPNDDQITTARDQATLGRAIQERFPRYYRYFATSVFVYKGHA 224 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G+ G DG+KTG+T ASGFN+V+S +G++ LI V+LG +R+ SL Sbjct: 225 IRNHNRLLGSVEGVDGIKTGYTRASGFNLVSSMRRGNRHLIGVVLGGRSGGSRDAAMRSL 284 Query: 260 LSMGFYNKTDRK 271 L+ R+ Sbjct: 285 LAENLDKAATRR 296 >gi|327189245|gb|EGE56423.1| putative serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 493 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 2/283 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 MA+ + ++ P Y ++D TG+V+ D PASLTK+MT Y+ F Sbjct: 1 MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A A+ E L Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y Sbjct: 121 GGSEDRFGQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 R+ +L++ + R + +I E P Sbjct: 241 SGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAPAMIETP 283 >gi|144901274|emb|CAM78138.1| Predicted peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Magnetospirillum gryphiswaldense MSR-1] Length = 425 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 106/266 (39%), Positives = 152/266 (57%), Gaps = 7/266 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D +G V+ ++ P +PASLTK+MT YV F L E K L +T+S+ A+ Sbjct: 51 IVVDATSGAVLEQDQAGQPRHPASLTKMMTLYVAFQALSEGKTSLNATLTVSERAAGQGG 110 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K G T+ L +ALK L+V+SAND AVAIAE + TE F Q M ++ LG++AT Sbjct: 111 SVLGLKTGKTIALADALKSLVVRSANDAAVAIAEHVAGTEDSFAQRMTEQARRLGMTATS 170 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F NA G+ GH TTARDMA+L+ +K DFPQ+ F + + P N V ++ Sbjct: 171 FRNATGLTAPGHLTTARDMAVLAMALKRDFPQHWPLFATTSMRWGSSQLPTVNGFVTSYP 230 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GA+G+KTGFTC +G+N+ A+A + +S IAVI+GA + R ++ SLL+ F Sbjct: 231 GAEGLKTGFTCPAGYNLAAAASRNGRSAIAVIMGAAAKEQRLALTTSLLNKAFAAPAQGN 290 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVC 297 I NL P++S +VC Sbjct: 291 LTQLI-------NLGQIAPDLSAQVC 309 >gi|138893689|ref|YP_001124142.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196251175|ref|ZP_03149851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|134265202|gb|ABO65397.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|196209316|gb|EDY04099.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 452 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 151/369 (40%), Gaps = 39/369 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLT 57 F+ ++++ + ++PF + + P L+D TG ++ E D AS+T Sbjct: 9 FVWLLSICLCLTLWPFQATVKAESAPLDIRADAAILVDAQTGRILYEKNIDAVLGIASMT 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIV 113 K+MT Y++ +K K+ T S + SN +K T+ + + + Sbjct: 69 KMMTEYLLLDAIKAKRVKWDQTYTPSDYVYRLSQDRSLSNVPLRKDGQYTVRELYEAMAI 128 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-------------- 159 SAN VAIAE + +EK FV+ MN K LGL F+N+ G+ Sbjct: 129 YSANAATVAIAEIIAGSEKNFVRMMNEKGKELGLKDYKFVNSTGLSNSDLKGFHPQGTSQ 188 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTF 210 + +AR MA L++R+ D P+ + I + + N NW + + Sbjct: 189 DEENVMSARAMATLAYRLLKDHPEVLETASIPKKLFREGTDDEIRMDNWNWMLPGLVYGY 248 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLLSMGF 264 G DG+KTG+T +G +A + LI+V++ A + R + + L + GF Sbjct: 249 EGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKNASGKTTKEARFEETKKLFNYGF 308 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 + + + ++ L E T K++ +E + K + +D + Sbjct: 309 NQYSLQTLYPKGYQLKGKEKLPVAKGKEKEVRVKTGKKLSLLVRNGEEKQYKPVYVLDKK 368 Query: 325 KITLLKNKI 333 K+T Sbjct: 369 KMTNEGKLT 377 >gi|283851675|ref|ZP_06368954.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] gi|283573005|gb|EFC20986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. FW1012B] Length = 362 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 1/249 (0%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L + +TG ++ E PD PASLTK++T Y++F +++ K + +S Sbjct: 93 PALTVKSAMLWNASTGELLYEQNPDFQIPPASLTKILTLYIIFDAIRQGKLRPWDVVDVS 152 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTS 142 + A+ S + G ++ + + +K + V SAND +A+A+ FV MN+T+ Sbjct: 153 ERAATQGGSTMRLRNGESVKVTDMIKGIAVASANDACMAMADYLEGGNVDAFVALMNDTA 212 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202 K LG+S + FMN +G+ G TTARDM L+ FP+ + ++ ++ N Sbjct: 213 KRLGMSNSVFMNPNGLPAEGQLTTARDMLRLASAYLEQFPKALSIHSLQFFSHNNRQRHN 272 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N + ++ G DG+KTGF CASG+NIVA+A +GD LIAV+LG+ R + +A LL Sbjct: 273 ANSLLASYEGCDGLKTGFVCASGYNIVATAKRGDTRLIAVVLGSRSPRVRQRETAKLLDK 332 Query: 263 GFYNKTDRK 271 GF RK Sbjct: 333 GFKLAAIRK 341 >gi|229133395|ref|ZP_04262223.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228650068|gb|EEL06075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] Length = 442 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVI-IAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I + + +I A +P L++ N+G ++ + D Sbjct: 12 KRFIAIGTVLTLFCSIVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+ H Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N NW + Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 +K Y + + + V N ++ Q + K KD KE + Sbjct: 312 FEVKKV--YGKDSVVKGHETVRVANAKDKDIVVQTKQAVSLPMPKGNKDVYKKEFKVSNK 369 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 370 EQEAPIKKGVT 380 >gi|83949599|ref|ZP_00958332.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM] gi|83837498|gb|EAP76794.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM] Length = 403 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 143/282 (50%), Gaps = 5/282 (1%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A + ++D TG V+ D P PAS++KLMT YV F +++ + +T Sbjct: 24 AARAFDTRATAAYVVDVGTGTVLLAKNADQPLPPASMSKLMTLYVTFEAIRDGRLSMTET 83 Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQH 137 + +S +A+ Y S + G +++++ L+ +IV S ND V +AESL TE F + Sbjct: 84 LPVSAHAARYGGSTLFLQAGERVSVEDLLRGIIVLSGNDACVVLAESLSPDGTEAGFARF 143 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M ++N+G++ + F N++G GH + RD+ +L+ ++ DFP++ F + Sbjct: 144 MTRRAQNMGMTNSAFTNSNGWPAPGHRMSMRDLGLLARKLIEDFPEFYPMFAEEEFLFDE 203 Query: 198 K---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 K N N +G +GADG+KTG T +G+ +V SA+Q + +I VI G R + Sbjct: 204 KESQNRYNRNPLLGLGIGADGLKTGHTAEAGYGLVGSAVQNGRRVIFVISGLASAEARAE 263 Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 + ++++ F +++ + ++ + + + E Sbjct: 264 EAEAIVNWAFRQFAEQQVVRGGVELARAKVWMGDATTVGLEA 305 >gi|119384494|ref|YP_915550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] gi|119374261|gb|ABL69854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans PD1222] Length = 568 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 4/279 (1%) Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D TG + D +PASLTK+MT Y+ F+ ++ + L + +S +A+ PPS Sbjct: 47 DARTGQEVYAQNADTRLHPASLTKMMTLYMAFNAIERGQVRLDSKFLVSSHAAAQPPSRL 106 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 K G + L ++ VKSAND A I E L +E KF M ++ LG+ T+F N Sbjct: 107 GLKPGQRIELRYLIRAAAVKSANDAATVIGEGLAGSEAKFAAQMTQMARALGMRNTNFRN 166 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGA 213 A+G+ GHY+TARDM +L R+ DFPQY F + + +TN + ++ GA Sbjct: 167 ANGLTAEGHYSTARDMTVLGRRLFYDFPQYYSIFSRRSADAGIATVASTNKRFLDSYEGA 226 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 DG+KTG+T A+GFN+ ASA +G + +IA +LG RN+V A LL GF R + Sbjct: 227 DGIKTGYTRAAGFNLTASAKRGSKRIIATVLGGTSTAHRNQVMAQLLDAGFGKAPTRVR- 285 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 +K Q ++ + + +V + N Q+ Sbjct: 286 --EVKPAPPQLVAEKKVRRTVQVARAEPRQAVANVQLST 322 >gi|323701270|ref|ZP_08112945.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] gi|323533872|gb|EGB23736.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum nigrificans DSM 574] Length = 414 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 23/305 (7%) Query: 2 RQFLVIIAMA-MLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ L +I + + P+ + A L+D TG V+ PAS TK Sbjct: 6 KKILSVIVIVWLCLGSIPYAWAGAPEISGEAAVLIDAGTGQVLYGKDEHKRMYPASTTKT 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 +TA V A LT +TI NA + ++ +G + L + L L++ SAND Sbjct: 66 LTALVALEH-----AKLTDLVTIGPNALQAGGTSIGLTEGEKIPLKDLLYALMLNSANDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 VAIAE + + +KF N +K +G THF N HG+ HY+TA D+A+++ + Sbjct: 121 GVAIAEHISGSVEKFAALSNQEAKKIGAKDTHFTNPHGMPDKNHYSTAYDLALIARQAMQ 180 Query: 180 DFPQYMHYFQIKGLEIK------GKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIV 229 ++ ++ K N N + + + G G+KTG+T +G ++ Sbjct: 181 -NQEFRRIVSTVHYQVSRADPNAQKYLFNHNKLLWSKIYGYQGTTGVKTGYTVEAGQCVI 239 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSN 287 ASA + + LIAV+L + N + LL GF N R+ + ++ + + Sbjct: 240 ASAQRDGRELIAVVLHSDGSNI-WSDATKLLDYGFTNFHSRQVVKGGQVMANIPVK--YG 296 Query: 288 EVPNI 292 + PN+ Sbjct: 297 KSPNV 301 >gi|218662722|ref|ZP_03518652.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771] Length = 289 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 137/261 (52%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + LS+ ++A+ +LD +G V+ + D PASLTK+M Sbjct: 1 MTKITTRLRATALSSALLMCAVAQAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 61 TLYLAFEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + D Sbjct: 121 VAIAEQLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G R+ A LL Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261 >gi|168186263|ref|ZP_02620898.1| penicillin-binding protein DacF [Clostridium botulinum C str. Eklund] gi|169295681|gb|EDS77814.1| penicillin-binding protein DacF [Clostridium botulinum C str. Eklund] Length = 392 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 165/343 (48%), Gaps = 32/343 (9%) Query: 4 FLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 FLV+ M+ + N+ A + L++ TG VI E + PAS+TK+MT Sbjct: 12 FLVVTLMSQFCIVNVMAADKTALDVEAKAGLLIEPTTGKVIFEKNVHEKFAPASVTKIMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPP---SNSTFKKGSTMTLDNALKLLIVKSAND 118 + + K L+ + +S+NA + S+ G T+++ LK + + S ND Sbjct: 72 MLLTMEAVDSGKIKLSDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGND 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + +E FV+ MN ++ LG+ T F N HG+ GH T+A D++I+S + Sbjct: 132 AATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSADGHLTSAYDISIMSRELL 191 Query: 179 TDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + Y I +G+K P N N V + G DG+KTGFT + + I A+A+ Sbjct: 192 K-HKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAV 250 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + + ++A+I+GA RN+ ++ L++ GF +K + + ++ Sbjct: 251 KNNIRMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVVT-------------KDTDVE 297 Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + E + +AKD + ++ +KNKITKK Sbjct: 298 KITLDKKGEKFFF----AKAKDDLNLVLERG----VKNKITKK 332 >gi|42520006|ref|NP_965921.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99035928|ref|ZP_01314975.1| hypothetical protein Wendoof_01000183 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409743|gb|AAS13855.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 368 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 7/276 (2%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 F S K +LD + I ++ D P+S++KLMT Y+ F +LK + Sbjct: 16 FSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHM 75 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+ A E S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV Sbjct: 76 EDKFRVSRKAWERRGSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVA 135 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NL L+ +HF+N+ G H+ A+D+ +L+ RI TDFP+Y F + L Sbjct: 136 EMNEVAQNLNLNDSHFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYN 195 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R + + Sbjct: 196 EIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEA 255 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 L+ + +K F + ++ EV + Sbjct: 256 KRLIQYSLNHFNTKKI-------FVKDSVVEEVNVL 284 >gi|255066778|ref|ZP_05318633.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC 29256] gi|255048853|gb|EET44317.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC 29256] Length = 417 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 1/245 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ V+A N D PASLTK+MTAY+ F L+ +T+S + Sbjct: 66 YIVTDLHSHQVLASNNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLSA 149 S ++ + +K +IV+S ND A +AE + FVQ MN +K LG++ Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N + Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTG T ++G+N+ AS+ + + ++++++G R S LL+ Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQAFDT 305 Query: 270 RKKIN 274 K N Sbjct: 306 PKLYN 310 >gi|291545871|emb|CBL18979.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5] Length = 395 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 20/333 (6%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + + P L++ TG VI PD +PAS+TK+MT ++F ++E L IT Sbjct: 35 AQQLIEAPGAVLMEKETGTVIYSRDPDTRRSPASITKIMTLILIFDAIREGTLHLEDSIT 94 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S A S ++G T + +K +++ S ND +VA+AE + TE+ FV+ MN Sbjct: 95 TSAYARSMGGSQVFLEEGEKQTAETMIKCIVIASGNDASVAMAEHVAGTEQAFVERMNER 154 Query: 142 SKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEI 195 +K+LG+ THF++ G+ + HYTT D+A++S + + +P+ + Y I + Sbjct: 155 AKDLGMKNTHFVDCCGLTESQEHYTTPYDIALMSRELISRYPEVLTYSSVWIEDITHVTR 214 Query: 196 KG---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 KG NTN + ++ G G+KTG T + + + A A + +LIA ++ A D TR Sbjct: 215 KGSSKFTLTNTNKLLRSYEGCMGLKTGSTSIAKYCLSAVAERNGITLIASVMAAPDPKTR 274 Query: 253 NKVSASLLSMGFYNKT-DRKKINYIIKDFY-QQNLSNEVPNIS----EEVCTTQKEIINY 306 + +A+LL+ GF T +K ++ + +VP + + T + N Sbjct: 275 FRDAAALLNYGFSKCTLYLDDALEPLKPLKLRKGVKEQVPLVYRGKFRYISTDGTKPDNV 334 Query: 307 NTQMKEAKD-----KESHFIDFEKITLLKNKIT 334 ++ K+ K+ ++ KI Sbjct: 335 KKKLILPKEQSAPVKKGQKAGAQEYYQDGKKIG 367 >gi|218663522|ref|ZP_03519452.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli IE4771] Length = 430 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 2/263 (0%) Query: 10 MAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 MA+ + ++ P Y ++D TG+V+ D PASLTK+MT Y+VF Sbjct: 1 MALTVVLVDSVNAEAKTANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMVFE 60 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND + A+ E L Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDASTALGELL 120 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y Sbjct: 121 AGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG Sbjct: 181 FSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240 Query: 248 DRNTRNKVSASLLSMGFYNKTDR 270 R+ +L++ + R Sbjct: 241 SGAARDAQMRNLIATYLPKASSR 263 >gi|75675657|ref|YP_318078.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74420527|gb|ABA04726.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 413 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 5/251 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P LL+ +G V+ E D P+S+ KLMTA VVF+ + + + LT IS+ Sbjct: 50 ETSAPTAILLEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVTKGEIKLTDEYVISE 109 Query: 85 NASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 N S S + + + L+ I++S ND +A+AE + E F + M Sbjct: 110 NTWRKGGAPSGGSTMFAAINSRIPVQDLLRGAIIQSGNDSCMALAEGIAGHESAFAEKMT 169 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG+S + F N+ G+ + T R++A L+ I +P + F + + Sbjct: 170 ARARELGMSRSTFANSSGLPHPDNKMTVRELAALARHIILTYPDFYKLFGEREFTWNKIR 229 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + GADG+KTG+T G+ +V S +Q LI V+ G + R + L Sbjct: 230 QSNRNALLAAMDGADGLKTGYTKEGGYGLVGSVVQNGTRLIVVVNGLESADYRLTAARKL 289 Query: 260 LSMGFYNKTDR 270 L GF N R Sbjct: 290 LEWGFRNFEVR 300 >gi|157825663|ref|YP_001493383.1| penicillin-binding protein dacF precursor [Rickettsia akari str. Hartford] gi|157799621|gb|ABV74875.1| penicillin-binding protein dacF precursor [Rickettsia akari str. Hartford] Length = 306 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 136/262 (51%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+V A +S + + ++D +G V+ + PASLTKLMT Y Sbjct: 11 FIVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRVYPASLTKLMTLY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F +++ K L + +S+ AS+ PP K G T+T+ A+ LI+KSAND AV + Sbjct: 71 LMFEAIEDGKLSLDQKLLVSQKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTV 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P+ Sbjct: 131 AEGMKGSEKAFAHLMNIKAKQLGMKNTYFKNASGWHDPLQLTTARDMAKLTMALKKDYPK 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y F +G N + GA+GMKTGF +G+N+V +A + +SLIAV+ Sbjct: 191 YYPLFSKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVV 250 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 G +R++ LL F Sbjct: 251 TGGKSAASRDQKMMWLLDQHFN 272 >gi|312113074|ref|YP_004010670.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium vannielii ATCC 17100] gi|311218203|gb|ADP69571.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium vannielii ATCC 17100] Length = 367 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 104/321 (32%), Positives = 165/321 (51%), Gaps = 10/321 (3%) Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 +L + FL A+ L + TG V+ D PW PASLTKLMTAY+ F ++ Sbjct: 11 LILCGMAAFLFGAQGAVAGPALLTEPATGLVLYAEDADLPWRPASLTKLMTAYLTFEAIR 70 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + + +T + + PPS G+ + +D A+K LIVKSAND+A+ +AE + + Sbjct: 71 DGRLSPEDMLTSTALSRSQPPSKFGLPLGAQIKVDLAIKALIVKSANDVAIMLAEKIGGS 130 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---------HGHYTTARDMAILSWRIKTDF 181 + FV MN T+K LG++ T F+N +G+ Q TTARDMA+LS I +F Sbjct: 131 SEAFVDQMNRTAKRLGMTNTKFVNPNGLPQFNPDGTETPEQAVTTARDMALLSNMILKEF 190 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY F + + + + + N + ++ GADGMKTGF CA+G+N+VASA + + L+A Sbjct: 191 PQYTPIFSMTEVRVGNRLLTSHNGILKSYDGADGMKTGFVCAAGYNVVASATRNGRQLVA 250 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP-NISEEVCTTQ 300 V+LG R +A+L GF + + + + + P ++ VC+ + Sbjct: 251 VVLGERSSGARTIRAAALFEHGFEIYPWKAVLAPTLATWPVETPEGAQPADMRGIVCSGR 310 Query: 301 KEIINYNTQMKEAKDKESHFI 321 K ++ + K + H Sbjct: 311 KPAVSAKQKSKRPASQPGHGA 331 >gi|225677145|ref|ZP_03788144.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590812|gb|EEH12040.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 368 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 7/276 (2%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 F S K +LD + I ++ D P+S++KLMT Y+ F +LK + Sbjct: 16 FSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHM 75 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+ A E S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV Sbjct: 76 EDKFRVSRKAWERRGSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVA 135 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NL L+ +HF+N+ G H+ A+D+ +L+ RI TDFP+Y F + L Sbjct: 136 EMNEVAQNLNLNDSHFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYN 195 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R + + Sbjct: 196 EIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEA 255 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 L+ + +K F + ++ EV + Sbjct: 256 KRLIQYSLNHFNTKKI-------FAKDSVVEEVNVL 284 >gi|209549573|ref|YP_002281490.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535329|gb|ACI55264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 291 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 5/260 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R ++ A+L F ++AE + + ++D +G V+ + D PASLTK+MT Sbjct: 7 RLLATALSSAVLLGAF---TLAEAGQASF--VVDAQSGQVLEASNQDDLNYPASLTKMMT 61 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+ F L E + +T+S+NA P G +TL A++ ++V SAND AV Sbjct: 62 LYLAFEALHEGRLTWDQKLTMSENAESKEPFKLAVGAGRQVTLREAVESIVVLSANDSAV 121 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE L +E+ F + M + ++ LG++ T F N G+ T+ARDMA L + DF Sbjct: 122 AIAEQLGGSEQAFAKAMTDKARQLGMTNTVFRNPSGLPDPEQVTSARDMATLGISLMRDF 181 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++ Sbjct: 182 PEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVG 241 Query: 242 VILGALDRNTRNKVSASLLS 261 V++G + R+ A LL Sbjct: 242 VVMGEKTASLRDDKMAGLLD 261 >gi|170744322|ref|YP_001772977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] gi|168198596|gb|ACA20543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp. 4-46] Length = 402 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 5/252 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 ++ P+ LLD ++G V+ E D P++PAS+ KLMT V+F +++ + + IS+N Sbjct: 36 SQAPHAILLDADSGSVLYEKNADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISEN 95 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A ++ S+ + S + L + L+ +IV+S ND A+A AE++ TE F Q MN Sbjct: 96 AWKHGGAGGGGSSMFAQLNSKVKLPDLLRGIIVQSGNDAAIAAAEAIGGTEDNFAQIMNR 155 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ +GL+ + F N G TARD+A L+ + +P F + + Sbjct: 156 HAREIGLTRSTFRNPTGYSAPDQKVTARDLAKLAIHLIETYPDEYKLFSEREFTWNKIRQ 215 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + LGADG+KTG+ SG+ + SA+Q Q LI V+ G + R S LL Sbjct: 216 QNRNPLLTMDLGADGLKTGYLEESGYGLTGSAVQNGQRLILVVSGLKKASDRAAESRKLL 275 Query: 261 SMGFYNKTDRKK 272 GF R+ Sbjct: 276 DWGFRAFEGRQV 287 >gi|254505026|ref|ZP_05117177.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia alexandrii DFL-11] gi|222441097|gb|EEE47776.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia alexandrii DFL-11] Length = 299 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 96/260 (36%), Positives = 143/260 (55%), Gaps = 3/260 (1%) Query: 9 AMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A A+ + P +S A +L+ TG + D P PASLTK+MT Y++ Sbjct: 38 AAAVQTASLPVVSYAPATAQERGFSALVLNAATGQELYAVNADAPRFPASLTKMMTLYML 97 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F + + L++P+ IS NA+ PP+ K GST++++ A + L VKSAND+ VA+AE Sbjct: 98 FESVSSGENRLSSPLNISANAASQPPAKIGLKAGSTISVEQAARALAVKSANDVGVAVAE 157 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F + M ++ LGLS T F+NA G+ TTARDMA L +K FPQY Sbjct: 158 NLAGSEAAFAREMTQKARALGLSRTRFVNATGLPDPAQVTTARDMAKLGLALKRRFPQYA 217 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 Y++ K G+ + TN +G G DG+KTG+ SG+N+VA+A +G + LI V++G Sbjct: 218 SYYRAKSFTYNGRTFRATNNLLGKVQGVDGLKTGYVRMSGYNLVATARRGGKQLIVVVIG 277 Query: 246 ALDRNTRNKVSASLLSMGFY 265 R+ L+ F Sbjct: 278 GQSETARDAEVTRLIEAHFQ 297 >gi|160880719|ref|YP_001559687.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160429385|gb|ABX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 450 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 8/245 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L++ +TGH+I PAS+TK+MT ++F L + +T +++S++A+ Sbjct: 99 AVVLMEGSTGHIIYSKNEIKELRPASITKIMTLLLIFDALDSGQIKMTDQVSVSEHAASM 158 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + T +D LK + + SAND +VA+AE + +E+ FV MN +K LG+ Sbjct: 159 GGSQVFLEPFETQDVDTMLKCISIASANDASVAMAEFIAGSEEAFVSKMNQKAKELGMDH 218 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YP 201 T+F+N +G+ HYT A D+A++S + P+ +Y + + Sbjct: 219 TNFVNCYGLDTDNHYTCALDVALMSRELIMKHPEISNYSTVWMDKFVHTTKRGQTEFGLN 278 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + ++ G G+KTG T + + + A+A + LIAV++ A D TR +A LL+ Sbjct: 279 NTNKLIKSYQGITGLKTGSTGLAKYCLSATARRDGMDLIAVVMAAPDTKTRFAEAAKLLN 338 Query: 262 MGFYN 266 GF N Sbjct: 339 YGFAN 343 >gi|23097466|ref|NP_690932.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22775689|dbj|BAC11967.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis HTE831] Length = 447 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 149/363 (41%), Gaps = 35/363 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L + ++ + +++ + + N+L L+D TG V+ PD PAS+TK+ Sbjct: 10 LLAVASILVFTSMLTATTTVQANELDLESESAILVDGETGKVLYAKNPDVALPPASMTKM 69 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKS 115 MT Y+V+ ++ T IS S ++ T+ + + + S Sbjct: 70 MTEYLVWEAIENGDITWDTTTEISDYPYSISANNSFSGVGLRQQQEYTVKELYEAMAINS 129 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------- 162 N +A+AE + +E +FV+ MN + +GL F+N+ G+ Sbjct: 130 DNATTIALAELIAGSESEFVKMMNEKGEEMGLQEFKFVNSTGLDNEDLGDNYPEGTNPND 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---------GTFLG 212 + +AR A+L + + D+ + + I + G+ N N+ + + G Sbjct: 190 TNLLSARSAALLGYHLVNDYEEALEISSIPQTDFGGQTINNWNYMLPHEGDNLASYYYEG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTGFT +G++ +A + Q LI V++ R + +A LL GF N + + Sbjct: 250 VDGLKTGFTDLAGYSFTGTAERNGQRLITVVMKTGSETERFEETAKLLDYGFSNFENTEL 309 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD--KESHFIDFEKITLLK 330 + ++ + + V E+ + + + KD + ID +++ Sbjct: 310 FSAGYQEEGHETIP--VAKGKEDQVSISLQDSVSVPIKADEKDLYHLEYNIDQDRLNEDG 367 Query: 331 NKI 333 + Sbjct: 368 ELV 370 >gi|325293678|ref|YP_004279542.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325061531|gb|ADY65222.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 433 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 1/273 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + A+A I + ++ +D NTG V+A D +PASLTK+MT Y+ F Sbjct: 14 VFALAFFCAILSLQASPAQAGYAHFI-MDANTGKVLAAQNADVLNHPASLTKMMTLYMTF 72 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L + I +S+N + PS ++G T T+ A+ +IVKSAND+A + + Sbjct: 73 EALHAGRIRWDQKIRMSRNGAAVIPSKLYVREGQTFTVREAVYGMIVKSANDMAEGMGDH 132 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 L +E +F Q M ++ LG++ T F NA G+ TTARDMA L ++ DFP+ Sbjct: 133 LGGSEAQFAQMMTRKARQLGMTKTVFRNASGLPSKSQVTTARDMAKLGLALQRDFPKEYG 192 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 F ++ +GK+ N + + G DG+KTG+T ASGFN+V++ + ++ V+LG Sbjct: 193 LFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGG 252 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 R+ A+LL + + ++ Sbjct: 253 KTARGRDAQMAALLDKAMPQASRSRNTEQLVAS 285 >gi|302389347|ref|YP_003825168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302199975|gb|ADL07545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 410 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 12/249 (4%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 L+D TG V+ E PAS TK+MT + K L+ + + + Sbjct: 38 ILMDVKTGKVLYEKNAHLKLEPASTTKIMTTVIALE-----KGKLSDTVVTGREPTLADG 92 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + ++G +TL+ L +++ S ND AVAIAE + + +F + MN ++ +G T+ Sbjct: 93 TRIYLEEGEKLTLEQMLYGMMLNSGNDAAVAIAEHIAGSVPEFAKLMNEKAREIGAKNTN 152 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYP----NTNW 205 F+N G+ HYTTA D+A++S + P++ K + +GK++ N N Sbjct: 153 FVNPSGLPDKNHYTTAYDLALISRYALLNHPEFRKIVSTKTFKIPWQGKEWDRLLINHNK 212 Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + + G DG+KTG+T ++G VASA + L+AV+L + RN + +LL GF Sbjct: 213 MLWRYEGTDGVKTGYTRSAGQTFVASATRNGWQLLAVVLKSQGRNI-YSDAQALLDYGFD 271 Query: 266 NKTDRKKIN 274 N + IN Sbjct: 272 NFEKKDVIN 280 >gi|160935972|ref|ZP_02083346.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC BAA-613] gi|158441214|gb|EDP18931.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC BAA-613] Length = 549 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 77/301 (25%), Positives = 143/301 (47%), Gaps = 31/301 (10%) Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++FL++ I + + + +FP + A + + ++D++TG V+ D P+ Sbjct: 6 MKRFLMLFICLCLCAGLFPITAAAAPEWPSDVSIQADAGIVMDSDTGTVLYGKNMDQPYY 65 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALK 109 PAS+TK++TA +V L +T S + E S++ +G +T+ + L Sbjct: 66 PASITKILTALIVLEQCD-----LNEMVTFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLY 120 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAN+ A A+A + + + F Q MN +++LG + +HF N G+ HYTTA D Sbjct: 121 ALMLASANESANALACHVSGSREAFAQLMNEKARSLGCTGSHFNNPSGLNDENHYTTAHD 180 Query: 170 MAILSWRIKTDFPQYMHYFQIKGL-------EIKGKKYPNTNWAVGT-----FLGADGMK 217 MA+++ P+++ + +G N + + + GA K Sbjct: 181 MALIARAAIQ-NPEFLTINGTRSYQLAPTKRTPEGGYVANHHKMLNKNEAVYYPGAFAGK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277 TG+T +G +V A + D +LIAV+L + + +L GF N + ++Y Sbjct: 240 TGYTSLAGNTLVTCARKNDMTLIAVVLNG--HQSHYSDTKALFDFGFRNFQSLRTVDYET 297 Query: 278 K 278 + Sbjct: 298 R 298 >gi|169632783|ref|YP_001706519.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii SDF] gi|169151575|emb|CAP00352.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii] Length = 439 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTQAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|310639559|ref|YP_003944317.1| d-ala-d-ala carboxypeptidase [Paenibacillus polymyxa SC2] gi|309244509|gb|ADO54076.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa SC2] Length = 462 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 32/308 (10%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+ Sbjct: 65 PPSLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTV 124 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 ++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T+ Sbjct: 125 NENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETA 184 Query: 143 KNLGLSATHFMNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQI 190 + +G+ T+F+N+ G+ + TARD A L+ I D P Y + I Sbjct: 185 QRMGMKNTYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTI 244 Query: 191 KGLEIK---GKKYPNTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + + N NW + + G DGMKTG T +G +A + Sbjct: 245 QSYKFRPTDKAPIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNG 304 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQNLSNEVP 290 LI+V++GA R +A +L+ GF N ++ + + + EVP Sbjct: 305 MRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVVAPKTVVKGVENVPVTKGTETEVP 364 Query: 291 NISEEVCT 298 ++++ + Sbjct: 365 IVTKDAVS 372 >gi|84499966|ref|ZP_00998232.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597] gi|84391900|gb|EAQ04168.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597] Length = 406 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 8/296 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + ++D T V+ + D P PAS++KLMT Y+ F L++ + L + +S Sbjct: 31 DTQARAAYVMDLTTRTVLLDKNADMPLPPASMSKLMTLYIAFEALRDGRLRLDEELPVSS 90 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTS 142 +A Y S + +++ L+ +IV S ND V +AE+L TE F ++M + Sbjct: 91 HAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTQRA 150 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---K 199 + +G++ + F N++G GH + RD+A+L+ R+ DFP + F + G+ Sbjct: 151 QKMGMTNSTFANSNGWPAAGHRMSMRDLALLAARLIEDFPNFYPLFAERTFAFDGRAPQN 210 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G +GADG+KTG T +G+ +V SA QGD+ +I + G R + S ++ Sbjct: 211 NTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDRRVIFALSGLPTTAARAQESEAI 270 Query: 260 LSMGFYNKTDR---KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 ++ F T + K + K V +E+ T ++ + E Sbjct: 271 INWAFRQFTQKSLLKAGETVTKATVHMGDVPTVSLTTEDDLTALLPVLAGDEIPAE 326 >gi|222148621|ref|YP_002549578.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] gi|221735607|gb|ACM36570.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] Length = 484 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKL 59 MR V + +A++ + Y ++D N G V+ D PASLTK+ Sbjct: 17 MR---VSLTVALVCATLVAPAPEAAAASRYADIVVDVNNGKVLRATDADSLRYPASLTKM 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+VF L++ + L + + +S +A+ PPS + G + T++ ++ L+ +SAND Sbjct: 74 MTLYLVFEALEKGRIRLNSSVPVSAHAASEPPSKLGLRPGGSFTVEQGIQALVTRSANDA 133 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A E L +E +F Q M + ++ LG+S T + NA+G+ G TTARD A L ++ Sbjct: 134 ATAFGEYLGGSEARFAQMMTSKARALGMSRTTYRNANGLPNSGQMTTARDQARLGMALRQ 193 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FPQY YF + + N N +G+ G DG+KTGFT ASGFN+V S +S+ Sbjct: 194 HFPQYYAYFSTRSFTYGRQVIGNHNRLIGSVRGVDGIKTGFTNASGFNLVTSLQIDGKSV 253 Query: 240 IAVILGALDRNTRNKVSASLL 260 + V+LG R+ L+ Sbjct: 254 VGVVLGGASGAARDNQMRKLM 274 >gi|118591400|ref|ZP_01548798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM 12614] gi|118436072|gb|EAV42715.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM 12614] Length = 457 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 149/242 (61%), Gaps = 1/242 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y L+D ++G VI E W PASLTKLMTAYV F ++E +A L + + SKN++ Sbjct: 14 AYVLIDASSGAVIEEENATRKWYPASLTKLMTAYVTFKAIREGRASLDSAVVQSKNSAAE 73 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PPS FK G+ T+D ALK++++KSAND+AVA+ E++ +E F+ MN ++ LG++ Sbjct: 74 PPSKMGFKVGTRFTVDTALKIILIKSANDVAVALGEAIGGSEAGFIAMMNVEAQRLGMTN 133 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVG 208 T F N HG+ + TTARD+AIL+ ++ DFP+ +++ G+ K + N + Sbjct: 134 TRFYNPHGLPDNRQVTTARDLAILALALRRDFPEARNFYDHPGIRFGKKTLRSANREFLL 193 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 GA+GMKTG+ C SG+N+ ASA +G+++LIA+ILGA R + L GF + Sbjct: 194 RVPGANGMKTGYICNSGYNVAASATRGNKTLIAIILGAGSGLERTAFARQLFDEGFRKRG 253 Query: 269 DR 270 R Sbjct: 254 GR 255 >gi|260549669|ref|ZP_05823886.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624] gi|260407186|gb|EEX00662.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624] Length = 439 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|225390069|ref|ZP_03759793.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme DSM 15981] gi|225043871|gb|EEG54117.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme DSM 15981] Length = 382 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 140/275 (50%), Gaps = 13/275 (4%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 P L++ +TG VI E D +PAS+TK+MT ++F L+ K +T + S A Sbjct: 17 PSALLMEASTGQVIYEKDADQKRSPASITKIMTLILIFDALESGKIKMTDEVVTSAYAKS 76 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S ++G T++ +K +I+ S ND +V +AE + TE++FV+ MN + LG++ Sbjct: 77 MGGSQVFLEEGEKQTVETLIKCIIIASGNDASVTMAEYIGGTEQEFVRMMNERAAGLGMT 136 Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------- 199 THF++ G+ H TTARD+AI+S + +PQ +Y I I Sbjct: 137 NTHFVDCCGLTDSPDHVTTARDIAIMSRELINRYPQIHNYSTIWMENITHVTKQGTKEFG 196 Query: 200 YPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 NTN + T G+KTG T + + + A+A + LIAV++ A D R + Sbjct: 197 LSNTNKLLKMATNFTVTGLKTGSTSLAKYCLSATAEKDGVRLIAVVMAAPDFKARFADAQ 256 Query: 258 SLLSMGFYNK--TDRKKINYIIKDFYQQNLSNEVP 290 ++L+ G+ N + K++ + + ++++VP Sbjct: 257 TMLNYGYANCRLYEDKEMLPLPQMAVTGGVADQVP 291 >gi|315644241|ref|ZP_07897411.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315280616|gb|EFU43905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 330 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 31/296 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50 M++ + + M +L + P ++ L+D NTG ++ D P Sbjct: 1 MKKRWLWLVMVLLITV-PIGAVVIGNIERAGFRPKVDARAVVLMDLNTGRILLSENGDIP 59 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS++KLMT V+ +K K + IS AS K G +T+ + Sbjct: 60 LPPASMSKLMTELVILDDIKTGKKSWDDEVQISDTASGVSGIKIALKSGEFLTVRELFQS 119 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQH-------- 161 + V SAND AVA+AE +E+ FVQ MN +K +G+ S+THF+NA GV H Sbjct: 120 ITVYSANDAAVALAEHFAGSEEAFVQKMNAKAKEIGMSSSTHFVNASGVESHTDNDQEWS 179 Query: 162 ---GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV------GTF 210 TA D A L+ + P + +I G+ NTNW + ++ Sbjct: 180 SERETVMTAEDTAKLAAHLIKSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSY 239 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G DG+KTG+T +G+ +A + LIAV++G + R + + L GF Sbjct: 240 EGTDGLKTGYTVNAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFAK 295 >gi|304391674|ref|ZP_07373616.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130] gi|303295903|gb|EFL90261.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130] Length = 384 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 5/259 (1%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + + ++D TG V+ + D PAS+ KLMT VVF +K L Sbjct: 19 AFAQSFETAAKQAIVMDYETGSVLFQKNADELMPPASMAKLMTMEVVFDAVKRGALELDD 78 Query: 79 PITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 TISK+ + S + L+N ++ +IV+S ND A+AIAE + +E Sbjct: 79 TFTISKDVWQRGGATSGGSTMFADLNDDIALENLIRGVIVQSGNDAAMAIAEGMAGSETG 138 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 F MN ++ +GL ++F N+ G+ TAR++ +L+ + +P+ + Sbjct: 139 FAGLMNQRARRIGLEKSNFTNSTGLPDPNQRVTARELGLLARHLIRTYPELYQIYAEPEF 198 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + N N +G GADG+KTG+T ASG+ + ASA GD+ +I V+ G + R Sbjct: 199 TWNKVRQRNRNPILGRVDGADGLKTGYTEASGYGLTASAKVGDKRIIIVLNGMSSQAERR 258 Query: 254 KVSASLLSMGFYNKTDRKK 272 + ++ F K Sbjct: 259 NEAIKMMRWAFRAFQSIKL 277 >gi|51892723|ref|YP_075414.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51856412|dbj|BAD40570.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 401 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 31/289 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAENY 46 R+ + + A+L + A + +Y L+D TG V+ E Sbjct: 5 RRAIAGMIAALLLISGAEAAAAPRPLVDHYRDVVESPPSLWAHGAILMDAATGDVLWERN 64 Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106 +PAS TK++TA + + L +T+SK A++ P S+ ++G TL + Sbjct: 65 AHVRLHPASTTKVLTALIALE-----RGDLDARVTVSKRAAQTPGSSMYLREGEVHTLHD 119 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + L++ S ND AVAIAE + + + F MN ++ LG +HF+N HG+ H +T Sbjct: 120 LVHGLLMLSGNDAAVAIAEHIAGSVEAFADLMNERAERLGARNSHFVNPHGLTHPEHLST 179 Query: 167 ARDMAILSWRIKTDFPQYMHYFQ--IKGLEI----KGKKYPNTNWAV-GTFLGADGMKTG 219 A D+A+++ P + K L + NTN + G GADG+KTG Sbjct: 180 AYDLAVITRAALQ-NPLFAEIVAAPQKELTYEELGRKVVLYNTNRLLRGGLPGADGVKTG 238 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T A+G ++ASA + DQ LIAV+L A + R + SA+LL GF N Sbjct: 239 TTGAAGPCLIASATRDDQKLIAVVLNASN---RWRESAALLEWGFRNFA 284 >gi|153009406|ref|YP_001370621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561294|gb|ABS14792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 398 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 138/273 (50%), Gaps = 6/273 (2%) Query: 6 VIIAMAM-LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 V +A+A+ ++++ + A K P L+D +G V+ + P PASL KLMTA V Sbjct: 18 VSLAVAVPVASLAAPVEAAFVTKAPQVLLVDDRSGTVLLSKNANVPIPPASLVKLMTAEV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF L++ L TP T+S+NA S + ST T+ + L+ +IV+SAND Sbjct: 78 VFEALEQGATTLGTPYTVSENAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDG 137 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ +AE L +E+ F MN+ +K LGL + F+N+ G+ G + +D+ L+ I+T Sbjct: 138 AIVLAEGLAGSEQAFADRMNDRAKELGLIGSKFVNSTGLPAEGQVVSLQDLVRLARHIRT 197 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+Y Y+ N N + +GADGM TGFT ASGF +V SA Q + L Sbjct: 198 AHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRL 257 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + G R + + LL G D + Sbjct: 258 YLAMSGLASIKEREEEAKRLLQWGMTAFDDVQL 290 >gi|74316284|ref|YP_314024.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus denitrificans ATCC 25259] gi|74055779|gb|AAZ96219.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus denitrificans ATCC 25259] Length = 377 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 22/319 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +FL + +LS ++ + ++D +G +A + PD P PASLT+LMT Sbjct: 8 KFLWLTLAWLLS--ASAIAAPTGIAARAWVIVDQTSGRELASHQPDLPLAPASLTQLMTV 65 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 YV+ ++ L + + A+E + K G + +D L+ ++V+SA+D V Sbjct: 66 YVLLGDIRRNALRLDAEVRVPDAAAEADGARVFLKPGERVRVDTLLRAILVQSASDATVT 125 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +A + +E FV+ MN + LG+ THF NA G+ Q GH ++ARD+A+L + + P Sbjct: 126 LATATDGSEAAFVERMNREAARLGMKRTHFANATGLAQPGHVSSARDLAVLGRALLREHP 185 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 F K + G Y N N + G+K G SG++ VASA +G+Q +AV Sbjct: 186 AQQALFAQKEFTLDGLTYYNANRLLWRDGTVTGLKVGRNPESGYSAVASAQRGEQRRVAV 245 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTD------RKKINYI--------------IKDFYQ 282 +LGA R + + LL+ GF R+ + + +DF+ Sbjct: 246 VLGARSDAQRTQDALRLLNYGFEKFDSVLLYRARQPVKVVRLYRGTRQSVGIGFEQDFHL 305 Query: 283 QNLSNEVPNISEEVCTTQK 301 +P + E+ T + Sbjct: 306 LAPRGSLPRVKAEIVTQRP 324 >gi|120601649|ref|YP_966049.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris DP4] gi|120561878|gb|ABM27622.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Desulfovibrio vulgaris DP4] Length = 441 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 5/315 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V++ + + +E + L+D N+ V+ E D PASLTK+++ YV Sbjct: 19 IVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPASLTKVISMYV 78 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 ++ KA L + IS A+ S +G T++LD L + V S ND +VA+A Sbjct: 79 ALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSGNDASVAVA 138 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + +FVQ MN ++ LG++ T F N +G+ G TTARDM L+ T PQ Sbjct: 139 EHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVNYLTAHPQA 198 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + Y + + N N +G GADG+KTG+ CASG+N++++ +G+ L+AV+L Sbjct: 199 LRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGNTRLVAVVL 258 Query: 245 GALDRNTRNKVSASLLSMGFYN-----KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 GA + R + L+ G+ + + + + Y+ +L EV Sbjct: 259 GAENSQVRGQEMNRLIDAGYRSLRGEGPSVAAVLPRLSPADYRIDLHKTNSLAYAEVSKH 318 Query: 300 QKEIINYNTQMKEAK 314 +K+I +++ K Sbjct: 319 KKKIAARKGKLRAGK 333 >gi|218671981|ref|ZP_03521650.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56] Length = 277 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 88/261 (33%), Positives = 136/261 (52%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + LS+ + A+ ++D +G V+ + PD PASLTK+M Sbjct: 1 MTKTTSRLRATALSSALLMGAFAQAEAGQASFVVDAQSGQVLEASNPDDLNYPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L E + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 61 TLYLAFEALHEGRLTWEQKLTMSENAESKEPFKLAVGAGRRVTLREAVESIVVLSANDSA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D Sbjct: 121 VAIAEQLGGSEQAFAKTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G R+ A LL Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261 >gi|304321612|ref|YP_003855255.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] gi|303300514|gb|ADM10113.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis HTCC2503] Length = 423 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 1/272 (0%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + ++ + + + L+ K Y + +TG V+ + Y P PASLTK+MT Sbjct: 6 KSVKSLLITIIFATVLSPLAAHANPKYAAYI-IHADTGDVLFDRYSTEPRYPASLTKMMT 64 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y++F ++E + TT + +SK AS P S K G+T+ +D A++ L++KSAND+A Sbjct: 65 LYLLFEAIEEGRVSRTTDMKVSKRASLQPASKLGVKSGTTIDVDTAIRALVIKSANDVAT 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AE L +E KF + M +++LG+ T F NA G+ TTARDMAILS R+ DF Sbjct: 125 VTAEHLAGSEAKFARLMTQKARDLGMRQTVFRNASGLPDDRQVTTARDMAILSQRLVQDF 184 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P + HYF + G+ Y + N GADG+KTG+T ASG+N+ + +GD LI Sbjct: 185 PDFFHYFDDDSFQWGGRTYKSHNKVTQDLKGADGLKTGYTRASGYNLATTVRRGDHRLIG 244 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 ++LG TRN +++ + + + R + Sbjct: 245 IVLGGRSGRTRNAHMIEIMNKAYADISARPSL 276 >gi|323164088|gb|EFZ49896.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G] gi|332761340|gb|EGJ91626.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2747-71] Length = 284 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 16/274 (5%) Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51 M++ + A+ NI + Y L+D N+G V+AE D Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLD 105 +PASLTK+MT+YV+ +K K T +TI +A S K G + + Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 ++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+ Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCAS 224 +ARDMA++ + D P ++ K G + N N + L DG+KTG T + Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 G+N+VASA +G LI+ ++G R S + Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKN 283 >gi|46581059|ref|YP_011867.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450480|gb|AAS97127.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234737|gb|ADP87591.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris RCH1] Length = 441 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 5/315 (1%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +V++ + + +E + L+D N+ V+ E D PASLTK+++ YV Sbjct: 19 IVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPASLTKVISMYV 78 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 ++ KA L + IS A+ S +G T++LD L + V S ND +VA+A Sbjct: 79 ALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSGNDASVAVA 138 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 E + + +FVQ MN ++ LG++ T F N +G+ G TTARDM L+ T PQ Sbjct: 139 EHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVSYLTAHPQA 198 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + Y + + N N +G GADG+KTG+ CASG+N++++ +G+ L+AV+L Sbjct: 199 LRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGNTRLVAVVL 258 Query: 245 GALDRNTRNKVSASLLSMGFYN-----KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 GA + R + L+ G+ + + + + Y+ +L EV Sbjct: 259 GAENSQVRGQEMNRLIDAGYRSLRGEGPSVAAVLPRLSPADYRIDLHKTNSLAYAEVSKH 318 Query: 300 QKEIINYNTQMKEAK 314 +K+I +++ K Sbjct: 319 KKKIAARKGKLRAGK 333 >gi|261364923|ref|ZP_05977806.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC 25996] gi|288566708|gb|EFC88268.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC 25996] Length = 417 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 1/245 (0%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 Y + D ++ V+A + D PASLTK+MTAY+ F L+ +T+S + Sbjct: 66 YIVTDLHSHQVLASSNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLSA 149 S ++ + +K +IV+S ND A +AE + FVQ MN +K LG++ Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N + Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTG T ++G+N+ AS+ + + ++++++G R S LL+ Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQAFDT 305 Query: 270 RKKIN 274 K N Sbjct: 306 PKLYN 310 >gi|296132902|ref|YP_003640149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR] gi|296031480|gb|ADG82248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR] Length = 372 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 17/280 (6%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++F +I L L+ L+D NTG V+ PAS TK Sbjct: 1 MKRFRAGIIFFTIFLLKANTCLAWQPAVSADAAVLMDANTGQVLYAKNAHKRRPPASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++T + + +S A+ S+ G +TLD ++ ++KS ND Sbjct: 61 ILTGILALDM-----GNPAETVVVSPRAAAVGESSIYLSAGEKLTLDELIQGALMKSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AIAE + + + F Q MN +K LG ++F+N HG+ HY+TA D+A+++ R Sbjct: 116 ACAAIAEHIGGSIEMFSQLMNLKAKMLGAWNSNFINPHGLPAKNHYSTAYDLALIA-RYA 174 Query: 179 TDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 ++ K EI + NTN + ++ ADG+KTG T A+G +V+SA Sbjct: 175 MQNRRFAEIVAQKEKEIDWYGQSWNRHLKNTNKLLWRYIWADGIKTGTTKAAGQCLVSSA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + + LIAV+L + D R S L GF N ++ Sbjct: 235 SKDCRKLIAVVLKSGD---RYGDSIQLFEYGFNNYYYQQV 271 >gi|114327736|ref|YP_744893.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] gi|114315910|gb|ABI61970.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter bethesdensis CGDNIH1] Length = 419 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 16/331 (4%) Query: 18 PFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P S A T PY ++D NTG + + D P+S+TKLMTAY+V+ LK Sbjct: 57 PQGSPANTPFGPYDTVAKWAVVVDFNTGATLLDKEADVQMPPSSMTKLMTAYIVYGELKA 116 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K + + +S+ A S ++ +++ ++ +IV S ND + +AE + +E Sbjct: 117 GKLQMDQMLPVSEKAWRLQGSKMFVPYPGSVKVEDLIRGMIVDSGNDACIVLAEGIAGSE 176 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 ++FV MN +K LGL+ ++F N G+ H+ + RD+A L+ RI DFP+Y H+ K Sbjct: 177 QQFVDLMNQKAKLLGLTNSNFENCTGMPSANHHMSVRDIATLARRIIQDFPEYYHFDSEK 236 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + N N V + ADG+KTG T A G+ + ASA + + +I V+ G + Sbjct: 237 TFKYNNIEQQNRNPLVQKGI-ADGLKTGHTDAGGYGVCASAERNKRRVILVVNGLTTSHQ 295 Query: 252 RNKVSASLLSMGFYNKTDRKK---INYIIKDFYQQNLSNEVPNI-SEEVCTT-----QKE 302 R S LL F + + I S VP + +++ T QK+ Sbjct: 296 RASESERLLEWAFSQFENVTLFTAGDTIDSAPVYLGTSKTVPLVGGKDLVVTMPRQWQKK 355 Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + + + +T+ + + Sbjct: 356 AKISISYDAPVRAPVTKGAALGTLTISGDGV 386 >gi|146341457|ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp. ORS278] gi|146194263|emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS278] Length = 586 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 142/245 (57%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G + PD +PASLTK+MT Y++F L K L T + +S++ASE P Sbjct: 61 IVVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHASEQSP 120 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K L+ +SAND AV IAE++ E +F + M +++LG+S T Sbjct: 121 TKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLGMSRTT 180 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 ++NA G+ TTARD +IL I+ FP+Y YF +G+ N N +G Sbjct: 181 YVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHLLGNVE 240 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +LL+ ++ Sbjct: 241 GIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEKGATKR 300 Query: 272 KINYI 276 + + Sbjct: 301 TVAAV 305 >gi|154253237|ref|YP_001414061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] gi|154157187|gb|ABS64404.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum lavamentivorans DS-1] Length = 558 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 133/259 (51%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +I + +L + + ++D +G V+ D PASLTK+MT Y+ Sbjct: 23 FCLICLFLLFGLLVAAPVQAAAPKEAALVIDAYSGKVLYARSADEYRYPASLTKVMTLYL 82 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 +F L+ + L + IT++ + PPS + G T+++++A+ L+ +SAND+A A Sbjct: 83 LFEKLQAGEVTLKSRITMTPRGAGMPPSKLGLRAGQTLSVEDAILALVTRSANDVASATG 142 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 + TE F M ++ LG++ T + NA G+ TTARD A L+ RI+ DFPQY Sbjct: 143 AFIAGTEDDFAALMTKKARALGMTRTTYKNASGLPNSAQKTTARDQATLAKRIREDFPQY 202 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 HYF + + N N +G + G G+KTG+T ASGFN+ A+ + ++ LI V++ Sbjct: 203 YHYFSTEYFAWGKARIRNHNRLLGEYKGTTGLKTGYTNASGFNLTATVERDNKFLIGVVM 262 Query: 245 GALDRNTRNKVSASLLSMG 263 G R+ +L Sbjct: 263 GGKQAKLRDAHMIEILDRA 281 >gi|159185157|ref|NP_355279.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium tumefaciens str. C58] gi|159140428|gb|AAK88064.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium tumefaciens str. C58] Length = 431 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 135/257 (52%), Gaps = 1/257 (0%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + A+ I + ++ +D NTG V+A D +PASLTK+MT Y+ F Sbjct: 14 VFALTFFCAILSLQASPAQAGYAHFI-MDANTGKVLAARNADVLNHPASLTKMMTLYMTF 72 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 L + IT+SKN + PS ++G T T+ A+ +IVKSAND+A + + Sbjct: 73 EALHAGRLRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDH 132 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 L +E +F + M ++ LG+S T F NA G+ TTARDMA L ++ DFP+ Sbjct: 133 LGGSEARFAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYG 192 Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 F ++ +GK+ N + + G DG+KTG+T ASGFN+V++ + ++ V+LG Sbjct: 193 LFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGG 252 Query: 247 LDRNTRNKVSASLLSMG 263 +R+ A+LL Sbjct: 253 KTARSRDAQMAALLDKA 269 >gi|307946404|ref|ZP_07661739.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] gi|307770068|gb|EFO29294.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp. TrichSKD4] Length = 492 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 R ++ + +++ + + Y ++D TG + + D PASLTK+M Sbjct: 11 RHVRIVGSALLIAGMTAAGTAPAAANSKYAGIVVDAKTGKTLYADSADAYRYPASLTKIM 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+VF L+ + L + +SKNAS+ PPS + G T+ + +A+ L+ KSAND+A Sbjct: 71 TLYIVFEELEAGRLSLNSKFKVSKNASKEPPSKIGLRPGQTIKVKDAILALVTKSANDVA 130 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AE++ +E KF + M NT++ LG+ T F NAHG+ TTARDM+ L I+ Sbjct: 131 TTVAENIAGSEAKFAKRMTNTARQLGMKRTTFRNAHGLPNSRQRTTARDMSRLGIAIQER 190 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y YF + KG++Y N N +G G DG+KTG+ ASGFN+V S + + ++ Sbjct: 191 FPKYYKYFNTRVYSYKGRRYGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRNGRHIV 250 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 AV++G +RN+ +L+ + + +K ++ +Q Sbjct: 251 AVVMGGRTGASRNRHMTNLIGRYLHKASKGRKSAPLVAKVKRQP 294 >gi|319783686|ref|YP_004143162.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169574|gb|ADV13112.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 469 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 154/314 (49%), Gaps = 3/314 (0%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L + + L+ F F +A + ++D TG V+ + PASLTK+MT Y Sbjct: 16 LKTMMIIALAMTFVFGDVASSLAAKQAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F + + K TP+ S AS P+ K G ++T++ A+ ++ KSAND A A+ Sbjct: 76 LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVETAILSIVTKSANDSATAL 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E L E F + M ++ LG++ T F NA+G+ G +TTARDMA L ++ FPQ Sbjct: 136 GEMLGGNETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y YF + ++ N +G G DG+KTG+T ASGFN+V+S G++ ++ V+ Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRIVGVV 255 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS--NEVPNISEEVCTTQK 301 +G +R+ ASL++ + R + + K ++ +V + T Sbjct: 256 MGGSSGRSRDNQMASLINTYLPRASTRGGGDLVAKAGGNNPVTALAQVLLPKHDAPTPDD 315 Query: 302 EIINYNTQMKEAKD 315 + + A+D Sbjct: 316 KPVVAQDDATVAED 329 >gi|302386799|ref|YP_003822621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium saccharolyticum WM1] gi|302197427|gb|ADL04998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium saccharolyticum WM1] Length = 411 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + P L++ +TG +I E D +PAS+TK+MT ++F L K LT + S Sbjct: 51 PALQSPSAVLMEASTGQIIYEKNADEKRSPASITKIMTLILIFDALDSGKIKLTDEVVTS 110 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +A S ++G T+D +K +++ S ND +VA+AE + TE +FV+ MN + Sbjct: 111 AHAKSMGGSQVFLEEGEVQTVDTLIKCIVIASGNDASVAMAEYIAGTEDEFVKMMNERAA 170 Query: 144 NLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 LG++ THF + G+ + G H TTARD+A++S + +PQ +Y I I Sbjct: 171 GLGMTNTHFEDCCGLTESGTHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQG 230 Query: 200 -----YPNTNWAVG--TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTN + T G+KTG T + + + A+A + LIA I+ A D R Sbjct: 231 TKEFGLSNTNKLLKMATNFNVTGLKTGSTSVAKYCLSATAEKDGVRLIASIMAAPDYKIR 290 Query: 253 NKVSASLLSMGFYN 266 + +LL+ G+ N Sbjct: 291 FADAQTLLNFGYAN 304 >gi|261214059|ref|ZP_05928340.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|260915666|gb|EEX82527.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] Length = 416 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 134/260 (51%), Gaps = 6/260 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 23 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 77 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 78 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 138 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 198 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVG 257 Query: 242 VILGALDRNTRNKVSASLLS 261 V+LGA R+ A LL+ Sbjct: 258 VVLGAGSAGQRDGQMAKLLT 277 >gi|225629999|ref|YP_002726790.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi] gi|225591980|gb|ACN94999.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi] Length = 368 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 7/276 (2%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 F S K +LD + I ++ D P+S++KLMT Y+ F +LK + Sbjct: 16 FSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHM 75 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+ A E S+ K+G +T+ L+ + + S ND + +AE + +E+ FV Sbjct: 76 EDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDACITLAEGIAGSEENFVA 135 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++NL L+ +HF+N+ G H+ +A+D+ +L+ RI TDFP+Y F + L Sbjct: 136 EMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFTDFPEYYDLFSEQYLTYN 195 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R + + Sbjct: 196 EIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEA 255 Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 L+ + +K F Q ++ EV + Sbjct: 256 KRLIQYSLNHFNTKKI-------FAQDSVVEEVNVL 284 >gi|116252287|ref|YP_768125.1| penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] gi|115256935|emb|CAK08029.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 523 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 137/261 (52%), Gaps = 3/261 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + L I+++A+ + ++ P Y ++D TG+V+ D PASLTK+M Sbjct: 26 RLLAILSVAVTIVMVDSVNADAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145 Query: 121 VAIA-ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 146 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 205 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+ Sbjct: 206 HFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 265 Query: 240 IAVILGALDRNTRNKVSASLL 260 + V++G R+ +L+ Sbjct: 266 VGVVMGGASTPARDAQMRNLI 286 >gi|190892030|ref|YP_001978572.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|218516887|ref|ZP_03513727.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3] gi|190697309|gb|ACE91394.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 290 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 135/261 (51%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + LS+ A+ ++D +G V+ + D PASLTK+M Sbjct: 1 MTKMTSRLRATALSSALLISGFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 61 TLYLAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + D Sbjct: 121 VAIAEQLGGSEQAFAKAMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G R+ A LL Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261 >gi|239906564|ref|YP_002953305.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] gi|239796430|dbj|BAH75419.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio magneticus RS-1] Length = 364 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 129/251 (51%), Gaps = 2/251 (0%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 FP + A + + + +G + D P PASLTK+MT YVVF + KA Sbjct: 24 TAFPAKN-AGKLAVKSALVTEYGSGKTLYSQDADRPIPPASLTKVMTMYVVFDLVASGKA 82 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 I +S+ A S + G +TLD ++ + V S ND +A+AE F Sbjct: 83 SFADRIKVSRGADRTGGSTMGLRAGEIVTLDELMRGMAVASGNDACIAVAEHF-GGVPTF 141 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN ++ LG++ T F N +G+ G YTTARD+ L+ +PQ + Y + Sbjct: 142 VGLMNRKARELGMTGTTFKNPNGLPAAGQYTTARDLTKLAVSYLRHYPQALRYHSTTEIN 201 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 G + NTN + ++ GADG+KTG+ ASG+NI+A+A +GD +IAV+LG + RN+ Sbjct: 202 HNGAVHGNTNRLLASYDGADGIKTGYVDASGYNIIATAKRGDTRVIAVVLGGRTKQVRNR 261 Query: 255 VSASLLSMGFY 265 + +L F Sbjct: 262 EAVRILDASFS 272 >gi|229083326|ref|ZP_04215686.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] gi|228699973|gb|EEL52598.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-44] Length = 449 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 152/349 (43%), Gaps = 37/349 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + + ++F S A P L++ ++G ++ + D Sbjct: 17 KRFIAMVTVLTLFCSMFVTYSSASAETGPALDVAAGAAILVEADSGKILYQKNADELLAI 76 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 77 ASMTKMMSEYLVHKAVDQGKLKWDQKVKVSEYAYKVSQDRSLSNVPLENGGSYTVKELYE 136 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MN+ +K GL F+N+ G+ Sbjct: 137 AMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNTDLKGLHPE 196 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD+AIL+ R+ DFP + +I K KYP N NW + Sbjct: 197 GTTPDEENKMSARDVAILAQRLMQDFPNVLDTAKIPKKVFQKDGKYPIQMDNWNWMLKGL 256 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G+ +A + LI+V++ +R + + GF N Sbjct: 257 VKQYEGVDGLKTGHTPEAGYCFTGTAEKNGMRLISVVINTSSNTSRFDETKKIFDYGFAN 316 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +K Y + + + V N ++ T Q + K +KD Sbjct: 317 FDVKKV--YSKGSAVKGHETVRVENAKDKDVTVQTKQAITLPMPKGSKD 363 >gi|302389707|ref|YP_003825528.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] gi|302200335|gb|ADL07905.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter oceani DSM 16646] Length = 377 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 143/293 (48%), Gaps = 24/293 (8%) Query: 6 VIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++ + S F S A+ + Y L+D +G ++ E + AS TK+MT Sbjct: 10 MVFVILFTSGFFISGSEAKELNLSLNARAYVLMDPVSGRILVEKNSEIRLPMASTTKIMT 69 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A V K L + +T+S+ A+ S+ + G TM+L++ L L++ S ND AV Sbjct: 70 AIVALE-----KGDLNSTVTVSRKAASVRGSSFHLEPGETMSLESMLYGLLLPSGNDAAV 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE + K FV+ MN ++ +G THF N HG+ + GH+TTA+D+A+++ Sbjct: 125 AIAEHIGGDVKTFVELMNLKAREIGAFNTHFKNPHGLDEPGHFTTAKDLALITRYALNI- 183 Query: 182 PQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 P++ + K + I + + NTN + DG+KTG+T +G +VA+A + Sbjct: 184 PKFREIVRTKDIIITEGRRPRHIYNTNRLLRVSEEIDGVKTGYTGKAGRCLVATAERNGM 243 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 LI+V+L A D + LL+ GF K + + N+ VP Sbjct: 244 RLISVVLDAHDH---FSNTLKLLNYGFSTYRLNKLV-------QKNNIYAAVP 286 >gi|229103097|ref|ZP_04233784.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228680286|gb|EEL34476.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 453 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + L + + AET + L++ N+G ++ + D Sbjct: 23 KRFIAIVTVITLFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+NA G+ Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDLKGYHLE 202 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N NW + Sbjct: 203 GTNLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMVNFNWMLKGL 262 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +K Y + + + V N ++ Q + K KD Sbjct: 323 FEVKKV--YGKDAVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKD 369 >gi|296445856|ref|ZP_06887808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] gi|296256684|gb|EFH03759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus trichosporium OB3b] Length = 400 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 5/252 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 +P+ L+D T V+ E D PAS K+MTA +VF + E + L T+S++ Sbjct: 37 TSVPHAILVDAGTHTVLLEKAADDFVTPASTVKVMTAEIVFHEIAEGRLKLDDEFTVSEH 96 Query: 86 ASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S S +++ ++ L++ S ND A+ +AE + +E+ FV MN Sbjct: 97 AWRSGGAPAGGSAMFLPVNSRAKVEDLIRGLVIVSGNDAAITLAEGVAGSEEAFVGRMNK 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 + LGL+ + F N G T R+M L+ + +P + YF K + Sbjct: 157 RASELGLAKSIFGNPWGQAGPDQKVTPREMVQLAAHVIETYPDFYRYFGEKEFTWNKIRQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + LGADG+KTG +SGF +V SA+Q D+ LI + GA R + + LL Sbjct: 217 QNRNPLLTMSLGADGLKTGNIDSSGFGLVGSAVQDDRRLIVAVYGAKTAKERAEEARKLL 276 Query: 261 SMGFYNKTDRKK 272 GF N +++ Sbjct: 277 QWGFRNFEEKQL 288 >gi|228908234|ref|ZP_04072080.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228851432|gb|EEM96240.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 442 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N E+ Q + K KD KE + Sbjct: 312 FEVKNV--YGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDGYKKEFKVSNK 369 Query: 324 EKITLLKNKIT 334 E +K +T Sbjct: 370 EPEAPIKKGVT 380 >gi|121535743|ref|ZP_01667545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121305642|gb|EAX46582.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 378 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 21/343 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R+ L+ +A+L S +++ +TG V+ + PAS TK+M Sbjct: 2 LRRGLIPWLIALLVLPNTGWSAPLDLTAKSAIVIEASTGKVLYAKDAETKRYPASTTKMM 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T V L +T S NA+ S+ G + L + L +++ S ND Sbjct: 62 TLIVALEH-----GNLNDIVTTSANAASTEGSSLWLAPGEQLKLLDMLYGVMLVSGNDAT 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + + +KF + M + +G + T+F N+ G+ HYTTA D+A ++ Sbjct: 117 VAVAEHISGSVEKFARLMTEKAHAIGATNTNFTNSSGLPDPNHYTTAHDLAKIA-AYGYK 175 Query: 181 FPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P + K I + N N + + GA+G+KTG+T A+G +V+ A + Sbjct: 176 NPFFAEIVSTKHKVIPWPGKDHDRDLYNENKMLWLYDGANGVKTGYTEAAGPCLVSGAKR 235 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYIIKDFYQQNLSNE 288 + LIAV+L D + S +LL GF + + + +Q Sbjct: 236 NNIQLIAVVL---DSERMWEESMALLDYGFKQVKPMVLFNQGDIVKTVRVNNGKQETVRL 292 Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 V S V + + + T ++ E+ + +K+ ++K Sbjct: 293 VTKASSIVPVSADDKDQFRTVVEAPAKLEAPVVAGQKVGVVKT 335 >gi|169795133|ref|YP_001712926.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii AYE] gi|213158204|ref|YP_002320255.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii AB0057] gi|215482680|ref|YP_002324876.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB307-0294] gi|301345223|ref|ZP_07225964.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB056] gi|301511561|ref|ZP_07236798.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB058] gi|301596993|ref|ZP_07242001.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB059] gi|332853987|ref|ZP_08435103.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332869733|ref|ZP_08438921.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] gi|169148060|emb|CAM85923.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter baumannii AYE] gi|193077983|gb|ABO12897.2| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii ATCC 17978] gi|213057364|gb|ACJ42266.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein [Acinetobacter baumannii AB0057] gi|213986927|gb|ACJ57226.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB307-0294] gi|332728269|gb|EGJ59651.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013150] gi|332732635|gb|EGJ63868.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6013113] Length = 439 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|90420271|ref|ZP_01228179.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90335605|gb|EAS49355.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 455 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 165/276 (59%), Gaps = 3/276 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V+++ + PAS TKLMTAY+ L+E + L +P+ +++ ++ P Sbjct: 29 IVVDVATGKVLSQQHATERRYPASTTKLMTAYLALRALRESRLSLDSPVIVTRRSAAEAP 88 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S FK GS + LD AL++++VKSANDIA AI E++ + ++FV MN+ + LG+ T Sbjct: 89 SKMGFKPGSVIRLDFALRMMLVKSANDIAYAIGETVGGSMEEFVAMMNDAAAQLGMQDTR 148 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F+NA+G+ G +++A+D+AIL I+ +FP + YF + + N N +G F Sbjct: 149 FINANGLPGEGQHSSAKDLAILGVAIRREFPAFADYFGTEAISNGTAILKNGNKLLGRFD 208 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GADGMKTG+ CASGFN+V+SA + ++L+AV++GA R ++SA +L GF TD Sbjct: 209 GADGMKTGYICASGFNLVSSATRNGRTLVAVVIGANGTIPRERLSAEILEAGFA--TDPA 266 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307 ++ + + + E ++S+ +C+ + N Sbjct: 267 SVDIRVDELPVAS-DTEPLDVSDYICSAEGRTARAN 301 >gi|327190645|gb|EGE57733.1| putative D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 290 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 135/261 (51%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + + L + + A+ ++D +G V+ + D PASLTK+M Sbjct: 1 MTKMTSRLRATALWSALLISAFAQAEAGQASFVVDVRSGQVLEASNQDDLNYPASLTKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A Sbjct: 61 TLYLAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D Sbjct: 121 VAIAEQLGGSEQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G + R+ A LL Sbjct: 241 GVVMGEKTASIRDDKMAGLLD 261 >gi|308066921|ref|YP_003868526.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus polymyxa E681] gi|305856200|gb|ADM67988.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus polymyxa E681] Length = 462 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 32/308 (10%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T+ Sbjct: 65 PPNLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTV 124 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 ++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T+ Sbjct: 125 NENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETA 184 Query: 143 KNLGLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + +G+ T+F+N+ G+ TARD A L+ I D P Y + I Sbjct: 185 QRMGMKNTYFINSTGLDRSDMPKGFQPDTDRETVMTARDAATLASYIIKDHPDYTRFTTI 244 Query: 191 KGLEIK---GKKYPNTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + + N NW + + G DGMKTG T +G +A + Sbjct: 245 QSYKFRPTDKAPLININWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNG 304 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEVP 290 LI+V++GA R +A +L+ GF N ++ I + + EVP Sbjct: 305 MRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVIAPKTVVKGVENVPVTKGTETEVP 364 Query: 291 NISEEVCT 298 ++++ + Sbjct: 365 IVTKDAVS 372 >gi|163940275|ref|YP_001645159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163862472|gb|ABY43531.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 434 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + L + AET + L++ N+G ++ + D Sbjct: 4 KRFITIVTVLTLFCSMAVPFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 +++ SAN +A+AE + E FV+ MN+ SK + F+N+ G+ H Sbjct: 124 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFEMENYKFVNSTGLTNHDLKGHHPE 183 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N NW + Sbjct: 184 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 243 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 244 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 303 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 +K Y + + + V N ++ Q + K KD KE + Sbjct: 304 FEVKKV--YGKDSVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDVYKKEFKVSNK 361 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 362 EQEAPIKKDVT 372 >gi|134298966|ref|YP_001112462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051666|gb|ABO49637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 403 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 158/375 (42%), Gaps = 41/375 (10%) Query: 1 MRQFLVIIAMAMLSNIFPF-LSIAETNKLPY--------------------------YTL 33 M+ L II + IF SIA P L Sbjct: 1 MKGILKIIGTTSICLIFALSFSIAMAFAEPADQGQKAKPNGIGEKSSSAQLETTAETAVL 60 Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 LD ++G V+ + AS+TKLMT ++ +++ ++ + S++A S Sbjct: 61 LDYSSGQVLYDKDMHVARPMASVTKLMTMLLICEAESQERIKMSDKVVASEHACSMGGSQ 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G MT L + SAND +VA+AE + +++ FV MN +K +GL THF Sbjct: 121 IFLEPGEEMTAKEMLISIATGSANDASVAMAEFIAGSQEAFVSMMNEKAKKMGLKNTHFS 180 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAVGTFL 211 N G+ HYT+A DMA + +P + I +++G K NTN + + Sbjct: 181 NPTGLPIENHYTSAYDMAQVLRECLR-YPLFREVSSIYEYDLRGGDFKLWNTNKLLKWYA 239 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF--YNKTD 269 GAD KTG+T + + + ASA + L++V+LG T + + + + GF Y D Sbjct: 240 GADAGKTGWTNEASYCLAASAKRDSLRLVSVVLGCPMPRTHFQETIKIFNYGFARYKAVD 299 Query: 270 RKKINYIIKDF-YQQNLSNEVPNISEE---VCTTQKEIINYN-----TQMKEAKDKESHF 320 + ++K+ ++ + +V I+++ + + + + A K+ Sbjct: 300 MAEAGQVVKEIKVEKGMMEKVKVITKDPVGLVVPKGQEKTVKGTINLPEKVVAPIKKGQI 359 Query: 321 IDFEKITLLKNKITK 335 I ++ ++ K Sbjct: 360 IGQYVVSKDGKEVLK 374 >gi|182678644|ref|YP_001832790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634527|gb|ACB95301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica subsp. indica ATCC 9039] Length = 563 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 148/273 (54%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ET ++D N+GH + + +PAS+TK+MT Y++F L++ L + I +S Sbjct: 71 ETPASVAAIVVDANSGHTLYAHGEHELRHPASITKVMTLYLLFEQLEQGHLRLDSAIHVS 130 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +A+ P+ GS++++++A++ ++ +SAND+AVAIAE++ E+ F M + Sbjct: 131 PHAAAQKPTKLGLHAGSSISVEDAIRAVVTRSANDMAVAIAETVGGDEETFAGMMTRKAH 190 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203 LG+S THF NA G+ TTA D+AIL I+ FP+Y YF G++ N Sbjct: 191 MLGMSRTHFENASGLPNDAQVTTAHDLAILGRAIQDRFPRYYPYFSTHVFHYAGQEIRNH 250 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 N + G DG+KTG+T ASGFN++ S +G S++A +LG + R+++ A L+ Sbjct: 251 NHLLDQVEGMDGIKTGYTRASGFNLLTSVKRGGHSIVAAVLGGVSAGARDRIMARLIENQ 310 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 N + + + ++ L+ + E+ Sbjct: 311 IDNGATTRSVGLLTENTASDRLARSGEELPPEL 343 >gi|295402720|ref|ZP_06812662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|294975251|gb|EFG50887.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] Length = 450 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 37/364 (10%) Query: 7 IIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + + PF + + L+D NTG ++ + D AS+TK+MT Sbjct: 12 FLMIGLCFYFLPFHAAKAAGDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 Y++ +KEK+ T S + SN +K T+ + + + SAN Sbjct: 72 EYLLLEAVKEKRVKWDQQYTPSDYVYRLSQDRSLSNVPLRKDGKYTIRELYEAMAIYSAN 131 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163 VAIAE + +E+ FV+ MN + LGL F+N+ G+ + Sbjct: 132 AATVAIAEIVGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEEN 191 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGAD 214 +AR +A L++ + ++P+ + + K N NW + + G D Sbjct: 192 VMSARSVATLAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVD 251 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTD 269 G+KTG+T +G+ +A + I V++ A R + + LL GF N + Sbjct: 252 GLKTGYTEFAGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSM 311 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 +K + + + L T K + +E K + + D +K+T Sbjct: 312 KKLYSKGYELKGKSVLPVVKGKEKSVAIATDKPLSLVVKNGEEKKYRPVYVFDKKKLTAD 371 Query: 330 KNKI 333 Sbjct: 372 GELT 375 >gi|89074850|ref|ZP_01161304.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] gi|89049425|gb|EAR54987.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34] Length = 459 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + L+D NTG ++A N + PAS TKLM Y+V L + L + + Sbjct: 97 FPPNLNARAFILIDANTGRIVASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVL 156 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + + A S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T Sbjct: 157 VPEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNAT 216 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 + LG+ THF G+ H++TA D+ +L I D+PQY H+F K E + P Sbjct: 217 AVKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQP 276 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQSLIAVILGALDRNTRNKVSASL 259 N N + T+ A GMKTG T A+G+++V+SA L+AV+LG N S L Sbjct: 277 NFNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMKLVAVVLGTQSLNDVAAQSKGL 336 Query: 260 LSMGFY 265 + GF Sbjct: 337 FNYGFR 342 >gi|227821091|ref|YP_002825061.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] gi|227340090|gb|ACP24308.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii NGR234] Length = 417 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 137/254 (53%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + +A+ + + + A ++D +G V++ D PASLTK+MT Y+ F Sbjct: 4 LQIALAAIVAFVAATASAFAGSASFVIDARSGRVLSAENADELNYPASLTKMMTLYLTFE 63 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L + TP+ +SK A+ PP+ K GS +T++ A+ +I+ SAND A A+AE L Sbjct: 64 ALHRGEINWQTPVPMSKEAARKPPTKLGLKPGSAITVEEAVYGMIIHSANDAAAAMAEKL 123 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E F Q M ++ LG++ T F+NA G+ TTARDMA L + DFP+ Sbjct: 124 GGSEAAFAQMMTAKARRLGMTRTVFVNASGLPASQQVTTARDMAKLGMALLRDFPREYRL 183 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F + +G+ N + + G DG+KTG+T ASGFN+V++ G++ +I V+LG Sbjct: 184 FSAQSFNFRGRVVRGHNKLMYRYDGMDGIKTGYTNASGFNLVSAVRDGNRRVIGVVLGGR 243 Query: 248 DRNTRNKVSASLLS 261 +R+ A+LL Sbjct: 244 TAKSRDNKMAALLD 257 >gi|198284286|ref|YP_002220607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665720|ref|YP_002426947.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248807|gb|ACH84400.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517933|gb|ACK78519.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 388 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 142/307 (46%), Gaps = 3/307 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 YTL+D +TG +IA + PASLTKLMTAY+ + ++ I IS A + Sbjct: 46 SYTLMDYDTGQIIAAKSENLRRAPASLTKLMTAYLTYQAIQGGTLTAQENIPISNTAWKT 105 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ + +D L L++ S ND AVA+AE++ ++ FV MN+++ L L Sbjct: 106 GGSSMFVQPNVPANVDQLLHGLLIDSGNDAAVALAEAVGGSQSGFVTLMNDSALRLNLHN 165 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 TH+ N G+ + YTTA D+A LS FPQ + + K G + N + Sbjct: 166 THYSNVDGLPDNNLYTTALDVAKLSRAFIRQFPQVIQITKEKSYTYNGITQRSWNPVLFR 225 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG--FYNK 267 DG+KTG T ASG+ I A+AI+ + LIAV+LG +LL G F+ Sbjct: 226 DPTVDGLKTGLTDASGYCIDATAIRNGRRLIAVVLGGPSWAGSTNAVEALLDYGYRFFVN 285 Query: 268 TDRKKINYIIKDFYQQNLSNE-VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + + + +LS +P E+ +++ + + + +K Sbjct: 286 HPVYTAGEKVSEISRSDLSPMHIPVGVEQNVDITVPKGRFSSLQRVVEIAPHLQVPMKKG 345 Query: 327 TLLKNKI 333 T++ + Sbjct: 346 TVVGRLV 352 >gi|319899049|ref|YP_004159142.1| penicillin-binding protein [Bartonella clarridgeiae 73] gi|319403013|emb|CBI76568.1| penicillin-binding protein [Bartonella clarridgeiae 73] Length = 449 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 167/324 (51%), Gaps = 4/324 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ ++ + + ++S + + E + Y ++D NTG + + PASLTK+M Sbjct: 13 KKVVIPLIVLVISYSWALATPKEAHPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F +K ++ TPI IS A+ PP+ K G T+++++A K LI KSAND+A Sbjct: 73 TLYMIFEAMKNRRITPNTPIPISNYAATRPPTKMGIKAGQTISVESAAKALITKSANDVA 132 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AI E L +E+KF Q M ++ LG+ T F NA G+ +Y+TA+DMA L+ ++ Sbjct: 133 TAIGEYLGGSEQKFAQMMTVKARKLGMKNTRFANASGLPDTRNYSTAQDMATLALALRKH 192 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F++ +G+ + N + T G DG+KTG+T SG N+ S +S++ Sbjct: 193 FPEQYKLFKMTHFRFRGQTINSHNTLIKTIKGIDGIKTGYTQMSGSNLATSMRIDGRSIV 252 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNISEEVC 297 AV++G TR+ ASLL + K +++ + + + +P I + Sbjct: 253 AVVMGGKSSTTRDIHMASLLKQYLPKASRTKTDEHLVATTHYKLPTGSATPIPIIKNNLI 312 Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321 + EI T + E + + I Sbjct: 313 NSDDEISTLLTALAEQPNNSNTAI 336 >gi|260556621|ref|ZP_05828839.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606] gi|260409880|gb|EEX03180.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606] Length = 439 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FV+ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVKRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|184159011|ref|YP_001847350.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|332874790|ref|ZP_08442660.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] gi|183210605|gb|ACC58003.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU] gi|322508991|gb|ADX04445.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii 1656-2] gi|323518975|gb|ADX93356.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii TCDC-AB0715] gi|332737051|gb|EGJ68008.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii 6014059] Length = 439 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N +E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIASESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|229586661|ref|YP_002845162.1| Penicillin-binding protein dacF precursor [Rickettsia africae ESF-5] gi|228021711|gb|ACP53419.1| Penicillin-binding protein dacF precursor [Rickettsia africae ESF-5] Length = 306 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 138/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ Sbjct: 123 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAASRDQKMMGLLDQHFN 272 >gi|222085114|ref|YP_002543644.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221722562|gb|ACM25718.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 429 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 92/261 (35%), Positives = 148/261 (56%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++FL+ ++ A++ P S A + Y ++D TG V+A + D +PASLTK+M Sbjct: 1 MKKFLMALSAAVVLLGAPVASFAGS----AYFIMDAKTGAVLASSNADDLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F + K + I +S NA+ PP+ K G T+T+ A+ +I+KSAND A Sbjct: 57 TLYMTFEAINRGKLSWNSKIPVSSNAAGKPPTKLGLKPGGTVTVREAVDGMIIKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE+L +E F + M ++ +G+ T FMNA G+ TTARDM+ L+ + + Sbjct: 117 AAMAEALGGSESGFARLMTQKAREIGMRRTVFMNASGLPNMQQVTTARDMSTLAVALINN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +PQ F G +G++ N + + G DG+KTG+T ASGFN+V++ G++ +I Sbjct: 177 YPQEYRLFSQTGFTYRGQRVRGHNNLMYRYEGMDGIKTGYTNASGFNLVSAVRHGNRRVI 236 Query: 241 AVILGALDRNTRNKVSASLLS 261 V++G R+ + ASLL Sbjct: 237 GVVMGGATARGRDALMASLLD 257 >gi|218897430|ref|YP_002445841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] gi|218545638|gb|ACK98032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842] Length = 437 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 127 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 186 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N E+ Q + K KD KE + Sbjct: 307 FEVKNV--YGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSNK 364 Query: 324 EKITLLKNKIT 334 E +K +T Sbjct: 365 EPEAPIKKGVT 375 >gi|295100396|emb|CBK97941.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii L2-6] Length = 418 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 2/237 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L++ +G V+ E D AS+TK+MT + F + + + + TP+ +S++A Sbjct: 70 AAILIEQGSGRVLYEKNADERVPIASITKVMTLLLAFEAVHDGRLTMETPVPVSEHAYHM 129 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S + G TLD +K + V SAND AVA+AE + +E FV+ MN + +LG+ Sbjct: 130 GGSQIWLEPGEHFTLDEMIKAICVSSANDAAVAVAELVGGSEPAFVEQMNARAASLGMEQ 189 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTNWAV 207 T F NA G+ GH +TARD+A +S I P+ +HY I ++G + NTN + Sbjct: 190 TSFRNACGLDAEGHLSTARDVAAMSRTILNTCPEVLHYTGIWTDTLRGGATQLINTNKLL 249 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + G G+KTG T +G I ASA + SLIAVILGA R + +LL GF Sbjct: 250 RRYEGITGLKTGTTGGAGICISASATRNGLSLIAVILGAPSSADRFNAATTLLDYGF 306 >gi|312113134|ref|YP_004010730.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] gi|311218263|gb|ADP69631.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] Length = 584 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 157/293 (53%), Gaps = 9/293 (3%) Query: 7 IIAMAMLSNIFPF-----LSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + A+ +L+ P S A++ + ++D +TG ++ P PAS+TK+M Sbjct: 1 MAALFLLAVSSPAEARRRASHAQSYSTASSAMVVDFHTGRILISRNATDPRFPASVTKVM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F L++ K + T + +S A+ P+ G T+T+ + + ++ KSAND+A Sbjct: 61 TLYLLFDALRDGKLNMNTKLRVSAYAASQSPTKLGLDAGDTITVSDVIGAIVTKSANDMA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 V +AE+L +E++F + M ++ +G+ T F NA G+ TTA+D+ IL+ + TD Sbjct: 121 VVVAEALAGSEEEFARRMTQKARTIGMLNTTFRNASGLPNSEQRTTAQDLVILARSVITD 180 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+ F K + G+ Y N N + ++ G +GMKTGFT ASGFN++A+A +G++ LI Sbjct: 181 HPERSRVFSTKYFQYDGEIYRNHNTMLFSYEGMEGMKTGFTSASGFNLLATARRGEKRLI 240 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK---TDRKKINYIIKDFYQQNLSNEVP 290 AV+LG RN ++L + T KK ++ F + + P Sbjct: 241 AVVLGGSSARVRNAAMRNILDASWSKAMTLTAAKKAGALVSSFAPKQFAQAAP 293 >gi|326204096|ref|ZP_08193957.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] gi|325985863|gb|EGD46698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens DSM 2782] Length = 401 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 17/316 (5%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 ++D +G V+ E + AS TK+MTA V K+ + +SK A Sbjct: 56 SAGAAIVMDAKSGRVLYEKNGYKRNSIASTTKIMTAIVAIENGKD-----DEDVIVSKRA 110 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K+G L N L ++++S ND A+AIAE + + + F + MN + +G Sbjct: 111 ASIGGSRVNLKEGKIYKLGNLLNAMMLRSGNDAAIAIAEHIGGSVEAFAEMMNRKAAQIG 170 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + T+F+ HG+ HY+T D+A+++ ++ K +G NTN Sbjct: 171 ATNTNFVTPHGLDDPQHYSTPFDLAMITQYALK-NEKFCKIVSTKSSSFEGNPINNTNEM 229 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + + GADG+KTG+T +G +V SA +I+V+L R+ R + S LL F N Sbjct: 230 LSLYPGADGVKTGYTGQAGRCLVTSATHNGWKVISVVLNCSTRSVRAQNSKILLDYAFGN 289 Query: 267 KTD---RKKINYIIKDFYQQNLSNEV-----PNISEEVCTTQKEIINYN---TQMKEAKD 315 + K+ I + + L+N V ++S + + + I + EA Sbjct: 290 YSTYDYLKQGQQISEIGIHKGLNNSVGLCSDKDVSIPLKKDEADRIKAEYDIPKTLEAPI 349 Query: 316 KESHFIDFEKITLLKN 331 ++ I K L Sbjct: 350 QKGSRIGTVKYVLDGK 365 >gi|165933122|ref|YP_001649911.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia rickettsii str. Iowa] gi|165908209|gb|ABY72505.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia rickettsii str. Iowa] Length = 306 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYILVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S A++ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARD+A L+ Sbjct: 123 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAESRDQKMMGLLDQHFN 272 >gi|167922874|ref|ZP_02509965.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei BCC215] Length = 315 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 9/269 (3%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 + A +S + A + + ++D ++G + + D PASLTKLMTAYV F Sbjct: 28 LFAALFVSAACAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAF 87 Query: 67 SFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 L+ +T++ + + G + + + ++ LIV SAND A+ + Sbjct: 88 DALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVL 147 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+ R+ DFP Sbjct: 148 AKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPA 207 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GD----Q 237 + + + N N +G DGMKTG T A+G+ +V +A + G Sbjct: 208 FYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARH 267 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266 +IAV+LG R + +LL GF + Sbjct: 268 RVIAVLLGEPTEKQRLADARALLDQGFAS 296 >gi|261410081|ref|YP_003246322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261286544|gb|ACX68515.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 323 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 28/293 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 +++L ++ M ++ + I L+D NTG ++ D P P Sbjct: 3 KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDVPLPP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMT V+ +K K + IS AS+ K G +T+ + + V Sbjct: 63 ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGV---VQHGH------ 163 SAND +VA+AE +E+ FV+ MN +K +GLS+ T F+NA GV +GH Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182 Query: 164 --YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV------GTFLGA 213 TA D A L+ + P + +I G+ NTNW + ++ G Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+K G+T +G+ +A + LIAV++G + R + + L GF Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295 >gi|34580546|ref|ZP_00142026.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246] gi|28261931|gb|EAA25435.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246] Length = 306 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 138/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ Sbjct: 123 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAASRDQKMMGLLDQHFN 272 >gi|190890661|ref|YP_001977203.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190695940|gb|ACE90025.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 432 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR+ L + L+ P ++A + L +LD TG V+A D +PASLTK+M Sbjct: 1 MRKLLAAVLTVTLAVSAPLAALAGSASL----ILDARTGKVLAAENADTLNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A Sbjct: 57 TLYLTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE+L +E F + M ++ LG+S T F+NA G+ TTARDM+ L + + Sbjct: 117 AAMAETLGGSESGFARMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKN 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P F + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++ Sbjct: 177 YPNEYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236 Query: 241 AVILGALDRNTRNKVSASLLS 261 V+LG +R+ A LL Sbjct: 237 GVVLGGRTARSRDAKMAGLLD 257 >gi|239625716|ref|ZP_04668747.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519946|gb|EEQ59812.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 392 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 11/256 (4%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 A P L++ +TG VI E D +PAS+TK+MT ++F L+ K LT + Sbjct: 28 AAVQIAAPSAVLMEASTGQVIYEKGADEKRSPASVTKVMTLILIFDALQSGKINLTDEVV 87 Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 S +A S ++G T++ +K +++ S ND +VA+AE + TE++FV+ MN Sbjct: 88 TSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIGGTEEEFVRMMNER 147 Query: 142 SKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 + LG++ THF++ G+ + H TTARD+AI+S + +PQ +Y I I Sbjct: 148 AAGLGMTNTHFVDCCGLTESPEHLTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTK 207 Query: 200 -------YPNTNWAVGTFLG--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 NTN + G+KTG T + + + A+A + LIA I+ A D Sbjct: 208 QGTKEFGLSNTNKLLKMATNFKVTGLKTGSTSIAKYCLSATAEKDGVRLIATIMAAPDFK 267 Query: 251 TRNKVSASLLSMGFYN 266 R + +LL+ G+ N Sbjct: 268 ARFGDAQTLLNYGYAN 283 >gi|13470857|ref|NP_102426.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14021600|dbj|BAB48212.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 485 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 140/275 (50%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++ A+ + P ++D TG V+ + PASLTK+MT Y Sbjct: 16 LKAMMVFALAMTFVCADVASSLAARPAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + F + + K TP+ S AS P+ K G +++++ A+ ++ KSAND A A+ Sbjct: 76 LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVSVETAILSIVTKSANDSATAL 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E L E F + M ++ LG++ T F NA+G+ G +TTARDMA L ++ FPQ Sbjct: 136 GEMLGGDETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y YF + ++ N +G G DG+KTG+T ASGFN+V+S G++ L+AV+ Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVV 255 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +G +R+ ASL++ + R + + K Sbjct: 256 MGGTSGGSRDNQMASLINTYMPRASTRGGGDLVAK 290 >gi|157828411|ref|YP_001494653.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800892|gb|ABV76145.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 306 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 138/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYIFVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S A++ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARD+A L+ Sbjct: 123 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAESRDQKMMGLLDQHFN 272 >gi|118590830|ref|ZP_01548230.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia aggregata IAM 12614] gi|118436352|gb|EAV42993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia aggregata IAM 12614] Length = 295 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 93/256 (36%), Positives = 148/256 (57%), Gaps = 3/256 (1%) Query: 9 AMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A A+ + P ++ A + +L+ +TG + D P PASL+K+MT Y++ Sbjct: 37 APAVEAAPLPAVAYAPETAVERGFSALVLNASTGEELYAVDADAPRYPASLSKMMTLYLL 96 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F + E + L+TP+++S A+ PP+ K GST+T++ A + L VKSAND+A+ +AE Sbjct: 97 FEAVSEGRYSLSTPLSVSAKAASEPPAKIGLKAGSTITVEEAARALAVKSANDVAIVVAE 156 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F + M + ++ LGLS T F+NA G+ ++ARDMA+L +K FPQY Sbjct: 157 NLAGSEAAFARQMTSQARALGLSRTRFVNATGLPDPAQVSSARDMAVLGLTLKRRFPQYA 216 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 Y++ K G+ + TN VG G DG+KTG+ SG+N+VA+A +G + LI V++G Sbjct: 217 SYYRAKSFSYNGRTFRATNNLVGKVAGVDGLKTGYIRMSGYNLVATANRGGKRLIVVVMG 276 Query: 246 ALDRNTRNKVSASLLS 261 R+K L+ Sbjct: 277 GASEAARDKEVTRLIE 292 >gi|329925045|ref|ZP_08279989.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328940164|gb|EGG36496.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 323 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 28/293 (9%) Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 +++L ++ M ++ + I L+D NTG ++ D P P Sbjct: 3 KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDLPLPP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMT V+ +K K + IS AS+ K G +T+ + + V Sbjct: 63 ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGV---VQHGH------ 163 SAND +VA+AE +E+ FV+ MN +K +GLS+ T F+NA GV +GH Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182 Query: 164 --YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAV------GTFLGA 213 TA D A L+ + P + +I G+ NTNW + ++ G Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 DG+K G+T +G+ +A + LIAV++G + R + + L GF Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295 >gi|163760149|ref|ZP_02167232.1| penicillin binding protein [Hoeflea phototrophica DFL-43] gi|162282548|gb|EDQ32836.1| penicillin binding protein [Hoeflea phototrophica DFL-43] Length = 394 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 7/277 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R F + + + ET Y L D +TG V+ + PASL KLMT Sbjct: 17 RLFFAFLVLFAGFTGAVRAQLFETRAEQAYML-DADTGTVLFSKNENDLVPPASLAKLMT 75 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSA 116 VVF+ ++ + L +S+NA S + S++ L++ ++ +IV+SA Sbjct: 76 MEVVFNAIRSGRLTLDDTFQVSENAWRTGGAISRTSTMFAELNSSIRLEDLIQGVIVQSA 135 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND + IAE + +E F + M+ ++++GL+ + F N+ G+ + +D+ L+ Sbjct: 136 NDGCIIIAEGMAGSEDNFSRLMSERARDIGLTQSVFANSSGLPHPHSKVSMKDLVTLARH 195 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 I +P++ Y+ + N N + +G DG+KTGFT SG+ IVAS + Sbjct: 196 IHATYPEFYRYYSQPEFTWNNIRQRNRNPLLNLDIGVDGLKTGFTEESGYGIVASIRRDG 255 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + L + G R + + +L G +RK + Sbjct: 256 RRLFVAMSGLSSERERAEEARKMLEWG-VRAFERKTL 291 >gi|241204780|ref|YP_002975876.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858670|gb|ACS56337.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 517 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 146/291 (50%), Gaps = 3/291 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + L I+++A+ + ++ AE Y ++D TG+V+ D PASLTK+M Sbjct: 19 RLLAILSVAVTIVMVDSVNTDAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 78 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 79 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 138 Query: 121 VAIA-ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 139 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 198 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+ Sbjct: 199 HFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 258 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 + V+LG R+ +L++ + R + +I E P Sbjct: 259 VGVVLGGASTPARDAQMRNLIASYLPKASSRGGSSALIAQATPAPAMIETP 309 >gi|163746820|ref|ZP_02154177.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45] gi|161379934|gb|EDQ04346.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45] Length = 396 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 142/275 (51%), Gaps = 11/275 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L A+A++ + P + A + +LD TG V+ D P PAS++KLMT Y+ Sbjct: 4 LFAAAVALVLTLQP--AAAFDTRATAAYVLDQTTGTVLLAKNADEPLPPASMSKLMTLYM 61 Query: 65 VFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 F ++ K L + +S++A Y S +++++ ++ +IV S ND + Sbjct: 62 AFEAVERGKQNGGLDLVEELPVSEHAMSYGGSTMFLDTTDRVSVEDLIRGVIVLSGNDAS 121 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F + M ++ +G++ + F N++G Q GH + RD+ +L+ RI Sbjct: 122 AVIAEALSPDGTEYGFARLMTQRAQQMGMTNSTFANSNGWPQAGHLMSVRDLGLLANRII 181 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +D+PQ+ F + G+ N N +G +GADG+KTG T +G+ +V SA QG Sbjct: 182 SDYPQFYPLFAEREFAFDGRAPQNKLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQG 241 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 D+ +I V+ G R + + S+++ F T R Sbjct: 242 DRRVIFVLSGLDSAAARAQEAESVVNWAFRQFTQR 276 >gi|157964469|ref|YP_001499293.1| penicillin-binding protein dacF precursor [Rickettsia massiliae MTU5] gi|157844245|gb|ABV84746.1| Penicillin-binding protein dacF precursor [Rickettsia massiliae MTU5] Length = 313 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 138/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 10 RKFLLPYIFVVTFFFAPISEATKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 69 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KS Sbjct: 70 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKS 129 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ Sbjct: 130 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAM 189 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 190 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 249 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 250 GKSLIAVVTGGKSAASRDQKMMGLLDQHFN 279 >gi|228901076|ref|ZP_04065285.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228858592|gb|EEN03043.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 442 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ ++ +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N E+ Q + K KD KE + Sbjct: 312 FEVKNV--YGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSNK 369 Query: 324 EKITLLKNKIT 334 E +K +T Sbjct: 370 EPEAPIKKGVT 380 >gi|114705410|ref|ZP_01438318.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114540195|gb|EAU43315.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 467 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 160/287 (55%), Gaps = 3/287 (1%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D TG V++++ PAS TKLMTAY+ ++ TP+ +++ A+ P Sbjct: 68 IVVDLETGKVLSQSNATERRYPASTTKLMTAYLAMKAVEVGSMDWDTPVVMTRQAANEAP 127 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSAT 150 S GS M LD A++ L+VKSAND+A A+ ++L + + FV MN T+ +G+ T Sbjct: 128 SKLDIPPGSIMRLDEAVRALLVKSANDVATAVGQTLGHGSSETFVAMMNRTAGLIGMRDT 187 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 F+NAHG+ G +++A+D+AIL+ I+ +FP+Y +F + + GK N N +G + Sbjct: 188 QFINAHGLPGEGQHSSAKDLAILAMAIREEFPEYKDWFGTEAIVFNGKLMNNGNKLLGRY 247 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GA+GMKTG+ CA GFN+V++ + +++LIAV+LGA R +SA L F K D Sbjct: 248 DGAEGMKTGYICAGGFNLVSAVTRDNRTLIAVVLGANGTIERETLSAELYETAF--KADL 305 Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 +K+ ++S +C+ + N ++ + +DK Sbjct: 306 DANYKTVKELPIVGDGKVTLDVSNYICSGEGRTARANDRVADRRDKS 352 >gi|114707363|ref|ZP_01440260.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114537244|gb|EAU40371.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 299 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 125/232 (53%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 ++D TG + E+ D PASLTK+MT Y++F ++ + T +S+NA+ Sbjct: 61 SALVVDFGTGRTLYEDQADELRYPASLTKMMTLYLLFEAVENGQLSRETQFIVSENAASK 120 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PPS K G ++ + A+ L VKSAND+A +AE++ TE+ F M +++LG++ Sbjct: 121 PPSKLGLKPGESIPVSLAMTALAVKSANDVATVVAENMAGTEEAFAAVMTRKARSLGMNH 180 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F NA G+ ++ARDMAIL I + +P Y F + G+ Y +TN +G Sbjct: 181 TQFANASGLPNPQQVSSARDMAILGRAIMSRYPSYAQLFATPSYQYNGRTYNSTNKLLGK 240 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DGMKTG+ +G ++VA+ + + LI V+LG R+ L+ Sbjct: 241 VAGVDGMKTGYINDAGSHLVATVRRNGRRLIVVVLGGDSSRKRDAEVTELIE 292 >gi|89100964|ref|ZP_01173810.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL B-14911] gi|89084335|gb|EAR63490.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL B-14911] Length = 433 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 141/359 (39%), Gaps = 37/359 (10%) Query: 12 MLSNIFPFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 M+ +FP L+ A + +++ TG V+ D AS+TK+MT Y++ Sbjct: 2 MVIGLFPGLNKASADDALNINADAAIVVEAETGKVLYSKNADKVLGIASMTKIMTEYLLL 61 Query: 67 SFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 +KE K +S+ + SN ++ + + + + SAN +A Sbjct: 62 EAIKEGKVKWDQEYAVSEYVWKVSQDRALSNVPLRRDGKYNIKELYEAMSIYSANGATIA 121 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTARD 169 IAE++ +E FV+ MN+ ++ LGL F+N+ G+ + + +AR Sbjct: 122 IAETIAGSESNFVKMMNDKAEELGLKDYKFVNSSGLNNRDLKGSHQVGGAEDENVMSARA 181 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVGT----FLGADGMKTGF 220 A L+ R+ D+P+ + I + K N NW + + + G DG+KTG Sbjct: 182 TAKLAQRLLHDYPEILETTSIPTKNFREGTDDEIKMDNWNWMLPSLVFGYEGVDGLKTGT 241 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKIN 274 T +G+ +A + I V++ A +R + +L F N + + I Sbjct: 242 TDFAGYCFTGTATRDGNRYITVVMNAKGEGNSGSYKSRFDETRKMLDYAFSNFSKEEIIA 301 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 + Q+ L + I ++ K +D +K+ N Sbjct: 302 KNYQVKGQKTLPVTKGKEDSVKIQAKDAIELVVKNGEKESYKPELVLDKDKLDKDGNLT 360 >gi|254501213|ref|ZP_05113364.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222437284|gb|EEE43963.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 473 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 98/273 (35%), Positives = 155/273 (56%), Gaps = 4/273 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R L I+A A+ + + AE Y L+D G V+ + W PASLTK+MT Sbjct: 9 RSALPILAAALGFFLMAAPARAEIGT---YILVDARNGAVVDQKNATRKWYPASLTKMMT 65 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 AYV F ++E + L + + SKN++ PPS FK G+ T+D ALK++++KSAND++V Sbjct: 66 AYVTFKAIREGRVALDSAVVQSKNSAAEPPSKMGFKVGTKFTIDTALKIILIKSANDVSV 125 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+ E++ +E F+ MN ++ LG++ T F N HG+ + TTARDMAIL+ ++ DF Sbjct: 126 ALGEAVSGSENAFLAEMNAEARRLGMTNTRFTNPHGLPDNRQVTTARDMAILAMALRKDF 185 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+ +++ G+ K + N + GA+GMKTG+ C SGFN+ +S + ++LI Sbjct: 186 PEAREFYKHPGIRFGKKTLRSANREFLLRVPGANGMKTGYICNSGFNVASSVTRRGRTLI 245 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 A+I+GA R + L GF + + + Sbjct: 246 AIIMGASSGLERTAFARQLFDEGFRKGSRGQNV 278 >gi|209549453|ref|YP_002281370.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535209|gb|ACI55144.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 517 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 86/291 (29%), Positives = 146/291 (50%), Gaps = 3/291 (1%) Query: 3 QFLVIIAMAMLSNIFPFLSI-AETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + + I+++A+ + +S AE Y ++D TG+V+ D PASLTK+M Sbjct: 19 KLMAILSVALTVVLVDSVSAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 78 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A Sbjct: 79 TIYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 138 Query: 121 VAIA-ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ +E +F Q M + LG++ T + NA+G+ TTARD A L ++ Sbjct: 139 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 198 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+ Sbjct: 199 HFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 258 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 + V+LG R+ +L++ + R + +I + P Sbjct: 259 VGVVLGGASTPARDAQMRNLIATYLPKASSRGGSSALIAEAAPAPAMIVTP 309 >gi|240850298|ref|YP_002971691.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240267421|gb|ACS51009.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 449 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 99/314 (31%), Positives = 156/314 (49%), Gaps = 6/314 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + I+ +L+ + + S P ++D TG + + PASLTK+MT Sbjct: 15 IAISFVVLAFSYCWASATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASLTKMMTL 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ ++ TPI +S A+ PP+ FK G T++ ++A K LI +SAND+A A Sbjct: 75 YLLFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAESAAKALITRSANDVAAA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE L +EKKF Q M ++ LG+ THF NA G+ +Y+TARD+A LS ++ FP Sbjct: 135 IAEYLGGSEKKFAQMMTIKARKLGMKHTHFANASGLPDVHNYSTARDIATLSLALRKHFP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + F+ K +G K + N V G DG+KTG+T SG N+ S +S++AV Sbjct: 195 KQYKLFKTKSFNFRGHKINSHNKLVKIMKGVDGIKTGYTQMSGSNLATSMRLDGRSVVAV 254 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---VPNISEEVCTT 299 ++G R++ ASLL+ + K ++ + +P I + Sbjct: 255 VMGGKSSTARDEHMASLLNQYLPKASQMKSGERLMASVRYHLPTGANTPIPTIKADSSNF 314 Query: 300 QKEIINYNTQMKEA 313 EI T E Sbjct: 315 DDEISTMLTAFAEQ 328 >gi|49474302|ref|YP_032344.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49239806|emb|CAF26196.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 450 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 154/313 (49%), Gaps = 6/313 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+V+ ++ P + ++D NTG + + PASLTK+MT Y Sbjct: 19 FIVLALSCFCASATPQEVYPDKY---AAIVIDANTGKTLFQANATLKRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F + ++ TPI +S+NA+ PP+ K G T++ A K LI +SAND+A A+ Sbjct: 76 MLFQAMHMRRVTPNTPIPVSRNAAARPPTKLGLKAGQTISAQEAAKALITRSANDVATAV 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE L EKKF + M ++ LG++ THF NA G+ +Y+TARDMA LS ++ FPQ Sbjct: 136 AEYLGGNEKKFARMMTAKARKLGMTNTHFANASGLPDLRNYSTARDMATLSLALRKHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 F+ K +G + N V T G DG+KTG+T SG N+ S +SL+AV+ Sbjct: 196 QYKLFKTKSFVFRGHTVKSHNKLVKTMKGVDGIKTGYTQMSGSNLATSMHIEGRSLVAVV 255 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---VPNISEEVCTTQ 300 +G R++ A+LLS K ++ + + +P + + + Sbjct: 256 MGGKSSTARDRHMANLLSQYLPKANSMKNDGRLMASAHYNLPTGANIPIPTVKADPTDSD 315 Query: 301 KEIINYNTQMKEA 313 EI T E Sbjct: 316 DEISTILTAFAEQ 328 >gi|154497956|ref|ZP_02036334.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC 29799] gi|150272946|gb|EDN00103.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC 29799] Length = 392 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 83/273 (30%), Positives = 126/273 (46%), Gaps = 12/273 (4%) Query: 1 MRQFLVIIAMAMLSNI-FPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ + A+L P + A L+D +G V+ E D AS+ Sbjct: 1 MKRVFAAMTAAVLCLTWLPLSAGAAGEPGVSASCAILVDAESGRVLMEKNADEERAIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TKLMTA V + L +TI K + S+ ++G +TL L L++ S Sbjct: 61 TKLMTALVAVESTSD----LDRTVTIQKEWTLAEGSSMYLREGEELTLRELLYGLLLVSG 116 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+AIA FV+ MN ++ LG+ THF+N +G+ GHY+TA DMA L+ Sbjct: 117 NDAALAIAGFCAGDTDTFVEWMNLRAQELGMEHTHFVNPNGLPAEGHYSTAADMAKLAI- 175 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + P K + + G+ N N + + G GMKTG+T A+G +V+ A + Sbjct: 176 VVMEQPDLAEIVGTKSVTMAGRTMTNHNKLLWRYEGCVGMKTGYTDAAGRTLVSCAERDG 235 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 Q LIAV L A + A++ GF Sbjct: 236 QRLIAVTLNAPND---WADHAAMFDYGFSQWPS 265 >gi|75763243|ref|ZP_00743000.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489272|gb|EAO52731.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 448 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 157/372 (42%), Gaps = 41/372 (11%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 17 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 76 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 77 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 136 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 137 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 196 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGT- 209 + +ARD AIL+ R+ DFP+ ++ +I +G KYP N NW + Sbjct: 197 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKXF 256 Query: 210 ----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG T +G + + LI+V++ A R + L GF Sbjct: 257 XLXQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFA 316 Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFID 322 N + Y + + + V N E+ Q + K KD KE + Sbjct: 317 NFEVKNV--YGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSN 374 Query: 323 FEKITLLKNKIT 334 E +K +T Sbjct: 375 KEPEAPIKKGVT 386 >gi|254564164|ref|YP_003071259.1| D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] gi|254271442|emb|CAX27457.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens DM4] Length = 494 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 21/318 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTGHVIAENYPDHP 50 +A+ +L+ F +++A+ + ++D +G + D Sbjct: 14 AVAVLLLATSF-LVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K Sbjct: 73 RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+ KSAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAYDL 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASL----LSMGFYNKTDRKKINYIIKDFYQQNLS 286 +A GD+ ++A++LG +R+++ A L L F + + + ++ Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVA 312 Query: 287 NEVPNISEEVCTTQKEII 304 + + E I Sbjct: 313 EADSRTRTVIASADDEDI 330 >gi|239831909|ref|ZP_04680238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824176|gb|EEQ95744.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 426 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 134/257 (52%), Gaps = 4/257 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +I + A+ + + + + + + D ++G ++ ++ + PASL K+MT Y+ Sbjct: 33 LIASFALGAGVLCTSASMAST---SWVVFDADSGRILGQDDANIQHAPASLAKMMTLYLA 89 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F LK + + ISKNA+ K G T+T+ +A+ +IV SAND A + E Sbjct: 90 FEALKTGRLHWDDAMPISKNAASKVRMKLWLKPGETITVHDAIYGMIVISANDAATVMGE 149 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQY 184 + +E F + M ++ +G+ +T F+N G+ TTARDMAIL ++ DFP+ Sbjct: 150 YMAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKATQLTTARDMAILGMSLRRDFPEQ 209 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F + + + N + + G DG+KTG+T SG+N+V+SAI D+ L+ V+L Sbjct: 210 YALFSTRSFTFRNRVLNGHNTLMYRYQGVDGIKTGYTDVSGYNLVSSAIINDKHLVGVVL 269 Query: 245 GALDRNTRNKVSASLLS 261 GA R+ A LL+ Sbjct: 270 GAGSARQRDDQMAKLLT 286 >gi|300854313|ref|YP_003779297.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434428|gb|ADK14195.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] Length = 435 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ +G VI E PAS+TK+MT + + + L+ +T+S+NA Sbjct: 84 ARSALLMEPASGKVIFEKSSHEKLEPASVTKIMTMLLTMEAVDSGRISLSDKVTVSENAK 143 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + S+ G ++++ +K + + S ND AVA+AE L +E +FVQ MN + LG+ Sbjct: 144 KMGGSSMLLDTGEVRSVEDLIKGIGIASGNDAAVAMAEYLGGSEDQFVQLMNKRAAELGM 203 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----N 202 T F N G+ + GH TTA D+A++S + + + Y I +G+K P N Sbjct: 204 KDTSFKNCTGLSEDGHLTTAYDIALMSRELLK-HTRILKYTGTYMETISEGRKSPIELVN 262 Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N V F G DG+KTGFT ++ + I A+A + ++AVI+G+ RNK ++ +++ Sbjct: 263 HNKLVRFFKGCDGLKTGFTSSAKYCISATATRDGARMLAVIMGSPTYKVRNKDASMMMNY 322 Query: 263 GFYNKTDR 270 GF + Sbjct: 323 GFSKYFGK 330 >gi|262168638|ref|ZP_06036333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] gi|262022756|gb|EEY41462.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27] Length = 339 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKG 99 AE D +PASLTK+MT+YV+ +K L + ISKNA S + G Sbjct: 2 AEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVG 61 Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 +T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Sbjct: 62 TTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLD 121 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKT 218 Y+T D+A+L + D P+ + + G N N + + DG+KT Sbjct: 122 DPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKT 181 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G T +G+N+V+SA +G+ L+AV++G + N R S LLS GF Sbjct: 182 GHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFET 232 >gi|126739769|ref|ZP_01755460.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6] gi|126719001|gb|EBA15712.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6] Length = 388 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 5/275 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR V A + A ++D T V+ D P PAS++KLM Sbjct: 1 MRPVFVTSAFVASLGLSALPLAAFETGARAAYVIDQGTDTVLLSKNADQPLPPASMSKLM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L++ + L+ + +S +A Y S + +++ L+ +IV S ND Sbjct: 61 TLYIAFEALQDGRLTLSEKLPVSAHAMSYGGSTMFLDTTDRVGVEDLLRGIIVLSGNDAC 120 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE+L TE F ++M ++ LG+ F N++G GH + RD+ IL+ R+ Sbjct: 121 AVIAEALSPDGTEAGFARYMTRRAQELGMVNATFANSNGWPAAGHRMSMRDLGILAERLI 180 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 DFPQY F K G+ NT N +G +GADG+KTG T +G+ +V SA+QG Sbjct: 181 EDFPQYYPLFSEKEFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQG 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 ++ +I VI G R + + ++++ F + Sbjct: 241 ERRVIFVITGLNSAKARAEEAEAVVNWSFRQFAKK 275 >gi|218461037|ref|ZP_03501128.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli Kim 5] Length = 294 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 134/254 (52%), Gaps = 4/254 (1%) Query: 12 MLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +L++ PF + +LD +G V+ + D PASLTK+MT Y+ F Sbjct: 13 LLASALPFALLVGAFIPAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLYLAFE 72 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 L + + +T+S+NA P G +TL A++ ++V SAND AVAIAE L Sbjct: 73 ALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAIAEQL 132 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 +E+ F + M + ++ LG+ T F N G+ TTARDMA L + DFP+ Sbjct: 133 GGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKL 192 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++ V++G Sbjct: 193 FSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEK 252 Query: 248 DRNTRNKVSASLLS 261 R+ A LL Sbjct: 253 TAGLRDDKMAGLLD 266 >gi|209885251|ref|YP_002289108.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5] gi|209873447|gb|ACI93243.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5] Length = 425 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 5/251 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P L++ TG V+ E D P+S+ KLMTA V+F L + + LT IS+ Sbjct: 62 DTDAPTAILIEAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISE 121 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 NA S S +++D+ L L ++S ND +A+AE +E FV M Sbjct: 122 NAWRRGGAPSGGSTMFAAIHSIVSVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKMQ 181 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ +GL+ + F N +G+ + + R++ L+ + +P F + + Sbjct: 182 ARAREIGLARSTFGNTNGLPDPDNKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKIR 241 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + + GADG+KTG+T GF +V SA+Q L+ V+ G D R + L Sbjct: 242 QQNRNPLLASLDGADGLKTGYTKEGGFGMVGSAVQNGTRLVVVVNGLSDAADRAAAAKRL 301 Query: 260 LSMGFYNKTDR 270 L GF N R Sbjct: 302 LEWGFKNFETR 312 >gi|147678211|ref|YP_001212426.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146274308|dbj|BAF60057.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 407 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 14/261 (5%) Query: 14 SNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 ++ P + + ++D G V+ E PD PAS TK+MTA + Sbjct: 18 ASASPLQASSGPEIVGEAAVVIDIKNGQVLFEKNPDRRVYPASTTKIMTAVIALE----- 72 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 L + + A S+ ++G ++L++ L L++ S ND AVAIA + + + Sbjct: 73 NGRLDAAVAVPGEACNIEGSSIGLQEGEKISLEDLLYALMLNSGNDTAVAIACHVGGSVE 132 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FV MN + LG THF N +G+ GHY+TA DMA++S R P++ + Sbjct: 133 AFVSMMNKKAAELGAVNTHFNNPNGLPDPGHYSTAYDMALIS-RYAMQNPEFRKIVSTRV 191 Query: 193 LEIKGK------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 I+ N N + + GA G+KTG+T +G +V+SA + + L+AV++ + Sbjct: 192 KTIRRSVPDAQVYLENHNRLLWLYEGATGVKTGYTVEAGQCLVSSAARQGRELLAVVMKS 251 Query: 247 LDRNTRNKVSASLLSMGFYNK 267 N S SL+ F Sbjct: 252 EGSNI-WSDSTSLMDYCFKEF 271 >gi|261406005|ref|YP_003242246.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] gi|261282468|gb|ACX64439.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. Y412MC10] Length = 394 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 18/283 (6%) Query: 5 LVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++I +L P + +N L+D +G ++ D ASLTK+MT Sbjct: 15 MLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTKIMT 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A V L + +SKNA S+ K G MTL+N L L+++S ND A Sbjct: 75 AIVAIEH-----GKLDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGNDAAT 129 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE + TE+ FV MN + +LG++ +HFMN HG+ HY++A D+A L+ Sbjct: 130 AIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLT-AYALKN 188 Query: 182 PQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + + + K+ N N + + GADG+KTG+T + +V+SA + Sbjct: 189 PVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRN 248 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 Q + AV L D N N S +L GF + +K K Sbjct: 249 GQQIAAVTLN--DGNDWNDHSN-MLDYGFAHFPLKKVTEKGQK 288 >gi|329929810|ref|ZP_08283486.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] gi|328935788|gb|EGG32249.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5] Length = 394 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 18/283 (6%) Query: 5 LVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++I +L P + +N L+D +G ++ D ASLTK+MT Sbjct: 15 MLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTKIMT 74 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A V L + +SKNA S+ K G MTL+N L L+++S ND A Sbjct: 75 AIVAIEH-----GKLDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGNDAAT 129 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 AIAE + TE+ FV MN + +LG++ +HFMN HG+ HY++A D+A L+ Sbjct: 130 AIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLT-AYALKN 188 Query: 182 PQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + + + K+ N N + + GADG+KTG+T + +V+SA + Sbjct: 189 PVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRN 248 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 Q + AV L D N N S +L GF + +K K Sbjct: 249 GQQIAAVTLN--DGNDWNDHSN-MLDYGFAHFPLKKVTEKGQK 288 >gi|238650925|ref|YP_002916781.1| penicillin-binding protein dacF precursor [Rickettsia peacockii str. Rustic] gi|238625023|gb|ACR47729.1| penicillin-binding protein dacF precursor [Rickettsia peacockii str. Rustic] Length = 306 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 138/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIQIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AV +AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ Sbjct: 123 ANDAAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAASRDQKMMGLLDQHFN 272 >gi|76818571|ref|YP_335397.1| peptidase [Burkholderia pseudomallei 1710b] gi|126456879|ref|YP_001075694.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242313141|ref|ZP_04812158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254265595|ref|ZP_04956460.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gi|76583044|gb|ABA52518.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b] gi|126230647|gb|ABN94060.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gi|242136380|gb|EES22783.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gi|254216597|gb|EET05982.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 333 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|253682546|ref|ZP_04863343.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D str. 1873] gi|253562258|gb|EES91710.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D str. 1873] Length = 391 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 34/343 (9%) Query: 6 VIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 +++A+ +S IF A + L++ +TG +I + + PAS+TK+MT Sbjct: 11 LLLAVLFISQIFVVNVKAAEGSLDVEAKAGLLMEPSTGKIIYKKNVHEKFAPASVTKIMT 70 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSAND 118 + + K L+ + +S+NA + S+ G T+++ LK + + S ND Sbjct: 71 MLLTMEAIDSGKIKLSDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAIASGND 130 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + +E +FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S + Sbjct: 131 AATALAEYIGGSESRFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIMSCELL 190 Query: 179 TDFPQYMHYFQIKGLEI-KGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + Y I +G+K P N N V + G DG+KTGFT + + I A+A+ Sbjct: 191 K-HKKILKYSGTYMETISEGRKNPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAV 249 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + + ++A+I+GA RN+ ++ L++ GF +K + + ++ Sbjct: 250 RNNIRMLAIIVGAPTYKVRNRDASMLMNYGFSKFESKKIVT-------------KDSDVE 296 Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + + + E + AK K + E+ KNKITKK Sbjct: 297 KIILDKKGEKFFF------AKAKNDLNVVLERG--SKNKITKK 331 >gi|218533141|ref|YP_002423957.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] gi|218525444|gb|ACK86029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium chloromethanicum CM4] Length = 494 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 21/318 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTGHVIAENYPDHP 50 +A+ +L+ F +++A+ + ++D +G + D Sbjct: 14 AVAVLLLATSF-LVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K Sbjct: 73 RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+ KSAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASL----LSMGFYNKTDRKKINYIIKDFYQQNLS 286 +A GD+ ++A++LG +R+++ A L L F + + + ++ Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVA 312 Query: 287 NEVPNISEEVCTTQKEII 304 + + E I Sbjct: 313 EADSRTRTVLASADDEDI 330 >gi|326402423|ref|YP_004282504.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum AIU301] gi|325049284|dbj|BAJ79622.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum AIU301] Length = 422 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 1/258 (0%) Query: 16 IFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 P + + T + Y L+D +TG VIA PD PW PASLTKLMTAY+ + + Sbjct: 65 AIPGVPMPPTLPQQASYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSL 124 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + + +S +A S G T+T+D L LI+ S ND AVA+A+++ + F Sbjct: 125 KMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGF 184 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN+ +K LGL +TH+ N G+ TTA D+A LS I +PQ++ K Sbjct: 185 VGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFT 244 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N + DG+KTG T +G I A+A++ + LIAV+LG Sbjct: 245 FDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTH 304 Query: 255 VSASLLSMGFYNKTDRKK 272 +LL G+ + K Sbjct: 305 DIEALLDYGYQFYANAKV 322 >gi|148259268|ref|YP_001233395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] gi|146400949|gb|ABQ29476.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11 [Acidiphilium cryptum JF-5] Length = 423 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 1/258 (0%) Query: 16 IFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 P + + T + Y L+D +TG VIA PD PW PASLTKLMTAY+ + + Sbjct: 66 AIPGVPMPPTLPQQASYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSL 125 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + + +S +A S G T+T+D L LI+ S ND AVA+A+++ + F Sbjct: 126 KMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGF 185 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V MN+ +K LGL +TH+ N G+ TTA D+A LS I +PQ++ K Sbjct: 186 VGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFT 245 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N + DG+KTG T +G I A+A++ + LIAV+LG Sbjct: 246 FDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTH 305 Query: 255 VSASLLSMGFYNKTDRKK 272 +LL G+ + K Sbjct: 306 DIEALLDYGYQFYANAKV 323 >gi|239501103|ref|ZP_04660413.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii AB900] Length = 439 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLTYAYTRDEVVI-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIK 300 >gi|296533026|ref|ZP_06895674.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] gi|296266655|gb|EFH12632.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis ATCC 49957] Length = 293 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 148/268 (55%), Gaps = 3/268 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKL 59 +R+ ++ A +L N+ P L+ A+ Y +++ N+G+V+ D P +PASLTK+ Sbjct: 7 LRRLGLLAATTVLFNL-PGLAQAQIGSARYAAVVIEPNSGNVLFGANADAPRHPASLTKM 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+VF L+ + L + +++ A+ PPS G T+T++NA+ L+ KSAND+ Sbjct: 66 MTLYMVFDALRAGRLELDQRLEMTETAASRPPSKLGLPPGRTITVENAIYALVTKSANDV 125 Query: 120 AVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A + E+ +E +F Q M ++ +G+++T F NA G+ TTA DMA L R+ Sbjct: 126 AALLGETLGAGSEARFAQMMTLRARAMGMTSTTFRNASGLPDVEQITTAHDMATLGRRLL 185 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 DFP+ HYF + + N N + + G DG+KTG+ SGFNIV SA + + Sbjct: 186 HDFPERYHYFGTRTHRMGSIALRNHNRMLDEYEGVDGIKTGYINDSGFNIVTSARRSNVR 245 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266 L+ + G R++ +A+LL GF Sbjct: 246 LVVAVFGGSSWVERDRHAAALLERGFSQ 273 >gi|240141656|ref|YP_002966136.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens AM1] gi|240011633|gb|ACS42859.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens AM1] Length = 494 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 21/318 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTGHVIAENYPDHP 50 +A+ +L+ F +++A+ + ++D +G + D Sbjct: 14 AVAVLLLATSF-LVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K Sbjct: 73 RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+ KSAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASL----LSMGFYNKTDRKKINYIIKDFYQQNLS 286 +A GD+ ++A++LG +R+++ A L L F + + + ++ Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVA 312 Query: 287 NEVPNISEEVCTTQKEII 304 + + E I Sbjct: 313 EADSRTRTVLASADDEDI 330 >gi|167915042|ref|ZP_02502133.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 112] Length = 333 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|188586281|ref|YP_001917826.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350968|gb|ACB85238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 395 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 167/355 (47%), Gaps = 27/355 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 R+ +++ + + ++ S A+T+ + P Y L + +G ++ E PAS+ Sbjct: 3 RKISLVLVLFLAISLVFQGSTAKTSPEDELEAPVYLLGEPKSGEILLEQDKQEQVYPASI 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT + L+ ++ L + + + A + P + ++G +T+D+ + + V SA Sbjct: 63 TKIMTLLLTMEALENEQIALEEEVIVPREAEDIPGTTIFLQQGEKITVDDLITAIAVGSA 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND ++AIA+ + T FV MN+ ++ LG+ T+F N HG+ H TTA D+ I++ Sbjct: 123 NDASIAIAKHISGTVDNFVDEMNDKARELGMKNTNFENPHGLHHDEHVTTAEDIFIMASE 182 Query: 177 I-----------KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 + ++ ++ + +G NTN V + G DG KTGFT S Sbjct: 183 LGKYEEIHDWLEIWLIEDFLQGKKVVEDDEEGIFLSNTNRLVNQYPGCDGFKTGFTEESK 242 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQ 282 +I A+A Q + IA+I+ D + R + + +LL GF N +K + + + Sbjct: 243 HSITATAKQNGERYIAIIMSHEDSDGRFEEAMNLLDYGFANYQTNTILEKGDLVARVKIN 302 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI--DFEKITLLKNKITK 335 + +P + +E E++ + E + +E H I D + +K+ + Sbjct: 303 KGDQEYLPLLVKE------ELVAVTEESDEIEIEEEHQIPDDLSPPIVEGDKVGE 351 >gi|315646383|ref|ZP_07899501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315278026|gb|EFU41346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 394 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 131/284 (46%), Gaps = 19/284 (6%) Query: 5 LVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++I +L I P + N L+D +G ++ D ASLTK+M Sbjct: 14 MLIAVCCLLVTIAPVVYADHEKGPANHAQAAALIDVTSGRMLYSKNGDERLRIASLTKIM 73 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA V L + ISKNA S+ K G MTL+N L L+++S ND A Sbjct: 74 TAIVAIEH-----GKLDDRVKISKNAFAKEGSSIFLKLGEEMTLENLLFGLMLRSGNDAA 128 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AIAE + TE+ FV MN + LG++ +HFMN HG+ HY++A DMA L+ Sbjct: 129 TAIAEHVGGTEEGFVMLMNEKAAQLGMTNSHFMNPHGLDHDEHYSSANDMAKLT-AYALK 187 Query: 181 FPQYMHYFQIKGL------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 P + + E K+ N N + + GADG+KTG+T + +V+SA + Sbjct: 188 NPVFSEIVKTPTKKAPNPNESWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSATR 247 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 Q + AV L D N N S +L GF + +K K Sbjct: 248 NGQQIAAVTLN--DGNDWNDHSN-MLDYGFAHFPLKKVTEKGQK 288 >gi|188584526|ref|YP_001927971.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] gi|179348024|gb|ACB83436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi BJ001] Length = 494 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 170/341 (49%), Gaps = 21/341 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTGHVIAENYPDHP 50 +A+ +L+ F +++A+ + ++D +G + D Sbjct: 14 AVAVLLLATSF-LVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K Sbjct: 73 RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+ KSAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 IL+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ Sbjct: 193 TILARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 +A GD+ ++A++LG +R+++ A L+ N + Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVR---ANLPRAYAGARQTAPVVEVAERGRPA 309 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESH-FIDFEKITLLK 330 ++E T+ + + + E + S +D T Sbjct: 310 VVAEADSRTRTVLASADDDTVETTNSTSTAPLDIRPATTTP 350 >gi|163868095|ref|YP_001609299.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161017746|emb|CAK01304.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 449 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/314 (30%), Positives = 152/314 (48%), Gaps = 6/314 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + I+ ML + + + P ++D TG + + PASLTK+MT Sbjct: 15 IAISFIMLVSSYCWAFATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASLTKMMTL 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ ++ TPI +S A+ PP+ FK G T++ + A K LI +SAND+A A Sbjct: 75 YLLFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAEAAAKALITRSANDVATA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE L +EK F + M ++ LG+ THF NA G+ +Y+TARD+A LS ++ FP Sbjct: 135 IAEYLGGSEKNFARMMTAKARKLGMKHTHFANASGLPDVQNYSTARDIATLSLALRQHFP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + F+ K +G + N V G DG+KTG+T SG N+ S +S++AV Sbjct: 195 KQYKLFKTKSFNFRGHTINSHNKLVKVMKGVDGIKTGYTQMSGSNLATSMRLEGRSVVAV 254 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNISEEVCTT 299 ++G R++ ASLL+ K ++ + Q +P I + Sbjct: 255 VMGGKSSTARDEHMASLLNQYLPKANQMKSGERLMASVHYQLPTGAKTPIPAIKADSSNV 314 Query: 300 QKEIINYNTQMKEA 313 EI T E Sbjct: 315 DDEISTMLTAFAEQ 328 >gi|85858430|ref|YP_460632.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus aciditrophicus SB] gi|85721521|gb|ABC76464.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus aciditrophicus SB] Length = 310 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 124/241 (51%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 ++ L+D V+ E D P PASLTK+++ Y+ + + + + + +S+ Sbjct: 57 APEIKSSILMDMTDRRVLYEQNADQPIQPASLTKVLSLYLTYEAMAQGRVRWLDSVVVSQ 116 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A + S + G + L+ +K + V SAND +VA+AE + +FV+ MN + Sbjct: 117 AARQADGSRMYIEAGERVPLETLIKGMTVISANDASVAVAEHVAGNVDRFVERMNRKAGE 176 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG++ + F +G+ G YTTARDM IL+ FP + ++ K N N Sbjct: 177 LGMTHSVFRTPNGLPAEGQYTTARDMMILADAYLRRFPGSLALHSMQYYTYKKITQHNCN 236 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + DG+K+GF ASG+N++A+A +G+ LIAV++GA R + + LL GF Sbjct: 237 ALLKKYPDVDGLKSGFVRASGYNLIATARRGNTRLIAVVMGARTPEIRVRETRRLLDAGF 296 Query: 265 Y 265 Sbjct: 297 Q 297 >gi|254707442|ref|ZP_05169270.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261314930|ref|ZP_05954127.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261303956|gb|EEY07453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] Length = 295 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 176/299 (58%), Gaps = 7/299 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L I A+ + A +D TG V + W PASLTK+M Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++ Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ + Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177 Query: 181 FPQYMHYFQIKGLEIK-GKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FPQY HYF + ++ GKK N N +G + GADGMKTGF CASGFN+ SA + ++ Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 ++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAIC 295 >gi|229077103|ref|ZP_04209808.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|228706203|gb|EEL58487.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 453 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 147/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + L + + AET + L++ ++G ++ E D Sbjct: 23 KRFIAIVTVITLFCSIVVAFGRAAAETVSAIDVEAGSAILIEESSGKILYEKNADESLAI 82 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 83 ASMTKMMSEYLVHEAMDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+NA G+ Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDLKGYHPE 202 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +K Y + + + V N ++ Q + K KD Sbjct: 323 FEVKKV--YGKDAVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKD 369 >gi|229051351|ref|ZP_04194858.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228722004|gb|EEL73442.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] Length = 442 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 162/377 (42%), Gaps = 52/377 (13%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ E D Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKD---KE 317 +K+FY ++ + V N ++ Q + K KD KE Sbjct: 312 FE--------VKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKE 363 Query: 318 SHFIDFEKITLLKNKIT 334 ++ E+ +K +T Sbjct: 364 FKVLNKEQEAPIKKGVT 380 >gi|303327144|ref|ZP_07357586.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. 3_1_syn3] gi|302863132|gb|EFL86064.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp. 3_1_syn3] Length = 256 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 129/248 (52%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L++ NTG V+ E D PASLTKLM+ ++ +K + L + +S+ A+ Sbjct: 5 SAILVNLNTGRVLYEQSADTAIPPASLTKLMSMFLTLDAVKAGRISLNRKVKVSRQAAAT 64 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ + G + L L + V S ND A+ +A+ + + FV+ MN ++ LG+ Sbjct: 65 GGSSMHLRAGERVPLVRLLTGMAVASGNDAAMTVAQHVHGNSRTFVRQMNRKARALGMRR 124 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ G TTARDM LS P M + + +G+ NTN +G+ Sbjct: 125 TLFKNPTGLPAAGQKTTARDMMTLSRAYLKAHPDAMRFHGTRFFLHRGRTMRNTNALLGS 184 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G +G+KTG+T ASG+NIV +A +G L+AV+LG ++ R+ + L+ GF + + Sbjct: 185 VAGVNGLKTGWTVASGYNIVITAQRGKTRLLAVVLGGNSKDRRDISARRLIEAGFRHPSS 244 Query: 270 RKKINYII 277 K++ + Sbjct: 245 PKQVQRAL 252 >gi|312109161|ref|YP_003987477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] gi|311214262|gb|ADP72866.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] Length = 450 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 141/364 (38%), Gaps = 37/364 (10%) Query: 7 IIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + + + PF + + L+D NTG ++ + D AS+TK+MT Sbjct: 12 FLMIGLCFYFLPFHAAKAAVDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMT 71 Query: 62 AYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 Y++ +KEK+ T S + SN +K T+ + + + SAN Sbjct: 72 EYLLLEAVKEKRVKWDQQYTPSDYVYRLSQDRALSNVPLRKDGKYTIRELYEAMAIYSAN 131 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163 VAIAE + +E+ FV+ MN + LGL F+N+ G+ + Sbjct: 132 AATVAIAEIVGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEEN 191 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGAD 214 +AR +A L++ + ++P+ + + K N NW + + G D Sbjct: 192 VMSARSVATLAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVD 251 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTD 269 G+KTG+T +G+ +A + I V++ A R + + LL GF N + Sbjct: 252 GLKTGYTEFAGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSM 311 Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 +K + + + L T K + +E + + D +K+T Sbjct: 312 KKLYSKGYELKGKSVLPVVKGKEKSVAIATDKPLSLVVKNGEEKNYRPVYVFDKKKLTAD 371 Query: 330 KNKI 333 Sbjct: 372 GELT 375 >gi|15892459|ref|NP_360173.1| penicillin-binding protein dacF precursor [Rickettsia conorii str. Malish 7] gi|15619614|gb|AAL03074.1| penicillin-binding protein dacF precursor [Rickettsia conorii str. Malish 7] Length = 306 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 93/270 (34%), Positives = 139/270 (51%), Gaps = 6/270 (2%) Query: 2 RQFLVIIAMAMLSNIFPFL----SIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ + P ++ T K P ++D +G V+ + PAS Sbjct: 3 RKFLLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KS Sbjct: 63 LTKLMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+AV +AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ Sbjct: 123 ANDVAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHNPLQQTTARDMAKLAM 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P++ F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +SLIAV+ G +R++ LL F Sbjct: 243 GKSLIAVVTGGKSAASRDQKMMGLLDQHFN 272 >gi|220904314|ref|YP_002479626.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868613|gb|ACL48948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 258 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 127/248 (51%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L++ +TG ++ D PASLTK+MT Y+ ++ K I I+ + Sbjct: 5 SAILINMDTGKILYAKNADMAIPPASLTKVMTMYLAMDQIRAGKIKPGEKIRITPQVAAV 64 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ + G + L L + V S ND A A+A + +++FV+ MN +K LG++ Sbjct: 65 GGSSMHLRAGERVALSQLLTGMAVVSGNDAATAVARRVGGNDRQFVRAMNQKAKALGMNR 124 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F N G+ G TTARDMA ++ P + Y ++ L + +K NTN +GT Sbjct: 125 TTFKNPTGLPAAGQKTTARDMARMTRAYLRSHPSALRYHSVQLLTYRDRKTRNTNGLLGT 184 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G +G+KTG+T ASG+N++ + +G ++AV++G R R+ + L+ GF + Sbjct: 185 VAGVNGLKTGWTVASGYNLIVTGQRGKTRMLAVVMGGTSRVGRDNAARRLIEAGFRHPAS 244 Query: 270 RKKINYII 277 KK+ + Sbjct: 245 PKKVQQMF 252 >gi|150395730|ref|YP_001326197.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150027245|gb|ABR59362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 405 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 147/262 (56%), Gaps = 6/262 (2%) Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M +F L + +A+L F A+ ++D TG V++ PD +PASLTK+ Sbjct: 1 MTRFRLALATIAVL-----FFGTAQAVAGSASLVVDARTGRVLSAENPDTLNHPASLTKM 55 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F L + TP+ +S A+ PP+ + G T+T+ A+ +IV+SAND Sbjct: 56 MTLYMTFEALHRGQLAWKTPVPMSATAARKPPTKLGVRPGETITVQEAVYGMIVRSANDA 115 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A A+AE L TE+ F + MN ++ LG++ T F+NA G+ TTARDMA L+ + Sbjct: 116 AAAMAERLGGTEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMR 175 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +P+ F ++ +G+ N + + G DG+KTG+T ASG+N+V++ +G++ L Sbjct: 176 HYPREYRLFSVQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVAEGNRRL 235 Query: 240 IAVILGALDRNTRNKVSASLLS 261 I V+LG +R++ A+LL Sbjct: 236 IGVVLGGRSARSRDEKMAALLD 257 >gi|288556011|ref|YP_003427946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288547171|gb|ADC51054.1| D-alanyl-D-alanine carboxypeptidase (serine) [Bacillus pseudofirmus OF4] Length = 382 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 30/356 (8%) Query: 1 MRQFLVI--IAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ +VI I + +I P + + N +++ +G ++ AS Sbjct: 2 MKKTVVIGLIFFLLSFSIAPQIEVEARNFSVSAEAAIMMEQESGRILYAKNDQTSLRIAS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + + IS NA S+ + G +M L++ + L+++S Sbjct: 62 ITKIMTALLAIES-----GKMQEQVKISTNAEGTEGSSIYLRAGESMLLEDLVYGLMLRS 116 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE + + + FV MN ++ LG++ T F N HG+ H HY++A DMA+L+ Sbjct: 117 GNDAAVAIAEHVGGSLEGFVYLMNEKARELGMNQTQFQNPHGLDDHEDHYSSAYDMALLT 176 Query: 175 WRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230 R + P Y K + G + + N N + + + G KTGFT + +V+ Sbjct: 177 -RYAMESPLYQEISSAKTHRVDGDQIRVWHNKNRLLTELYEYSTGGKTGFTKRARRTLVS 235 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-----IIKDFYQQNL 285 +A + D LI V L A +L + F + + + I +FY+ ++ Sbjct: 236 TASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFDSFSLETLVEEGMFKDIKDEFYKDHV 292 Query: 286 SN----EVPNISEEVCTTQKEIINYNTQMKEAKDK--ESHFIDFEKITLLKNKITK 335 + E P + E Q+++ Y +E +D+ H + ITL KI + Sbjct: 293 FSPYTFEYPLLGSEKEMVQQKVTLYRPPTEEERDQYVPPHPVGKVDITLSGEKIGQ 348 >gi|110632991|ref|YP_673199.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110283975|gb|ABG62034.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 287 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 137/263 (52%), Gaps = 5/263 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +L I + +S ++A ++ ++D +G ++ + D P PASLTK Sbjct: 13 WLAFIVLPFVSGCGSTSAVAPLVQPIESEKYSSIVVDAGSGEILHQYAADAPRYPASLTK 72 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y++F + T+ IT S A+ PPS + G + + A+ L VKSAND Sbjct: 73 MMTLYLLFEAIDSGILSPTSRITASAYAASRPPSKLGLRPGDSFDVQTAILALCVKSAND 132 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +A A+AE L TE++F M ++ LG+ +T F NA G+ G TTARDMA+L+ + Sbjct: 133 VAAAVAEHLGGTEQQFAGMMTAKARQLGMRSTVFTNASGLPDSGQMTTARDMALLALALH 192 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 FP + H F + +G+ N +G G DG+KTG+ ASG+NI SA +G + Sbjct: 193 NRFPHHYHVFANQSFAHEGRTIKGHNDLLGRVDGVDGIKTGYIRASGYNIATSAARGRKR 252 Query: 239 LIAVILGALDRNTRNKVSASLLS 261 ++ +++G +RN LL Sbjct: 253 IVVIVMGGDTARSRNAHVERLLE 275 >gi|239832060|ref|ZP_04680389.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824327|gb|EEQ95895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 469 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 136/257 (52%), Gaps = 3/257 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 V+ + S P ++ + ++D NTG + + D PASLTK+MT Y Sbjct: 22 LAVVTGCSTASTTIPAIAAGDRY---AAIVIDANTGKTLFASNADAQRYPASLTKMMTLY 78 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ Sbjct: 79 MLFEAMQAGRMSKDTRIPVSAYAAARPPTKIGFRPGQSIRAEDAALAMITKSANDVATAV 138 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E L +E++F Q M ++ LG+ T F NA G+ +TTARDMAILS ++ FP Sbjct: 139 GEYLGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPN 198 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 YF + +G+ N +G G DG+KTG+T ASG+N+ +S + L+AV+ Sbjct: 199 EFSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVV 258 Query: 244 LGALDRNTRNKVSASLL 260 +G +R+ A L+ Sbjct: 259 MGGNTGASRDAHMAQLI 275 >gi|167819885|ref|ZP_02451565.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 91] Length = 309 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|167742710|ref|ZP_02415484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 14] gi|167849724|ref|ZP_02475232.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] Length = 310 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|90420704|ref|ZP_01228610.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90334995|gb|EAS48756.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 313 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 136/256 (53%), Gaps = 8/256 (3%) Query: 14 SNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + + P+ + P +LD +G + E+ D PASLTK+MT Y++ Sbjct: 38 AGLLPYARVGAATATPGVAEVRGESTLVLDFASGRTLYEDAADGLRYPASLTKMMTLYLL 97 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F ++ + +++ + +S+NA+ PPS K G T+ + +A + + VKSAND+A IAE Sbjct: 98 FETIEAGRLSMSSELRVSENAASQPPSKLGLKAGETIRVADAAQAIAVKSANDVATVIAE 157 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 +L +E F M ++ LG+S T F+NA G+ G +TARDMA L + FP Y Sbjct: 158 NLGGSEADFANAMTAKARALGMSRTRFVNASGLPDEGQISTARDMATLGRALLNRFPAYA 217 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F G + G+ Y TN +G+ G DG+KTG+ +GF++ A+A + + +I V++G Sbjct: 218 SLFTRTGFDYNGRHYNATNKLLGSVEGVDGLKTGYIRDAGFHLAATATRRGRRIIVVVMG 277 Query: 246 ALDRNTRNKVSASLLS 261 RN +L+ Sbjct: 278 GRTGRERNARVEALID 293 >gi|56961794|ref|YP_173516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56908028|dbj|BAD62555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 429 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 31/304 (10%) Query: 7 IIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + A+AML+ + P + + T +++ +TG ++ E D AS+TK+MT Sbjct: 1 MAALAMLAFVLGPIKPASAQSLTVDASAAIVVNADTGQILFEQNSDEQLAIASMTKMMTE 60 Query: 63 YVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 Y+V + +TI+ + + + SN ++ T T+ + + + + SAN Sbjct: 61 YIVLESIANGDISWEDEVTITDHLLPLSHQRELSNVPLRQDYTYTVKDLYESMAIYSANA 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYT 165 +A+AE + TE +FV MN ++ LGL F+NA G+ G T Sbjct: 121 STMALAEHVAGTEAQFVAKMNEKAEELGLEKYEFINASGLNNADLQGEHPEGTPADGETT 180 Query: 166 -TARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV----GTFLGADG 215 +AR +A L++ + DFP+ + + N NW + + G DG Sbjct: 181 LSARSVAQLAYHLLKDFPEVLDTASVPEAVFDSGPDEKIDMQNWNWMLPNSPHYYEGVDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 +KTG+T A+G + A+A + LI V++G R+ R + LL GF + + I+ Sbjct: 241 LKTGYTDAAGNSFTATAERDGVRLITVVMGTDTRDDRFNETKKLLDYGFSQFEEHRIIDA 300 Query: 276 IIKD 279 + Sbjct: 301 GTEP 304 >gi|307266908|ref|ZP_07548427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918065|gb|EFN48320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter wiegelii Rt8.B1] Length = 421 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIA--MAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + +++ I P + P L+D TG V+ + PAS Sbjct: 1 MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L L+++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG+T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----------- 273 G +VASA + LI+VI+G N + LL GF N T KK Sbjct: 235 GQVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLVKKTEKGEVVTYIDL 293 Query: 274 ---NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ + +++ EVP E TQ I N + +K + + K TL + Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKNINAPINK-GDTLGYIKYTLNE 349 Query: 331 NKIT 334 +I Sbjct: 350 KEIG 353 >gi|251794126|ref|YP_003008857.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] gi|247541752|gb|ACS98770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2] Length = 428 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 26/334 (7%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 +L L+D +TG V+ E D P PAS+TK+MT Y+V +K K IT+S+ A Sbjct: 47 ELSSAILIDADTGQVVYEVNADEPRPPASMTKMMTEYIVLEQIKSKALNWDEMITVSEEA 106 Query: 87 SEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + P S +G + + + V SAND +A+A ++ +E+ FV+ MN T++ Sbjct: 107 ANTPKDGSQVYLAQGEQYKVKDLYMAMAVGSANDATIALASAIGGSEQGFVEKMNETAQK 166 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKYP 201 LGL++ H+ +A G+ +A+D A L+ I + P+++ Y + + K Sbjct: 167 LGLTSAHYTSATGLAD-TTVISAKDQAKLAQIIIKNDPEFLEYASTTEYKFRPRDDKPIV 225 Query: 202 NTNWAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 N NW + + + G DGMKTG+ A+G+ + +GDQ I+V++ + Sbjct: 226 NINWMLASNKSNTYLKAFAYDGVDGMKTGYISAAGYTFTGTVKRGDQRYISVVMNTKSKE 285 Query: 251 TRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCT---TQK 301 R +A L + F + + I ++ + VP I+E + + Sbjct: 286 ARFNETAKLYNYAFNSLEKKTVIPAKSVVEKAESVKIKKGVKKSVPIITESDISLIVKKG 345 Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 E K E + ++ K Sbjct: 346 ADPKVELTGYELKKPEELVAPIKAGQVVGTATYK 379 >gi|326389891|ref|ZP_08211455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] gi|325994159|gb|EGD52587.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter ethanolicus JW 200] Length = 421 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 41/364 (11%) Query: 1 MRQFLVIIA--MAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + + +++ I P + P L+D TG V+ + PAS Sbjct: 1 MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK++TA + K L +T S N ++ ++ G +TL+ L L+++S Sbjct: 61 TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIA- 174 Query: 176 RIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCAS 224 R P++ +I K + +N + + GADG+KTG+T A+ Sbjct: 175 RYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----------- 273 G +VASA + LI+VI+G N + LL GF N T KK Sbjct: 235 GQVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLVKKTEKGEVVTYIDL 293 Query: 274 ---NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 ++ + +++ EVP E TQ I N + +K + + K TL + Sbjct: 294 GKSHFKLPLIAKEDFYYEVPKGQENSIETQ---IILNKNINAPINK-GDTLGYIKYTLNE 349 Query: 331 NKIT 334 +I Sbjct: 350 KEIG 353 >gi|299769193|ref|YP_003731219.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1] gi|298699281|gb|ADI89846.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1] Length = 439 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 155/324 (47%), Gaps = 26/324 (8%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K IT + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVGVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 GQAVIKETPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSSDLAQRRLLVIVLGTPSAVKRAEIADKLMNLAYTYTRDEVII-------PEQKLI 293 Query: 287 NEVPNISE-----EVCTTQKEIIN 305 E+P + +V T Q I+ Sbjct: 294 AELPVVKSTLKMFKVATKQPTIVT 317 >gi|167582899|ref|ZP_02375773.1| family S11 unassigned peptidase [Burkholderia thailandensis TXDOH] Length = 333 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 9/272 (3%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 V A A + + A + + ++D ++G + + D PASLTKLMTAY Sbjct: 32 LFVSAACAAPNGAQAAPAQAPGIQAVSWLVVDADSGKTLGAHNVDARREPASLTKLMTAY 91 Query: 64 VVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 V F L+ +T++ + + G + + + ++ LIV SAND A Sbjct: 92 VAFDALERAALRWDETVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAA 151 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 + +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+ R+ D Sbjct: 152 LVLAKRIGGSPAGFATLMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRD 211 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GD-- 236 FP + + + N N +G DGMKTG T A+G+ +V +A + G Sbjct: 212 FPAFYTFSSQRHFAYGAFSKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPIGGAR 271 Query: 237 --QSLIAVILGALDRNTRNKVSASLLSMGFYN 266 +IAV+LG R + +LL GF + Sbjct: 272 APHRVIAVLLGEPTEKQRLADARALLDQGFAS 303 >gi|152973863|ref|YP_001373380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022615|gb|ABS20385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 439 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 155/371 (41%), Gaps = 40/371 (10%) Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L S++ S A + L++ ++G ++ + D Sbjct: 7 KRFIAMVTVLTLFFSAFVTYSSVSAETSSALNIEAGAAILVEADSGKILYQKNADELLAI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHKAVDTGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MN+ +K GL F+N+ G+ Sbjct: 127 AMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNKDLKGQHPE 186 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD+AIL+ + DFP+ + +I +G KYP N NW + Sbjct: 187 GTTPDEENKMSARDVAILAQHLIQDFPKVLDTAKIPKKVFQEGGKYPVKMDNWNWMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G +A + LI+V++ R + L GF N Sbjct: 247 IKQYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK---ESHFIDF 323 +K Y + + V N ++ + + K +KD E + Sbjct: 307 FDVKKV--YPKGSSVKGYETVRVENAKDKDVAVETKQAITLPMPKGSKDVYKTEFKEVGK 364 Query: 324 EKITLLKNKIT 334 EK +K T Sbjct: 365 EKEAPIKKGTT 375 >gi|229100275|ref|ZP_04231166.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228683170|gb|EEL37157.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] Length = 453 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ +A+ +I A +P L++ N+G ++ + D Sbjct: 23 KRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 202 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 322 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N ++ Q + K D KE + Sbjct: 323 FEVKNV--YGKDAVVKGHETVRVANAKDKDVVVQTKQAVALPMPKGNNDVYKKEFKVSNK 380 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 381 EQEAPIKKGVT 391 >gi|53722262|ref|YP_111247.1| peptidase [Burkholderia pseudomallei K96243] gi|52212676|emb|CAH38706.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243] Length = 333 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|229065500|ref|ZP_04200748.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|228715818|gb|EEL67590.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 416 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 33/356 (9%) Query: 10 MAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 MA+ ++ + + L++ N+G ++ + D AS+TK+M+ Y+V Sbjct: 1 MAVTFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + +++ SAN +A+A Sbjct: 61 VDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ H + +ARD Sbjct: 121 EEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFP+ + +I KG KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N +K Y Sbjct: 241 PEAGDCFTGTVEKNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKKV--YGKDSVV 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDVYKKEFKVSNKEQEAPIKKGVT 354 >gi|163854196|ref|YP_001642239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] gi|163665801|gb|ABY33168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium extorquens PA1] Length = 494 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 164/318 (51%), Gaps = 21/318 (6%) Query: 7 IIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTGHVIAENYPDHP 50 +A+ +L+ F +++A+ + ++D +G + D Sbjct: 14 AVAVLLLATSF-LVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K Sbjct: 73 RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+ KSAND+A AI E++ +E +F + M +K +G+S TH+ NA G+ TTA D+ Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKAIGMSRTHYANASGLPDPDQITTAHDL 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASL----LSMGFYNKTDRKKINYIIKDFYQQNLS 286 +A GD+ ++A++LG +R+++ A L L F + + + ++ Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVA 312 Query: 287 NEVPNISEEVCTTQKEII 304 + + E I Sbjct: 313 EADSRTRTVLASADDEDI 330 >gi|126444942|ref|YP_001062743.1| peptidase [Burkholderia pseudomallei 668] gi|134283712|ref|ZP_01770410.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|167906685|ref|ZP_02493890.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] gi|237510538|ref|ZP_04523253.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346] gi|126224433|gb|ABN87938.1| family S11 unassigned peptidase [Burkholderia pseudomallei 668] gi|134244894|gb|EBA44990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gi|235002743|gb|EEP52167.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346] Length = 333 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|307945901|ref|ZP_07661237.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4] gi|307771774|gb|EFO30999.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4] Length = 301 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 139/232 (59%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 +L+ TG + D P PASLTK+MT Y++F + + + L+TP+ +S NA+ Sbjct: 66 SVLVLNGYTGRELLSENADAPRFPASLTKMMTLYLLFEEVSKGRYTLSTPLNVSANAASQ 125 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 PPS K GST+T++ A + L +KSAND+A+A+AE++ +E F + M +K+LGL+ Sbjct: 126 PPSKIGLKPGSTITVEQAARALAIKSANDVAIAVAENISGSEAAFARKMTQKAKSLGLTR 185 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209 T F+NA G+ TTARDMA L +K FPQY Y++ + + G+++ TN +G Sbjct: 186 TRFVNASGLPNPRQVTTARDMAKLGMALKRRFPQYASYYKARSVTYNGRRFKATNNLIGK 245 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 G DG+KTG+ SG+N+VA++ + + L+ V++G + R+ L+ Sbjct: 246 VAGVDGLKTGYVRLSGYNLVATSRRNGRKLVVVVMGGASESARDTEVTQLIE 297 >gi|42523517|ref|NP_968897.1| hypothetical protein Bd2044 [Bdellovibrio bacteriovorus HD100] gi|39575723|emb|CAE79890.1| dacA [Bdellovibrio bacteriovorus HD100] Length = 286 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 8/257 (3%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + K + LLD ++G ++AE D PASLTK+MTAY+VFS ++E + + +S Sbjct: 28 PSVKALSWVLLDASSGQILAELNKDQRLPPASLTKVMTAYMVFSEIREGRLSRMDRVKVS 87 Query: 84 KNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + A S+ + G +T++ L+ LIV SAND A+ +AE + ++K F + MN T Sbjct: 88 EQAIIRRPEESSMYLRVGEFVTVEELLRGLIVASANDAALVLAEVVSGSQKAFTEQMNKT 147 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201 ++ LG++ + F N+ G+ HY+TA+D+ +L+ RI +FP+Y Y K L + Sbjct: 148 AQKLGMTQSLFANSSGLYTEKHYSTAKDLGLLAVRISQEFPEYFEYSSSKELTFRDFHKK 207 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ------SLIAVILGALDRNTRNKV 255 NTN + + L DGMKTG A+G+ ++ SA + + IAV+LGA R Sbjct: 208 NTNDLLFSKLPVDGMKTGHIKAAGWCVMVSARKNKRPDKKSERYIAVVLGAPSNQDRFVA 267 Query: 256 SASLLSMGFYNKTDRKK 272 +LL F + K+ Sbjct: 268 GRALLEFAFSQPSTFKE 284 >gi|229119057|ref|ZP_04248397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228664386|gb|EEL19887.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] Length = 453 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ +A+ +I A +P L++ N+G ++ + D Sbjct: 23 KRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 83 ASMTKMMSEYLVHEAVAKGKIKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 202 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 322 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N ++ Q + K D KE + Sbjct: 323 FEVKNV--YGKDAVVKGHETVRVANAKDKDVVVQTKQAVALPMPKGNNDVYKKEFKVSNK 380 Query: 324 EKITLLKNKIT 334 E+ +K +T Sbjct: 381 EQEAPIKKGVT 391 >gi|84516821|ref|ZP_01004179.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis SKA53] gi|84509289|gb|EAQ05748.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis SKA53] Length = 392 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 5/269 (1%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 +IA ++ + A + D TG V+ D P PAS++KLMT Y+ F Sbjct: 8 LIAGLIMICATAAQAQALETSARAAYVYDQTTGTVLLAKDADLPLPPASMSKLMTIYMAF 67 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + + + + + +S +A+ + S+ + +++ L+ +IV S ND +V +AE+ Sbjct: 68 EAIADGRLSIDDVLPVSAHAASFGGSSMFLDTTDRVRVEDLLRGVIVLSGNDASVVLAEA 127 Query: 127 LC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 L TE F + M + ++ LG++ + F+NA G H + +D+ ILS R+ +DFP + Sbjct: 128 LSPDGTEAGFGRMMTDRARQLGMTQSFFVNASGWPAAEHRMSVKDLGILSSRLISDFPTF 187 Query: 185 MHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 F + N+ N + +GADG+KTG T +G+ +V SA+QG++ +I Sbjct: 188 YPLFSETEFAFDNRVPSNSQNRNPILAMGIGADGLKTGHTQEAGYGLVGSAMQGNRRVIF 247 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR 270 V+ G R + S +++ F +R Sbjct: 248 VVTGLQTARDRAEESERIVNWAFRQFAER 276 >gi|153009485|ref|YP_001370700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561373|gb|ABS14871.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 404 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 5/286 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 +I ++A+ +++ + + + D ++G ++ ++ + PASL K+MT Y+ Sbjct: 11 LIASLALGASVLCTSAAMANT---SWVVFDADSGRILGQDDANVQRAPASLAKMMTLYLA 67 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F LK + + +SKNA+ K G T+T+ +A+ +I+ SAND A + E Sbjct: 68 FEGLKTGRLHWDDAMPVSKNAAAKVRMKLWLKPGETITVRDAINGMIIVSANDAATVMGE 127 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQY 184 + +E F + M ++ +G+ +T F+N G+ TTARDMA+L ++ DFP+ Sbjct: 128 YIAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKSTQLTTARDMAVLGMSLRRDFPEQ 187 Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F + + + N + + G DG+KTG+T SG+N+V+SA+ D+ L+ V+L Sbjct: 188 YELFSQRSFTFRDRVRNGHNNLMYRYQGVDGIKTGYTDVSGYNLVSSAVINDKHLVGVVL 247 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 GA R+ A LL+ F + + Q P Sbjct: 248 GAGSARQRDDQMAKLLTR-FGTEGTEATGQLVAMAKPQPVAKQAAP 292 >gi|262372029|ref|ZP_06065308.1| penicillin-binding protein 6B [Acinetobacter junii SH205] gi|262312054|gb|EEY93139.1| penicillin-binding protein 6B [Acinetobacter junii SH205] Length = 439 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ L + L + + ET + ++++D +G +IAE+ PAS Sbjct: 1 MKFILSLFTFFSLLCVNLAHANLLKIAPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ ++ K +T + N + S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIEAGKLRKEDILTATPVVNTVMWDESQMYLKTGEKISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + + +FV MN ++ LG+ THF N G+ HY+TA D+ +L Sbjct: 121 MSANDAAVTLAEKISGSVPQFVARMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I D P+Y++Y ++ + + TN A+ ADG+KTG+T A+G+N+ +A Sbjct: 181 AKAIVQDTPEYLYYSKMPSFSYNQRVHHATNLALKMDPTADGLKTGYTKAAGYNLALTAE 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + LI ++LG R +V+ L+++ F D I + L Sbjct: 241 RPTFNPDVEKRRLIVIVLGTPSAVKRAEVAHKLMNLAFTYTRDEVVI-------PKHRLI 293 Query: 287 NEVPNIS 293 E+P I Sbjct: 294 AELPVIR 300 >gi|313901633|ref|ZP_07835069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313468095|gb|EFR63573.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 521 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 13/258 (5%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ + L+D +G V+ P PAS TK++TA V F L Sbjct: 176 VVAPPPSIDAAAAVLMDQASGQVLFARNPHQRRAPASTTKILTAIVALEF-----GNLDD 230 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T+S++A+ S G +L L L+++S ND AVAIAE + +E F + M Sbjct: 231 VVTVSEHAAATEGSTMDLVAGERYSLRELLWGLMLESGNDAAVAIAEHIAGSEAAFARLM 290 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG- 197 N T+ LGL THF N HG+ H+T+A D+A+++ + Q + + +G Sbjct: 291 NETALRLGLRDTHFTNPHGLHDPAHFTSAYDLAVMTRYALANDYFARLVCQPEKVLCRGD 350 Query: 198 ----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 + +TN + G+KTG T A+G +V+S + LIAV+L + D R Sbjct: 351 GDWVRILSSTNRLLWYHEWIRGVKTGTTGAAGPCLVSSGELEGRRLIAVVLDSGD---RW 407 Query: 254 KVSASLLSMGFYNKTDRK 271 S +LL GF + Sbjct: 408 ADSRALLEWGFDQFAPAQ 425 >gi|225018712|ref|ZP_03707904.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum DSM 5476] gi|224948440|gb|EEG29649.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum DSM 5476] Length = 390 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 13/256 (5%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 I + L++ N+G ++ + AS TK+MT+ + Sbjct: 19 CIPASVQAEPGVSAKAAILIEANSGKILYQKNAQQKLPMASTTKIMTSLIALES-----G 73 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 L T+ +NA + S+ + G +T+ ++++S ND A A+A L + + F Sbjct: 74 NLDEWFTVDENAIKVEGSSMGLQAGDQVTMRTLAYGMLLQSGNDAANAVAVKLAGSAEAF 133 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIK- 191 + MN ++ +G++ +HF+ G+ HY+TA DMA L+ + F + +Q K Sbjct: 134 AEKMNERAQQIGMANSHFVTPSGLDNEEHYSTAEDMAKLARTALQNDGFREICSTYQTKL 193 Query: 192 --GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 G + N N + + G G+KTGFT SG +V++A + LIAV L A Sbjct: 194 EYGNPPYTRWMTNHNRLLKEYEGTIGVKTGFTKKSGRCLVSAAERDGVRLIAVTLNAPSD 253 Query: 250 NTRNKVSASLLSMGFY 265 ++ GF Sbjct: 254 ---WSDHKAMFDYGFS 266 >gi|332977394|gb|EGK14172.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 377 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 132/287 (45%), Gaps = 23/287 (8%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52 MR ++L+ + + + + P S+A ++D +G ++ E Sbjct: 1 MRLTRWLLAVWIGGVLVLLPAESLASHRPDHLELSARAAAVIDVQSGRILYEKKAGQQMR 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 ASLTK+MTA V + LT + + A S+ K G + L++ L L+ Sbjct: 61 IASLTKIMTAIVAIE-----NSDLTEKVKVKPGAVGVEGSSIYLKPGEEIPLEHLLYGLM 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND AVAIAE + + + FV MN ++ LGL THF N HG+ HY++A D+A Sbjct: 116 LRSGNDAAVAIAEHVGGSVEGFVYKMNEKAEYLGLRNTHFQNPHGLDAKEHYSSAEDLAR 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 L+ P++ + + +K+ N N + + G DG+KTGFT S Sbjct: 176 LT-AYALKNPEFRKIVSTQVKTVPWPGEEWHRKWYNKNKMLRLYPGGDGVKTGFTKLSRR 234 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +V+SA + + + V L A + + S LL GF + + + Sbjct: 235 TLVSSATREGRQIATVTLNAPND---WEDSMRLLEYGFRHFQRVRLV 278 >gi|329851344|ref|ZP_08266101.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis biprosthecum C19] gi|328840190|gb|EGF89762.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis biprosthecum C19] Length = 457 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 93/267 (34%), Positives = 142/267 (53%), Gaps = 4/267 (1%) Query: 13 LSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + + P + A+ + ++D TG V D PASLTK+MT Y+ F L Sbjct: 1 MILVSPLKARAQDLSGDARYSAIVVDAVTGEVFYSAKADSARYPASLTKIMTLYMAFDAL 60 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 I +S+NA+ P K G T+ +D+A++L+ + SAND+AVA+AE + Sbjct: 61 AMGTLKPDDTIVMSRNAAGQSPVKVYLKAGETIDVDSAMRLVALYSANDLAVALAEKIGG 120 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 TE++F M ++ LG+ T F+NA G+ ++ARDMAIL+ + D+PQY YF Sbjct: 121 TEERFAALMTIKAQELGMGQTRFVNASGLPDPRQLSSARDMAILARAVMRDYPQYYDYFS 180 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + +G+ Y N N G DGMKTGFT A+G+N+VAS ++ LIAV+LG ++ Sbjct: 181 LPNYTFRGRTYVNHNPLRN-MPGVDGMKTGFTNAAGYNLVASQVKDGHRLIAVMLGGNNK 239 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYI 276 + R + L++ GF R I Sbjct: 240 SQRREHVTFLMNTGFDIFDRRANGEVI 266 >gi|260461046|ref|ZP_05809295.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259033080|gb|EEW34342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 297 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 135/244 (55%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 L++ + ++D TG + E PASLTK+MT Y++F + + Sbjct: 34 SVLAVPAPPQKYAAIVVDAQTGKQLFEVNSTAQRYPASLTKMMTLYLLFEAMDSGRVTKE 93 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T I +S +A+ PP+ F++G T+ +D+A++ ++VKSAND+AVA+ E L +E +F Sbjct: 94 TQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAM 153 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M + ++ LG+++T F NA G+ TTARDMA+L + + FPQ+ HYF +G Sbjct: 154 MTSKARQLGMTSTTFRNASGLPDDSQMTTARDMALLGMALHSRFPQHFHYFSESDFMFRG 213 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N +G G DG+KTG+ ASGFNIV S + LI V++GA RN Sbjct: 214 RLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRRLIVVVMGADSARQRNDHVE 273 Query: 258 SLLS 261 +L+ Sbjct: 274 ALIQ 277 >gi|220926670|ref|YP_002501972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] gi|219951277|gb|ACL61669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacterium nodulans ORS 2060] Length = 403 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 5/252 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 ++ P+ L+D ++G V+ E D P++PAS+ KLMT V+F +++ + + IS+N Sbjct: 35 SQAPHAILVDADSGSVLYEKAADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISEN 94 Query: 86 ASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S+ + S + L + L+ LIV+S ND A+A AE++ TE F Q MN Sbjct: 95 AWRRGGAGGGGSSMFAQLNSKVKLPDLLRGLIVQSGNDAAIAAAEAIGGTEDNFAQIMNR 154 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL+ + F NA G TARD+A L+ + +P+ F + + Sbjct: 155 RARELGLTRSTFRNATGYSAPDQKVTARDLAKLAIHLIETYPEEYKLFAEREFTWNKIRQ 214 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R + LL Sbjct: 215 QNRNPLLAMDIGADGLKTGYLEESGYGLTGSAVQNGQRLVMVVSGLKTARERAAEARKLL 274 Query: 261 SMGFYNKTDRKK 272 GF R+ Sbjct: 275 DWGFRAFEARQV 286 >gi|291562424|emb|CBL41240.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 450 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 11/254 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 P L++ +TG VI E D P NPAS+TK+MT ++F L+ K LT + S Sbjct: 85 PEITAPSAILMEASTGTVICEKNADEPRNPASVTKIMTLILIFDALQSGKIRLTDEVVTS 144 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +A S ++G T++ +K +++ S ND +VA+AE + E FV+ MN +K Sbjct: 145 AHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFIGGDEGTFVKMMNERAK 204 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199 LG+ T F++ G+ H TTARD+A++S + T +PQ +Y I I Sbjct: 205 GLGMEHTKFIDCCGLTDSPEHVTTARDIALMSRELITKYPQITNYTTIWMENITHVTKQG 264 Query: 200 -----YPNTNWAVGTFLG--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 NTN + G+KTG T + + + A+A + LIA I+ A D R Sbjct: 265 TKEFGLSNTNKLLKMATNFEVTGLKTGSTSIAKYCLSATAKKDGVELIAAIMAAPDFKAR 324 Query: 253 NKVSASLLSMGFYN 266 K + +LL+ GF N Sbjct: 325 FKDAVTLLNYGFGN 338 >gi|260881606|ref|ZP_05404816.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260848369|gb|EEX68376.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 399 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 129/275 (46%), Gaps = 14/275 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L+ + +++ S + AE + + L+D +TG V+ + PAS+TK+MT Sbjct: 26 LLAVCLSLSSMTSVRAATAEPDIQAEAAILIDADTGRVLWSKNGEERHYPASMTKMMTCL 85 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + L ITIS+ A+ +G +T + ++ +++ S N AVAI Sbjct: 86 LGIQLLPP-----DAKITISQAAASTEDLPLHIARGDVLTSEELMRGMMMVSDNGAAVAI 140 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + + F + MN ++ LG+ THF N +G+ HY+T DMA L+ P Sbjct: 141 AEHIDGSAAVFAERMNEKAQELGMVNTHFANPNGLTDPNHYSTPHDMARLAQYAMK-NPV 199 Query: 184 YMHYFQIKGLEIKGKKY-------PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + + K + NTN +G + G G+KTG+T A+G + ASA + Sbjct: 200 FRDFVRQKERRVTWIAPAGKTLLAENTNELLGHYEGITGIKTGWTSAAGGCLAASAERQG 259 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 LIAV++ A + R ++L GF N T K Sbjct: 260 VHLIAVLMKAPSEDARFPEMRAILDYGFANVTLAK 294 >gi|218235920|ref|YP_002367173.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264] gi|218163877|gb|ACK63869.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264] Length = 437 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 52/377 (13%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ E D Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 127 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 186 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ ++ +I K + +G KYP N NW + Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKIFQEGGKYPIDMANFNWMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKD---KE 317 +K+FY ++ + V N ++ Q + K KD KE Sbjct: 307 FE--------VKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKE 358 Query: 318 SHFIDFEKITLLKNKIT 334 ++ E+ +K +T Sbjct: 359 FKVLNKEQEAPIKKGVT 375 >gi|217418923|ref|ZP_03450430.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|226198000|ref|ZP_03793572.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gi|217398227|gb|EEC38242.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gi|225929876|gb|EEH25891.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] Length = 333 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|291522275|emb|CBK80568.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7] Length = 430 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A T L++ TG VI E D +PAS+TK+MT +++ L K LT + Sbjct: 66 AVTVISEAAVLMEAGTGTVIYEKNQDVRVSPASITKIMTLLLIYDALYNGKIQLTDEVVT 125 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A S ++G T++ +K +++ S ND +VA+AE + +E+ FV MN + Sbjct: 126 SARAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYVSGSEEAFVGEMNQKA 185 Query: 143 KNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 +LG++ THF++ G+ + HYTTA+D+AI++ + T++P Y I I Sbjct: 186 ADLGMNGTHFVDCCGLTDSNDHYTTAKDVAIMARALITNYPDISQYATIWMENITHVTAK 245 Query: 200 ------YPNTNWAVGTFLG--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTN + G+KTG T +G+ +A++ SLIAV++ A D Sbjct: 246 GSSEFGLSNTNKLLKMANNFEVTGLKTGSTAKAGYCFCGTAVKDGLSLIAVVMDAPDYKI 305 Query: 252 RNKVSASLLSMGFYN 266 R + LL+ GF N Sbjct: 306 RFSEAQQLLNYGFAN 320 >gi|298291483|ref|YP_003693422.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] gi|296927994|gb|ADH88803.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506] Length = 570 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 148/290 (51%), Gaps = 1/290 (0%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D NTG ++ E D +PAS+TK+MT Y++F L+ K L TP+ +S A+ P Sbjct: 62 IIIDANTGRILHEQNADALRHPASVTKVMTLYLLFEQLQAGKMRLNTPLRVSAYAASQQP 121 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S K GST+ +++A++ LI +SAND+AV +AE++ F M ++ LG+S T Sbjct: 122 SKLGVKPGSTIVVEDAIQALITRSANDVAVVVAENISGDASTFAALMTRRARQLGMSRTT 181 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F N +G+ TTARD+A L I+ FP+Y YF+ + +G+ N N G Sbjct: 182 FRNPNGLPNPQQVTTARDLATLGRAIQERFPKYYAYFETRSFMYRGQAIRNHNRMFGRIN 241 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTDR 270 G DG+KTG+T ASGFN++ S Q + +I V++G +R+ +LLS + R Sbjct: 242 GVDGIKTGYTNASGFNLLTSVKQNGRYVIGVVMGGASAASRDNRMVALLSDAMPKSYAGR 301 Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320 +++ + + V ++ + +E K + Sbjct: 302 QQVARMDSVPSGAADDDVVTPVALAAAEPTPTPVAAPAVAQEVARKPATI 351 >gi|255318395|ref|ZP_05359628.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] gi|262378625|ref|ZP_06071782.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter radioresistens SH164] gi|255304387|gb|EET83571.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens SK82] gi|262299910|gb|EEY87822.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter radioresistens SH164] Length = 437 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 156/324 (48%), Gaps = 26/324 (8%) Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F L + A L+N + E+ + +++LD +G +IAE + +PAS Sbjct: 1 MRIFAYLFILFSLCCASLANARLLQVVPESVEAAAWSILDPQSGQIIAEYNSEVQRSPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ ++ K +T + + S K+G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIENGKLNRNEILTATPVVKMVMWDESQMYLKEGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + F++ MN ++ LG+ THF N G+ GHY+TA D+A+L Sbjct: 121 MSANDAAVTLAERISGNVPAFIERMNQEAQKLGMKNTHFTNPAGITMDGHYSTAHDLALL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + D P Y++Y + + + TN + DG+KTGFT A+G+N+ +A Sbjct: 181 GQALVNDTPDYLNYSKQQSFTYNNHFHRATNLLLKQDATVDGLKTGFTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + ++ LI V++G R +V+ LL++G+ D I + L Sbjct: 241 RPTMNADLPNRRLIVVVMGTTSAVKRAEVAYKLLNLGYAYTRDEVAI-------KDKQLL 293 Query: 287 NEVPNISE-----EVCTTQKEIIN 305 E+P + +V + Q +II Sbjct: 294 GELPVVKSTLKMFKVKSAQPKIIT 317 >gi|331269461|ref|YP_004395953.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum BKT015925] gi|329126011|gb|AEB75956.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum BKT015925] Length = 379 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 5 LVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + I+ ++ + + + AE + L++ +TG V+ E + PAS+TK+MT Sbjct: 1 MAILFISQICVV--NVKAAEGSLDVEAKAGILMEPSTGKVVFEKNVHEKFAPASVTKIMT 58 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSAND 118 + + K LT + +S+NA + S+ G T+++ LK + + S ND Sbjct: 59 MLLTMEAIDSGKIKLTDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAIASGND 118 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + +E FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S + Sbjct: 119 AATALAEYIGGSESSFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELL 178 Query: 179 TDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + Y I K + N N V + G DG+KTGFT + + I A+A+ Sbjct: 179 K-HKKILKYSGTYMETISEGRKKPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAV 237 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + ++A+I+GA RN+ ++ L++ GF +K + Sbjct: 238 RNNIRMLAIIVGAPTYKVRNRDASMLMNYGFSKFESKKIVT 278 >gi|53716694|ref|YP_105744.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|67641067|ref|ZP_00439854.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] gi|124381420|ref|YP_001024168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10229] gi|126447167|ref|YP_001078428.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei NCTC 10247] gi|254200552|ref|ZP_04906917.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|254204580|ref|ZP_04910933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|52422664|gb|AAU46234.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei ATCC 23344] gi|124289440|gb|ABM98709.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10229] gi|126240021|gb|ABO03133.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC 10247] gi|147748164|gb|EDK55239.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei FMH] gi|147754166|gb|EDK61230.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei JHU] gi|238521922|gb|EEP85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia mallei GB8 horse 4] Length = 333 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|296503035|ref|YP_003664735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|296324087|gb|ADH07015.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 434 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 152/366 (41%), Gaps = 37/366 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++ + + + AET+ + L++ N+G ++ E D AS+TK Sbjct: 9 IVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTK 68 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y+V + + K + IS+ A + SN + G + T+ + + + Sbjct: 69 MMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIY 128 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 129 SANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLE 188 Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFL 211 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + + Sbjct: 189 EKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYE 248 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG T +G + + LI+V++ A R + L GF N + Sbjct: 249 GVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKN 308 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITL 328 Y + + + V N E+ Q + K KD KE + E+ Sbjct: 309 V--YGKDSVIKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAP 366 Query: 329 LKNKIT 334 +K T Sbjct: 367 IKEGGT 372 >gi|157803860|ref|YP_001492409.1| penicillin-binding protein DacF precursor [Rickettsia canadensis str. McKiel] gi|157785123|gb|ABV73624.1| Penicillin-binding protein DacF precursor [Rickettsia canadensis str. McKiel] Length = 306 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 92/272 (33%), Positives = 142/272 (52%), Gaps = 7/272 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 M ++ + + + F +S A+ N + ++D +G V+ + P P Sbjct: 1 MFSKFLLPYIFIATFFFAPISEAKKNVQNTLKPPVQTSLVIDAKSGKVLQSHNSQIPIYP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTKLMT Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+ Sbjct: 61 ASLTKLMTLYLMFESIEAGKLSLDKKLFVSAKASQMPPCKLGLKAGETITVREAINGLII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KSAND AV +AE++ +EK F MN +K LG+ T+F NA G TTARD+A L Sbjct: 121 KSANDAAVTVAENMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + +K D+P+Y F +G N + GA+GMKTGF +G+N+V +A Sbjct: 181 AMALKRDYPKYYPLFSKTSFVFRGNIINGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTAS 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +SLIAV+ G+ +R++ LL F Sbjct: 241 RNGKSLIAVVTGSRSAVSRDQKMIGLLDHYFN 272 >gi|49475404|ref|YP_033445.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49238210|emb|CAF27420.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 449 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 157/324 (48%), Gaps = 4/324 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60 ++ + + LS + F + E Y ++D NTG + + PASLTK+M Sbjct: 13 KKIAIAFVVLALSYSWAFATPQEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y++F + ++ TPI +S+NA+ PP+ K G T++ A K LI +SAND+A Sbjct: 73 TLYLLFEAMHMRRVTPNTPILVSRNAATRPPTKLGLKTGQTISAQEAAKALITRSANDVA 132 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 AIAE L EKKF + M ++ LG+ THF NA G+ +Y+TARDMA LS ++ Sbjct: 133 TAIAEYLGGNEKKFARMMTAKARKLGMINTHFANASGLPDVRNYSTARDMATLSLALRKH 192 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FPQ F+IK G N V T G DG+KTG+T SG N+ S +S++ Sbjct: 193 FPQQYKLFKIKSFIFHGHTVNTHNKLVKTMKGVDGIKTGYTQMSGSNLATSMRIEGRSIV 252 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ---QNLSNEVPNISEEVC 297 AV++G R+K ASLLS + K ++ + +P + + Sbjct: 253 AVVMGGKSSTARDKHMASLLSQYLPKASRMKNDGRLMASAHYNLPNGAQTPIPPVKADPT 312 Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321 + EI T E + I Sbjct: 313 DSDDEISTLLTAFAEQSRNSNTAI 336 >gi|83590204|ref|YP_430213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] gi|83573118|gb|ABC19670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica ATCC 39073] Length = 385 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 88/326 (26%), Positives = 157/326 (48%), Gaps = 26/326 (7%) Query: 3 QFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +FL + LS I P + A + Y L+D TG V+ P A TK+ Sbjct: 8 RFLAAGVFLFIFLSFIKPGRAAAPDIQAESYVLMDFRTGQVLMAKNPHERRPQAITTKIT 67 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA + + L + SKNA+E P S+ ++G T+TL+ L L+++SAND A Sbjct: 68 TAILALE-----RGNLNDQVIASKNAAETPESSIYLQEGETLTLEELLYALLLRSANDAA 122 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VAIAE + + + F + MN + +G TH++N HG+ HY++A D+A++ R Sbjct: 123 VAIAEHIGGSVENFARMMNAKVQEIGARDTHYVNPHGLTAPDHYSSAYDLALIG-RYAMM 181 Query: 181 FPQYMHYFQIKG--LEIKGKKYP----NTNWAVG---TFLGADGMKTGFTCASGFNIVAS 231 P++ + + GK +P N N + + GADG+K G+T +G +VAS Sbjct: 182 NPKFREIVATRQRIIPWAGKPWPRLLINENRLLWGYYAYPGADGVKNGYTTPAGQVLVAS 241 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNE 288 A + + LIAV++ + + + ++++L GF N K + + + ++ Sbjct: 242 ATRDNWRLIAVVMKSPNM---YRETSAILDYGFNNFHQVKLMPAGQQVALAGVRGGIAAN 298 Query: 289 VPNISEE---VCTTQKEIINYNTQMK 311 +P ++ + V + E + +++ Sbjct: 299 IPAVTADDVLVVEPKNETWTWQQRVE 324 >gi|229161434|ref|ZP_04289415.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228621971|gb|EEK78816.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 416 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 145/342 (42%), Gaps = 32/342 (9%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + L++ N+G ++ E D AS+TK+M+ Y+V ++ K + I Sbjct: 15 AIDVEAGSAILVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVENGKLKWDQKVKI 74 Query: 83 SKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 S+ A + SN + G + T+ + + + SAN +A+ E + E FV+ M Sbjct: 75 SEYAYKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEADFVKMM 134 Query: 139 NNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQY 184 N+ SK G+ F+N+ G+ H + +ARD AIL+ R+ DFP+ Sbjct: 135 NDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKI 194 Query: 185 MHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQG 235 + +I +G KYP N NW + + G DG+KTG T +G + + Sbjct: 195 LDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERN 254 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 LI+V++ A R + L GF N +K Y N + V N ++ Sbjct: 255 GMRLISVVIKANSHAARFDETKKLYDYGFANFEMKKV--YGKDAVVNGNETVRVANAKDK 312 Query: 296 VCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 Q + K KD KE ++ E+ +K +T Sbjct: 313 DVVVQTKQAVSLPIPKNNKDVYKKEFKVLNEEQEAPIKKGVT 354 >gi|313901070|ref|ZP_07834558.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] gi|312954028|gb|EFR35708.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2] Length = 395 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 152/350 (43%), Gaps = 32/350 (9%) Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNK---------------LPYYTLLDTNTGHVIAE 44 M++ +V+ +++ + + P A+ +K L++ TG VI Sbjct: 1 MKKLIVLCLSICLCMGLLPQQIHAQDDKTKQEPAQNAQDLAPSAKAAYLVENTTGKVIYA 60 Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 + PAS+TK+M ++F L +KK ++ S+ A+ S + G +M++ Sbjct: 61 KHETDKLYPASMTKMMGLLLIFEALHDKKISWDESVSASEYAASMGGSQVFLEPGESMSV 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164 + +K + + SAND VA+AE + + FV MN+ +K L LS +HFMNA G+ HY Sbjct: 121 RDMVKSICIASANDAMVAMAEKVGGSNDHFVAMMNDKAKELKLSNSHFMNATGLHDPEHY 180 Query: 165 TTARDMAILSWRIK--------TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM 216 T A+DM+I++ + Y Y I+ K NTN + + G DG+ Sbjct: 181 TCAKDMSIIARALIAEGGEELLRITSTYDAY--IRENTDKKFWLVNTNKLLKQYEGVDGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD--RKKIN 274 KTGFT + I +A + D L+AV +G RN +L GF Sbjct: 239 KTGFTTEAMSCITVTAKKKDLRLVAVAMGEPSSKQRNAEIKQMLDYGFSQYAQGLLYPKG 298 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 +K + +N S + T + + + + + K+ I + Sbjct: 299 TKLKTYTMENGKPS----SVNLVTLKDLVYVFEKGSEPKEQKKEITITKD 344 >gi|167723745|ref|ZP_02406981.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98] Length = 318 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSASLL 260 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + +LL Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297 Query: 261 SMGFYN 266 GF + Sbjct: 298 DQGFAS 303 >gi|315643932|ref|ZP_07897102.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] gi|315280307|gb|EFU43596.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus vortex V453] Length = 336 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 23/283 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+VI+ ++ + I + K L+ TG V+ + D P PAS++K+MT Sbjct: 46 FVVILMAVYITRVI----IPPSIKASSAILIHAETGRVLYAQHADLPLPPASMSKMMTEL 101 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 +V ++ + ++IS+ A+ P S +G + TL + LI+ SAND AVAI Sbjct: 102 LVLDAVRSGQHAWDEEVSISRYAAGVPGSGIGMVEGESYTLTQLFQALIIHSANDAAVAI 161 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHG------------HYTTARDM 170 AE L +E +FV+ MN +K +GLS T F NA G+ TARD Sbjct: 162 AEHLKGSETQFVKEMNARAKEIGLSDRTVFANASGLPAADLASFAEAATEGETIMTARDS 221 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAV----GTFLGADGMKTGFTCAS 224 A+L+ I P + + + K TN + ++G DG KTG+T ++ Sbjct: 222 AMLARWIMNKHPDLLEVTSQRDFPLPQKDLTLHTTNLMLPGEAHGYVGNDGFKTGYTSSA 281 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G+ +A +G LI+V++G + R + L++ GF + Sbjct: 282 GYCFTGTAARGGNRLISVVMGTESTDQRFTETRKLMNYGFERQ 324 >gi|167828274|ref|ZP_02459745.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9] Length = 266 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 9/248 (3%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 1 AASWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDI 60 Query: 87 --SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ Sbjct: 61 ASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARR 120 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204 LG+ +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 121 LGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKN 180 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ--GD----QSLIAVILGALDRNTRNKVSAS 258 +G DGMKTG T A+G+ +V +A + G +IAV+LG R + + Sbjct: 181 RLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARA 240 Query: 259 LLSMGFYN 266 LL GF + Sbjct: 241 LLDQGFAS 248 >gi|30020579|ref|NP_832210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29896130|gb|AAP09411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 437 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 152/366 (41%), Gaps = 37/366 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++ + + + AET+ + L++ N+G ++ E D AS+TK Sbjct: 12 IVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y+V + + K + IS+ A + SN + G + T+ + + + Sbjct: 72 MMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIY 131 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 SANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLE 191 Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFL 211 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + + Sbjct: 192 EKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYE 251 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG T +G + + LI+V++ A R + L GF N + Sbjct: 252 GVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKN 311 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITL 328 Y + + + V N E+ Q + K KD KE + E+ Sbjct: 312 V--YGKDSVIKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAP 369 Query: 329 LKNKIT 334 +K T Sbjct: 370 IKEGGT 375 >gi|325265744|ref|ZP_08132433.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans ATCC 33394] gi|324982875|gb|EGC18498.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans ATCC 33394] Length = 489 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 116/255 (45%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 A + Y + D + V+AE P PASLT LM AY+ F L + Sbjct: 132 LSATQSAPHIQAAAYAVYDAQSRQVLAEKNFALPIEPASLTHLMVAYLAFKALDAQTITP 191 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T+S+NA + + ++G + L +++ S ND A+ +AE + +E FV Sbjct: 192 KQEWTVSENAWKSAGNRMFLERGGKANTIDLLHGMLILSGNDAALTLAEGMAGSESAFVA 251 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN ++ LG+ THF N G+ H ++ +D+ ILS + DFP Y F K Sbjct: 252 QMNAEAERLGMRQTHFENVTGLHSPKHVSSVQDLLILSQALLRDFPDYYQIFAKKTFTYN 311 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 PN N + DG+K G++ +G++++ + + + + ++++GA R S Sbjct: 312 KITQPNHNLLLFRNDDVDGLKAGYSDIAGYHLITGSHRNGRRIFSIVIGASSNEARAIES 371 Query: 257 ASLLSMGFYNKTDRK 271 LL+ +K Sbjct: 372 RKLLNYALEAFDTQK 386 >gi|254500491|ref|ZP_05112642.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] gi|222436562|gb|EEE43241.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii DFL-11] Length = 558 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 140/252 (55%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + + + ++A N ++D TG + D PASLTK+MT Y++F Sbjct: 8 MLVVGTLVLCAPTVASANPKYAGIVVDAKTGKTLYAANADAYRFPASLTKIMTTYIIFEE 67 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L+ + +++ + +SKNA+ PS K GST+++ +A+ L+ KSAND+A +AE++ Sbjct: 68 LEAGRLSMSSRLKVSKNAAAEVPSKLGLKPGSTISVKDAIGALVTKSANDVATTVAENIA 127 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E F + M T++ LG+S T F NAHG+ TTARDMA L I+ FP+ F Sbjct: 128 GSEAAFARRMTRTARQLGMSKTTFRNAHGLPNSKQRTTARDMATLGRAIQERFPERYKLF 187 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + + KG+ N N +G+ G DG+KTG+ ASGFN+V S + ++ ++AV++G Sbjct: 188 NTRVYKYKGRNLRNHNRLLGSVKGVDGIKTGYIRASGFNLVTSVQRNNRHIVAVVMGGRT 247 Query: 249 RNTRNKVSASLL 260 RN L+ Sbjct: 248 GARRNAHMTDLI 259 >gi|160915294|ref|ZP_02077507.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991] gi|158433093|gb|EDP11382.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991] Length = 414 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPW 51 M++ L ++ + + +++ P + E + L++ +G VI + + Sbjct: 27 MKKRIMKLALVVLCLSASLLPITARKEVSDVGLKGDAKSVYLMEYTSGKVIYAEHENKRL 86 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TK+M +++ L + + L +T S+ A+ S + T++ ++ +K + Sbjct: 87 YPASMTKMMGLLLIYEALHDGQLQLDDMVTTSEFAASMGGSQVFLEPQETLSAEDMIKSI 146 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 + SAND VA+ E L + + FV MN +K LG++ THFMNA G+ HYTTA+DMA Sbjct: 147 CIASANDAMVAMGEHLAGSHEAFVNKMNRKAKELGMNNTHFMNATGLHDDKHYTTAKDMA 206 Query: 172 ILSWRIKTDFPQY-MHYFQIKGLEIK-----GKKYPNTNWAVGTFLGADGMKTGFTCASG 225 +L + + + + I+ NTN + G DG+KTGFT + Sbjct: 207 LLGQALLKEGGEELLKITSTYDAYIREDSDKKFWLVNTNKLLKQVEGVDGLKTGFTKEAL 266 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 I SA + + LIAV++GA + RN +++ LL GF Sbjct: 267 SCITVSAKRKELRLIAVVMGASNAKARNAIASGLLEYGFAQYAQ 310 >gi|160931733|ref|ZP_02079127.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753] gi|156869378|gb|EDO62750.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753] Length = 382 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 E P L++ +TG V+ E AS+TK+MT +V + + + LT IT S Sbjct: 31 EDLTAPSAVLMEASTGKVLFEKNSHEVRACASITKVMTLLLVMEAIDQGRMSLTDTITAS 90 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 ++AS S+ + G TM+ D+ +K +V SAND AVA+AE L TE+ FVQ MN + Sbjct: 91 EHASSMGGSDIWLEPGETMSADDMVKATVVASANDAAVALAEHLEGTEEAFVQKMNQRAA 150 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYP 201 LG+ T F N +G+ + GH T+A D+A++S + + Y I ++ + Sbjct: 151 ELGMKDTVFKNCNGLDEEGHVTSAYDVALMSRELIK-HEKIFDYTTIWMDTLREGKTQIV 209 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 NTN + ++ G G+KTG T +G I A+A + SLI V+LG+ R +A+LL Sbjct: 210 NTNKLLKSYNGITGLKTGTTGGAGSCITATAQRDGLSLIGVVLGSATGKERFTDAAALLD 269 Query: 262 MGFYNK 267 GF N Sbjct: 270 YGFSNY 275 >gi|239947237|ref|ZP_04698990.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes scapularis] gi|239921513|gb|EER21537.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 134/262 (51%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ A +S + + ++D +G V+ + PASLTKLMT Y Sbjct: 11 FISTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV + Sbjct: 71 LMFESIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTV 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE++ +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P+ Sbjct: 131 AENMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPK 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y F +G N + GA+GMKTGF +G+N+V +A + +SLIAV+ Sbjct: 191 YYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVV 250 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 G +R++ LL F Sbjct: 251 TGGKSAASRDQKMMGLLDQHFN 272 >gi|313901924|ref|ZP_07835342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] gi|313467819|gb|EFR63315.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 142/336 (42%), Gaps = 33/336 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPDHPW 51 V + +A+L+ P + A + L+D TG V+ D Sbjct: 43 LAVALGLAVLAGAVPGVPAARVRAEGSAPQQPPSQDARAAILVDAATGQVLYARNADATM 102 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS TK+MTA + + L IT S+ A S+ G TL+ L L Sbjct: 103 PMASTTKIMTALLAIE-----RGDLQQVITTSQRAFGVEGSSLYLALGEQRTLEELLYGL 157 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++S ND AVAIAE L + + FVQ MN ++ LGL T F + HG+ HYT+ARD+A Sbjct: 158 MLQSGNDAAVAIAEGLAGSVETFVQWMNQRARELGLEHTRFADPHGLASRDHYTSARDLA 217 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASG 225 L+ R+ P + + + + N N + + GA G+K G+T A+ Sbjct: 218 TLA-RVALANPTFRRVVGTREYRMPWPEKNSERVLYNHNRFLWRYDGATGVKNGYTSAAR 276 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +VASA +G L+ V+LGA + A+L+ GF + + Sbjct: 277 GALVASAQRGGVELVGVLLGAH-PTGMYRDMAALMDWGFARFEPLPLVQAGER------- 328 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 +VP + + + Y + +D+ + + Sbjct: 329 VGQVP-VRGGRQDSVAAVAAYGVRWLVPRDEPAPPV 363 >gi|89895253|ref|YP_518740.1| hypothetical protein DSY2507 [Desulfitobacterium hafniense Y51] gi|89334701|dbj|BAE84296.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 379 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 85/311 (27%), Positives = 131/311 (42%), Gaps = 24/311 (7%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + P S+A L+D TG ++ + PAS TK++TA + K Sbjct: 34 GLIPTSSLA--ITADAAVLMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKP--- 88 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + +S+ A+ S G + L + +VKS ND VAIAE + TE+ F Sbjct: 89 --DELVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDF 146 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V+ MN + LG THF N +G+ H +TA D+A+++ R P + ++K E Sbjct: 147 VRLMNQKAFLLGAKNTHFENTNGLPNKNHVSTAYDLALMA-RYGLQIPAFTSITRLKETE 205 Query: 195 IKGK------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I NTN + + DG+KTG T A+G +VA A + + LIAV+L A D Sbjct: 206 IHFIEPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCLVAGATKDGRQLIAVVLHAPD 265 Query: 249 RNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 R + LL GF + I + ++ + P I + T KE Sbjct: 266 ---RFGDAQKLLEWGFNETETLNCVQAGETIEFPAENSEPIKAFAQNP-IQISILKTDKE 321 Query: 303 IINYNTQMKEA 313 + Sbjct: 322 KLEKKIVWTRE 332 >gi|15964646|ref|NP_384999.1| hypothetical protein SMc00068 [Sinorhizobium meliloti 1021] gi|307304223|ref|ZP_07583975.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307320528|ref|ZP_07599943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15073824|emb|CAC45465.1| Probable D-alanyl-D-alanine carboxypeptidase [Sinorhizobium meliloti 1021] gi|306893804|gb|EFN24575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306902691|gb|EFN33284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 409 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 4/303 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M F + +A + ++A L ++D TG V++ PD +PASLTK+M Sbjct: 1 MTSFRLAMATIAVLFFGAVQAMAGNASL----VVDARTGRVLSAENPDTLHHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+ F L + TP+ +S A+ PP+ K G T+T++ A+ +IV+SAND A Sbjct: 57 TLYMTFEALHRGQIAWKTPVPVSATAARKPPTKLGVKAGGTITVEEAVYGMIVRSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE L +E+ F + MN ++ LG++ T F+NA G+ TTARDMA L+ + Sbjct: 117 AAMAERLGGSEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRH 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 +P+ F ++ +G+ N + + G DG+KTG+T ASG+N+V++ ++ LI Sbjct: 177 YPREYRLFSVQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVNDRNRRLI 236 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 V+LG +R++ A+LL + + + +P +S TQ Sbjct: 237 GVVLGGRSARSRDEKMAALLDQHLGRVSSPGRPMIAAASAPRLADVASLPGVSLSYVGTQ 296 Query: 301 KEI 303 + Sbjct: 297 PAV 299 >gi|229074074|ref|ZP_04207123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] gi|229094734|ref|ZP_04225742.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228688672|gb|EEL42542.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-29] gi|228709037|gb|EEL61161.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-18] Length = 444 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 150/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFMALVTVLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+ Sbjct: 132 AMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD+AIL+ + D+P+ + +I +G KYP N NW + Sbjct: 192 GTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 VKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + + K +KD Sbjct: 312 FEMKQM--YKKDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKD 358 >gi|219669686|ref|YP_002460121.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219539946|gb|ACL21685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 379 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 81/268 (30%), Positives = 125/268 (46%), Gaps = 20/268 (7%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 + P S+A L+D TG ++ + PAS TK++TA + K Sbjct: 34 GLIPTSSLA--ITADAAVLMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKP--- 88 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + +S+ A+ S G + L + +VKS ND VAIAE + TE+ F Sbjct: 89 --DELVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDF 146 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 V+ MN + LG THF N +G+ H +TA D+A+++ R P + ++K E Sbjct: 147 VRLMNQKAFLLGAKNTHFENTNGLPSKNHVSTAYDLALMA-RYGLQIPAFTSITRLKETE 205 Query: 195 IKGK------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 I NTN + + DG+KTG T A+G +VA+A + + LIAV+L A D Sbjct: 206 IHFIEPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCLVAAATKDGRQLIAVVLHAPD 265 Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYI 276 R + LL GF + + +NY+ Sbjct: 266 ---RFGDAQKLLEWGFN---ETETLNYV 287 >gi|229021621|ref|ZP_04178209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] gi|228739667|gb|EEL90075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1272] Length = 428 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 142/344 (41%), Gaps = 31/344 (9%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M L I ++ SN A + L++ N+G ++ + D + AS+TK Sbjct: 1 MVTVLTIACSMLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y+V + + K + +S+ A + SN + G + T+ + + + Sbjct: 61 MMSEYLVNEAVAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIY 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQ 160 SAN +A+AE++ E FV+ MN+ SK GL F+N+ G+ Sbjct: 121 SANGATIALAEAVAGKEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPD 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFL 211 + +ARD+AIL+ R+ DFP+ + +I + + PN NW + + Sbjct: 181 EENKMSARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYE 240 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG T +G + + I+V++ R + L GF N +K Sbjct: 241 GVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFANFEMKK 300 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 Y + + V N ++ Q + K +KD Sbjct: 301 M--YEKGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKD 342 >gi|67459001|ref|YP_246625.1| penicillin-binding protein DacF precursor [Rickettsia felis URRWXCal2] gi|67004534|gb|AAY61460.1| Penicillin-binding protein DacF precursor [Rickettsia felis URRWXCal2] Length = 306 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 133/262 (50%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ A +S + + ++D +G V+ + PASLTKLMT Y Sbjct: 11 FIATFFFAPISEAKKAVKNTSKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV + Sbjct: 71 LMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTV 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P+ Sbjct: 131 AEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPK 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y F +G N + GA+GMKTGF +G+N++ +A + +SLIAV+ Sbjct: 191 YYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLITTASRNGKSLIAVV 250 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 G +R++ LL F Sbjct: 251 TGGKSAASRDQKMMGLLDQHFN 272 >gi|229009524|ref|ZP_04166753.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] gi|228751735|gb|EEM01532.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus mycoides DSM 2048] Length = 418 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 29/334 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + SN A + L++ N+G ++ + D + AS+TK+M+ Y+V Sbjct: 1 MLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEA 60 Query: 69 LKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + +S+ A SN + G + T+ + + + SAN +A+A Sbjct: 61 IAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDM 170 E++ E FV+ MN+ SK LGL F+N+ G+ + +ARD+ Sbjct: 121 EAVAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDV 180 Query: 171 AILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFP+ + +I + + PN NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGST 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + I+V++ R + L GF N +K Y Sbjct: 241 PEAGDCFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFANFEMKKM--YEKGSSV 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + V N ++ Q + K +KD Sbjct: 299 KGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKD 332 >gi|304316798|ref|YP_003851943.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778300|gb|ADL68859.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 384 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 16/260 (6%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 ++D +G ++ E + AS TK+MT + + L +T+ Sbjct: 27 PPQIAAKAAIVMDQKSGRILYEKNINEKLPMASTTKIMTLLLALEY-----GNLNDIVTV 81 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 SK A+ S+ G ++L + L L++ S ND A AIAE + + +KF + MN + Sbjct: 82 SKRAASVGGSSIWLAPGEKLSLIDLLYGLMLNSGNDAATAIAEHIGGSVEKFAEMMNKKA 141 Query: 143 KNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--- 197 K++G +T+F+ G+ + HYTTA D+A+++ ++ ++ K I Sbjct: 142 KDIGAYSTNFVTPSGLDIGINNHYTTAYDLALITRYAFNNYSKFAEIVSTKEKTIPWSGR 201 Query: 198 ---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + N N + + G DG+KTGFT +G +VASA + LI+V+L + + Sbjct: 202 DYDRYLRNKNKMLWQYEGGDGVKTGFTNKAGRCLVASATRDGHRLISVVLNSGPM---WE 258 Query: 255 VSASLLSMGFYNKTDRKKIN 274 S +L F K ++ Sbjct: 259 DSQKILDYSFEKYKPLKIVS 278 >gi|13474143|ref|NP_105711.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] gi|14024895|dbj|BAB51497.1| penicillin-binding protein [Mesorhizobium loti MAFF303099] Length = 304 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 145/259 (55%), Gaps = 3/259 (1%) Query: 6 VIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +++ +A S P L++ + ++D TG + E PASLTK+MT Sbjct: 26 LLLMVAGCSTATPPDQVLTVPAPPQKYAAIVVDVKTGKQMFEVNSTAQRYPASLTKMMTL 85 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ + T I +S +A+ PP+ F++G T+ +D+A++ ++VKSAND+AVA Sbjct: 86 YLLFEAMESGRVTKETQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVA 145 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 + E L +E +F M + +++LG+++T F NA G+ G TTARDMA+L ++ FP Sbjct: 146 VGEYLGGSEDRFAAMMTSKARSLGMTSTTFRNASGLPDDGQMTTARDMAVLGMALRQRFP 205 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Q+ HYF +G+ N +G G DG+KTG+ ASGFNIV S + LI V Sbjct: 206 QHFHYFSESDFMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRQLIVV 265 Query: 243 ILGALDRNTRNKVSASLLS 261 ++GA RN +L+ Sbjct: 266 VMGADSARQRNDHVEALIQ 284 >gi|91763271|ref|ZP_01265235.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1002] gi|91717684|gb|EAS84335.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1002] Length = 393 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 137/298 (45%), Gaps = 12/298 (4%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A K L D +G ++ E D PAS+TK+MTA + F ++ L Sbjct: 29 ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 88 Query: 80 ITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+NA S+ G ++++N LK +I+ S ND VA+AE + TE +F Sbjct: 89 FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 148 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M +K +G++ T+F N+ G+ + +T RD+ ++S + +FP+ YF K Sbjct: 149 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 208 Query: 197 G-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N N + LGADG+KTG+ +++ +S + + LIAV G +N Sbjct: 209 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 268 Query: 252 RNKVSASLLSMGFYNKT--DRKKINYIIKDF--YQQNLSNEVPNISEEVCTTQKEIIN 305 R++ SA LL+ G N + K N I+D + I ++ T + Sbjct: 269 RSRESAKLLTWGLTNFDLVEITKANTPIEDIDVWLGKKDTVKTYIKNDIYKTIPKAKK 326 >gi|154498460|ref|ZP_02036838.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC 29799] gi|150272528|gb|EDM99713.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 40/370 (10%) Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNK-------LPYYTLLDTNTGHVIAENYPDHP 50 M++ F +++ +A++ + S A N L+DT G ++ E+ Sbjct: 1 MKKNRVFSLVLTLALICAVLAPFSTAAANSVDDYVVNARSAILVDTTYGEILYEHNSHER 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNA 107 PAS+TK+MT + + + L IT+S N ++ S K G +TL + Sbjct: 61 TYPASITKVMTGLLTIEAIDRGELSLDQQITVSSNVNDGMMSGASTQNLKSGEVLTLKDV 120 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 L ++ SAN+ +AE++ + FV+ MN + LG THFMN HG+ HYTTA Sbjct: 121 LACALIPSANEACNVLAETVAGSIDAFVELMNQRAAELGCEDTHFMNPHGLHDENHYTTA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAV-------GTFLGAD 214 D+ + + + + + +TN + T+ Sbjct: 181 YDIYLFCNEAMKHDI-FRELVTSMNYTVPATNMSEERTFWDTNALITSWKYKGYTYEYCT 239 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGAL--------DRNTRNKVSASLLSMGFYN 266 G+KTG+T +G+ + ++A +GD+SLIAV+ G + T S LL GF N Sbjct: 240 GIKTGYTPEAGYCLASAATKGDRSLIAVVTGCERTPGATGSEGYTHFSESKKLLEWGFSN 299 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID---- 322 + + ++ +E ++ E T ++ + ++ + K + D Sbjct: 300 FSYQSIMSSSKPQLSIPVTLSETDHVVAEPNGTLSAVLPNDVSAEDFEQKVERYYDTLEA 359 Query: 323 -FEKITLLKN 331 EK T+L Sbjct: 360 PVEKGTVLGK 369 >gi|294649783|ref|ZP_06727186.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] gi|292824334|gb|EFF83134.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC 19194] Length = 438 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 21/295 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A L NI P ET + ++++D +G +IAE+ PASLTK+M AYV Sbjct: 18 LAHATLLNISP-----ETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALK 72 Query: 68 FLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ++ K IT + N + S K+G +++D L LIV SAND A+ +AE Sbjct: 73 EIEAGKLRKEDVITATSVVNTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAE 132 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + +F+ MN ++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y+ Sbjct: 133 RISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYL 192 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQS 238 +Y ++ + + TN A+ ADG+KTGFT A+G+N+ +A + + Sbjct: 193 YYSKMPSFSYNQRFHRATNLALKMDSTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRR 252 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 LI ++LG + R +V+ L+++ + D + I + L E+P I Sbjct: 253 LIVIVLGTPNAIKRAEVANKLMNLAYAYTRDEEVI-------PKHQLIAELPVIR 300 >gi|71083689|ref|YP_266409.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1062] gi|71062802|gb|AAZ21805.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter ubique HTCC1062] Length = 383 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 137/298 (45%), Gaps = 12/298 (4%) Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79 + A K L D +G ++ E D PAS+TK+MTA + F ++ L Sbjct: 19 ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 78 Query: 80 ITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +S+NA S+ G ++++N LK +I+ S ND VA+AE + TE +F Sbjct: 79 FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 138 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M +K +G++ T+F N+ G+ + +T RD+ ++S + +FP+ YF K Sbjct: 139 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 198 Query: 197 G-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N N + LGADG+KTG+ +++ +S + + LIAV G +N Sbjct: 199 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 258 Query: 252 RNKVSASLLSMGFYNKT--DRKKINYIIKDF--YQQNLSNEVPNISEEVCTTQKEIIN 305 R++ SA LL+ G N + K N I+D + I ++ T + Sbjct: 259 RSRESAKLLTWGLTNFDLVEITKANTPIEDIDVWLGKKDTVKTYIKNDIYKTIPKAKK 316 >gi|196047683|ref|ZP_03114887.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB108] gi|225862066|ref|YP_002747444.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB102] gi|196021468|gb|EDX60171.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB108] gi|225789232|gb|ACO29449.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus 03BB102] Length = 439 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ Sbjct: 127 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 186 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV--- 207 + ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 187 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 247 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 FEMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKD 353 >gi|153009349|ref|YP_001370564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] gi|151561237|gb|ABS14735.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi ATCC 49188] Length = 469 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 136/257 (52%), Gaps = 3/257 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 V+ + S P ++ ++ ++D NTG + + D PASLTK+MT Y Sbjct: 22 LAVVTGCSTASTTIPAIAASDRY---AAIVIDANTGKTLFASNADAQRYPASLTKMMTLY 78 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+ Sbjct: 79 MLFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATAV 138 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E + +E++F Q M ++ LG+ T F NA G+ +TTARDMAILS ++ FP Sbjct: 139 GEYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPN 198 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 YF + +G+ N +G G DG+KTG+T ASG+N+ +S + L+AV+ Sbjct: 199 EFSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVV 258 Query: 244 LGALDRNTRNKVSASLL 260 +G +R+ L+ Sbjct: 259 MGGNTGASRDAHMTQLI 275 >gi|304316607|ref|YP_003851752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778109|gb|ADL68668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 418 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 158/359 (44%), Gaps = 32/359 (8%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ F I+A +L + P + E+ P L+D TG V+ + PAS Sbjct: 1 MKKTFTFIMAFIILISFIPHVYAIESPPQIVGPTAVLMDFTTGQVLYDKNMHQKMYPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++TA + K L +T++ + ++ G +TL+ L ++++SA Sbjct: 61 TKILTAIIAIE-----KGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESA 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+A+ + + + F MN +K +G + +HF+N +G+ + HY+T DMA+++ R Sbjct: 116 NDAAIAVADHIGGSVQAFADMMNKKAKEIGANDSHFVNPNGLPDNNHYSTPYDMALIA-R 174 Query: 177 IKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCASG 225 + +I K + +N + + GADG+KTG+T A+ Sbjct: 175 YAMGNATFRKIVSTIHYQILPTNKFDKPRDLWISNRLIKPSSFHYDGADGVKTGYTIAAN 234 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQ 283 V SA + LI+VI+G N + +LL GF N T + + I+ Sbjct: 235 QVFVGSATRNGHRLISVIMGDEGTNI-WSDTINLLDYGFNNYTLVNPLEKDSIVTYADVG 293 Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNKIT 334 + ++P I+++ + E N + + +A K+ + T I Sbjct: 294 EVKFKLPLIAKDSFYYAVPKGEENNIKSSITLDNNIKAPIKKGTVLGKIDFTFDGKSIG 352 >gi|206971703|ref|ZP_03232653.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134] gi|206733688|gb|EDZ50860.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134] Length = 437 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 37/366 (10%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++ + + + AET+ + L++ N+G ++ E D AS+TK Sbjct: 12 IVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTK 71 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y+V + + K + IS+ A + SN + G + T+ + + + Sbjct: 72 MMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIY 131 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 SANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLD 191 Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFL 211 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + + Sbjct: 192 EKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYE 251 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG T +G + + LI+V++ A R + L GF N + Sbjct: 252 GVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKN 311 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITL 328 Y + + + V N ++ Q + K KD KE + E+ Sbjct: 312 V--YGKDSVIKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAP 369 Query: 329 LKNKIT 334 +K +T Sbjct: 370 IKKGVT 375 >gi|317122120|ref|YP_004102123.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315592100|gb|ADU51396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 578 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 118/262 (45%), Gaps = 13/262 (4%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P L+D TG V+ E D AS TK+MTA + + L Sbjct: 174 PVPDRPPPQDARAAILVDAATGQVLYERNADATMPMASTTKIMTALLAIE-----RGDLR 228 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 IT S+ A S+ G TL+ L L+++S ND AVAIAE L + + FV Sbjct: 229 QVITTSERAFGVEGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVDW 288 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN ++ LGL T F + HG+ HYT+ARD+A L+ R+ P + + + Sbjct: 289 MNRRAQELGLEHTRFADPHGLASRDHYTSARDLATLA-RVAMANPTFRRIVGTREYRMPW 347 Query: 198 ------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + N N + + GA G+K G+T A+ +VASA + LI V+LGA Sbjct: 348 PEKQSERVLYNHNRFLWRYEGATGVKNGYTSAARGALVASAQRDGVELIGVLLGAH-PTG 406 Query: 252 RNKVSASLLSMGFYNKTDRKKI 273 + A+L+ GF + + Sbjct: 407 MYRDMAALMDWGFARFAPVELV 428 >gi|229089145|ref|ZP_04220429.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] gi|228694186|gb|EEL47865.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-42] Length = 444 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGRHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV--- 207 + ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 FEMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKD 358 >gi|118475787|ref|YP_892938.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str. Al Hakam] gi|229182408|ref|ZP_04309661.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] gi|118415012|gb|ABK83431.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11 [Bacillus thuringiensis str. Al Hakam] gi|228601054|gb|EEK58621.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BGSC 6E1] Length = 444 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV--- 207 + ARD+AIL+ R+ DFP+ + +I + N NW + Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + I+V++ R+ R + L GF N Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 FEMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKD 358 >gi|293609789|ref|ZP_06692091.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828241|gb|EFF86604.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 439 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + +FVQ MN ++ LG+ THF N G+ H+TTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 SQAVIKQTPEYLHYSKMPNFSYNQRFHHATNLALKYDPYVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + + L+ ++LG R +++ L+++ + D I +Q L Sbjct: 241 RPSFSSDLTQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVII-------PEQKLI 293 Query: 287 NEVPNIS 293 E+P + Sbjct: 294 AELPVVK 300 >gi|294083925|ref|YP_003550682.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663497|gb|ADE38598.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum marinum IMCC1322] Length = 394 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 19/303 (6%) Query: 1 MRQFL------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 +++ L V I+ + L+ S T + + D +TG V+ + D PA Sbjct: 2 LKRLLQVTTMSVFISASWLTISNSAGSTEITTPAEFAYITDFDTGKVLFQKNADMQMKPA 61 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+ K+MT ++ F ++E L +S+ A S S + GS +T+ + L +IV+ Sbjct: 62 SMAKIMTIFIAFERIREGGLSLNDKFQVSEKAWRKGGSRSFLEVGSFVTVSDLLNGVIVQ 121 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A+ IAE + TE+ F + MN ++ LG+ T F N+ G TTA+D+ ILS Sbjct: 122 SGNDAAIVIAEGISGTEESFAEEMNFWAQKLGMENTVFRNSTGWPDPELTTTAKDLNILS 181 Query: 175 WRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + +P F+ K E G PN N V +GADG+KTG T SG+ +V Sbjct: 182 SALISRFPIDEYPDLYPMFKKKRFEYNGIDQPNRNPLVYGTVGADGLKTGHTKESGYGVV 241 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 SAI+ Q ++ V+ G R+ S L+ + F + F++ N + +V Sbjct: 242 GSAIREGQRVVMVLNGMTSMKQRSAESRRLMDLAFREFKQYR--------FFEANETVDV 293 Query: 290 PNI 292 N+ Sbjct: 294 ANV 296 >gi|239832000|ref|ZP_04680329.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] gi|239824267|gb|EEQ95835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium LMG 3301] Length = 398 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 6/270 (2%) Query: 6 VIIAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + +A+ + + P + A K P LLD +G V+ + P PASL KLMTA V Sbjct: 18 ISVAVLVPAICSPAPVDAAFVTKAPQVLLLDDRSGTVLLSKNANVPIPPASLAKLMTAEV 77 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119 VF L++ L T +S+NA S + S+ T+ + L+ +IV++AND Sbjct: 78 VFEALEKGLTTLDTAYPVSENAWRTGGAPSGTSTMFARIKSSPTVADLLQGMIVQAANDG 137 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A+ +AE L +E+ F + MN+ ++ LGL+A+ F+N+ G+ G + +D+ L+ I+T Sbjct: 138 AIVLAEGLAGSERAFAERMNDRARELGLAASRFVNSTGLPAEGQTVSLQDLVRLAQHIRT 197 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+Y Y+ N N + +GADGM TGFT ASGF +V SA Q + L Sbjct: 198 AHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRL 257 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + G R + + LL G D Sbjct: 258 YLAMSGLSSVKEREEEAKRLLQWGMTAFDD 287 >gi|229173162|ref|ZP_04300712.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|228610339|gb|EEK67611.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 442 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + L + + AET + L++ N+G ++ E D Sbjct: 12 KRFIAIVTVLTLFCSIVVTSGRATAETVSAIDVEAGSAILVEANSGKILYEKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKIKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEEIAGKEVDFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I G KYP N N + Sbjct: 192 GTTPDEKNKMSARDCAILAKRLVQDFPKILDTAKIPKKTFQNGGKYPIDMVNFNMMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +K + + + + V N ++ Q + K KD Sbjct: 312 FEMKKV--HGKDSVVKGHETVHVANAKDKDVVVQTKQAVSLPMPKGNKD 358 >gi|229027860|ref|ZP_04184018.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] gi|228733452|gb|EEL84276.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH1271] Length = 443 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALLTMLTLACSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G T T+ + Sbjct: 72 ASMTKMMSEYLVHEAVAKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGTYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALGEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPA 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPNKEFRPEKEKFQMLNWNWMLKGLS 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R R + L GF N Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRFISVVIKTNSRQARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +K+ Sbjct: 312 EMKQL--YKKDSSVKGQETVRVENAKDKDVAVQTKQAVSLPVPKGSKN 357 >gi|51893513|ref|YP_076204.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51857202|dbj|BAD41360.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 424 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 89/279 (31%), Positives = 132/279 (47%), Gaps = 17/279 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +++ IIA A+L + L + + L+D TG V+ E PD AS Sbjct: 10 LKRLRAIIACALLLTLLLRLPASADDTWYETSAESGILMDCATGQVLWEKNPDERLAIAS 69 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + L +TI A S +G+T TL L+ LI++S Sbjct: 70 TTKIMTALLAIES-----GRLDETVTIPPEAELIEGSKVYLTQGTTYTLRELLEALILES 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AVAIA L +E+ FV+ MN ++ LGL+ T F N HG+ + GHY++ARD+A L Sbjct: 125 ANDAAVAIAIFLGGSEEAFVRQMNEKARALGLTDTQFRNPHGLDEDGHYSSARDLARLG- 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 R+ P Y + L ++ N N + A G+K G+T A+ F +V Sbjct: 184 RVAMADPVYREIAGTEWLTFPWPEMETTREIYNRNLLIQRMPEATGVKNGYTEAALFTLV 243 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 SA + +I V+LG D+ LL G Y+ + Sbjct: 244 GSAAADGREVIGVLLGNPDKEQMYADMERLLRHGLYDFS 282 >gi|229145091|ref|ZP_04273484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228638412|gb|EEK94849.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] Length = 442 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 161/377 (42%), Gaps = 52/377 (13%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ E D Sbjct: 12 KRFITIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ ++ +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T + + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEARDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKD---KE 317 +K+FY ++ + V N ++ Q + K KD KE Sbjct: 312 FE--------VKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKE 363 Query: 318 SHFIDFEKITLLKNKIT 334 ++ E+ +K +T Sbjct: 364 FKVLNKEQEAPIKKGVT 380 >gi|15604254|ref|NP_220770.1| penicillin-binding protein DACF precursor (dacF) [Rickettsia prowazekii str. Madrid E] gi|3860946|emb|CAA14846.1| PENICILLIN-BINDING PROTEIN DACF PRECURSOR (dacF) [Rickettsia prowazekii] gi|292572000|gb|ADE29915.1| Penicillin-binding protein dacF precursor [Rickettsia prowazekii Rp22] Length = 306 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 6/300 (2%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE----TNKLP--YYTLLDTNTGHVIAENYPDHPWNPAS 55 R+FL+ ++ P + TNK P ++D G V+ + PAS Sbjct: 3 RRFLLPYIFILIFCFAPISEAKKIVKNTNKHPIQTSLVIDAKNGKVLQAHNAQVRIYPAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMT Y++F ++ +K L + +S AS+ P + G +T+ A+ LI+KS Sbjct: 63 LTKLMTLYLIFEAIESRKLSLDKKLLVSAKASKMPHCKLGLRAGDHITVREAINGLIIKS 122 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND+AV +AE + +EK F MN +K LG+ T F NA G+ TTARD+A L+ Sbjct: 123 ANDVAVTVAEGMKGSEKAFAHLMNVRAKTLGMKNTFFKNASGLHDPFQQTTARDIAKLAI 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 +K D+P+Y F +G N + GA+GMKTGF +G+N+V +A + Sbjct: 183 ALKRDYPKYYPLFSKTHFVFRGNVVNGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRN 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 ++SLIAVI G +R++ LL F KT K + + + N + I + Sbjct: 243 NKSLIAVITGGKSAASRDQKMMRLLDHHFGVKTITSKPSIKLASNNKANTKAKSKIIKRK 302 >gi|114799690|ref|YP_760518.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] gi|114739864|gb|ABI77989.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC 15444] Length = 378 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 17/318 (5%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F ++ + LS + +T Y ++D TG ++ D P PAS+TK+MTA+ Sbjct: 2 FAALLTLGALSGASVSAQMIDTP-AEYAVIMDHATGKILYSKRGDEPMTPASMTKMMTAF 60 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118 VVF + + LT T+S++A S T T++ L +I S ND Sbjct: 61 VVFELIDRGELSLTDKFTVSEDAWRRGGFPSGTSTMGLVPKDTPTVEELLHGVITMSGND 120 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 + +A+ + +E+ F + M + LGLS+ +F+N G+ GH +A D+A L+ Sbjct: 121 ACIVLAQGISGSEEAFSRRMTEMAHELGLSSVNFVNTTGLEGDGHVVSAEDLARLAKMTI 180 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 +PQY ++ + + N N + GADG+KTG +SG+ + ASA++ Sbjct: 181 DKYPQYYEWYSLPSYTWREYTQANRNPLL-EVAGADGLKTGHLESSGYGLTASAVRDGVR 239 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 V+ G R + S L+ + F + +K + L +P++ + Sbjct: 240 RTIVVNGLPTMAARAQESERLMRVAFQSFD--------LKTIGPETLV--LPDVEVWLGE 289 Query: 299 TQKEIINYNTQMKEAKDK 316 + ++ ++ A K Sbjct: 290 ARAVPVSLAEPIEVAGHK 307 >gi|328543015|ref|YP_004303124.1| D-alanyl-D-alanine carboxypeptidase superfamily [polymorphum gilvum SL003B-26A1] gi|326412761|gb|ADZ69824.1| D-alanyl-D-alanine carboxypeptidase superfamily [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 + + + ++D +G + D P PASLTK+MT Y++F ++ + L Sbjct: 67 VALVPASAEARGHAALVIDAASGAELFAANADAPRYPASLTKMMTLYLLFEAVERGELTL 126 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 TP+ +S A+ PP+ GST+T+ A + L V+SAND+AVAIAE L +E F Sbjct: 127 DTPLAVSARAAARPPAKIGLATGSTITVREAAQALAVRSANDVAVAIAERLAGSESAFAA 186 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M +++LG+S T F+NA G+ TTARDMAIL +K FPQY YF+ Sbjct: 187 QMTAKARSLGMSRTRFVNASGLADTRQVTTARDMAILGRALKARFPQYAAYFRATSFAYN 246 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 G+ + TN +G G DG+KTG+ SG+N+VA+ +G + + V++G + R+ Sbjct: 247 GRTFEATNKLLGRVPGVDGLKTGYIGLSGYNLVATGSRGGRGFVVVVMGGKSESARDAEV 306 Query: 257 ASLLSMGF 264 L+ F Sbjct: 307 TRLIETYF 314 >gi|226952491|ref|ZP_03822955.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ATCC 27244] gi|226836762|gb|EEH69145.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ATCC 27244] Length = 445 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 21/295 (7%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 +A A L NI P ET + ++++D +G +IAE+ PASLTK+M AYV Sbjct: 25 LAHATLLNISP-----ETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALK 79 Query: 68 FLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ++ K T + N + S K+G +++D L LIV SAND A+ +AE Sbjct: 80 EIEAGKLRKEDVTTATSVVNTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAE 139 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + +F+ MN ++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y+ Sbjct: 140 KISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYL 199 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQS 238 +Y ++ + + TN A+ ADG+KTGFT A+G+N+ +A + + Sbjct: 200 YYSKMPSFSYNQRFHRATNLALKIDPTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRR 259 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 LI ++LG + TR +V+ L+++ + D + I + L E+P I Sbjct: 260 LIVIVLGTPNAITRAEVANKLMNLAYAYTRDEEVI-------PKHQLIAELPVIR 307 >gi|319408389|emb|CBI82044.1| penicillin-binding protein [Bartonella schoenbuchensis R1] Length = 449 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 145/290 (50%), Gaps = 3/290 (1%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ +L+ + P ++D +TG + + PASLTK+MT Sbjct: 15 IVTTFIVLTISYSSAKATPKEAYPDKYAAIVIDAHTGKTLFQANATLKRYPASLTKMMTL 74 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y++F ++ ++ TPI IS A+ PP+ FK G T++++ A K LI KSAND+A A Sbjct: 75 YMLFEAMEVRRVTPNTPIPISAYAAARPPTKIGFKAGQTISVEEAAKALITKSANDVATA 134 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 + E L +E KF + M ++ LG++ T F NA G+ +Y+TA+DMA L+ ++ FP Sbjct: 135 VGEYLGGSEPKFARMMTVKARKLGMTNTRFANASGLPDARNYSTAKDMATLALALRKHFP 194 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 Q F+ +GK N N V T G DG+KTG+T SG N+ S +S++AV Sbjct: 195 QQYKLFKTTSFSFRGKTINNHNKLVKTIKGVDGIKTGYTQMSGSNLATSMHIEGRSIVAV 254 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 ++G R+ +LL+ + +K Y++ + I Sbjct: 255 VMGGKSSTERDIHMTNLLNRYLPRASRKKTNGYLVAAVSYNLPTGAATPI 304 >gi|50084374|ref|YP_045884.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ADP1] gi|49530350|emb|CAG68062.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter sp. ADP1] Length = 436 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 14/287 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F I+++ L + E+ + ++++D +G +I+E+ PAS Sbjct: 1 MRLFFSILSLFSLLCASVAHANLLNIAPESVEAEAWSIVDAQSGQIISEHNSHIQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ LK K T +T + N + S K G +++D L LIV Sbjct: 61 LTKMMVAYITLKELKAGKLHKTDILTATPVVNMVMWDESQMYLKPGEQISIDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + F++ MN ++ LG+ T+F N GV HY+T+ D+A+L Sbjct: 121 MSANDAAVTLAERISGNVPDFLKRMNQEAQALGMKDTYFSNPAGVTMPDHYSTSHDLALL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I P Y+ Y ++ + + + TN A+ ADG+KTG+T A+G+N+ +A Sbjct: 181 AQAIVKQTPDYLSYSKLPSFSYQQRFHRATNLALKIDPTADGLKTGYTKAAGYNLALTAK 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + D+ +I V+LG + + R +V+ L+++ + D + I Sbjct: 241 RPTMNVDIPDRRMIVVVLGTKNAHKRAEVANKLMNLAYAYTRDEEVI 287 >gi|62289988|ref|YP_221781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82699916|ref|YP_414490.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|225627545|ref|ZP_03785582.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237815492|ref|ZP_04594490.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254689296|ref|ZP_05152550.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254697432|ref|ZP_05159260.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|254701819|ref|ZP_05163647.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254706741|ref|ZP_05168569.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710152|ref|ZP_05171963.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis B2/94] gi|254714151|ref|ZP_05175962.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1] gi|254716791|ref|ZP_05178602.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1] gi|254730330|ref|ZP_05188908.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256031647|ref|ZP_05445261.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256159791|ref|ZP_05457534.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M490/95/1] gi|256255049|ref|ZP_05460585.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti B1/94] gi|256257546|ref|ZP_05463082.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256369499|ref|YP_003107007.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260168777|ref|ZP_05755588.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99] gi|260545262|ref|ZP_05821003.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260754808|ref|ZP_05867156.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260758030|ref|ZP_05870378.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260761853|ref|ZP_05874196.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260883826|ref|ZP_05895440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261218589|ref|ZP_05932870.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261222240|ref|ZP_05936521.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|261314205|ref|ZP_05953402.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317706|ref|ZP_05956903.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261321914|ref|ZP_05961111.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261752376|ref|ZP_05996085.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261758258|ref|ZP_06001967.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265988739|ref|ZP_06101296.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|265998204|ref|ZP_06110761.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|297248388|ref|ZP_06932106.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] gi|62196120|gb|AAX74420.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82616017|emb|CAJ11050.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|225617550|gb|EEH14595.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|237790329|gb|EEP64539.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|255999659|gb|ACU48058.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260096669|gb|EEW80544.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260668348|gb|EEX55288.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260672285|gb|EEX59106.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|260674916|gb|EEX61737.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260873354|gb|EEX80423.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260920824|gb|EEX87477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94] gi|260923678|gb|EEX90246.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294604|gb|EEX98100.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|261296929|gb|EEY00426.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303231|gb|EEY06728.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261738242|gb|EEY26238.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742129|gb|EEY30055.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|262552672|gb|EEZ08662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1] gi|264660936|gb|EEZ31197.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|297175557|gb|EFH34904.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str. B3196] Length = 410 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 146/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 23 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 77 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 78 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 138 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 198 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVG 257 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + P++ ++ + Sbjct: 258 VVLGAGSAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLIDDTQ 316 >gi|306843944|ref|ZP_07476539.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] gi|306275699|gb|EFM57423.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1] Length = 397 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 147/300 (49%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 10 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 65 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 125 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 184 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 185 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVG 244 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + + P++ ++ + Sbjct: 245 VVLGAGSAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLIDDTQ 303 >gi|83311331|ref|YP_421595.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82946172|dbj|BAE51036.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 417 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 136/232 (58%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 +D +G VIAE+ P +PASLTK+MTAYV F+ +K K IT+S+ A+ ++ Sbjct: 36 VDLGSGAVIAESRGGAPHHPASLTKMMTAYVAFAAIKAGKVSQDDVITVSERAASQGGAS 95 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 + G +TL ALK +IV+SAND AVA+AE + +E F M + LG++++ F Sbjct: 96 LDLRPGERITLGAALKAMIVRSANDAAVAVAEHVGGSESAFASRMTEEAARLGMTSSSFR 155 Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213 NA G+ GH ++ RDMA+L+ I+ DFP + F + KG+ P N +G + GA Sbjct: 156 NASGMTAGGHVSSPRDMAVLAMAIERDFPTFRPLFSSRDTTWKGRVLPTVNGFLGAYAGA 215 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +GMKTGFTC++G+N+VA A +G + +AV++GA R L+ Sbjct: 216 EGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAESSAQRLGAIRRLMDQALQ 267 >gi|51473579|ref|YP_067336.1| D-alanyl-D-alanine carboxypeptidase. [Rickettsia typhi str. Wilmington] gi|51459891|gb|AAU03854.1| D-alanyl-D-alanine carboxypeptidase [Rickettsia typhi str. Wilmington] Length = 306 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 141/272 (51%), Gaps = 4/272 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+VI A +S + + ++D G V+ + PASLTKLMT Y Sbjct: 11 FIVIFCFAPISEAKKIVKKTNKYPVQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTLY 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ K L + +S AS+ P + G +T+ +A+ LI+KSAND+AV + Sbjct: 71 LMFEAIESGKLSLDKKLLVSAKASKMPHCKLGLRAGDNITVRDAINGLIIKSANDVAVTV 130 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE + +EK F MN +K LG+ T F NA G+ TTARD+A L+ +K D+P+ Sbjct: 131 AEGMKGSEKSFAHLMNVKAKTLGMKHTFFKNASGLHDPLQQTTARDIAKLAIALKRDYPK 190 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 Y +F +G N + GA+GMKTGF +G+N+V +A + ++SLIAVI Sbjct: 191 YYPFFSKTSFVFRGNVINGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRKNKSLIAVI 250 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 GA +R++ LL F K INY Sbjct: 251 TGAKSAASRDQKMIRLLDHHF----GVKTINY 278 >gi|254719144|ref|ZP_05180955.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13] gi|265984138|ref|ZP_06096873.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|264662730|gb|EEZ32991.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] Length = 410 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 146/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 23 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 77 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 78 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DF Sbjct: 138 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRRDF 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 198 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVG 257 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + + P++ ++ + Sbjct: 258 VVLGAGSAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLIDDTQ 316 >gi|209518827|ref|ZP_03267640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] gi|209500712|gb|EEA00755.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160] Length = 273 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 9/247 (3%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYP 90 L+D +G ++ E+ D PASLTKLMTAY+ LK + + + + E Sbjct: 1 MLVDGESGQILLEHNADAKRQPASLTKLMTAYIALDALKHGSVRWDEKVAVNTADIGEVG 60 Query: 91 PS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 G + + + ++ LI SAND A+ +A + T F Q MN+ ++ LG++ Sbjct: 61 GDEARMYLVPGQQVPVRDLVQGLIAASANDAALVLARRVGGTPAGFEQLMNDIARKLGMA 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 THF G+ G+Y+TARD++ L+ R+ DFPQY + + + N NW +G Sbjct: 121 HTHFSTPSGITTPGNYSTARDLSTLAMRLTKDFPQYYTFSSEQHFVYGKFEKRNKNWLLG 180 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDRNTRNKVSASLLSM 262 DGMKTG T A+G+ IVA+A + + + AVILGA N R + SLL+ Sbjct: 181 KDPSVDGMKTGHTQAAGYCIVATAKRKQTAPPMMRRVFAVILGAPTANDRITGAGSLLNY 240 Query: 263 GFYNKTD 269 F D Sbjct: 241 AFSAYKD 247 >gi|189024230|ref|YP_001934998.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|189019802|gb|ACD72524.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] Length = 397 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 146/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 10 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 65 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 125 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 184 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 185 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVG 244 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + P++ ++ + Sbjct: 245 VVLGAGSAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLIDDTQ 303 >gi|208779297|ref|ZP_03246643.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG] gi|254374319|ref|ZP_04989801.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3548] gi|151572039|gb|EDN37693.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3548] gi|208745097|gb|EDZ91395.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG] gi|332678194|gb|AEE87323.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida Fx1] Length = 444 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|187931647|ref|YP_001891631.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712556|gb|ACD30853.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. mediasiatica FSC147] Length = 444 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|254372818|ref|ZP_04988307.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570545|gb|EDN36199.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella novicida GA99-3549] Length = 444 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|229112950|ref|ZP_04242457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228670493|gb|EEL25829.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] Length = 442 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 52/377 (13%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ E D Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKSADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHSE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ ++ +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKD---KE 317 +K+FY ++ + V N ++ Q + K KD KE Sbjct: 312 FE--------VKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKE 363 Query: 318 SHFIDFEKITLLKNKIT 334 ++ E+ +K +T Sbjct: 364 FKVLNKEQEAPIKKGVT 380 >gi|83311550|ref|YP_421814.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] gi|82946391|dbj|BAE51255.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum AMB-1] Length = 388 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 4/272 (1%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R +A+ +++ + + ++D +G V+ E D P+S++KLMT Sbjct: 8 RSLAAALAVPLMALSATAGAQSIETAAKQAIIIDYASGQVLMEKNADELMVPSSMSKLMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 ++VF LK + + +S+ A + S ST T++ LK ++++S N Sbjct: 68 VFMVFDKLKTGAWKPSDRLPVSETAWKRHYKSEGSLMFLPVNSTATVEELLKGVVIQSGN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +AE+ +E+ F + ++ +GL+ + F NA G + GH TARD+++L+ + Sbjct: 128 DACSVLAEAHSGSEEAFAEEETRRARQIGLTRSVFKNASGWPEPGHLMTARDLSVLARHL 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 DFP+Y F G K N N + GADG+KTG T A+G+ + AS +G++ Sbjct: 188 IADFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEAAGYGLTASIKRGNR 247 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +I ++ G R + S L F Sbjct: 248 RIIMILNGMSSMKERAEESRRLTEWAFREWET 279 >gi|306838136|ref|ZP_07470992.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] gi|306406726|gb|EFM62949.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653] Length = 397 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 146/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 10 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 65 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DF Sbjct: 125 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRRDF 184 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 185 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVG 244 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + + P++ ++ + Sbjct: 245 VVLGAGSAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLIDDTQ 303 >gi|229159188|ref|ZP_04287214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] gi|228624269|gb|EEK81069.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus R309803] Length = 443 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLALVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MNN +K LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKAKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I + K N NW + Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPMKVFRPEKEQFKMLNWNWMLKGLS 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + LI+V++ R R + L GF N Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRLISVVIKTNSRQARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 EMKQM--YKKDSSVKGQETLRVENAKDKDVAVQTKQAVSLPMPKGSKD 357 >gi|126726756|ref|ZP_01742596.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2150] gi|126704085|gb|EBA03178.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium HTCC2150] Length = 374 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 3/258 (1%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 P L+ ++D ++G V+ D P PAS++KLMT ++F L + + Sbjct: 3 AAPLLAQNFATPARSAFVIDVSSGTVLLSKDADIPLPPASMSKLMTLNMLFEALVDGRVS 62 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L+ +S+ A + S+ K T + ++ +IV+S ND V +AE L E++F Sbjct: 63 LSDTWRVSQRAQDMGGSSMYLDKRDRPTTEELIQGIIVQSGNDACVVVAEGLAGGEEEFA 122 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 Q M +++LG++ + F NA G + D+ L+ R+ T+FPQ+ YF K Sbjct: 123 QLMTERARSLGMNNSTFGNASGWPHPLQKMSTHDLGTLAVRLITEFPQFYPYFSQKSFAF 182 Query: 196 KGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G+ + N N + +GADG+KTG T +G+ +V SA+QG + ++ V+ G + R Sbjct: 183 DGRVPDNHRNRNPLLALGIGADGLKTGHTNEAGYGLVGSAVQGKRRVVFVVSGLDSASLR 242 Query: 253 NKVSASLLSMGFYNKTDR 270 S + + + Sbjct: 243 ASESERITNWALRQFIQK 260 >gi|330814086|ref|YP_004358325.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp. IMCC9063] gi|327487181|gb|AEA81586.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp. IMCC9063] Length = 379 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 130/271 (47%), Gaps = 10/271 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ +++ L I + + A L+D N+G V+ + + +PAS+TK+M Sbjct: 1 MKKITILLISFFL--IQAYNANALITSAKQAILMDVNSGQVLFKKNENEKISPASITKVM 58 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T+ + F +K + L +S A S+ +T+ N LK +I+ S N Sbjct: 59 TSIIAFDLIKSGELKLNEKFLVSNKAWRMAKQGYSSMFIVPNDRITVLNLLKGIIIASGN 118 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D +A+AE + +E F MN+ +K++G++ T+F N+ G+ +Y+T D++++S + Sbjct: 119 DACIALAEGIAGSEAAFASMMNDKAKSIGMTNTNFSNSSGIYSEDNYSTVSDISLMSVYL 178 Query: 178 KTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 +FP+ + + N N + DG+KTG SG+++ A+ Sbjct: 179 IKEFPELYKMYAERTFTWDRTGGNPITQSNRNTLLYKNSKVDGIKTGHLNDSGYSLAATM 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + ++ +++V+ G + R K S LL+ Sbjct: 239 LVNNRRILSVVSGTNSQKERAKESLKLLNHA 269 >gi|295091220|emb|CBK77327.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 404 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 163/379 (43%), Gaps = 46/379 (12%) Query: 1 MRQFLVIIAMA-----------------MLSNIFPFLSIA---ETNKLPYYTLLDTNTGH 40 M++ L +I A + + + S A + P L++ +TG Sbjct: 1 MKRILSVICAALLLAAVLCQSAFAQKPEIGAEVSAPASAALEGPQIQAPCGILMEASTGT 60 Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 V+ E D NPAS+TK+MT + F LK K LT + S +A S ++G Sbjct: 61 VLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGE 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ +F + G+ Sbjct: 121 VQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTD 180 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFL 211 H +ARD+A+++ + T +P+ +Y I I NTN + Sbjct: 181 SASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKEFGLSNTNKLLKMAT 240 Query: 212 G--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--- 266 G+KTG T + + + A+A + LIAVIL A D R + +LL+ G+ N Sbjct: 241 NFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLLNYGYANCRL 300 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN----------ISEEVCTTQKEIINYNTQMKEAKDK 316 TD + + I + + + VP S E + ++ + T++K + Sbjct: 301 YTD-EDVGEIPEVQILGGVQDTVPVRIDKPFSYLGTSGEDFSGIEKEWIFETELKAPV-Q 358 Query: 317 ESHFIDFEKITLLKNKITK 335 E + L +I + Sbjct: 359 EGEIVGKLVYRLNGKEIGQ 377 >gi|56708118|ref|YP_170014.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670589|ref|YP_667146.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis FSC198] gi|134301929|ref|YP_001121898.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|224457209|ref|ZP_03665682.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370602|ref|ZP_04986607.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis FSC033] gi|254874916|ref|ZP_05247626.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604610|emb|CAG45662.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320922|emb|CAL09045.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. tularensis FSC198] gi|134049706|gb|ABO46777.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568845|gb|EDN34499.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis FSC033] gi|254840915|gb|EET19351.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159318|gb|ADA78709.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella tularensis subsp. tularensis NE061598] Length = 444 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 137/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|148559355|ref|YP_001258933.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] gi|148370612|gb|ABQ60591.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840] Length = 396 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|17987273|ref|NP_539907.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|23501872|ref|NP_697999.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161618945|ref|YP_001592832.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|163843260|ref|YP_001627664.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225627469|ref|ZP_03785506.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|225852496|ref|YP_002732729.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|254689222|ref|ZP_05152476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|254693707|ref|ZP_05155535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|254701743|ref|ZP_05163571.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|254704285|ref|ZP_05166113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|254706813|ref|ZP_05168641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|254710077|ref|ZP_05171888.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|254730255|ref|ZP_05188833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|256031573|ref|ZP_05445187.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|256044652|ref|ZP_05447556.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|256113538|ref|ZP_05454364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|256257472|ref|ZP_05463008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|256264013|ref|ZP_05466545.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|256369413|ref|YP_003106921.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260168704|ref|ZP_05755515.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99] gi|260563998|ref|ZP_05834484.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260566468|ref|ZP_05836938.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260754727|ref|ZP_05867075.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260757950|ref|ZP_05870298.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260883748|ref|ZP_05895362.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|261213979|ref|ZP_05928260.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261314280|ref|ZP_05953477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261317626|ref|ZP_05956823.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261752296|ref|ZP_05996005.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261754953|ref|ZP_05998662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|261758181|ref|ZP_06001890.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|265988661|ref|ZP_06101218.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|265991076|ref|ZP_06103633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|265994911|ref|ZP_06107468.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|297248317|ref|ZP_06932035.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Brucella abortus bv. 5 str. B3196] gi|17982950|gb|AAL52171.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|23347810|gb|AAN29914.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161335756|gb|ABX62061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|163673983|gb|ABY38094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|225617474|gb|EEH14519.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo] gi|225640861|gb|ACO00775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC 23457] gi|255999573|gb|ACU47972.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915] gi|260154014|gb|EEW89106.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str. 16M] gi|260155986|gb|EEW91066.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|260668268|gb|EEX55208.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4 str. 292] gi|260674835|gb|EEX61656.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6 str. 870] gi|260873276|gb|EEX80345.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9 str. C68] gi|260915586|gb|EEX82447.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3 str. Tulya] gi|261296849|gb|EEY00346.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis B2/94] gi|261303306|gb|EEY06803.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M163/99/10] gi|261738165|gb|EEY26161.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99] gi|261742049|gb|EEY29975.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str. 513] gi|261744706|gb|EEY32632.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|262766024|gb|EEZ11813.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3 str. Ether] gi|263001860|gb|EEZ14435.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1 str. Rev.1] gi|263094156|gb|EEZ18078.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2 str. 63/9] gi|264660858|gb|EEZ31119.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis M292/94/1] gi|297175486|gb|EFH34833.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Brucella abortus bv. 5 str. B3196] gi|326409012|gb|ADZ66077.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28] gi|326538722|gb|ADZ86937.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M5-90] Length = 396 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|229113688|ref|ZP_04243125.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] gi|228669754|gb|EEL25159.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-3] Length = 425 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 32/341 (9%) Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++ +A +ML SN A + L++ N+G ++ + D + AS+TK+M+ Sbjct: 1 MLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMS 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 Y+V + + K I +S+ A + SN + G + T+ + + + SAN Sbjct: 61 EYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163 +A+ E++ E FV+ MN+ +K LGL F+N+ G+ + Sbjct: 121 GATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPDEEN 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGAD 214 +ARD+AIL+ + D+P+ + +I +G KYP N NW + + G D Sbjct: 181 KMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYDGVD 240 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G+KTG T +G + + I+V++ R + L GF N ++ Sbjct: 241 GLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQM-- 298 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 Y + + V N ++ Q + + K +KD Sbjct: 299 YKKDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKD 339 >gi|254744208|ref|ZP_05201889.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Kruger B] Length = 438 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GXXADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 342 >gi|306841800|ref|ZP_07474484.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] gi|306288114|gb|EFM59506.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2] Length = 370 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 137/273 (50%), Gaps = 2/273 (0%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 + + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA+ Sbjct: 5 SWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASK 64 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G+ + Sbjct: 65 VRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKS 124 Query: 150 THFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208 T F N G+ + TTARDMA+L ++ DFP+ F + +G+ Y N + Sbjct: 125 TIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMY 184 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ F Sbjct: 185 RYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTR-FGGVD 243 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 + K + Q + + P++ ++ + Sbjct: 244 NGKAAPLVAMAKPQAVTAKQKPDVVADLIDDTQ 276 >gi|256061084|ref|ZP_05451239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261325086|ref|ZP_05964283.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261301066|gb|EEY04563.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] Length = 396 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|283795540|ref|ZP_06344693.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291077207|gb|EFE14571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 404 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 165/379 (43%), Gaps = 46/379 (12%) Query: 1 MRQFLVIIAMA-----------------MLSNIFPFLSIA---ETNKLPYYTLLDTNTGH 40 M++ L +I A + + + S A + P L++ +TG Sbjct: 1 MKRILSVICAALLLAAVLCQSAFAQKPEIGAEVSAPASAALEGPQIQAPCGILMEASTGT 60 Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 V+ E D NPAS+TK+MT + F LK K LT + S +A S ++G Sbjct: 61 VLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGE 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ +F + G+ Sbjct: 121 VQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTD 180 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFL 211 H +ARD+A+++ + T +P+ +Y I I K NTN + Sbjct: 181 SASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFGLSNTNKLLKMAT 240 Query: 212 G--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--- 266 G+KTG T + + + A+A + LIAVIL A D R + +LL+ G+ N Sbjct: 241 NFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLLNYGYANCRL 300 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN----------ISEEVCTTQKEIINYNTQMKEAKDK 316 TD + + I + + + + VP S E + ++ + T++K + Sbjct: 301 YTD-EDVGEIPEVQILRGVQDTVPVRIDKPFSYLGTSGEDFSGIEKEWIFETELKAPV-Q 358 Query: 317 ESHFIDFEKITLLKNKITK 335 E + L +I + Sbjct: 359 EGEIVGKLVYRLNGKEIGQ 377 >gi|218233929|ref|YP_002364864.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus B4264] gi|218161886|gb|ACK61878.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus B4264] Length = 438 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|229165003|ref|ZP_04292801.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] gi|228618455|gb|EEK75482.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH621] Length = 443 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 144/348 (41%), Gaps = 36/348 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + + +F S A + L++ N+G ++ + D + Sbjct: 12 KRFIALVTVLTLAFGVFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I + +K N NW + Sbjct: 192 GTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +K Y + + V N ++ Q + K +KD Sbjct: 312 EMKKM--YEKGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKD 357 >gi|295116100|emb|CBL36947.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SM4/1] Length = 404 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 46/379 (12%) Query: 1 MRQFLVIIAMA-----------------MLSNIFPFLSIA---ETNKLPYYTLLDTNTGH 40 M++ L +I A + + + S A + P L++ +TG Sbjct: 1 MKRILSVICAALLLAAVLCQSAFAQKPEIGAEVSAPASAALEGPQIQAPCGILMEASTGT 60 Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 V+ E D NPAS+TK+MT + F LK K LT + S +A S ++G Sbjct: 61 VLYEKNADEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGE 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T++ +K +++ S ND +VA+AE + E FVQ MN +K LG+ +F + G+ Sbjct: 121 VQTVETLIKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTD 180 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFL 211 H +ARD+A+++ + T +P+ +Y I I K NTN + Sbjct: 181 SASHAMSARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFGLSNTNKLLKMAT 240 Query: 212 G--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--- 266 G+KTG T + + + A+A + LIAVIL A D R + +LL+ G+ N Sbjct: 241 NFEVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLLNYGYANCRL 300 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN----------ISEEVCTTQKEIINYNTQMKEAKDK 316 TD + + I + + + VP S E + ++ + T++K + Sbjct: 301 YTD-EDVGEIPEVQILGGVQDTVPVRIDKPFSYLGTSGEDFSGIEKEWIFETELKAPV-Q 358 Query: 317 ESHFIDFEKITLLKNKITK 335 E + L +I + Sbjct: 359 EGEIVGKLVYRLNGKEIGQ 377 >gi|163938022|ref|YP_001642906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163860219|gb|ABY41278.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 435 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 34/336 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + + +F S A + L++ N+G ++ + D + Sbjct: 4 KRFIALVTVLTLAFGMFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+ Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I + +K N NW + Sbjct: 184 GTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 +K ++ + E + V T++ + Sbjct: 304 EMKKMYEKGSSVKGKETVRVENAKDKDVVVQTKQAV 339 >gi|239825594|ref|YP_002948218.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239805887|gb|ACS22952.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 450 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 78/350 (22%), Positives = 137/350 (39%), Gaps = 32/350 (9%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + S + L+D NTG ++ + D AS+TK+MT Y++ +KEK+ Sbjct: 26 VAKAASDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAIKEKRVK 85 Query: 76 LTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 T S + SN +K T+ + + + SAN VAIAE + +E Sbjct: 86 WDQQYTPSDYVYRLSQDRSLSNVPLRKDEKYTVRELYEAMAIYSANAATVAIAEIVGGSE 145 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRI 177 + FV+ MN +K LGL F+N+ G+ + +AR +A L++ + Sbjct: 146 QNFVKMMNEKAKQLGLKGYKFVNSTGLSNEDLKGFHPEGTNEREENVMSARSVATLAYHL 205 Query: 178 KTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNI 228 ++P+ + + K N NW + + G DG+KTG+T +G+ Sbjct: 206 LKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVREYEGVDGLKTGYTEFAGYCF 265 Query: 229 VASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 +A + I V++ A R + + LL GF N + +K + + Sbjct: 266 TGTAERDGVRFITVVMNAKSNGKSTIEARFEQTEKLLHYGFSNYSIKKLYPKGYQLKGKS 325 Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 L T K +E + + D +K+T + Sbjct: 326 TLPVVKGKEKSVAIVTDKPFFLVVKNGEEKNYRPVYVFDQKKLTDKGELV 375 >gi|32490923|ref|NP_871177.1| hypothetical protein WGLp174 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166129|dbj|BAC24320.1| dacA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 410 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 141/282 (50%), Gaps = 16/282 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52 ++FL I + +F + +E Y L+D +G V+AE D Sbjct: 17 KKFLEIFKFITIIYLFIGKTYSEQYNVEIKPPKINAESYILIDYYSGQVLAEMNADSKRL 76 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDN 106 PASLTK+MT+Y++ ++K + + ISK + S+ K G +++ + Sbjct: 77 PASLTKMMTSYIIGMYIKSGHIKSSDLVKISKESWMLGNPSLKGSSSMFLKPGDLVSISD 136 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + +I++S ND VAIA + ++ FV+ MNN +K L L THF N HG+ G +T+ Sbjct: 137 LSRGIILQSGNDACVAIANYISGNQESFVELMNNYAKKLKLKNTHFKNVHGLDNAGQFTS 196 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 ARDM+I+ + D + ++ K + N N + L DG+KTG T +G Sbjct: 197 ARDMSIIGTYLIKDVHEEYIKYKEKEFTYNNIRQLNRNNLLWDKTLNVDGIKTGHTKLAG 256 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +N+VASAI + LI+VILG N R+ S SLL+ G + Sbjct: 257 YNLVASAINENMRLISVILGGRSINERDNGSKSLLNWGLRSF 298 >gi|330820568|ref|YP_004349430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli BSR3] gi|327372563|gb|AEA63918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli BSR3] Length = 306 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 9/273 (3%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + + ++D +G V+ E+ D PASLTKLMTAYVV L+ L Sbjct: 34 AVGADSAIHAAAWLVVDGESGRVLGEHDADAERQPASLTKLMTAYVVLDALRRGALRLDE 93 Query: 79 PITIS-KNASE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + + + ++ + G ++T+++ + LIV SAND A+ +A + + F Sbjct: 94 TLRVDGADLADLGQDEARMYLVAGRSVTVEDLVDGLIVASANDAAMVLARRVGGSRAGFE 153 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 Q MN+T++ LG++ TH+ G+ G+++TARD+A L+ R+ DFP Y Y + Sbjct: 154 QRMNDTARRLGMTHTHYTTPSGITTPGNHSTARDLATLARRLTADFPVYYRYSARQQFAY 213 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDR 249 G N NW +G+ G DG+KTG T A+G+ IVA+A + + + AV+LGA Sbjct: 214 GGFHKRNKNWLLGSAPGVDGLKTGHTQAAGYCIVATARRRQAAPPMARRVFAVVLGAPSA 273 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 + R LL + D + ++ + Sbjct: 274 SARIDAGRRLLDEAYAQSRDLPGKDGVVTQIVR 306 >gi|57339684|gb|AAW49829.1| hypothetical protein FTT1029 [synthetic construct] Length = 479 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 130/295 (44%), Gaps = 52/295 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 79 DAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 138 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 139 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 198 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 199 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 258 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 259 DRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 318 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + Sbjct: 319 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN 373 >gi|297170270|gb|ADI21307.1| D-alanyl-D-alanine carboxypeptidase [uncultured gamma proteobacterium HF0010_09F21] Length = 381 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 7/280 (2%) Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+QF +++ ++ + + Y L + T VIA + ASLTKL Sbjct: 1 MKQFSFLLLISLSINLFSSPIPKPPDLGVGSYILYEPTTDTVIASFNENESVEVASLTKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT+YVV +K+ + TIS A + P S ++G+ + + + +K +++ S ND Sbjct: 61 MTSYVVADQIKQGYISMEDEPTISVKAWQTPGSQMFIREGTKVKVSDLVKGMVIISGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +VA+AE + +E+ FV M+ + +LGL + F N+ G+ + ++A D+A L+ I Sbjct: 121 SVALAEHIAGSEENFVYLMDQYAVDLGLRNSDFNNSSGLPDPNNVSSALDLAKLTGAIIR 180 Query: 180 DFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 DFP + ++ K PN N + DG+KTG+T A+G +V S+ + Sbjct: 181 DFPDHYQIYKEKEFSYSAPGEYVAPQPNRNRLLHLDDMFDGVKTGYTRAAGHCLVGSSTR 240 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 D LIAV+LG+ + R +L+ G+ R+ ++ Sbjct: 241 DDMRLIAVVLGS-GIDKRFADVRALVGYGYQYFKTREIVS 279 >gi|154248244|ref|YP_001419202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] gi|154162329|gb|ABS69545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter autotrophicus Py2] Length = 399 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 123/250 (49%), Gaps = 5/250 (2%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 + P L+D TG ++ E D P +L K+MTA VVFS LK K L TP T+S N Sbjct: 31 TQAPSAILVDYETGTILFEKDADRRIAPGTLAKVMTADVVFSQLKAGKIALDTPFTVSVN 90 Query: 86 ASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A + + L ++V S ND A+A+AE + TE +F Q M Sbjct: 91 AWRRGGGPSGGAAMFAEVNKPAPVGELLAGMLVVSGNDAAIALAEGVGGTETEFSQQMTE 150 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K +G++ + F NA G G ++TARD+++L+ + +P Y F +E K Sbjct: 151 RAKAIGMANSEFRNATGFADPGQFSTARDLSVLAQHVIRTYPDYYPVFARTSIEWSRIKQ 210 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADG++ G+ G++ + SA+Q Q LI V+L A R + + LL Sbjct: 211 RNRNVLLDAGIGADGLQIGWVKDVGYHALGSAVQNGQRLIVVVLAAKTEKERLEEAKKLL 270 Query: 261 SMGFYNKTDR 270 GF + R Sbjct: 271 EWGFQSFRQR 280 >gi|319783486|ref|YP_004142962.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169374|gb|ADV12912.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 434 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 5/260 (1%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P + K ++D TG V+ D P PAS+ KLMT VVF+ +K + L Sbjct: 69 APAGAQLFETKAAQAFMIDAETGTVLFSKEADKPIPPASMAKLMTMEVVFNAIKSGRLKL 128 Query: 77 TTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 +S+NA S K S++ L++ ++ + V++AND + IAE + +E Sbjct: 129 DDTFVVSENAWRKGGAPSGTSTMFAKLKSSIRLEDLIQGVTVQAANDGCIVIAEGMSGSE 188 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F M ++ +GL + F+N+ G+ G TT R++A L+ + D+P + YF K Sbjct: 189 DNFAVQMTERARQIGLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYFAQK 248 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 N N + +GADG+ G + A+GF IV S +IA + G Sbjct: 249 DFTWNKISQRNRNPLLAMDIGADGLAVGASEAAGFGIVGSLSHNGTRVIAAMSGLASDKE 308 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R + + LL G + + Sbjct: 309 RAEEARKLLDWGVRSFEKTE 328 >gi|206972675|ref|ZP_03233615.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH1134] gi|206732395|gb|EDZ49577.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH1134] Length = 438 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|52145200|ref|YP_081628.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] gi|51978669|gb|AAU20219.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus cereus E33L] Length = 435 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHDAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 304 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 349 >gi|49183048|ref|YP_026300.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|165873233|ref|ZP_02217844.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0488] gi|167635043|ref|ZP_02393360.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0442] gi|167641737|ref|ZP_02399980.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0193] gi|170688916|ref|ZP_02880118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0465] gi|170707518|ref|ZP_02897971.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0389] gi|177655678|ref|ZP_02937003.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0174] gi|190569327|ref|ZP_03022219.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis Tsiankovskii-I] gi|196036362|ref|ZP_03103759.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W] gi|218901215|ref|YP_002449049.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH820] gi|227812687|ref|YP_002812696.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CDC 684] gi|254686602|ref|ZP_05150461.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CNEVA-9066] gi|254724155|ref|ZP_05185940.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A1055] gi|254737010|ref|ZP_05194715.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Western North America USA6153] gi|254755970|ref|ZP_05208002.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Vollum] gi|254761669|ref|ZP_05213687.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Australia 94] gi|49176975|gb|AAT52351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Sterne] gi|164711031|gb|EDR16597.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0488] gi|167510291|gb|EDR85694.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0193] gi|167529517|gb|EDR92267.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0442] gi|170127514|gb|EDS96388.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0389] gi|170667140|gb|EDT17901.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0465] gi|172080018|gb|EDT65118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0174] gi|190559549|gb|EDV13542.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis Tsiankovskii-I] gi|195990992|gb|EDX54963.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W] gi|218539949|gb|ACK92347.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH820] gi|227002528|gb|ACP12271.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. CDC 684] Length = 438 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 342 >gi|319780264|ref|YP_004139740.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166152|gb|ADV09690.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 295 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 141/262 (53%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 L++ + ++D TG + E PASLTK+MT Y++F L+ + Sbjct: 33 SVLAVPAPAQKYAAIVVDARTGKQLFEVSSTAQRYPASLTKMMTLYLLFEALESGRVSKQ 92 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T I +S +A+ PP+ F++G ++ +D+A++ ++VKSAND+AVA+ E L +E +F Sbjct: 93 TQIPVSDHAASQPPTKMRFRRGESIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAM 152 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 M + ++ LG+++T F NA G+ G TTARDMA+L + FPQ HYF +G Sbjct: 153 MTSKARQLGMTSTTFRNASGLPDDGQMTTARDMAVLGMALHQRFPQQFHYFSESDFMFRG 212 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N +G G DG+KTG+ ASGFNIV S ++LI V++GA RN Sbjct: 213 RLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRNLIVVVMGADSARQRNDHVE 272 Query: 258 SLLSMGFYNKTDRKKINYIIKD 279 +L+ TD K + + Sbjct: 273 ALIQRSLSPTTDGAKTRLMFAE 294 >gi|254455195|ref|ZP_05068630.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus 238] gi|198263605|gb|EDY87877.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus 238] Length = 399 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 10/297 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + +++ P + + +LD +TG V+ D P PAS+ KLMT Y+ Sbjct: 9 FALFALFIASAAPVGAQTFDTRASAAYVLDHSTGVVLLAKNADDPLPPASMLKLMTLYMA 68 Query: 66 FSFLKEKK-----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 F + + + +S++ +Y S + +D+ L+ +IV S ND + Sbjct: 69 FEAINPLNGQDPFLTVDDVLPVSQHCMDYTGSTMFLDTTDRVRVDDLLRGIIVLSGNDAS 128 Query: 121 VAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 IAE L TE F Q M ++ LG+ + F N++G G + RD+ +L+ R+ Sbjct: 129 CVIAEGLSRNGTEAGFAQQMTVRAQQLGMLNSSFANSNGWPAAGQRMSMRDLGLLANRLI 188 Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 TD+P + F + + G+ N N + +GADG+KTG T +G+ +V SA QG Sbjct: 189 TDYPTFYPLFAEQEFDYDGEHPANTRNRNPLLSLGIGADGLKTGHTIEAGYGLVGSAKQG 248 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 D+ +I V+ G R + + +++ F T R + + E P + Sbjct: 249 DRRIIFVVTGHETVQERAEEAERIVNWAFRQFTQRDIARSGTRIAQAEVWRGEQPLV 305 >gi|258510666|ref|YP_003184100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477392|gb|ACV57711.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 15/293 (5%) Query: 14 SNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 S P++ + + P ++D +TG V+ + P PAS+TK+MTA + Sbjct: 52 SGPIPYVVGEDASSWPSIVSQAAVVMDMDTGAVVYAKHSTAPHYPASITKIMTALLALRL 111 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 LT +T S +A PP + G TL + L L++ SAND AV IAE Sbjct: 112 -----GHLTDVLTASTDAVRQPPDKLYMRAGEKATLKDLLYGLLIDSANDAAVEIAERYG 166 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 + F MN ++ LG + THF+N G+ H TTA DMA+++ P++ Sbjct: 167 GSVAHFADMMNAEARALGATHTHFVNPSGLPDPRHVTTAYDMAVIARAAMQI-PEFRTIV 225 Query: 189 QIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + + KG + N N + T+ GA G+KTGFT + +V +A +G + +AV++ Sbjct: 226 DTRSFDWKGTAWQATLTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLM 285 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 + + +LL+ F + ++ + + + E P ++ E Sbjct: 286 DCPTDAEIRQDATNLLNYAFLHDETQRILPAGYRAGFVLARDGEDPVVTSEPV 338 >gi|196041942|ref|ZP_03109229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus NVH0597-99] gi|196027197|gb|EDX65817.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus NVH0597-99] Length = 438 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 342 >gi|56697577|ref|YP_167946.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3] gi|56679314|gb|AAV95980.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3] Length = 388 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 134/270 (49%), Gaps = 7/270 (2%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 ++A+ M P + +LD +TG V+ D PAS++KLMT YV Sbjct: 8 ALLALGMALTALPGFAY--DTSARAAYVLDQSTGTVLLTKNADEALPPASMSKLMTLYVT 65 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F L++ + L + +S++A Y S + +++ L+ +IV S ND IAE Sbjct: 66 FEALRDGRLTLDERLPVSQHAMSYGGSTMFLNTTDRVRVEDLLRGIIVLSGNDACAVIAE 125 Query: 126 SLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 +L TE F + M ++ +G++ + F N++G GH + D+A+L+ R+ TDFP+ Sbjct: 126 ALSPDGTEAGFARFMTKRAQQMGMTRSTFANSNGWPAAGHLMSVHDLAVLANRLITDFPE 185 Query: 184 YMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Y F G+ N N + +GADG+KTG T +G+ +V SA QGD+ +I Sbjct: 186 YYPLFAETEFAFDGRAPSNVRNRNPLLKLDIGADGLKTGHTAEAGYGLVGSARQGDRRVI 245 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 V+ G R + + ++++ F + + Sbjct: 246 FVLTGLESEARRAEEAEAIVNWSFRHFATK 275 >gi|228918964|ref|ZP_04082345.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840679|gb|EEM85939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 443 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 357 >gi|159043475|ref|YP_001532269.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae DFL 12] gi|157911235|gb|ABV92668.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae DFL 12] Length = 393 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 125/257 (48%), Gaps = 4/257 (1%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AML 76 P A + ++D TG V+ E D P PAS++KLMT Y++F L++ L Sbjct: 19 PAAQAAFETRAEAAYVVDVTTGTVLLEKNADVPLPPASMSKLMTLYMLFEALEKNPAVTL 78 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 T +S A S + T ++ +K +IV+S ND V +AE L TE+ F + Sbjct: 79 DTTFRVSARAMAKGGSTMFLTERDRPTAEDLIKGIIVQSGNDATVVVAEGLAGTEEAFSR 138 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M +GL+ + F N+ G H + RD+ IL+ RI D+P+Y YF + Sbjct: 139 LMTEKGAAIGLTQSTFTNSSGWPDPQHRMSMRDLGILTQRIIEDYPEYYGYFAMSEWGFD 198 Query: 197 GK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G+ N N + +GADG+KTG T +G+ +V SA QG + +I VI G R Sbjct: 199 GRAPQNRFNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAQQGARRIIFVITGLETDRARA 258 Query: 254 KVSASLLSMGFYNKTDR 270 + S ++S F ++ Sbjct: 259 EESERIVSWAFRQFVEK 275 >gi|228925267|ref|ZP_04088365.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931516|ref|ZP_04094424.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119676|ref|ZP_04248939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228663767|gb|EEL19344.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 95/8201] gi|228828134|gb|EEM73860.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834381|gb|EEM79920.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 443 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 347 >gi|62289915|ref|YP_221708.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82699842|ref|YP_414416.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar Abortus 2308] gi|189024158|ref|YP_001934926.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|237815417|ref|ZP_04594415.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|254697357|ref|ZP_05159185.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260545336|ref|ZP_05821077.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260761773|ref|ZP_05874116.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] gi|62196047|gb|AAX74347.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str. 9-941] gi|82615943|emb|CAJ10966.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella melitensis biovar Abortus 2308] gi|189019730|gb|ACD72452.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus S19] gi|237790254|gb|EEP64464.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A] gi|260096743|gb|EEW80618.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038] gi|260672205|gb|EEX59026.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2 str. 86/8/59] Length = 396 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFTGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|294852342|ref|ZP_06793015.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] gi|294820931|gb|EFG37930.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026] Length = 410 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ ++ PASL K+MT Sbjct: 23 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGQDDASAQHAPASLAKMMTL 77 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 78 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 138 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 198 PEEYALFSQCSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVG 257 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + P++ ++ + Sbjct: 258 VVLGAGSAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLIDDTQ 316 >gi|49478184|ref|YP_034369.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329740|gb|AAT60386.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 438 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 342 >gi|228912752|ref|ZP_04076401.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846879|gb|EEM91882.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 443 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 347 >gi|27380267|ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA 110] gi|27353431|dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110] Length = 611 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 144/240 (60%), Gaps = 1/240 (0%) Query: 22 IAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 ++E++ + ++D N+G V+ PD +PASLTK+MT Y++F L+ K L T + Sbjct: 51 VSESSSPKFASIIVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEM 110 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 +S++A++ P+ + G T+ +++A+K L+ +SAND AV IAE++ E F Q M Sbjct: 111 PVSQHAADQDPTKLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTR 170 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +++LG+S T + NA+G+ TTARD A L I+ FP+Y YF +G+ Sbjct: 171 KARSLGMSKTVYRNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSI 230 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N +G+ G DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +LL Sbjct: 231 RNHNHLLGSVEGVDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLL 290 >gi|325123015|gb|ADY82538.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 440 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 21/299 (7%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F + A L NI P E+ + +T++DT +G +IAE+ PASLTK+M AY Sbjct: 15 FCTTLTNAALLNIAP-----ESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAY 69 Query: 64 VVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + +K K IT + + ++ S K G +++D L LIV SAND AV Sbjct: 70 IALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAV 129 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE + +FVQ MN ++ LG+ THF N G+ H+TTA D+++LS + Sbjct: 130 TLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLLSQALIKQT 189 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234 P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + Sbjct: 190 PEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSSDL 249 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + L+ ++LG R +++ L+++ + D I +Q L E+P + Sbjct: 250 TQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVII-------PEQKLIAELPVVK 301 >gi|42781590|ref|NP_978837.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|42737513|gb|AAS41445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] Length = 434 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 37/349 (10%) Query: 2 RQFLVIIAMAMLSN---IFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+VI+ + L + + AET + L++ N+G ++ E D Sbjct: 4 KKFIVIVTVLTLFCSIVVTSGSASAETVPVLDVEAGSAILVEANSGKILYEKNADESLAI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V +++ K + IS+ A + SN + + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLENSGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 124 AMAIYSANGATIALVEEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPE 183 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I KG KYP N N + Sbjct: 184 GTTPDEKNKMSARDCAILAQRLVQDFPKMLDTAKIPKKTFQKGGKYPIDMVNFNMMLKGL 243 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 244 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 303 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + Y + + + V N ++ Q + K KD Sbjct: 304 FEVKNI--YGKGSVVKGHETVRVANAKDKDVIVQTKQAISLPMPKGNKD 350 >gi|228943820|ref|ZP_04106207.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815844|gb|EEM62078.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 443 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 347 >gi|323704241|ref|ZP_08115820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536307|gb|EGB26079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 148/335 (44%), Gaps = 27/335 (8%) Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ + II + L N P + E P L+D TG V+ + + PAS Sbjct: 1 MKKIVSIITVIIFLINFIPKVYGMENPPQIVGPTAVLMDFTTGQVLYDKNMNQRMYPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++TA + K L +T++ + ++ G +TL+ L ++++SA Sbjct: 61 TKILTAIIAIE-----KGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESA 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+A+A+ + + + F MN +K +G +HF+N +G+ HY+T DMA+++ Sbjct: 116 NDAAIAVADHIGGSIQGFANLMNEKAKEIGAKDSHFVNPNGLPNTEHYSTPYDMALIARY 175 Query: 177 IKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVG----TFLGADGMKTGFTCASG 225 + +I K + +N + + GADG+KTG+T A+ Sbjct: 176 AMR-NATFRKIVSTIHYQIPPTNKFDKPRDLWISNRLIKPTSFHYDGADGVKTGYTIAAN 234 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQ 283 V SA + LI+VI+G N + LL+ GF N + N I+ Sbjct: 235 QVFVGSATRNGHRLISVIMGDEGTNI-WTDTIKLLNYGFNNFDLVNPLEQNSIVTYVDIG 293 Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKD 315 + ++P I+++ + + + + + K+ Sbjct: 294 KVKFKLPLIAKDSFYYVVPKGQENSIKSSISVDKN 328 >gi|260459469|ref|ZP_05807724.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] gi|259035023|gb|EEW36279.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium opportunistum WSM2075] Length = 387 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 5/259 (1%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + K ++D +TG V+ D P PAS+ KLMT VVF+ +K + L Sbjct: 23 PAHAQLFETKAAQAFMIDADTGTVLFSKDADKPIQPASMAKLMTMEVVFNAIKSGRLKLD 82 Query: 78 TPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 +S+NA S K S++ L++ ++ + V++AND + IAE + +E Sbjct: 83 DTFVVSENAWRKGGAPSGTSTMFAKLKSSVRLEDLIQGVTVQAANDGCIVIAEGMAGSED 142 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 F M ++ +GL + F+N+ G+ G T+ R++ L+ + ++P + Y+ +K Sbjct: 143 NFAAQMTERARQIGLKTSTFVNSTGLPADGQQTSVRELTQLALHLWRNYPDFYRYYSLKD 202 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 N N + +GADG+ G + ASGF IV S +IA + G + R Sbjct: 203 FTWNKISQRNRNPLLAMDIGADGLAVGASEASGFGIVGSVSHNGTRVIAALSGLANDKER 262 Query: 253 NKVSASLLSMGFYNKTDRK 271 + + LL G + + Sbjct: 263 AEEARKLLDWGVRSFEKTE 281 >gi|306843866|ref|ZP_07476461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] gi|306275621|gb|EFM57345.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1] Length = 396 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 122/251 (48%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAVAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|304391580|ref|ZP_07373522.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp. R2A130] gi|303295809|gb|EFL90167.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp. R2A130] Length = 480 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 154/329 (46%), Gaps = 8/329 (2%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 MR + L F + + ++D TG VI + Sbjct: 13 MRLVFTLFLSTFLVLSFQLMMTGDAEAKRKKKGNPRYAAYVIDAKTGKVIFSRNGNARRY 72 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PASLTK+MT Y+VF +K + T + +SK S PS + G ++++D A+K LI Sbjct: 73 PASLTKMMTLYLVFEDMKAGRINGKTRLVMSKKGSLQQPSKIGLRAGQSISMDQAVKSLI 132 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 KSAND+A AI L +E +F + M ++ LG+S T F NA+G+ G TTA DMA Sbjct: 133 TKSANDVATAIGGQLSGSEVEFAKRMTRKARQLGMSRTTFKNANGLTARGQVTTAADMAK 192 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L ++ FP+ F + ++ ++Y N N +G G DG+KTG+T ASGFN+V+S Sbjct: 193 LGMALREHFPRKYKLFSTRVFKLGKRRYGNHNKLLGRVRGVDGIKTGYTRASGFNLVSSV 252 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 G +S++AV++G +RN +L+ + K+ + + + I Sbjct: 253 QTGGRSIVAVVMGGRSGRSRNAHMQTLIKRHLRKASRGKQRRVVARATGSRGSVATKKVI 312 Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFI 321 + T + + + + K S I Sbjct: 313 VAKAVTPTPSPLAARSSARSPQQKISSRI 341 >gi|255021081|ref|ZP_05293134.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254969495|gb|EET27004.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 299 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 125/275 (45%), Gaps = 13/275 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 L ++A AML + + Y L++ TG ++A + P+ AS+T Sbjct: 8 LLSLVACAMLLHSTSARAQNIVQAGLPVIDARAYILMNAETGQILATKHAYRPYAIASIT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMT Y++F L+ L A S + G T+ + + V S N Sbjct: 68 KLMTLYLLFQDLQSGHLSLQQQFKPCPAALHTGGSTMDLRAGVPFTVAQMILGMTVPSGN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D AV A + + FV+ MN T++ LG+ +T F + G+ + + D+A+L+ I Sbjct: 128 DAAVEAAHLVSGSVPAFVRKMNRTARQLGMLSTQFYDPDGLPHPNNTASPYDIALLTRAI 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 T FPQYM +FQ + G YPN N VG GMK+G+T A+G +VA+ Q Sbjct: 188 MTQFPQYMPFFQHEHFTYGGITYPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQDGV 247 Query: 238 SLIAVILGALDRNTRNK-------VSASLLSMGFY 265 LIAV+LG + + S LL GF Sbjct: 248 KLIAVVLGVPSFHDEARGFWKASWQSLKLLDWGFA 282 >gi|229053860|ref|ZP_04195297.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] gi|228721470|gb|EEL72987.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH603] Length = 418 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 29/334 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + SN A + L++ N+G ++ + D + AS+TK+M+ Y+V Sbjct: 1 MLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEA 60 Query: 69 LKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + +S+ A SN + G + T+ + + + SAN +A+A Sbjct: 61 IAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDM 170 E++ E FV+ MN+ SK GL F+N+ G+ + +ARD+ Sbjct: 121 EAVAGKEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDV 180 Query: 171 AILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFP+ + +I + + PN NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGST 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + I+V++ R + L GF + +K Y Sbjct: 241 PEAGDCFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFASFEMKKM--YEKGSSV 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + V N ++ Q + K +KD Sbjct: 299 KGKETVRVENAKDKDVAAQTKQAVSLPVPKGSKD 332 >gi|229131021|ref|ZP_04259937.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] gi|228652433|gb|EEL08354.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST196] Length = 418 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 29/334 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + SN A + L++ N+G ++ + D + AS+TK+M+ Y+V Sbjct: 1 MLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEA 60 Query: 69 LKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + +S+ A SN + G + T+ + + + SAN +A+A Sbjct: 61 IAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDM 170 E++ E FV+ MN+ SK GL F+N+ G+ + +ARD+ Sbjct: 121 EAVAGKEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDV 180 Query: 171 AILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFP+ + +I + + PN NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGST 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + I+V++ R + L GF + +K Y Sbjct: 241 PEAGDCFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFASFEMKKM--YEKGSSV 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + V N ++ Q + K +KD Sbjct: 299 KGRETVRVENAKDKDVAVQTKQAVSLPVPKGSKD 332 >gi|229100800|ref|ZP_04231618.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] gi|228682607|gb|EEL36666.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock3-28] Length = 430 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 35/344 (10%) Query: 5 LVIIAMAMLSNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 LV + S + P+ + + + L++ N+G ++ + D + AS+TK Sbjct: 3 LVTVLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M+ Y+V + + K I +S+ A + SN + G + T+ + + + Sbjct: 63 MMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIY 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQ 160 SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+ Sbjct: 123 SANGATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPD 182 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFL 211 + +ARD+AIL+ + D+P+ + +I +G KYP N NW + + Sbjct: 183 EENKMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYD 242 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG T +G + + I+V++ R + L GF N ++ Sbjct: 243 GVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQ 302 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 Y + + V N ++ Q + + K +KD Sbjct: 303 M--YKKDSSVKGQETVRVGNAKDKDVAVQTKQVVSLPVPKGSKD 344 >gi|148553407|ref|YP_001260989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] gi|148498597|gb|ABQ66851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii RW1] Length = 392 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 140/348 (40%), Gaps = 26/348 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + L+ M + + P L D ++G ++ PD PAS+ K+MT Sbjct: 5 KIALLSAVFLMAAIPAEAAAPPFDTPAPVAFLKDLSSGAILYAKNPDLRMPPASMAKMMT 64 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVKSA 116 YV F +++ + L T+ + S G +++ N L ++ S Sbjct: 65 VYVAFDLIQKGELKLDAMATVRPETWKQWHGPAAGSTMFLSPGEQVSVANLLFGIVTLSG 124 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSW 175 ND V +AE + TE+ FV MN +K +GL+ +HF ++G G Y TARD+A L+ Sbjct: 125 NDACVVLAEHISGTEQAFVALMNRRAKEMGLTNSHFGTSNGWPDGGATYVTARDLATLAE 184 Query: 176 RIKTDFPQYMH-YFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + + P+ ++ N + +G GADG+KTG T +GF Sbjct: 185 KTIEEHPKLYKTFYSRPSFTWGKTMGGGQDITQANRDPLLGRVAGADGLKTGHTEEAGFG 244 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLS 286 SA Q + L+ V+ G N R S S ++ GF + + + K + L Sbjct: 245 FTGSAEQNGRRLVMVLSGLTSFNQRIDQSVSFMNWGFRSWQSKPVVPKGRKVQTAEVQLG 304 Query: 287 NE-----------VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323 +E V + + + K + Y +K K H D Sbjct: 305 DEREVGLVAPKDLVVTVPAGLGSDLKTKVVYQGPIKAPFKKGDHIADL 352 >gi|288554616|ref|YP_003426551.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] gi|288545776|gb|ADC49659.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] Length = 444 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 145/359 (40%), Gaps = 29/359 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 F+ + MA L A L++ +G ++ + D AS+TK+M+ Y Sbjct: 13 FMSFVLMATLIVQPTTADAALDLDAESAILVEAESGKILYQKNIDAVLPLASMTKMMSEY 72 Query: 64 VVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 ++ + E + + IS + SN ++ T T+ + + + + SAN Sbjct: 73 LILEAISEGRISWDQQVPISDWVRTLSLQTALSNVPLRQDETYTVRDLYESVAIYSANAS 132 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYT 165 +A+AE + +E +FVQ MN + LGL +F+N+ G+ + Sbjct: 133 TIALAELISGSETQFVQLMNEKGEELGLEDFNFVNSSGLNNRDLQGNHPEGTGAEAENEM 192 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGT------FLGAD 214 +AR A L++ + D+P+ + I + + N NW + T + G D Sbjct: 193 SARATAKLAYALLRDYPEVLETASIPMKDFQAGPGEVIPMENWNWMLPTIRPQHDYEGID 252 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G+KTGFT A+G +A + LI+V++ R+ R + LL GF N + + + Sbjct: 253 GLKTGFTSAAGNTFTGTAERDGMRLISVVMRTESRDARFNETRKLLDFGFNNFSTVELFD 312 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 ++ L E ++ + + + + +D EK+ + Sbjct: 313 EGHVVEGEETLPVAAGKEREVAISSAEALSAVVRNGQNDQYSVELGLDQEKLNEDGELV 371 >gi|306840479|ref|ZP_07473238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] gi|306289494|gb|EFM60712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2] Length = 396 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 122/251 (48%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|256061158|ref|ZP_05451311.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33] gi|261325163|ref|ZP_05964360.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] gi|261301143|gb|EEY04640.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33] Length = 410 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F +A + + ++A T + + D ++G ++ + PASL K+MT Sbjct: 23 RFFASVAFG-TAVLCASGAMAST----SWVVFDADSGRMLGRDDASAQHAPASLAKMMTL 77 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 Y+ F LK + + ISKNA+ K G T++ +A+ +I+ SAND A Sbjct: 78 YLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATV 137 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 + E L +E F + M ++ +G+ +T F N G+ + TTARDMA+L ++ DF Sbjct: 138 MGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDF 197 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 P+ F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ Sbjct: 198 PEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVG 257 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 V+LGA R+ A LL+ F + K + Q + P++ ++ + Sbjct: 258 VVLGAGSAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLIDDTQ 316 >gi|23501950|ref|NP_698077.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161619022|ref|YP_001592909.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|254704362|ref|ZP_05166190.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|260566392|ref|ZP_05836862.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|261755034|ref|ZP_05998743.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] gi|23347896|gb|AAN29992.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330] gi|161335833|gb|ABX62138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC 23365] gi|260155910|gb|EEW90990.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40] gi|261744787|gb|EEY32713.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str. 686] Length = 410 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 12/312 (3%) Query: 1 MRQFLVIIAM--------AMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHP 50 +R FL I + S +F + + + + + D ++G ++ ++ Sbjct: 6 IRNFLRAIMLKSSSRISRFFASVVFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQ 65 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PASL K+MT Y+ F LK + + ISKNA+ K G T++ +A+ Sbjct: 66 HAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNG 125 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARD 169 +I+ SAND A + E L +E F + M ++ +G+ +T F N G+ + TTARD Sbjct: 126 MIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARD 185 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 MA+L ++ DFP+ F + +G+ Y N + + G DG+KTG+T SG+N+V Sbjct: 186 MAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLV 245 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 +SA ++ L+ V+LGA R+ A LL+ F + K + Q + Sbjct: 246 SSAYINNRHLVGVVLGAGSAGQRDGQKAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLK 304 Query: 290 PNISEEVCTTQK 301 P++ ++ + Sbjct: 305 PDVVADLIDDTQ 316 >gi|295399022|ref|ZP_06809004.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|312110372|ref|YP_003988688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] gi|294978488|gb|EFG54084.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus thermoglucosidasius C56-YS93] gi|311215473|gb|ADP74077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y4.1MC1] Length = 379 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 143/342 (41%), Gaps = 27/342 (7%) Query: 5 LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L I+A+AML + P + A L++ ++G ++ E AS+TK+MTA Sbjct: 9 LFIVAVAMLFSCIPDQAKAMNEVSAQSAVLMEQHSGRILLEKDAHTKRRIASITKIMTAI 68 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + +T+S A S+ K+G + L + + L+++S ND AVAI Sbjct: 69 LALES-----GKMDDTVTVSARAVRTEGSSIYLKEGEKIKLRDLVYGLMLRSGNDAAVAI 123 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFP 182 AE + + + FV MN + +G+ T F N HG+ HY+TA DMA+L Sbjct: 124 AEHVGGSVEGFVVLMNQKAAEIGMRNTEFANPHGLDDAENHYSTAYDMALLMQYAMK-NK 182 Query: 183 QYMHYFQIKGLEIKG------KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQG 235 ++ + K + + N N + + G KTG+T + +V +A + Sbjct: 183 EFRKISRTKVYRAPDPEGKSERVWRNKNKLLTKLYEYCTGGKTGYTKRANRTLVTTASKD 242 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNE-- 288 LIAV L A D ++ GF + ++ I I FY++N+ Sbjct: 243 GLDLIAVTLDAPDD---WNDHIAMYEYGFKHYVIAKVDQKRMIKKIRDSFYRENIQASRA 299 Query: 289 --VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 P EE+ + +I + KD+ K L Sbjct: 300 LRYPVTEEEMKDLRVKIHLLRPHKEWKKDESRIPAIVGKAVL 341 >gi|254719069|ref|ZP_05180880.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|265984060|ref|ZP_06096795.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306838351|ref|ZP_07471196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] gi|264662652|gb|EEZ32913.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13] gi|306406491|gb|EFM62725.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653] Length = 396 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTD 269 G D Sbjct: 277 QWGMTGFDD 285 >gi|23099281|ref|NP_692747.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777510|dbj|BAC13782.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 367 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 13/293 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 MR F+ ++ +L FP A + L++ +TG V+ E + + AS+TK+ Sbjct: 2 MRVFIGLLTSLILFMSFPSYGQALPSVSANNAVLIEQSTGRVLFEKNANEEASIASITKI 61 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA + ML +T S+ A S+ ++G + L + + L+++S ND Sbjct: 62 MTAIIAIES-----GMLDEQVTTSRKAIYTEGSSIYLEQGEEIPLKDLVYGLMLRSGNDA 116 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVAIAE + +E+ FV MN +K LG+ THF N HG+ HY++A DMAIL + Sbjct: 117 AVAIAEHVGGSEEGFVYLMNEKAKWLGMENTHFDNPHGLDSDTHYSSAYDMAIL-MKYAM 175 Query: 180 DFPQYMHYFQIKGLEIKGKKYP--NTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGD 236 D P + Q + Y N N + + G KTG+T A+G +V SA + Sbjct: 176 DNPMFREVSQSDSYLSNNRTYHWQNKNKLLTRLYEYCTGGKTGYTKATGRTLVTSAHKNG 235 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 LIAV L A D + + GF + ++ + +++V Sbjct: 236 MDLIAVTLDAPDD---WQDHIGMFEWGFEQFEMKTVQEEGTALYHIEPKTSKV 285 >gi|229190458|ref|ZP_04317457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228593007|gb|EEK50827.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] Length = 416 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 147/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVV 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N E+ Q + + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKEKDVVVQMKQVVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVT 354 >gi|118497499|ref|YP_898549.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida U112] gi|195536192|ref|ZP_03079199.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida FTE] gi|118423405|gb|ABK89795.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida U112] gi|194372669|gb|EDX27380.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. novicida FTE] Length = 444 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 137/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T + IS+NA Sbjct: 53 DAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMVPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDSERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|254369366|ref|ZP_04985378.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica FSC022] gi|157122316|gb|EDO66456.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica FSC022] Length = 444 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 136/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+S Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|89256395|ref|YP_513757.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. holarctica LVS] gi|115314839|ref|YP_763562.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica OSU18] gi|156502486|ref|YP_001428551.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010417|ref|ZP_02275348.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FSC200] gi|254367733|ref|ZP_04983754.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Francisella tularensis subsp. holarctica 257] gi|290953818|ref|ZP_06558439.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica URFT1] gi|295312829|ref|ZP_06803561.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica URFT1] gi|89144226|emb|CAJ79499.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein [Francisella tularensis subsp. holarctica LVS] gi|115129738|gb|ABI82925.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis subsp. holarctica OSU18] gi|134253544|gb|EBA52638.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Francisella tularensis subsp. holarctica 257] gi|156253089|gb|ABU61595.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 444 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 136/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + +D TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+S Q + I+V+LG R+ SA LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|30260203|ref|NP_842580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames] gi|47525265|ref|YP_016614.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames Ancestor'] gi|30253524|gb|AAP24066.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. Ames] gi|47500413|gb|AAT29089.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. 'Ames Ancestor'] Length = 435 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 339 >gi|163843338|ref|YP_001627742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] gi|163674061|gb|ABY38172.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445] Length = 410 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 12/312 (3%) Query: 1 MRQFLVIIAM--------AMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHP 50 +R FL I + S +F + + + + + D ++G ++ ++ Sbjct: 6 IRNFLRAIMLKSSSRISRFFASVVFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQ 65 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PASL K+MT Y+ F LK + + ISKNA+ K G T++ +A+ Sbjct: 66 HAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNG 125 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARD 169 +I+ SAND A + E L +E F + M ++ +G+ +T F N G+ + TTARD Sbjct: 126 MIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARD 185 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 MA+L ++ DFP+ F + +G+ Y N + + G DG+KTG+T SG+N+V Sbjct: 186 MAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLV 245 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 +SA ++ L+ V+LGA R+ A LL+ F + K + Q + Sbjct: 246 SSAYINNRHLVGVVLGAGSAGQRDGQKAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLK 304 Query: 290 PNISEEVCTTQK 301 P++ ++ + Sbjct: 305 PDVVADLIDDTQ 316 >gi|94496388|ref|ZP_01302965.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58] gi|94424134|gb|EAT09158.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58] Length = 387 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 137/312 (43%), Gaps = 17/312 (5%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ +++A +++ + T + P + D ++G V+ + + PAS+ K+ Sbjct: 1 MKKSLAMLLAAGLVAQPVIAAAPPYTTEAPIAYMKDLSSGAVLYDKGGETRIPPASMAKM 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVK 114 MTA+V F +++ L T T+ + S G ++++N L ++ Sbjct: 61 MTAHVAFRLIQKGDLKLDTKFTVRPETWQQWHGPKAGSTMFLSAGEQVSVENLLHGIVTL 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173 S ND V +AE + TE+ FV MN K LGL +HF ++G G Y TA D+A L Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNEEGKRLGLKNSHFGTSNGWPDEGVTYVTAEDLATL 180 Query: 174 SWRIKTDFPQ-YMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + P Y ++ K + N N +G GADG+KTG T +G+ Sbjct: 181 AQATIEETPDLYKRFYATKSFTWGQTMGGSAIEQANRNPILGKIAGADGLKTGHTEEAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQ 283 SA Q + L+ V+ G N R K S + GF + KK + Q Sbjct: 241 GFTGSAEQDGRRLVMVVAGLNSFNGRIKESVRFMDWGFKAWKAQPLFKKGQTVETAEVQL 300 Query: 284 NLSNEVPNISEE 295 + VP ++ + Sbjct: 301 GSATSVPLVAPQ 312 >gi|229127885|ref|ZP_04256871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228655650|gb|EEL11502.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] Length = 416 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 145/356 (40%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N E+ Q + K KD KE + E+ +K T Sbjct: 299 KGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAPIKEGGT 354 >gi|85716353|ref|ZP_01047326.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] gi|85696869|gb|EAQ34754.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter sp. Nb-311A] Length = 582 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 138/247 (55%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G ++ PD P +PASLTK+MT Y++F L + L + + +S +A+ P Sbjct: 57 IVVDANSGATLSSVNPDSPRHPASLTKMMTLYMLFERLDAGRISLDSEMRVSAHAAAQDP 116 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + ++G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++ T Sbjct: 117 TKLGLRQGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALGMTRTV 176 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA G+ TTARD A L ++ FP+Y YF +G+ N +G+ Sbjct: 177 YRNASGLPDDDQITTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTVRGHNRLIGSVD 236 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+ +SGFN+V + +G++ L+ V+LG ++R+ LL+ R+ Sbjct: 237 GVDGIKTGYIRSSGFNLVTNIRRGNRHLVGVVLGGRSGSSRDATMRKLLAENLDKAATRR 296 Query: 272 KINYIIK 278 + I + Sbjct: 297 TVAAIAE 303 >gi|298368809|ref|ZP_06980127.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon 014 str. F0314] gi|298282812|gb|EFI24299.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon 014 str. F0314] Length = 450 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 13/265 (4%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + + + D + V+A N PD+ PASLTK+MTAY+ F L++ + Sbjct: 81 AAVPQIAATAFIVKDLQSNQVLAANNPDNLIEPASLTKMMTAYLTFKALEDGTLKADEML 140 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TE----- 131 T+S S +++ + LK +IV+S ND A+ +AE++ +E Sbjct: 141 TVSDAGWHTEGSRMFLNPHVPVSVSDLLKGMIVQSGNDAAITLAEAIGGIGNDSEQTETP 200 Query: 132 ----KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K LG++ T F N G+ H +T D+A+L+ + D+P+Y Sbjct: 201 KPPLENFVAMMNMEAKRLGMNHTRFNNPTGLASERHLSTVSDLALLAAALIRDYPKYYPI 260 Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 F +K G + PN N + DG+KTG T ++G+N+ AS+ + + +I +++GA Sbjct: 261 FSLKSFRYNGIEQPNRNLLLFRDSSVDGLKTGHTESAGYNLAASSNRNGRRIITIVVGAE 320 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272 R S LL+ K Sbjct: 321 STEARASESGKLLNWALQAFDTPKL 345 >gi|260881011|ref|ZP_05403380.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260850172|gb|EEX70179.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 412 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 24/325 (7%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + ++D +G VI E D PAS TK+MT + + + +T+S Sbjct: 67 QNLTARSAVVIDAASGQVIYERNKDERRFPASTTKIMTLILALEH-----SNMDDMVTVS 121 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 NA+ S + G + + + L +++ S ND VA+AE + + KF M + Sbjct: 122 SNAAGTEGSTLWLEAGEKIRMGDLLYGMMMHSGNDATVAVAEHIAGSVDKFAAMMTAKAH 181 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---- 199 +G T+F NA+G+ + HYTTA D+A ++ P + K ++ K Sbjct: 182 EIGAVNTNFANANGLPREDHYTTAYDLAKIT-AYGYRVPGFEQIVSTKEIDFDWVKDPSH 240 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + + GA+G+KTG+T A+G +V+ A + L+AV+L ++ S Sbjct: 241 HLRNENQMLWLYRGANGVKTGYTDAAGRCLVSGAKKDGLQLVAVVLDSVYM---WNDSIK 297 Query: 259 LLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCT---TQKEIINYNTQMK- 311 LL GF + T K+ + + ++P + E T + E Y T+++ Sbjct: 298 LLDYGFAHVEPDTIVKEGDTVGYANVAGGTGRKLPLKAAETLTLAKLKGEGEAYKTRIEA 357 Query: 312 ---EAKDKESHFIDFEKITLLKNKI 333 A KE + + L ++ Sbjct: 358 DDLRAPIKEGDTVGRLVVELDGKEV 382 >gi|241758793|ref|ZP_04756906.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens SK114] gi|241321001|gb|EER57214.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens SK114] Length = 405 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 29/302 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP---------------------------YYTL 33 M++ L+ + A L N P L+ P Y + Sbjct: 2 MKKTLLSLIFAALLN-TPALAADPVASAPVVQSEAQTQPLLHSINSPTTPPEIAATAYIV 60 Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 D ++ +A N D P PA+LT++MTAY+ F L+ +T+S A + S Sbjct: 61 TDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLEAGQMLTVSNAAWKVEGSR 120 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHF 152 +++ + +K ++SAND A+ +AE+L + +FV+ MN +K LG+ THF Sbjct: 121 MFLDPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSIDEFVKQMNEEAKRLGMKHTHF 180 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N + Sbjct: 181 NNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRDSS 240 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL+ K Sbjct: 241 IDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQAFDTPKL 300 Query: 273 IN 274 N Sbjct: 301 YN 302 >gi|229603861|ref|YP_002864665.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0248] gi|229268269|gb|ACQ49906.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis str. A0248] Length = 438 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 342 >gi|188585838|ref|YP_001917383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350525|gb|ACB84795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 408 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 16/291 (5%) Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNP 53 M+ +II + L + P LS + + + L++ TG I EN + W P Sbjct: 1 MKFNNIYIIIPLLFLMIVNPLLSPSVSAEEFDFDAESVILIEAETGRTIYENNAEKSWPP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK+MT + L E + L +S A++ S ++ +T+++ L + V Sbjct: 61 ASLTKVMTLVIGLEALNEGELELEETTRVSAKANQTGGSQMFLRENQEVTIEDLLTGIAV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND VA+AE + + FV MN ++ +GL T+F + HG+ G Y ARD+A L Sbjct: 121 VSANDGCVALAEHMEGSVNNFVNRMNEKAEEIGLENTNFKDPHGLASDGQYMNARDVARL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWAV--------GTFLGADGMKTGFTCAS 224 S + P+ + I G + + N N + ++ G DG+KTG + Sbjct: 181 SQYAVNETPKILELESITGFQFNIESTQYNRNLMLPDHPQTTRYSYEGTDGLKTGQIEEA 240 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 G+N V +A + D LIAV+LGA ++ R ++ L GF K + Sbjct: 241 GYNFVGTAQRDDMRLIAVVLGAEEQTERFNITRQLFDHGFSEYQKIKLFDE 291 >gi|65317476|ref|ZP_00390435.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A2012] Length = 443 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAML--SNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L S + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDAXLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 347 >gi|169831557|ref|YP_001717539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] gi|169638401|gb|ACA59907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis audaxviator MP104C] Length = 376 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 36/361 (9%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYPD 48 + L ++ +L +F L + P L+D TGHV+ Sbjct: 2 KLLARTSLTLLIVVFALLGPQSASAEPSADSTMKPPRVTADAAVLVDVETGHVLFAKNER 61 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNA 107 +PASLTK+MTA V + +T+S+ A+ + S + G +TL+N Sbjct: 62 QRKDPASLTKVMTAIVALEAGRPG-----DVVTVSERAARFGRGSVIDLRAGEKITLENL 116 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK ++ SAND +AIAE + FV+ MN ++ LG T FMN HG HY+TA Sbjct: 117 LKAALIMSANDSTIAIAEHVAGDYDLFVRWMNLKARQLGAHDTRFMNTHGFTHPNHYSTA 176 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGT-FLGADGMKTGF 220 D+A ++ PQ+ + + + + + + NTN + + F G DG+KTG Sbjct: 177 ADLAEITRYALRI-PQFAALVRTREITVYWRDSDRKRTIRNTNRLLRSDFEGIDGVKTGT 235 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIK 278 T A+G ++ASA + + ++AV+L + + R + LL+ GF + + I + Sbjct: 236 TSAAGHCLIASATRDGRRVLAVVLHS---DGRYLDARRLLTYGFALEPVEVATRGDQITR 292 Query: 279 DFYQQNLSNE---VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 ++ + + VP + + + ++ +++ K E+ EK+ + +I Sbjct: 293 LLVREGVRPDVIVVPAETVRLYIPEAQLPALEKEVRLKKTLEAPIAPGEKLGEMAFRING 352 Query: 336 K 336 + Sbjct: 353 R 353 >gi|241668486|ref|ZP_04756064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877020|ref|ZP_05249730.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843041|gb|EET21455.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 444 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+ A Sbjct: 53 DAPAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP + +GL + Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCSKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|222093783|ref|YP_002527831.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|221237829|gb|ACM10539.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 435 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 304 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 349 >gi|317121890|ref|YP_004101893.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] gi|315591870|gb|ADU51166.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter marianensis DSM 12885] Length = 541 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 13/236 (5%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 +G V+ + P PAS TK++TA V + L +T+S+ A+ S Sbjct: 215 SGQVLWAHNPHQRRAPASTTKILTAIVALEY-----GNLDDTVTVSEYAASTEGSTMDLS 269 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 G TL L L+++S ND AVAIAE + +E F + MN T+ LGL THF N HG Sbjct: 270 AGERYTLRELLWGLMLESGNDAAVAIAEHISGSEAAFARLMNETALRLGLRDTHFTNPHG 329 Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLG 212 + GHYTTA D+A+++ + Q + + +G + +TN + Sbjct: 330 LHDPGHYTTAYDLAVMTRYALANDYFARLVCQPEKVLCRGDGDWVRILSSTNRLLWYREW 389 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 G+KTG T A+G +V+S + + LIAV+L + D R S LL GF Sbjct: 390 IRGVKTGTTNAAGPCLVSSGERDGRRLIAVVLDSGD---RWADSERLLEWGFRAFQ 442 >gi|229073057|ref|ZP_04206247.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228710062|gb|EEL62046.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] Length = 416 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNREQEAPIKKGVT 354 >gi|42779091|ref|NP_976338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] gi|42735006|gb|AAS38946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987] Length = 438 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMFTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|332186127|ref|ZP_08387873.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas sp. S17] gi|332013942|gb|EGI56001.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas sp. S17] Length = 390 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 15/276 (5%) Query: 18 PFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 P ++ A P + D ++G ++ + D PAS+ K+MT YV F +K+ + Sbjct: 20 PSIAAAPEFQTTAPVAFMKDLSSGAILFQRDADRRMPPASMAKMMTVYVAFDLIKKGQLK 79 Query: 76 LTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L +T+ S +++ N L ++ S ND V +AE + T Sbjct: 80 LDDMVTVQPETWAKWHGPQAGSTMFLSPNEQVSVANLLYGIVTLSGNDACVVLAEHIAGT 139 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ-YMHYF 188 E+ FV+ MN T+K +GL+ +HF ++G G Y TARD+A L+ DFP+ Y ++ Sbjct: 140 EQNFVERMNRTAKQIGLANSHFGTSNGWPDGGVTYVTARDLADLAEHTIQDFPKLYKQFY 199 Query: 189 QIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 + N + +G GADG+KTG T +G+ SA Q + L+ V Sbjct: 200 SRRDFTWGKTMGGNAITQANRDPLLGRVAGADGLKTGHTEEAGYGFTGSAEQNGRRLVMV 259 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 + G N R + S ++ GF + + K Sbjct: 260 MAGLTSSNARAEESVKFMNWGFRAWQAKPVVAQGKK 295 >gi|167627934|ref|YP_001678434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597935|gb|ABZ87933.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 444 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 55/320 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+ A Sbjct: 53 DAPAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP + +GL + Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCAKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 GMKTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL + + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYEN---VL 349 Query: 275 YIIKDFYQQNLSNEVPNISE 294 + ++ +PN Sbjct: 350 LYKANSPVTISADNIPNAKA 369 >gi|239827577|ref|YP_002950201.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] gi|239807870|gb|ACS24935.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70] Length = 381 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 28/343 (8%) Query: 5 LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L I A+ ML + P + A L++ N+G ++ E AS+TK+MT Sbjct: 9 LFIAAVMMLFSCIPDRAKAMNGVSAQSAILMEQNSGRILFEKDAHTKRRIASITKIMTVI 68 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + +T+S A S+ K+G + L + + +++S ND AVAI Sbjct: 69 LAIES-----GKMDDTVTVSARAVHTEGSSIYLKEGEKIKLRDLVYGTMLRSGNDAAVAI 123 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFP 182 AE + + + FV MN + +G+ THF N HG+ HY+TA DMA+L Sbjct: 124 AEHVGGSVEGFVFLMNQKAAEIGMRNTHFANPHGLDDSENHYSTAYDMALLMQYAMK-NK 182 Query: 183 QYMHYFQIKGL-------EIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ 234 ++ + E + + N N + + + G KTG+T + +V +A + Sbjct: 183 EFRKISGTEVYRAPASPGEDWDRVWRNKNKLLTSLYEYCTGGKTGYTKRAKRTLVTTASK 242 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK----TDRKKINYIIKD-FYQQNLSNE- 288 G LI+V L A D ++ GF + +RK++ I+D FY++N+ Sbjct: 243 GGMDLISVTLDAPDD---WNDHIAMYEYGFGHYMIAKVNRKRMVKKIRDSFYRKNIQASR 299 Query: 289 ---VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 P EE+ +I + KD+ K L Sbjct: 300 DLRYPVTEEEIKELHVKIYLLRPKKDWKKDERGIPTVVGKAVL 342 >gi|284800030|ref|ZP_05985503.2| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava NJ9703] gi|284796183|gb|EFC51530.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava NJ9703] Length = 405 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 1/255 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + Y + D ++ +A N D P PA+LT++MTAY+ F L+ + + Sbjct: 48 TTPPEIAATAYIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEASQML 107 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMN 139 T+S A + S +++ + +K ++SAND A+ +AE++ + +FV+ MN Sbjct: 108 TVSNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMN 167 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LG+ THF N G+ +GH +T D+AIL+ + D+P+Y F K + + Sbjct: 168 EEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIE 227 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ L Sbjct: 228 QPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKL 287 Query: 260 LSMGFYNKTDRKKIN 274 L+ K N Sbjct: 288 LNWSLQAFDTPKLYN 302 >gi|206978355|ref|ZP_03239229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus H3081.97] gi|217957590|ref|YP_002336132.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH187] gi|206743447|gb|EDZ54880.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus H3081.97] gi|217065585|gb|ACJ79835.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus AH187] gi|324324003|gb|ADY19263.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 438 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|138895855|ref|YP_001126308.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] gi|134267368|gb|ABO67563.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2] Length = 446 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 143/355 (40%), Gaps = 32/355 (9%) Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+++ L+ + ++S + L L++ ++G ++ AS Sbjct: 66 MKRWKRLVWLIALTAGIMSCLPGKLHAMNGVSAKSAILIEQHSGRILFAKDAHTKRRIAS 125 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + L +T+S A S+ ++G M L + + L+++S Sbjct: 126 ITKIMTAILAIES-----GKLDDTVTVSARAVRTEGSSIYLRQGEKMKLRDLVYGLMLRS 180 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILS 174 ND AVAIAE + + + FV MN + +G+ T F N HG+ HY+TA DMA+L Sbjct: 181 GNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEFANPHGLDDAESHYSTAYDMALLM 240 Query: 175 WRIKTDFPQYMHYFQIKGL-------EIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGF 226 ++ K E + + N N + + + G KTG+T + Sbjct: 241 QYAMK-NKEFRRISGTKVYRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTKRAHR 299 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFY 281 +V +A + L+AV L A D ++ GF N + ++ + I FY Sbjct: 300 TLVTTASKDGIDLVAVTLDASDD---WNDHIAMYEYGFSNYRIAKVSGKRIVKRISDPFY 356 Query: 282 QQNLSNE----VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332 + L P +E+ + ++ + + ++ K L K Sbjct: 357 KGRLQAARDLRYPVTEKEMGELRVKVYLLKPRDEWKENPNRAPTAVGKAVLYLRK 411 >gi|229136857|ref|ZP_04265486.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] gi|228646592|gb|EEL02797.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST26] Length = 443 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 357 >gi|223928102|gb|ACN23817.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. enrichment culture clone 7-14] Length = 455 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 161/368 (43%), Gaps = 35/368 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHP 50 +++F M + + +A + + L+D TG ++ + Sbjct: 3 IKRFFAAFLMLLTVVSLSAVPVAADDAVTPVPDPNIQAKAAVLIDAETGTMLYGKNEHNE 62 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNA 107 PASLTK+MTA + + + K L IT S +A S++ K G TMT++N Sbjct: 63 LYPASLTKIMTALLTLEAVDQGKLSLDQEITASASALNGLAADGSSAGIKVGETMTVENY 122 Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167 LK +++ SAN+ +AE++ + FV MN +K LG THF+N +G+ HYT+A Sbjct: 123 LKCMLIVSANEACDVLAEAVSGSVSAFVDAMNAKAKELGCQNTHFVNPNGLHDSQHYTSA 182 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGT-------FLGAD 214 D+ +++ +P++M + EI ++ TN+ + + A Sbjct: 183 WDLYLITAEALK-YPEFMSICDMGVAEIPASNLSETRRLHTTNYLLSNWRANGYLYSDAH 241 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--------RNTRNKVSASLLSMGFYN 266 G+KTG T +G +V+SA +G ++LI+V+LGA + L GF N Sbjct: 242 GIKTGSTSEAGHCLVSSATKGSRTLISVVLGAERIVGADGVADVQSFSETKRLFLWGFEN 301 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + + ++ + +++ +++ + I+ + + +E + K + + Sbjct: 302 FSTKTVLSELDMLADVPVTLSKIDSVAVHPASAVDLILPNDVKPEELEQKLVLPENVKAP 361 Query: 327 TLLKNKIT 334 ++ Sbjct: 362 VTAGQELG 369 >gi|228952739|ref|ZP_04114812.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806910|gb|EEM53456.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 416 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVT 354 >gi|228983269|ref|ZP_04143484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153793|ref|ZP_04281925.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|229194404|ref|ZP_04321209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228589060|gb|EEK47073.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1293] gi|228629662|gb|EEK86357.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 4342] gi|228776449|gb|EEM24800.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 443 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 EMKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 357 >gi|319638282|ref|ZP_07993045.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102] gi|317400555|gb|EFV81213.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102] Length = 405 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 1/255 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + Y + D ++ +A N D P PA+LT++MTAY+ F L+ + Sbjct: 48 TTPPEIAATAYIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEAGQML 107 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMN 139 T+S A + S +++ + +K ++SAND A+ +AE++ + +FV+ MN Sbjct: 108 TVSNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMN 167 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LG+ THF N G+ +GH +T D+AIL+ + D+P+Y F K + + Sbjct: 168 EEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIE 227 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ L Sbjct: 228 QPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKL 287 Query: 260 LSMGFYNKTDRKKIN 274 L+ K N Sbjct: 288 LNWSLQAFDTPKLYN 302 >gi|228943200|ref|ZP_04105668.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975976|ref|ZP_04136496.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979109|ref|ZP_04139457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228780635|gb|EEM28854.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228783733|gb|EEM31792.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816479|gb|EEM62636.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 442 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYKKNADESLAI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ + Sbjct: 132 AMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNNDLKGYHPE 191 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N + Q + K KD KE ++ Sbjct: 312 FEVKNV--YRKDSVVKGHETVRVANAKDTDVVVQTKQAVSLPMPKGNKDIYKKEFKVLNK 369 Query: 324 EKITLLKNKIT 334 ++ +K +T Sbjct: 370 KQEVPIKKGVT 380 >gi|253576372|ref|ZP_04853702.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844265|gb|EES72283.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 399 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 145/345 (42%), Gaps = 27/345 (7%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLT 57 F ++A +L ++ P ++D +G ++ + D ASLT Sbjct: 12 SFCCLLAAVLLFAWLNPQAVQAAPDAPSIHAQAAAVIDVTSGRLLYSLHGDDELPIASLT 71 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA V L+ +T+ KNA S+ G M+L+N L L+++S N Sbjct: 72 KIMTAIVAIEH-----GKLSDMVTVGKNAYGKEGSSLYLHLGEEMSLENMLYGLMLRSGN 126 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A AIAE + +E+ FV MN +K LGL+ THF N HG+ GHY++A D+A L+ Sbjct: 127 DAATAIAEHVGGSEEGFVYLMNEKAKLLGLTHTHFQNPHGLDAKGHYSSANDLAKLTSYA 186 Query: 178 KTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 P + + K+ N N + + GADG+KTG+T + +V+S Sbjct: 187 LK-NPHFKEIVRTPSKTAPNPNDPWDYKWLNKNKMLRFYDGADGVKTGYTKTARRCLVSS 245 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEV 289 A + Q + V L D LL F N I I++ + Sbjct: 246 ATRNGQQIAVVTLNDGDD---WNDHRKLLDYSFANFPLTTLISKGQAIENGLVTGADFKY 302 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 EEV ++ + ++ EA+ + + L +I Sbjct: 303 ALAPEEVGKVERRL-----KLVEARTGSFGYRGRISVRLNGEEIG 342 >gi|229150695|ref|ZP_04278909.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228632782|gb|EEK89397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] Length = 416 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVT 354 >gi|307292800|ref|ZP_07572646.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium chlorophenolicum L-1] gi|306880866|gb|EFN12082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium chlorophenolicum L-1] Length = 387 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 14/281 (4%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + +LS + T++ P L D ++G V+ + + PAS+ K+ Sbjct: 1 MKKSVAALLFVGLLSQPLTAAAPPYTSEAPIAYLKDMSSGAVLYDKGGETRMPPASMAKM 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVK 114 MTA+V F +++ L T+ + S G ++++N L ++ Sbjct: 61 MTAHVAFRLIQKGDLKLDQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTL 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173 S ND V +AE + TE+ FV MN +K LGL ++F ++G G Y TA D+A L Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLASL 180 Query: 174 SWRIKTDFPQ-YMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + P Y ++ + + N N +G GADG+KTG T +G+ Sbjct: 181 AEATIEETPSLYKKFYATRAFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTEEAGY 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 SA Q + L+ V+ G N R S + GF Sbjct: 241 GFTGSAEQEGRRLVMVVAGLTSANQRIAESVRFMDWGFRAW 281 >gi|326940194|gb|AEA16090.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 437 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 40/371 (10%) Query: 2 RQFLVIIA-MAMLSNIFPFL--SIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ I+ + + ++F + AET + L++ N+G ++ + D Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYKKNADESLAI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162 + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ + Sbjct: 127 AMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNNDLKGYHPE 186 Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV--- 207 + +ARD AIL+ R+ DFP+ + +I +G KYP N NW + Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + G DG+KTG T +G + + LI+V++ A R + L GF N Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDF 323 + Y + + + V N + Q + K KD KE ++ Sbjct: 307 FEVKNV--YRKDSVVKGHETVRVANAKDTDVVVQTKQAVSLPMPKGNKDIYKKEFKVLNK 364 Query: 324 EKITLLKNKIT 334 ++ +K +T Sbjct: 365 KQEVPIKKGVT 375 >gi|87199959|ref|YP_497216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium aromaticivorans DSM 12444] gi|87135640|gb|ABD26382.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium aromaticivorans DSM 12444] Length = 391 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 19/287 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAENYPD 48 MR V +A ++ P + A P L+D+ +G + Sbjct: 1 MRLKFVAVAAGLIVGAMPVQAAAPEVGLDAAMTSLPRIDAPIALLVDSGSGRTLYARDVH 60 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLD 105 + PAS+TK+MT+YV F +++ K L I+I + S + T+ Sbjct: 61 RRFVPASITKIMTSYVAFDLVRKGKLRLDQRISIRPETFRKWKNVGSTMFLPAEAQPTVA 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-Y 164 ++ ++ SAND V +AE + F + MN + LG+ +HF +G + G Y Sbjct: 121 ELIEGIVTVSANDACVVLAEGAVGSVPAFTRLMNEAALQLGMRDSHFNTPNGWMDEGQTY 180 Query: 165 TTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223 TA D+A LS + T FP Y ++ + G PN N G GADG+KTGFT Sbjct: 181 VTADDLAKLSGALMTRFPDLYKRFYGHATMTWNGITQPNHNPLYGHTEGADGVKTGFTNE 240 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSASLLSMGFYNKTD 269 +G+ V SA +G + LI V LG DR R S +L+ GF Sbjct: 241 AGYGFVGSAERGGRRLIMV-LGGYDRPIDRTNQSRALIEWGFSAWES 286 >gi|256828650|ref|YP_003157378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium baculatum DSM 4028] gi|256577826|gb|ACU88962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium baculatum DSM 4028] Length = 401 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 1/241 (0%) Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93 ++ +TG V E+ PD PAS+TKL+T Y++ L + + TPI +S A + S Sbjct: 148 INMSTGDVYYEHNPDKTIAPASITKLLTLYIIREALAQGRLSQATPIPVSAEAVKTGGSR 207 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHF 152 K+ + L +K + V SAN+ VA+AE KFV MN +K +G+ + F Sbjct: 208 MRLKRNEKVPLGELIKGISVVSANNACVAVAEYFGKGDPSKFVAQMNEKAKKIGMVNSRF 267 Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212 N +G+ G +TARD+A LS FP+ + + G + N N + T+ G Sbjct: 268 KNPNGLPASGQLSTARDIAKLSVAYLRTFPESLKVHSMTSHTFHGATHRNANTLLRTYKG 327 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 DG+KTGF C +G+NI A+A +G L+AV+LGA + R + +A LL GF D +K Sbjct: 328 VDGLKTGFVCDAGYNITATAKRGKTRLVAVVLGAQNSAVRQRETARLLDYGFRRAADEEK 387 Query: 273 I 273 + Sbjct: 388 L 388 >gi|218895150|ref|YP_002443561.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus G9842] gi|218543092|gb|ACK95486.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus G9842] Length = 438 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|228963111|ref|ZP_04124282.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796567|gb|EEM44004.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 443 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 12 KRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 312 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 357 >gi|229178819|ref|ZP_04306179.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228604584|gb|EEK62045.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] Length = 416 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVT 354 >gi|225076059|ref|ZP_03719258.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens NRL30031/H210] gi|224952619|gb|EEG33828.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens NRL30031/H210] Length = 405 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 127/253 (50%), Gaps = 1/253 (0%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 + Y + D ++ +A N D P PA+LT++MTAY+ F L+ + Sbjct: 48 TTPPEIAATAYIVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLQADQML 107 Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMN 139 T+S + S +++ + +K ++SAND A+ +AE+L + +FV+ MN Sbjct: 108 TVSNVGWKVEGSRMFLNPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSVDEFVKQMN 167 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 +K LG+ THF N G+ +GH +T D+AIL+ + D+P+Y F K + + Sbjct: 168 EEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIE 227 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 PN N + DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ L Sbjct: 228 QPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKL 287 Query: 260 LSMGFYNKTDRKK 272 L+ K Sbjct: 288 LNWSLQAFDTPKL 300 >gi|218666016|ref|YP_002426742.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518229|gb|ACK78815.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 323 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 12/274 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ + + AET+ LP Y L++ +TG +IA P+ AS+TK Sbjct: 33 LFSWLSLVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITK 92 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT Y++F + L + A + S+ G T+ + + V S ND Sbjct: 93 LMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGND 152 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV A + + FV MN T++ +G+ +T F + G+ + + D+A+L+ + Sbjct: 153 AAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLM 212 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 T FPQ+M +F+ + G PN N VG GMK+G+T A+G +VA+ Q S Sbjct: 213 TQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGIS 272 Query: 239 LIAVILGALD--RNTR-----NKVSASLLSMGFY 265 LIAVILG R + S LL GF Sbjct: 273 LIAVILGVPSFRDEGRGFWRASWQSLKLLDWGFA 306 >gi|198284088|ref|YP_002220409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248609|gb|ACH84202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 317 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 12/274 (4%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ + + AET+ LP Y L++ +TG +IA P+ AS+TK Sbjct: 27 LFSWLSLVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITK 86 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 LMT Y++F + L + A + S+ G T+ + + V S ND Sbjct: 87 LMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGND 146 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AV A + + FV MN T++ +G+ +T F + G+ + + D+A+L+ + Sbjct: 147 AAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLM 206 Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 T FPQ+M +F+ + G PN N VG GMK+G+T A+G +VA+ Q S Sbjct: 207 TQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGIS 266 Query: 239 LIAVILGALD--RNTR-----NKVSASLLSMGFY 265 LIAVILG R + S LL GF Sbjct: 267 LIAVILGVPSFRDEGRGFWRASWQSLKLLDWGFA 300 >gi|328676052|gb|AEB28727.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida 3523] Length = 444 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 130/295 (44%), Gaps = 52/295 (17%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 P + ++ TG +++E D PASLTK+MT+Y+V S +K T I IS+NA Sbjct: 53 DAPAWVAMNYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENA 112 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S K G+ +++ N + + V S ND +A+AE + T + F MN T+K +G Sbjct: 113 ASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTTEAFTDLMNQTAKAIG 172 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199 ++ THF N G+ YTTA DMA+L+ +FP+ + KGL K Sbjct: 173 MNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIA 232 Query: 200 ---------------------------------------------YPNTNWAVGTFLGAD 214 N N + TF GAD Sbjct: 233 DRKQCLPKFDRATGNVIESYTTKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGAD 292 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 GMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL + Sbjct: 293 GMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYEN 347 >gi|228921188|ref|ZP_04084518.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838504|gb|EEM83815.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 416 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 29/334 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + K Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANF--KVKNVYGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + + V N ++ Q + K KD Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKD 332 >gi|194018065|ref|ZP_03056670.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC 7061] gi|194010257|gb|EDW19834.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC 7061] Length = 441 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 157/366 (42%), Gaps = 45/366 (12%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNP 53 ++Q +V I+A+A++ F +S A+ + P L++ +TG ++ + Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+ K+MT Y++ + E K T E SN +K + T+ + Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+ Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV--- 207 +A+DMA+L+ + D P+ + I + + PN N+ + Sbjct: 186 GTGPDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264 + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F Sbjct: 246 VKEYKGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305 Query: 265 YNKTDRKKINYIIKDFYQQNLS------NEVPNISEE---VCTTQKEIINYNTQMKEAKD 315 N T ++ + +N+ EVP +++E V + ++ ++ K Sbjct: 306 KNFTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVKNGDEKSFKAKVNIEKT 365 Query: 316 KESHFI 321 K I Sbjct: 366 KLEAPI 371 >gi|258515621|ref|YP_003191843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] gi|257779326|gb|ACV63220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 23/308 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 ++ ++ +A +LS ++ A+ L+D+ TG V PD PASLTK+ Sbjct: 5 KKLILALAAVILSLTNTSIAYAQEPVLSADAAVLMDSATGQVFFAKEPDKRRFPASLTKI 64 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSAND 118 MTA V + ISK A+ S + G +TL+N LK +V SAND Sbjct: 65 MTALVALE-----NGDPNDVVKISKKAASVSMGSVIDLRAGEEITLENLLKAALVCSAND 119 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 VAIAE + + F+ MN + + G T++ N +G HYTTA D+A+++ + Sbjct: 120 STVAIAEHVGGNVENFLVMMNARALSAGAVNTNYANTNGYTLPNHYTTAYDLALIARQAL 179 Query: 179 TDFPQYMHYFQIKGLEIKGK-------KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230 Q+ IK + + + NTN + F G DG+KTG T +G ++A Sbjct: 180 R-NKQFNRLISIKETTLNWEGNKNRTLEIRNTNRLLREGFPGIDGVKTGSTPRAGDCLIA 238 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSN 287 SA + + LIAV+L + N R +A++L+ GF + KK ++ + + Sbjct: 239 SASRNGRRLIAVVLHS---NNRYTDAANILNYGFKEIKSYQVFKKGEQVVSVPVMEGVLK 295 Query: 288 EVPNISEE 295 EVP I++ Sbjct: 296 EVPLITQS 303 >gi|301051750|ref|YP_003789961.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI] gi|300373919|gb|ADK02823.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 435 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 144/336 (42%), Gaps = 34/336 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ M L+ + P+ + + + L++ N+G ++ + D + Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+ Sbjct: 124 AMAIFSANGATIALAEAIASKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303 ++ Q+ + E + T++ I Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAI 339 >gi|291532362|emb|CBL05475.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1] Length = 376 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 128/280 (45%), Gaps = 16/280 (5%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L+D TG V+ E PD PAS TK+MT + + + + Sbjct: 26 QDMTAQAAILIDATTGRVLYEKNPDAKAMPASTTKMMTCILGLENAND-----DDIVEVD 80 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQHMNNTS 142 K A S +G + + L+ ++ S ND A AIA + + + FVQ MN+ + Sbjct: 81 KRAVGVEGSAIYINEGDKIKMSELLQATMLASGNDGAAAIAYYVGKGSLETFVQMMNDKA 140 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------- 195 K +G + THF N HG+ HYTTARD+A ++ R ++ K EI Sbjct: 141 KEIGATNTHFNNPHGLTDPNHYTTARDLAKIA-RYAYQNEKFRKIVSTKEQEIQWVNPAE 199 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + Y +TN + + G+KTG+T A+G +VASA + +LIAV+L D R Sbjct: 200 RKDIYGSTNRLLWNYDDVTGIKTGYTDAAGGCLVASAQKNGITLIAVVLKTSDSRARFVE 259 Query: 256 SASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNIS 293 +LL GF + + K ++ +I Y N +N + Sbjct: 260 GRALLDYGFKHIKEMKTVDEQKLISSIYTHNSTNYKTTVK 299 >gi|154483610|ref|ZP_02026058.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC 27560] gi|149735520|gb|EDM51406.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC 27560] Length = 387 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 9/260 (3%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 +F S L++++TG V+ EN + +PAS+TK+MT ++F + K Sbjct: 19 VFGEESHELNIDSKSCVLMESSTGMVLYENNQNEKLSPASITKIMTLVLIFDAIHSGKIK 78 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 LT T S A S ++G T T++ +K +I+ S ND +V +AE + +E+ FV Sbjct: 79 LTDVATTSAYAKSMGGSQVFLEEGETQTVETLIKCIIIASGNDASVVMAEMIAGSEEAFV 138 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + MN +K+LG++ THF++ G+ HYTTA+D+A++S + +P+ Y I Sbjct: 139 KKMNERAKSLGMNNTHFIDCCGLTDSDDHYTTAKDVALMSRELIEKYPEIFKYSTIWMES 198 Query: 195 IKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 I K NTN + T G+KTG T + + + A + LIAV++ A Sbjct: 199 ITHKTKAGEKEFVLSNTNKLLKTNQYVKGLKTGSTSKAKYCVSTVAEKDGVQLIAVVMAA 258 Query: 247 LDRNTRNKVSASLLSMGFYN 266 D R K S L++ GF N Sbjct: 259 PDYKIRFKESEKLINYGFSN 278 >gi|158320769|ref|YP_001513276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140968|gb|ABW19280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 442 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 151/367 (41%), Gaps = 40/367 (10%) Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWN 52 MR L II +LS F + A+ PY L+D TG V+ Sbjct: 1 MRSKPFYILTIIFTLILSFSFESMVFAQGQQPDISAPYGVLIDYETGTVLYNKNAHEKAY 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA +V A L +TI S+ KG + T+ L+ L+ Sbjct: 61 PASTTKVMTAVMVLE-----NANLDDKVTI-DYDLYVDGSSMYLLKGESFTVRELLQALL 114 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++SAND A A+A + + FV+ MN +K LG T+F N HG+ H TTA D+A+ Sbjct: 115 IRSANDAAEALAIHIAGSVDSFVEKMNARAKELGAFNTNFTNPHGLPDTNHVTTAYDLAM 174 Query: 173 LSWRIKTDFPQYMHYFQI-------KGLEIKGKKYPNTNWAVG----------------- 208 +S T F + + + + Y NTN + Sbjct: 175 ISKHAMT-FDLFRETVKTEMLILEPTEQTPETRYYRNTNKFLWGTGSANHMLYNGSYINI 233 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + DG+KTG+T A+G +++S+ Q D LI+V+LGA + S L+ G+ N Sbjct: 234 KYDIIDGLKTGYTGAAGNCLISSSFQNDHRLISVVLGAEGNHV-YSDSRRLIDYGYENFK 292 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 N+ + + + ++ + + ++ T+ K+ + + Sbjct: 293 LISLTNHNLDSIHIPIRNGAQDFVALSILNDKLTVVPLGTEYTNIKESLYLNENIQAPVK 352 Query: 329 LKNKITK 335 + + K Sbjct: 353 QGDTLGK 359 >gi|253577333|ref|ZP_04854650.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843233|gb|EES71264.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral taxon 786 str. D14] Length = 469 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 147/340 (43%), Gaps = 35/340 (10%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 ++ LL+ +G ++ + P PAS+TK+MT Y+V +K+ K +T+ +NA Sbjct: 76 EVSAAILLEPVSGQILLNVNGEQPLPPASMTKMMTEYIVAELVKQGKFSWDDVVTVGRNA 135 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 ++ S +G T++ + + SAND VA+AE + +E+ FV+ MN+ +K +G Sbjct: 136 AQTIGSRIFLAEGDQHTVEELYTAMAIASANDATVALAEYVAGSEQAFVKMMNDEAKRMG 195 Query: 147 LSATHFMNAHGV------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 + HF N+ G+ +A D AIL+ I TD P + + I+ + Sbjct: 196 MKTAHFANSTGLDIADMPAEFRPTDGKETVMSALDAAILAKYIVTDHPDFTRFTTIQSKK 255 Query: 195 IKGKK---YPNTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + N NW + + G DG+KTG T +G +A++ LI Sbjct: 256 FRDRDTAPMVNLNWMLEANKNVTNFKQFAYEGLDGLKTGHTSNAGNCFTGTAVRNGMRLI 315 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEVPNISE 294 +V++G R + +L GF N ++ + ++ + EVP +++ Sbjct: 316 SVVMGTASDKARFVETRKVLDYGFNNFETKQIVPPKTTVTGTETVTVKKAKNTEVPVVTD 375 Query: 295 EVCT---TQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + + + + D+ + ++ T + Sbjct: 376 QAVSFVVPKGADTSAVEAKVTLADESNLTAPLKQGTKVGT 415 >gi|30018287|ref|NP_829918.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29893827|gb|AAP07119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 438 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 146/348 (41%), Gaps = 36/348 (10%) Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 ++F+ ++ + L+ P+ + + + L++ N+G ++ + D + Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+M+ Y+V + + K I +S+ A + SN + G + T+ + Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159 + + SAN +A+AE++ E FV+ MN+ SK LG+ +N+ G+ Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGVKNYKCVNSTGLTNKDLKGMHPE 186 Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV---- 207 + +A+D+A L+ + D+P+ + +I E + +K N NW + Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLV 246 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G DG+KTG T +G + + I+V++ R + L GF N Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 ++ Y + + V N ++ Q + K +KD Sbjct: 307 EVKQM--YKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKD 352 >gi|229079541|ref|ZP_04212079.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228703766|gb|EEL56214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] Length = 416 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 32/356 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + A + L++ N+G ++ E D AS+TK+M+ Y+V Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEENSGKILYEKNADESLAIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K + IS+ A + SN + G + T+ + + + SAN +A+ Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170 E + E FV+ MN+ SK G+ F+N+ G+ + +ARD Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV----GTFLGADGMKTGFT 221 AIL+ R+ DFPQ ++ +I +G KYP N NW + + G DG+KTG T Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G + + LI+V++ A R + L GF N + Y Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNV--YGKDSVI 298 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKIT 334 + + + V N ++ Q + K KD KE + E+ +K +T Sbjct: 299 KGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNREQEAPIKKGVT 354 >gi|225175400|ref|ZP_03729395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169152|gb|EEG77951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 426 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 24/285 (8%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++++ + I P + AET P L+D TG V+ E PAS+T Sbjct: 8 SVILLVVSLIYLLINPVATWAETTAFPELNSQAAVLIDAQTGQVLFEKNMHQVLYPASIT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT + + L IT+S+ A S+ +TL+ AL L ++ Sbjct: 68 KIMTGIIALE-----EGNLDDTITMSREAVFSIGRNTSHVALDVDEELTLEQALYALAIE 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A IAE + + F Q MN + G T+F NAHG+ HYTTA DMA++ Sbjct: 123 SGNDAANGIAEHISGDVESFAQLMNKRAAEYGAKNTNFTNAHGLPDSDHYTTAYDMALIL 182 Query: 175 WRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-GTFLGADGM--KTGFTCAS 224 + P + F + E+ + + N N + G + A+ + KTG+T + Sbjct: 183 KQAVK-NPAFREIFSARNYEMPPTNKQPESRHFRNRNSLLSGRYEDAEILASKTGWTTLA 241 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 G +V +A Q ++ LIAV+L + DR +R + LL GF ++ Sbjct: 242 GHTLVTAARQENRELIAVVLNSQDRRSRYDDTIKLLDYGFNQFSE 286 >gi|260752472|ref|YP_003225365.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551835|gb|ACV74781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 400 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 17/295 (5%) Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+ L A+ + + P + D ++G V+ D PAS+ Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLI 112 K+MT YV F +K+ + L PIT+ + S ++ N L ++ Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171 S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188 Query: 172 ILSWRIKTDFPQ-YMHYFQIKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCA 223 L+ DFP Y ++ + K N + +G GADG+KTG T Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +G+ SA Q + L+ V+ G R + S + ++ GF + + ++ Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVR 303 >gi|92110365|emb|CAJ87634.1| putative penicillin binding protein 6b [Escherichia coli] Length = 335 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 138/277 (49%), Gaps = 10/277 (3%) Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLL 111 KLMT YVV + + +T+ ++A S K+G +++ + + L Sbjct: 13 KLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGL 72 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 IV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A Sbjct: 73 IVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLA 132 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVA 230 +LS I P++ H + K L G N N + + DG+KTG T +GFN++A Sbjct: 133 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 192 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 SA+ G + LIAV++GA R + + LL G N T + ++ K ++ + Sbjct: 193 SAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKE 252 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 NI+ T++E + + K + +D +++T Sbjct: 253 NIA---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 286 >gi|56551985|ref|YP_162824.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543559|gb|AAV89713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ZM4] Length = 400 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 17/295 (5%) Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+ L A+ + + P + D ++G V+ D PAS+ Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLI 112 K+MT YV F +K+ + L PIT+ + S ++ N L ++ Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171 S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188 Query: 172 ILSWRIKTDFPQ-YMHYFQIKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCA 223 L+ DFP Y ++ + K N + +G GADG+KTG T Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +G+ SA Q + L+ V+ G R + S + ++ GF + + ++ Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVR 303 >gi|241761932|ref|ZP_04760017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373612|gb|EER63184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 400 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 17/295 (5%) Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+ L A+ + + P + D ++G V+ D PAS+ Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLI 112 K+MT YV F +K+ + L PIT+ + S ++ N L ++ Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171 S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+ Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188 Query: 172 ILSWRIKTDFPQ-YMHYFQIKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCA 223 L+ DFP Y ++ + K N + +G GADG+KTG T Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +G+ SA Q + L+ V+ G R + S + ++ GF + + ++ Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVR 303 >gi|89070235|ref|ZP_01157559.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus HTCC2516] gi|89044155|gb|EAR50313.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus HTCC2516] Length = 411 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 5/257 (1%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 + + + D T ++ E D P PAS++KLMT Y+ F ++ + L Sbjct: 23 AAAQGFDTRANAAYVYDVTTETILLEKNADEPLPPASMSKLMTLYMAFEAIESGRLRLDE 82 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQ 136 + +S++A Y S T+++ L+ +IV S ND + +AE+L TE F + Sbjct: 83 QLPVSEHAMSYGGSTMFLDTTDRPTVEDLLRGVIVLSGNDASAVLAEALSPDGTEAGFAR 142 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 M + +GL+ + F N++G H + RD+ +++ R+ DFP F + E Sbjct: 143 LMTERGRQIGLTNSTFANSNGWPAPDHRMSVRDLGVVATRLIEDFPDLYPMFAEQTFEYD 202 Query: 197 GK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 G+ N N +G +GADG+KTG T +G+ +V SA+Q D+ ++ V+ G R Sbjct: 203 GRAPTNVRNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAVQEDRRVVFVLAGLDSTAERA 262 Query: 254 KVSASLLSMGFYNKTDR 270 + S +++ F ++ Sbjct: 263 EESERVVNWAFRQYVEK 279 >gi|90417678|ref|ZP_01225590.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] gi|90337350|gb|EAS51001.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans SI85-9A1] Length = 364 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 5/244 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 L+D TG V+ D P+ PASL K+MT +VF+ +K+ L T +S+ Sbjct: 5 ETTAREALLVDGETGTVLFAKNADAPFPPASLAKMMTMEIVFAAIKDGTLTLDTEFPVSE 64 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +A S + S + + ++ I++SAND A+ IAE + +E F + MN Sbjct: 65 HAWRTGGAPSRTSTMFAELKSQVPVSALIRGAIIQSANDAAIVIAEGMEGSEAAFAERMN 124 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG+ + F N G+ Y TARD+ L+ +++ +P+ + E Sbjct: 125 ARARELGMINSRFANPTGLPADDQYVTARDLITLARHLRSTYPELYAIYAEPAFEWNKIF 184 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + +GADG++TG+T ASGF++V + G + + + G R + L Sbjct: 185 QRNRNPLLSMEIGADGIETGYTEASGFSLVGATSHGGRDTLLAVSGLETAGDRASEARKL 244 Query: 260 LSMG 263 L Sbjct: 245 LLWA 248 >gi|254714078|ref|ZP_05175889.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|254716865|ref|ZP_05178676.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261218667|ref|ZP_05932948.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261321835|ref|ZP_05961032.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] gi|260923756|gb|EEX90324.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1] gi|261294525|gb|EEX98021.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1] Length = 396 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K P L+D +G V+ D P PASL KL+TA VVF L++ + L T +S+ Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLITAEVVFEALEKGRTTLETAYPVSEY 96 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 +K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y++ Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQ 216 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+ Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276 Query: 261 SMGFYNKTDRK 271 G D + Sbjct: 277 QWGMTGFDDMR 287 >gi|157691298|ref|YP_001485760.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157680056|gb|ABV61200.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 441 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 157/366 (42%), Gaps = 45/366 (12%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNP 53 ++Q +V I+A+A++ F +S A+ + P L++ +TG ++ + Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+ K+MT Y++ + E K T E SN +K + T+ + Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158 + SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+ Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185 Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV--- 207 +A+DMA+L+ + D P+ + I + + PN N+ + Sbjct: 186 GTGTDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264 + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F Sbjct: 246 VKEYEGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305 Query: 265 YNKTDRKKINYIIKDFYQQNLS------NEVPNISEE---VCTTQKEIINYNTQMKEAKD 315 N T ++ + +N+ EVP +++E V + ++ ++ K Sbjct: 306 KNFTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVKNGDEKSFKAKVNIEKT 365 Query: 316 KESHFI 321 K I Sbjct: 366 KLEAPI 371 >gi|862471|gb|AAC36937.1| ORF4 [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 255 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 15/253 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 Query: 226 FNIVASAIQGDQS 238 FN++ASA+ G + Sbjct: 243 FNLIASAVDGQRR 255 >gi|304394240|ref|ZP_07376163.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130] gi|303293680|gb|EFL88057.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130] Length = 412 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 104/321 (32%), Positives = 159/321 (49%), Gaps = 28/321 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 MR + A L+ P ++ + +D ++G V++ W+PASLTKLM Sbjct: 3 MRSIIAFFLTAWLA--LPAHALPHIS-------VDLDSGRVLSAQQAFDLWHPASLTKLM 53 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA V F ++ + P+ +S NA + PPS + +G+TM L++ALKLL++KSANDI+ Sbjct: 54 TALVAFRAIESGRLTADHPVIVSDNARKAPPSKMGYSRGTTMRLEDALKLLLIKSANDIS 113 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+AES+ + F Q MN + LG++ ++F+N HG+ TTARDMAIL + Sbjct: 114 IALAESVSGSVPAFSQAMNAEAARLGMTGSNFVNPHGLHDRRQVTTARDMAILLRVLHKQ 173 Query: 181 FPQYMHYFQIKGL-----EIKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 +PQY L GK Y + N + F GADG KTGF CASG+N + Sbjct: 174 YPQYKAMLSTPSLLAPSRTKNGKTIQRVYYSYNLLLERFRGADGFKTGFVCASGYNFAGA 233 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP- 290 A + + + A++LG + +R +A L+ GF T + + VP Sbjct: 234 ATRSGRRIAAIVLGRDGQTSRAVDAAKLIEEGFRLPTTTGT------PITELKPNGAVPS 287 Query: 291 ---NISEEVCTTQKEIINYNT 308 N+ +CT Y Sbjct: 288 GPRNMRSVMCTEAARAARYEP 308 >gi|91205746|ref|YP_538101.1| penicillin-binding protein dacF precursor [Rickettsia bellii RML369-C] gi|157827127|ref|YP_001496191.1| penicillin-binding protein dacF precursor [Rickettsia bellii OSU 85-389] gi|91069290|gb|ABE05012.1| Penicillin-binding protein dacF precursor [Rickettsia bellii RML369-C] gi|157802431|gb|ABV79154.1| Penicillin-binding protein dacF precursor [Rickettsia bellii OSU 85-389] Length = 307 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 149/286 (52%), Gaps = 8/286 (2%) Query: 2 RQFL---VIIAMAMLSNIF-PFLSIAETNKLPYYT----LLDTNTGHVIAENYPDHPWNP 53 R+ L + + +++L+ + ++ ++K+P ++D TG V+ + P Sbjct: 3 RKILLPYIFVIISLLTQVSEAKKAVKNSSKVPIPVQTSLVIDAKTGKVLHAHNSQIRIYP 62 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTKLMT YV+F ++ K L + +S A++ PP + G T+T A+ +LIV Sbjct: 63 ASLTKLMTLYVMFELIELGKLSLDKKLLVSAKAAKMPPCKIGLRAGDTITTREAINMLIV 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 KSAND AV +AE++ +EK F MN +K LG+ T+F NA G TTARDMA L Sbjct: 123 KSANDAAVTVAENIRLSEKDFAHLMNIKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKL 182 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + IK FP+Y F +G N + GA+GMKTGF +G+N+V +A Sbjct: 183 TLAIKQKFPKYYPLFSKTSFVFRGNVINGHNKITKNYAGAEGMKTGFHTPAGYNLVTTAS 242 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 + +SLIAV+ G +R++ LL F + + K+ + Sbjct: 243 RNGKSLIAVVTGGRSAGSRDQKMIGLLDQHFNVASAKPKVTLASNN 288 >gi|114706870|ref|ZP_01439770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi HTCC2506] gi|114537818|gb|EAU40942.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi HTCC2506] Length = 387 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 7/250 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 P + D TG V+ E D PASL KLMT VVF L++ T+S+ Sbjct: 29 ETSAPTAFMKDFATGRVLFEKNADMEVEPASLAKLMTIAVVFDELEKGTISRDQTFTVSE 88 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 +A S G +++D+ LK +I++S ND + IAE + + F MN Sbjct: 89 DAWRTGGANSGGSTMFLPLGGEVSVDDLLKGIIIQSGNDATIVIAEGIAGSVDAFADMMN 148 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ +GL+ + F N+ G+ + T RD+ L+ + ++P+ F + G Sbjct: 149 KRAQAIGLTHSRFGNSSGLPHPDSHVTMRDLVTLAEHLIREYPEEYPAFAEESYRYNGIT 208 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + LGADG+KTG T A+G+ +VASA + ++ + N R + S + Sbjct: 209 QNNRNPLLS--LGADGLKTGHTQAAGYGLVASAEADGRRVVFALSRMASSNERARESQRM 266 Query: 260 LSMGFYNKTD 269 + G + + Sbjct: 267 MEFGLQDFEE 276 >gi|308171901|ref|YP_003918606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM 7] gi|307604765|emb|CBI41136.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus amyloliquefaciens DSM 7] gi|328551709|gb|AEB22201.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens TA208] Length = 443 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 156/372 (41%), Gaps = 38/372 (10%) Query: 2 RQFLV-IIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 +Q LV ++ +A+ + F +S AE +++ ++G ++ D Sbjct: 7 KQMLVSLVVLALTATCFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109 AS+TK+MT Y++ +KE K T E SN +K T+ + Sbjct: 67 ASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQ 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY----- 164 + + SAN A+A+AE L TE KFV MN +K LG++ F N+ G+V + Sbjct: 127 AMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKELGMTNYDFKNSTGLVNEDLHGKQPQ 186 Query: 165 ---------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV--- 207 +A+DMA+L+ R+ TD+P+ + I + + PN N+ + Sbjct: 187 GEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264 + G DG+KTG T ++G ++A + +I V+L A R + +L F Sbjct: 247 VSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKKMLDYAF 306 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD-KESHFIDF 323 + K + + ++V + ++ + + K+ K +D Sbjct: 307 NSNFSMKDLYPEGSQVKGHKTIDVDKGKDKQVDIVTDKALSIPVKSGDEKNYKAEVTLDK 366 Query: 324 EKITLLKNKITK 335 ++IT K TK Sbjct: 367 KEITAPVKKGTK 378 >gi|229059652|ref|ZP_04197030.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603] gi|228719665|gb|EEL71264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603] Length = 317 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 130/262 (49%), Gaps = 12/262 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI +N + PAS++K+MTAY+V + K Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS+ +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKISEKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D++ L++ + D+P+ + ++ Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + NTN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 +G + R + L+S F Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314 >gi|222148588|ref|YP_002549545.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] gi|221735574|gb|ACM36537.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Agrobacterium vitis S4] Length = 411 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 8/281 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L++ TG V+ E D P+ ASL+K+M A VV LK + L+ +S+ Sbjct: 55 ATEAKQVLLIEAETGSVLFEKNSDQPFTSASLSKMMVAEVVLDALKSGRLTLSQDFPVSE 114 Query: 85 NASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 A + S + ++ LK ++V+ AND + +AE + +E+ FV+ MN Sbjct: 115 FAWRTGGAPSRTATMFAAVRSRVPVEALLKGVMVQMANDACLILAEGMAGSEQGFVKLMN 174 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 + LGL +HF NA G+ G+ + RDM L+ +K+++P + + E Sbjct: 175 ERAAALGLKDSHFANATGLPDPGNKVSLRDMITLAQALKSNYPDFYALYAQPDFEWNKIF 234 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G G DG+ GF G++IVASA Q L + G+ +R + +A Sbjct: 235 QRNRNRLLGQSPGVDGLAAGFADGEGYSIVASAQQNGVRLYLGLAGSESDKSRQEDAAKA 294 Query: 260 LSMGFYNKTDRKK---INYIIKDFYQQNLSNEVPNISEEVC 297 L+ GF R+ I + +VP +S + Sbjct: 295 LAWGFSAFEKRRLFEAGQVIGEASVYGGEPAQVPLVSPQPV 335 >gi|228956454|ref|ZP_04118252.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229039918|ref|ZP_04189684.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|229107699|ref|ZP_04237337.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|229125530|ref|ZP_04254564.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|229142819|ref|ZP_04271263.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|229148422|ref|ZP_04276680.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|296500847|ref|YP_003662547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|228635031|gb|EEK91602.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus m1550] gi|228640633|gb|EEK97019.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-ST24] gi|228657914|gb|EEL13718.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus BDRD-Cer4] gi|228675739|gb|EEL30945.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock1-15] gi|228727408|gb|EEL78599.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus AH676] gi|228803211|gb|EEM50031.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296321899|gb|ADH04827.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 415 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 28/328 (8%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63 Query: 74 AMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 I +S+ A + SN + G + T+ + + + SAN +A+AE++ Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175 E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+ Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADGMKTGFTCASGFN 227 + D+P+ + +I E + +K N NW + + G DG+KTG T +G Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + + I+V++ R + L GF N ++ Y + + Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQM--YKKGSSVKGQETV 301 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKD 315 V N ++ Q + K +KD Sbjct: 302 RVENAKDKDVAVQTKQAISLPVPKGSKD 329 >gi|52078501|ref|YP_077292.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52783865|ref|YP_089694.1| DacA [Bacillus licheniformis ATCC 14580] gi|319648529|ref|ZP_08002744.1| DacA protein [Bacillus sp. BT1B_CT2] gi|52001712|gb|AAU21654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus licheniformis ATCC 14580] gi|52346367|gb|AAU39001.1| DacA [Bacillus licheniformis ATCC 14580] gi|317389377|gb|EFV70189.1| DacA protein [Bacillus sp. BT1B_CT2] Length = 441 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 153/367 (41%), Gaps = 35/367 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 ++I+A A+ F +S A+ L++ ++G ++ D AS+ Sbjct: 10 IMLIVAFAVTVGAFSPMSTAKAANDPINVDAKAAILVEASSGKILYSKNADQRLPVASMA 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIV 113 K+MT Y++ + E K T E SN +K + T+ + + Sbjct: 70 KMMTEYLLLEAIHEGKVKWDQKYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQATAI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------V 159 SAN A+A++E + +E KFV+ MN +K LG+ F+NA G+ Sbjct: 130 YSANAAAIALSEIVAGSESKFVELMNKKAKELGMKDFKFVNATGLENKDLHGKHPSGTNA 189 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVG----TF 210 + +ARDMA+L+ + +D+P+ + I + + PN N+ + + Sbjct: 190 NEENEVSARDMALLADHLVSDYPEILDTASIAKTKFRKGTDDEMDMPNWNFMLKGLVQQY 249 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--NTRNKVSASLLSMGFYNKT 268 G DG+KTG T ++G A+A + +I+V+L A R K + +L F N T Sbjct: 250 EGVDGLKTGSTDSAGSCFTATAERNGMRVISVVLNAKGDLHTARFKETKKMLDYAFENFT 309 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 ++ + + ++ + +E T+K +E K ++ +++T Sbjct: 310 MKEFYAKGAQVKGNETVTVDKGKETEVGIVTEKAFSMPVKNGEEKNYKAKVTLNKDELTA 369 Query: 329 LKNKITK 335 K K Sbjct: 370 PVKKGEK 376 >gi|254436605|ref|ZP_05050099.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] gi|198252051|gb|EDY76365.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter antarcticus 307] Length = 399 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 10/285 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK---- 73 P + + +LD +TG V+ E D P PAS++KLMT Y+ F + Sbjct: 21 PVSAQTFDTRAGAAYVLDHSTGIVLLEKNADDPLPPASMSKLMTLYMAFEAVNPLNGQDP 80 Query: 74 -AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA--VAIAESLCKT 130 + +S++ +Y S + +++ ++ +IV S ND + +A A S T Sbjct: 81 ILTFDDVLPVSQHCMDYTGSTMFLDTTDRVRVEDLVRGIIVLSGNDASCVIAEALSRDGT 140 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E F Q M ++ +G+ + F N++G G+ T RD+ L+ R+ TD+P Y F Sbjct: 141 EAGFAQQMTERAQQIGMMNSSFANSNGWPAAGNRVTMRDLGTLADRLITDYPTYYPLFAE 200 Query: 191 KGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 + + G+ N N + +GADG+KTG T +GF +V SA QGD+ +I V+ G Sbjct: 201 REFDYDGEHLANIRNRNPLLALNIGADGLKTGHTREAGFGLVGSAKQGDRRIIFVVTGIE 260 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 R + +++ F T R + + E P + Sbjct: 261 TAQERAAETERIVNWAFRQFTQRDIARGGTQIAQAEVWRGEQPVV 305 >gi|121533591|ref|ZP_01665418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] gi|121307582|gb|EAX48497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus carboxydivorans Nor1] Length = 384 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 18/248 (7%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D TG V+ + PAS TK++TA + L + +S A+ Sbjct: 33 AAVLMDAKTGQVLYDKDMHKRSAPASTTKILTAIIAIES-----GRLDEVVRVSPRAAGT 87 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ G T+TL + L+++S ND AVAIAE L + + F MN ++ +G Sbjct: 88 GGSSMNLYAGQTLTLRELVTGLMLRSGNDAAVAIAEHLAGSVEAFAAVMNKRAQEIGAVN 147 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKY 200 +HF+N HG+ GH++TA D+A L+ T P + K I + + Sbjct: 148 SHFVNPHGLTAPGHFSTAFDLAWLARYALT-NPVFGQIVSTKETTIEWLDRSGRERDRNL 206 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + ADG+KTG T +G +VASA +G+Q LIAV+L + R S LL Sbjct: 207 RNTNKLLWMLEEADGVKTGTTSEAGPCLVASATRGNQRLIAVVLH---DHARWYNSMMLL 263 Query: 261 SMGFYNKT 268 GF N Sbjct: 264 KHGFDNYD 271 >gi|295696423|ref|YP_003589661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus tusciae DSM 2912] gi|295412025|gb|ADG06517.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus tusciae DSM 2912] Length = 366 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 137/322 (42%), Gaps = 25/322 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNP 53 M ++ +A+ +FP + A N Y ++D +G V+ E D Sbjct: 1 MAGRVLAGFVAVTMILFPGVGAAAANSPDLYGISAQGAAVVDVGSGRVLYEKNGDQMMPI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASLTK++T ++ L +TIS NA+ S+ + G T TL + + +++ Sbjct: 61 ASLTKIVTGWLAVES-----GRLDERVTISANAARKEGSSVYLRAGETYTLRDLVYAMML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND A A+AE L +E +F MN ++ +GL HF N HG+ GH +A D+A + Sbjct: 116 RSGNDAATAVAEHLAGSEARFAALMNAKAREMGLRHVHFANPHGLDAPGHGASAVDLARM 175 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 + + P++ + K + + N N + + GADG+KTG+T +G Sbjct: 176 TAKALQ-NPEFAAVVRTKYHRMPWPGEAWDRVMRNKNKMLWRYPGADGVKTGYTKRAGRC 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + +SA + ++ V+L D +A L F + + Sbjct: 235 LASSATRDGHQVVVVVLKDPDD---WADTARLFDHVFQTY---EWVPVQAGPASVPVRGG 288 Query: 288 EVPNISEEVCTTQKEIINYNTQ 309 VP + V + I + + Sbjct: 289 VVPTVPVRVQGPDRFPIRADEK 310 >gi|13470655|ref|NP_102224.1| penicillin binding protein [Mesorhizobium loti MAFF303099] gi|14021397|dbj|BAB48010.1| penicillin binding protein [Mesorhizobium loti MAFF303099] Length = 388 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 5/252 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 K ++D +TG V+ D P PAS+ KLMT VVF+ +K + L +S+ Sbjct: 31 ETKATQAFMIDADTGTVLFSKDADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSE 90 Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 NA S K S + L++ ++ + V++AND + IAE + +E F M Sbjct: 91 NAWRKGGAPSGTSTMFAKLKSAIRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMT 150 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ +GL + F+N+ G+ G TT R++A L+ + D+P + Y+ +K Sbjct: 151 ERARQIGLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYYGLKDFTWNKIS 210 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N + +GADG+ G + +GF IVAS +I + G + R + + L Sbjct: 211 QKNRNPLLAMDIGADGLAVGASEVAGFGIVASVSHNGTRVIMAMNGLANDKERAEEARKL 270 Query: 260 LSMGFYNKTDRK 271 L G + + Sbjct: 271 LDWGARSFEKTE 282 >gi|228937316|ref|ZP_04099964.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950561|ref|ZP_04112697.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228970202|ref|ZP_04130863.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976772|ref|ZP_04137186.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|229067777|ref|ZP_04201096.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|229077286|ref|ZP_04209969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|229188298|ref|ZP_04315349.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228595166|gb|EEK52934.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus ATCC 10876] gi|228706009|gb|EEL58314.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus Rock4-2] gi|228715330|gb|EEL67187.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus F65185] gi|228782934|gb|EEM31098.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis Bt407] gi|228789503|gb|EEM37421.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228809104|gb|EEM55587.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228822341|gb|EEM68321.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937806|gb|AEA13702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 415 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 28/328 (8%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63 Query: 74 AMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 I +S+ A + SN + G + T+ + + + SAN +A+AE++ Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175 E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+ Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADGMKTGFTCASGFN 227 + D+P+ + +I E + +K N NW + + G DG+KTG T +G Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + + I+V++ R + L GF N ++ Y + + Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQM--YKKGSSVKGQETV 301 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKD 315 V N ++ Q + K +KD Sbjct: 302 RVENAKDKDVAVQTKQAISLPVPKGSKD 329 >gi|229176613|ref|ZP_04304020.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] gi|228606860|gb|EEK64274.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus 172560W] Length = 415 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 28/328 (8%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63 Query: 74 AMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 I +S+ A + SN + G + T+ + + + SAN +A+AE++ Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175 E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+ Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADGMKTGFTCASGFN 227 + D+P+ + +I E + +K N NW + + G DG+KTG T +G Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + + I+V++ R + L GF N ++ Y + + Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQM--YKKGSSVKGQETV 301 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKD 315 V N ++ Q + K +KD Sbjct: 302 RVENAKDKDVAVQTKQAISLPVPKGSKD 329 >gi|323484906|ref|ZP_08090261.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum WAL-14163] gi|323693651|ref|ZP_08107850.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] gi|323401787|gb|EGA94130.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum WAL-14163] gi|323502265|gb|EGB18128.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum WAL-14673] Length = 404 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 31/297 (10%) Query: 1 MRQFLVIIAMAML--------------------SNIFPFLSIAETNKLPYYTLLDTNTGH 40 M++ +I M+ ++ + + P L++ +TG Sbjct: 1 MKRLTAVILTIMMVLQTGLYSVYASVPEIPAEAASAMVQAADGPEIQAPDAILIEASTGT 60 Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100 VI E D NPAS+TK+MT ++F LK K L + S +A S ++G Sbjct: 61 VIYEKNADEARNPASVTKIMTLLLIFDALKSGKIHLDDEVVTSAHAKSMGGSQVFLEEGE 120 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 T++ +K +++ S ND +VA+AE + E FV+ MN +K LG+ +F + G+ Sbjct: 121 IQTVETLIKCIVIASGNDASVAMAEYIGGDEATFVKMMNERAKGLGMENANFEDCCGLTD 180 Query: 161 H-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFL 211 H +ARD+A+++ + T +P+ +Y I I NTN + Sbjct: 181 STTHAMSARDIALMTKELITKYPEIFNYSTIWMENITHVTKQGTKEFGLSNTNKLLKMAT 240 Query: 212 G--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G+KTG T + + + A+A + LIAVIL A D R + +LL+ G+ N Sbjct: 241 NFEVTGLKTGSTSLAKYCLSATARKDGVELIAVILAAPDFKARFGDALTLLNYGYAN 297 >gi|304405771|ref|ZP_07387429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304345014|gb|EFM10850.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 437 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 42/325 (12%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ TG V+ E D PAS+TK+MT Y+V +K + T ++ S A+ Sbjct: 55 AKAAILMEPTTGQVLYELNADEALPPASMTKMMTEYIVLEEIKAGRLTWDTVVSTSAEAA 114 Query: 88 EYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145 P S +G T+ + V SA+D +A+A + + FV MN T++ L Sbjct: 115 TVPPDGSQVYLAEGEKHTVKELYIAMAVGSASDATIALAVQIGGSTAGFVDKMNETAQKL 174 Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---N 202 GL++ HF G+ + +ARDMA L+ I + P+++ Y I + + + N Sbjct: 175 GLTSAHFTGPSGL-EETTVISARDMAKLASTIILNDPEFLTYSSIPRYKFRERDQGELIN 233 Query: 203 TNWAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NW +G+ + G DGMKTG+ A+G+ + ++V++ + Sbjct: 234 YNWMLGSNKNSEELKSFAYPGVDGMKTGYIGAAGYCFTGTVEVNGLRYVSVVMNTKTKQA 293 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT-QM 310 R + +A L G+ + + + + E+ + T ++ Sbjct: 294 RFRETAKLYDFGYASFE------------------------KKTIVAPKSEVESVKTVKI 329 Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335 + K K I ++ L K T+ Sbjct: 330 TKGKSKSVPVITGTDVSFLVKKGTE 354 >gi|222147779|ref|YP_002548736.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium vitis S4] gi|221734767|gb|ACM35730.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) [Agrobacterium vitis S4] Length = 442 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 142/261 (54%), Gaps = 4/261 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M + L+ +++ + ++ +A + +L LLD TG VIA D P +PASLTK+M Sbjct: 1 MSRTLIALSLFVSISMMASPVLAGSAQL----LLDARTGRVIASENADMPNHPASLTKMM 56 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+VF ++ +P+ SK AS PP+ K G +T+ A+ ++ SAND A Sbjct: 57 TIYMVFDAIRRGTLSWDSPVPFSKYASSRPPTKLRLKPGEEITVREAVLGMVTLSANDAA 116 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 A+AE L TE+ F M ++ LG+ T F+NA G+ TTARDM+ L + D Sbjct: 117 AAMAEKLGGTEENFAAMMTAKARQLGMPNTTFVNASGLPDDRQITTARDMSTLGVALLRD 176 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+ F + +G+ N + + G DG+KTG+T ASG+N+V++ G + +I Sbjct: 177 FPRDYALFSTRSFAFRGRTINGHNNLMYRYKGMDGIKTGYTNASGYNLVSAVADGKRRVI 236 Query: 241 AVILGALDRNTRNKVSASLLS 261 VI+G +R+ + A L++ Sbjct: 237 GVIMGGRSGASRDNLMAQLIT 257 >gi|229170862|ref|ZP_04298467.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] gi|228612597|gb|EEK69814.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus cereus MM3] Length = 417 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 137/333 (41%), Gaps = 28/333 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + SN A + L++ N+G ++ + D + AS+TK+M+ Y+V Sbjct: 1 MLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEA 60 Query: 69 LKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + K I +S+ A + SN + G T+ + + + SAN +A+A Sbjct: 61 VDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGIYTVKELYEAMAIFSANGATIALA 120 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDM 170 E++ E FV+ MN+ SK LGL F+N+ G+ + +A+D+ Sbjct: 121 EAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDV 180 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADGMKTGFTC 222 A L+ + D+P+ + +I E + +K N NW + + G DG+KTG T Sbjct: 181 ATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTP 240 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 +G + + I+V++ R + L GF N ++ Y + Sbjct: 241 EAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQM--YKKDSSVK 298 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + V N ++ Q + K +KD Sbjct: 299 GQETVRVENAKDKDVAVQTKQAVSLPVPKGSKD 331 >gi|320354031|ref|YP_004195370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus DSM 2032] gi|320122533|gb|ADW18079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus DSM 2032] Length = 374 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 8/254 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P I++ + +++ ++G V+ E+ D PAS+ KLM YV+ +++ L Sbjct: 24 PLAVISQDPYV-SALVIEADSGKVLFESNADVKVYPASVLKLMDLYVILDRIEQGALKLD 82 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 + ++ AS+ S +++ + L+V+SAND AVA+A + +++ FV Sbjct: 83 EMVPVTVEASKTGGSQVYLDPKEQFSVEELIYALMVQSANDAAVALATHIAGSKEGFVAL 142 Query: 138 MNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHY--FQIK 191 MN ++ LG+ + F + HG+ Q TTARD+AIL + P+ + Y Q + Sbjct: 143 MNQKAQALGMKHSVFHSVHGLPPSEGQEPDVTTARDLAILCRELAKR-PEALKYTGTQTR 201 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 G N N + G DG KTG+ A+GF+I A+A +G +I +++G+ DR Sbjct: 202 GFREDKFIMRNHNKLLTQVPGCDGFKTGYYQAAGFSIAATAKKGGVRIITLVMGSKDRKV 261 Query: 252 RNKVSASLLSMGFY 265 R+ + LL+ GF Sbjct: 262 RDAKAVELLAKGFA 275 >gi|262375440|ref|ZP_06068673.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145] gi|262309694|gb|EEY90824.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145] Length = 437 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 157/324 (48%), Gaps = 26/324 (8%) Query: 1 MRQFLVIIA-MAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ + +IA ++ + F + + E+ + +T+LD+ +G VIAE+ D PAS Sbjct: 1 MKYIISLIAVFSLFISAFSHAALLNIVPESVEAEAWTILDSQSGQVIAEHNADVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ ++ K +T + + S K+G +++D L LI+ Sbjct: 61 LTKMMVAYIALKEIEAGKLDKNEVLTATSVVKTVMWDESQMYLKEGDLISVDQLLAGLII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + +FV+ MN +K LG+ T+F N G+ HY+TA D+A L Sbjct: 121 MSANDAAVTLAEKISGGIPQFVERMNQEAKALGMQHTNFQNPAGITMPEHYSTAADLARL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 S + + P Y++Y + + TN + DG+KTGFT A+G+N+ +A Sbjct: 181 SMAVVNETPDYLYYSKQPSFTYNQHFHRATNRVLQVDPTVDGLKTGFTRAAGYNLALTAN 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + ++ LI V+LG R +VS L+++ + + I Q L Sbjct: 241 RVTADFEMPNRRLIVVVLGTNSAAKRAEVSHKLMNLAYAYTRNEVAI-------KDQQLL 293 Query: 287 NEVPNISE-----EVCTTQKEIIN 305 E+P I +V T Q +II Sbjct: 294 AELPVIKSTLKMFKVQTKQPQIIT 317 >gi|56963593|ref|YP_175324.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] gi|56909836|dbj|BAD64363.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16] Length = 380 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 27/340 (7%) Query: 1 MRQFLV------IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ +V + S + L++ ++G V+ P A Sbjct: 1 MKKTIVHCLLVGFLFFFQSSEVLANEPATFPVSGQAAILMEQSSGRVLYSKNEHQPLKIA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S+TK+MTA + L +T+SK A S+ G +TL + + L+++ Sbjct: 61 SITKIMTAILAIES-----GKLDETVTVSKRAEGTEGSSLYLVAGEKLTLRDLVYGLMLR 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAIL 173 S ND A+AIAE + + + FV MN ++ +G+S T F N HG+ H ++A DMA+L Sbjct: 116 SGNDAAIAIAEHVGGSVEGFVFLMNEKAEEIGMSNTLFRNPHGLDTDEDHLSSAYDMALL 175 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 + +Y K KG K + N N + + + G KTG+T + +V Sbjct: 176 TQ-YAMGNEEYRDISSTKDYRSKGDKVRVFHNKNRLLTEKYSYSTGGKTGYTKLAKRTLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----DRKKINYIIKDFYQQN 284 ++A + LIAV L A D + + GF + + + K+ + FY+ N Sbjct: 235 STASKDGLDLIAVTLNAPDD---WDDHMHMFNWGFEHYSLERLVSKGKLKSKVDPFYEGN 291 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 L VP TT+++ + + K F D E Sbjct: 292 LY--VPYDVVYPLTTEEKSQLQSALTLKNPPKRGKFTDQE 329 >gi|212702629|ref|ZP_03310757.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098] gi|212673901|gb|EEB34384.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098] Length = 285 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 +++ + G V+ E+ P+ PASLTK+MT YVV +K + T I + A Sbjct: 38 VMINLSNGKVLYEHNPNLSIPPASLTKVMTMYVVMDRIKLGRLKRNTSIRVHPTA-RVGG 96 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 S+ + +T+D L + V S ND A+AI++ + + F MN+ ++ LG++ T Sbjct: 97 SSMRLRPRQKVTVDQLLTGMAVASGNDAAMAISQHISGNSRNFTHLMNHKARQLGMTRTV 156 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 F N G+ G TTARDMA L+ PQ M Y ++ G+ TN +G Sbjct: 157 FKNPTGLPAAGQRTTARDMATLARAYLRSHPQAMRYHSLRSFRFNGRTLGATNTMLG-IP 215 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+T ASG+NI+ +A +G L+ V++G R R+ V+ SL+ GF + Sbjct: 216 GVDGLKTGWTVASGYNIIVTARRGKTRLLVVVMGGRSRAARDMVAHSLIEAGFKAPASPQ 275 Query: 272 KINYIIK 278 ++ ++ Sbjct: 276 QVRKRMR 282 >gi|75675891|ref|YP_318312.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] gi|74420761|gb|ABA04960.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter winogradskyi Nb-255] Length = 587 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 134/248 (54%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91 ++D N+G ++ PD +PASLTK+MT Y++F L + L + + +S A+ P Sbjct: 59 IVVDANSGATLSSTSPDSLRHPASLTKMMTLYMLFERLDAGRIGLDSEMRVSARAAAQNP 118 Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151 + + G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++ T Sbjct: 119 TKLGLRPGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALGMTRTV 178 Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211 + NA G+ TTARD A L ++ FP+Y YF +G+ N VG+ Sbjct: 179 YRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNRLVGSVD 238 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ LL+ R+ Sbjct: 239 GVDGIKTGYIRASGFNLVTNLKRGNRHLVGVVLGGRSGGSRDATMRKLLAENLDKAATRR 298 Query: 272 KINYIIKD 279 + I + Sbjct: 299 TVAAIAES 306 >gi|163939795|ref|YP_001644679.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|229132823|ref|ZP_04261668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST196] gi|163861992|gb|ABY43051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|228650650|gb|EEL06640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 317 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI +N + PAS++K+MTAY+V + K Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D++ L++ + D+P+ + ++ Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + NTN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 +G + R + L+S F Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314 >gi|126462962|ref|YP_001044076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|332558995|ref|ZP_08413317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] gi|126104626|gb|ABN77304.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17029] gi|332276707|gb|EGJ22022.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides WS8N] Length = 389 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 12/281 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R FL +I LS + ++A + + D T V+ + P PAS++KLMT Sbjct: 5 RLFLALI----LSLVTALPAMAFDTRARAAWVYDVTTHTVLLDKNAHEPLPPASMSKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 ++F L++ + + T +S A + S ++ T++ + +IV S ND V Sbjct: 61 LNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACV 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L TE F + M +K LG++ + F N+ G GH + D+ IL+ R+ +F Sbjct: 121 VVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEF 180 Query: 182 PQYMHYFQIKGLEIKGK---KYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASA-I 233 P++ YF K + N N + ADG+KTG T +G+ +V SA Sbjct: 181 PEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQ 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + ++ V+ G R + +++ F + + Sbjct: 241 KDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQFVQKTLVT 281 >gi|229542251|ref|ZP_04431311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] gi|229326671|gb|EEN92346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] Length = 468 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 142/351 (40%), Gaps = 44/351 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 FL ++ A + P A+ ++D + G ++ E + AS++K+M Sbjct: 41 FLALLLTAGVVQQVPKTVHAQDQLDIHAKAAIIVDADNGQILYEKNANQALGIASMSKMM 100 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 T Y++ + EKK +TIS A SN +KG T+ + + + SA Sbjct: 101 TEYLLLKAIHEKKVSWNQKVTISDYAYRISQNRALSNVPLRKGEKYTVKELFQAMAIYSA 160 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------- 162 N +AIAE+L TEK ++ MN +K GL+ F+NA G+ Sbjct: 161 NGATIAIAETLGGTEKNYLNMMNKQAKAFGLTDYKFVNATGLNNEDLQGMQPEGTGRTEE 220 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTF----LGA 213 + +A+ +A +++ + D+P+ + ++ + N NW + + G Sbjct: 221 NLVSAKSVAKIAYHLIHDYPEILQTTSTAKMKFRAGTDDEIAMQNWNWMLPSLVYGRQGV 280 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNK 267 DG+KTG T +G+ +A Q +I V+L A D N +R V+ L+ F N Sbjct: 281 DGLKTGNTDNAGYCFTGTAKQNGMRIITVVLHAEDANGNSTIKSRFDVTNKLMDYAFSNF 340 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318 T+ K Y + + + Q ++ K+ E Sbjct: 341 TE--------KTLYPKGYQVKKTVTVKSGKEKQASVVTKAPLKVAVKNGEG 383 >gi|319767311|ref|YP_004132812.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC52] gi|317112177|gb|ADU94669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC52] Length = 460 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 27/323 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L++ ++G V+ AS+TK+MTA + + +T+S Sbjct: 108 DGVSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIES-----GKMDDTVTVS 162 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + Sbjct: 163 ARAVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAA 222 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EI 195 +G+ T F N HG+ HY+TA DMA+L ++ K E Sbjct: 223 EIGMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMK-NKEFRRISGTKVYRAPAPPGED 281 Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N N + + + G KTG+T + +V +A +G LIAV L A D Sbjct: 282 GARVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WN 338 Query: 255 VSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIIN 305 ++ GF + + + ++ I FY+ L P +E Q ++ Sbjct: 339 DHIAMYEYGFSHYHIAKVSSERVVDKISDPFYRGRLQAVRDLRYPVTDKEESGLQVKVYL 398 Query: 306 YNTQMKEAKDKESHFIDFEKITL 328 + + K E + K L Sbjct: 399 LKPRKEWKKYPERAPTEVGKAVL 421 >gi|260575562|ref|ZP_05843560.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] gi|259022205|gb|EEW25503.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2] Length = 385 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 6/266 (2%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M L+ + + A + + D T V+ + D PAS++KLMT ++F Sbjct: 5 LMLFLALLTALPAQAFDTQASNAWVYDLTTHTVLMDKNADVAVPPASMSKLMTINMLFEA 64 Query: 69 LKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 L++ + + T +S A S ++ T++ + +I+ S ND V +AE Sbjct: 65 LRDGRVAMDTTFAVSTRAKGMTALGGSTMFLQETDRPTVEQLIHGMIINSGNDACVVVAE 124 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L +E+ F + M+ ++ LG++ +HF NA G+ H + D+ +L+ R+ +FP+Y Sbjct: 125 GLAGSEEAFAEQMSQRAQALGMTNSHFANASGMPDPSHRMSMHDLGLLATRLIEEFPEYY 184 Query: 186 HYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242 F + N N + +GADG+KTG T +G+ +V SA+QG++ ++ Sbjct: 185 PVFAETEYNYADRAVENRFNRNPLLKLNIGADGLKTGHTTEAGYGLVGSAVQGNRRIVFA 244 Query: 243 ILGALDRNTRNKVSASLLSMGFYNKT 268 I G R + S +++ F Sbjct: 245 ITGLPSETARAEESERIVNWAFRQFA 270 >gi|261403951|ref|YP_003240192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] gi|261280414|gb|ACX62385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. Y412MC10] Length = 472 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 26/272 (9%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 ++ L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +NA Sbjct: 80 EVSSAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENA 139 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S +G T++ + V SAND VA+AE + +E +FV MN+T+K +G Sbjct: 140 EKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEAEFVTMMNDTAKKMG 199 Query: 147 LSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 L F+N+ G+ +A D A+L+ I D P + + I+ + Sbjct: 200 LKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFAKFTAIQSHK 259 Query: 195 IKGKKYP---NTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + N NW + + G DG+KTG T A+G+ +A + LI Sbjct: 260 FRPRDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLI 319 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +V++G R K + +L GF N ++ Sbjct: 320 SVVMGTKSEGARFKETKKVLDYGFDNFEVKEV 351 >gi|221639986|ref|YP_002526248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides KD131] gi|221160767|gb|ACM01747.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter sphaeroides KD131] Length = 389 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 12/281 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R FL +I L + ++A + + D T V+ + P PAS++KLMT Sbjct: 5 RLFLALI----LGLVTALPALAFDTRARAAWVYDVTTHTVLLDKNAHEPLPPASMSKLMT 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 ++F L++ + + T +S A + S ++ T++ + +IV S ND V Sbjct: 61 LNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACV 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L TE F + M +K LG++ + F N+ G GH + D+ IL+ R+ +F Sbjct: 121 VVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEF 180 Query: 182 PQYMHYFQIKGLEIKGK---KYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASA-I 233 P++ YF K + N N + ADG+KTG T +G+ +V SA Sbjct: 181 PEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQ 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + + ++ V+ G R + +++ F + + Sbjct: 241 KDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQFVQKTLVT 281 >gi|329930179|ref|ZP_08283792.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5] gi|328935201|gb|EGG31682.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5] Length = 472 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 26/272 (9%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 ++ L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +NA Sbjct: 80 EVSSAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENA 139 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S +G T++ + V SAND VA+AE + +E +FV MN+T+K +G Sbjct: 140 EKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHIAGSEAEFVTMMNDTAKKMG 199 Query: 147 LSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 L F+N+ G+ +A D A+L+ I D P + + I+ + Sbjct: 200 LKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFARFTAIQSHK 259 Query: 195 IKGKKYP---NTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + N NW + + G DG+KTG T A+G+ +A + LI Sbjct: 260 FRPRDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLI 319 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +V++G R K + +L GF N ++ Sbjct: 320 SVVMGTKSEGARFKETKKVLDYGFDNFEVKEV 351 >gi|228898767|ref|ZP_04063051.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] gi|228860859|gb|EEN05235.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 4222] Length = 415 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 28/328 (8%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63 Query: 74 AMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 I +S+ A + SN + G + T+ + + + SAN +A+AE++ Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175 E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+ Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADGMKTGFTCASGFN 227 + D+P+ + +I E + +K N NW + + G DG+KTG T +G Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + + I+V++ R + L GF N ++ Y + + Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQM--YKKGSLVKGQETV 301 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKD 315 V N ++ Q + K +KD Sbjct: 302 RVENAKDKDVAVQTKQAISLPVPKGSKD 329 >gi|86356590|ref|YP_468482.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86280692|gb|ABC89755.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 419 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 4/253 (1%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 L+ P ++A + L +LD TG V+A D +PASLTK+MT Y+ F Sbjct: 1 MTVTLAVSAPLAALAGSASL----ILDARTGKVLASENADTLNHPASLTKMMTLYLTFEA 56 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L Sbjct: 57 LKRGKIAWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 +E F + M ++ LG+S T F+NA G+ TTARDM+ L + +FP F Sbjct: 117 GSESGFARMMTAKARQLGMSRTVFVNASGLPNSSQVTTARDMSTLGVALMKNFPNEYRLF 176 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++ V+LG Sbjct: 177 SMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRT 236 Query: 249 RNTRNKVSASLLS 261 +R+ +LL Sbjct: 237 ARSRDARMEALLD 249 >gi|228905810|ref|ZP_04069709.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] gi|228853818|gb|EEM98576.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis IBL 200] Length = 424 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 143/340 (42%), Gaps = 31/340 (9%) Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 ++ +A ++ SN A + L++ N+G ++ + D + AS+TK+M+ Sbjct: 1 MITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSIASMTKMMS 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSAN 117 Y+V + + K I +S+ A + SN + G + T+ + + + SAN Sbjct: 61 EYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGH 163 +A+AE++ E FV+ MN+ SK LGL F+N+ G+ + Sbjct: 121 GATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEEN 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAV----GTFLGADG 215 +A+D+A L+ + D+P+ + +I E + +K N NW + + G DG Sbjct: 181 KMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 +KTG T +G + + I+V++ R + L GF N ++ Y Sbjct: 241 LKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQM--Y 298 Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + V N ++ Q + K +KD Sbjct: 299 KKGSSVKGQETVRVENAKDKDVEVQTKQAISLPVPKGSKD 338 >gi|299542091|ref|ZP_07052407.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus fusiformis ZC1] gi|298725406|gb|EFI66054.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus fusiformis ZC1] Length = 443 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 157/370 (42%), Gaps = 49/370 (13%) Query: 13 LSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + P + AET+ + L+D ++G ++ E D AS+TK+MT Y++ + Sbjct: 21 IFAGIPAKANAETDLGLTVDAAILIDADSGKILFEQNADTSLGIASMTKMMTEYLLLDAI 80 Query: 70 KEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 K ++ SN ++ + T+ + + + SAN VAIAE Sbjct: 81 DAGKVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 140 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMA 171 ++ +E +F++ MN ++ LGL F+NA G+ + + A+ +A Sbjct: 141 TIAGSETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPSGTGPEDENVMPAKSVA 200 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV----GTFLGADGMKTGFTC 222 L++ + D P+ + +I + K N N+ + + G DG+KTG T Sbjct: 201 KLAYHLLKDHPKVLETSKIAKKTFREGTEDAIKMSNWNFMLPGLVYEYQGVDGLKTGTTN 260 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNKTDRKKI--N 274 +G +A + LIAV++ A+D R +A L + GF + ++ + N Sbjct: 261 FAGHCFTGTAERNGTRLIAVVMKAVDAKGQGSYEARFDATAKLFNYGFSQFSKQEILPGN 320 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKESHFIDFEKI 326 Y K+ ++ ++V KE I++ + + DK+S D +K Sbjct: 321 YTFKNQKTVKVTK---GKEDKVSIAVKEPISFMIKSSDKDLYKPTLVLDKKSLEADVKKD 377 Query: 327 TLLKNKITKK 336 T++ + ++ Sbjct: 378 TVVGKVVIER 387 >gi|330838298|ref|YP_004412878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|329746062|gb|AEB99418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 379 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ TG V+ E D PAS+TK+MT + ++ +A L +TI+ A+ Sbjct: 132 ADAAILMNARTGEVLYEKNGDKREYPASMTKMMTCIL---SVESGRADL--AVTITPFAA 186 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + + G L + + +++ S N A+AIAE+L +E +F MN ++ +G Sbjct: 187 DVETTRV--RPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGA 244 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 THF+N +G+ HY+TA D+A+++ P++ K I Sbjct: 245 FHTHFVNPNGMPDANHYSTAHDIALIA-AYGLRNPEFRKIVGTKASTIYYLQPAGYKTYC 303 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A+LL Sbjct: 304 ENTNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALL 363 Query: 261 SMGFY 265 GF Sbjct: 364 DYGFS 368 >gi|251797290|ref|YP_003012021.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] gi|247544916|gb|ACT01935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] Length = 425 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 37/326 (11%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAE------------------------TNKLPYYTLL 34 MR+ L+ + +L + P AE T L+ Sbjct: 1 MRRLPGLIAMMFIILVLLAPVPVFAEEALQAPDEEQIEQPADQLAEQLPETPHSEAAILI 60 Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 D +G V+ PAS+TK++T +V ++ T +T+SK A + Sbjct: 61 DAKSGAVLFAKNETERLYPASITKIVTGIIVLE-----QSNPTDIVTVSKTARGEDGTRI 115 Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154 +G + + ++ +++ S ND A AIAE + T+++F + MN + LGL T+F+N Sbjct: 116 YLAEGEQKPMLDLIEGMLINSGNDAATAIAEHIDGTKEQFAERMNEFVRKLGLWDTNFVN 175 Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTF 210 G+ YTTARDMA ++ Q+ K G+++ N N +G++ Sbjct: 176 PSGLPDENQYTTARDMAKIAQYAMQ-NEQFRQVVATKSKPWVGEEWVSKLENHNKMLGSY 234 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 GA G+K GFT A+G+ +V++A +GD LI VIL + K LL GF + T Sbjct: 235 DGAIGVKNGFTQAAGYTLVSAAQRGDMELIGVILKGATDSGVYKDMTQLLDYGFAHFTSM 294 Query: 271 KKINY-IIKDFYQQNLSNEVPNISEE 295 + + + F ++ V I+++ Sbjct: 295 QVMAADEKRTFVTRDTGKPVEFIADK 320 >gi|297529545|ref|YP_003670820.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. C56-T3] gi|297252797|gb|ADI26243.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. C56-T3] Length = 460 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 24/305 (7%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L++ ++G V+ AS+TK+MTA + + +T+S Sbjct: 108 DGVSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIES-----GKMDDTVTVS 162 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + Sbjct: 163 ARAVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAA 222 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EI 195 +G+ T F N HG+ HY+TA DMA+L ++ K E Sbjct: 223 EIGMRDTEFANPHGLDDAENHYSTAYDMAMLMQYAMK-NKEFRRISGTKVYRAPAPPGED 281 Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N N + + + G KTG+T + +V +A +G LIAV L A D Sbjct: 282 GARVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGVDLIAVTLDAPDD---WN 338 Query: 255 VSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 ++ GF + + + ++ I FY+ L V ++ V ++ + Sbjct: 339 DHIAMYEYGFSHYHIAKVSSERVVDKISDPFYRGRL-QAVRDLRYPVTDKEESGLRVKVY 397 Query: 310 MKEAK 314 + + + Sbjct: 398 LLKPR 402 >gi|114566442|ref|YP_753596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337377|gb|ABI68225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 373 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 141/304 (46%), Gaps = 20/304 (6%) Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F +I+ + + I ++ A PYY L+D +G +I + D AS Sbjct: 1 MRGFSKGIRFIILLLLFMGLIASPVNAAPYISSPYYCLMDGGSGQLILSSNGDETRPVAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 K+MTA + + A + T+S A+ P + K +T+ LK+ +++S Sbjct: 61 TVKMMTAILTIEY-----AGMDEEATVSSKAARTPEYSIGLKAEQRITVGELLKVALIRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 +ND AV +AE + E F M+ + +G S T F NA G+ ++T D+A + Sbjct: 116 SNDAAVVLAEHIAGDESLFAHLMSKKAFLIGASNTRFSNASGLPGGEQFSTCSDLAQIG- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY------PNTNWAVGTFLGADGMKTGFTCASGFNIV 229 R PQ + + K Y NTN +G++ GADG+KTG A+G +V Sbjct: 175 RYAQSHPQIKELVATRQSDFKHPSYSQPLRISNTNPLLGSYQGADGIKTGTANAAGKCLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 ASA + + LIAV+L + D R A LL+ GF + ++ IN + L+ + Sbjct: 235 ASATRDGRHLIAVVLKSSD---RAGDCARLLNYGFKDSYYQQIINASTPFKELRVLNAKT 291 Query: 290 PNIS 293 P + Sbjct: 292 PKVK 295 >gi|213857663|ref|ZP_03384634.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 266 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ Sbjct: 42 PQIDAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVG 101 Query: 84 KNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 +A S K G + + ++ + ++S ND VA+A+ ++ FV Sbjct: 102 NDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGL 161 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K G Sbjct: 162 MNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNG 221 Query: 198 KKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + N N + L DG+KTG T +G+N+VASA +G LI+ Sbjct: 222 IRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLIS 266 >gi|293400812|ref|ZP_06644957.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305838|gb|EFE47082.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 378 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 17/320 (5%) Query: 10 MAMLSNIFPFLSIAETNK--------LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 M ML++I +T K L++ +G VI PAS+TK+M Sbjct: 1 MTMLTSIHADEKTKQTTKNDPQIAQNAKSAYLMEYTSGKVIYAKNEKAKLYPASMTKMMG 60 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 ++F L + K +T S A+ S ++ TM++ + +K + + SAND V Sbjct: 61 LLLIFESLHDGKLDWKDEVTTSAYAASMGGSQVFLEENETMSVKDMIKSICIASANDAMV 120 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT-- 179 A+AE + + + FV+ MN +K L L THFMN G+ HYT A+DMAI+ + Sbjct: 121 AMAEKVGGSAEHFVEMMNEKAKKLNLCNTHFMNPTGLHDPQHYTCAKDMAIVGKALIKEG 180 Query: 180 --DFPQYMHYFQ--IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 D + + I+ K NTN + + G DG+K+GFT + I +A + Sbjct: 181 GDDLLKITSTYDAYIREDSEKAFWLVNTNKLLKQYPGVDGLKSGFTSQAMSCITITAKKK 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 D LIAV++G RN +L GF K + + E + Sbjct: 241 DLRLIAVVMGEPSSKVRNGEIKQMLDYGFSQYQQGLLYAAGTK---MKTIPIENGKPQKV 297 Query: 296 VCTTQKEIINYNTQMKEAKD 315 T K+++ + E K+ Sbjct: 298 DVLTDKDLVYVFEKGSEPKE 317 >gi|229166858|ref|ZP_04294605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621] gi|228616486|gb|EEK73564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621] Length = 317 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI +N + PAS++K+MTAY+V + K Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 +G + R + L+S F Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314 >gi|307825263|ref|ZP_07655483.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter tundripaludum SV96] gi|307733719|gb|EFO04576.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter tundripaludum SV96] Length = 395 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 94/264 (35%), Positives = 149/264 (56%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V + + +L+ ++ F + ++D + G+V+ E W PASLTKLMT Y+ Sbjct: 4 VKLTLLILNAVWLFAVSEVSYGRHAAIIIDADNGNVLHEVEATQSWYPASLTKLMTLYMT 63 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F LK + L +T S AS+ P S ++G +T+++A+ +I +SAND +V +AE Sbjct: 64 FDALKAGQIHLHDTLTASTRASQQPNSKLGLRRGEHLTVEDAILAIITRSANDASVVLAE 123 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L TE+ F +M + +LG+ THFMNA G+ + TT RDMA+L+W+ + +FP+Y Sbjct: 124 HLGDTEENFAVNMTEKADSLGMYNTHFMNATGLPNNWQVTTPRDMAVLAWKAQRNFPEYY 183 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 HYF KG + N ++ GA+GMKTGFTC SGFN++ +A Q + LI V++G Sbjct: 184 HYFSAHSFNYKGTELRGINKFTASYPGAEGMKTGFTCGSGFNLIGAAHQNGKHLIGVVMG 243 Query: 246 ALDRNTRNKVSASLLSMGFYNKTD 269 + R ++ + F N T+ Sbjct: 244 GMTSKERYQLMMQKMDASFANLTN 267 >gi|229011286|ref|ZP_04168478.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM 2048] gi|228749942|gb|EEL99775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM 2048] Length = 317 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI +N + PAS++K+MTAY+V + K Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 +G + R + L+S F Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314 >gi|110633932|ref|YP_674140.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium sp. BNC1] gi|110284916|gb|ABG62975.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans sp. BNC1] Length = 382 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 8/262 (3%) Query: 17 FPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 PF + + K LLD TG ++ D P+ PASL KLMTA ++ + LK + Sbjct: 18 LPFARAQSFETKAAQAFLLDGETGAILYSKNADEPFPPASLAKLMTAELLLNALKTGRIS 77 Query: 76 LTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + +S++A + S + ++ L+ +IV+ AND + +AE + + Sbjct: 78 MQREFEVSEHAWRTGGAPSGTATMFAAVNSRVPIEALLQGIIVQQANDGCIILAEGMAGS 137 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 E F + M ++ LGL+ + F+N G+ G T R++A+LS + ++P+Y YF Sbjct: 138 ENAFARLMTERARALGLTRSVFVNPTGLPAEGQQVTVREIALLSRHLWREYPEYYRYFGQ 197 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + E + N +GT GADG+ GFT G+ I AS + + L AV+ G + Sbjct: 198 EDFEWNRIRQRNRVLRLGT--GADGLALGFTEGQGYAIAASMERNGKRLFAVLAGIPEEQ 255 Query: 251 TRNKVSASLLSMGFYNKTDRKK 272 R + + +L GF R+ Sbjct: 256 ERPEETRKMLEWGFSAFERRQL 277 >gi|326405324|ref|YP_004285406.1| putative peptidase S11 [Acidiphilium multivorum AIU301] gi|325052186|dbj|BAJ82524.1| putative peptidase S11 [Acidiphilium multivorum AIU301] Length = 453 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 1/297 (0%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 L I + + ++D TG +++E+ + PASLTKLMT + F L Sbjct: 54 LGGIASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHG 113 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTE 131 + TP+ +S A+ P G T+T+ A+ + SAND A A+ + + Sbjct: 114 RLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSI 173 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 ++ M + LG+ + F N G+ T A DMAIL+ + D+PQY + F + Sbjct: 174 RRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVP 233 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +G+ PN + + + GA GMKTG+T + FN+V +A++ LI V + A Sbjct: 234 SFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIV 293 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 LL GF ++ Q + P + + T Sbjct: 294 AYNRMTQLLDAGFAAESGAPTTVIATATSPQPRAAMPPPPVRQPAAAPVLVASRSRT 350 >gi|148261820|ref|YP_001235947.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] gi|146403501|gb|ABQ32028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum JF-5] Length = 453 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 1/297 (0%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 L I + + ++D TG +++E+ + PASLTKLMT + F L Sbjct: 54 LGGIASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHG 113 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTE 131 + TP+ +S A+ P G T+T+ A+ + SAND A A+ + + Sbjct: 114 RLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSI 173 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 ++ M + LG+ + F N G+ T A DMAIL+ + D+PQY + F + Sbjct: 174 RRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVP 233 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +G+ PN + + + GA GMKTG+T + FN+V +A++ LI V + A Sbjct: 234 SFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIV 293 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 LL GF ++ Q + P + + T Sbjct: 294 AYNRMTQLLDAGFAAESGAPTTVIATATSPQPRAAMPPPPVRQPAAAPVLVASRSRT 350 >gi|225174843|ref|ZP_03728840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225169483|gb|EEG78280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 371 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 119/275 (43%), Gaps = 17/275 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+ L ++ + L ET LLD TG ++ AS TK Sbjct: 1 MRKILAVLLLFCLLLPAGLAVAMETPDVTARAAVLLDQETGRILFSKNAHERLPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + L +T+S+ AS S G TL+ L L+++S ND Sbjct: 61 IMTAILAIES-----GRLDEMVTVSEYASLVEGSGVDLDAGEQKTLEELLYGLMLRSGND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A AIAE L + +KF + M + LG + T F N HG+ HYTTA D+ I++ Sbjct: 116 AATAIAEHLAGSVEKFARQMTRRAGELGAAQTRFENPHGLEAENHYTTAYDLGIIAV-YA 174 Query: 179 TDFPQYMHY--FQIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 P++ K + G+ Y N N + + ADG+KTG+T +G V S+ Sbjct: 175 MSLPEFREVVATSEKRISWTGRPYDRILYNQNKLLDMYEYADGIKTGWTTPAGRCFVGSS 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + L++V+L A + + L+ G+ Sbjct: 235 NKDGWGLVSVVLNAP---QMWEDTIELMEFGYSYY 266 >gi|121602290|ref|YP_988886.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis KC583] gi|120614467|gb|ABM45068.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis KC583] Length = 448 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 161/332 (48%), Gaps = 5/332 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++I +A S + +K ++D NTG + + PASLTK+MT Y Sbjct: 17 IFLVIFVASYSWVEAAPKGVHADKY-AAIVIDANTGKTLFQANATMRRYPASLTKMMTLY 75 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++F ++ ++ TPI IS AS PP+ K G T+ ++ A K LI KSAND+A AI Sbjct: 76 MLFEAMQVRRVAPNTPIPISAYASTRPPTKIGLKTGQTIPVEAAAKALITKSANDVAAAI 135 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 E L +E+KF Q M ++ LG+ T+F NA G+ +Y+TA+D+AILS ++ FPQ Sbjct: 136 GEYLGGSEQKFAQMMTVKARQLGMINTNFANASGLPDTRNYSTAQDLAILSLALREHFPQ 195 Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 F+IK GK + N V T G DG+KTG+T SG N+ S G +S++AV+ Sbjct: 196 QYKLFKIKSFVFHGKIINSHNKLVQTMKGVDGIKTGYTQMSGSNLATSMRLGGRSIVAVV 255 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL----SNEVPNISEEVCTT 299 +G R+ A+LL+ + K ++ NL +P Sbjct: 256 MGGKSSVERDIHMANLLNKYLPKASPVKTDKRLVAAATYHNLPTGAKAPIPVAKANSRNL 315 Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + +I + T + + + I ++ Sbjct: 316 EDDISSLLTALAAEPNHFNTAITAVNQAIIPT 347 >gi|300986937|ref|ZP_07177913.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|300407823|gb|EFJ91361.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1] gi|307626443|gb|ADN70747.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146] gi|315295235|gb|EFU54570.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 153-1] Length = 321 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 10/275 (3%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDNALKLLIV 113 MT YVV + + +T+ ++A S K+G +++ + + LIV Sbjct: 1 MTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIV 60 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+L Sbjct: 61 DSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVL 120 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASA 232 S I P++ H + K L G N N + + DG+KTG T +GFN++ASA Sbjct: 121 SRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASA 180 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + G + LIAV++GA R + + LL G N T + ++ K ++ + NI Sbjct: 181 VDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENI 240 Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + T++E + + K + +D +++T Sbjct: 241 A---LGTEQEFWMVLPKAEIPHIKAKYTLDGKELT 272 >gi|46202335|ref|ZP_00208483.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magnetotacticum MS-1] Length = 404 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 153/309 (49%), Gaps = 7/309 (2%) Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M L P + D +G VIAE+ P +PASLTK+MTAYV F + Sbjct: 1 MLALGLALPTGMVRAEPSASLAV--DLGSGTVIAESRGGMPHHPASLTKMMTAYVAFGAI 58 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K K IT+S+ A+ + G ++L ALK +IV+SAND AVA+AE + Sbjct: 59 KAGKVSQDDIITVSERAASQGGATLDLGPGERISLGAALKAMIVRSANDAAVAVAEHVAG 118 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E F M + LG++++ F NA G+ GH ++ RDMAIL+ I+ DFP + F Sbjct: 119 SESAFAVRMTEEAARLGMTSSSFRNATGMTAAGHVSSPRDMAILAMAIERDFPAFRPMFS 178 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + KG+ P N +G + GA+GMKTGFTC++G+N+VA A +G + +AV++GA Sbjct: 179 SRDTTWKGRVLPTVNGFLGAYAGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAGSS 238 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309 R L+ + + + N+ P+ S+E C + + Sbjct: 239 AERLGAIRRLMDQALQAEPATGRSLAGL-----GNVGGTPPDRSQEACGYARSGKGGGPE 293 Query: 310 MKEAKDKES 318 M A+ + Sbjct: 294 MAIAQRRSV 302 >gi|255505895|ref|ZP_05348727.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] gi|255265270|gb|EET58475.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens DSM 14469] Length = 625 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 25/332 (7%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 SN P + L+D +TG ++ + PAS+TK+MT + K Sbjct: 60 SNNIPNWPQGDPVNAETAILMDADTGAILYAKSIEKQEYPASITKIMTTLIALE-----K 114 Query: 74 AMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L+ +T S+NA EY S+ G +TL+ L +++ SAN+I+ A+AE + Sbjct: 115 GNLSDVVTFSENAVYSIEYGSSHLGLTAGEELTLEQCLYGIMLASANEISNAVAEHIGGD 174 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FV MN ++ LG + THF+N HG+ HY A+DMA++ ++ Sbjct: 175 IETFVGMMNEKAQELGCTNTHFVNVHGLHDENHYVCAKDMALIMQAALK-NEKFREIIGT 233 Query: 191 KGLEIKG-------KKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 + + N + + + G G K G+T + +V +A + ++ Sbjct: 234 VEYNFPETNLVDEVRYFINHHKMISEEGMLYDGCIGGKNGYTDEAWNTLVTAAERDGMTI 293 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 I+V+L + + LL GF N D + N D + + + E+ Sbjct: 294 ISVVLRCPGQYVSYDDTKVLLDYGFANFHDAQIANTNSADIEITGIED-----AAELEKI 348 Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 ++ + A+ K + E L K Sbjct: 349 KQADFSAAPFEMAAETKVTLPAGVEASALKKT 380 >gi|320120306|gb|EFE28569.2| serine-type D-Ala-D-Ala carboxypeptidase [Filifactor alocis ATCC 35896] Length = 443 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 35/295 (11%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLT 57 L+ + + +F A P L++ TG ++ E D P PAS T Sbjct: 11 LLFAVIIFFNTVFLHDIHAVATNTPSLGLNCSTAVLIEEETGKILYEKQKDVPVYPASTT 70 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA + L L IT+ ++ S G T T++ L+ L+VKSAN Sbjct: 71 KIMTALLTLEHLD-----LNQKITVPEDMGPADGSAMYLLPGETFTVEELLQGLLVKSAN 125 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A+ +A+++ + ++F MN ++ +G THF+N +G+ H T+A D+A+++ Sbjct: 126 DAAILLAKNISGSVEEFSNLMNQRAQEIGCQNTHFVNPNGLHDPNHTTSAYDLALIAREA 185 Query: 178 KTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGT--------------FLGADGM 216 P++ ++I + + NTN + + + DG+ Sbjct: 186 MK-NPKFRELVSTDFVQIHATEQTPEIRYFRNTNKFLWSKQTIDYKGISTPIKYDVIDGI 244 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 KTG+T +G +V+S + LIAV++ S LL GF N T +K Sbjct: 245 KTGYTPEAGKCLVSSGEKNGIRLIAVVMKNQGLEV-YANSRKLLDYGFQNFTKKK 298 >gi|51893725|ref|YP_076416.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] gi|51857414|dbj|BAD41572.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum IAM 14863] Length = 374 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 125/289 (43%), Gaps = 31/289 (10%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-- 89 LLD TG V+ E PD P PASLTKLMT ++ F ++ + P+ +S+NA Sbjct: 1 MLLDFATGQVLYEKNPDEPIAPASLTKLMTLHLAFKRIEAGQMSYDDPVVVSRNAWAANF 60 Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S + G +T+ +K L + S ND AVA+AE + T + FV+ MN+ ++ LG Sbjct: 61 PDSSLMFLEPGDKVTVGEVMKGLAIVSGNDAAVALAEHIGGTVENFVKMMNDEAQALGFK 120 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-FQIKGLEIKG---------- 197 F++ HG+ T A + A + P+ + K Sbjct: 121 TFRFVDPHGLSPQNQVT-AGEFARFARLYIQLHPESLEMLHSQKEYSYPQYENLSDARQA 179 Query: 198 ---------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246 N N + T+ G DG+KTGF +GFN+ +A +G L+ V+LG Sbjct: 180 VTSPEAHEPITQMNRNGLLWTYEGVDGLKTGFVDEAGFNLAVTAQRGGMRLVGVLLGIQA 239 Query: 247 ----LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF-YQQNLSNEVP 290 R A+LLS GF N K +K + +NEV Sbjct: 240 DSIPEGSAKREAEGAALLSWGFNNFVTVKPQMPEVKPVRVWKGAANEVT 288 >gi|15615440|ref|NP_243743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus halodurans C-125] gi|10175498|dbj|BAB06596.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus halodurans C-125] Length = 395 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 30/316 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNPASL 56 F V + ++ +N F+S ET ++ L+D +G V+ + D PAS+ Sbjct: 14 FFVSLQFSVQTNASAFVSEGETLNDAHFHLNSESVLLMDQLSGQVLYSEHGDKKMYPASI 73 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK++TA + + L +T+SK A+E + +G +TL ++ L++ S Sbjct: 74 TKIITALIAIE-----EGDLDDIVTVSKTATEVIGTRVYLVEGEEVTLRKLVQGLMINSG 128 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSK-NLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AIAE E+ F + MN + +G+ THF N HG+ HYTTA DMA+++ Sbjct: 129 NDAGTAIAEHFDGNEEAFAERMNRFVQVKIGVENTHFTNPHGLFDKEHYTTAYDMAMIT- 187 Query: 176 RIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 + + ++ K LE G N + + + G G+K G+ SG+ +V + Sbjct: 188 KYAMENEKFRDVASTKELEWIGEGWETTIYNHHRLLWDYPGTTGVKNGYVSQSGYTLVTT 247 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------------KINYIIKD 279 A + DQ LIAV L A + + +LL GF + K K + KD Sbjct: 248 AERDDQQLIAVTLNAPGASFSYNDTMTLLDYGFEHFKTEKIKAGERFVDSDGKEYELAKD 307 Query: 280 FYQQNLSNEVPNISEE 295 FY +E+ IS E Sbjct: 308 FYFSIPEDELFGISLE 323 >gi|147678303|ref|YP_001212518.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] gi|146274400|dbj|BAF60149.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum thermopropionicum SI] Length = 371 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 21/328 (6%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P ++ L+D TG V PASLTK+MTA V L Sbjct: 19 PAVAAPPAITADAAILMDVQTGQVYYAKNHYRRAEPASLTKIMTAVVALE-----NGNLG 73 Query: 78 TPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 +T+ A+ S +KG +TL+ LK ++ SAND VAIAE + + ++F++ Sbjct: 74 DVVTVGGRAAAVSMGSIIDLRKGEKITLEELLKAALISSANDSTVAIAEHVGGSHERFIK 133 Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196 MN + LGL T + N +G HYTTARD+A+L+ R P++ Q K ++ Sbjct: 134 MMNAKAAVLGLFGTRYANTNGYHDPNHYTTARDLAVLT-RCALGHPKFNELVQTKEAAVR 192 Query: 197 GKKYP-------NTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + P N+N + G + G DG+KTG T +G + ASA + + LIAV+L + Sbjct: 193 WVEPPEREEKIINSNRLLFGGYEGIDGVKTGTTPMAGNCLAASATREGRRLIAVVLHS-- 250 Query: 249 RNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 + R + L GF + + K + V ++E+ + + + Sbjct: 251 -DNRYQDCVRLFEYGFNVIRPVLVVRAGEVVAKRPVTGGSAGAVEAVAEKDLEVRLDPDD 309 Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKI 333 K + +K + + Sbjct: 310 LAKLEKRVETGGPVAAPVKKGQKIGESV 337 >gi|150390086|ref|YP_001320135.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149949948|gb|ABR48476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 441 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 39/331 (11%) Query: 1 MRQFLVIIAMAMLSNIF---PFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ + + +++ IF P +S E + P LLD TG V+ + PA Sbjct: 1 MKKSVSLFLTCVITLIFMFNPDISHGEGKPSITAPNGVLLDFQTGEVLYDKNAHEITYPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TK +TA +V L+ L IT+ + S KG T++ L +L+++ Sbjct: 61 STTKALTAILVLENLE-----LDEVITV-EEDMFVGGSGMYLLKGEAFTVNELLHVLMIR 114 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 SAND+A +A + + + F MN +K LG +HF N HG+ H TTA D+A++ Sbjct: 115 SANDVAELLATHISGSVEAFADLMNRRAKELGALNSHFTNPHGLPDEEHVTTAYDLAMIG 174 Query: 175 WRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVG-----------------TFL 211 T + + + + Y NTN + + Sbjct: 175 KHAITFDVLREIAGTVRYDVEPTEFTPETRYYRNTNRFLWGTGSGNQILYRGQYQNIKYD 234 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 +G+KTGFT A+ ++ASAIQGDQ I+V+LGA N S +L+ GF N + Sbjct: 235 IVEGLKTGFTNAAQNCLIASAIQGDQRFISVVLGAQGVNV-YADSRALIDYGFENYQLVQ 293 Query: 272 KI---NYIIKDFYQQNLSNEVPNISEEVCTT 299 + +Y+ + + + +EV S++ T Sbjct: 294 LVEEQHYVTTEPLLKGVEDEVSLYSKDSLTK 324 >gi|118444410|ref|YP_878580.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118134866|gb|ABK61910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 410 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 27/314 (8%) Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I + +++ + T L+D NTG ++ D P+ PAS Sbjct: 1 MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDSPYPPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + K L +TI KNA++ S +G +T+ + L L+++S Sbjct: 61 TTKIMTALLALE-----KCNLDDVVTIGKNATDIDGSKIYIFEGEKLTIRDLLYSLLLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AVA+AE + + ++FV+ MN +K LG T+F+N HG+ H T+ARD+A++ Sbjct: 116 ANDCAVALAEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG------------TFLGADGMKTGFTCA 223 + + + I +G + G +G KTG+T Sbjct: 176 ELSK-HEDFKKIATTQVYVINPTNKEPNKRFIGNKDKLVLKRSKCYYEGCEGGKTGYTIQ 234 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFY 281 S + VA+A + ++SLIAV+L ++T +L + GF N T K N + + Y Sbjct: 235 SKHSFVATATRDNKSLIAVLLH-DAKHTYWDDVINLFNFGFSNYTREKLYSKNQCLYN-Y 292 Query: 282 QQNLSNEVPNISEE 295 + N ++ +P ++ E Sbjct: 293 KINDNSSIPVLATE 306 >gi|152975284|ref|YP_001374801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024036|gb|ABS21806.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 339 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 136/261 (52%), Gaps = 12/261 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + ++D + G VI +N + + PAS++K+MTAY++ + + K + IS Sbjct: 70 PVVEAKAAIIIDASDGEVIYQNNENETFAPASMSKMMTAYLLLENIHKGKVHWEDQVKIS 129 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +++ + + +T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K Sbjct: 130 AKSAQTEGAKIPLQMNDVVTVKDLFHALMIQSANNAAVALAEHMAKTEKNFVQIMNQKAK 189 Query: 144 NLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKG 197 +L LS T F NA G+ + A D+A L++ + ++P+ + ++ + K Sbjct: 190 DLELSNKTKFANASGLQEPDGSETKMPAADVAKLAYHLIKEYPEILEVTHLRRSQLAFKN 249 Query: 198 KKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +TN + T G DG+KTGFT ++G+ +A QGD+ +I V++G + Sbjct: 250 ISVTSTNEMLNTANKNLHIEGMDGLKTGFTDSAGYCFTGTAKQGDKRIITVVMGTKSQTK 309 Query: 252 RNKVSASLLSMGFYNKTDRKK 272 R + L+S GF +RK+ Sbjct: 310 RFTETHKLMSYGFEFVNERKE 330 >gi|304391426|ref|ZP_07373368.1| penicillin-binding protein [Ahrensia sp. R2A130] gi|303295655|gb|EFL90013.1| penicillin-binding protein [Ahrensia sp. R2A130] Length = 289 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 95/264 (35%), Positives = 136/264 (51%), Gaps = 4/264 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASL 56 MR ++ + I + P ++D +G V+ D PASL Sbjct: 21 MRALVIAALALFATGCTTSSVITAPYEPPTARYAAIVIDAKSGKVLHNTRADAIRFPASL 80 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT Y+ F L ++ L + I +S A+ P S K G T+ +D AL+ L VKSA Sbjct: 81 TKMMTMYMAFEALSRRRISLNSEIPVSSYAASKPASKLYLKAGETINVDTALQALAVKSA 140 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND+A A+AE L +E F + M +++LG+ +T F NA G+ TTARDMA LS Sbjct: 141 NDVATAMAEFLGGSEATFARMMTARARSLGMRSTTFRNASGLPDRLQVTTARDMATLSLA 200 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 ++ +PQY HYF KGK N +G GA+G+KTG+T ASGFN+ S + + Sbjct: 201 LQKRYPQYFHYFGKSTFVWKGKTIRGHNRVLGMLKGANGIKTGYTRASGFNLATSVKRPN 260 Query: 237 QSLIAVILGALDRNTRNKVSASLL 260 + L+ VILG RN+ LL Sbjct: 261 KHLVGVILGEDSGKVRNRHMVELL 284 >gi|188584694|ref|YP_001916239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349381|gb|ACB83651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 416 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 29/340 (8%) Query: 2 RQFLVIIAMAMLSNIF-----------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50 ++ ++ + ++ N F P + L++ +G V+ + Sbjct: 9 KKVIITLIFLLMINTFTVSDVTAKQLYPQEFETPEIEAETAVLMEFESGKVLYDQEMHRQ 68 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 +PAS TK+MTA ++ A L + +S+NA S+ +T + L Sbjct: 69 MHPASTTKIMTALLLIE-----NASLREQVVVSENAFGTDGSSMYLNLDEKITTRDLLYG 123 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L+V+SAND AVAIAE + + + F MN+ +K LG T+F N HG+ + H TTA D+ Sbjct: 124 LMVRSANDAAVAIAEYVAGSVENFADMMNSRAKELGAKNTNFKNPHGLTEENHKTTAYDL 183 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCA 223 +++ P++ + + + + N N + + GA G+KTG+T + Sbjct: 184 GVIAREALK-NPKFRSVASTRRITLDWPEEEDEDRLLVNRNELLADYPGALGVKTGYTRS 242 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFY 281 + VA+A + +LIAV+L + RN + + LL GF + N +I Sbjct: 243 ANQTFVAAAERDGMTLIAVVL-STSRNRLFEDAKELLDFGFEAFEQVEIFEQNDVITSTE 301 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321 +N + E+ I EE + I T++++ D E + Sbjct: 302 VENSNQELELIVEESLS--LPIPKMATEIEQRVDLEEQLL 339 >gi|229543957|ref|ZP_04433016.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] gi|229325096|gb|EEN90772.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus coagulans 36D1] Length = 373 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 79/326 (24%), Positives = 149/326 (45%), Gaps = 24/326 (7%) Query: 1 MRQFLVIIAMAML--SNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+++ + A+A+L S + P + A+T + L+D +TG ++ E P + AS+ Sbjct: 1 MKRYFLYAALAVLVFSALPPGAAAADTPSVQAKSAILMDQDTGRILYEKDAYEPRSIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA V + +S A S+ K G + + + L+++S Sbjct: 61 TKIMTALVAIES-----GKMDKEAVVSNRAVRTEGSSLYLKPGDKWKMKDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILS 174 ND A IAE++ + + FV MN +K +G+ THF N +G+ G HY+TA DMA+L Sbjct: 116 NDAANVIAENVGGSIEGFVFMMNEKAKEIGMHDTHFANPNGLEDPGGRHYSTAYDMALL- 174 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAI 233 + ++ K K + N N + + G KTG+T A+ +V +A Sbjct: 175 MKYAMQNKEFRKITGTKFY----KGWRNKNRLLTEKYRYCTGGKTGYTKAARRTLVTTAT 230 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV 289 +G ++LIAV L D ++ GF ++ + ++ Y + Sbjct: 231 KGGENLIAVTLNDSDD---WDDHIAMYEYGFSQYDRKRIVEEGPVAAVRTKYLKQHVYVK 287 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKD 315 +I+ + +++ + ++K+ ++ Sbjct: 288 RDITYPLKAGEEDAVKVEYRIKKPEN 313 >gi|103486742|ref|YP_616303.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis RB2256] gi|98976819|gb|ABF52970.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis RB2256] Length = 273 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 13/246 (5%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--- 88 L D +G ++ D + PAS+ K+MTAYVV LK ++ T T+S Sbjct: 1 MLKDMESGAILFSRGADKRFAPASMAKVMTAYVVLDLLKTRELRRDTTFTVSDAVWRKWN 60 Query: 89 --YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S G +++D+ LK LI SAND A +AE + +E+ FV+ MN + ++G Sbjct: 61 SSTGGSTMFLSPGEKLSVDDLLKGLITVSANDAAAVLAEGIDGSEEAFVRRMNKVAADIG 120 Query: 147 LSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEI------KGK 198 ++++HF +G G +A D+ L+ R+ D P Y YF I L+ + Sbjct: 121 MASSHFGTPNGWPDGGVTKVSAADLITLADRLIRDHPDGYARYFSIPKLQHGVAPDGRPI 180 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 PN N + GADG+KTG T +G+ + SA + + LI V+ G N R + + Sbjct: 181 VQPNRNPILDRVDGADGLKTGHTREAGYCFLGSAERDGRRLIMVVAGLPSANARREEAQR 240 Query: 259 LLSMGF 264 L+ GF Sbjct: 241 LMDWGF 246 >gi|229017289|ref|ZP_04174193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273] gi|229023465|ref|ZP_04179962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272] gi|228737818|gb|EEL88317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272] gi|228743990|gb|EEL94088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273] Length = 317 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI +N + PAS++K+MTAY+V + K Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLENIHNGKVH 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 ++ + N N G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNVNVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 +G + R + L+S F Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314 >gi|220931566|ref|YP_002508474.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] gi|219992876|gb|ACL69479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H 168] Length = 377 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 16/246 (6%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 TG V+ + +H PAS TK++T + + L +T+S+ A+ S+ + Sbjct: 45 TGQVLYNHRMNHKLPPASTTKILTTIIAIEEGE-----LNEMVTVSRRAAYQEGSSIWLQ 99 Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157 +G + L++ L +++ S ND AVA+AE + + KKF + MN +K +G + ++F+N G Sbjct: 100 EGEKLPLEDLLYGVMLASGNDAAVAVAEHISGSVKKFSELMNKRAKEIGATNSNFLNPSG 159 Query: 158 VVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG 212 + Q GHY+TA D+A I+ + +K D + + K + GK++ N N + + Sbjct: 160 LPQSGHYSTAHDLAMIMRYALKNDIFARITSTKYKTISWPGKEWDRGLRNHNKLLWKYPD 219 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 G KTG+T A+G +VASA + ++ ++AV+L + LL G N KK Sbjct: 220 ITGGKTGYTRAAGRCLVASAKRDNRHVVAVVLNCPND---WVEIRKLLDYGLNNF---KK 273 Query: 273 INYIIK 278 I YI K Sbjct: 274 IRYIKK 279 >gi|218289386|ref|ZP_03493620.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] gi|218240492|gb|EED07673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus acidocaldarius LAA1] Length = 456 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 15/293 (5%) Query: 14 SNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 S P++ +T+ P ++D +TG V+ +P PAS+TK+MT + Sbjct: 52 SGPIPYVVGEDTSSWPSIVSQAAVVMDMDTGAVVYAKHPTALHYPASITKIMT-----AL 106 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 L + LT +T S +A PP + G TL + L L++ SAND AV IAE Sbjct: 107 LALRLGRLTDVLTASPDAVRQPPDKLYMRVGEKATLKDLLYGLLIDSANDAAVEIAERYG 166 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 + F MN ++ LG + THF+N G+ H TTA DMA+++ P++ Sbjct: 167 GSVAHFADMMNAEARALGATHTHFVNPSGLPDPRHVTTAYDMAVIARAAMQI-PEFRTIV 225 Query: 189 QIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + E KG + N N + T+ GA G+KTGFT + +V +A +G + +AV++ Sbjct: 226 DTRSYEWKGTAWQATLTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLM 285 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 + + +LL+ F + ++ + + + + P ++ E Sbjct: 286 DCPTDAEIRQDATNLLNYAFSHYETQRILPAGYRAGFVMARDGQDPVVTAEPV 338 >gi|296284125|ref|ZP_06862123.1| D-alanyl-D-alanine carboxypeptidase [Citromicrobium bathyomarinum JL354] Length = 378 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 149/341 (43%), Gaps = 17/341 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M FL +++A+ + + S + P ++D ++G + D + PAS+TK+M Sbjct: 1 MVGFLAALSLALPTGLSAQPSPPTPEQAPIAYMIDLSSGQTLYARDIDRRFVPASITKVM 60 Query: 61 TAYVVFSFLKEKKAMLTTPIT---ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T V F L + K + S + S + + +++ L + SAN Sbjct: 61 TTLVAFDMLADGKLRRDQRMPYRDASFDEWHRKGSTLFLPRRARPSVNELLIGITTVSAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWR 176 D AV +AE + K+ MN T++++G+ ++F +G GH +T+ARD+ +L+ R Sbjct: 121 DAAVVLAEGASGSVDKWTARMNATARSIGMHDSYFGTPNGWPDEGHTFTSARDLGLLAKR 180 Query: 177 IKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 I P + Y+ GL+ G N + G GADG+KTG+T +G+ + +A + Sbjct: 181 IIRGHPDFFDYYYGRTGLKAYGIAQDNHDPITGRVDGADGLKTGYTDQAGYGFLGTAERD 240 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ---NLSNEVPNI 292 + L+ V+ GA RN+ + + GF + Q +++P + Sbjct: 241 GRRLVMVVAGADRGQVRNRAARDFIEWGFDAFDSTLLVRKGKPAASAQVQNGAVDQLPLV 300 Query: 293 SEE---VCTTQKE------IINYNTQMKEAKDKESHFIDFE 324 + + V T + + + Y+ ++ K E Sbjct: 301 AAQDIRVATPRGDGARPELTVRYDGPLRAPIAKGEAVATLE 341 >gi|260888699|ref|ZP_05899962.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|260861568|gb|EEX76068.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 438 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ +TG V+ E D P PAS TK+MT + + L++ +T+S+ A+ Sbjct: 93 AASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIE-----EGDLSSILTVSRTAA 147 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G L + ++++S N +VAIAE L + F HMN +K +G Sbjct: 148 ETEDTEVG--AGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGA 205 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 THF+N +G+ H +TA D+A ++ P++ + K EI K + Sbjct: 206 KDTHFLNPNGLPDPAHVSTAHDIARIA-AYGMKNPKFRSFVGTKEREITWVTPEKKRARM 264 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D R +A LL Sbjct: 265 ANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLL 324 Query: 261 SMGFY 265 MGF Sbjct: 325 DMGFR 329 >gi|15614136|ref|NP_242439.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus halodurans C-125] gi|10174190|dbj|BAB05292.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus halodurans C-125] Length = 382 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 131/306 (42%), Gaps = 27/306 (8%) Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNP 53 MR+F + I LS P AET + L++ +TG V+ E Sbjct: 1 MRRFWLIAISLFVTLSVGIPERVSAETTEPASVSAQAAILMEQSTGRVLYEKDAHTSLRI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA + + + +S NA S+ + G + L + + L++ Sbjct: 61 ASITKIMTALLAIES-----GRMDEWVKVSSNAEGTEGSSLYLRAGEKIKLSDLVYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172 +S ND AVAIAE + + FV MN ++ LG+S T F N HG+ H HY++A DMA+ Sbjct: 116 RSGNDAAVAIAEHVGGSMDGFVYMMNQKAEELGMSNTVFQNPHGLDDHEDHYSSAYDMAL 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGT-FLGADGMKTGFTCASGFN 227 L+ Y K + + + N N + + + G KTG+T + Sbjct: 176 LTRYAMN-NETYQEISGTKTHRVDNGEQIRVWKNKNRLLTQLYKYSTGGKTGYTKRAKRT 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----DRKKINYIIKDFYQ 282 +V++A + D LI V L A +L + F+ + K+ + +FY Sbjct: 235 LVSTASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFHTFGMTELLEEGKVKGLKDEFYA 291 Query: 283 QNLSNE 288 + Sbjct: 292 GQVYAS 297 >gi|219668772|ref|YP_002459207.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219539032|gb|ACL20771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 423 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 122/288 (42%), Gaps = 25/288 (8%) Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPW 51 M++ + +I + + IF P L+ A + L+D +G + D Sbjct: 1 MKRIIALITLLLYFFIFVPALTAAPETQTAAPPEISGEAAYLIDVQSGQTLYSKNGDQLM 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNAL 108 PAS TK+MT + +T S+ +Y + + G ++L++ L Sbjct: 61 APASTTKIMTGLLGIEL-----GNPEDIVTASETMLDYNTVYGTRIYLEPGEQLSLEDML 115 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L++ SAND AVAIAE + FV MN + +LGL T F N G+ + GH TA Sbjct: 116 YALLLNSANDAAVAIAEHISGNTAAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLITAH 175 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTC 222 D+A ++ P + Y + K I K N N + GMKTG+T Sbjct: 176 DLARIAQA-AYANPVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTS 234 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + +VASA + + +I VIL + R +LL GF + Sbjct: 235 VAQNCLVASASRDGRDVIGVILKSPGREI-YTDMQALLDYGFEQFENT 281 >gi|262370309|ref|ZP_06063635.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046] gi|262314651|gb|EEY95692.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046] Length = 436 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 157/324 (48%), Gaps = 26/324 (8%) Query: 1 MRQFLVIIA-MAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ + IA + L + F + + ET + +T+ D+ +G VIAE+ PAS Sbjct: 1 MKAVIYFIATLFALCSSFTQAALLNIVPETVEAQAWTVFDSQSGQVIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ + K + +T + S + S K+G +++D L L+V Sbjct: 61 LTKMMVAYIALKEINAGKLNKSEILTATPVVSTVMWDESQMYLKQGEQISVDQLLAGLVV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FV MN +K LG++ THF N G+ HY+TA D+A+L Sbjct: 121 MSANDAAVTLAERISGDIPNFVARMNQEAKALGMTETHFQNPAGITMPEHYSTAHDLALL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + P Y++Y + + + + TN + DG+KTG+T A+G+N+ +A Sbjct: 181 GQALVNETPDYLYYSKQQSFSYNQRFHRATNVLLKQDPTVDGLKTGYTKAAGYNLALTAN 240 Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286 + ++ L+ ++LG R +V+ +L+++ + + + + + Sbjct: 241 RPTMNPDNPNRRLVVIVLGTESATKRAEVAHNLMNLSYTYTRNEVAL-------KDKQII 293 Query: 287 NEVPNISE-----EVCTTQKEIIN 305 E+P + +V + Q +I+ Sbjct: 294 AELPVVKSTLKMFKVESKQPKIVT 317 >gi|312115142|ref|YP_004012738.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] gi|311220271|gb|ADP71639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii ATCC 17100] Length = 410 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 5/254 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 TL+D +G + E D + PAS++K+MT V+F LK + + T +S Sbjct: 27 TAAAEATLIDVESGATLFEKNADRLFAPASMSKIMTLAVIFKKLKAGEITMDTEFPVSLY 86 Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A ++ T + + ++ + V++AND +A+AE + TE F + M Sbjct: 87 AWRNGGAPSRTTSMFIPLNQTAKVSDLIQGIAVQNANDACIAVAEGISGTEDAFAKLMTE 146 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ LGL + F N+ G+ G+ TAR++A LS + +P YF K + + + Sbjct: 147 EARALGLQKSTFGNSTGLPHPGNQMTARELAALSIHVIKTYPDLYPYFGQKEFKYRTYTF 206 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N T + ADG+K GFT G++I ASA++ + L+ V+ G R + + +L Sbjct: 207 RNHNPLQATAIAADGLKPGFTEGVGYSIAASAVRDGRRLVLVMNGLESERDRREEAQKIL 266 Query: 261 SMGFYNKTDRKKIN 274 + GF N K + Sbjct: 267 NWGFVNFKAYKVFD 280 >gi|213162143|ref|ZP_03347853.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 247 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIV 229 + D P + K + PN N + T L DGMKTG T +G+N+V Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLV 247 >gi|15676773|ref|NP_273918.1| penicillin-binding protein [Neisseria meningitidis MC58] gi|7226115|gb|AAF41288.1| penicillin-binding protein [Neisseria meningitidis MC58] gi|316985771|gb|EFV64715.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria meningitidis H44/76] gi|325139970|gb|EGC62499.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis CU385] gi|325200438|gb|ADY95893.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis H44/76] Length = 389 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PTVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|325137739|gb|EGC60314.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ES14902] Length = 389 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|297617197|ref|YP_003702356.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] gi|297145034|gb|ADI01791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus lipocalidus DSM 12680] Length = 401 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 23/340 (6%) Query: 4 FLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ + A+L + P + A Y L+D TG V+ P AS TK+MTA Sbjct: 33 LVLALTFALLFILSPGKAEAAPYVTSQAYCLVDLTTGQVLGGKNVMQPRPVASTTKVMTA 92 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + + A L +S A+ S + MT+++ LK +++SAND +V Sbjct: 93 ILALEY-----AGLKEVAVVSPKAARTE-SGMGLRPQDKMTIEDLLKAALLESANDASVV 146 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 +AE + +E F MN + +G THF NA G+ H +T D+A+++ Sbjct: 147 LAEHVAGSEDMFAYLMNKKAWAIGAYHTHFENASGLPDKEHLSTCYDLAVITRYALR-NQ 205 Query: 183 QYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + IK G+K NTN +G++ GA G+KTG T A+G ++ +A +G+ Sbjct: 206 VFEKLVATRQAVIKQPGYPGGRKIYNTNKLLGSYEGAFGVKTGTTDAAGKCLIGAAQRGN 265 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296 + L+AV+L + D R LL GF + T K ++ + ++ N+ I V Sbjct: 266 RKLVAVVLRSWD---RYADCQRLLDWGFTSFTREKVVDK--SNMFKVLRVNKGTRIEVTV 320 Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 +++ + +Q K +K +D++ K +K Sbjct: 321 Y-PDRDVYLWLSQDKMGLEKVVD-VDYQP--TAPLKTGQK 356 >gi|226312616|ref|YP_002772510.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] gi|226095564|dbj|BAH44006.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] Length = 406 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 127/285 (44%), Gaps = 21/285 (7%) Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKL-------PYYTLLDTNTGHVIAENYPDHP 50 MR L +++ M + + P E++ L L+D TG V+ E P Sbjct: 1 MRFLLTNLLVVVMVLFNLGMPSAFAEESSSLEPNTLIGQSAILIDATTGQVLFEKNPHEK 60 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 PAS+TK+ T K L +T+SK A + ++G +TL N L Sbjct: 61 LYPASITKIATGIYAIE-----KGNLDDTVTVSKKARREEGTRVYLEEGEKITLRNLLYG 115 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARD 169 L++ S ND AIAE + +T ++F +N K +G++ T+F N HG+ HYTTA D Sbjct: 116 LLMNSGNDAGTAIAEHMSQTTERFAVDLNAYLKEKVGVTETNFANPHGLHDPNHYTTAAD 175 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASG 225 MA +S P + K L G+ + N N + + GA G+K GFT + Sbjct: 176 MAKISRYAMK-NPVFREIVGTKRLPWHGQTWETVLVNHNKLLREYEGATGIKNGFTDQAM 234 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +V SA +G+ LIAV + A K LL GF + Sbjct: 235 HTLVGSAKRGETELIAVTMKASTSANAYKDIKKLLDFGFQGFETK 279 >gi|309379439|emb|CBX22006.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 388 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 5/266 (1%) Query: 11 AMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 A+ SN P + + + ++D + ++ D P PA+L +LMTAY+VF Sbjct: 23 ALSSNRLPVRAASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVF 82 Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 LK + I ++A + S + G ++ D LK +IV SAND A+ +A Sbjct: 83 KNLKSGNIRPEETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGR 142 Query: 127 LC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 L + + FV+ MN +++LG+ T F N G+ + G +TA+D+A+LS + DFP+Y Sbjct: 143 LGNGSIENFVKQMNEEARHLGMKNTVFKNPTGLSREGQVSTAKDLAMLSEALMRDFPEYY 202 Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 F IK + + + N N + G +G+K G T + G+N+ S + ++ + LG Sbjct: 203 PLFSIKSFKFENIEQNNRNTLLYRDSGVNGLKAGHTESGGYNLAVSYSGNGRHILVITLG 262 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRK 271 + R ++ LL+ + K Sbjct: 263 SESAEIRAADTSKLLNRALQSFDTPK 288 >gi|291544371|emb|CBL17480.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13] Length = 378 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 113/276 (40%), Gaps = 19/276 (6%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+++L ++ + L P + A+ Y L++ +TG V+ D AS Sbjct: 1 MKKWLSLMLAVLCCLHLCCPAVHAADPLGISAQAYVLMEADTGKVLLSKNGDEKRPIAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT + L + A S+ ++G +T +++ S Sbjct: 61 TKIMTTLLCLES-----GGLDDWFVVDPEAIRVEGSSMGLQEGDVVTKRMLCYGMLLPSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A A A L + +F + MN + +G++ T F+ G+ GH + RDM +L+ R Sbjct: 116 NDAANATAVRLAGSIPEFAKLMNARAARIGMTHTCFVTPSGLDAEGHGASVRDMGLLA-R 174 Query: 177 IKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 P + E+ + NTN + + G G+KTGFT A+G +V+ Sbjct: 175 TAMQNPDFRAICSQSRAEVCFGNPPYNRWLKNTNKLLTMYEGVVGVKTGFTDAAGRCLVS 234 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + SL+ V L A D L GF + Sbjct: 235 FCERDGVSLLCVTLHAKDD---WNDHMKLYDYGFAH 267 >gi|328909969|gb|AEB61565.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus amyloliquefaciens LL3] Length = 418 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 30/338 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 +++ ++G ++ D AS+TK+MT Y++ +KE K T Sbjct: 16 ASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVY 75 Query: 88 EYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 E SN +K T+ + + + SAN A+A+AE L TE KFV MN +K Sbjct: 76 EISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAK 135 Query: 144 NLGLSATHFMNAHGVVQHGHY--------------TTARDMAILSWRIKTDFPQYMHYFQ 189 LG++ F N+ G+V + +A+DMA+L+ R+ TD+P+ + Sbjct: 136 ELGMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTS 195 Query: 190 IKGLEIKGKK-----YPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 I + + PN N+ + + G DG+KTG T ++G ++A + +I Sbjct: 196 IAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVI 255 Query: 241 AVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 V+L A R + +L F + K + + ++V Sbjct: 256 TVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYPEGSQVKGHKTIDVDKGKDKQVDI 315 Query: 299 TQKEIINYNTQMKEAKD-KESHFIDFEKITLLKNKITK 335 + ++ + + K+ K +D ++IT K TK Sbjct: 316 VTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGTK 353 >gi|154684528|ref|YP_001419689.1| DacA [Bacillus amyloliquefaciens FZB42] gi|154350379|gb|ABS72458.1| DacA [Bacillus amyloliquefaciens FZB42] Length = 443 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 30/338 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 +++ ++G ++ D AS+TK+MT Y++ +KE K T Sbjct: 41 ASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVY 100 Query: 88 EYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 E SN +K T+ + + + SAN A+A+AE L TE KFV MN +K Sbjct: 101 EISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAEMNAKAK 160 Query: 144 NLGLSATHFMNAHGVVQHGHY--------------TTARDMAILSWRIKTDFPQYMHYFQ 189 LG++ F NA G+V + +A+DMA+L+ R+ TD+P+ + Sbjct: 161 ELGMTNYDFKNATGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTS 220 Query: 190 IKGLEIKGKK-----YPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 I + + PN N+ + + G DG+KTG T ++G ++A + +I Sbjct: 221 IAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVI 280 Query: 241 AVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298 V+L A R + +L F + K + + ++V Sbjct: 281 TVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYPEGSQVKGHKTIDVEKGKDKQVDI 340 Query: 299 TQKEIINYNTQMKEAKD-KESHFIDFEKITLLKNKITK 335 + ++ + + K+ K +D ++IT K TK Sbjct: 341 VTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGTK 378 >gi|196248748|ref|ZP_03147448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] gi|196211624|gb|EDY06383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16] Length = 354 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 74/324 (22%), Positives = 131/324 (40%), Gaps = 27/324 (8%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 L++ ++G ++ AS+TK+MTA + L +T+S A Sbjct: 5 SAKSAILIEQHSGRILFAKDAHTKRRIASITKIMTAILAIES-----GKLDDTVTVSARA 59 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 S+ ++G M L + + L+++S ND AVAIAE + + + FV MN + +G Sbjct: 60 VRTEGSSIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIG 119 Query: 147 LSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EIKGK 198 + T F N HG+ HY+TA DMA+L ++ K E + Sbjct: 120 MRDTEFANPHGLDDAENHYSTAYDMALLMQYAMK-NKEFRRISGTKVYRAPAPPGEDGAR 178 Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 + N N + + + G KTG+T + +V +A + L+AV L A D Sbjct: 179 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTLDASDD---WNDHI 235 Query: 258 SLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIINYNT 308 ++ GF N + ++ + I FY+ L P +E+ + ++ Sbjct: 236 AMYEYGFSNYRIAKVSGKRIVKRISDPFYKGRLQAARDLRYPVTEKEMGELRVKVYLLKP 295 Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332 + + ++ K L K Sbjct: 296 RDEWKENPNRAPTAVGKAVLYLRK 319 >gi|51892127|ref|YP_074818.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863] gi|51855816|dbj|BAD39974.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863] Length = 565 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 11/246 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 Y L+D TG V++E P AS TK+MTA + + +T+S Sbjct: 316 PDIAAQAYILVDVATGAVLSEYNARAPRAIASTTKIMTALLAVE-----QGHPDAVVTVS 370 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 NA+ P ++ + G TL L L++ S ND AVAIAE L +E+ F + MN + Sbjct: 371 ANAASQPGTSVYLRAGEQRTLRELLYGLMLVSGNDAAVAIAEHLAGSEEAFARRMNLRAA 430 Query: 144 NLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----K 198 LG T+F+ A G+ + Y+TA D+A +S P + Y + I G + Sbjct: 431 ELGAQNTYFVTASGLDDDVNPYSTAEDLARISLASLR-NPLFRSYMYLPQATIPGLWGNR 489 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + N+N V + GA G+K G+T +G+ +VASA + + ++ V+LG R+ + S Sbjct: 490 QLTNSNLFVLRYPGATGVKNGWTEKAGYTLVASAWRDGREVMLVLLGGESRSALYAEAYS 549 Query: 259 LLSMGF 264 L+ GF Sbjct: 550 LMDHGF 555 >gi|228990579|ref|ZP_04150544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228769105|gb|EEM17703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 373 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 143/333 (42%), Gaps = 16/333 (4%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLT 57 MR+ ++VI + M +++ P + A+ N + L++ ++G V+ AS+T Sbjct: 1 MRRTWIVIALIIMCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASIT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA + + + IS A S + G + L++ + L+++S N Sbjct: 61 KIMTALLAAES-----GKMKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWR 176 D A AIAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R Sbjct: 116 DAAQAIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-R 174 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAI 233 + F K + K YP N + A G KTGFT +G +V +A Sbjct: 175 YAMGNETFRKIFGTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293 + LI V L A + L GF K + Q+ I Sbjct: 235 KDGLDLIVVTLNASND---WDDHMYLFDQGFKQYELTKVLGQGALSGLQEKKYTNHVYIK 291 Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + + +K D+ + +D EK+ Sbjct: 292 NDFAIPLTKDEKKQVMLKVELDRSAKLVDGEKV 324 >gi|304406992|ref|ZP_07388646.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304343979|gb|EFM09819.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 406 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 15/249 (6%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + + ++D +G ++ D P ASLTK+MTA V L + +S Sbjct: 47 STQAKAAAIIDVESGRLLYSKNGDEPMRIASLTKIMTAIVAIE-----NGNLADKVKVSV 101 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A+ S+ + G M L++ L L+++S ND A AIAE + + FV+ MN ++ Sbjct: 102 RAAGKEGSSIYLRAGEVMKLEDMLYGLMLRSGNDAATAIAEHVGGSIDGFVKMMNEKAEW 161 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199 +GL + FMN G+ + GH +TA D+A L+ P + + + + Sbjct: 162 IGLKHSRFMNPSGLDEDGHLSTANDLAKLT-AYALHNPTFAAIVKTRVKKAPNPNEQWDY 220 Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + N N + + GADG+KTG+T A+ +V+SA + Q L AV + + S Sbjct: 221 SWSNKNKMLAMYEGADGVKTGYTKAALRCLVSSATRNGQQLAAVTINDRND---WADHRS 277 Query: 259 LLSMGFYNK 267 +L GF + Sbjct: 278 MLDWGFQHY 286 >gi|325144238|gb|EGC66544.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M01-240013] Length = 389 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|89053769|ref|YP_509220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] gi|88863318|gb|ABD54195.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1] Length = 398 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 6/279 (2%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L+ +S++ ET Y + D +G V+ D PAS++KLMT + Sbjct: 13 LLAAGCFFVSSLMANAQGYETQARAAY-VYDHASGQVLLALNADEALPPASMSKLMTLLM 71 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 F L++ + L T + +S++A + S T++ ++ +++ S ND +V + Sbjct: 72 AFEALRDGRLTLETRVPVSEHAMSFGGSTMFLNTQDRPTIEELIRGVVIVSGNDASVVLG 131 Query: 125 ESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 E+L TE+ F M ++ LG+ + F NA G GH + RD+ IL+ R+ +FP Sbjct: 132 EALSPDGTEEGFATMMTQRAQQLGMMNSTFRNASGWPADGHAMSMRDLGILAQRLIEEFP 191 Query: 183 QYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 +Y YF + + + N N +G +GADG+KTG T +GF +V SA+QGD+ + Sbjct: 192 EYYGYFVETEFDYEDRSPANRFNRNPLLGLGIGADGLKTGHTQEAGFGLVGSAMQGDRRV 251 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 VI G + R + L++ F R + ++ Sbjct: 252 TFVITGLDSADARAAEAERLVTWAFRQFVMRDVVEPGVE 290 >gi|218767989|ref|YP_002342501.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis Z2491] gi|121051997|emb|CAM08306.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis Z2491] gi|319410238|emb|CBY90578.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase; DD-carboxypeptidase; CPase; PBP5) [Neisseria meningitidis WUE 2594] Length = 389 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P ET + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTFQTPETLTAAH-IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + G T++ D LK +I SAND A+ +A L + + Sbjct: 91 IRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++ + LG+ TR Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|308071619|ref|YP_003873224.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681] gi|305860898|gb|ADM72686.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681] Length = 313 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%) Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +R +V+ + +L I P L I + N L+D +TG ++ + D P A+++ Sbjct: 7 LRWAIVVPVLIILIFITLGPRLLIGKPNVDAEAAVLMDMHTGELLMDVNGDTPMPSANMS 66 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMT +V ++ + + IS+ AS N + + G MT+ + ++V SAN Sbjct: 67 KLMTELLVLEDIRAGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSAN 126 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQ----HGH--------Y 164 D AVA+AE E FV+ MN + +GL S + F NA G Q H Sbjct: 127 DAAVALAERSAGNESAFVKRMNGKAAQIGLSSDSRFSNASGAGQSELGPNHPEDIQGETK 186 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAV------GTFLGADGM 216 TA D A L+ + T P+ + +E+ KG NTNW + ++ G DG+ Sbjct: 187 MTASDTAKLASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGL 246 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 K G+T +G+ +A Q + L+AV+LGA + R + + L GF T Sbjct: 247 KAGYTSDAGYCFTGTAEQHGRRLVAVVLGAPSKEERFEQTRRLFDYGFSLSTS 299 >gi|325127981|gb|EGC50880.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis N1568] Length = 389 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|325130023|gb|EGC52816.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis OX99.30304] Length = 389 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 2/261 (0%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + + P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 LTVHAAPTLQTPETLTAAH-IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKS 88 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KT 130 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 89 GNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F I Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSI 208 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + K + N N + +G+K G T + G+N+ S + ++ + LG+ Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268 Query: 251 TRNKVSASLLSMGFYNKTDRK 271 TR ++ LL+ K Sbjct: 269 TRASDNSKLLNWALQAFDTPK 289 >gi|254472024|ref|ZP_05085425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp. JE062] gi|211959226|gb|EEA94425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp. JE062] Length = 352 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 110/322 (34%), Positives = 170/322 (52%), Gaps = 16/322 (4%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R+ + + ++S + S+A + P LL+ +T V+ PW PAS TKLMT Sbjct: 9 RKVHAALGLILIS----YGSLAPASATPS-LLLNLDTQSVLYAEDAGDPWYPASTTKLMT 63 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A V F L ++ T + +S A S K GS MTL +A+ ++V SAND+AV Sbjct: 64 ALVTFEALANREIDHETSVVMSPWAMRQASLKSGLKVGSVMTLQDAIYAVLVGSANDVAV 123 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AES+ +E+ FVQ MN T++ LG++A+HF NA+G+ T+ARD+A+L+ I + Sbjct: 124 ALAESVAGSEEAFVQRMNATARRLGMTASHFANANGLFDATQQTSARDLAVLAREIYLGY 183 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 PQY F + I GK + N + G GMKTGF C+SG NIVA +G Q +A Sbjct: 184 PQYHDVFATSKVTIDGKAITSFNELLTRLPGTVGMKTGFVCSSGRNIVALTDRGGQRYMA 243 Query: 242 VILGALDRNTRNKVSASLLSMGFYNK--TDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299 V+LGA R++ +A LL+ + + +++ I D +Q ++ + +CT+ Sbjct: 244 VVLGATTGRERSERAAKLLTEAMTGELGPNGQQLEDIANDLQRQP-----EDMRKRICTS 298 Query: 300 QKEII----NYNTQMKEAKDKE 317 Q + N M K+K Sbjct: 299 QSKAYEAQQNKRYPMGIGKNKS 320 >gi|121634652|ref|YP_974897.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis FAM18] gi|120866358|emb|CAM10101.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis FAM18] Length = 389 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|146277284|ref|YP_001167443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] gi|145555525|gb|ABP70138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides ATCC 17025] Length = 389 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 122/264 (46%), Gaps = 8/264 (3%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 ++A + + D T V+ + P PAS++KLMT ++F L++ + + Sbjct: 17 ALPALAFDTRARAAWVYDVTTRTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMN 76 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 T +S A + S ++ T+++ + ++V S ND V +AE L TE F + Sbjct: 77 TTFAVSTKAKQMGGSKMFVEERDRPTVEDLIHGIVVNSGNDACVVVAEGLNGTESDFSRA 136 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN +K LG++ + F N+ G + GH + D+ IL+ R+ +FP+Y YF K Sbjct: 137 MNVRAKALGMNDSTFTNSSGWPEPGHRMSVHDLGILAVRLIEEFPEYYPYFAHTEFNYKD 196 Query: 198 K---KYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDR 249 + N N + ADG+KTG T +G+ +V SA + + ++ V+ G Sbjct: 197 RVPSNANNRNPLLRLGPDGDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGLATE 256 Query: 250 NTRNKVSASLLSMGFYNKTDRKKI 273 R + +++ F + + Sbjct: 257 ADRAQEGEQIVNWAFRQFVQKTLV 280 >gi|260888386|ref|ZP_05899649.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|260861922|gb|EEX76422.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 354 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ TG V+ E D PAS+TK+MT + ++ +A L +TI+ A+ Sbjct: 107 ADAAILMNARTGEVLYEKNGDKREYPASMTKMMTCIL---SVESGRADL--AVTITPFAA 161 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 + + + G L + + +++ S N A+AIAE+L +E +F MN ++ +G Sbjct: 162 DVETTRV--RPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGA 219 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 THF+N +G+ HY+TA D+A+++ P++ K I Sbjct: 220 FHTHFVNPNGMPDANHYSTAHDIALIA-AYGLRNPEFRKIVGTKASTIYYLQPAGYKTYC 278 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A+LL Sbjct: 279 ENTNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALL 338 Query: 261 SMGFY 265 GF Sbjct: 339 DYGFS 343 >gi|302871919|ref|YP_003840555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] gi|302574778|gb|ADL42569.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor obsidiansis OB47] Length = 373 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 127/284 (44%), Gaps = 21/284 (7%) Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPA 54 M+ + +I + ++S + A LP ++ TG ++ + D A Sbjct: 1 MKVRVFTLIFLLIVSTELAKICYANEKNLPQVSSKSAIAIEWMTGKILFKKNEDLKLPMA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TK+MTA +V K I I A P S+ +KG + + + L L++ Sbjct: 61 STTKIMTAILVLENCDVNK-----EIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLS 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND AVA+A KKFV MN +K LGLS T F + HG+ Q HYTTA D+A+L+ Sbjct: 116 SGNDAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLT 175 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNI 228 P + + E+ P N N + + GA+G+KTGFT +G + Sbjct: 176 -AYAMKNPIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCL 234 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 V SA + D +I V+L A D + +L + N K Sbjct: 235 VTSACRDDFRVICVVLNAQDM---WNDTRKILDYSYRNFKVLKL 275 >gi|254693780|ref|ZP_05155608.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella abortus bv. 3 str. Tulya] Length = 361 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101 + ++ PASL K+MT Y+ F LK + + ISKNA+ K G T Sbjct: 2 LGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDT 61 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161 ++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T F N G+ + Sbjct: 62 ISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTAN 121 Query: 162 -GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 TTARDMA+L ++ DFP+ F + +G+ Y N + + G DG+KTG+ Sbjct: 122 VSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGY 181 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 T SG+N+V+SA ++ L+ V+LGA R+ A LL+ Sbjct: 182 TNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLT 222 >gi|325135913|gb|EGC58523.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M0579] Length = 389 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTLQTPETLTAAH-IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + G T++ D LK +I SAND A+ +A L + + Sbjct: 91 IRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++A+ LG+ TR Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILAITLGSESAETR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|154502526|ref|ZP_02039586.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149] gi|153796922|gb|EDN79342.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149] Length = 423 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 147/356 (41%), Gaps = 41/356 (11%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY------------YTLLDTNTGHVIAENYPDHPW 51 F ++IA+ L + + E K+ Y L+D ++G ++ + Sbjct: 20 FCLLIAVNGLFPVSCVYAEEEQTKIAYGENTPGQLYARSAVLMDADSGRILFAKNAETER 79 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS TK+MT + +A +++S NA+ P +G L + L L Sbjct: 80 PMASTTKIMTCILALE-----RADPDESVSVSANAAAQPRVRLGTVEGQKFKLKDLLYSL 134 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTA 167 +++S ND AV +AE L + ++F MN ++ LGLS THF+ +G+ H TTA Sbjct: 135 MLESHNDTAVMLAEHLAGSVEQFADEMNQKARELGLSHTHFVTPNGLDGADDGGSHRTTA 194 Query: 168 RDMAILSWRIKTDFP---QYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKT 218 ++A + + P +++ + + + N N + GA KT Sbjct: 195 EELARIMRYCVMESPKRKEFLEITGVSSYQFSDLEQTQTYSCINHNAFLTMMEGAVSGKT 254 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTR---NKVSASLLSMGFYNKTDRKKINY 275 GFT +G+ V + + ++ I +L N R + + L+ G + + Sbjct: 255 GFTGEAGYCYVGALKREKRTFIVALLACGWPNNRSYKWEDTKKLMEYGLEHFEYQSMKGA 314 Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 K ++ +++ +P+ + QKE Y + E + D+E + + +N Sbjct: 315 GQK--FKIRVTDGIPD------SNQKEAYTYAEALSEQSNLSFLLADWESVQVRRN 362 >gi|291561741|emb|CBL40540.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium SS3/4] Length = 514 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 144/341 (42%), Gaps = 37/341 (10%) Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPW 51 M++ L + + + ++ P + + P L+D N+G V+ E P+ Sbjct: 1 MKRILSIFLCLTLILGFCPGQTAYAAAEWPSEISISSDGGILMDINSGAVLFEKNSHEPY 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108 PAS+TK++TA +V L +T S A S + G T+++ + L Sbjct: 61 YPASITKILTALIVIE-----NCGLDETVTFSNTAVNSLEPNSSILGARAGDTLSVRDCL 115 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L+++SAN++A A+AE + F + MN + LG + +HF N G+ HY +A Sbjct: 116 YALLLQSANEVANALAEHCAGSIDAFAEKMNEKTAELGCTDSHFANPSGLNDPNHYVSAY 175 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKYPNTNWAVGT-----FLGAD 214 DMA+++ P ++ ++ G +Y + + + GA Sbjct: 176 DMALIAKAAFN-NPTFVEVDSTTYYDVPAGKLKQYPDGWRYYAHHRMLRRNDSLYYDGAI 234 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G KTG+T +G +V A + LIAV+L T + +L GF N K + Sbjct: 235 GGKTGYTLLAGNTLVTCAERDGMKLIAVVLNG--HQTHYSDTKALFDYGFKNF---KSVP 289 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 +D +++++ + + +N N+ + D Sbjct: 290 VADQDSTYSKVADDLTISGIFSGSATRLTVNKNSAVTLPAD 330 >gi|182414513|ref|YP_001819579.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1] gi|177841727|gb|ACB75979.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1] Length = 341 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 26/288 (9%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNPAS 55 + L A+ + P L++A K P + D TG+V+ E D PAS Sbjct: 5 RRLSCAALVCAVMLTPMLALAAPKKAPKAEPTFKGAIVTDAATGNVLLEQNADVVTPPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TKLMT V+ LK L T + I + + + T++ + ++++S Sbjct: 65 MTKLMTFAVLSDKLKSGALTLGTVVQIEPEDARMGGTQVFLDPRESFTVEELIYAMMIQS 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARD 169 AND + A+A + FV+ MN ++ LG++ T F + HG+ G TT RD Sbjct: 125 ANDASYALARVSAGSVPAFVELMNAKARELGMTQTTFRSPHGLPPKSRRVSEGDLTTPRD 184 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCAS 224 + L + + + Y +K ++ N N +G G DG+KTG+T + Sbjct: 185 FSRLCRHLLLNT-DVLKYSSVKHRVFGPQRATPQQMKNHNNLLGKVAGVDGLKTGYTEGA 243 Query: 225 GFNIVASAIQGDQSLIAVILGALDRN-------TRNKVSASLLSMGFY 265 G+ + A+A++ D+ +I VI+GA N +R++ + LL GF Sbjct: 244 GYCLSATALRNDRRVIVVIMGAFGPNGQKDLGRSRDRKTIELLERGFA 291 >gi|169334343|ref|ZP_02861536.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM 17244] gi|169259060|gb|EDS73026.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM 17244] Length = 369 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 132/279 (47%), Gaps = 14/279 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + +II M +L N+ F + A Y +++ + V+ + + AS TK+M Sbjct: 4 KSIAIIIVMMILINLPNFGGVKAANVSAQAYCIMEAGSNRVLYSSNMNEKLPMASTTKVM 63 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA + K L I I K + ++ K+G +TL++ L +++ S ND A Sbjct: 64 TAVLALE-----KGSLNDVIEIKKEWTGIEGTSIYLKEGEKLTLEDLLHGMMLVSGNDAA 118 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-WRIKT 179 V+IA + + F + MN +K LG+ THF N +G+ HYTTA D +L+ + +K Sbjct: 119 VSIACYIGGSIDNFAKMMNKKAKELGMKNTHFTNPNGLPDDDHYTTAYDFTLLASYAMKN 178 Query: 180 DFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + + + + +G + N N + ++ GA+G+KTGFT + V +A + Sbjct: 179 ENFVKIINDEKWSMPYEGKANQRTLYNKNKLLKSYEGANGVKTGFTKKARKCFVLAAKRN 238 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + ++ V+L + + S L M F N T +K I Sbjct: 239 NMQVVGVLLHTENH---YEESKMFLDMAFNNFTLKKVIE 274 >gi|294011645|ref|YP_003545105.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S] gi|292674975|dbj|BAI96493.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S] Length = 387 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 18/331 (5%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + +LS + +++ P + D ++G V+ D PAS+ K+ Sbjct: 1 MKKSIAALLFVGLLSTPLTAAAPPYSSEAPIAYMKDLSSGAVLYNKGGDTRIPPASMAKM 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVK 114 MTA+V F +++ L T+ + S G ++++N L ++ Sbjct: 61 MTAHVAFRLIQKGDLKLEQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTL 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173 S ND V +AE + TE+ FV MN +K LGL ++F ++G G Y TA D+A L Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAAL 180 Query: 174 SWRIKTDFPQ-YMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGF 226 + + P Y ++ + + N N +G GADG+KTG T +GF Sbjct: 181 AEATIEETPNLYKKFYATRSFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTQEAGF 240 Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQ 283 SA Q + L+ V+ G N R S + GF + KK + Q Sbjct: 241 GFTGSAEQEGRRLVMVVAGLTSFNQRIAESVRFMDWGFRAWKAQPLFKKGQTVETAEVQL 300 Query: 284 NLSNEVPNIS-EEVCTTQKEIINYNTQMKEA 313 + VP ++ +++ T + N +K A Sbjct: 301 GSATSVPLVAPQDMAVTLPRAASSNISVKVA 331 >gi|325290352|ref|YP_004266533.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] gi|324965753|gb|ADY56532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus glycolicus DSM 8271] Length = 292 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 116/249 (46%), Gaps = 15/249 (6%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 L+D TG V+ E PAS TK+MTA + L + +T+S Sbjct: 49 PAITAHTAILMDAQTGEVLYERQSRKVSPPASTTKIMTAILALE-LSKG----DEIVTVS 103 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 + A S+ KG + + ++ +VKS ND VAIAE T FV+ MN Sbjct: 104 EKAGAVGESSIYLNKGDKIKMSELIEGALVKSGNDACVAIAEQTAGTVDSFVELMNKKVL 163 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KG 197 +G THF+N +G+ HY+ A D+AI++ Q+ + K I K Sbjct: 164 TIGGYNTHFVNPNGLPAKNHYSCAYDLAIMARYALQ-NDQFSELVKTKYASISFDEPPKI 222 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 +++ NTN + ++ G+KTG T +G +VASA + ++ LI V+L A D R S Sbjct: 223 EQFKNTNKLLWSYPFTSGVKTGTTNEAGKCLVASANKENRKLICVVLNAPD---RYGDSQ 279 Query: 258 SLLSMGFYN 266 L + GF N Sbjct: 280 KLFNWGFGN 288 >gi|168187889|ref|ZP_02622524.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] gi|169294277|gb|EDS76410.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] Length = 410 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 24/289 (8%) Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I + +++ + T L+D NTG ++ D + PAS Sbjct: 1 MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDTQYPPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + K L +TI KNA+ S +G +T+ + L L+++S Sbjct: 61 TTKIMTALLAIE-----KCKLDDVVTIGKNATNVDGSKIYIFEGEKLTVRDLLYALLLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AVA++E + + ++FV+ MN +K LG T+F+N HG+ H T+ARD+A++ Sbjct: 116 ANDCAVALSEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGT-----------FLGADGMKTGFTCA 223 + + + I PN + + G +G KTG+T Sbjct: 176 ELSK-HEDFKKIATTQIYTINPTNKEPNKRYIWNKDKLVQKKSKCYYEGCEGGKTGYTIQ 234 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 S + VA+A + ++ LIA++L ++T +L + GF N T K Sbjct: 235 SKHSFVATATRDNKGLIAILLH-DAKHTYWDDVINLFNFGFNNYTREKL 282 >gi|169825632|ref|YP_001695790.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus C3-41] gi|168990120|gb|ACA37660.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus sphaericus C3-41] Length = 443 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 154/370 (41%), Gaps = 49/370 (13%) Query: 13 LSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + P + AET+ + L+D ++G ++ E D AS+TK+MT Y++ + Sbjct: 21 IFAGIPAKASAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 80 Query: 70 KEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ++ SN ++ + T+ + + + SAN VAIAE Sbjct: 81 DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 140 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMA 171 ++ TE +F++ MN ++ LGL F+NA G+ + + A+ +A Sbjct: 141 TIAGTETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPAGTGPEDENVMPAKYVA 200 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV----GTFLGADGMKTGFTC 222 L++ + D P+ + QI + + N N+ + + G DG+KTG T Sbjct: 201 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 260 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKI--N 274 +G +A + LIAV++ A+D R +A L + GF + ++ + N Sbjct: 261 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 320 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKESHFIDFEKI 326 Y KD ++ + E KE I++ + + DK+S +K Sbjct: 321 YTFKDQKTVKVTKGKEDKVEIAV---KEPISFMIKSSDKDLYKPKLVLDKKSLEAGVKKD 377 Query: 327 TLLKNKITKK 336 T++ + ++ Sbjct: 378 TVVGKVVIER 387 >gi|126652926|ref|ZP_01725068.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905] gi|126590256|gb|EAZ84378.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905] Length = 439 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 154/370 (41%), Gaps = 49/370 (13%) Query: 13 LSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 + P + AET+ + L+D ++G ++ E D AS+TK+MT Y++ + Sbjct: 17 IFAGIPAKANAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 76 Query: 70 KEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 ++ SN ++ + T+ + + + SAN VAIAE Sbjct: 77 DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 136 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMA 171 ++ TE +F++ MN ++ LGL F+N+ G+ + + A+ +A Sbjct: 137 TIAGTETEFLKLMNKKAEELGLEGYKFVNSTGLNNADLFGMQPAGTGPEDENVMPAKYVA 196 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV----GTFLGADGMKTGFTC 222 L++ + D P+ + QI + + N N+ + + G DG+KTG T Sbjct: 197 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 256 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKI--N 274 +G +A + LIAV++ A+D R +A L + GF + ++ + N Sbjct: 257 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 316 Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKESHFIDFEKI 326 Y KD ++ + E KE I++ + + DK+S +K Sbjct: 317 YTFKDQKTVKVTKGKEDKVEIAV---KEPISFMIKSSDKDLYKPKLVLDKKSLEAGVKKD 373 Query: 327 TLLKNKITKK 336 T++ + ++ Sbjct: 374 TVVGKVVIER 383 >gi|261417877|ref|YP_003251559.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC61] gi|261374334|gb|ACX77077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus sp. Y412MC61] Length = 382 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 27/323 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L++ ++G V+ AS+TK+MTA + + +T+S Sbjct: 30 DGVSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIES-----GKMDDTVTVS 84 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + Sbjct: 85 ARAVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAA 144 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EI 195 +G+ T F N HG+ HY+TA DMA+L ++ K E Sbjct: 145 EIGMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMK-NKEFRRISGTKVYRAPAPPGED 203 Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N N + + + G KTG+T + +V +A +G LIAV L A D Sbjct: 204 GARVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WN 260 Query: 255 VSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIIN 305 ++ GF + + + ++ I FY+ L P +E Q ++ Sbjct: 261 DHIAMYEYGFSHYHIAKVSSERVVDKISDPFYRGRLQAVRDLRYPVTDKEESGLQVKVYL 320 Query: 306 YNTQMKEAKDKESHFIDFEKITL 328 + + K E + K L Sbjct: 321 LKPRKEWKKYPERAPTEVGKAVL 343 >gi|296313509|ref|ZP_06863450.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea ATCC 43768] gi|296839954|gb|EFH23892.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea ATCC 43768] Length = 389 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 2/261 (0%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + + P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 LTVHAAPTLQTPETLTAAH-IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKS 88 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KT 130 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 89 GNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F I Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSI 208 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + K + N N + +G+K G T + G+N+ S + ++ + LG+ Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268 Query: 251 TRNKVSASLLSMGFYNKTDRK 271 TR ++ LL+ K Sbjct: 269 TRASDNSKLLNWALQAFDTPK 289 >gi|134298517|ref|YP_001112013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134051217|gb|ABO49188.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 410 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 LLD +G V+ PAS TK++TA V A +T +TI N S+ Sbjct: 33 AVLLDAKSGAVLYGKEEHKRMYPASTTKVLTALVALEH-----ARMTDRVTIGPNPSKAG 87 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 ++ ++G + + L L++ SAND VAIAE + + KF N ++ LG + T Sbjct: 88 GTSIWLQEGEQLAMQELLYALMLNSANDAGVAIAEHVAGSVGKFAAMSNERARELGANNT 147 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYF--QIKGLEIKGKKY-PNTNW 205 HF+N HG+ HY+TA D+A++ + + + +I + + +KY N N Sbjct: 148 HFVNPHGMPNKDHYSTAYDLALIGQAALKNKDLRKILTTIHHEIPRADPEAQKYLFNHNK 207 Query: 206 AVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 + + + GA G+KTG+T +G I+ASA + LIAV+L + N +A LL Sbjct: 208 LLWSKTYGYKGATGLKTGYTVEAGQCIIASAERNGMELIAVVLRSEGFNL-WTDAAKLLD 266 Query: 262 MGFYNKTDRKKIN 274 GF N T+R+ + Sbjct: 267 YGFANFTNRQLVQ 279 >gi|196039076|ref|ZP_03106383.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] gi|196030221|gb|EDX68821.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus NVH0597-99] Length = 374 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 150/340 (44%), Gaps = 21/340 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKVGKTG 329 >gi|229084569|ref|ZP_04216839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228698719|gb|EEL51434.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 373 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 155/348 (44%), Gaps = 21/348 (6%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLT 57 MR+ ++VI + M ++I P + A+ N + LL+ ++G V+ P AS+T Sbjct: 1 MRRTWIVIALIVMCASIIPIHTYAQMNDVSARNAILLEEHSGRVLYGKSEHEPQKIASIT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA + + + IS A S K G+ + L++ + L+++S N Sbjct: 61 KIMTALLAAES-----GRMREAVPISDKAVRVEGSAIYLKPGNKVPLEDLVYGLLLRSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWR 176 D A AIAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R Sbjct: 116 DAAQAIAENVGGSIEGFVYMMNEKAKQIGMEDTHFSNPHGLDGDGTHYSSAYDMALLT-R 174 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAI 233 + F K + K YP N + A G KTGFT +G +V +A Sbjct: 175 YAMGNETFRKIFGTKTYQSKAWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV 289 + LI V L A + L + GF K + +K+ N Sbjct: 235 KDGLDLIVVTLNASND---WDDHMYLFNQGFKQYELTKVLGQGALSGLKEKKYINHVYTK 291 Query: 290 PNISEEV-CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + S + +KE++ K AK K + I + K K+ ++ Sbjct: 292 NDFSVPLTVGERKEVLLKVELDKNAKLKNGEKVGKTIIYVGKEKVGER 339 >gi|325133984|gb|EGC56639.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M13399] Length = 389 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 85/336 (25%), Positives = 144/336 (42%), Gaps = 17/336 (5%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R ++ LL+ K + I + + KE Sbjct: 270 RASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKM 329 Query: 306 YNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 ++ + K+ + KI IT+K Sbjct: 330 AEQILETIQPIPAPVKKGQILGKIKIRQNGYTITEK 365 >gi|149181680|ref|ZP_01860173.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus sp. SG-1] gi|148850658|gb|EDL64815.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacillus sp. SG-1] Length = 384 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 139/322 (43%), Gaps = 21/322 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 V I + S++ A + ++D +TG V+ E P AS+TK+MTA + Sbjct: 13 VFIFSVIFSSLSGTAEAAPSVSAQRAIVIDQDTGRVLYEKDAHTPSRIASITKIMTAILA 72 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 L + +S NA + S+ K G + L++ + L+++S ND AVAIAE Sbjct: 73 IES-----GKLEETVKVSNNAVKAEGSSIYLKPGEKIKLEDLVYGLMLRSGNDSAVAIAE 127 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQY 184 + + F+ MN ++ +G+ THF N HG+ H HY+TA DMA+L+ + +Y Sbjct: 128 HVGGSLDGFIFLMNKKAEEIGMRNTHFANPHGLDDHEDHYSTAFDMALLT-KYAMQNEKY 186 Query: 185 MHYFQIKGLEIK------GKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQ 237 K +K+ N N + + G KTG+T + +V +A +G+Q Sbjct: 187 KEVAGTKVHTSPDPEHDWDRKWKNKNRLLTELYKYCTGGKTGYTKRAKRTLVTTATKGEQ 246 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297 +LIAV L D + GF N + + I +V Sbjct: 247 NLIAVTLNGPDD---WNDHIQMFEFGFKNFDTVIAVPEGNVKKIEDEFYKNKVYIKRDVL 303 Query: 298 TT----QKEIINYNTQMKEAKD 315 T ++E + ++ + +D Sbjct: 304 LTLTKEEEESVRVEYKLMKPED 325 >gi|49481056|ref|YP_035686.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332612|gb|AAT63258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D KI Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKI 325 >gi|227815684|ref|YP_002815693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CDC 684] gi|254682367|ref|ZP_05146228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721249|ref|ZP_05183039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A1055] gi|254733782|ref|ZP_05191496.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Western North America USA6153] gi|254740527|ref|ZP_05198218.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Kruger B] gi|254753916|ref|ZP_05205951.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Vollum] gi|254759012|ref|ZP_05211039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Australia 94] gi|227004936|gb|ACP14679.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. CDC 684] Length = 374 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 325 >gi|330839897|ref|YP_004414477.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] gi|329747661|gb|AEC01018.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena ATCC 35185] Length = 376 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 15/245 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L++ +TG V+ E D P PAS TK+MT + + L++ +T+S+ A+ Sbjct: 31 AASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIE-----EGDLSSILTVSRTAA 85 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E + G L + ++++S N +VAIAE L + F HMN +K +G Sbjct: 86 ETEDTEVG--AGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGA 143 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGKKY 200 THF+N +G+ H +TA D+A ++ P++ + K EI K + Sbjct: 144 KDTHFLNPNGLPDPAHVSTAHDIARIA-AYGMKNPKFRSFVGTKEREITWVTPEKKRARM 202 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 NTN + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D R +A LL Sbjct: 203 ANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLL 262 Query: 261 SMGFY 265 MGF Sbjct: 263 DMGFR 267 >gi|206978265|ref|ZP_03239143.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217959045|ref|YP_002337593.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|222095199|ref|YP_002529259.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|206743514|gb|EDZ54943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|217067033|gb|ACJ81283.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|221239257|gb|ACM11967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 374 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 148/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 325 >gi|114705796|ref|ZP_01438699.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] gi|114538642|gb|EAU41763.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506] Length = 356 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 5/265 (1%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +R+ + + + + A ++D T V+ HPW PAS TKLM Sbjct: 5 LRRLRARAVIGLPLILTTPFAHATP-----ALVVDAGTRAVLFAEEAGHPWYPASTTKLM 59 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 +AYV F L+ + L TP+TISK A ++ G M L++AL ++V SAN+++ Sbjct: 60 SAYVTFEALRAGEVSLDTPVTISKRAMTEASLHAGLSAGRAMRLEDALFAMVVGSANEVS 119 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +++AE + + + F MN T+ LG++AT F N +G+ +TTARD+A+L D Sbjct: 120 ISLAERVAGSVEAFAARMNATAARLGMTATRFDNPNGLFAASQHTTARDLALLGLAATRD 179 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 FP+Y F + I GKK N + F G G+KTGF CASG N+VA A + + ++ Sbjct: 180 FPEYRELFTTSIVVIDGKKLETENVLLTDFPGTLGLKTGFLCASGRNLVAMAERDGRRIL 239 Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265 V+LGA R + +A L+S F Sbjct: 240 VVLLGATTGRERAERAAKLMSEAFA 264 >gi|118477025|ref|YP_894176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|118416250|gb|ABK84669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] Length = 386 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 13 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 72 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 73 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 128 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 186 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 187 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 247 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 303 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 304 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 337 >gi|196036818|ref|ZP_03104207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196047629|ref|ZP_03114836.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|218902679|ref|YP_002450513.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|225863432|ref|YP_002748810.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB102] gi|301053108|ref|YP_003791319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|195990547|gb|EDX54526.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus W] gi|196021543|gb|EDX60243.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus 03BB108] gi|218536387|gb|ACK88785.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH820] gi|225788779|gb|ACO28996.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102] gi|300375277|gb|ADK04181.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 374 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 325 >gi|229138262|ref|ZP_04266857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|229195769|ref|ZP_04322529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228587666|gb|EEK45724.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228645154|gb|EEL01391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 378 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 148/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 296 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 329 >gi|312135096|ref|YP_004002434.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor owensensis OL] gi|311775147|gb|ADQ04634.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor owensensis OL] Length = 382 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 125/280 (44%), Gaps = 19/280 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 R F++I+ M + + + +E N ++ TG ++ D AS T Sbjct: 11 RVFVLILLMIVNTEVAVTCYASEKNLPQVSSKSAIAIEWMTGKILFRKNEDLKLPMASTT 70 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA +V K I I A S+ +KG + + + L L++ S N Sbjct: 71 KIMTAILVLENCDVNK-----EIEIPPQAVGVQGSSMYLEKGEKLKIIDLLYGLMLSSGN 125 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D AVA+A KKFV MN +K LGLS T F + HG+ Q HYTTA D+A+L+ Sbjct: 126 DAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLT-AY 184 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 P + + E+ P N N + + GA+G+KTGFT +G +V S Sbjct: 185 AMKNPIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLVTS 244 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 A + D +I V+L A D + +L + N K Sbjct: 245 ACRDDFRVICVVLNAQDM---WNDTRKILDYSYRNFKVLK 281 >gi|261392770|emb|CAX50346.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase; DD-carboxypeptidase; CPase; PBP5) [Neisseria meningitidis 8013] gi|325203950|gb|ADY99403.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M01-240355] Length = 389 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|228914143|ref|ZP_04077761.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932855|ref|ZP_04095722.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945169|ref|ZP_04107525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814404|gb|EEM60669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826776|gb|EEM72543.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845476|gb|EEM90509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 378 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 296 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 329 >gi|228926600|ref|ZP_04089669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832976|gb|EEM78544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 378 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 296 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 329 >gi|325206288|gb|ADZ01741.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M04-240196] Length = 389 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|308389049|gb|ADO31369.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha710] Length = 389 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTLQTPETLTAAH-IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + G T++ D LK +I SAND A+ +A L + + Sbjct: 91 IQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++ + LG+ TR Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|261377658|ref|ZP_05982231.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC 14685] gi|269145924|gb|EEZ72342.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC 14685] Length = 389 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 2/261 (0%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + +NI ET + + D + ++ + P PA+LT+LMTAY+VF LK Sbjct: 30 LPANIPSSPQTPETLTAAH-IVTDLQSKQTLSAKNINAPVEPAALTQLMTAYLVFKNLKS 88 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KT 130 + I ++A + S + G+ + D+ LK +I SAND A+ +A+ L + Sbjct: 89 GNIRPEETLKIRESAWKSDGSRMFVRPGNLIRTDDLLKGMIALSANDAALTLADKLGNGS 148 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + F++ MN ++ LG+ T F N G+ Q +TARD+A+LS + DFP+Y F I Sbjct: 149 IENFIKQMNEEARRLGMKDTLFKNPTGLSQERQVSTARDLALLSEALILDFPEYYPLFSI 208 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + K + N N + G +G+K G T + G+N+ S + ++ + LG+ Sbjct: 209 KSFKFKNIEQNNRNILLYRDSGVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAE 268 Query: 251 TRNKVSASLLSMGFYNKTDRK 271 R ++ LL+ + K Sbjct: 269 IRASDNSKLLNWALQSFDTPK 289 >gi|30019617|ref|NP_831248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29895161|gb|AAP08449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 386 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 143/335 (42%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 13 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 72 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 73 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 128 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 186 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 187 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 +G LI V L A +L GF K + I + ++ +N V Sbjct: 247 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHV-Y 302 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK + D K+ Sbjct: 303 TKNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKV 337 >gi|262278233|ref|ZP_06056018.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262258584|gb|EEY77317.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 271 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113 LTK+M AY+ +K K IT + + ++ S K G +++D L LIV Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A Sbjct: 181 GQALIKQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240 Query: 234 Q 234 + Sbjct: 241 R 241 >gi|326387759|ref|ZP_08209365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium nitrogenifigens DSM 19370] gi|326207805|gb|EGD58616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium nitrogenifigens DSM 19370] Length = 398 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 16/290 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDHPWNP 53 L + A+++L+ P + A P ++D N+G V+ P + P Sbjct: 9 LAVPAVSVLAQGAPASTGAPAAPASPESTMPQVTAPIAMMVDVNSGRVLFARDPHRRFVP 68 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKL 110 ASLTK+MT+YV F +K K L + S S+ ++ + L+ Sbjct: 69 ASLTKIMTSYVAFELIKAGKLRLDQKFVMRPETFHKWHGVGSTMFLGNNSSTSVADLLEG 128 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARD 169 ++ SAND V +AE + + F MN +K +G+ +H+ +G + G Y +A D Sbjct: 129 IVTVSANDACVVLAEGIAGSVPGFTAMMNAEAKKIGMRDSHYNTPNGWMDQGETYVSAAD 188 Query: 170 MAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 + LS + T P Y ++ G N N G GADG+KTGFT +G+ Sbjct: 189 LVALSTALITRHPDLYKRFYGHDHATFNGIAQENHNPLYGHTPGADGVKTGFTGEAGYGF 248 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 V S +G + +I V+ G N R S + + F R + K Sbjct: 249 VGSVERGGRRVIMVVAGYGRPNDRADQSRTFVEWAFSAWDSRPILTAGAK 298 >gi|325142125|gb|EGC64550.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis 961-5945] gi|325198078|gb|ADY93534.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis G2136] Length = 389 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 2/261 (0%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 + + P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 LTVHAAPTLQTPETLTAAH-IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKS 88 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KT 130 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 89 GNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F I Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSI 208 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + K + N N + +G+K G T + G+N+ S + ++ + LG+ Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268 Query: 251 TRNKVSASLLSMGFYNKTDRK 271 TR ++ LL+ K Sbjct: 269 TRASDNSKLLNWALQAFDTPK 289 >gi|161869810|ref|YP_001598979.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442] gi|161595363|gb|ABX73023.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442] Length = 389 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTLQTPETLTAAH-IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + G T++ D LK +I SAND A+ +A L + + Sbjct: 91 IRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++ + LG+ TR Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|310658666|ref|YP_003936387.1| serine-type d-ala-d-ala carboxypeptidase [Clostridium sticklandii DSM 519] gi|308825444|emb|CBH21482.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Clostridium sticklandii] Length = 433 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 28/291 (9%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 + I+ + + + I L++ ++G ++ E + P PAS TK+MTA Sbjct: 11 IITILFLNLFISSSFASPIEPDISAEAAILIEIDSGEILYEKNANAPMYPASTTKIMTAL 70 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + L L IT+ ++ S G T+ L L+VKSAND AV + Sbjct: 71 LALEHL-----NLEDKITVPEDMGPADGSAMYLLPGEVFTVRELLDGLLVKSANDAAVLL 125 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 A ++ + F MN +K++G + T F N +G+ H +A DMA+++ Sbjct: 126 ARTISGDIQSFATLMNQRAKDIGCANTSFANPNGLHDPSHTISAHDMALIAREAMK-NAT 184 Query: 184 YMHYFQIKGLEIK-------GKKYPNTNWAVGT--------------FLGADGMKTGFTC 222 + + + + + NTN + + + DG+KTG+T Sbjct: 185 FRELVSQVNVTLNETPQTPEKRYFRNTNRFLWSTSKIIYNNEYIPIKYEVVDGIKTGYTG 244 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 +G +V+S + D +I+V+ A + + S LL GF N + I Sbjct: 245 EAGNCLVSSGKKNDIRVISVVFKASGYDV-YRDSRLLLDYGFDNFEKKTLI 294 >gi|300117503|ref|ZP_07055293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] gi|298725338|gb|EFI65990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1] Length = 374 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDELDLIVVTLSASSD---WDDHMNLFDKGFDRFAQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 325 >gi|218232835|ref|YP_002366250.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus B4264] gi|296502139|ref|YP_003663839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|218160792|gb|ACK60784.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264] gi|296323191|gb|ADH06119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 374 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 143/335 (42%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 +G LI V L A +L GF K + I + ++ +N V Sbjct: 235 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHV-Y 290 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK + D K+ Sbjct: 291 TKNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKV 325 >gi|315644414|ref|ZP_07897547.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] gi|315280164|gb|EFU43457.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex V453] Length = 472 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 26/315 (8%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L++ +TG V+ D PAS+TK+MT Y+V +K+ + +++ +NA Sbjct: 80 DVSSAVLIEPSTGQVLLSVNADEALPPASMTKMMTEYIVAEKVKQGELAWDEMVSVKENA 139 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + S +G T++ + V SAND VA+AE + +E++FV MN+T+K +G Sbjct: 140 EKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEEEFVTLMNDTAKKMG 199 Query: 147 LSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 L F+N+ G+ +A D A+L+ I D P + + I+ + Sbjct: 200 LKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKFIVEDHPDFARFTAIQSHK 259 Query: 195 IKGKKYP---NTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + N NW + + G DG+KTG T A+ + +A + LI Sbjct: 260 FRPRDTHPIINYNWMLEANKDITNFKKYAYEGLDGLKTGHTNAAKYCFAGTAERDGMRLI 319 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 +V++G R S +L GF N ++ ++ + + T Sbjct: 320 SVVMGTKSEGARFVESKKVLDYGFDNFEVKEVQAAGATVEGFDSIEVKKGKGKQTAVVTD 379 Query: 301 KEIINYNTQMKEAKD 315 K + + K+ Sbjct: 380 KAVTFVVPKGSTGKN 394 >gi|229149767|ref|ZP_04277997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] gi|228633798|gb|EEK90397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550] Length = 378 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 143/335 (42%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 +G LI V L A +L GF K + I + ++ +N V Sbjct: 239 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHV-Y 294 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK + D K+ Sbjct: 295 TKNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKV 329 >gi|310644848|ref|YP_003949607.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] gi|309249799|gb|ADO59366.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] Length = 313 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%) Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +R +V+ + +L I P L I + N L+D +TG ++ + D P A+++ Sbjct: 7 LRWAIVVPVLIILIFITLGPRLLIGKPNVDADAAVLMDMHTGELLMDVNGDKPMPSANMS 66 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 KLMT +V ++ + + IS+ AS N + + G MT+ + ++V SAN Sbjct: 67 KLMTELLVLEDIRTGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSAN 126 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLS-ATHFMNAHGVVQ----HGH--------Y 164 D AVA+AE E FV+ MN + +GLS + F NA G Q H Sbjct: 127 DAAVALAERSSGNEYAFVKRMNEKAAQIGLSPDSRFSNASGAGQSELGPNHPKDIRGETK 186 Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAV------GTFLGADGM 216 TA D A L+ + T P+ + +E+ KG NTNW + ++ G DG+ Sbjct: 187 MTASDTAKLASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGL 246 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 K G+T +G+ +A Q + L+AV+LGA + R + + L GF T Sbjct: 247 KAGYTSDAGYCFTGTAEQHGKRLVAVVLGAPSKEERFEQTRKLFDYGFSLSTS 299 >gi|302392427|ref|YP_003828247.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] gi|302204504|gb|ADL13182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum DSM 5501] Length = 383 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 84/325 (25%), Positives = 141/325 (43%), Gaps = 20/325 (6%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 +S ++D TG V+ PAS TK+MT + L T Sbjct: 25 IVSAKPDITARSAIVVDVKTGEVLYAKNHHERRPPASTTKIMTGILAIE-----NGNLDT 79 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T+S A+ S+ G T+ L+ L L++ S ND AVAIAE + + + F M Sbjct: 80 EVTVSDRAAYTGGSSIWLTSGETLKLEELLYGLLLNSGNDAAVAIAEHIGGSVEGFAWMM 139 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--KGLEIK 196 N ++ +G T F N +G+ Q+GH TTA D+A+++ + + K + + Sbjct: 140 NRKAREIGALNTTFQNPNGLPQNGHLTTAYDLALITRYALQ-NDTFAKIVRTVRKTISWE 198 Query: 197 GKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 G +Y NTN + F DG+KTG+T A+G +V++A ++ +++V+L + Sbjct: 199 GHEYGRSLLNTNRLLRKFDKVDGVKTGYTDAAGRCLVSAASADNRQVVSVVLKSG---QM 255 Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 S LL+ G N K+I I KD + E KE Q ++ Sbjct: 256 WHDSIKLLNYGLDNF---KQIELISKDETAHTIRINEAKKEEVDLIAAKEFGIVIPQDED 312 Query: 313 AKDKESHFI--DFEKITLLKNKITK 335 + K+ + D + ++ K Sbjct: 313 VEIKKEVRVQNDLKLPIEKGEQVGK 337 >gi|42781103|ref|NP_978350.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|217959457|ref|YP_002338009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|229138682|ref|ZP_04267264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST26] gi|42737024|gb|AAS40958.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|217066480|gb|ACJ80730.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH187] gi|228644801|gb|EEL01051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST26] gi|324326015|gb|ADY21275.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 317 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 12/265 (4%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 ++ + P I ++D + G +I ++ + + PAS++K+MTAY++ + Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168 Query: 132 KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHY 187 K FVQ MN +K L +S F NA G+ + TA D+A L++ + D+P+ + Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228 Query: 188 FQIKGLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++ + +TN + G DG+KTGFT ++G+ +A QGD + Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I V++G + R + L+S F Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313 >gi|304406838|ref|ZP_07388493.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304344371|gb|EFM10210.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 415 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 135/323 (41%), Gaps = 36/323 (11%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL-----------------------PYYTLLDTNTGHV 41 ++I A+L P S A + L+D TG + Sbjct: 1 MLIAVFAVLLVFPPAASAAGESTAIAKDLASAGEQTALARKPPELLAESAILMDRRTGTI 60 Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101 + E PAS+TK++TA V A + +T+SK A + ++G Sbjct: 61 LYEKNASQRMYPASITKIVTAIVALES-----ANVEDVVTVSKEARGEEGTRVYLEEGEQ 115 Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQ 160 M L L ++V S ND A AIAE + +++KF +HMN + + F N G+ Sbjct: 116 MKLWQLLLGMMVNSGNDAATAIAEHVDGSKEKFAEHMNAWIREKANAYDSQFRNPSGLPD 175 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGM 216 HYTTA DMA ++ ++ K + G+ + N N +GT+ GA G+ Sbjct: 176 PEHYTTAEDMAKITQ-YAMSNEKFRELVGTKKVIWNGQTWQTVLVNHNKLLGTYDGATGV 234 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276 K G+T +G +VASA + LI VIL A N S+L GF K+ + Sbjct: 235 KNGYTTLAGSTLVASAERNGMELIGVILKAPSSNQMYADMRSILDYGFAAFE--PKLLFD 292 Query: 277 IKDFYQQNLSNEVPNISEEVCTT 299 + Y+ + + V ++E T Sbjct: 293 ENETYEMDGAPAVAYTADEAIWT 315 >gi|254670388|emb|CBA05903.1| putative penicillin-binding protein precursor [Neisseria meningitidis alpha153] Length = 389 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTLQTPETLTAAH-IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + G T+ D LK +I SAND A+ +A L + + Sbjct: 91 IRSEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++ + LG+ R Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|163760085|ref|ZP_02167168.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Hoeflea phototrophica DFL-43] gi|162282484|gb|EDQ32772.1| putative penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase [Hoeflea phototrophica DFL-43] Length = 289 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 141/264 (53%), Gaps = 6/264 (2%) Query: 4 FLVIIAMAMLSNIF-----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 FLV ++ ++ S+A T ++D +G ++ + PASLTK Sbjct: 19 FLVAAFVSACASSGGSIDEAVYSVAPTTAKYAAIVVDEKSGKMLYGANVNELRYPASLTK 78 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT Y++F + + + TPI IS+NA+ PPS K G ++ +D A+++L+VKSAND Sbjct: 79 MMTVYMLFEAMDQGRISRDTPIPISRNAARRPPSKLGLKAGQSIPVDTAIRVLVVKSAND 138 Query: 119 IAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 +A A+ E +E +F M ++ LG+S T F NA G+ +TA DMA LS + Sbjct: 139 VATAVGEFLGGGSEARFADMMTAKARTLGMSRTTFKNASGLPDPDQVSTATDMARLSIAL 198 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 + +FP + YF + + G+ N A+ GADG+KTG+T ASGFN+ S + Sbjct: 199 RRNFPHHYSYFGQTEVTVAGRTIKGHNKAMKMIPGADGLKTGYTRASGFNLATSVRHQGK 258 Query: 238 SLIAVILGALDRNTRNKVSASLLS 261 S++ V++G + R+ L+S Sbjct: 259 SVVGVVMGEDKASIRDARMTQLMS 282 >gi|167630369|ref|YP_001680868.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] gi|167593109|gb|ABZ84857.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum Ice1] Length = 259 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 14/266 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ +L S + L+D TG ++ E P PAS TK++TA + Sbjct: 1 MCLSPFLLLGGPALCSASPQVTADAAVLMDAETGRILFERQAHQPRPPASTTKIVTALLG 60 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 F F L + IS+ A ++ G + L + L +V+S ND VAIAE Sbjct: 61 FEF-----GDLEDEVIISQKAGSTGEASINLFPGERVALGDLLTGALVRSGNDACVAIAE 115 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E+ F M S+ +G ++ F N +G+ H+++A D+A+++ P++ Sbjct: 116 HIAGSEEFFTLWMTAKSRIIGGRSSQFFNTNGLPHKHHWSSAYDLAVVTREAMRR-PEFA 174 Query: 186 HYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + + +K ++ NTN + ++ ADG+KTG T A+G +VASA + ++ LI Sbjct: 175 ATVRSRRATLKNRQGWPKEIKNTNALLWSYPFADGVKTGTTRAAGACLVASATKNNRQLI 234 Query: 241 AVILGALDRNTRNKVSASLLSMGFYN 266 AV+L + D R S L GF Sbjct: 235 AVVLHSDD---RFGDSLRLFEYGFNQ 257 >gi|325132290|gb|EGC54983.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis M6190] Length = 389 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + T++ D LK +I SAND A+ +A L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPSDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|222095601|ref|YP_002529658.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1] gi|221239659|gb|ACM12369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1] Length = 317 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 12/265 (4%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 ++ + P I ++D + G +I ++ + + PAS++K+MTAY++ + Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168 Query: 132 KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHY 187 K FVQ MN +K L +S F NA G+ + TA D+A L++ + D+P+ + Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228 Query: 188 FQIKGLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++ + +TN + G DG+KTGFT ++G+ +A QGD + Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I V++G + R + L+S F Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313 >gi|229102172|ref|ZP_04232882.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] gi|228681242|gb|EEL35409.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28] Length = 378 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 30/353 (8%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKKYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN---- 287 + LI V L A +L GF K + + + ++ +N Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHVYT 295 Query: 288 ----EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP EE +K ++ K AK E + I + K+ ++ Sbjct: 296 KNSFSVPLTEEE----KKNVVLKVELDKSAKLTEGVKVGKTDIYVGNEKVGER 344 >gi|258590884|emb|CBE67179.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [NC10 bacterium 'Dutch sediment'] Length = 355 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 20/258 (7%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 F++ E L+D +TG ++ + +PAS TK+MTA ++ + L Sbjct: 82 FVNDPEALSASSALLMDADTGAILFARHHMERRSPASTTKIMTALLILE-----EGQLDD 136 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 + IS+ A+ + ++G + L + L +++KSAND A+A AE + +E++FV M Sbjct: 137 KVLISERAAAVSGTGLGLRRGQRVVLRDLLWAILLKSANDAALAAAEHVGGSEEQFVARM 196 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---- 194 N + +LG+ T F N HG+ HY+TA D+AIL+ + P + Q + + Sbjct: 197 NAKAASLGMQGTQFSNPHGLDHQDHYSTAFDLAILARQALR-NPTFARMVQTREAQVAIL 255 Query: 195 -------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 +K + N +G F GADG+KTG+T +G +VASA +GD LIAV+L Sbjct: 256 TGRNGSVVKRRVIRTHNQLLGQFSGADGVKTGYTSLAGRCLVASATRGDHQLIAVLLN-- 313 Query: 248 DRNTRNKVSASLLSMGFY 265 + R +A+LL GF Sbjct: 314 -DSRRWVEAAALLEYGFA 330 >gi|75764308|ref|ZP_00743843.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488202|gb|EAO51883.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 349 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 17/283 (6%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 51 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 110 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 111 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 165 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 166 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 224 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 225 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 284 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 + LI V L A +L GF K + Sbjct: 285 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQ 324 >gi|228994104|ref|ZP_04154004.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228765556|gb|EEM14210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 425 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 158/378 (41%), Gaps = 43/378 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I+ + +LS ++ + + L D +TG ++ E PD AS Sbjct: 3 MRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLL 111 ++KL+ Y V +KE K T + IS A E SN F+KG T+ + Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGLQYTVKELYHSI 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 ++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV----G 208 + +ARDM ILS I T +P+ + + + K + N NW + Sbjct: 183 DPNGENSLSARDMGILSRTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302 Query: 269 DRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM--KEAKDKE 317 +K + +D E+ IS++ ++ + ++ K Sbjct: 303 KQKLKIDKNNTISVVKGKEDTVTVTPEKEITVISKKGSKPSYKVSTEADKSLAEDGKLVA 362 Query: 318 SHFIDFEKITLLKNKITK 335 D + +L+ + Sbjct: 363 PIKKDAKVGSLVLESTDQ 380 >gi|229074761|ref|ZP_04207780.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] gi|228708359|gb|EEL60513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18] Length = 378 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + + + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHV-Y 294 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK + D K+ Sbjct: 295 TKNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKV 329 >gi|85374069|ref|YP_458131.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis HTCC2594] gi|84787152|gb|ABC63334.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis HTCC2594] Length = 347 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 8/272 (2%) Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--- 88 L+D +G + PD + PAS+TK+MTAY F +K+ K T T S+ A++ Sbjct: 1 MLVDMASGQTLYARNPDRRFVPASITKVMTAYTAFELMKQGKLAPGTRFTFSEAAADEWY 60 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S +GS + + L + SAND ++ +AE + ++ MN + LG+ Sbjct: 61 RTGSTMFLDRGSETAVTDLLMGITTVSANDGSIVLAEGAAGSVDNWLDLMNAHADALGMH 120 Query: 149 ATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWA 206 +HF +G G +TTARD+ L+ + T+ P Y YF +GL G N + Sbjct: 121 QSHFGTPNGWPDEGRTFTTARDLVTLAKALITEHPGLYARYFGHRGLRTNGIAQDNYDPI 180 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 G GADG+KTGFT +G+ + SA + + L+ V+ + +R++ + +L+ GF Sbjct: 181 TGRIEGADGIKTGFTNQAGWGFLGSAERDGRRLVMVVAASPGMRSRDETARALMEWGFGA 240 Query: 267 KTDR---KKINYIIKDFYQQNLSNEVPNISEE 295 R + + + Q VP +++ Sbjct: 241 FDSRMLFRSGDTVGHARVQDGAEAAVPLMADR 272 >gi|327438154|dbj|BAK14519.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris StLB046] Length = 445 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 50/377 (13%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + I+ ++ML+ + P + A T+ + L+D +TG ++ E + AS+TK+M Sbjct: 14 LIPILILSMLA-MTPAKTHAATDLGLTVDAAILIDADTGKILYEQNAETALGIASMTKMM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSA 116 T Y++ +KE +++ + SN + T T+ + + + SA Sbjct: 73 TEYLLLDAIKEGSISWDQEYNVTEYTYKVSQNRLLSNVPLRADGTYTIKELYEAMAIYSA 132 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162 N +AIAE++ TEK+F++ M+ ++ LGL F+NA G+ Sbjct: 133 NAATIAIAETIAGTEKEFLKLMDKKAEELGLENYKFVNATGLNNADLQGMHPEGTGEKDE 192 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGA 213 + AR +A L++ + D P+ + +I + N N+ + + G Sbjct: 193 NVMPARSVAKLAYNLLKDHPEMLETAKIPKKVFREGTSDAISMSNWNFMLPGLVYEYEGV 252 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNK 267 DG+KTG T +G +A +GD LIAV++ A+D N R +A L GF Sbjct: 253 DGLKTGTTDFAGHTFTGTAKRGDTRLIAVVMKAVDSNGVGSYKARFDATAKLFDYGFGQF 312 Query: 268 TDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKE 317 + + + NY+ F +Q + + V KE ++ + E DK+ Sbjct: 313 SKVELLPGNYV---FEEQKSIPVIKGKEDSVKIAVKEPVSVMVKTSEKDSYVPTLTLDKK 369 Query: 318 SHFIDFEKITLLKNKIT 334 EK ++ + Sbjct: 370 EIEAGVEKDQVVGQAVL 386 >gi|229000174|ref|ZP_04159743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228759506|gb|EEM08483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 426 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 157/364 (43%), Gaps = 33/364 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I+ + +LS ++I+ + L D +TG ++ E PD AS Sbjct: 3 MRKILSILLVFLLSFSSLGVTISHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLL 111 ++KL+ Y V +KE K T + IS A E SN F+KG T+ + Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYHSI 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 I+ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 123 IIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV----G 208 + +ARDM ILS I T +P+ + + + K + N NW + Sbjct: 183 DPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302 Query: 269 DRK-KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 +K KI+ + + V E+ T + + + +S D + + Sbjct: 303 KQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSKPPYTISTEADKSLSQDGKVVA 362 Query: 328 LLKN 331 +K Sbjct: 363 PIKK 366 >gi|56420821|ref|YP_148139.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] gi|56380663|dbj|BAD76571.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus HTA426] Length = 382 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 75/323 (23%), Positives = 132/323 (40%), Gaps = 27/323 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L++ ++G V+ AS+TK+MTA + + +T+S Sbjct: 30 DGVSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIES-----GKMDDTVTVS 84 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + Sbjct: 85 ARAVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAA 144 Query: 144 NLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EI 195 +G+ T F N HG+ HY+TA DMA+L ++ K E Sbjct: 145 EIGMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMK-NKEFRRISGTKVYRAPAPPGED 203 Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + + N N + + + G KTG+T + +V +A +G LIAV L A D Sbjct: 204 GARVWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WN 260 Query: 255 VSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIIN 305 ++ GF + + + ++ I FY+ L P +E + ++ Sbjct: 261 DHIAMYEYGFSHYHIAKVSSERVVDKISDPFYRGRLQAVRDLRYPVTDKEESGLRVKVYL 320 Query: 306 YNTQMKEAKDKESHFIDFEKITL 328 + + K E + K L Sbjct: 321 LKLRKEWEKYPERAPTEVGKAVL 343 >gi|229096060|ref|ZP_04227034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] gi|229115016|ref|ZP_04244427.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228668432|gb|EEL23863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3] gi|228687352|gb|EEL41256.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29] Length = 378 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + + + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHV-Y 294 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK + D K+ Sbjct: 295 TKNSFSVPLTEEEKKNVVLKVELDKSAKLTDGVKV 329 >gi|226311997|ref|YP_002771891.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] gi|226094945|dbj|BAH43387.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC 100599] Length = 389 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 119/294 (40%), Gaps = 20/294 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 FL I + + + + L+D +G ++ ASLTK MTA Sbjct: 14 FLFIQMVLTPAAVVKAAAAPPGLSAEGAALIDVESGRILYSKNGTKKMRIASLTKTMTAI 73 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 V L +T+ A S+ K G +TL+ L L+++S ND AV I Sbjct: 74 VAIEM-----GKLDAQVTVPPQAVGVEGSSIYLKNGEKLTLEELLYGLMLRSGNDAAVTI 128 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFP 182 A + + F MN + +G+ T+F N HG+ HY+T DMA LS P Sbjct: 129 AMHIGGSVPGFTYLMNEKAAMIGMEYTNFTNPHGLDDSNQHYSTPEDMAKLS-AYALHNP 187 Query: 183 QYMHYFQIK------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + K E ++ N N + + GADG+KTG+T + + +SA + Sbjct: 188 VFRQIVSTKVKDISWEGEQWDRRLLNKNKMLHLYNGADGVKTGYTKLAKRCLASSATRNG 247 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290 + L + L A D SA L+ GF N + ++K+ + V Sbjct: 248 RQLATITLNASDD---WNDSAKLMDWGFANY----PLQELVKNGQEVKPDTPVT 294 >gi|49481177|ref|YP_036116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332733|gb|AAT63379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 317 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G D+ R + L++ F Sbjct: 293 MGTEDKTKRFTETNKLMTYAF 313 >gi|229150211|ref|ZP_04278433.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550] gi|228633330|gb|EEK89937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550] Length = 317 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNAAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|331270026|ref|YP_004396518.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] gi|329126576|gb|AEB76521.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum BKT015925] Length = 412 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 148/328 (45%), Gaps = 22/328 (6%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 T L+D NTG V+ D + PAS TK+MTA + K L +T+ Sbjct: 28 PPTVSADGVVLMDKNTGQVLYSKNLDTQYPPASTTKIMTALLTLENCK-----LDDVVTV 82 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 KNA S +G +T+ + L L+++SAND AVA++E + + K+FV MN + Sbjct: 83 GKNAVNVDGSKVYLFEGEKLTVKDLLYALLLQSANDSAVALSEHVAGSTKEFVNLMNKKA 142 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY----MHYFQIKGLEIK 196 K LG T+F+N HG+ H TTARD+ ++ + F Q M+Y E K Sbjct: 143 KELGCKNTNFVNPHGLYDDKHRTTARDLGLILRELSKHEEFKQIATTSMYYINPTNKETK 202 Query: 197 GKKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + N + + + G +G KTG+T S + VA+A + ++SLIAV+L ++T Sbjct: 203 KRPIWNKDKLIQKNSKCYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAVLLH-DAKHT 261 Query: 252 RNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQNLSNEVPNISEE--VCTTQKEIINYN 307 L GF N T N + ++ N ++P ++ E +K+ + Sbjct: 262 YWDDVIKLFDYGFNNYTRETLYNKDQTLCNYNVTN-DLKIPILASEDFYYLKRKDAKDAP 320 Query: 308 TQMKEAKDKESHFIDFEKITLLKNKITK 335 + S + I L N I + Sbjct: 321 KLKINDESLGSKSFNKGDIILTGNIIYQ 348 >gi|326939188|gb|AEA15084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 140/335 (41%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + I + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-Y 290 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK D K+ Sbjct: 291 TKNSFSVPLTEEERKNVLLKVELDKSITLEDGVKV 325 >gi|254804742|ref|YP_003082963.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] gi|254668284|emb|CBA05194.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis alpha14] Length = 389 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T+ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEI 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNWALQAFDTPK 289 >gi|229172673|ref|ZP_04300231.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3] gi|228610805|gb|EEK68069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3] Length = 317 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEIDAKVAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIQVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKELKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVVSTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313 >gi|206977452|ref|ZP_03238347.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] gi|206744302|gb|EDZ55714.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus H3081.97] Length = 317 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 12/265 (4%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 ++ + P I ++D + G +I ++ + + PAS++K+MTAY++ + Sbjct: 49 LVEKVVPPKYIPREIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168 Query: 132 KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHY 187 K FVQ MN +K L +S F NA G+ + TA D+A L++ + D+P+ + Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228 Query: 188 FQIKGLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++ + +TN + G DG+KTGFT ++G+ +A QGD + Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I V++G + R + L+S F Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313 >gi|218896498|ref|YP_002444909.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|218543820|gb|ACK96214.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] Length = 374 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 140/335 (41%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + I + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-Y 290 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK D K+ Sbjct: 291 TKNSFSVPLTEEERKNVLLKVELDKSITLEDGVKV 325 >gi|228938680|ref|ZP_04101285.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971562|ref|ZP_04132186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978173|ref|ZP_04138551.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228781645|gb|EEM29845.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407] gi|228788221|gb|EEM36176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821056|gb|EEM67076.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 378 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 140/335 (41%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + I + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-Y 294 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK D K+ Sbjct: 295 TKNSFSVPLTEEERKNVLLKVELDKSITLEDGVKV 329 >gi|218233888|ref|YP_002366673.1| beta-lactamase [Bacillus cereus B4264] gi|218161845|gb|ACK61837.1| beta-lactamase [Bacillus cereus B4264] Length = 317 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ IS A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKISAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|229096494|ref|ZP_04227465.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29] gi|229115468|ref|ZP_04244874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3] gi|228667881|gb|EEL23317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3] gi|228686700|gb|EEL40607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29] Length = 317 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPSKYIPPKVDAKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S+ A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSEKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLEMSEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYTF 313 >gi|229007696|ref|ZP_04165288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228753564|gb|EEM03010.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] Length = 426 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 156/364 (42%), Gaps = 33/364 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I+ + +LS ++ + + L D +TG ++ E PD AS Sbjct: 3 MRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLL 111 ++KL+ Y V +KE K T + IS A E SN F+KG T+ + Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYHSI 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 I+ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 123 IIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV----G 208 + +ARDM ILS I T +P+ + + + K + N NW + Sbjct: 183 DPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302 Query: 269 DRK-KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 +K KI+ + + V E+ T + + + +S D + + Sbjct: 303 KQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSKPPYTISTEADKSLSQDGKVVA 362 Query: 328 LLKN 331 +K Sbjct: 363 PIKK 366 >gi|42780668|ref|NP_977915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] gi|42736588|gb|AAS40523.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATCC 10987] Length = 374 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 30/353 (8%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN---- 287 + LI V L A +L GF + + + ++ +N Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 291 Query: 288 ----EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP +E +K ++ K AK K+ + +I + K+ ++ Sbjct: 292 KNSFAVPLTEQE----RKNVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 340 >gi|30261566|ref|NP_843943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Ames] gi|47777937|ref|YP_018113.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184396|ref|YP_027648.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|170706241|ref|ZP_02896702.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|229603016|ref|YP_002865975.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] gi|30255420|gb|AAP25429.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str. Ames] gi|47551642|gb|AAT30588.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178323|gb|AAT53699.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. Sterne] gi|170128775|gb|EDS97641.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0389] gi|229267424|gb|ACQ49061.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. A0248] Length = 374 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 149/336 (44%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K + + THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + +D K+ Sbjct: 292 KNSFSVPLTEEEKKSVVLKVEL--DKSAKLVDGVKV 325 >gi|311070657|ref|YP_003975580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310871174|gb|ADP34649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 441 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 144/367 (39%), Gaps = 32/367 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M F V+ + A +++ ++G ++ D AS+T Sbjct: 10 MMSFFVLTLIVTCLAPMSRAKAASDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIV 113 K+MT Y++ + E K T E SN +K T+ + + Sbjct: 70 KMMTEYLLLEAIDEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAI 129 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--------- 164 SAN A+A+AE + +E KFV MN +K LGL+ F+NA G+ + Sbjct: 130 YSANAAAIALAEVMAGSETKFVDKMNAKAKELGLTNFKFVNATGLENKDLHGKQPEGTSV 189 Query: 165 -----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAV----GTF 210 +A+DMAIL+ R+ TD+P+ + I + + PN N+ + + Sbjct: 190 DEESEVSAKDMAILADRLITDYPEILDTASIAKTKFREGTDDEMDMPNWNFMLKGLVSEY 249 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNKT 268 G DG+KTG T ++G ++A + +I V+L A R + +L+ F N + Sbjct: 250 KGVDGLKTGSTDSAGSCFTSTAERNGMRVITVVLNAKGNIHTGRFDETKKMLNYAFDNFS 309 Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 ++ + + +S E E T+K E K +D +K+ Sbjct: 310 MKEIYAEGKQVKGHKTISVEKGKDKEVGIVTKKAFSIPVKNGDEKNYKAKVTLDKDKLDA 369 Query: 329 LKNKITK 335 K K Sbjct: 370 PVKKGAK 376 >gi|228907200|ref|ZP_04071061.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228852421|gb|EEM97214.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 378 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 140/335 (41%), Gaps = 19/335 (5%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 KYAMGNESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPN 291 + LI V L A +L GF K + I + ++ +N V Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-Y 294 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 E N +K DK D K+ Sbjct: 295 TKNSFSVPLTEEERKNVLLKVELDKSIALEDGVKV 329 >gi|228933281|ref|ZP_04096137.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826442|gb|EEM72219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L++ F Sbjct: 293 MGTEGKTKRFTETNKLMTYAF 313 >gi|47569141|ref|ZP_00239829.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] gi|47554212|gb|EAL12575.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus G9241] Length = 374 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 151/349 (43%), Gaps = 22/349 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF-----YNKTDRKKINYIIKDFYQQNLSN 287 + LI V L A +L GF N R + I + Y ++ Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGRGALAEITEKKYANHVYT 291 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + +K+++ K AK K+ + +I + K+ ++ Sbjct: 292 KNSFAVPLTEQERKDVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 340 >gi|28211671|ref|NP_782615.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] gi|28204113|gb|AAO36552.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88] Length = 419 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 26/290 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPY-----YTLLDTNTGHVIAENYPDHPWNP 53 M+++++ + LS + + A+T+K P L+D TG V+ E + P+ P Sbjct: 8 MKKYILTFLIFFLSFVCINSATINAKTSKPPSVSADGAILMDAKTGKVLYEKNINKPYPP 67 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA + L + + K S +G + + + L L++ Sbjct: 68 ASTTKIMTALLTLE-----NCNLDDEVVVGKKPPLADGSKIFIHEGEKLKVKDLLYALLL 122 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +SAND A A+AE + + F + MN +K LG + T+F+N +G+ H TTA+D+A L Sbjct: 123 ESANDAAEALAEHIGGSINDFSKLMNKRAKELGCTNTNFVNPNGLYNAKHRTTAQDLA-L 181 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAV-----GTFLGADGMKTGFT 221 + + + Y +IK + N N V F G +G KTG+T Sbjct: 182 IMKEVSQYEDYRKISNTITYKIKPTNKSKKERPLWNKNKLVQQNSKYYFKGCNGGKTGYT 241 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 S + V SA +GD LI V++ + T + S +LL+ GF N K Sbjct: 242 TQSQHSYVVSANRGDFQLIVVLIH-DSKKTFFEDSVNLLNYGFNNFELIK 290 >gi|52143467|ref|YP_083362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|118477407|ref|YP_894558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|196036868|ref|ZP_03104255.1| beta-lactamase [Bacillus cereus W] gi|196041913|ref|ZP_03109201.1| beta-lactamase [Bacillus cereus NVH0597-99] gi|196047003|ref|ZP_03114222.1| beta-lactamase [Bacillus cereus 03BB108] gi|218903102|ref|YP_002450936.1| beta-lactamase [Bacillus cereus AH820] gi|225863912|ref|YP_002749290.1| beta-lactamase [Bacillus cereus 03BB102] gi|228914571|ref|ZP_04078180.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927044|ref|ZP_04090110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945594|ref|ZP_04107944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121530|ref|ZP_04250757.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201] gi|229184187|ref|ZP_04311396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1] gi|300117552|ref|ZP_07055339.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] gi|51976936|gb|AAU18486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|118416632|gb|ABK85051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Hakam] gi|195990521|gb|EDX54502.1| beta-lactamase [Bacillus cereus W] gi|196022107|gb|EDX60795.1| beta-lactamase [Bacillus cereus 03BB108] gi|196027285|gb|EDX65904.1| beta-lactamase [Bacillus cereus NVH0597-99] gi|218535102|gb|ACK87500.1| beta-lactamase [Bacillus cereus AH820] gi|225788359|gb|ACO28576.1| beta-lactamase [Bacillus cereus 03BB102] gi|228599302|gb|EEK56913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228661994|gb|EEL17607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201] gi|228814112|gb|EEM60383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832779|gb|EEM78350.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844890|gb|EEM89932.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|298725087|gb|EFI65742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus SJ1] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L++ F Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313 >gi|228985080|ref|ZP_04145247.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774567|gb|EEM22966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEIDAKAAMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKGFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313 >gi|301053509|ref|YP_003791720.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI] gi|300375678|gb|ADK04582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar anthracis str. CI] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNEALYIEGIDGLKTGFTDSAGYCFTGTAKQGDIRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L++ F Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313 >gi|325202334|gb|ADY97788.1| penicillin-binding protein 6 precursor [Neisseria meningitidis M01-240149] gi|325207913|gb|ADZ03365.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis NZ-05/33] Length = 389 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + +++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ + L + Sbjct: 90 NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLVGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNRALQAFDTPK 289 >gi|308069547|ref|YP_003871152.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] gi|305858826|gb|ADM70614.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine carboxypeptidase) [Paenibacillus polymyxa E681] Length = 420 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 15/246 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 +L+D +G +I D ASLTK+MTA V L + +S A Sbjct: 61 AQAASLIDVTSGRIIYSTEGDRELRIASLTKIMTAIVAIEH-----GRLQDRVKVSPTAY 115 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+ + G M+L+N L L+++S ND A AIAE + TE+ FV MN+ + LGL Sbjct: 116 AKEGSSLFLQMGEQMSLENMLYGLMLRSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGL 175 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YP 201 S THF N HG+ GHY++A DMA L+ P + + + + + Sbjct: 176 SHTHFANPHGLDAEGHYSSANDMARLT-AYALHNPTFARIVKTELKKAPNPNDSWDYSWH 234 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + + GADG+KTGFT + +V+SA + + L AV L D A +L Sbjct: 235 NKNKMLRLYEGADGVKTGFTKKAFRCLVSSATRDGRQLAAVTLNDGDD---WNDHARMLD 291 Query: 262 MGFYNK 267 GF Sbjct: 292 YGFRYY 297 >gi|229090965|ref|ZP_04222189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42] gi|228692366|gb|EEL46101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QG+ +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L++ F Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313 >gi|206967983|ref|ZP_03228939.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|206736903|gb|EDZ54050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] Length = 374 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 17/283 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M+ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAES+ + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 KYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 + LI V L A +L GF K + Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQ 274 >gi|209549400|ref|YP_002281317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535156|gb|ACI55091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 431 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 10/281 (3%) Query: 1 MRQFLVIIAMAML-----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R F I +L + + K +++ TG V+ D ++PAS Sbjct: 35 LRTFAGIALACLLPLTTGALAADSGAAGFATKAAQAYMIEAATGTVLLAKNEDQGFSPAS 94 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKL 110 L KLMT +VF + + + T +S+ A + S + +++ +K Sbjct: 95 LAKLMTMDLVFDAVTKGQITFDTEYPVSEYAWRTGGAPSRTATMFASLKSRVRVEDLIKG 154 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 + ++ AND + +AE + +E++F + M ++ LG+ F N+ G+ TAR+M Sbjct: 155 VAIQGANDSCIILAEGMAGSEQQFAESMTRRARELGMEKAEFGNSTGLPDGKSKVTAREM 214 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 L+ ++ +P YF E N N +G LGADG+ TGFT G++IVA Sbjct: 215 VTLATALQKSYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVA 274 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 S + + L + G R + + +L G R+ Sbjct: 275 SVERDGRRLFLALAGVASDKERTEEAKRVLEWGLTAFESRQ 315 >gi|229090529|ref|ZP_04221765.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] gi|228692796|gb|EEL46519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42] Length = 310 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 17/283 (6%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 + LI V L A +L GF K + Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQ 278 >gi|323490220|ref|ZP_08095437.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis MPA1U2] gi|323396116|gb|EGA88945.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis MPA1U2] Length = 452 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 40/350 (11%) Query: 4 FLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 + ++A+ M++ I P AE T L+D +G ++ E + P AS+TK+M Sbjct: 16 LIALLAVFMITGITPQQVNAEESLTIMAEAAILVDAESGKILYEKNAEKPLGVASMTKMM 75 Query: 61 TAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y++F ++E K ++ + + SN F++ + T+ + + + SA Sbjct: 76 TEYLLFEAIEEGKVAWDQEYQVTDYTYRISQDMRLSNVPFREDGSYTIKEMYEAMAIFSA 135 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162 N + IAE++ TE +FV+ MN +K +GL T F+N+ G+ Sbjct: 136 NAATIGIAETIAGTESEFVELMNEKAKEMGLEETTFVNSTGLSNSSLMGMHPEGTKETDE 195 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV----GTFLGA 213 + AR +A L+ + D+P+ + +I + + N N + + G Sbjct: 196 NIMPARAVAKLTKILLDDYPEVLETTKIPLKMFREGTSDETRMENWNSMLPGLIYEYEGV 255 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNK 267 DG+KTG T +G++ +A + D IAV++GA+D R + L GF Sbjct: 256 DGLKTGSTDFAGYSFAGTAKRDDTRFIAVVMGAVDSEGAGSYKARFDATRVLFDYGFDEF 315 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 T + I + F +Q+ + E+V KE + T M DKE Sbjct: 316 TKEELIPAGYQ-FKEQDTLEVEKGVEEKVAIAVKEPV---TMMVRTADKE 361 >gi|85708665|ref|ZP_01039731.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1] gi|85690199|gb|EAQ30202.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1] Length = 403 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P A+T +LP L+D +G V+ D + PAS+TK+MT + F ++E Sbjct: 44 PAPVPAQT-ELPIALLVDVTSGQVLYSRNADRRFVPASITKVMTLFHAFELIEEGDLDPR 102 Query: 78 TPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 + +S E S G + +D+ L + SAND + +AE + + Sbjct: 103 QTLVMSDEVWEEWGGEGSTMWINAGDRVAVDDLLTGIANISANDGSAMLAEGQAGSISAW 162 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ-YMHYFQIKG 192 + MN +++L + +HF +G G +TTA D+ L+ + + PQ Y Y G Sbjct: 163 LDGMNQRARSLEMVNSHFGTPNGWPDEGRTFTTASDLVKLAQALISRHPQKYARYIGKPG 222 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + N + +G GADG+KTG+T SG V SA + Q L+ V+ G + R Sbjct: 223 FRYNDIEQFNRDPMIGRVAGADGIKTGYTNESGLGYVGSAKRDGQRLVVVVAGISRGSIR 282 Query: 253 NKVSASLLSMGFYNKTDRKK 272 + + L+ GF + Sbjct: 283 ARAARDLIEWGFDAFDRERL 302 >gi|294496884|ref|YP_003560584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|295702251|ref|YP_003595326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] gi|294346821|gb|ADE67150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|294799910|gb|ADF36976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] Length = 451 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 146/351 (41%), Gaps = 40/351 (11%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN--------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 +Q + +IA+ +++++F + A + L++ +TG V+ D Sbjct: 7 KQLICVIAVMLMASVFFVSTQASAAPKTDDIGVEADAAILVEASTGKVLYGKNTDALLGI 66 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALK 109 AS+TK+MT Y+V +K+KK + +SK A+ +Y SN + T+ Sbjct: 67 ASMTKMMTEYLVLESIKDKKLSWDQRVPVSKYAAKISQDYGLSNVPLIENQKYTVKELYD 126 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------- 160 + + SAN A+A+AE++ +E+ F++ MN T+K L + + F+N+ G+ Sbjct: 127 AMAIYSANGAAIALAEAVSGSEENFIKLMNETAKRLNMGESKFVNSTGLSNSLLKGMYPK 186 Query: 161 -----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVG-- 208 + +AR +A L++ + D+P+ + + + K N N + Sbjct: 187 GTKEEDENLLSARAVATLAYHLIHDYPESLEVAKTPSKMFRQGQQGETKMNNWNKMLPGF 246 Query: 209 --TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-----DRNTRNKVSASLLS 261 + G DG+KTG T +G +A + I V++ A R + +L Sbjct: 247 SAAYSGVDGLKTGHTDFAGQCFTGTAERNGVRYITVVMNAKENGKSTEAARFSQTKKILD 306 Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 F + ++ + + + + E + + + + ++ Sbjct: 307 YAFSHFQLKEVVPANGEIKGHETIDVAKGKSKEASVSPKNSVKIITEKGQK 357 >gi|313668657|ref|YP_004048941.1| D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica ST-640] gi|313006119|emb|CBN87580.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica 020-06] Length = 388 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 3/256 (1%) Query: 19 FLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 S +T + + ++D + ++ D P PA+L +LMTAY+VF LK Sbjct: 33 AASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRP 92 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFV 135 + I ++A + S + G ++ D LK +IV SAND A+ +A L + + FV Sbjct: 93 EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 + MN ++ LG+ T F N G+ Q +TARD+A+L+ + DFP+Y F IK + Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + + N N + +G+K G T + G+N+ S + ++ + LG+ TR Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272 Query: 256 SASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 273 NSKLLNRALQAFDTPK 288 >gi|229102587|ref|ZP_04233291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28] gi|228680814|gb|EEL34987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28] Length = 317 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPSKYIPPKVDAKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S+ A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSEKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLEMSEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNVNVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYTF 313 >gi|229155136|ref|ZP_04283248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] gi|228628263|gb|EEK84978.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342] Length = 378 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 30/353 (8%) Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + ++ +++ P + A+ N L++ +G V+ P AS+ Sbjct: 5 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + +++S A S K G + L++ + L+++S Sbjct: 65 TKIMTALLAAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 119 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 178 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 179 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN---- 287 + LI V L A +L GF + + + ++ +N Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 295 Query: 288 ----EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP +E +K ++ K AK K+ + +I + K+ ++ Sbjct: 296 KNSFAVPLTEQE----RKNVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 344 >gi|310642604|ref|YP_003947362.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] gi|309247555|gb|ADO57122.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus polymyxa SC2] Length = 420 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 15/246 (6%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 +L+D +G +I D ASLTK+MTA V L + +S A Sbjct: 61 AQAASLIDVTSGRIIYSAEGDRELRIASLTKIMTAIVAIEH-----GRLQDRVKVSSTAY 115 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S+ + G MTL+N L L+++S ND A AIAE + TE+ FV MN+ + LGL Sbjct: 116 AKEGSSLFLQMGEQMTLENMLYGLMLRSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGL 175 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YP 201 + THF N HG+ GHY++A DMA L+ P + + + + + Sbjct: 176 NHTHFANPHGLDADGHYSSANDMARLT-AYALHNPTFARIVKTELKKAPNPNDSWDYSWH 234 Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261 N N + + GADG+KTGFT + +V+SA + + L AV L D A +L Sbjct: 235 NKNKMLRLYEGADGVKTGFTKKAFRCLVSSATREGRQLAAVTLNDGDD---WNDHARMLD 291 Query: 262 MGFYNK 267 GF Sbjct: 292 YGFRYY 297 >gi|296332253|ref|ZP_06874715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674955|ref|YP_003866627.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150567|gb|EFG91454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413199|gb|ADM38318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 382 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 27/354 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F + M M+S + +++ A ++D +G V+ AS Sbjct: 1 MRIFKKAVFMVMISFLIANVNVNTAHAAIDVSAKSAIVIDGASGRVLFAKDEHEKRRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + +T+S NA S +G + L + + L+++S Sbjct: 61 ITKIMTAVLAIES-----GKMDETVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE + + FV MN ++ LG+ T F N HG+ H HY+TA DMA+L+ Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMENTRFQNPHGLDDHENHYSTAYDMALLT 175 Query: 175 -WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 + +K Q + +I E + N N + + + G KTG+T + +V++A Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYRYSTGGKTGYTKLAKRTLVSTA 235 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----------RKKINYIIKDFY 281 + LIAV + D + + F + K Y K F Sbjct: 236 SKDGIDLIAVTINDPDD---WDDHMKMFNYVFDHYQTYLIAKKGDIPKLKGTFYESKAFI 292 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 +++++ + +E Q ++ ++ K + KI I K Sbjct: 293 KRDITYLLTEEEKEDVNIQTTLLKPKKTWEKDASKIPDIVGHMKIMFNGETIAK 346 >gi|227822156|ref|YP_002826127.1| penicillin binding protein [Sinorhizobium fredii NGR234] gi|227341156|gb|ACP25374.1| penicillin binding protein [Sinorhizobium fredii NGR234] Length = 384 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 6/277 (2%) Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+ F ++ I A++ + A K L+D TG V+ D P PASL KL Sbjct: 3 MKWFAIVGILAAIVQGEAAAQTPAFDTKAKQIYLIDAETGTVLFARGEDEPVPPASLAKL 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 M VVF L++ + +S++A S S + + + ++ V+ Sbjct: 63 MAMEVVFEALEKGELTQEAVFPVSEHAWRTGGAPSGTSTMFAAIKSQVRVADLIQGATVQ 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND + +AE + +E F Q MN +++LG+ F NA G+ G+ T R++ LS Sbjct: 123 LANDACIILAEGMAGSEAAFAQRMNARARDLGMPVATFKNATGLPDPGNRVTMRELVTLS 182 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 ++ + + E N N + +G DG+ TGF GF++ AS + Sbjct: 183 RHLREAHANFYRLYAQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAASMQR 242 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GD+ + + G R + S +L N R+ Sbjct: 243 GDRRVYLAMGGLETDKERTEESRRVLDWAMTNFEKRR 279 >gi|302388530|ref|YP_003824352.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302199158|gb|ADL06729.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 519 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 147/353 (41%), Gaps = 41/353 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAENYPD 48 M Q + ++ L +F S ET+ + L+D +TG V+ Sbjct: 1 MTQIIKKFSIFFLCLLFLVSSNTETSLAAEDWPSGISVQAQGAILMDADTGTVLWGQNIH 60 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLD 105 + + PAS+TK+MTA +V L +T S NA E SN+ +G +++ Sbjct: 61 NQYFPASITKVMTALLVIE-----NCSLDETVTFSHNAVYNVESGSSNAGINEGDKLSVK 115 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 + L L++KSAN+ A A+AE + + + F MN +K LG + THF N G+ HYT Sbjct: 116 DCLYALLLKSANESANALAEHVAGSTEAFADMMNTRAKELGCTNTHFSNPSGLNNPEHYT 175 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAV----GTFLGA 213 + DMA+++ P + ++ YP + G Sbjct: 176 SPYDMALIARAAFN-NPVFGEIDSTTYYKLPPNSINKEGLTIYPGHKMMRKSTPYYYPGI 234 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 G KTG+T +G +V A + LI +IL + +LL+ GF N K Sbjct: 235 VGGKTGYTTLAGNTLVTCAERNGLKLITIILKGSTPQ-YWSDTKNLLNFGFDNFVSLKAA 293 Query: 274 NYIIKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325 + +++ S+ ++S + T+ E + + + K + F D + Sbjct: 294 D------HEKTYSSITSDLSFSGLTITKPEALILDPDSRIILPKTASFSDAKP 340 >gi|324325585|gb|ADY20845.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 30/353 (8%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ ++G V+ P AS+ Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 61 TKIMTALLAAES-----GKMKEKVLVSNEAVRVEGSAIYLKAGQKVKLEDLVYGLMLRSG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 174 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 R + F K + YP N + A G KTGFT +G +V +A Sbjct: 175 RYAMGNETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN---- 287 + LI V L A +L GF + + + ++ +N Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 291 Query: 288 ----EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 VP +E +K ++ K AK K+ + +I + K+ ++ Sbjct: 292 KNSFAVPLTEQE----RKNVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 340 >gi|239629143|ref|ZP_04672174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519289|gb|EEQ59155.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 530 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 126/282 (44%), Gaps = 23/282 (8%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 + + P + + ++D +TG V+ D + PAS+TK++TA +V Sbjct: 23 VFTIRALAAPEWPSDVSIQADGGIVMDADTGTVLYGKNMDQQYYPASITKILTALIVLE- 81 Query: 69 LKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 + L ++ S + E S++ +G +T+ + L L++ SAN+ A A+A Sbjct: 82 ----RCDLDEMVSFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLYALMLASANESANALAC 137 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + + ++F + MN + +LG + +HF N G+ HYTTA DMA+++ P+++ Sbjct: 138 HVSGSREEFAKLMNEKAASLGCTGSHFANPSGLNDENHYTTAHDMALIAREAIK-NPEFL 196 Query: 186 HYFQIKGL-------EIKGKKYPNTNWAVGT-----FLGADGMKTGFTCASGFNIVASAI 233 + +G N + + + GA KTG+T +G +V A Sbjct: 197 AINGTRSYKLAPTKRTPEGGYVANHHKMLNKNESVYYPGAFAGKTGYTSLAGNTLVTCAK 256 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 + +LIAV+L + + ++ F N K ++Y Sbjct: 257 KDGMTLIAVVLNG--HQSHYSDTKAMFDFAFRNFQSLKAVDY 296 >gi|254673307|emb|CBA08444.1| putative penicillin-binding protein precursor [Neisseria meningitidis alpha275] Length = 389 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 6/260 (2%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I SAND A+ +A L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + K + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDRK 271 R ++ LL+ K Sbjct: 270 RASDNSKLLNRALQAFDTPK 289 >gi|218896938|ref|YP_002445349.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228964967|ref|ZP_04126069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|218545350|gb|ACK97744.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus G9842] gi|228794708|gb|EEM42212.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 317 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|116252224|ref|YP_768062.1| penicillin-binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256872|emb|CAK07966.1| putative penicillin-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 397 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 126/277 (45%), Gaps = 14/277 (5%) Query: 9 AMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 A+ +L+ + PF + A K+ +++ TG V+ D ++PASL KL Sbjct: 5 ALRLLACLMPFATGAFAADGGAAGFATKVAQAYMIEATTGTVLLAKNEDQGFSPASLAKL 64 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVK 114 MT +VF L + + L T +S+ A + S + +++ +K + ++ Sbjct: 65 MTMDLVFEALTKGQITLDTEYPVSEYAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQ 124 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND + +AE + +E++F M ++ LG+ F N+ G+ TAR+M L+ Sbjct: 125 GANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLA 184 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 ++ +P YF E N N +G +GADG+ TGFT G++IVAS + Sbjct: 185 AALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDIGADGLATGFTEGEGYSIVASVER 244 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + L + G R + + +L G +R+ Sbjct: 245 DGRRLFVALAGIASDKERTEEAKRVLEWGLTAFENRQ 281 >gi|229043743|ref|ZP_04191445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676] gi|228725596|gb|EEL76851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676] Length = 317 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTATDVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|167773011|ref|ZP_02445064.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM 17241] gi|167664944|gb|EDS09074.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM 17241] Length = 763 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 14/257 (5%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 L+D +TG ++ E + PAS+TK+MT + K + T + Sbjct: 56 PPELYAESAILVDADTGQILLEKNMNKKMYPASITKIMTCLLAMERAKPGDVVTVTDEVV 115 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 ++ ++ G +T++ ++V+SAND A +A + + + F MN+ + Sbjct: 116 AE--VPRDTTHIALTGGEQLTVEQLEYAMMVESANDAASVLAAHISGSTQAFAMLMNDRA 173 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------ 196 K LG THF NA+G+ HYT+A DMA+++ +P++ EI Sbjct: 174 KELGAKDTHFTNANGLPDPSHYTSAYDMALITRAAMQ-YPEFRSLAGTTSYEIPPTNKQS 232 Query: 197 -GKKYPNTNW---AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD-RNT 251 ++ N N+ T+ GA KTG+T +G +V A + +LI +++ + + Sbjct: 233 ETRRLNNRNYMFTLNDTYPGAFAGKTGWTEEAGHTLVTLAERDGVTLICIVMHSDGVVDA 292 Query: 252 RNKVSASLLSMGFYNKT 268 + S ++L GF N T Sbjct: 293 QYIDSTAILDYGFDNYT 309 >gi|326791358|ref|YP_004309179.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] gi|326542122|gb|ADZ83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum DSM 5427] Length = 382 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 22/280 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ +++ + + S + L A + + L++ +G V+ E P AS Sbjct: 1 MKKKIILSFILIGSMLVSSLCYANSELPKVRAKGAVLIEQESGRVLYEKNGYEPLAMAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT + K L +TISK AS PP K G L + L L+++S Sbjct: 61 TKIMTCILAIE-----KGNLLDVVTISKRASSAPPVKLHLKVGEKQRLGDLLYALMLQSD 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+AE + + + F + M +K +G T F +G+ GHY +A DM ++ Sbjct: 116 NDAAVAVAEHIAGSVEAFCEQMTEKAKEIGAEHTSFKTPNGLDAEGHYASAYDMTLIG-A 174 Query: 177 IKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNI 228 P+++ ++I N N ++ GA+G+KTGFT +G Sbjct: 175 YALKNPEFVKIITTATIQIPTIPTEGSHTYGLQNKNRFFYSYEGANGIKTGFTNKAGHCF 234 Query: 229 VASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGF 264 V +A + D LI LG+ + + ++++ GF Sbjct: 235 VGAAYKNDMQLIGAALGSGWGKAGKTQKYTDVINMMNYGF 274 >gi|225420336|ref|ZP_03762639.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme DSM 15981] gi|225041022|gb|EEG51268.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 129/298 (43%), Gaps = 36/298 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 M++ + +A P + A T + +++ TG V+ D P+ P Sbjct: 1 MKRLFA-LCLAFALCAVPMTAWAAPAWPSGVTIQADGGIVMEAGTGTVLYGKNMDQPYYP 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKL 110 AS+TK++TA +V L +T S +A E S++ +G +T+ + L Sbjct: 60 ASITKILTALIVIESCD-----LDEIVTFSHDAVYNVEADSSSAGIDEGDQLTVRDCLYA 114 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ SAN+ A A+AE + T + F MN + +LG + +HF N G+ HYTTA DM Sbjct: 115 LLLASANESANALAEHVSGTREAFADLMNQRAASLGCTGSHFANPSGLNDENHYTTAHDM 174 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI------------KGKKYPNTNWAVGT-----FLGA 213 A ++ P ++ + + G N + + GA Sbjct: 175 AKIAQAAIQ-NPTFVEICGSRTYRLPNMKRAPAEKFPDGYPIANHHKMWNRNDAAYYNGA 233 Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 KTG+T +G +V A +GD +LIAV+L T + ++L GF N K Sbjct: 234 FCGKTGYTSLAGNTLVTCAKRGDMTLIAVVLNG--HLTHYTDTKAMLDFGFGNFQSLK 289 >gi|228971991|ref|ZP_04132609.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978601|ref|ZP_04138974.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis Bt407] gi|228781097|gb|EEM29302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis Bt407] gi|228787705|gb|EEM35666.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326939691|gb|AEA15587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar chinensis CT-43] Length = 317 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|229079157|ref|ZP_04211706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2] gi|228704174|gb|EEL56611.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2] Length = 317 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFENASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|49474221|ref|YP_032263.1| penicillin-binding protein [Bartonella quintana str. Toulouse] gi|49239725|emb|CAF26104.1| Penicillin-binding protein [Bartonella quintana str. Toulouse] Length = 387 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 143/344 (41%), Gaps = 14/344 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR L I+ I A+ LLD +T ++ E D P+ PASL K Sbjct: 1 MRTTLRILFTLFWMLILDGWGRAQDFQTSASQLLLLDNDTDTILFEKQSDIPFFPASLVK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 LMTA VVF LK+ T +S+NA + K + +++ + L+ LI+ Sbjct: 61 LMTAEVVFYQLKQGLLSSTQTFEVSENAWRKGGAPSGTTTMFAKVKTKISVSDLLRGLII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 + ND A+ +AE + +E F + MN ++ LGLS +HF+N G+ + G T RDM +L Sbjct: 121 VNGNDAAITLAEGISGSEADFAKLMNQRARTLGLSHSHFVNPTGLSEEGQLVTLRDMIVL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I +P Y + N N + +G +G G++ GF++V +A Sbjct: 181 ARHIAHTYPNYYALYSEPNFTWNKIFQRNKNPLISKEMGVEGFAFGYSEKEGFSMVVAAY 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVP 290 + + L I G D K +L G F KT K + N VP Sbjct: 241 KNHRRLFLAINGLQDGKGHTKEIERILQWGMTAFDLKTIFIKGETVGHASVYGGTQNSVP 300 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 I +E + + N + K K H + +L + Sbjct: 301 LIVKEPIS----FMLSNEKKMNVKAKIKHRGPLKAPIVLGQPVG 340 >gi|229155565|ref|ZP_04283673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 4342] gi|228627883|gb|EEK84602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 4342] Length = 317 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEIDAKAVMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313 >gi|206970894|ref|ZP_03231846.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|229109442|ref|ZP_04239036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15] gi|229178383|ref|ZP_04305752.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W] gi|206734530|gb|EDZ51700.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus AH1134] gi|228605113|gb|EEK62565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W] gi|228674009|gb|EEL29259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15] Length = 317 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|52080833|ref|YP_079624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52786204|ref|YP_092033.1| DacB [Bacillus licheniformis ATCC 14580] gi|319645208|ref|ZP_07999441.1| DacB protein [Bacillus sp. BT1B_CT2] gi|52004044|gb|AAU23986.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus licheniformis ATCC 14580] gi|52348706|gb|AAU41340.1| DacB [Bacillus licheniformis ATCC 14580] gi|317393017|gb|EFV73811.1| DacB protein [Bacillus sp. BT1B_CT2] Length = 384 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 31/335 (9%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNP 53 MR FL A+ + S + A+ ++D +G V+ Sbjct: 1 MRFFLKQAAAAIMICSLLCSSYETAQAQPSLHISAKSAIVMDGQSGRVLFAKDEHEKRRI 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS+TK+MTA + L +T+S A S+ G + L + + L++ Sbjct: 61 ASITKIMTAILAVES-----GKLDETVTVSDRAVRTEGSSIYLTSGQKVKLKDLVYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172 +S ND AVAIAE + + + FV MN + LG+ T F N HG+ H HY++A DMA+ Sbjct: 116 RSGNDAAVAIAEHVGGSLEGFVYMMNQKAAELGMENTLFRNPHGLDDHPDHYSSAYDMAL 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAV-GTFLGADGMKTGFTCASGFNIV 229 L+ T Y K + + + + N N + G + + G KTG+T + +V Sbjct: 176 LTKYAMT-NETYKKIAGTKRYKAETMQGIWRNKNKLLTGLYKYSTGGKTGYTKLAKRTLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 +++ + LIAV + A D ++ + F + YII E+ Sbjct: 235 STSSKDGTDLIAVTINAPDD---WNDHMNMFNYVFGHYKT-----YIIAK------KGEI 280 Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 P + + + I T + ++KE +D E Sbjct: 281 PKLKDSFYGNKAFIKRDVTYLLNEEEKEDVKVDIE 315 >gi|229127385|ref|ZP_04256380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|229144594|ref|ZP_04272996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST24] gi|296502572|ref|YP_003664272.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] gi|228638834|gb|EEK95262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228656067|gb|EEL11910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|296323624|gb|ADH06552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171] Length = 317 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|228900575|ref|ZP_04064797.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228859058|gb|EEN03496.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 309 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305 >gi|168179469|ref|ZP_02614133.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|182669511|gb|EDT81487.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum NCTC 2916] Length = 415 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 56/385 (14%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFCKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + + F + MN +K LG + T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLENFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------------ 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFTLDLLYPKDSYVT 293 Query: 269 -----DRKKINYIIKDFYQQNLSNE--VPNISEEVCTT-----QKEIINYNTQMKEAKDK 316 + K Y KDFY ++ P++ E +K + + + + Sbjct: 294 TYTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVVLSANLSRGSNS 353 Query: 317 ESHF-----IDFEKITLLKNKITKK 336 +D E + L N + K Sbjct: 354 VGSLTLKSGVDHESVNLFTNNVISK 378 >gi|47568352|ref|ZP_00239054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] gi|47555045|gb|EAL13394.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241] Length = 317 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G VI + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEIDAKAAMIIDASNGDVIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQESDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313 >gi|146296850|ref|YP_001180621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410426|gb|ABP67430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 151/352 (42%), Gaps = 34/352 (9%) Query: 4 FLVIIAMAMLS---NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 LVI+++ +LS + L ++ TG ++ E D AS TK+M Sbjct: 10 LLVIVSLRILSYSNECYAGLKCDIQVTAKSAIAIEWITGKILFEKNKDLKLPMASTTKIM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 TA + L I I A P S+ +KG + + L L++ S ND A Sbjct: 70 TAILAIENCD-----LNKEIEIPAQAIGVPGSSIYLEKGERLKIIELLYGLMLASGNDAA 124 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-SWRIKT 179 A+A S+C KKFV MN +K LGL T F + HG+ + HYTTA D+A L ++ +K Sbjct: 125 AALAISVCGDVKKFVNLMNKKAKELGLENTMFSSPHGLEEGEHYTTAHDLARLTAYAMKN 184 Query: 180 DFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + + K + + Y N N + ++ GA+G+KTGFT +G +V SA + Sbjct: 185 QTFREIVSTTQKEIRWTTRPYSRVLKNKNKMLKSYQGAEGVKTGFTKRAGRCLVTSACRD 244 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--------------KINYIIKDFY 281 D +I V+L A D + +L + N K K N+I Sbjct: 245 DFRVICVVLNAPDM---WNDTKKILDFAYQNYKILKIARGEIGYLRVKDSKENWIKLGIT 301 Query: 282 QQNL----SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 +QN+ ++ P ++ + + T++ + + K H I L Sbjct: 302 EQNIFVLTKDQYPGLNVVISKKVSAPVKKYTEVGKLEIKYDHQTYSVPIATL 353 >gi|241204717|ref|YP_002975813.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858607|gb|ACS56274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 397 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 14/277 (5%) Query: 9 AMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 A+ +L+ + PF + A K +++ TG V+ D ++PASL KL Sbjct: 5 ALRLLACLMPFATGAFAADGGAAGFATKAAQAYMIEAATGTVLLAKNEDQGFSPASLAKL 64 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVK 114 MT + F L + + L T +S+ A + S + +++ +K + ++ Sbjct: 65 MTMDLAFEALTKGQITLDTEYPVSEYAWRTGGAPSRTATMFASLKSRVRVEDLIKGVAIQ 124 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND + +AE + +E++F M ++ LG+ F N+ G+ TAR+M L+ Sbjct: 125 GANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLA 184 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 ++ +P YF E N N +G LGADG+ TGFT G++IVAS + Sbjct: 185 AALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVER 244 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + L + G R + + +L G +R+ Sbjct: 245 DGRRLFVALAGIASDKERTEEAKRVLEWGLTAFENRQ 281 >gi|160880714|ref|YP_001559682.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] gi|160429380|gb|ABX42943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium phytofermentans ISDg] Length = 429 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 15/247 (6%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 L+D + G V+ AS TK+MT VV KA L +T++ NA++ Sbjct: 77 SACLMDASNGRVLYGKDAYKEMPMASTTKIMTLLVVLE-----KANLDDVVTVTSNAAKQ 131 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P + G L + L L+++S ND AVAIAE + + + F M +K LG + Sbjct: 132 PDVQLNIQTGEQYILRDLLYSLMLESHNDTAVAIAEHVGGSVEGFCNMMTEKAKELGANH 191 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GKKYPNT 203 T F +G+ GHYTTARD+++++ P++ + N Sbjct: 192 TSFKTPNGLDADGHYTTARDLSLIASYAIK-NPEFCKIVGTATYQFNEVNHKRSFNVNNR 250 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLL 260 + + GA G+KTGFT +G+ V + ++L++ +LG+ + + + L+ Sbjct: 251 DRFLYMMKGAIGIKTGFTGKAGYCFVGAVNIDGKTLVSTVLGSGWPPHKTYKWADTTKLM 310 Query: 261 SMGFYNK 267 G N Sbjct: 311 EYGLNNF 317 >gi|228939114|ref|ZP_04101709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228958264|ref|ZP_04119992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801423|gb|EEM48312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228820537|gb|EEM66567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 309 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305 >gi|251796370|ref|YP_003011101.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] gi|247543996|gb|ACT01015.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus sp. JDR-2] Length = 393 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 124/279 (44%), Gaps = 21/279 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY------TLLDTNTGHVIAENYPDHPWNPA 54 +R+ + + A L F + PY+ L+D +G ++ D A Sbjct: 6 LRRIGIALWAASLIWGTSFTASVYAAPNPYHTSANGSALVDVKSGRILYSENGDQSMRIA 65 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 SLTK+MTA V L+ + S A S+ + G MTL N L L+++ Sbjct: 66 SLTKIMTAIVAIEH-----GKLSERVKTSSRAVGKEGSSIYLQLGEEMTLLNMLYGLMLR 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A AIAE + +E+ FV MN ++ LGL+ T F N HG+ GHY++A D+A L+ Sbjct: 121 SGNDAATAIAEHVGGSEEGFVHLMNEKAEMLGLTHTQFKNPHGLDVEGHYSSANDLAKLT 180 Query: 175 WRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 P + K + + N N + + GADG+KTG+T + + Sbjct: 181 -AYALRNPVFAEIVSTKVKSVPNPHEKWQYSWTNKNKMLAMYEGADGVKTGYTKKALRCL 239 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 V+SA + Q L AV L D +L GF + Sbjct: 240 VSSATRDGQQLAAVTLNDRDD---WVDHRQMLDWGFKHY 275 >gi|228952354|ref|ZP_04114442.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807350|gb|EEM53881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 317 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313 >gi|229087877|ref|ZP_04219989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] gi|228695432|gb|EEL48305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44] Length = 426 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 150/350 (42%), Gaps = 36/350 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR+ L I+ +LS ++ + + L D +TG ++ E PD AS Sbjct: 3 MRKILSILLAFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLL 111 ++KL+ Y V +KE K T + IS A E SN F+KG T+ + Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELYHSI 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158 ++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEYAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182 Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV----G 208 + +ARDM ILS I T +P+ + + + K + N NW + Sbjct: 183 DPNGENSLSARDMGILSKIIITKYPEMLADTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302 Query: 269 DRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 +K K N I +++ P V T + +Y + K Sbjct: 303 KQKLKIDKNNTISVVKGKEDTVTVTPEKEITVITQKGSKPSYKISTEADK 352 >gi|229069527|ref|ZP_04202816.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185] gi|228713666|gb|EEL65552.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185] Length = 309 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 224 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305 >gi|228920684|ref|ZP_04084027.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838985|gb|EEM84283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 309 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 225 QSQLAFNNINVISTNDMLNRNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G ++ R + L+S F Sbjct: 285 MGTSNKTKRFTETNKLMSYAF 305 >gi|304387808|ref|ZP_07369982.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ATCC 13091] gi|304338073|gb|EFM04209.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis ATCC 13091] Length = 389 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 2/259 (0%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 ++ P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 32 AHAAPTLQTPETLTAAH-IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGN 90 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEK 132 + I ++A S + T++ D LK +I SAND A+ +A L + + Sbjct: 91 IRSEENLKIPESAWASEGSRMFVRPCDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIE 150 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 151 NFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKS 210 Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252 + K + N N + +G+K G T + G+N+ S + ++ + LG+ R Sbjct: 211 FKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIR 270 Query: 253 NKVSASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 271 ASDNSKLLNWALQAFDTPK 289 >gi|229166411|ref|ZP_04294167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228616985|gb|EEK74054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 382 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 21/336 (6%) Query: 1 MRQFLVIIAMA-MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 MR+ VII + M +++ P + A+ N L++ +G V+ P AS+ Sbjct: 9 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQGSGRVLYGKAEHEPQKIASI 68 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA + + + +S A S K G + L++ + L+++S Sbjct: 69 TKIMTALLAAES-----GKMKEMVAVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 123 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSW 175 ND A IAE++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ Sbjct: 124 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT- 182 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASA 232 + + F K + YP N + A G KTGFT +G +V +A Sbjct: 183 KYAMGNETFKGIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 242 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-P 290 + LI V L A +L GF K + + + ++ +N V Sbjct: 243 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYT 299 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 S V T++E + +++ DK + D KI Sbjct: 300 KNSFSVPLTEEERKSVLLKVEL--DKSAKLTDGVKI 333 >gi|172056057|ref|YP_001812517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum 255-15] gi|171988578|gb|ACB59500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum 255-15] Length = 415 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 133/282 (47%), Gaps = 17/282 (6%) Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ + + + + P AET + Y ++D TG ++ D PAS+ Sbjct: 1 MKRLFTLFLSVLILTAGGQPMTGHAETPDIQAESYIMVDAVTGKILLAEQADLALPPASM 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113 TKLMT Y+V +++KK + S+ ++ P + +T T+ + Sbjct: 61 TKLMTLYLVRQQIEQKKLSWNQTVRPSEKVLKLAKTPGIARLPIRKTTYTIRELYDAAFI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------HGHYTTA 167 KSAND AV +AE + TEK+FV+ MN T+ LG+ T + NA G+ + TA Sbjct: 121 KSANDAAVLLAEVMAGTEKQFVERMNETAVALGMEDTEYANASGLDAVDATLPGTNLMTA 180 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCA 223 D+++L R D+P + + + I G+K N+N + + G GMKTG T Sbjct: 181 MDISLLIIRYIQDYPDVLDVTKRSFITINGEKVENSNKMLPRQPYAYSGMRGMKTGTTDL 240 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +G+ + A +G+ +L++V++ R + LL GF Sbjct: 241 AGYCFASVATRGNLTLVSVVMRTTSDKARFAETKKLLDYGFS 282 >gi|332981601|ref|YP_004463042.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] gi|332699279|gb|AEE96220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis 50-1 BON] Length = 439 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 148/347 (42%), Gaps = 43/347 (12%) Query: 1 MRQFLVIIAMAML----SNIFPFLSIAE-----------------TNKLPYYTLLDTNTG 39 M++ L++I M +L + ++ AE L+D TG Sbjct: 1 MKKKLLVIPMLILYILALAAYIPVAYAEPTSNDTLADDATVLSPPAVSAKNLILIDAKTG 60 Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTF 96 + + PD PAS+TK++TA + + L +TI + AS S Sbjct: 61 NALYSINPDQKAYPASITKILTAAIALE-----QGNLKDVVTIDEEASLGIPAGSSAIVM 115 Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156 KG TL+ L L++ S ND AVAIA+ + T +FV MN +K G +HF N H Sbjct: 116 DKGEQFTLEQLLYGLMLISGNDAAVAIAKHISGTTDEFVNLMNQKAKEWGAKNSHFANPH 175 Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-------KGLEIKGKKYPNTNW---- 205 G HYTTA DMA+++ T P++ K L +++ N N+ Sbjct: 176 GFHNDNHYTTAYDMAMIARHAMTI-PKFRDIVSTTLYLDIPKTLRGDQRRWDNINFFVQP 234 Query: 206 -AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + GA G+KTG+T + +VASA LIAV++G + K +A+L+ GF Sbjct: 235 NSKYYYKGATGIKTGYTNQAHHTLVASAQHNGTELIAVLMGEPSKPVAWKDAAALMDYGF 294 Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311 N RK I N++N + S E + + + Sbjct: 295 -NAFARKIIATKGTPLGTVNITNGSTSESIEAVLDRDIDVMVPKVSE 340 >gi|229196199|ref|ZP_04322948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293] gi|228587264|gb|EEK45333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293] Length = 317 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 130/265 (49%), Gaps = 12/265 (4%) Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 ++ + P I ++D + G +I ++ + + PAS++K+MT Y++ + Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTVYLLLENVHN 108 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168 Query: 132 KKFVQHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHY 187 K FVQ M+ +K +S F NA G+ + TA D+A L++ + D+P+ + Sbjct: 169 KDFVQLMDAKAKQFKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228 Query: 188 FQIKGLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSL 239 ++ + +TN + G DG+KTGFT ++G+ +A QGD + Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288 Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264 I V++G + R + L+S F Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313 >gi|229029678|ref|ZP_04185753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271] gi|228731620|gb|EEL82527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271] Length = 317 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 72/261 (27%), Positives = 131/261 (50%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D++ G +I ++ + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEIDAKAAMIIDSSNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV Sbjct: 113 WEDPVKMSVKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172 Query: 136 QHMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QRMNEKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QG+ +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313 >gi|261400191|ref|ZP_05986316.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC 23970] gi|269210194|gb|EEZ76649.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC 23970] Length = 388 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 3/256 (1%) Query: 19 FLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 S +T + + ++D + ++ D P PA+L +LMTAY+VF LK Sbjct: 33 AASSPQTPETLAAAHVVIDLQSRQTLSAKNIDAPAEPAALAQLMTAYLVFKNLKSGNIRP 92 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFV 135 + I ++A + S + G ++ D LK +IV SAND A+ +A L + + FV Sbjct: 93 EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195 + MN ++ LG+ T F N G+ Q +TARD+A+L+ + DFP+Y F IK + Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212 Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + + N N + +G+K G T + G+N+ S + ++ + LG+ TR Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272 Query: 256 SASLLSMGFYNKTDRK 271 ++ LL+ K Sbjct: 273 NSKLLNRALQAFDTPK 288 >gi|170755725|ref|YP_001782612.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] gi|169120937|gb|ACA44773.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] Length = 415 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 157/385 (40%), Gaps = 56/385 (14%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFPKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------------ 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFTLDLLYPKDSYVT 293 Query: 269 -----DRKKINYIIKDFYQQNLSNE--VPNISEEVCTT-----QKEIINYNTQMKEAKDK 316 + K Y KDFY ++ P++ E +K + + + + Sbjct: 294 TYTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVVLSANLSRGSNS 353 Query: 317 ESHF-----IDFEKITLLKNKITKK 336 +D E + L N + K Sbjct: 354 VGSLTLKSGVDHESVNLFTNNVISK 378 >gi|312897814|ref|ZP_07757230.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera micronuciformis F0359] gi|310621198|gb|EFQ04742.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera micronuciformis F0359] Length = 277 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 136/273 (49%), Gaps = 14/273 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +R+ + + A+L + ++ A T L+D +TG ++ + P+ +PAS TK Sbjct: 5 LRKGRMALFTALLWAVTVIVASAAVPTTGAEAACLIDADTGRILYQVNPNKWVHPASTTK 64 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++T + L PI IS+ A++ PS G +TL A++ ++V S ND Sbjct: 65 IVTMLTALDKGAD---KLDQPIHISQYAADTEPSVLGIAPGDKLTLREAMRGMMVVSGND 121 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 +AVA+AE+L T + MN + LG + THF+N +G+ HYTTA DMA ++ Sbjct: 122 VAVAVAETLGGTVGAYADMMNAEAAKLGATHTHFVNPNGLTAPKHYTTAVDMAKIAAYGL 181 Query: 179 TDFPQYMHYFQIKGLEI-----KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232 +P++ + + + + K TN + GADG+KTG+T A+G +VASA Sbjct: 182 KHYPEFKYTVSLPNYTVKYLDGRTKYVETTNRFLTSGYKGADGVKTGYTDAAGVCLVASA 241 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + +L+ + + R + ++L GF Sbjct: 242 TRNGHTLVVSLFN---DDNRWTDAPAILDYGFR 271 >gi|295109007|emb|CBL22960.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162] Length = 415 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 108/244 (44%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L++ +TG V+ + AS TK+MT + + L +T SK A+ Sbjct: 177 ALLINADTGKVLYSKNENLRHANASTTKIMTCILALE-----NSSLNDKVTFSKKAASVE 231 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS K G T + + L L+V S ND A+AIAE + + F Q MN ++ LG + T Sbjct: 232 PSKLYAKAGETFYMRDLLYSLMVPSHNDTAIAIAEHISGSTSAFAQLMNKKARELGCTNT 291 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNT 203 HF+ +G+ HYTTA D+AI++ P + K K T Sbjct: 292 HFVTPNGLDAGLNHYTTASDLAIIARYAIQ-NPTFQKLINTKSYSFKSLNTKRYFTVATT 350 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +GT G G+KTG T +G+ V + + I+V LG R + S LL+ Sbjct: 351 NALLGTQTGVVGLKTGVTNKAGYCFVGLCRSRKGNTYISVTLGGPTSAARWRDSKILLTY 410 Query: 263 GFYN 266 + Sbjct: 411 AYKK 414 >gi|116874117|ref|YP_850898.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742995|emb|CAK22119.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 445 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 44/371 (11%) Query: 1 MRQFL-----VIIAMAMLSNIF------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49 M++ + I+A+++ + F + T ++ +TG ++ D Sbjct: 1 MKKIIKKTGIAIMAVSLAVSGFLVSPKAAQAAAEPTVNANAAIAIEESTGKILYSKDADK 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLD 105 AS+TK+M Y++ + + K +TIS+ A + SN + G T+ Sbjct: 61 LMGIASMTKMMDEYLLLEAINDGKIKWDDKVTISEYAYKVSQDRSLSNVPLRLGEEYTVQ 120 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162 + + + SAN A+AIAE + +EK FV MN ++ L L F+N+ G+ Sbjct: 121 ELYEAMAIYSANGAAIAIAEKVAGSEKAFVDLMNKKAEKLKLGEHQFVNSTGLNNEDLKG 180 Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAV 207 + TAR MA L+ + D+P+ + E + N NW + Sbjct: 181 GQQVGGPKDENKMTARGMAKLAKHLIKDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLL 240 Query: 208 GTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSA 257 + G DG+KTG T +G + A+A++ +I V+L A + R + Sbjct: 241 PGLIYGRKGVDGLKTGTTDYAGMCLTATAVEDGMRVITVVLHANGGGAGEHTSARFDETN 300 Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 +L F N K++ + + V K+ + + K Sbjct: 301 KMLDYSFNNF-KVKEVQKAGSKVKDPSSIAVDKGKEDTVGLVTKDAVKLVVPKNDNAPKL 359 Query: 318 SHFIDFEKITL 328 S + + TL Sbjct: 360 STKVTLKDKTL 370 >gi|52081783|ref|YP_080574.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52787169|ref|YP_092998.1| hypothetical protein BLi03478 [Bacillus licheniformis ATCC 14580] gi|319647699|ref|ZP_08001917.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2] gi|52004994|gb|AAU24936.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580] gi|52349671|gb|AAU42305.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317390040|gb|EFV70849.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2] Length = 384 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 18/283 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLT 57 R L II + + E NK L+D +G V+ E PAS+T Sbjct: 5 RSLLFIIVLCLTLFFHSSAQAGEKNKPEIKSVSAILIDGKSGQVLYEKNSRKKMYPASIT 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+ TA L + +SKNA++ S+ ++G ++ L L+ L++ S N Sbjct: 65 KIATAIYAIE-----NGNLEDRVKVSKNAAQTEGSSVYLEEGESVPLKRLLQGLLMNSGN 119 Query: 118 DIAVAIAESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 D AIAE L + K+F +N +++ G+ THFMN HG+ HYTT+ DMA ++ Sbjct: 120 DAGTAIAEHLSGSVKQFADDLNAFIAEHAGVHDTHFMNPHGLFDKNHYTTSADMARITEY 179 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGT---FLGADGMKTGFTCASGFNIV 229 + F K + G+ + N + + + G G KTGF S +V Sbjct: 180 AMK-NKTFRALFSEKQTDWHGQTWDTTLKNHHRMLTGEIPYKGITGGKTGFVDESKHTLV 238 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 +A +G LIAV++ A + + +LL GF+N ++ Sbjct: 239 TTATRGSLDLIAVVMKADSKKMMYSDTKALLDEGFHNFETQEL 281 >gi|312622483|ref|YP_004024096.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] gi|312202950|gb|ADQ46277.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kronotskyensis 2002] Length = 374 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 31/338 (9%) Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNP 53 M+ + V+I +++ F + A K ++ TG ++ E D Sbjct: 1 MKARVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPM 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA +V K I I A P S+ +KG + + + L L++ Sbjct: 61 ASTTKIMTAILVLENCDVNK-----EIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D+A L Sbjct: 116 SSGNDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKL 175 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFN 227 + P + + K +E+ P N N + + GADG+KTGFT +G Sbjct: 176 T-AYAMRNPIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRC 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---------KINYIIK 278 +V S + D +I V+L A D + +L+ + N K K+ Sbjct: 235 LVTSVCRDDFRVICVVLNAPDM---WNDTQKILNYCYNNFKVVKLLPDEMGYVKVKNGKS 291 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 D+ + + + + E C + ++I + K+K Sbjct: 292 DWVKVGTTYKCYWVVESSCLPKLDVILQVAEAPIEKNK 329 >gi|210615749|ref|ZP_03290730.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787] gi|210150085|gb|EEA81094.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787] Length = 413 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 26/342 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 R + I+ A+L I + E + L+D ++G V+ E AS TK+ Sbjct: 20 RILVFILTCALLFGITSYAKEEEPKQLYAQSAVLMDADSGRVLFEKNGYEQKAMASTTKI 79 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT + K +T+S+NA+ P + G L + L L+++S ND Sbjct: 80 MTCILALE-----KGKPDQIVTVSENAARQPRVHLGMANGEQFYLRDLLYSLMLESHNDS 134 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSW 175 AVAIAE + T + F + MN ++ +G T+F+ +G+ H TTA ++A + Sbjct: 135 AVAIAEQVGGTVEGFARMMNEKAEKIGCKDTYFITPNGLDASDENGKHSTTAEELAKIMR 194 Query: 176 RIKTDFPQ---YMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226 PQ ++ Q + + N N +G GA KTGFT +G+ Sbjct: 195 YCIKLSPQKELFLEITQTQNHTFTDVEGKRQFSCNNHNVFLGMMDGALSGKTGFTGDAGY 254 Query: 227 NIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283 V + QG+++ I +LG N + K + +L+ G + +D Sbjct: 255 CYVGALKQGERTFIVALLGCGWPNNKGYKWKDTKALMEYGLQKYEYENV--FQKQDSSCI 312 Query: 284 NLSNEVPNISEEVCTTQKE-IINYNTQMKEAKDKESHFIDFE 324 + N +P + E I +TQ KE +D + Sbjct: 313 IVENGIPESDDIFDVAMAETKIKTDTQELPFLLKEGETVDIK 354 >gi|222086014|ref|YP_002544546.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] gi|221723462|gb|ACM26618.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium radiobacter K84] Length = 403 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 15/286 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +R+F V + P ++ A K +++ +TG ++ D +PAS Sbjct: 2 LRRFTVAFFFLVGIGCLPAVAQQAPPPAFDTKATQAFMVEASTGTILLAKNADQQISPAS 61 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKL 110 L KLMT V+F +K + L T +S+NA S S + + + ++ Sbjct: 62 LAKLMTLDVIFDAIKRGEISLDTEYPVSENAWRTGGAPSRTSTMFAVLKSRVRVGDLIQG 121 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----GHYT 165 + V+ AND + +AE + +EK+F + M ++ +G+ F N+ G+ G Sbjct: 122 IAVQQANDSCIVLAEGISISEKEFARRMTARAREIGMPRAVFTNSTGLPDANDQNGGGKV 181 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 + R++ L+ ++ ++P + Y N N + +G DG+ GF G Sbjct: 182 SVRELVTLAQDLQQNYPDFYKYLAQPDFTWNKIFQRNRNPLLPLNIGVDGLGLGFADGEG 241 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 ++IVAS + + L + G R + S +L G N ++ Sbjct: 242 YSIVASIERDGRRLFLALGGLKTDKERTEESRRVLEWGLSNFKSQR 287 >gi|291087166|ref|ZP_06345583.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] gi|291075839|gb|EFE13203.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1] Length = 464 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 112/264 (42%), Gaps = 24/264 (9%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 + K L D V+ E D PAS+TKLMTA +V L+ Sbjct: 72 AGQTAVPQIKSDAAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLS 126 Query: 78 TPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S++A E K G T++ L L++KSAN+IA +AE + + F Sbjct: 127 DTVTFSQSAVTNLESGAVTLGVKAGDQFTVEQCLYGLLLKSANEIANGLAEHVSGSVSSF 186 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN + +LG + THF+N +G+ HYTTARDMA+++ + P + Sbjct: 187 ADLMNQKAASLGCTGTHFVNPNGLNDPNHYTTARDMALIAEAAF-ENPTLCRIASTVNYD 245 Query: 195 IK-------------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 G K N N + G G KTG+T +G +V + LIA Sbjct: 246 FPATASVPSVRKLTMGHKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIA 305 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 VIL R T + +LL GF Sbjct: 306 VIL--KSRQTHYADTKALLDYGFS 327 >gi|255658320|ref|ZP_05403729.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] gi|260849639|gb|EEX69646.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM 20544] Length = 288 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 15/258 (5%) Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 ++ A ++D TG V+ E D PAS+TK+MT + K+ Sbjct: 25 AMAAAPDITADAAIVIDEATGQVLYEKNADKREYPASMTKMMTCILALE-----KSSPDQ 79 Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 +T+S NA++ + G T+ + + L+ +++ S N A A+ E++ E F M Sbjct: 80 LVTVSANAADVECTR--LYPGYTLRMADILQQMMMISDNGAATAVGEAVGGDEASFAAMM 137 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195 N ++ +G + THF+N +G+ HY+TARDM ++ + K I Sbjct: 138 NAKAQEIGATHTHFVNMNGMPDADHYSTARDMGKIA-AYAMHNDAFRRIVGTKAKNIYYI 196 Query: 196 ----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 NTN + T+ G G+KTG+T A+ + A+A + + LIAV++ + D T Sbjct: 197 VPQGHTTYCINTNELLDTYEGCTGIKTGWTSAARGCLSAAAKRDGKELIAVVMHSDDDET 256 Query: 252 RNKVSASLLSMGFYNKTD 269 R +A+LL GF + + Sbjct: 257 RFSEAAALLDYGFEQEAE 274 >gi|222529271|ref|YP_002573153.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] gi|222456118|gb|ACM60380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor bescii DSM 6725] Length = 372 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 31/338 (9%) Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNP 53 M+ + V+I +++ F + A K ++ TG ++ E D Sbjct: 1 MKARVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPM 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS TK+MTA +V K I I A P S+ +KG + + + L L++ Sbjct: 61 ASTTKIMTAILVLENCDVNK-----EIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 115 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 S ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D+A L Sbjct: 116 SSGNDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKL 175 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFN 227 + P + + K +E+ P N N + + GADG+KTGFT +G Sbjct: 176 T-AYAMRNPIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRC 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---------KINYIIK 278 +V S + D +I V+L A D + +L+ + N K K+ Sbjct: 235 LVTSVCRDDFRVICVVLNAPDM---WNDTQKILNYCYNNFKVVKLLPDEMGYVKVKNGKS 291 Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 D+ + + + + E C + ++I + K+K Sbjct: 292 DWVKVGTTYKCYWVVESSCLPKLDVILQVAEAPIEKNK 329 >gi|289436027|ref|YP_003465899.1| hypothetical protein lse_2666 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172271|emb|CBH28817.1| unnamed protein product [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 445 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 79/357 (22%), Positives = 143/357 (40%), Gaps = 37/357 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A T ++ +TG ++ D AS+TK+M Y++ Sbjct: 17 LAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 77 LEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN ++ L L F+NA G+ + TAR Sbjct: 137 AISEKIAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P+ + E + N NW + + G DG+KTG Sbjct: 197 GMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNK--TDRK 271 T +G + A+A+Q +I V+L A + R + +L F N + + Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQ 316 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K +KD + + V K+ + + K + + + TL Sbjct: 317 KAGAKVKDPSTIAVDK---GKEDTVGLVTKDEVKLVVPKNGNEPKLTTKVTLKDKTL 370 >gi|255022591|ref|ZP_05294577.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein [Listeria monocytogenes FSL J1-208] Length = 433 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 142/356 (39%), Gaps = 35/356 (9%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKI 273 T +G + A+A+Q +I V+L A + R + +L F N ++ Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCT-TQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K + + EV E+ K+ + + K + + E+ T+ Sbjct: 305 KAGSK--VKDPSTIEVDKGKEDTVGLVTKDAVKLVVPKNDNSPKLNTNVTLEEKTI 358 >gi|217966043|ref|YP_002351721.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein5) (PBP-5) [Listeria monocytogenes HCC23] gi|217335313|gb|ACK41107.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase) (DD-carboxypeptidase) (CPase) (Penicillin-binding protein5) (PBP-5) [Listeria monocytogenes HCC23] Length = 445 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 42/364 (11%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 ILIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN ++ L L F+N+ G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L A + R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNN 309 Query: 267 K--TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 + +K +K+ + + V K+ + + K + + E Sbjct: 310 FKVKEVQKAGSKVKNPSTIAVDK---GKEDTVGLVTKDAVKLVVPKNDNSPKLNTNVKLE 366 Query: 325 KITL 328 + T+ Sbjct: 367 EKTI 370 >gi|212638873|ref|YP_002315393.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] gi|212560353|gb|ACJ33408.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus WK1] Length = 345 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 131/330 (39%), Gaps = 33/330 (10%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L++ TG V+ E AS+TK+MTA + +T+S+ Sbjct: 2 SVSAKSAILMEQTTGRVLFEKDAHTKRRIASITKIMTAILAIES-----GKWEELVTVSE 56 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A S+ K G + L + + L+++S ND AVAIAE + + + FV MN + Sbjct: 57 RAVRTEGSSIYLKPGEKIALKHLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNKKAAE 116 Query: 145 LGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---- 199 +G++ T F N HG+ HY+TA DMA+L R Q+ K Sbjct: 117 IGMTNTEFANPHGLDDAENHYSTAYDMALL-MRYAMQNEQFREVSGTKLYRAPNPTEDWD 175 Query: 200 --YPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + N N + + G KTG+T + +V +A + LIAV + A D Sbjct: 176 RIWRNKNKLLTHLYKYCTGGKTGYTKRAKRTLVTTASKDGLDLIAVTIDAGDD---WNDH 232 Query: 257 ASLLSMGFYNKTDR-----KKINYIIKDFYQQNLSN------EVPNISEEVCTTQKEIIN 305 ++ GF + + + I FY + L V E + +++++ Sbjct: 233 MAMYEHGFAHYELVTVKADEIVEQIQDPFYDKRLFVVRDFIYPVTKKEEALIRLERKLLR 292 Query: 306 YNTQMKEAK-----DKESHFIDFEKITLLK 330 Q KE K +I EK+ Sbjct: 293 PQEQWKETGVPSIVGKAELYIGNEKVDETP 322 >gi|148380930|ref|YP_001255471.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 3502] gi|153933353|ref|YP_001385299.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936108|ref|YP_001388707.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|148290414|emb|CAL84541.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str. ATCC 3502] gi|152929397|gb|ABS34897.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932022|gb|ABS37521.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A str. Hall] Length = 415 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 56/385 (14%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNILPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------------ 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFTLDLLYPKDSYVT 293 Query: 269 -----DRKKINYIIKDFYQQNLSNE--VPNISEEVCTT-----QKEIINYNTQMKEAKDK 316 + K Y KDFY ++ P++ E +K + + + + Sbjct: 294 TYTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVVLSANLSRGSNS 353 Query: 317 ESHF-----IDFEKITLLKNKITKK 336 +D E + L N + K Sbjct: 354 VGSLTLKSGVDHESVNLFTNNVISK 378 >gi|152977572|ref|YP_001377089.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026324|gb|ABS24094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 425 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 142/326 (43%), Gaps = 34/326 (10%) Query: 21 SIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 S AE N + L D +TG V+ E PD AS++KLM Y V +K K Sbjct: 23 SHAEENIHIEAAAAILFDADTGKVLHEQNPDELLAVASMSKLMVVYAVLEAIKAGKITWN 82 Query: 78 TPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 T + IS A E SN F+KG T+ +++ SAN ++A+AE L +EK Sbjct: 83 TKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKN 142 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKT 179 F++ + +K LGL F+NA G+ + +ARDM IL+ + T Sbjct: 143 FLKLADEYAKKLGLKKYKFVNATGLNNADLKGKHPEGTDPNGENSLSARDMGILAKTLIT 202 Query: 180 DFPQYMHYFQIKGLEI-----KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVA 230 +P+ + + + K + N NW + + G DG+KTG + +G+ Sbjct: 203 KYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTI 262 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLS 286 +A +GD LI+VI+ + R S L+ GF N +K N I +++ Sbjct: 263 TAKRGDLRLISVIIKTKSMDERFTESRELIDYGFRNFEKKKLTLDKNNTISVVKGKEDAV 322 Query: 287 NEVPNISEEVCTTQKEIINYNTQMKE 312 + P EV T + Y T + Sbjct: 323 SIAPEKEIEVVTKKGSKPPYKTSTEA 348 >gi|304407580|ref|ZP_07389232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] gi|304343531|gb|EFM09373.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus curdlanolyticus YK9] Length = 326 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 23/261 (8%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D NTG I + PAS++KLMT VV ++ K +T+S A Sbjct: 38 EAKSAILIDANTGQTIFAQGANKALPPASMSKLMTELVVLETVRAGKLGWKDQVTVSPYA 97 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + + + + G T+ + + V SAND AVA+AE + +E++FV+ MN +K +G Sbjct: 98 ANVLGAGAGLRNGERHTVKELFESMAVHSANDSAVALAEWIGGSEREFVKLMNEKAKAIG 157 Query: 147 LSA-THFMNAHGV-------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 LS T F NA G+ TARD+A+L+ + +P+ + + Sbjct: 158 LSDSTVFANATGLSSSDLAMYAQSAAADGETVMTARDVALLARYMIRSYPEVLTITSREA 217 Query: 193 LEIK-----GKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + + TN + + G+DG+KTG+T +G+ + +G LIAV+ Sbjct: 218 VGLNPGASDDAALRTTNLMLPGERFAYPGSDGLKTGYTERAGYCFTGTTSRGGTRLIAVV 277 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +GA + R + L +GF Sbjct: 278 MGAESADGRFIETERLYDLGF 298 >gi|311028943|ref|ZP_07707033.1| D-alanyl-D-alanine carboxypeptidase dacA [Bacillus sp. m3-13] Length = 459 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 51/319 (15%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSI-AETNK-----LPYYTLLDTNTGHVIAENYPDH 49 M++ F+ ++ + ++ +IFP S AE N L++ +TG +I + D Sbjct: 1 MKRSFKQLFVGLLVLTLMVSIFPGKSAQAEENDFLNINAKAAILIEFSTGKIIYQKNVDE 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTL 104 AS+TK+MT Y++ +++ K + + +S A SN +K T+ Sbjct: 61 ALPVASMTKMMTEYLLLEAIEDGKLDWSKEVILSDYAQAISQKYPELSNVPMRKQEPYTI 120 Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-- 162 + + + SAN +A+AE++ +E KFV+ MN ++ +GL +F+N+ G+ Sbjct: 121 KELYEAMAIYSANGATIALAEAIAGSETKFVEMMNAKAEEIGLENYNFVNSTGLNNEDLA 180 Query: 163 ----------------HYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYP 201 +A+D A L+ R+ TD+P+ + I + P Sbjct: 181 VGGVPMHPEGTDANEETTLSAKDTARLAHRLLTDYPEILDTASIPFKVFREGTPDAIDMP 240 Query: 202 NTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----- 250 N N + T F G DG+KTG T A+GFN +A + +I+V++ + Sbjct: 241 NWNKMLFTEELKVQFEGIDGLKTGSTDAAGFNFTGTAERDGMRVISVVMNTTNDEGVSTE 300 Query: 251 -TRNKVSASLLSMGFYNKT 268 +R + L++ F + + Sbjct: 301 ISRFIETKKLMTHAFGSYS 319 >gi|170760236|ref|YP_001788291.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407225|gb|ACA55636.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 415 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 27/288 (9%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ + H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSREKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKDNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFT 281 >gi|255528214|ref|ZP_05395035.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] gi|255508087|gb|EET84506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium carboxidivorans P7] Length = 411 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 123/286 (43%), Gaps = 24/286 (8%) Query: 1 MRQFLVIIA--MAMLSNI---FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ L+ + + +LS++ + T L+D TG+V+ D + PAS Sbjct: 1 MKKLLIFMMSFVFLLSSVSLKAQAKADPPTVSADSVVLMDAITGYVLYGKNEDSAYPPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TKLMTA + K L +T+ KN S +G + + + L L+++S Sbjct: 61 TTKLMTALLTLE-----KCKLDDVVTVGKNPPLVDGSKIYLFEGEQLKVRDLLYGLMLQS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A A+AE + + F MN + LG +HF+N G+ H T+ARD+A++ Sbjct: 116 GNDCAEALAEHVGGSIDNFAVLMNKRALELGCRDSHFVNPSGLYDEKHKTSARDLALIMR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAVGT-----FLGADGMKTGFTCA 223 + P+Y EI + N N + + G G KTG+T Sbjct: 176 ELSNK-PEYTQIASTSFYEIPPTNKSAVKRPLWNENKLIQKSSQLYYDGCKGGKTGYTTQ 234 Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 S + V+ + + Q LI ++ D+ T + +L + GF Sbjct: 235 SLHSYVSYSTRNGQRLIVALVHDKDK-TFFPDAVNLFNYGFSTFES 279 >gi|313635871|gb|EFS01844.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL S4-171] Length = 445 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 35/356 (9%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A T ++ +TG ++ D AS+TK+M Y++ Sbjct: 17 LAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 77 LEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+F MN ++ L L F+NA G+ + TAR Sbjct: 137 AISEKIAGSEKEFXAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P+ + E + N NW + + G DG+KTG Sbjct: 197 GMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKI 273 T +G + A+A+Q +I V+L A + R + +L F N ++ Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQ 316 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCT-TQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K + + EV E+ K+ + + K + + + TL Sbjct: 317 KAGAK--VKDPSTIEVDKGKEDTVGLVTKDEVKLVVPKNGNEPKLTTKVTLKDKTL 370 >gi|254228127|ref|ZP_04921557.1| beta-lactamase [Vibrio sp. Ex25] gi|151939623|gb|EDN58451.1| beta-lactamase [Vibrio sp. Ex25] Length = 249 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 5/234 (2%) Query: 7 IIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 A++ L+ P + A Y L+D +TG V+ E NPASLTKLMTAYV Sbjct: 16 FAAVSSLAYAAPTVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVA 75 Query: 66 FSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + L + IS+NA S + ++++L + + L+V+S ND +VA Sbjct: 76 GQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVA 135 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 IAE + +E FV MN+ + L L+ T F N HG+ G Y+T D+A L I D P Sbjct: 136 IAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLP 195 Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQG 235 + G N N + + DGMKTG+T +G+++ SA QG Sbjct: 196 DIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQG 249 >gi|255020045|ref|ZP_05292118.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] gi|254970574|gb|EET28063.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC 51756] Length = 381 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 10/270 (3%) Query: 6 VIIAMAMLSNIFPFLSIAETNK----------LPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +I+A + + + T + Y L+D TG ++A P PAS Sbjct: 5 LILATGLAAKALAGTPTSATPALVPPPPALPGVKSYVLMDFRTGAILAAKNPQLQLPPAS 64 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTKLMTAY+ + L + + I +S A S+ + +T+D + LI+ S Sbjct: 65 LTKLMTAYLSYEALADGRLRWHERIPVSTVAWHTGGSSMFIQPNLPVTVDQLMHGLIIDS 124 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND AVA+A+++ + FV MN T+ LGL+ H+ + G+ G + +A ++A LS Sbjct: 125 GNDAAVALAQAVAGSRAAFVDEMNATAAQLGLTGAHYTDVDGLPHPGLHLSAMNIAELSR 184 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 + +PQ + +I+ + N A+ DG+KTG T A+G + + + Sbjct: 185 DLIARYPQVLQISRIQYYRYNHITQRSWNPALFGHPHVDGLKTGHTQAAGHCMDTTIDRH 244 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + LIAV++GA SL + Sbjct: 245 GRRLIAVVMGAQSWPAGVHDVMSLFDYAYR 274 >gi|194098190|ref|YP_002001238.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945] gi|291044211|ref|ZP_06569920.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2] gi|193933480|gb|ACF29304.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945] gi|291011105|gb|EFE03101.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2] gi|317163912|gb|ADV07453.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 441 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 17/336 (5%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 82 PTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSG 141 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I AND A+ +A+ L + Sbjct: 142 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSI 201 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 202 ENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 261 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 262 SFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 321 Query: 252 RNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R ++ LL+ K + I + + KE Sbjct: 322 RASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKM 381 Query: 306 YNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 ++ + K+ + KI + I +K Sbjct: 382 AEQILETIQPIPAPVKKGQILGKIKIRQNGHTIAEK 417 >gi|295091424|emb|CBK77531.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf. saccharolyticum K10] Length = 474 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 78/264 (29%), Positives = 112/264 (42%), Gaps = 24/264 (9%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 + K L D V+ E D PAS+TKLMTA +V L+ Sbjct: 82 AGQTAVPQIKSDAAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLS 136 Query: 78 TPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T S++A E K G T++ L L++KSAN+IA +AE + + F Sbjct: 137 DTVTFSQSAVTNLESGAVTLGVKAGDQFTIEQCLYGLLLKSANEIANGLAEHVSGSVSSF 196 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN + +LG + THF+N +G+ HYTTARDMA+++ + P + Sbjct: 197 ADLMNQKAASLGCTGTHFVNPNGLNDPNHYTTARDMALIAEAAF-ENPTLCRIASTVNYD 255 Query: 195 IK-------------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 G K N N + G G KTG+T +G +V + LIA Sbjct: 256 FPATASVPSVRKLTMGHKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIA 315 Query: 242 VILGALDRNTRNKVSASLLSMGFY 265 VIL R T + +LL GF Sbjct: 316 VIL--KSRQTHYADTKALLDYGFS 337 >gi|291520325|emb|CBK75546.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens 16/4] Length = 463 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 146/352 (41%), Gaps = 44/352 (12%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYY-----------TLLDTNTGHVIAENYPD 48 +++F+ ++A +L N + + Y+ +++ TG ++ D Sbjct: 3 LKRFISKLLAFVLLINGLFLFNYRDVKAADYWPSGVDVTAESAIIMEQETGTILYSKNID 62 Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLD 105 PAS+TK+MTA +V K L + S A +E S+ MT++ Sbjct: 63 EVHYPASITKIMTALIVLE-----KCKLDETVKFSAEAVYGTELGSSSIARDVNEEMTVE 117 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 L ++++SAN+ A A+ E + FV+ MN +K LG + THF N +G+ HYT Sbjct: 118 QTLYGMMLESANECAYALGEHVAGDIPSFVKMMNEKAKELGCTNTHFNNTNGLPDEEHYT 177 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNWAVGT-------FL 211 TA DMA++S P++ K I N + + + Sbjct: 178 TAHDMALISRAAF-AIPKFAEIVGTKNYTIPPTNKHADPTPLNNHHQMLHYYKSNKYIYD 236 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 G KTG+T +G +V A + +LI V++ + S +L F N + Sbjct: 237 YCLGGKTGYTAVAGATLVTYAKKDGMTLICVVMK-DTVGEQYPDSTNLFEYCFDNFST-- 293 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323 Y + DF ++S E NI+ + + ++I + + K + +D Sbjct: 294 ---YSVADFA--SISEEDTNITG-ILSENSDLIKIDKKGMIVIPKTASVLDV 339 >gi|266618868|ref|ZP_06111806.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] gi|263528518|gb|EEZ28341.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf] Length = 415 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 56/385 (14%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ + H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------------ 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFTLDLLYPKDSYVT 293 Query: 269 -----DRKKINYIIKDFYQQNLSNE--VPNISEEVCTT-----QKEIINYNTQMKEAKDK 316 + K Y KDFY ++ P++ E +K + + + + Sbjct: 294 TYTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVVLSANLSRGSNS 353 Query: 317 ESHF-----IDFEKITLLKNKITKK 336 +D E + + N + K Sbjct: 354 VGSLTLKSGVDHESVNIFTNNVISK 378 >gi|153938417|ref|YP_001392255.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|152934313|gb|ABS39811.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum F str. Langeland] Length = 415 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 156/385 (40%), Gaps = 56/385 (14%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F ++ A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVAWAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------------ 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKDNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFTLDLLYPKDSYVT 293 Query: 269 -----DRKKINYIIKDFYQQNLSNE--VPNISEEVCTT-----QKEIINYNTQMKEAKDK 316 + K Y KDFY ++ P++ E +K + + + + Sbjct: 294 TYTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVVLSANLSRGSNS 353 Query: 317 ESHF-----IDFEKITLLKNKITKK 336 +D E + L N + K Sbjct: 354 VGSLTLKSGVDHESVNLFTNNVISK 378 >gi|293399410|ref|ZP_06643563.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Neisseria gonorrhoeae F62] gi|291609979|gb|EFF39101.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein 5/6) [Neisseria gonorrhoeae F62] Length = 441 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 17/336 (5%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 82 PTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSG 141 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I AND A+ +A+ L + Sbjct: 142 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSI 201 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 202 ENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 261 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 262 SFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESTET 321 Query: 252 RNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R ++ LL+ K + I + + KE Sbjct: 322 RASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKM 381 Query: 306 YNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 ++ + K+ + KI + I +K Sbjct: 382 AEQILETIQPIPAPVKKGQILGKIKIRQNGHTIAEK 417 >gi|228996680|ref|ZP_04156317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228762999|gb|EEM11909.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 361 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 135/321 (42%), Gaps = 15/321 (4%) Query: 12 MLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 M +++ P + A+ N + L++ ++G V+ AS+TK+MTA + Sbjct: 1 MCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTALLAAES- 59 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + + IS A S + G + L++ + L+++S ND A AIAE++ Sbjct: 60 ----GKMKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVGG 115 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYF 188 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + F Sbjct: 116 SIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-RYAMGNETFRKIF 174 Query: 189 QIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245 K + K YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 GTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLN 234 Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 A + L GF K + Q+ I + + Sbjct: 235 ASND---WDDHMYLFDQGFKQYELTKVLRQGALSGLQEKKYTNHVYIKNDFAIPLTKDEK 291 Query: 306 YNTQMKEAKDKESHFIDFEKI 326 +K D+ + +D EK+ Sbjct: 292 KQVMLKVELDRSAKLVDGEKV 312 >gi|213582478|ref|ZP_03364304.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 242 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52 +++ L I A ++ P L+ + P + L+D TG V+ N Sbjct: 3 LKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 62 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106 PASLTKLMT YVV + + +T+ ++A S K+G +++ + Sbjct: 63 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 122 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166 + LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++ Sbjct: 123 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 182 Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASG 225 A D+A+LS I P++ H + K L G N N + + DG+KTG T +G Sbjct: 183 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242 >gi|218682277|ref|ZP_03529878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894] Length = 408 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 5/252 (1%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 K +++ TG V+ D ++PASL KLMT +VF + + + L T +S+ Sbjct: 41 ATKAEQAYMIEAATGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSE 100 Query: 85 NASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139 A + S + +++ +K + ++ AND + +AE + TE++F + M Sbjct: 101 YAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGTEQQFAESMT 160 Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199 ++ LG+ F N+ G+ TAR+M L+ ++ +P YF E Sbjct: 161 RRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQQSYPNLYPYFAQPDFEWNKIF 220 Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 N N +G LGADG+ TGFT G++IVAS + + L + G R + + + Sbjct: 221 QRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFLALAGIASDKERTEEAKRV 280 Query: 260 LSMGFYNKTDRK 271 L G R+ Sbjct: 281 LEWGLTAFESRQ 292 >gi|229190080|ref|ZP_04317086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 10876] gi|228593409|gb|EEK51222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC 10876] Length = 317 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 + +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 113 WEDSVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G ++ R + L+S F Sbjct: 293 MGTSNKTKRFTETNKLMSYAF 313 >gi|229160966|ref|ZP_04288955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803] gi|228622534|gb|EEK79371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803] Length = 317 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 12/260 (4%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 P I ++D + G VI +N + + PAS++K+MTAY++ + K Sbjct: 54 VPPKYIPPEINAKAAIVIDASDGDVIYQNNENEAFAPASMSKMMTAYLLLESVHNGKVRW 113 Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ Sbjct: 114 EDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQ 173 Query: 137 HMNNTSKNLGLSA-THFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 174 LMNAKAKQLEMSEYAKFANASGLQEPDGSETKMTAADVAKLAYNLIKDYPEILEVTHLRQ 233 Query: 193 LEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 ++ + N N G DG+KTGFT ++G+ +A QGD +I V++ Sbjct: 234 SQLAFNNTTVTNTNEMLNENNKSLHIEGMDGLKTGFTDSAGYCFTGTAKQGDTRIITVVM 293 Query: 245 GALDRNTRNKVSASLLSMGF 264 G + R + L++ GF Sbjct: 294 GTSGKAKRFTETNKLMTYGF 313 >gi|322807302|emb|CBZ04876.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402 065] Length = 415 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 130/288 (45%), Gaps = 27/288 (9%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSVLLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFT 281 >gi|16804791|ref|NP_466276.1| hypothetical protein lmo2754 [Listeria monocytogenes EGD-e] gi|224502838|ref|ZP_03671145.1| hypothetical protein LmonFR_09994 [Listeria monocytogenes FSL R2-561] gi|16412254|emb|CAD00967.1| lmo2754 [Listeria monocytogenes EGD-e] Length = 445 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 75/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 L++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 ILIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + K +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|114704618|ref|ZP_01437526.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Fulvimarina pelagi HTCC2506] gi|114539403|gb|EAU42523.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Fulvimarina pelagi HTCC2506] Length = 396 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 14/291 (4%) Query: 2 RQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 R L A+ L++ + + P L++ TG VI + P+ PA Sbjct: 5 RPLLAAFAILSLTSHVTQAQEGAAANAYGLQTEAPRALLVEDRTGTVILDKNASEPFAPA 64 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALK 109 SL KLMT +VF LK + ++T ++++A + S + + + ++ Sbjct: 65 SLAKLMTMEIVFEALKAGEISMSTEYAVTEHAWRTGGAPSGAATMFAAINSRIPVADLIR 124 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTA 167 I++ AND A+ +AE + +E++F + MN ++ LGL T + N G+ TTA Sbjct: 125 GTIIQGANDGAIILAEGMFGSEEEFTERMNARAEELGLDDTRYANPTGLPTEEGEQQTTA 184 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 RD+ L+ ++++ P+ + E N N + LG +G+ TG+T ASG++ Sbjct: 185 RDLVTLTRHLRSEHPELYKIYAEPAFEWNKIFQRNRNPVLREELGGEGVGTGYTEASGYS 244 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 ++ +A +G ++ + + G R + LL GF + + K Sbjct: 245 LMGAASKGGRTFLVALSGLESSAAREAEAQRLLEFGFDRLIEADVLEAGAK 295 >gi|218463771|ref|ZP_03503862.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5] Length = 385 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 5/251 (1%) Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 K +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ Sbjct: 19 TKAAQAYMIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDTEYPVSEY 78 Query: 86 ASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A + S + +++ +K + ++ AND + +AE + +E++F + M Sbjct: 79 AWRTGGAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESMTR 138 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200 ++ +G+ F N+ G+ TAR+M L+ ++ +P YF + E Sbjct: 139 RAREIGMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQ 198 Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260 N N +G LGADG+ TGFT G++IVAS + + L + G R + + +L Sbjct: 199 RNRNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVL 258 Query: 261 SMGFYNKTDRK 271 G +R+ Sbjct: 259 EWGLTAFENRQ 269 >gi|290891934|ref|ZP_06554931.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-071] gi|290558528|gb|EFD92045.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-071] Length = 433 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 142/357 (39%), Gaps = 37/357 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNK--TDRK 271 T +G + A+A+Q +I V+L A + R + +L F N + + Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K +K+ + + V K+ + + K + + E+ T+ Sbjct: 305 KAGSKVKNPSTIAVDK---GKEDTVGLVTKDAVKLVVSKNDNSPKLNTNVKLEEKTI 358 >gi|254824881|ref|ZP_05229882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-194] gi|293594121|gb|EFG01882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-194] Length = 445 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|254851941|ref|ZP_05241289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL R2-503] gi|254994152|ref|ZP_05276342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J2-064] gi|255520022|ref|ZP_05387259.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL J1-175] gi|300763487|ref|ZP_07073485.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] gi|258605239|gb|EEW17847.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL R2-503] gi|300515764|gb|EFK42813.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N1-017] Length = 445 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|307572345|emb|CAR85524.1| dacA [Listeria monocytogenes L99] Length = 433 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 142/357 (39%), Gaps = 37/357 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNK--TDRK 271 T +G + A+A+Q +I V+L A + R + +L F N + + Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K +K+ + + V K+ + + K + + E+ T+ Sbjct: 305 KAGSKVKNPSTIAVDK---GKEDTVGLVTKDAVKLVVPKNDNSPKLNTNVKLEEKTI 358 >gi|152974993|ref|YP_001374510.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023745|gb|ABS21515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH 391-98] Length = 373 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 21/348 (6%) Query: 1 MRQFLVIIAMAMLSN-IFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ VI+A+ ++ P + A+ N + L++ ++G V+ P AS+T Sbjct: 1 MKRAWVIVALLIMCMHTMPNSTYAQMNNVSAHNAVLMEEHSGRVLYGKREHEPQKIASIT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA + + ++IS A S K G + L++ + L+++S N Sbjct: 61 KIMTALLAAES-----GKMKEMVSISNKAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWR 176 D A AIAE + + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + Sbjct: 116 DAAQAIAEKVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGTHYSSAYDMALLT-K 174 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAI 233 + F K + + YP N + A G KTGFT +G +V +A Sbjct: 175 YAMGNETFRKIFGTKTYQSESWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV--- 289 + I V L A L GF K + + ++ ++ V Sbjct: 235 KNGLDFIVVTLKASSD---WDDHMYLFDQGFKRYKLTKVLAQGAFPELKEKKYAHHVYTK 291 Query: 290 PNISEEVCTTQKEIINYNTQ-MKEAKDKESHFIDFEKITLLKNKITKK 336 + + + +K + + K A K+ + + I + K+ ++ Sbjct: 292 NGFAVPLASDEKNKVLLRVELDKRANLKDGNKVGKIVIYVGNEKVGER 339 >gi|188586265|ref|YP_001917810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350952|gb|ACB85222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 387 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 32/310 (10%) Query: 5 LVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 L+++A + L+N P + E L+D TG V+ E AS Sbjct: 20 LLVLANSNLTNALPEEDLYELKEIEELEEEITATSACLVDVKTGRVLYEQNSHKQLPMAS 79 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + + L +T S+ ASE S+ ++ +TL+ L L+++S Sbjct: 80 TTKVMTALLSLE-----RGNLNEVVTASEAASEVEGSSIYLQEDEQLTLEAMLYGLMLES 134 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A AIAE + + F ++M + +++LG T+F N HG+ HY+TA DM I++ Sbjct: 135 GNDAAHAIAEHIDGDIESFARNMTDRAESLGAKNTNFQNPHGLPSDNHYSTAYDMTIIAK 194 Query: 176 RIKTDFPQYMHYFQIKGL-------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ K + + N N + ADG+KTG+T A+G + Sbjct: 195 EALKKS-KFAEIVSTKEKLIPWEKGDADWRYLNNDNKLLDELSEADGVKTGWTEAAGRCL 253 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 + S + ++ ++ +L A + + +LL G Y +++ I + L E Sbjct: 254 IFSGTKDERQVVGTVLKAPKM---YQDAENLLEYGIYQFNEKQVI-------QKGQLVRE 303 Query: 289 VPNISEEVCT 298 VP + T Sbjct: 304 VPVEKGKYST 313 >gi|16801957|ref|NP_472225.1| hypothetical protein lin2897 [Listeria innocua Clip11262] gi|16415432|emb|CAC98123.1| lin2897 [Listeria innocua Clip11262] Length = 445 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 146/365 (40%), Gaps = 44/365 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G ++ + + + Sbjct: 70 MMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN ++ L L F+N+ G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGGPTD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q ++ V+L A + R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYAFNN 309 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN---ISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323 K+ + K + + + + + V K+ + + + K S + Sbjct: 310 F----KVKEVQKAGSKVKIPSTIAVDKGKEDTVGLITKDAVKLVVPKNDNEPKLSTKVKL 365 Query: 324 EKITL 328 ++ TL Sbjct: 366 KEKTL 370 >gi|226225306|ref|YP_002759413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Listeria monocytogenes Clip81459] gi|225877768|emb|CAS06483.1| Putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328468231|gb|EGF39237.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816] Length = 445 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|46908941|ref|YP_015330.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] gi|254930973|ref|ZP_05264332.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes HPB2262] gi|46882214|gb|AAT05507.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes serotype 4b str. F2365] gi|293582519|gb|EFF94551.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes HPB2262] gi|328469102|gb|EGF40050.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220] gi|332313185|gb|EGJ26280.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. Scott A] Length = 445 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + + +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|228907701|ref|ZP_04071557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228851934|gb|EEM96732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 309 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 45 AVPPKYIPPKIDAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+++ L+++SAN+ AVA+AE + KTEK FV Sbjct: 105 WEDPVKMSVKAAQTEGARIPVQVNDTLTVNDLYHALMIESANNSAVALAEHMAKTEKDFV 164 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q MN +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 165 QLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305 >gi|77464119|ref|YP_353623.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter sphaeroides 2.4.1] gi|77388537|gb|ABA79722.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter sphaeroides 2.4.1] Length = 355 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 8/247 (3%) Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95 T V+ + P PAS++KLMT ++F L++ + + T +S A + S Sbjct: 1 MTTHTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMF 60 Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 ++ T++ + +IV S ND V +AE L TE F + M +K LG++ + F N+ Sbjct: 61 VEERDRPTVEELIHGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNS 120 Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAV----G 208 G GH + D+ IL+ R+ +FP++ YF K + N N + Sbjct: 121 SGWPDPGHRMSVHDLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPN 180 Query: 209 TFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 ADG+KTG T +G+ +V SA + + ++ V+ G R + +++ F Sbjct: 181 GDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQF 240 Query: 268 TDRKKIN 274 + + Sbjct: 241 VQKTLVT 247 >gi|38142311|dbj|BAD00958.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142319|dbj|BAD00962.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|332202728|gb|EGJ16797.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA41317] Length = 413 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TAY+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKKDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|15965358|ref|NP_385711.1| putative penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein [Sinorhizobium meliloti 1021] gi|307312733|ref|ZP_07592364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] gi|307317217|ref|ZP_07596658.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|15074538|emb|CAC46184.1| Putative penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein [Sinorhizobium meliloti 1021] gi|306897305|gb|EFN28050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti AK83] gi|306899458|gb|EFN30090.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti BL225C] Length = 384 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 114/277 (41%), Gaps = 6/277 (2%) Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M+ V+ A++S + A K L+D TG V+ D P PASL KL Sbjct: 3 MKWLAVVGFLAAVVSGQAVAQTPAFDTKAKQIYLVDAETGTVLFSRDEDAPVPPASLAKL 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114 M VVF L + + T +S++A S S + + + ++ V+ Sbjct: 63 MAMEVVFEALDKGELTPETSFEVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATVQ 122 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND + +AE + +E F + M +++LGL F NA G+ + T R++ L+ Sbjct: 123 LANDACIVLAEGMAGSEAAFAELMTKRARDLGLPVATFKNATGLPHPENKVTMRELVALT 182 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + P Y + E N N + +G DG+ TGF GF++ S + Sbjct: 183 RHLYEAHPDYYRLYSQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAVSMQR 242 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 GD+ + + G R + S +L R+ Sbjct: 243 GDRRVYLAMGGLESEKERIEESRRVLDWAMTAFEKRR 279 >gi|332654087|ref|ZP_08419831.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] gi|332517173|gb|EGJ46778.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium D16] Length = 453 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 32/299 (10%) Query: 1 MRQF----LVIIAMAMLSNIFPFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNP 53 M+++ LV++ M + + PF S+A L+D N V+ E P Sbjct: 1 MKKYRLFALVLVVSIMTTLLLPFQSLALEPPEFHGKNAILVDANYDEVLYEVGGHDKVYP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLL 111 AS+TK+MTA + ++ K T +T S A+ P S + K G +T++ L L Sbjct: 61 ASITKVMTALLTLEAIESGKLTAQTQVTASATAATIPEGSSTANIKAGEVLTVEQLLYCL 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAN+ A +AE++ FV MN+ +K LG THF N HG HYTT D+ Sbjct: 121 LLPSANEAAQILAETVGGDIDTFVGMMNDKAKELGCENTHFANPHGFHDPDHYTTPYDI- 179 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAV--GTFLGA-----DGMKT 218 L + ++ + I + NTN T+ G G KT Sbjct: 180 TLFMKAAMEYDLFQKIVTSPNYTIPATNLSEQRTVRNTNALTSNWTYTGYLYTPGTGGKT 239 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT---------RNKVSASLLSMGFYNKT 268 G T +G +V +A +GD LI+V++G ++ T + + LL+ GF N Sbjct: 240 GSTDEAGKCLVETAKKGDTYLISVVMGEPEKVTLADGTEVVAQFYDTIQLLNWGFENFQ 298 >gi|225163790|ref|ZP_03726088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium TAV2] gi|224801583|gb|EEG19881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium TAV2] Length = 310 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 20/284 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51 MR L + + +++ A+ T Y + D TG V+ E D P Sbjct: 1 MRIILPFVLGLLAASLASPAHAAKPAAVPPPATTGAHRGYIVTDAATGRVLLEENSDAPN 60 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 PAS+TKLMT VV + ++ TP+TIS A S + T+D+ L L Sbjct: 61 PPASVTKLMTFLVVHDKITARQLSFDTPVTISLEAQRMGGSQVYLETQERFTVDDLLYAL 120 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYT 165 +V+SAND A+A+AE+ + + FV+ MN + LG++ T + HG+ Q Sbjct: 121 MVQSANDAAIALAEAAAGSREAFVELMNTRAHQLGMTHTTWRTPHGLPPNTSLGQEPDLA 180 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLGADGMKTGFT 221 + RD+A+LS + + + Y K + + N N + G DG+KTG+ Sbjct: 181 SPRDIALLSRHLLLNT-DILRYTSTKTRDFRPGPKVQAMKNHNHLLWRVNGCDGLKTGYY 239 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 +GF++ A+ + D+ +I V LG +R R+ + ASL+ GF Sbjct: 240 AKAGFSLAATVQRNDRRIIVVTLGVPERKQRDVLVASLIEKGFA 283 >gi|168205928|ref|ZP_02631933.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] gi|170662569|gb|EDT15252.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str. JGS1987] Length = 444 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEEDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSKHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|254827320|ref|ZP_05232007.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N3-165] gi|254830810|ref|ZP_05235465.1| hypothetical protein Lmon1_05599 [Listeria monocytogenes 10403S] gi|254899789|ref|ZP_05259713.1| hypothetical protein LmonJ_08246 [Listeria monocytogenes J0161] gi|254913006|ref|ZP_05263018.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818] gi|254937387|ref|ZP_05269084.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900] gi|284800360|ref|YP_003412225.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578] gi|284993545|ref|YP_003415313.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923] gi|258599701|gb|EEW13026.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL N3-165] gi|258609993|gb|EEW22601.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900] gi|284055922|gb|ADB66863.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578] gi|284059012|gb|ADB69951.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923] gi|293591008|gb|EFF99342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818] Length = 445 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 37/301 (12%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++ A +S A+ + P ++ +TG ++ D AS+TK Sbjct: 10 IVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114 +M Y++ + + K +TIS+ A + SN + G T+ + + + Sbjct: 70 MMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIY 129 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162 SAN A+AI+E + +EK+FV MN + L L F+NA G+ Sbjct: 130 SANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKD 189 Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----G 212 + TAR MA L+ + D+P + E + N NW + + G Sbjct: 190 ENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKG 249 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYN 266 DG+KTG T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 250 VDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNN 309 Query: 267 K 267 Sbjct: 310 F 310 >gi|288561558|ref|YP_003428964.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] gi|288548190|gb|ADC52072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus OF4] Length = 446 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 140/367 (38%), Gaps = 35/367 (9%) Query: 2 RQFLVIIAMAMLSNIFPF----LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 + F+ + + +++N+ +S L+D +G ++ + + AS++ Sbjct: 7 KSFIKAVLLLVITNVLITSPVSVSANPNINTNSAILVDATSGKILLQKNINELLKVASMS 66 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIV 113 K+M+ Y+V + + IS E SN ++ T T+ + + + Sbjct: 67 KMMSEYLVLEAINNGAISWEQVVPISDLVREISHNNNLSNVYLRQDETYTVKELYESVAI 126 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS----ATHFMNAHGVVQ--------- 160 SAN +A+AE + +E+ FV MN+ + L L F+N+ G+ Sbjct: 127 YSANGATMALAELIAGSEESFVNMMNDKAMQLELGEYGIDYKFVNSTGLPNQYLLGKHPE 186 Query: 161 -----HGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAV--- 207 + T R A L++ + D+P+ + I K + N NW + Sbjct: 187 GTTEKDENELTVRATAKLAFHLLKDYPEVLETASIERKIFKEGTEDFIQMDNWNWMLPGL 246 Query: 208 -GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + DG+KTG+T +G++ +A + + LI V+ R + LL GF Sbjct: 247 VYGYPDVDGLKTGYTAQAGYSFTGTAERDNVRLITVVTKTSSLEERFSETKKLLDYGFSQ 306 Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + + I + Q+ + E T + +I++ + D E++ Sbjct: 307 FSIEELIPKGYRPEGQETVGVSKGKEHEVAVFTDESLISFVRVGERDNYIPVVTFDQERL 366 Query: 327 TLLKNKI 333 I Sbjct: 367 NENGELI 373 >gi|225856538|ref|YP_002738049.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae P1031] gi|38142339|dbj|BAD00972.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225726015|gb|ACO21867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae P1031] Length = 413 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 153/363 (42%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|306820946|ref|ZP_07454566.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551060|gb|EFM39031.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 434 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 29/282 (10%) Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88 ++++ TG ++ + PAS TK+MT + L +K IT+ ++ Sbjct: 37 KSAVVIESETGKILFDKNAKQKAFPASTTKIMTGLLAIENLDLEK-----SITVPEDFQL 91 Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 S+ G T + ++ +++ SAND V +A + + FVQ MN + LG + Sbjct: 92 VDGSSMYLLPGETFKVRELIQAVLIHSANDACVLLAIEISGSVDSFVQLMNQKAAELGAT 151 Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-------EIKGKKYP 201 THF+N HG+ HYTTA DMAI++ ++ L + + Y Sbjct: 152 NTHFVNPHGLHDDNHYTTAYDMAIIAREAMK-NDEFRKIVGQSSLILPETPKTPEKRIYN 210 Query: 202 NTNWAVGT--------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247 NTN + + + DG+KTG+T G +VAS I+ D LI+V+ + Sbjct: 211 NTNRFLWSNSEIIYKNQYIPIKYDIIDGIKTGYTLEGGNCLVASGIKNDMRLISVVYNS- 269 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289 + + S +L GF N + + I + +N+ N + Sbjct: 270 NGFEMYRDSRIILDYGFDNFSVQNIITAG-EVLGSENIKNSI 310 >gi|226950403|ref|YP_002805494.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] gi|226841760|gb|ACO84426.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] Length = 415 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 27/288 (9%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWN 52 M+ ++ ++ + S F +++A+ +K L+D+ TG +I PD P+ Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK+MTA + + L +TI + S +G + + + L L+ Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE L + F + MN +K LG T+F+N G+ H T+ARD+AI Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCINTNFVNPSGLYNDKHRTSARDLAI 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGF 220 + + P+Y I + N N + + G +G KTG+ Sbjct: 176 IMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGY 234 Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 T S + VAS + + +I ++ ++N S L + GF N T Sbjct: 235 TVQSDHSYVASVNKNNHRIIVALVHDKEKN-FFDDSVKLFNYGFNNFT 281 >gi|30020090|ref|NP_831721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] gi|29895640|gb|AAP08922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579] Length = 279 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%) Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 + P I ++D + G +I + + + PAS++K+MTAY++ + K Sbjct: 15 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 74 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV Sbjct: 75 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 134 Query: 136 QHMNNTSKNLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 Q M+ +K L +S F NA G+ + TA D+A L++ + D+P+ + ++ Sbjct: 135 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 194 Query: 192 GLE--IKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 + +TN + G DG+KTGFT ++G+ +A QGD +I V+ Sbjct: 195 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 254 Query: 244 LGALDRNTRNKVSASLLSMGF 264 +G + R + L+S F Sbjct: 255 MGTSSKTKRFTETNKLMSYAF 275 >gi|239998641|ref|ZP_04718565.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae 35/02] gi|240013763|ref|ZP_04720676.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae DGI18] gi|240115295|ref|ZP_04729357.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID18] gi|240120831|ref|ZP_04733793.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID24-1] gi|240125386|ref|ZP_04738272.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae SK-92-679] gi|240127841|ref|ZP_04740502.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae SK-93-1035] gi|260440888|ref|ZP_05794704.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae DGI2] gi|268594495|ref|ZP_06128662.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02] gi|268600975|ref|ZP_06135142.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18] gi|268683987|ref|ZP_06150849.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-92-679] gi|268686238|ref|ZP_06153100.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-93-1035] gi|268547884|gb|EEZ43302.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02] gi|268585106|gb|EEZ49782.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18] gi|268624271|gb|EEZ56671.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-92-679] gi|268626522|gb|EEZ58922.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae SK-93-1035] Length = 389 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 17/336 (5%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I AND A+ +A+ L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R ++ LL+ K + I + + KE Sbjct: 270 RASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKM 329 Query: 306 YNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 ++ + K+ + KI + I +K Sbjct: 330 AEQILETIQPIPAPVKKGQILGKIKIRQNGHTIAEK 365 >gi|255029224|ref|ZP_05301175.1| hypothetical protein LmonL_09016 [Listeria monocytogenes LO28] Length = 432 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 32/294 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 4 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 63 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 64 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 123 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN + L L F+NA G+ + TAR Sbjct: 124 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 183 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 184 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 243 Query: 220 FTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYNK 267 T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 244 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNF 297 >gi|47092644|ref|ZP_00230431.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b H7858] gi|47018939|gb|EAL09685.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b H7858] Length = 433 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 32/294 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN + L L F+NA G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYNK 267 T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNF 298 >gi|4104145|gb|AAD01953.1| penicillin-binding protein homolog [Listeria monocytogenes] Length = 433 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 32/294 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN + L L F+NA G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYNK 267 T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNF 298 >gi|38142345|dbj|BAD00975.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 78/366 (21%), Positives = 151/366 (41%), Gaps = 34/366 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L + + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 LTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDRMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFDGITITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKTIPAPLEAGT 359 Query: 328 LLKNKI 333 ++ + Sbjct: 360 VVGHLT 365 >gi|153810801|ref|ZP_01963469.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174] gi|149833197|gb|EDM88279.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174] Length = 393 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 33/293 (11%) Query: 18 PFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71 P S+ + K P L+D ++G V+ + + P AS TK+MT + Sbjct: 19 PGWSVFASEKSPGNLYALSAVLMDGDSGRVLYQKSGNTPRPNASTTKVMTCILALE---N 75 Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 K + +S NA P G L++ L L+++S ND AVAIAE + + Sbjct: 76 GKG--DDYVKVSANAVSQPEVRLGLSIGEQYYLEDLLYSLMLQSHNDSAVAIAECIGGSV 133 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHY 187 F MN +K +G THF+ +G+ H+TTA D+A++ ++ Sbjct: 134 DNFSAMMNAKAKEIGCKNTHFVTPNGLDAENSGGTHHTTAEDLALIMRYAI-HNDVFLKI 192 Query: 188 FQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 Q + + NTN + G KTG+T +G+ V + + +++ I Sbjct: 193 TQTEEYSFSDLSKKRHFSVHNTNALLHMTDGVLAGKTGYTGDAGYCYVCACQKDNKTFII 252 Query: 242 VILGALD---RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 +LGA +N + + LL+ G N R F+Q+ + +P Sbjct: 253 ALLGAGWPDHKNYKWHDTLELLNYGNSNYEYR--------SFWQEPELSYIPV 297 >gi|301794006|emb|CBW36404.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae INV104] gi|332204876|gb|EGJ18941.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA47901] Length = 413 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 153/363 (42%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TAY+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK F+ M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFIDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|225378650|ref|ZP_03755871.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM 16841] gi|225209487|gb|EEG91841.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM 16841] Length = 461 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 127/334 (38%), Gaps = 30/334 (8%) Query: 4 FLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L II+ L + + A P L++ +TG ++ E D PAS+TK+ Sbjct: 14 ILTIISAVCLGKVDVKAADYWPDAPETLSPGVILMEESTGTILYEKNSDEAHYPASITKI 73 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 MT + L+ +T S +A + S G MTL+ L ++++SAN+ Sbjct: 74 MTTLLALE-----NGNLSDMVTFSDDAINNTEGSGIARDYGEQMTLEQCLYGVMLESANE 128 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A+AE + T + FV MN +K LG + THF N HG+ HYTTA DMA+++ Sbjct: 129 CAYAVAEHVGGTVENFVDMMNAKAKELGCTNTHFANPHGLQDENHYTTAHDMALIAQA-A 187 Query: 179 TDFPQYMHYFQIKGLEIKGK-----------------KYPNTNWAVGTFLGADGMKTGFT 221 + K I Y N N + G KTG+T Sbjct: 188 YQNETFRIIIGTKMYTIPPTNKHAEETVLRNHHDMLCTYHNANR-KYLYPYCVGGKTGYT 246 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 + +V A + +LI V++ N + +L F N Sbjct: 247 ATANSTLVTYAEKDGMTLICVVMDTQSPNQ-FIDTVNLFDYAFDNFQVLNVAENDTDYSA 305 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315 + + N + KE + + E D Sbjct: 306 ETTVDNGNLDNIAPFVELDKEAVIVLPKTAEFSD 339 >gi|15902820|ref|NP_358370.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6] gi|116516506|ref|YP_816254.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39] gi|1620468|emb|CAA67776.1| D,D-carboxypeptidase [Streptococcus pneumoniae] gi|15458372|gb|AAK99580.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6] gi|116077082|gb|ABJ54802.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39] Length = 413 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 148/363 (40%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|18311103|ref|NP_563037.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] gi|18145786|dbj|BAB81827.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str. 13] Length = 444 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|296449308|ref|ZP_06891091.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296880760|ref|ZP_06904710.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296261835|gb|EFH08647.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296428255|gb|EFH14152.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 414 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 25/291 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+ + + I P + A+T +P L+D T ++ E D ASL+K+M Sbjct: 13 LTILTLIFIF-ITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 72 TFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHY-------TTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H +TA D+ Sbjct: 132 LAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAHDI 191 Query: 171 AILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 L + + + Q+ K + NTN + + G DG+KTG+T +G+ Sbjct: 192 VTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYC 251 Query: 228 IVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + S + + LI V+LG ++ R SASLL G N +K Sbjct: 252 LAFSMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKK 302 >gi|47095562|ref|ZP_00233170.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 1/2a F6854] gi|47015992|gb|EAL06917.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 1/2a F6854] Length = 433 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 32/294 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + K +TIS+ A + SN + G T+ + + + SAN A+ Sbjct: 65 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN + L L F+NA G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVIL----GALDRNT--RNKVSASLLSMGFYNK 267 T +G + A+A+Q +I V+L GA +T R + +L F N Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNF 298 >gi|319654383|ref|ZP_08008470.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2] gi|317393882|gb|EFV74633.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2] Length = 389 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 15/276 (5%) Query: 1 MRQFLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M+Q +V+I +A L + F S + L+D NTG ++ E PASLT Sbjct: 1 MKQVIVLIFIASLFSGFQKTIHASDSPVVSSGSAILIDANTGEILFEKKATEEMYPASLT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+ TA K L ++I N + + ++G ++L ++ L++ S N Sbjct: 61 KIATAIYAIE-----KGNLNDIVSIGSNPRKIEGTRVYLEEGERVSLRKLIQGLLINSGN 115 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D VAIAE + + + F +++N+ LGL T FMN HG+ H TTA D+A L+ Sbjct: 116 DAGVAIAEHMDGSIETFSKNLNSYLAGLGLKNTVFMNPHGLFNPEHVTTAEDLATLTQ-Y 174 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVAS 231 + ++ F K LE KG + T + + G G KTG+ SG +V + Sbjct: 175 AMENQEFSEIFGTKELEWKGATWKTTLYTHHKLMRELPYEGVIGGKTGYVDQSGHTLVTA 234 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 A + + SLI V L A + + LL GF + Sbjct: 235 AKRKELSLIVVTLNASSQELAYDDTKKLLDYGFNHY 270 >gi|168215748|ref|ZP_02641373.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] gi|182382096|gb|EDT79575.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC 8239] Length = 444 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|311030756|ref|ZP_07708846.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13] Length = 384 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 144/323 (44%), Gaps = 20/323 (6%) Query: 5 LVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + ++++ + S P AE L++ +G +I E AS+TK+MTA Sbjct: 10 IALVSLLIFSICIPHNVHAEQVGVSARNAVLIEQESGRIIYEKDAHDKQRIASITKVMTA 69 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 + L + +S+ A S+ K G + L++ + L+++S ND AVA Sbjct: 70 ILAIES-----GKLDEIVKVSEKAVRAEGSSLYLKPGEKIKLEHLVYGLMLRSGNDSAVA 124 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDF 181 IAE + + + FV MN + LG++ T F N HG+ H HY++A DMA+L+ R + Sbjct: 125 IAEHVGGSLEGFVFMMNEKAAELGMTNTEFANPHGLDDHENHYSSAYDMALLT-RYAMEN 183 Query: 182 PQYMHYFQIKGL-------EIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAI 233 ++ K E + + N + G + A G KTG+T + ++ +A Sbjct: 184 DKFKEVAGTKVYRAPAAPGESWDRSWTNKHRLVTGMYQYATGGKTGYTKRAKRTLITTAS 243 Query: 234 QGDQSLIAVILGALDRNTRNKVS--ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291 + +IAV L D + + + Y+ ++ +++ + DFY+ +S + Sbjct: 244 KEGLDVIAVTLNGPDDWKDHIYMFNRAFVDYKLYDIAEKGELDNVKDDFYKGKVSLSR-D 302 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 I + ++E + ++ K Sbjct: 303 IKFPMTQKERENVRIKVTLETPK 325 >gi|312127658|ref|YP_003992532.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] gi|311777677|gb|ADQ07163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor hydrothermalis 108] Length = 374 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 144/335 (42%), Gaps = 29/335 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP ++ TG ++ E D AS Sbjct: 4 RAFVLVFALIITTTFGKICYANEKKNLPQVSSKSAIAIEWVTGKILFEKNKDLKLPMAST 63 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V K I I A P S+ +KG + + + L L++ S Sbjct: 64 TKIMTAILVLENCDVNK-----EIEIPLQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 118 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV+ MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 119 NDAAVALAIATAGDVKRFVKLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLAKLA-A 177 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 178 YAMRNPIFRQIVKTTEREVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 237 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---------KINYIIKDFY 281 S + D +I V+L A D + +L + N K K+ D+ Sbjct: 238 SVCRDDFRVICVVLNAPDM---WNDTQKILDYCYNNFKVVKLLPGEIGYAKVKNGKSDWV 294 Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 + + + + E C + E++ + K+K Sbjct: 295 KVGTTYQCYWVVESSCLPKLEVLLQAAEAPIEKNK 329 >gi|255654539|ref|ZP_05399948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-23m63] Length = 409 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 28/298 (9%) Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNP 53 M+ + L I+ + + I P + A+T +P L+D T ++ E D Sbjct: 1 MKGKIKQLTILTLIFIF-ITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPL 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASL+K+MT + + + + T + I K+ + S K G ++L ++ L++ Sbjct: 60 ASLSKMMTFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLML 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHY------ 164 S ND A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H Sbjct: 120 VSGNDAALAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIEN 179 Query: 165 -TTARDMAILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +TA D+ L + + + Q+ K + NTN + + G DG+KTG+ Sbjct: 180 ISTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGY 239 Query: 221 TCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 T +G+ + S + + LI V+LG ++ R SASLL G N +K Sbjct: 240 TDNAGYCLAFSMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKK 297 >gi|291484748|dbj|BAI85823.1| penicillin-binding protein 5* [Bacillus subtilis subsp. natto BEST195] Length = 382 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 20/326 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F + + M+S + +++ A ++D +G V+ AS Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + +T+S NA S +G + L + + L+++S Sbjct: 61 ITKIMTAVLAIES-----GKMDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE + + FV MN ++ LG+ T F N HG+ H HY+TA DMAIL+ Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175 Query: 175 -WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 + +K Q + +I E + N N + + + G KTG+T + +V++A Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + LIAV + + + + F + + I Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292 Query: 293 SEEV----CTTQKEIINYNTQMKEAK 314 ++ +KE + NT + + K Sbjct: 293 KRDITYLLTEEEKEDVKINTTLLKPK 318 >gi|331085110|ref|ZP_08334196.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407893|gb|EGG87383.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 402 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 23/289 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ I +L P + E + L+D + G V+ E AS TK Sbjct: 1 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + + LT + +S+NA+ P + + L + L L+++S ND Sbjct: 61 IMTCILALE-----EGNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 115 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILS 174 AVAIAE + + + F MN +K +G T+F+ +G+ H TTA D+A + Sbjct: 116 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDNGEHSTTAEDLARIM 175 Query: 175 WRIKTDFPQ---YMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 P+ ++ Q + N N + GA KTGFT +G Sbjct: 176 SYCILKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAG 235 Query: 226 FNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRK 271 + V + ++ + +LG N + + L++ G N R+ Sbjct: 236 YCYVGALESRGRTFVVALLGCGWPNNKGYKWADTKRLMTYGMENYELRE 284 >gi|302672276|ref|YP_003832236.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio proteoclasticus B316] gi|302396749|gb|ADL35654.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio proteoclasticus B316] Length = 488 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 124/310 (40%), Gaps = 50/310 (16%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK----------------------------LPYYTL 33 R L +I +L+ F S AET + Sbjct: 21 RGLLSVITFMILAYSLSFTSFAETIDYQAEAEQRKELPIQSNETSGWPEGPQIGAEAAIV 80 Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90 +D +TG ++ PAS TK+MT + A L+ IT S A Sbjct: 81 MDASTGTILYAKNIHEELYPASTTKIMTCLLAVE-----NASLSDKITFSNEAVFSVPRD 135 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ G ++TL+ AL ++V SAN++A A+AE + + FV MN + LG + T Sbjct: 136 GSSIGMDVGESITLEQALFGIMVGSANEVANAVAEHVSGSIDAFVNLMNQRASELGCTNT 195 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKT--------DFPQYMHYFQIKGLEIKGKKYPN 202 HF N +G+ HYT+A D+A+++ + P+Y +F + N Sbjct: 196 HFNNTNGLQDDDHYTSAYDLALIARAFFNNELLCKVGNTPRY--HFTETSTQPDDFYLNN 253 Query: 203 TNWAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259 + + F G G KTG+T + +V A + LI VIL + + +L Sbjct: 254 KHKLITGEVKFDGIIGGKTGYTDQARETLVTCAERDGVKLICVILKEESPSQ-FTDTVTL 312 Query: 260 LSMGFYNKTD 269 + GF N T Sbjct: 313 FNYGFNNFTS 322 >gi|182624061|ref|ZP_02951849.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] gi|177910954|gb|EDT73308.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str. JGS1721] Length = 444 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|260682216|ref|YP_003213501.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260685815|ref|YP_003216948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260208379|emb|CBA60888.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260211831|emb|CBE02232.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] Length = 414 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 25/291 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P L+D T ++ E D ASL+K+M Sbjct: 13 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 72 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGH-------YTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H +TA D+ Sbjct: 132 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 191 Query: 171 AILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 L + + + Q+ K + NTN + + G DG+KTG+T +G+ Sbjct: 192 VTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYC 251 Query: 228 IVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + S + + LI V+LG ++ R SA+LL G N +K Sbjct: 252 LAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKK 302 >gi|313616580|gb|EFR89415.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria innocua FSL S4-378] Length = 433 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 122/294 (41%), Gaps = 32/294 (10%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 + ++ ++S + A ++ +TG ++ D AS+TK+M Y++ Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64 Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + + +TIS+ A + SN + G ++ + + + SAN A+ Sbjct: 65 LEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAMAIYSANGAAI 124 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTAR 168 AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR Sbjct: 125 AISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGGPTDENKMTAR 184 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTG 219 MA L+ + D+P + E + N NW + + G DG+KTG Sbjct: 185 GMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTG 244 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNK 267 T +G + A+A+Q ++ V+L A + R + +L F N Sbjct: 245 TTDYAGMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYAFNNF 298 >gi|196230570|ref|ZP_03129432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] gi|196225500|gb|EDY20008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus Ellin428] Length = 355 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 11/239 (4%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 +LD TG V+ E D P PAS TK+MTA +V + L + S+ Sbjct: 88 AIVLDELTGKVLYEKNADAPQFPASCTKIMTALLVIE-----EGDLDHEVVCDVEDSKVG 142 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S+ K T L L++KSAND+A A+ + + F + MN ++ LG T Sbjct: 143 ESSLNLKPDQHFTRRQMLYGLMLKSANDVAHALGRDNAGSIEAFAEKMNRRARELGAQNT 202 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWA 206 HF+N +G+ HYTT RD+A+++ P + + N N Sbjct: 203 HFVNPNGLHNPEHYTTPRDLALIARA-AMHQPFFRQVVGTRDYNWNVNGVVDPLHNHNRL 261 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + F G G+KTG+T + +V+SA++G++ +I+V++ D+ S LLS G Sbjct: 262 LERFPGCTGVKTGYTIPAQQVLVSSAMRGNREVISVVMHT-DKPGIWNDSMLLLSYGLD 319 >gi|168212842|ref|ZP_02638467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] gi|170715638|gb|EDT27820.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE str. F4969] Length = 444 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|254974115|ref|ZP_05270587.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-66c26] gi|255091514|ref|ZP_05320992.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP 107932] gi|255313242|ref|ZP_05354825.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-76w55] gi|255515932|ref|ZP_05383608.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-97b34] gi|255649025|ref|ZP_05395927.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-37x79] gi|306519141|ref|ZP_07405488.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] Length = 409 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 28/298 (9%) Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNP 53 M+ + L I+A+ + I P + A+T +P L+D T ++ E D Sbjct: 1 MKGKIKQLTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPL 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASL+K+MT + + + + T + I K+ + S K G ++L ++ L++ Sbjct: 60 ASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLML 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGH------- 163 S ND A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H Sbjct: 120 VSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIEN 179 Query: 164 YTTARDMAILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +TA D+ L + + + Q+ K + NTN + + G DG+KTG+ Sbjct: 180 MSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGY 239 Query: 221 TCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 T +G+ + S + + LI V+LG ++ R SA+LL G N +K Sbjct: 240 TDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKK 297 >gi|126698096|ref|YP_001086993.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630] Length = 414 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 25/291 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 L I+A+ + I P + A+T +P L+D T ++ E D ASL+K+M Sbjct: 13 LTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMM 71 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + + + + T + I K+ + S K G ++L ++ L++ S ND A Sbjct: 72 TFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAA 131 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGH-------YTTARDM 170 +AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H +TA D+ Sbjct: 132 IAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDI 191 Query: 171 AILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227 L + + + Q+ K + NTN + + G DG+KTG+T +G+ Sbjct: 192 VTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYC 251 Query: 228 IVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + S + + LI V+LG ++ R SA+LL G N +K Sbjct: 252 LAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKK 302 >gi|16079376|ref|NP_390200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310236|ref|ZP_03592083.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. 168] gi|221314560|ref|ZP_03596365.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319482|ref|ZP_03600776.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. JH642] gi|221323758|ref|ZP_03605052.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. SMY] gi|321311791|ref|YP_004204078.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|461914|sp|P35150|DACB_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacB; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5*; Short=PBP-5*; Flags: Precursor gi|410134|gb|AAA67490.1| penicillin-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|2634754|emb|CAB14251.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) [Bacillus subtilis subsp. subtilis str. 168] gi|320018065|gb|ADV93051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 382 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 20/326 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F + + M+S + +++ A ++D +G V+ AS Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + +T+S NA S +G + L + + L+++S Sbjct: 61 ITKIMTAVLAIES-----GKMDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE + + FV MN ++ LG+ T F N HG+ H HY+TA DMAIL+ Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175 Query: 175 -WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 + +K Q + +I E + N N + + + G KTG+T + +V++A Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 + LIAV + + + + F + + I Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292 Query: 293 SEEV----CTTQKEIINYNTQMKEAK 314 ++ +KE + NT + + K Sbjct: 293 KRDITYLLTEEEKENVKINTTLLKPK 318 >gi|168484754|ref|ZP_02709699.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00] gi|172042076|gb|EDT50122.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00] Length = 413 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|218508407|ref|ZP_03506285.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil 5] Length = 312 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 2/246 (0%) Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T Sbjct: 1 AGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGT 60 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190 ++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF + Sbjct: 61 QEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSL 120 Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 +G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG Sbjct: 121 EGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLA 180 Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 R +A+LL G + +K + Q ++V +I+ ++C+ + I T+ Sbjct: 181 ARADATANLLQKGLTTQFPGNDTLGSLKPYGQGQ--DQVTDITADICSAKGAKIRSETRD 238 Query: 311 KEAKDK 316 + + K Sbjct: 239 EVGRMK 244 >gi|255099621|ref|ZP_05328598.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-63q42] gi|328887546|emb|CAJ67349.2| D-alanyl-D-alanine carboxypeptidase, S11 peptidase family [Clostridium difficile] Length = 409 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 28/298 (9%) Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNP 53 M+ + L I+A+ + I P + A+T +P L+D T ++ E D Sbjct: 1 MKGKIKQLTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPL 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASL+K+MT + + + + T + I K+ + S K G ++L ++ L++ Sbjct: 60 ASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLML 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGH------- 163 S ND A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H Sbjct: 120 VSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIEN 179 Query: 164 YTTARDMAILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +TA D+ L + + + Q+ K + NTN + + G DG+KTG+ Sbjct: 180 MSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGY 239 Query: 221 TCASGFNIVASA-------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 T +G+ + S + + LI V+LG ++ R SA+LL G N +K Sbjct: 240 TDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKK 297 >gi|38142281|dbj|BAD00943.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142299|dbj|BAD00952.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142351|dbj|BAD00978.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGCASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|15900755|ref|NP_345359.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae TIGR4] gi|148993686|ref|ZP_01823133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP9-BS68] gi|149026353|ref|ZP_01836508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP23-BS72] gi|168485819|ref|ZP_02710327.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC1087-00] gi|168490307|ref|ZP_02714506.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP195] gi|168493026|ref|ZP_02717169.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC3059-06] gi|182683787|ref|YP_001835534.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CGSP14] gi|303255291|ref|ZP_07341362.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS455] gi|303260392|ref|ZP_07346361.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP-BS293] gi|303262749|ref|ZP_07348687.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS292] gi|303265038|ref|ZP_07350952.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS397] gi|303267132|ref|ZP_07353001.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS457] gi|303269372|ref|ZP_07355143.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS458] gi|307127577|ref|YP_003879608.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 670-6B] gi|14972344|gb|AAK74999.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae TIGR4] gi|38142277|dbj|BAD00941.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142279|dbj|BAD00942.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142287|dbj|BAD00946.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142305|dbj|BAD00955.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142307|dbj|BAD00956.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142309|dbj|BAD00957.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142325|dbj|BAD00965.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142329|dbj|BAD00967.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142347|dbj|BAD00976.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142349|dbj|BAD00977.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|55167245|dbj|BAD67449.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817134|gb|AAY56863.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817138|gb|AAY56865.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|147927766|gb|EDK78789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP9-BS68] gi|147929315|gb|EDK80314.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP23-BS72] gi|182629121|gb|ACB90069.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CGSP14] gi|183570937|gb|EDT91465.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC1087-00] gi|183571353|gb|EDT91881.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP195] gi|183577020|gb|EDT97548.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CDC3059-06] gi|221327900|gb|ACM17686.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327904|gb|ACM17688.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327908|gb|ACM17690.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327914|gb|ACM17693.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327916|gb|ACM17694.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327922|gb|ACM17697.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327924|gb|ACM17698.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|301801696|emb|CBW34402.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae INV200] gi|302597760|gb|EFL64835.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS455] gi|302636071|gb|EFL66568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS292] gi|302638427|gb|EFL68893.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP-BS293] gi|302641090|gb|EFL71466.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS458] gi|302643340|gb|EFL73618.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS457] gi|302645398|gb|EFL75631.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae BS397] gi|306484639|gb|ADM91508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 670-6B] gi|332077286|gb|EGI87748.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA17545] gi|332204028|gb|EGJ18095.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA47368] Length = 413 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|49475609|ref|YP_033650.1| penicillin-binding protein [Bartonella henselae str. Houston-1] gi|49238416|emb|CAF27643.1| Penicillin-binding protein [Bartonella henselae str. Houston-1] Length = 387 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 14/344 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR L I AE L+D +T V+ E D P+ PASL K Sbjct: 1 MRTVLRIFFTLFWMLTLDGRGKAEDFQTSAQQLLLVDDDTDTVLFEKQSDIPFFPASLAK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 LMTA V+F LKE T +S+NA + K + +++ + L+ LI+ Sbjct: 61 LMTAEVIFHQLKEGLLSNTQTFKVSENAWRKGGAPSGTTTMFAKVKTEISVSDLLRGLII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 + ND A+ +AE + +E F + MN +K LGL ++F+N G+ + + T RDM L Sbjct: 121 VNGNDAAITLAEGVSGSEADFAKLMNQRAKALGLEHSYFVNPTGLPEEEQFVTLRDMMTL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I +P Y ++ N N + +G +G G++ GF++V +A Sbjct: 181 TRHIARAYPNYYILYREPHFTWNKIFQRNKNPLISKEIGVEGFGFGYSEEEGFSMVVAAY 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVP 290 + + L I G + K +L G F KT K + N VP Sbjct: 241 KNHRHLFLAINGLQNGKGHTKEIERILQWGMTAFDLKTIFTKGETVGHASVYGGEQNSVP 300 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 I + + N + + K K + + +L + Sbjct: 301 LIVKGPI----RFMLSNEKKVDVKAKIKYRGPLKAPIILGQPVG 340 >gi|325661133|ref|ZP_08149760.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472640|gb|EGC75851.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium 4_1_37FAA] Length = 404 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 23/289 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ L+ I +L P + E + L+D + G V+ E AS TK Sbjct: 3 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 62 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MT + + LT + +S+NA+ P + + L + L L+++S ND Sbjct: 63 IMTCILALE-----EGNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 117 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILS 174 AVAIAE + + + F MN +K +G T+F+ +G+ H TTA D+A + Sbjct: 118 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDKGEHSTTAEDLARIM 177 Query: 175 WRIKTDFPQ---YMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 P+ ++ Q + N N + GA KTGFT +G Sbjct: 178 SYCILKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAG 237 Query: 226 FNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRK 271 + V + ++ + +LG N + + L++ G N R+ Sbjct: 238 YCYVGALESRGRTFVVALLGCGWPNNKGYKWADTRRLMTYGMENYELRE 286 >gi|288904540|ref|YP_003429761.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Streptococcus gallolyticus UCN34] gi|325977511|ref|YP_004287227.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731265|emb|CBI12815.1| putative penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase) [Streptococcus gallolyticus UCN34] gi|325177439|emb|CBZ47483.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 412 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 141/363 (38%), Gaps = 30/363 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ A+ + A+ + + ++ TG V+ E P AS+T Sbjct: 1 MKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIASMT 60 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIV 113 K++T Y+V+ + E K T ++IS A + SN + T++ + +V Sbjct: 61 KILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEARE-YTVEQLVNAAMV 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160 SAN A+A+AE + TE KFV M + G++ +NA G+ Sbjct: 120 ASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGSSS 179 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215 + +ARD+AI++ + T++P + + G N+ + G DG Sbjct: 180 TDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDG 239 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRK 271 +KTG T +G + VA++ + +I+V++ A D R + + LL N Sbjct: 240 LKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEMVT 299 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + + N+ S ++ + + D ++ ++ Sbjct: 300 LVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSADFSTNADGYDAPITKGQ 359 Query: 332 KIT 334 KI Sbjct: 360 KIG 362 >gi|110800833|ref|YP_696799.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|168208823|ref|ZP_02634448.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] gi|110675480|gb|ABG84467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC 13124] gi|170713162|gb|EDT25344.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str. ATCC 3626] Length = 444 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 148/323 (45%), Gaps = 21/323 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A L + + P Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLA-LIMNVASKNPIID 192 Query: 186 HYFQIKGLEIKG-------KKYPNTNWAVGT---FLGADGM--KTGFTCASGFNIVASAI 233 + E+ N N + + D KTG+T S +A Sbjct: 193 EITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAK 252 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPN 291 +GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + Sbjct: 253 RGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLV 312 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 + E++ T K N E K Sbjct: 313 VPEDIYKTFKNSEIENLSTDEIK 335 >gi|327193414|gb|EGE60313.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CNPAF512] Length = 360 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 5/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A + Sbjct: 1 MIEASTGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60 Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + +++ +K + ++ AND + +AE + +E++F + M ++ +G+ Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F N+ G+ TAR+M L+ ++ +P YF E N N + Sbjct: 121 DKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G LGADG+ TGFT G++IVAS + + L + G R + + +L G Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240 Query: 268 TDRK 271 +R+ Sbjct: 241 ENRQ 244 >gi|294676801|ref|YP_003577416.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB 1003] gi|294475621|gb|ADE85009.1| D-alanyl-D-alanine carboxypeptidase-2 [Rhodobacter capsulatus SB 1003] Length = 386 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 6/249 (2%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + + D T V+ E D PAS++KLMT ++F L E + L T +S Sbjct: 24 DTRARTAWVYDLTTQTVLLEKDADVAVPPASMSKLMTLNMLFEALSEGRVTLDTTFAVST 83 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 A + S + ++ ++ +++ S ND V +AE L +E F M +K Sbjct: 84 KAKQMGGSTMFLNEMDRPSVRELMQGVVINSGNDACVVVAEGLAGSEGAFAAGMTERAKM 143 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYP 201 LG++ + F NA G + D+ IL+ R+ T FPQY F K + Sbjct: 144 LGMTRSTFANASGWPHPDQRMSMHDLGILAVRLITQFPQYYPLFSETQFNYKNRAPANAH 203 Query: 202 NTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 N N + ADG+KTG T +G+ +V SA+ GD+ ++ VI G R + + Sbjct: 204 NRNPLLKIPAADWHADGLKTGHTEEAGYGLVGSAVMGDRRIVFVISGLASEADRASEAEA 263 Query: 259 LLSMGFYNK 267 + + F Sbjct: 264 VANWAFRQF 272 >gi|59800884|ref|YP_207596.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA 1090] gi|240016201|ref|ZP_04722741.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA6140] gi|240080345|ref|ZP_04724888.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA19] gi|240112554|ref|ZP_04727044.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae MS11] gi|240117582|ref|ZP_04731644.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID1] gi|240123137|ref|ZP_04736093.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae PID332] gi|254493357|ref|ZP_05106528.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291] gi|268596491|ref|ZP_06130658.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19] gi|268598622|ref|ZP_06132789.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11] gi|268603285|ref|ZP_06137452.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1] gi|268681765|ref|ZP_06148627.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332] gi|59717779|gb|AAW89184.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein [Neisseria gonorrhoeae FA 1090] gi|226512397|gb|EEH61742.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291] gi|268550279|gb|EEZ45298.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19] gi|268582753|gb|EEZ47429.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11] gi|268587416|gb|EEZ52092.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1] gi|268622049|gb|EEZ54449.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332] Length = 389 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 145/336 (43%), Gaps = 17/336 (5%) Query: 18 PFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 P + A T + P + ++D + ++ + P PA+LT+LMTAY+VF +K Sbjct: 30 PTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSG 89 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTE 131 + I ++A S + G T++ D LK +I AND A+ +A+ L + Sbjct: 90 NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSI 149 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 + FVQ MN ++ LG+ T F N G+ + G +TA+D+++LS + DFP+Y F IK Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLSLLSEALMRDFPEYYPLFSIK 209 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 + + + N N + +G+K G T + G+N+ S + ++ + LG+ T Sbjct: 210 SFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269 Query: 252 RNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305 R ++ LL+ K + I + + KE Sbjct: 270 RASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKM 329 Query: 306 YNTQMKEAKD-----KESHFIDFEKITLLKNKITKK 336 ++ + K+ + KI + I +K Sbjct: 330 AEQILETIQPIPAPVKKGQILGKIKIRQNGHTIAEK 365 >gi|168490961|ref|ZP_02715104.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04] gi|221231651|ref|YP_002510803.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC 700669] gi|225854380|ref|YP_002735892.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA] gi|38142283|dbj|BAD00944.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142293|dbj|BAD00949.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142313|dbj|BAD00959.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142321|dbj|BAD00963.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142323|dbj|BAD00964.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142343|dbj|BAD00974.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142355|dbj|BAD00980.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817132|gb|AAY56862.1| penicillin-binding protein 3 [Streptococcus pneumoniae ATCC 700669] gi|183574667|gb|EDT95195.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04] gi|220674111|emb|CAR68630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC 700669] gi|221327902|gb|ACM17687.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327910|gb|ACM17691.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225723264|gb|ACO19117.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA] Length = 413 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|225858672|ref|YP_002740182.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 70585] gi|225720794|gb|ACO16648.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae 70585] Length = 413 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKTFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|253682095|ref|ZP_04862892.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] gi|253561807|gb|EES91259.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] Length = 412 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 142/323 (43%), Gaps = 22/323 (6%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 T L+D NTG ++ D + PAS TK+MTA + + L +T+ Sbjct: 28 PPTASADGVVLMDKNTGQILYSKNLDTQYPPASTTKIMTALLTLE-----NSNLNDVVTV 82 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 KNA S +G +T+ + L L+++SAND A+A++E + + K+FV MN + Sbjct: 83 GKNAVNVDGSKVYLFEGEKLTIKDLLHALLLQSANDSAIALSEHVSGSTKEFVNLMNKRA 142 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------ 196 K LG T+F+N HG+ H TTARD+ ++ + ++ I Sbjct: 143 KELGCKHTNFVNPHGLYDDKHRTTARDLGLILRELSK-HDEFKEIATTSMYYINPTNKEA 201 Query: 197 -GKKYPNTNWAV-----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 + N + V + G +G KTG+T S + VA+A + ++SLIA++L ++ Sbjct: 202 KKRPIWNKDKLVQKKSKYYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAILLH-DQKH 260 Query: 251 TRNKVSASLLSMGFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308 T L GF N T I+ + Y+ + +VP + E + +T Sbjct: 261 TYWNDVIKLFDYGFNNYTLETLYTKGQILCN-YKVTKNFKVPILGNEDFCYLRRKDAKDT 319 Query: 309 QMKEAKDKESHFIDFEKITLLKN 331 + DK F K ++ Sbjct: 320 PKLKIDDKSLISKSFSKGDIILT 342 >gi|86357779|ref|YP_469671.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] gi|86281881|gb|ABC90944.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42] Length = 360 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 5/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A + Sbjct: 1 MIEASTGTVLLAKNEDQSFSPASLAKLMTMDLVFDAVTKGQITLDTEYPVSEYAWRTGGA 60 Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + +++ +K + ++ AND + IAE + +E++F Q M ++ LG+ Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIIIAEGMAGSEQQFAQSMTRRARELGM 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F N+ G+ TAR+M L+ ++ +P YF + E N N + Sbjct: 121 EKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQQDFEWNKIFQRNRNPLL 180 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G LGADG+ TGF G++IVAS + + L + G R + + +L G Sbjct: 181 GLDLGADGLATGFAEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240 Query: 268 TDRK 271 R+ Sbjct: 241 ESRQ 244 >gi|149002408|ref|ZP_01827342.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS69] gi|237650527|ref|ZP_04524779.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI 1974] gi|237822666|ref|ZP_04598511.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI 1974M2] gi|147759345|gb|EDK66337.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP14-BS69] Length = 413 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 147/363 (40%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|148997049|ref|ZP_01824703.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP11-BS70] gi|168575530|ref|ZP_02721466.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016] gi|169833078|ref|YP_001694325.1| penicillin-binding protein 3 [Streptococcus pneumoniae Hungary19A-6] gi|307067470|ref|YP_003876436.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae AP200] gi|38142285|dbj|BAD00945.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142289|dbj|BAD00947.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142315|dbj|BAD00960.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142317|dbj|BAD00961.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|66817136|gb|AAY56864.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|147756749|gb|EDK63789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP11-BS70] gi|168995580|gb|ACA36192.1| penicillin-binding protein 3 [Streptococcus pneumoniae Hungary19A-6] gi|183578404|gb|EDT98932.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016] gi|221327906|gb|ACM17689.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327912|gb|ACM17692.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327918|gb|ACM17695.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|221327920|gb|ACM17696.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|306409007|gb|ADM84434.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae AP200] gi|327390225|gb|EGE88568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA04375] Length = 413 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|255305505|ref|ZP_05349677.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC 43255] Length = 409 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 28/298 (9%) Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNP 53 M+ + L I+A+ + I P + A+T +P L+D T ++ E D Sbjct: 1 MKGKIKQLTILALIFIF-ITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPL 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 ASL+K+MT + + + + T + I K+ + S K G ++L ++ L++ Sbjct: 60 ASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLML 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGH------- 163 S ND A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ H Sbjct: 120 VSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIEN 179 Query: 164 YTTARDMAILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220 +TA D+ L + + + Q+ K + NTN + + G DG+KTG+ Sbjct: 180 MSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGY 239 Query: 221 TCASGFNIVASAI-----QGDQ--SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 T +G+ + S + + ++ LI V+LG ++ R SASLL G N +K Sbjct: 240 TDNAGYCLAFSMMVPKDAKNERSHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKK 297 >gi|150391165|ref|YP_001321214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149951027|gb|ABR49555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 257 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 7/246 (2%) Query: 25 TNKLPYYTLLDTN-TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 L + V+ + + AS+TKLMT V+ + K T + +S Sbjct: 7 AQNARAAILFKASPNNKVLFQKHATKRLPIASITKLMTMLVLLDGIDAGKIKWTDKVEMS 66 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 A+ S K G + + + K +I+ SAND A+A+AE L T F+ MN +K Sbjct: 67 PAAASLYGSKIHLKPGEKLPVGDMFKSMIIASANDAAIALAEHLSGTMDNFIDKMNQKAK 126 Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----K 198 LGL +HF+N+HG+ + HY++A D+ + + + + Y ++K I+ + Sbjct: 127 TLGLKNSHFVNSHGLFEDNHYSSAIDIVKMVS-MALRREEILKYSRLKYDYIRKEDNQLQ 185 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 K NTN +GT DG+KTG+T +G + A+A++ + LIAV+LG + R+K Sbjct: 186 KLVNTNKLIGTIPEVDGLKTGYTPLAGCCLAATALKDNVRLIAVVLGEPRKAVRDKEVIE 245 Query: 259 LLSMGF 264 +L+ GF Sbjct: 246 MLNYGF 251 >gi|332073203|gb|EGI83682.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA17570] Length = 413 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTTTSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|205371955|ref|ZP_03224774.1| D-alanine carboxypeptidase [Bacillus coahuilensis m4-4] Length = 453 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 137/338 (40%), Gaps = 41/338 (12%) Query: 17 FPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 P ++ A L++ TG ++ E + AS+TK+MT +++ + E + Sbjct: 25 APSVAEASDPLNINADAAILVEAETGKILYEKNSETALGVASMTKMMTEFLLLEAISEGR 84 Query: 74 AMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 +++S + + SN K S ++ + + + SAN + IAE+L Sbjct: 85 VSFDQMVSVSDYGHRISQDTSLSNVPLKLDSQYSIKELYESMAIYSANGATITIAEALAG 144 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSW 175 +E FV+ MN + LGL F+N+ G+ + +A D A L++ Sbjct: 145 SETNFVKMMNEKAAELGLENYKFVNSTGLNNADLLGQHPQGTGETEENVMSANDTATLAY 204 Query: 176 RIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAV----GTFLGADGMKTGFTCASG 225 + T +P+ + I L + N NW + + G DG+KTG T +G Sbjct: 205 ELLTRYPEVLETASIPKLTFREGIADEQTNMDNWNWMLPSLVYGYEGMDGLKTGTTDFAG 264 Query: 226 FNIVASAIQGDQSLIAVILGALDR------NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 + +A + D I V++ A + R + + +L F N + + I+ Sbjct: 265 ASFTGTAKRNDMRFITVVMNAKNASGTSTYQARFEETKKMLDYAFANYS----VEEIVPA 320 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317 ++ N +P + + + + T + + +KE Sbjct: 321 GFKLNDQETMPVVKGKEDSVGISSESALTAVVKNGEKE 358 >gi|253580937|ref|ZP_04858199.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847779|gb|EES75747.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 411 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 52/312 (16%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLP-----------------------------Y 30 M++FL ++ +L++ AET+ P Sbjct: 10 MKRFLTGMLCAGILTSQPAVTYAAETSATPEAGHSETYSQASDIDSVKGWPTGPNIEGQS 69 Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--- 87 L+D T ++ PAS+TK+MTA + +L + IT+S+ A+ Sbjct: 70 AVLMDAVTDTILYSKNAKDKLYPASITKIMTALLACEYL-----NMDDTITMSQEAAYGI 124 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E S+ + G T++ AL L+++SAN++A+A+AE + KKFV+ MN + LG Sbjct: 125 EAGSSSIYAETGEVFTVEQALMALMLESANEMALALAEKTSGSVKKFVELMNQRAAQLGC 184 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYPNTNWA 206 THF N +G+ HYTTA DM ++ P++ + + EI K T + Sbjct: 185 KNTHFNNPNGLPDETHYTTAGDMMKIAKAAW-YNPRFRKFVTTQVYEIPPTNKQSETRYL 243 Query: 207 VG----------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256 + + G G KTG+T A+G +V A +G+ LIAV+L N + Sbjct: 244 LNHHKMMPGQSYAYDGVLGGKTGYTDAAGSTLVTYAKRGNSILIAVVLN--STNGAFPDT 301 Query: 257 ASLLSMGFYNKT 268 SLL GF N Sbjct: 302 TSLLDYGFDNFE 313 >gi|229043310|ref|ZP_04191030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] gi|229144168|ref|ZP_04272582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228639176|gb|EEK95592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24] gi|228726024|gb|EEL77261.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676] Length = 363 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 135/323 (41%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKINSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 236 SASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 291 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK + D K+ Sbjct: 292 EKKNVVLKVELDKSTKLTDGVKV 314 >gi|182419858|ref|ZP_02951098.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237666495|ref|ZP_04526480.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376406|gb|EDT73988.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521] gi|237657694|gb|EEP55249.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 413 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 123/288 (42%), Gaps = 22/288 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+++ ++M +L P AET K L+D ++G ++ D + PAS Sbjct: 1 MKRYFKFLSMLLLFLCIPLTVHAETAKPEINAQGCALIDASSGTILYGKNEDCTFEPAST 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA V K LT +TI +N + + KG +T+ + L L+++S Sbjct: 61 TKVMTALVALD-----KCKLTDEVTIQENFTSVDGTAIGLLKGDVVTVHDLLLGLLMESG 115 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A +A + + F Q MN +K LG +AT F N G+ H TT D+A+ Sbjct: 116 NDCANELAYHVSGSIDSFAQLMNEKAKELGATATSFRNPSGLPDPEHLTTPHDLALFLRE 175 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP-------NTNWAVGT-----FLGADGMKTGFTCAS 224 ++ Q I P N N+ + + A K G+T + Sbjct: 176 AIK-NQDFLDIAQTPYATITMINNPERTIIINNKNYMINKNSKYYYKYALCGKNGYTTKA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 V+SA + LIA L A+D+N S+ + GF N + K Sbjct: 235 NHTYVSSAEKDGHILIASFLNAMDKNQNFFDMQSVFNYGFDNYSFVKL 282 >gi|38142333|dbj|BAD00969.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 33/354 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTISLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLRDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 Q+ V + E+ T Y ++ ++ S + F + Sbjct: 300 QQGDA---YQDSKAPVQDGKEDTVTAVAPEDIYL--IERVGNQSSQSVQFTPDS 348 >gi|225861235|ref|YP_002742744.1| penicillin-binding protein 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298255726|ref|ZP_06979312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503122|ref|YP_003725062.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus pneumoniae TCH8431/19A] gi|38142303|dbj|BAD00954.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142335|dbj|BAD00970.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142337|dbj|BAD00971.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142341|dbj|BAD00973.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142353|dbj|BAD00979.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|225727841|gb|ACO23692.1| penicillin-binding protein 3 [Streptococcus pneumoniae Taiwan19F-14] gi|298238717|gb|ADI69848.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus pneumoniae TCH8431/19A] Length = 413 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAISAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|311029700|ref|ZP_07707790.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus sp. m3-13] Length = 414 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 15/286 (5%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 Q VII + ++ AE L+D+ +G+ + E PAS+TK+ Sbjct: 6 QLCVIIPLLVMVFGNSITVHAEGPGDLFSESVILIDSKSGNTLYEKDSKREMYPASITKI 65 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 +TA + + L +T+S+NA + + +G +TL ++ L++ S ND Sbjct: 66 VTAIIAIE-----EGNLQDIVTVSENARDQDGTRVYLLEGEKVTLKKLVQGLLINSGNDA 120 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 AIAE L +EK F + MN K +G+ T+F N HG+ H TTA+DMA ++ Sbjct: 121 GTAIAEHLDGSEKAFAKRMNTFVKEKVGVKNTNFTNPHGLYHPDHVTTAQDMAKIAQYAM 180 Query: 179 TDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234 + K +E G+ + N + + + G G+K G+ SG +V SA + Sbjct: 181 K-NETFREIVGTKEMEWIGEGWETTLFNHHRLLWDYEGTTGVKNGYVPESGHTLVTSAKR 239 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNK-TDRKKINYIIKD 279 LI V + A + K + +LL GF N TD K ++ D Sbjct: 240 DGMDLIVVTMKAASKYYIYKDTMTLLDYGFANFITDEIKKGEMVTD 285 >gi|149010495|ref|ZP_01831866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP19-BS75] gi|147764976|gb|EDK71905.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP19-BS75] Length = 413 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEVSNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|167898320|ref|ZP_02485721.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 7894] Length = 276 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 3/208 (1%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--- 86 + ++D ++G + + D PASLTKLMTAYV F L+ +T++ + Sbjct: 58 SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117 Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146 + G + + + ++ LIV SAND A+ +A+ + + F MN+T++ LG Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177 Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206 + +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237 Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ 234 +G DGMKTG T A+G+ +V +A + Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKR 265 >gi|190891838|ref|YP_001978380.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652] gi|190697117|gb|ACE91202.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT 652] Length = 360 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 5/244 (2%) Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A + Sbjct: 1 MIEASTGTVLLAKNEDEGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60 Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 S + +++ +K + ++ AND + +AE + +E++F + M ++ +G+ Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 F N+ G+ TAR+M L+ ++ +P YF E N N + Sbjct: 121 EKAVFGNSTGLPGGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180 Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 G LGADG+ TGFT G++IVAS + + L + G R + + +L G Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240 Query: 268 TDRK 271 +R+ Sbjct: 241 ENRQ 244 >gi|38142331|dbj|BAD00968.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAISAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|331091250|ref|ZP_08340091.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404697|gb|EGG84236.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium 2_1_46FAA] Length = 400 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 140/341 (41%), Gaps = 32/341 (9%) Query: 1 MRQFL------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 MR L V+I S + + L+D ++G ++ E D A Sbjct: 1 MRVILKKRIGIVLIVTIFFSITAKAVEKPKELYAQSAVLMDADSGRILFEKNGDQRRAMA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TK+MT + + L + S+NA++ P + +KG T L + L L+++ Sbjct: 61 STTKIMTCILALE-----RGGLEGEVVASENAAKQPKVHLGVEKGETFRLRDLLYSLMLE 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDM 170 S ND AV IAE + + +KF + MN +K +G T+F+ +G+ H TTA ++ Sbjct: 116 SHNDSAVMIAEKVGGSVEKFAKMMNEKAKEIGCINTYFITPNGLDAKDDTGKHSTTAGEL 175 Query: 171 AILSWRIKTDFP---QYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFT 221 A + T P +++ K + + N N + GA KTGFT Sbjct: 176 AKIMSYCITQSPKKEEFLAITGQKSYQFTNMEKTRTYICHNHNAFLEMMEGAISGKTGFT 235 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKKINYI-I 277 +G+ V + + D++ + +LG N + + L+ G + + I Sbjct: 236 GEAGYCYVGALRRNDRTFVVALLGCGWPNNKTYKWSDTKKLMQYGLDSFQYKDIEPAIYF 295 Query: 278 KDFYQQNLSNEVPNISEEV----CTTQKEIINYNTQMKEAK 314 + +N + + +E+ C K+ I+ M + + Sbjct: 296 ETIPVENGIPQDEDFTEKAQLRFCVKGKKKISERILMSDEE 336 >gi|38142295|dbj|BAD00950.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 146/352 (41%), Gaps = 33/352 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325 Q+ V + E+ T Y ++ ++ S + F Sbjct: 300 QQGDA---YQDSKAPVQDGKEDTVTAVAPEDIYL--IERVGNQSSQSVQFTP 346 >gi|38142291|dbj|BAD00948.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142297|dbj|BAD00951.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|301799864|emb|CBW32439.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae OXC141] Length = 413 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEART 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|187778439|ref|ZP_02994912.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC 15579] gi|187772064|gb|EDU35866.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC 15579] Length = 418 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 148/368 (40%), Gaps = 54/368 (14%) Query: 16 IFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 FP +++A+ +K L+D+ TG +I PD P+ PAS TK+MTA + Sbjct: 18 FFPNVALAKDSKQNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTKIMTALLTLE-- 75 Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 + L +TI + S +G + + + L L++ SAND A A+AE L Sbjct: 76 ---RGNLDDIVTIGRKPPLADGSKIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSG 132 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 + F + MN +K LG ++T+F+N G+ H T+ARD+AI+ + P+Y Sbjct: 133 SLDNFSKDMNKRAKELGCTSTNFVNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIAT 191 Query: 190 IKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 I + N N + + G +G KTG+T S + VAS + + Sbjct: 192 TLSYNIPPTNKSKEKRPLWNENRLIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNH 251 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKT-----------------DRKKINYIIKDF 280 LI ++ ++N + L + GF N T + K Y +DF Sbjct: 252 RLIVALVHDKEKN-FFDDAVKLFNYGFNNFTLNLLYSKDSYVTTYTNDNLKVPLYASEDF 310 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQM-------KEAKDKESHF-----IDFEKITL 328 Y ++ + T + + + + +D E + L Sbjct: 311 YYLKPKDDNTTPDLRLENTNLKNLKFKKGDVVLSANLSRGSNSVGSLTLKSGVDHESVNL 370 Query: 329 LKNKITKK 336 KN + K Sbjct: 371 FKNNVITK 378 >gi|125973686|ref|YP_001037596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|256005769|ref|ZP_05430722.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281417842|ref|ZP_06248862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|125713911|gb|ABN52403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum ATCC 27405] gi|255990269|gb|EEU00398.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 2360] gi|281409244|gb|EFB39502.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum JW20] gi|316940119|gb|ADU74153.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium thermocellum DSM 1313] Length = 415 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 9/294 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 Q + M + + P ++AE K P L++ G ++ + P + + K+M Sbjct: 10 QCFTVAMMILFFSQSPVFAVAEPPEIKAPSAILMEVQRGQILYQKNPKLKLHVSCANKIM 69 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T + ++ L T IT+SK A + + G +++ + +++ SAND A Sbjct: 70 TGLIALEKMQN---QLNTNITVSKKAVSVEGAVLNLEVGGKYPVEDLIYSVLLGSANDSA 126 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +AE + EK FV+ MN ++ L + T+F N G+ YTTA D+A+L T Sbjct: 127 NVLAEYIGGDEKGFVELMNKKAQELEMKDTYFTNPTGLYDEKQYTTAYDLAVLIRYALTK 186 Query: 181 FPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238 + F K N+N ++ G DG KTG+ + +A + Q Sbjct: 187 SSTFNEMFSAKARPWVDGTQILINSNELFWSYDGVDGGKTGYNEIDRQTAITTATRNGQR 246 Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 LI ++L + + + S LL GF N ++ + + + ++V ++ Sbjct: 247 LICIVLDSPEE-SMYDDSVKLLDYGFLNFRTGILVSMG-QPLKKVTVGDKVIDL 298 >gi|306830534|ref|ZP_07463702.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427328|gb|EFM30432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 416 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 141/363 (38%), Gaps = 30/363 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ A+ + A+ + + ++ TG V+ E P AS+T Sbjct: 5 MKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIASMT 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIV 113 K++T Y+V+ + E K T ++IS A + SN + T++ + +V Sbjct: 65 KILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEARE-YTVEQLVNAAMV 123 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160 SAN A+A+AE + TE KFV M + G++ +NA G+ Sbjct: 124 ASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGSSS 183 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215 + +ARD+AI++ + T++P + + G N+ + G DG Sbjct: 184 TDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDG 243 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRK 271 +KTG T +G + VA++ + +I+V++ A D R + + LL N Sbjct: 244 LKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLEYVKSNYEMVT 303 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + + N+ S ++ + + D ++ ++ Sbjct: 304 LVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSADFSTNADGYDAPITKGQ 363 Query: 332 KIT 334 KI Sbjct: 364 KIG 366 >gi|229109023|ref|ZP_04238624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] gi|229126883|ref|ZP_04255895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228656823|gb|EEL12649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4] gi|228674492|gb|EEL29735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15] Length = 363 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 135/323 (41%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 236 SASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 291 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK + D K+ Sbjct: 292 EKKNVVLKVELDKSTKLTDGVKV 314 >gi|153953521|ref|YP_001394286.1| DacA1 [Clostridium kluyveri DSM 555] gi|146346402|gb|EDK32938.1| DacA1 [Clostridium kluyveri DSM 555] Length = 407 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 149/361 (41%), Gaps = 33/361 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + I ++ ++ T LP +LD TG V+ PD + PAS Sbjct: 1 MKKIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + L +T+ KN + +G +T+ + L L++ S Sbjct: 61 TTKIMTALLTLE-----NTNLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLAS 115 Query: 116 ANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND A A+AE + + +KF MN + LG T+F+N G+ H T+A+D+A++ Sbjct: 116 ANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALIM 175 Query: 175 WRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAV-----GTFLGADGMKTGFTC 222 + P+Y I K + N N + + G +G KTG+T Sbjct: 176 KELCK-NPEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYTT 234 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDF 280 S + V++A + Q LI ++ ++ T S SL + GF N + K ++ + Sbjct: 235 QSLHSYVSAATRNGQRLIVALVHDKNK-TFFPDSISLFNFGFDNFSLVKLYSKGDLVTTY 293 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE------SHFIDFEKITLLKNKIT 334 + N+S + S+ K+ + + + ++ I+ I Sbjct: 294 NKNNISVPLTAASDFYYVKNKDDAAVPSFTLKNSNLSVKFFNTGEVVEEATISFKGKNIG 353 Query: 335 K 335 K Sbjct: 354 K 354 >gi|169346809|ref|ZP_02865760.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] gi|169297091|gb|EDS79213.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str. JGS1495] Length = 444 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 19/322 (5%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 20 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGPTGEVLAEKNANEKLAPASTTKTMTALLT 78 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 79 VE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-----IKTD 180 + +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I + Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGM--KTGFTCASGFNIVASAIQ 234 + Y K + + N N + + D KTG+T S +A + Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253 Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNI 292 GD+ LI +LG ++ + + +LL GF N + K N ++K++Y + + + Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313 Query: 293 SEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 314 PEDIYKTFKNSEIENLSTDEIK 335 >gi|15894549|ref|NP_347898.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15024194|gb|AAK79238.1|AE007639_11 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325508682|gb|ADZ20318.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 425 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 58/377 (15%) Query: 1 MRQFLVIIAMAMLS------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 MR+ ++ M NI+ + L+D N+G ++ E + + PA Sbjct: 1 MRKLIIFTLTVMFLFSTININIYAKVPDPPNVSADGAVLMDGNSGQILYEKNMNASYPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITIS-----KNASEYPPSNSTFKKGSTMTLDNALK 109 S TK+MTA + K L + +S K + ++ G +T+ + L Sbjct: 61 STTKIMTALLTLE-----KCKLDDKVKVSNDFTTKYLALRDGNSIGITNGEELTVRDLLH 115 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L++ SAND AVA+AE + + + F MN + LG + T+F N +G+ H T+A+D Sbjct: 116 ALLLISANDAAVALAEHISGSPQAFATLMNKKAAELGCTNTNFKNPNGLYDKDHKTSAKD 175 Query: 170 MAILSWRIKTDFPQYMHYFQIKGL------------EIKGKKYPNTNWAV-----GTFLG 212 +A++ + +P+Y K + + N + V + Sbjct: 176 LALIMKELSK-YPEYQKISTTLNYQMSPTNNMDAEKTKKSRNFWNEDKLVYKNSKNYYDK 234 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 G K G+T S + V+ A + L+ ++ + T S +L GF N +K Sbjct: 235 CIGGKAGYTILSLHSFVSVANNNGRKLVVALVHSK-EKTFYDDSKALFEYGFNNFQQKKL 293 Query: 273 INY--IIKDFY-----------------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 + I++++Y +N S VP + + + +K+ + TQ+ A Sbjct: 294 FSKGDIVENYYLDGTKIPLLASEDYYYCTENGSKSVPKVQVDKNSLKKKYFSKGTQIMAA 353 Query: 314 KDKESHFIDFEKITLLK 330 K ID ++I LK Sbjct: 354 K----ISIDGKQIGTLK 366 >gi|291557282|emb|CBL34399.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a] Length = 409 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 14/281 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51 +++ + L+ + S+ ++ + + +TG V+ E+ Sbjct: 24 IKRITAGVTAFTLAVVMQGASLTAFSEGDVIEADSITKAAIVTEVSTGQVLYEHNSHERL 83 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS+TKLM + +++ + T IT + A+ S G M+ + ++ + Sbjct: 84 PMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSV 143 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D A Sbjct: 144 VIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTA 203 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTFLGADGMKTGFTCASGFN 227 ILS +++ Y +F + ++ G++ NTN + + G G KTG T +G Sbjct: 204 ILS-AAVSEYDCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGTTDKAGCC 262 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + A +G+ L AV LG + R LL+ GF Sbjct: 263 LAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGFSGFE 303 >gi|110802740|ref|YP_699397.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium perfringens SM101] gi|110683241|gb|ABG86611.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101] Length = 427 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 146/323 (45%), Gaps = 21/323 (6%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65 I ++ + +N+F ++ E K L+D TG V+AE + PAS TK MTA + Sbjct: 3 FIFSLILSTNVFAESNVPEI-KGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 61 Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125 KA L +TI KN + ++G T++ L L+++SAND AVA+AE Sbjct: 62 VE-----KANLNDIVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 116 Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185 + +E +F + MN ++ LG THF+NA G+ + H TT D+A++ P Sbjct: 117 HISGSEGEFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASK-NPIID 175 Query: 186 HYFQIKGLEIKG-------KKYPNTNWAVGT---FLGADGM--KTGFTCASGFNIVASAI 233 + E+ N N + + D KTG+T S +A Sbjct: 176 EITKKTVYEMPKSIVSGEPIWANNNNKLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAK 235 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPN 291 +GD+ LI +LG ++ + + +LL GF N + K N +IK++Y + +N Sbjct: 236 RGDRKLILTLLGYDTKDQYYEDTKNLLDYGFNNFSLVKLYSKNDVIKEYYIDDKNNLSLL 295 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 E++ T K N E K Sbjct: 296 APEDIYKTFKNSEIENLSTDEIK 318 >gi|167749174|ref|ZP_02421301.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702] gi|167657852|gb|EDS01982.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702] Length = 389 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 14/281 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLS--------IAETNKL-PYYTLLDTNTGHVIAENYPDHPW 51 +++ ++ L+ + S ++E + + + + +TG V+ E+ Sbjct: 4 IKRITAVVTAFALAVVTQGASLTAFSEGDVSEADSITKAAIVTEVSTGQVLYEHNSHERL 63 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS+TKLM + +++ + T IT + A+ S G M+ + ++ + Sbjct: 64 PMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSV 123 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D A Sbjct: 124 VIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTA 183 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTFLGADGMKTGFTCASGFN 227 +LS +++ Y +F + ++ G++ NTN + + G G KTG T +G Sbjct: 184 LLS-AAVSEYDCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGTTDKAGCC 242 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + A +G+ L AV LG + R LL+ GF Sbjct: 243 LAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNHGFSGFE 283 >gi|52143878|ref|YP_082950.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] gi|51977347|gb|AAU18897.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L] Length = 374 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 20/322 (6%) Query: 14 SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 +++ P + A+ N L++ ++G V+ P AS+TK+MTA + Sbjct: 15 ASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAES-- 72 Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 + + +S A S K G + L++ + L+++S ND A IAE++ + Sbjct: 73 ---GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGS 129 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQ 189 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + F Sbjct: 130 IEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKIFG 188 Query: 190 IKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 K + YP N + A G KTGFT +G +V +A + LI V L A Sbjct: 189 TKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSA 248 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKEII 304 +L GF K + + + ++ +N V S V T++E Sbjct: 249 SSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKK 305 Query: 305 NYNTQMKEAKDKESHFIDFEKI 326 + +++ DK + +D K+ Sbjct: 306 SVVLKVEL--DKSAKLVDGVKV 325 >gi|320538339|ref|ZP_08038220.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis F0421] gi|320144838|gb|EFW36573.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis F0421] Length = 478 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 137/336 (40%), Gaps = 28/336 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 L + A L + A + + +TG ++ E D PASLTKL+ YV Sbjct: 69 LANLCPAALMRETKMQNPAPILAAQSVIVANADTGQLLYEYQADRKIPPASLTKLVAMYV 128 Query: 65 VFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 + + L + + + S +T+ L+ + V S ND A Sbjct: 129 AMQAIDSGEITLDQVVVPPRESWAENIPPGSSLLFLGPNQQLTVSELLRGMAVVSGNDAA 188 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 +A+A ++ + KFV+ M+ K LGL T F G+ + +YTTARD A + Sbjct: 189 IALAHAVSGSVPKFVERMSQAVKTLGLKHTVFTEPSGLSEE-NYTTARDFARFCLVYIRE 247 Query: 181 FPQYMH-YFQIKGLEIK---------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 +P+ + + ++ L P TN +G G DG+KTGF SGFNI Sbjct: 248 YPENLERFHALQELTYPLSHNVKNLISITQPATNTLLGKLKGCDGLKTGFIYESGFNIAL 307 Query: 231 SAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 + + ++AVILG A R R K +++ F+N I ++ Sbjct: 308 TCKRAGTRILAVILGGAGKTIAQGRAIREKDGEKIMNWAFHNFQTYPLI-------IEKK 360 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320 ++P I ++Q + + A++K + F Sbjct: 361 ALAQIPVIGAARQSSQASVYPIIVFGRFAQNKTTVF 396 >gi|312793461|ref|YP_004026384.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180601|gb|ADQ40771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 387 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 126/283 (44%), Gaps = 20/283 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP ++ T ++ E D AS Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V K I I A P S+ +KG + + + L L++ S Sbjct: 77 TKIMTAILVLENCDVNK-----EIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + K+FV MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 132 NDAAVALAIATAGDVKRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLA-A 190 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 191 YAMRNPIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 250 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 SA + D +I V+L A + + +L + N K + Sbjct: 251 SACRDDFRVICVVLNAPNM---WNDTRKILDYCYSNFKVVKLL 290 >gi|306832771|ref|ZP_07465907.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC 700338] gi|304425120|gb|EFM28250.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC 700338] Length = 416 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 141/363 (38%), Gaps = 30/363 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 M++ A+ + A+ + + ++ TG V+ E P AS+T Sbjct: 5 MKKIFAFFAIFLTFLAVGSKVSADDDFDVSAEHAIAVEATTGKVLYEKDATTPDGIASMT 64 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIV 113 K++T Y+V+ + E K T ++IS A + SN + T++ + +V Sbjct: 65 KILTVYLVYKAIDEGKISWDTKVSISDYAYNLTANSDASNVPMEARE-YTVEQLVNAAMV 123 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160 SAN A+A+AE + TE KFV M + G++ +NA G+ Sbjct: 124 ASANSAAIALAEQIGGTESKFVDMMKAQLEVWGITDATIVNASGLNNSYLGDNIYPGSSS 183 Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215 + +ARD+AI++ + T++P + + G N+ + G DG Sbjct: 184 TDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDG 243 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRK 271 +KTG T +G + VA++ + +I+V++ A D R + + LL N Sbjct: 244 LKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEMVT 303 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + + N+ S ++ + + D ++ ++ Sbjct: 304 LVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSADFSTNADGYDAPITKGQ 363 Query: 332 KIT 334 K+ Sbjct: 364 KVG 366 >gi|150396511|ref|YP_001326978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] gi|150028026|gb|ABR60143.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae WSM419] Length = 384 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 12/280 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ + A+ L+ I ++A+T K L+D TG V+ D P PASL Sbjct: 3 MKW---LAAVGFLAAIVSGQAVAQTPAFDTKAKQIYLVDAETGTVLFSRDEDAPVPPASL 59 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLL 111 KLM VVF L + + T +S++A S S + + + ++ Sbjct: 60 AKLMAMKVVFEALDKGELTPDTNFLVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGA 119 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 V+ AND + +AE + +E F + M ++ +GL F NA G+ G+ T R++ Sbjct: 120 TVQLANDACIILAEGMAGSEPAFAERMTKRAREIGLPVATFKNATGLPHPGNTITMRELV 179 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 L+ + P Y + E N N + +G DG+ TGF GF++ AS Sbjct: 180 ALARHLYEAHPNYYPLYSQPEFEWNKILQRNKNPLIAAKIGVDGLATGFAEGFGFSVAAS 239 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 +G++ + + G R + S +L R+ Sbjct: 240 MQRGERRVYLAMSGLESEKERIEESRRVLDWAMTAFEKRR 279 >gi|219854143|ref|YP_002471265.1| hypothetical protein CKR_0800 [Clostridium kluyveri NBRC 12016] gi|219567867|dbj|BAH05851.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 415 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 149/361 (41%), Gaps = 33/361 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + I ++ ++ T LP +LD TG V+ PD + PAS Sbjct: 9 MKKIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPAS 68 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + L +T+ KN + +G +T+ + L L++ S Sbjct: 69 TTKIMTALLTLE-----NTNLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLAS 123 Query: 116 ANDIAVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 AND A A+AE + + +KF MN + LG T+F+N G+ H T+A+D+A++ Sbjct: 124 ANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALIM 183 Query: 175 WRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAV-----GTFLGADGMKTGFTC 222 + P+Y I K + N N + + G +G KTG+T Sbjct: 184 KELCK-NPEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYTT 242 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIKDF 280 S + V++A + Q LI ++ ++ T S SL + GF N + K ++ + Sbjct: 243 QSLHSYVSAATRNGQRLIVALVHDKNK-TFFPDSISLFNFGFDNFSLVKLYSKGDLVTTY 301 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE------SHFIDFEKITLLKNKIT 334 + N+S + S+ K+ + + + ++ I+ I Sbjct: 302 NKNNISVPLTAASDFYYVKNKDDAAVPSFTLKNSNLSVKFFNTGEVVEEATISFKGKNIG 361 Query: 335 K 335 K Sbjct: 362 K 362 >gi|38142301|dbj|BAD00953.1| penicillin-binding protein 3 [Streptococcus pneumoniae] gi|38142327|dbj|BAD00966.1| penicillin-binding protein 3 [Streptococcus pneumoniae] Length = 413 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++TNTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVETNTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|228957844|ref|ZP_04119584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801760|gb|EEM48637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 363 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 136/323 (42%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K KK +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 GKMKK-----MVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 236 SASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 291 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK D K+ Sbjct: 292 ERKNVLLKVELDKSIKLEDGVKV 314 >gi|322388019|ref|ZP_08061626.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis ATCC 700779] gi|321141292|gb|EFX36790.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis ATCC 700779] Length = 413 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 144/363 (39%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL +I + + + + ++ N+G ++ E P AS++KL Sbjct: 1 MKKLFLTLITLISFGSATTVFAQDFDVAAKHAIAVEANSGKILYEKDATQPVEIASISKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ K L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 LTVYLVYEALEQGKITLSTPVEISDYPYQLTTNSEASNVPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKVAGSEKDFVDMMKAKLLEWGIQDATLVNTTGLNNETLGNNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+A+++ + +PQ + + G +TN + G DG+K Sbjct: 180 ENKMSAYDVAVVARNLILKYPQVLEITKKPSSTFAGMTIHSTNSMLDGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A +++T R +++LL N + + Sbjct: 240 TGNTDKAGASFVGTTVEKGMRIITVVLNADNQDTNPYARFTATSALLDYISSNFALQTIV 299 Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 Y E++ Q+ + + D H E T Sbjct: 300 KQGESYQDSKSPVYDGKQDTVTAVAKEDIKIVQRLGSRAESTVTYTPDATEHVAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|260587841|ref|ZP_05853754.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|331083843|ref|ZP_08332952.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542106|gb|EEX22675.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM 20583] gi|330403268|gb|EGG82828.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium 6_1_63FAA] Length = 411 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 73/364 (20%), Positives = 144/364 (39%), Gaps = 35/364 (9%) Query: 2 RQFL-VIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPAS 55 ++ L + +A + + FP L + ++ L+D +G V+ E + AS Sbjct: 7 KKILSLFLAFYISMSAFPVLVAGKGDEPENLYALSAALIDGESGRVLYEKNGEEKRPMAS 66 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MT + L S+ A+ P + G + + L L+++S Sbjct: 67 TTKIMTCILTLES-----GCLEEIAEASEKAARMPKVHLGASVGEKFYVKDLLYSLMLES 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------HYTTA 167 ND AV +AE + + + F + MN ++ +G T F+ +G+ H TTA Sbjct: 122 HNDSAVILAEHVGGSVEGFAEKMNEKAREIGCEDTWFITPNGLDAKEEREGEEKVHETTA 181 Query: 168 RDMAILSWRIKTDFP---QYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKT 218 ++A + P +++ Q + N N + GA KT Sbjct: 182 ENLAQIMRYCVCLSPAREEFLKITQTPSYRFSDADGKREFSCQNHNAFLSMMEGAISGKT 241 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKT----DRK 271 GFT +G+ V + + ++LI +LG N + + L+ G + D Sbjct: 242 GFTAQAGYCYVGALQRDGKTLIVALLGCGWPNNKGYKWSDTRKLMEYGLNEYSLHSFDEI 301 Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 + + K+ +N N+ + + ++ +++ +KE ++ E + +K+T Sbjct: 302 EFSKCPKEIPVKNAKNKELDKNSKISLVREKGEEKKILLKEGEEIEVSYHGKKKLTAPVK 361 Query: 332 KITK 335 K K Sbjct: 362 KGEK 365 >gi|194396776|ref|YP_002037508.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae G54] gi|194356443|gb|ACF54891.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae G54] Length = 413 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 151/363 (41%), Gaps = 34/363 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYI-----IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 K Q + V ++ E++ ++ + ++ D ++ E T Sbjct: 300 QQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGT 359 Query: 328 LLK 330 ++ Sbjct: 360 VVG 362 >gi|158320612|ref|YP_001513119.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] gi|158140811|gb|ABW19123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii OhILAs] Length = 371 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 17/275 (6%) Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR + I + M+ P + + ++D TG ++ E AS Sbjct: 1 MRERVFCFIIIFMMLMANPSYGQEKMKNIQTGGKSAIVMDVETGRILYEKNMHLKLPMAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MTA + + +K + I++NA S+ + + + + L+++S Sbjct: 61 TTKIMTALLAIENIPLEK-----RVKINQNAQGIEGSSIYLRANEEVKAIDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A AIA + + + F MN + +G T+F N HG+ HYTTA D+A+++ Sbjct: 116 GNDAAAAIAYEVSGSIEAFADLMNERANKIGAKNTNFTNPHGLHHENHYTTAYDLALITR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + K +Y N N + G DG+KTG+T SG +V+SA Sbjct: 176 EALK-NSVFKEVVKTKFWTADRNEYKHFANKNIGLEICEGGDGVKTGYTTRSGRCLVSSA 234 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + I++ L D + LL GF Sbjct: 235 SREGMQFISITL---DDYNWFDTNKKLLDEGFKRY 266 >gi|228900148|ref|ZP_04064381.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] gi|228859554|gb|EEN03981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222] Length = 362 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 61 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNESFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 235 SASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 290 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK D K+ Sbjct: 291 ERKNVLLKVELDKSITLEDGVKV 313 >gi|240850634|ref|YP_002972034.1| penicillin-binding protein [Bartonella grahamii as4aup] gi|240267757|gb|ACS51345.1| penicillin-binding protein [Bartonella grahamii as4aup] Length = 387 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 13/349 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTK 58 M L I+ F AE ++ LLD +TG ++ E D P+ PASL K Sbjct: 1 MYTTLRILLTLWGILAFDTWGRAEGFQISASQLLLLDDDTGTILYEKQSDIPFFPASLAK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 LMT VVF LKE T +S+NA + K + +++ + L+ LI+ Sbjct: 61 LMTVEVVFHHLKEGLLKSTQKFKVSENAWRKGGAPSGTTTMFAKIKTEISVSDLLRGLII 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 + ND A+ +AE + E F + MN +K +GLS +HF+NA G+ + G + T RDM IL Sbjct: 121 MNGNDAAIILAEGISGHEAHFAKLMNQRAKIVGLSQSHFVNATGLPEEGQFVTVRDMIIL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + I ++P Y ++ N N + +G +G G++ GF++VA+ Sbjct: 181 ARHIVQEYPDYYALYREPHFTWNNIFQRNKNPLISKEIGVEGFGFGYSGKEGFSMVATIS 240 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVP 290 + + L I G D K +L G F KT K + + N VP Sbjct: 241 KNHRRLFLAINGLQDGKKYTKEIERILQWGMTAFDLKTIFTKEEAVGRASVYGGTQNFVP 300 Query: 291 NISEEVCT---TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 I ++ + + ++ +N ++K ++ + + + +++ KK Sbjct: 301 LIVKKPISFMLSNEKKVNVKAKIKYHGPLKAPIVSGQSVGVIQILEDKK 349 >gi|160931610|ref|ZP_02079005.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753] gi|156869481|gb|EDO62853.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753] Length = 381 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 117/274 (42%), Gaps = 18/274 (6%) Query: 3 QFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++A A + + A + L+ + V+ E + AS TK Sbjct: 10 KLCALLAAAGILTSAGTPAAANGGEPSVSAKAAVLMTADNSTVLYEKAAEEKLPMASTTK 69 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + + + + I+ S+ K G+ +TL + +++ S ND Sbjct: 70 IMTALLTLEAAQAE----DRQVKITDEMVRVEGSSMGLKPGNVVTLTALAQGMLLCSGND 125 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178 A A A ++ + ++F + MN +K +G+ T+F+ G+ HYTTA DMA+L Sbjct: 126 AANAAAIAIAGSTEEFAKLMNQRAKQIGMKNTNFVTPSGLDDENHYTTAYDMALLG-ACA 184 Query: 179 TDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + ++ K +++ + N N + + G G+KTGFT SG +V+ A Sbjct: 185 MENQRFREIASQKSMQVQFVEPDMKYTFGNHNRLLTAYEGCIGVKTGFTKKSGRCLVSCA 244 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 + L+AV L A D ++L GF Sbjct: 245 ERDGVRLVAVTLNAPDD---WNDHKAMLDYGFSK 275 >gi|167772310|ref|ZP_02444363.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM 17241] gi|167665413|gb|EDS09543.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM 17241] Length = 384 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 15/246 (6%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 K +LD TG V+ + AS TK+M+ + ++ + T+ Sbjct: 44 DTKAKAAVVLDAATGRVLFAKNANARLPMASTTKIMSTLLTLE--QDGQ---DEWFTVDP 98 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 +A S+ + G +TL +++ S ND A A A + +++ F + MN + Sbjct: 99 DAIRVEGSSMGLRVGDRVTLSALAYGMMLPSGNDAANAAAVRIAGSKEAFARMMNERAAE 158 Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------GK 198 LG+ +HF+ G+ + HY++A DMA+L+ P++ K ++ + Sbjct: 159 LGMEDSHFVTPSGLDDNAHYSSAYDMALLTREAL-SNPRFAEICSQKSAKVCFGNPPADR 217 Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258 + N N + + A G+KTGFT A+G +V+ A +G LI V L D Sbjct: 218 WFSNHNRLLKLYPDAAGVKTGFTDAAGRCLVSYAQRGGVRLIVVTLNCPDD---WNEHIK 274 Query: 259 LLSMGF 264 L F Sbjct: 275 LYEHYF 280 >gi|307704894|ref|ZP_07641785.1| penicillin-binding protein 3 [Streptococcus mitis SK597] gi|307621508|gb|EFO00554.1| penicillin-binding protein 3 [Streptococcus mitis SK597] Length = 413 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 33/354 (9%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 LTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEA-RNYTVEELLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I VIL A + +R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVILNADHQDNNPYSRFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 Q+ V + E+ T Y ++ ++ S + F + Sbjct: 300 QQGDA---YQDSKVPVQDGKEDTVTAVAPEDIYL--IERGGNQSSQSVQFTPDS 348 >gi|295706466|ref|YP_003599541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] gi|294804125|gb|ADF41191.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319] Length = 382 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 30/349 (8%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + I + LS S A + L++ +G V+ D AS Sbjct: 1 MKRSKKSIIYLFIVLLCLSGWPSISSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + K K +T+S +A S+ +G + L + + L+++S Sbjct: 61 ITKIMTAILAIESGKINK-----TVTVSHSAVGVEGSSVYLIEGEKIKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE++ +E FV MN ++ +G++ T F N HG+ H H +TA DMA+L Sbjct: 116 GNDAAVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLM 175 Query: 175 WRIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGT-FLGADGMKTGFTCASGFN 227 + + K +K + + N N + T + G KTG+T + Sbjct: 176 RYAMNNKI-FKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRT 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQ 282 +V +A + LIAV + A D S+ F + ++ I FY+ Sbjct: 235 LVTTATKDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLASKGELADIKNSFYK 291 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 L + + T+KE + + + K+ E ++ Sbjct: 292 DQLYIKRNVV---YPLTKKEQSSVEVKTTLIQPKKQWKETGEVPNVVGK 337 >gi|237749357|ref|ZP_04579837.1| penicillin-binding protein 6. serine peptidase. merops family s11 [Oxalobacter formigenes OXCC13] gi|229380719|gb|EEO30810.1| penicillin-binding protein 6. serine peptidase. merops family s11 [Oxalobacter formigenes OXCC13] Length = 397 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 147/339 (43%), Gaps = 24/339 (7%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN---PASLTKLMTAYVVFSFLKE 71 N+ A T + L+D + V+A + PA +LMTAY+VF +K+ Sbjct: 35 NVHAAGVAAPTLTSRSWLLIDVVSNQVLASSNSQERIRAGTPA---RLMTAYLVFGAIKD 91 Query: 72 KKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 K L +++S A E + GS++T+ L LIV+ + D A+ +A ++ Sbjct: 92 GKLNLDKTVSVSDEIGAMESGGPRMFLQPGSSVTIQQLLDGLIVQGSEDAALTLALAVSG 151 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 EK FV MN + LG+ +T+F + + Y+T D+++L+ + D+P Y F Sbjct: 152 DEKSFVDLMNREAVRLGMKSTNFTHPYETADKDSYSTPNDLSVLAVNLMRDYPDYYSGFS 211 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF--NIVASAIQG----DQSLIAVI 243 + N N + DG+ ++G ++V SA + ++ +++V+ Sbjct: 212 TREFTYNKITQRNPNRLLWVDPTVDGL----VASAGVRDSMVVSARRDSILGERRMLSVV 267 Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVP---NISEEVC 297 +GA+ R + S LL+ GF N + K + + S +V N+ V Sbjct: 268 VGAVSDQARAQESLKLLNWGFQNFDTIRLYEKNQVVASPEVWKGSSGDVDIGFNVDTYVS 327 Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + EI T ++ + + ++ +LK + K Sbjct: 328 VPKGEISRLKTVLERNDPLIAPINEGSQVGVLKILVGDK 366 >gi|312876024|ref|ZP_07736013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] gi|311797222|gb|EFR13562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor lactoaceticus 6A] Length = 387 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 20/283 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASL 56 R F+++ A+ + + E LP ++ T ++ E D AS Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MTA +V K I I A P S+ +KG + + + L L++ S Sbjct: 77 TKIMTAILVLENCDVNK-----EIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND AVA+A + +FV MN +K LGLS T F + HG+ Q HYTTA D+A L+ Sbjct: 132 NDAAVALAIATAGDVIRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLA-A 190 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVA 230 P + + E+ P N N + + GA+G+KTGFT +G +V Sbjct: 191 YAMRNPIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVT 250 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 SA + D +I V+L A D + +L + N K + Sbjct: 251 SACRDDFRVICVVLNAPDM---WNDTRKILDYCYSNFKVIKLL 290 >gi|319651403|ref|ZP_08005532.1| DacB protein [Bacillus sp. 2_A_57_CT2] gi|317396934|gb|EFV77643.1| DacB protein [Bacillus sp. 2_A_57_CT2] Length = 374 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 75/323 (23%), Positives = 141/323 (43%), Gaps = 24/323 (7%) Query: 6 VIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +++A A++ P + A + L++ ++G ++ + + AS+TK+MTA + Sbjct: 1 MVLATALMMMNIPQKAEASVSVSARSAILMEQDSGRILYQKDANEVRRIASITKIMTAIL 60 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + + +S A S+ K G + L++ + L+++S ND AVAIA Sbjct: 61 AIES-----GKMDDMVKVSDRAVRAEGSSIYLKAGEKIKLEDLVYGLMLRSGNDSAVAIA 115 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQ 183 E + + + F MN ++ +G+ THF N HG+ H HY+TA DMA+L+ Sbjct: 116 EHVGGSLEGFGFLMNKKAEEIGMKNTHFANPHGLDDHEDHYSTAYDMALLTRYAMN-NET 174 Query: 184 YMHYFQIKGL------EIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGD 236 Y K E + + N N + + G KTG+T + +V +A +G Sbjct: 175 YQKIAGTKVHRAPNPNESWDRVWKNKNRLLTELYEYCTGGKTGYTKRAKRTLVTTASKGS 234 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----DRKKINYIIKDFYQQNLSNEVPN 291 +LIAV L D ++ F I+ I +++Y+ + + P Sbjct: 235 LNLIAVTLNGPDD---WNDHINMYETAFKTYDIVEVLPEGIIDDIDEEYYKGKVYLKHPY 291 Query: 292 ISEEVCTTQKEIINYNTQMKEAK 314 V +K+ N ++++ + Sbjct: 292 -HYPVLKGEKDKFKINIELQKPE 313 >gi|228964541|ref|ZP_04125651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795141|gb|EEM42637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar sotto str. T04001] Length = 362 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 61 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIDGFVYLMNEKAKKIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNESFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 235 SASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 290 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK D K+ Sbjct: 291 ERKNVLLKVELDKSITLEDGVKV 313 >gi|320547987|ref|ZP_08042268.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus ATCC 9812] gi|320447333|gb|EFW88095.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus ATCC 9812] Length = 419 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 126/326 (38%), Gaps = 32/326 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ + +A+ + + + ++ TG V+ E P AS+TK++ Sbjct: 11 MKKVIAALAILLAFIGSSVYADDFDVAAKHAIAVEATTGKVLYEKDATTPAGIASMTKIL 70 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+ + + T + IS A + SN + T++ + +V SA Sbjct: 71 TVYLTYKEIDNGNLSWDTKVPISDYAYDLTANSDASNVPMEAHE-YTVEQLVNAAMVASA 129 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162 N A+A+AE + +E FV M G++ +NA G+ Sbjct: 130 NSAAIALAEQIGGSESNFVDMMKAQLNEWGITDAKLVNASGLNNSYLSDNIYPESSSTDE 189 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +ARD+AI++ + T++P + + G N+ + G DG+KT Sbjct: 190 NMLSARDIAIIARHLITEYPDVLKISSQTTADFDGSTMNTYNYMLKDMPYERDGVDGLKT 249 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKIN 274 G T +G + VA++ + +I+V++ A R + + LL N I Sbjct: 250 GTTELAGASFVATSTENGMRIISVVMNADGWEENDFARFEATNELLDYVKSNYEITTIIE 309 Query: 275 YI-----IKDFYQQNLSNEVPNISEE 295 K + VP ++ + Sbjct: 310 AGQSYKNSKAKVKDGKEKTVPVVAAQ 335 >gi|229029247|ref|ZP_04185338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228732060|gb|EEL82951.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 366 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 29/345 (8%) Query: 8 IAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 + + M +++ P + A+ N L++ +G V+ AS+TK+MTA + Sbjct: 1 MLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALL 60 Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 + +++S A S K G + L++ + L+++S ND A IA Sbjct: 61 AAES-----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIA 115 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQ 183 E++ + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + Sbjct: 116 ENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNET 174 Query: 184 YMHYFQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + F K + YP N + A G KTGFT +G +V +A + LI Sbjct: 175 FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLI 234 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN--------EVPN 291 V L A +L GF + + + ++ +N VP Sbjct: 235 VVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPL 291 Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 +E +K+++ K AK K+ + +I + K+ ++ Sbjct: 292 TEQE----RKDVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 332 >gi|205373775|ref|ZP_03226577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus coahuilensis m4-4] Length = 318 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 126/302 (41%), Gaps = 26/302 (8%) Query: 2 RQFLVIIAMAMLSNIFPF----LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 R+++ + L F + A L+D TG V+ E + AS+T Sbjct: 4 RKWMAYLLTVFLLGSVCFRPLDVQAAPGVSAHSAILMDQETGRVLYEKNAEQQMKIASIT 63 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K+MTA V L +T+S NA+ S+ G M L++ L L+++S N Sbjct: 64 KIMTAIVAIES-----DDLQDTVTVSSNAAGTEGSSLYLVAGQKMKLEDLLYGLMLRSGN 118 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWR 176 D AVAIAE + + + FV MN ++ +G+ T+F N HG+ H +T+ DMA+L + Sbjct: 119 DSAVAIAEHVGGSLEGFVYLMNQKAEEIGMENTNFDNPHGLDDSDTHLSTSYDMALL-MK 177 Query: 177 IKTDFPQYMHYFQI---KGLEIKGKK---YPNTNWAVGT-FLGADGMKTGFTCASGFNIV 229 + + K G + N N + + G KTG+T + +V Sbjct: 178 YSMNNETFQEISSTEVHKAPNPNGDWDYSWHNKNRLLTQLYEYCTGGKTGYTKLAKRTLV 237 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQQN 284 +A + + LIAV L D S+ GF + ++ I +Y+ Sbjct: 238 TTAEKDGEKLIAVTLNGPDD---WNDHISMYEYGFDQFDYYVLAKKGSLSEIKDSYYKGK 294 Query: 285 LS 286 + Sbjct: 295 VY 296 >gi|229058203|ref|ZP_04196591.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] gi|228720067|gb|EEL71651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603] Length = 362 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 20/324 (6%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVIPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K K+ +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKE 302 A +L GF K + I + ++ +N V S V T++E Sbjct: 235 SASSD---WDDHMNLFDKGFERYKQAKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEE 291 Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326 + +++ DK D KI Sbjct: 292 RKSVLLKVEL--DKSEKLTDGVKI 313 >gi|228920278|ref|ZP_04083626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839477|gb|EEM84770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 363 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 134/323 (41%), Gaps = 18/323 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAQS 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A +G LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEVPNISEEVCTTQKEI 303 A +L GF K + I + ++ +N V E Sbjct: 236 SASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHV-YTKNSFSVPLTEE 291 Query: 304 INYNTQMKEAKDKESHFIDFEKI 326 N +K DK D K+ Sbjct: 292 ERKNVLLKVELDKSIKLEDGVKV 314 >gi|229172207|ref|ZP_04299771.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] gi|228611195|gb|EEK68453.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3] Length = 362 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 144/341 (42%), Gaps = 29/341 (8%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVIPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN--------EVPNISEE 295 A +L GF + + + ++ +N VP +E Sbjct: 235 SASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPLTEQE 291 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 +K ++ K AK K+ + +I + K+ ++ Sbjct: 292 ----RKNVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 328 >gi|229084940|ref|ZP_04217192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44] gi|228698256|gb|EEL50989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44] Length = 340 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 12/253 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 ++ ++D + G V+ +N + PAS++K+MTAY++ + K + IS Sbjct: 84 PVVEVKAAMIIDASDGQVMYKNNEEEQLAPASMSKMMTAYILLENIHNGKVHWDDQVKIS 143 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +++ + + G +T+ + L+++SAN+ AVA+AE + KTE+ F Q MN T+K Sbjct: 144 AKSAQAEGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHMAKTEQDFAQVMNQTAK 203 Query: 144 NLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKG 197 L LS AT F NA G+ + T D+A L++R+ D+P+ + ++ + Sbjct: 204 QLELSEATKFANASGLQEADGSETKMTVADVAKLAYRLVKDYPEILDVTHLRQSQLAFNN 263 Query: 198 KKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +TN + G DG+KTGFT ++G+ +A QGD+ ++ V++G Sbjct: 264 ITVTSTNEMLNPANQELYMEGMDGLKTGFTDSAGYCFTGTAKQGDKRIVTVVMGTKSEMK 323 Query: 252 RNKVSASLLSMGF 264 R + L+S GF Sbjct: 324 RFTETHKLMSYGF 336 >gi|317128528|ref|YP_004094810.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] gi|315473476|gb|ADU30079.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] Length = 377 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 25/297 (8%) Query: 4 FLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 F IIA ++S +F ++ + L++ +G V+ E AS+TK Sbjct: 2 FKKIIAFILISTLFTDITASAATYPGNVSARGAILMEQESGRVLYEKEAHTQMRIASITK 61 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA + + L +T+S NA S+ + L + + L+++S ND Sbjct: 62 IMTAILAIESGE-----LDEWVTVSSNAEGTEGSSIYLVAEEEIQLRDLVYGLMLRSGND 116 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRI 177 AVAIAE + + + FV MN ++ LG++ T F N HG+ H HY+TA DMA+L+ R Sbjct: 117 SAVAIAEHVGGSLEGFVYMMNEKAQELGMTRTVFSNPHGLDDHEEHYSTAYDMALLT-RY 175 Query: 178 KTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGT-FLGADGMKTGFTCASGFNIVAS 231 D +Y K K K + N N + + + G KTG+T + +V++ Sbjct: 176 AMDNEEYKEIAGTKSYRSKNKDDHYRVFNNKNRLLTQLYRNSTGGKTGYTKRAKRTLVST 235 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 A + D LIAV + A D S+ F + I+ D N+++E Sbjct: 236 AEKEDVELIAVTINAPDD---WNDHISMFEWAFSTFN----LTTIVSDGLLTNINDE 285 >gi|210623818|ref|ZP_03294067.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275] gi|210153313|gb|EEA84319.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275] Length = 453 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/298 (27%), Positives = 135/298 (45%), Gaps = 36/298 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52 M++ ++ +L F SI + L+D TG V+ + + Sbjct: 1 MKKISSVLIAFLLVFASVFTSIGSVFADQKVVNLEAKSAVLMDYETGKVLYQKNGNVKIY 60 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 PAS TK TAY+V + + L ITI N PS+ KKG T T+ L L+ Sbjct: 61 PASTTKAWTAYLVIKHVPD----LNEKITIG-NLPYIEPSSMFLKKGETFTVKELLTALM 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V S ND+A +AE + + KF MN ++ +G + THF N +G+ HYTTA+DMA+ Sbjct: 116 VHSCNDVAYVLAEHVSGSIPKFADLMNKEAEAIGCTGTHFNNPNGLPDPNHYTTAKDMAL 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNWAVGT--------------FL 211 ++ + +D + K ++ K K Y N+N + + + Sbjct: 176 IARKCMSDSV-FREIVATKSVKFKPTKQYPHERVYTNSNKFLTSHQKITYKGKRIDIKYD 234 Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 DG+KTGFT A+G ++ SA++ +Q +I+ + + + S +L+ F N Sbjct: 235 IVDGIKTGFTNAAGKCLLTSAVKDNQRIISAVFNS-TNDGIYVDSRTLIDYVFENYDS 291 >gi|229010872|ref|ZP_04168069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|229132375|ref|ZP_04261229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228651081|gb|EEL07062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228750546|gb|EEM00375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 362 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 20/324 (6%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K K+ +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKE 302 A +L GF K + + + ++ +N V S V T++E Sbjct: 235 SASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 291 Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326 + +++ DK + D KI Sbjct: 292 RKSVLLKVEL--DKSAKLTDGVKI 313 >gi|134299463|ref|YP_001112959.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] gi|134052163|gb|ABO50134.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens MI-1] Length = 388 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 38/338 (11%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 K +L++ +G V E D PASLTK+MTA + K L +T+ Sbjct: 32 PPKVKASAASLMEVESGKVYFEKDGDKRREPASLTKVMTAILAIE-----KGNLKDVVTV 86 Query: 83 SKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 + A+ + G + L++ LK ++ SAND VAI E + + +FV+ MN Sbjct: 87 QQRAARVSMGQDIGLNIGDRLYLEDLLKAALMYSANDSTVAIGEHIGGSHDQFVKMMNEK 146 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILS----------------WRIKTDFPQYM 185 + LGL THF N +G HYTTA D+A L+ T P+ Sbjct: 147 AVALGLKNTHFANTNGFHHPNHYTTANDLAKLTCYALQNKTFAEFVRTKEATITWLPKET 206 Query: 186 HYFQIKGL---EIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 K +K + NTN + + F G +G+KTG T +G ++ASA + + L+ Sbjct: 207 AVKTGKKSEAETVKQRVLRNTNRLLRSDFEGINGVKTGTTPRAGNCLIASATREGRQLVV 266 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD------FYQQNLSNEVPNISEE 295 VIL + N R + LL GF + K + + KD + + N++ ++ + Sbjct: 267 VILHS---NNRWNDATRLLEYGFN---EVKPVVLVEKDEVLSTMPVLEGVENKITLVTAK 320 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333 ++ + ++ K + ++ T L I Sbjct: 321 KLEVYVPSVDMDKIERKIHLKPTPMAPVKQGTKLGQAI 358 >gi|163939383|ref|YP_001644267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163861580|gb|ABY42639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 374 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 20/324 (6%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 13 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 72 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K K+ +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 73 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 127 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 128 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 186 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 187 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 246 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKE 302 A +L GF K + + + ++ +N V S V T++E Sbjct: 247 SASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 303 Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326 + +++ DK + D KI Sbjct: 304 RKSVLLKVEL--DKSAKLTDGVKI 325 >gi|159184785|ref|NP_354505.2| penicillin binding protein [Agrobacterium tumefaciens str. C58] gi|159140073|gb|AAK87290.2| penicillin binding protein [Agrobacterium tumefaciens str. C58] Length = 390 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 10/262 (3%) Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 S PF++ AE ++D TG V+ D + PASL KLMT VV L + + Sbjct: 28 SQTAPFIAKAE-----QAYMIDAETGTVLLSQNEDQSFPPASLAKLMTVEVVLDALSKGQ 82 Query: 74 AMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 T +S+ A S S++ +++ L +IV++AND + +AE + Sbjct: 83 VTPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVGINDLLTGIIVQNANDGCIIVAEGMA 142 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188 ++ F + M + LG++ + F N+ G+ G+ TTARDM L+ + +P F Sbjct: 143 GSDAAFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARDMVRLAQHLHDTYPDRYALF 202 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 E N N + G DG+ GF SGF V SA + + + + G D Sbjct: 203 TKPDFEWNRIFQRNKNTLLMPGSGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALAGIAD 262 Query: 249 RNTRNKVSASLLSMGFYNKTDR 270 TR + + ++ G R Sbjct: 263 DKTRQEEARRVVDWGLTAFEKR 284 >gi|288553434|ref|YP_003425369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4] gi|288544594|gb|ADC48477.1| D-alanyl-D-alanine carboxypeptidase S11 serine type [Bacillus pseudofirmus OF4] Length = 374 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 15/276 (5%) Query: 2 RQFLVIIAMAML-SNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 + ++++ ++ L + P + A + L+D TG + PAS+T Sbjct: 10 KSIMLLLCVSFLIAQAVPQQAKASDTPVIESETAVLIDGATGETLWGKDSTKRMYPASVT 69 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 K++TA V + L + +S+N + + G ++L ++ L++ S N Sbjct: 70 KIITAIVAIE-----EGNLEEKVAVSENVMDVIGTRVYLLPGEEVSLLKLVQGLMINSGN 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTS-KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 D +AIAE + +E+ F + MN + +G+ +HF N HG+ HYTTA+D+A+++ + Sbjct: 125 DAGLAIAEHMDGSEEAFAKRMNRFVEEEIGVKDSHFTNPHGLFDENHYTTAKDLAMIT-K 183 Query: 177 IKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + Q K +E G N + + + G G+K GF SGF + + Sbjct: 184 YAMENEVFKEIAQTKEMEWIGEGWETTIYNHHRMLWDYDGVTGVKNGFVQRSGFTLSTAV 243 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + D LIAV L A + +A+L GF Sbjct: 244 ERDDMELIAVTLNAPAAKVSYQDTAALFDYGFTRYE 279 >gi|229121111|ref|ZP_04250348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] gi|229183764|ref|ZP_04310981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228599613|gb|EEK57216.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1] gi|228662230|gb|EEL17833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201] Length = 357 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 138/319 (43%), Gaps = 20/319 (6%) Query: 17 FPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 P + A+ N L++ ++G V+ P AS+TK+MTA + Sbjct: 1 MPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAES----- 55 Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133 + + +S A S K G + L++ + L+++S ND A IAE++ + + Sbjct: 56 GKMKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEG 115 Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKG 192 FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + F K Sbjct: 116 FVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKIFGTKT 174 Query: 193 LEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + YP N + A G KTGFT +G +V +A + LI V L A Sbjct: 175 YKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD 234 Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKEIINYN 307 +L GF K + + + ++ +N V S V T++E + Sbjct: 235 ---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKSVV 291 Query: 308 TQMKEAKDKESHFIDFEKI 326 +++ DK + +D K+ Sbjct: 292 LKVEL--DKSAKLVDGVKV 308 >gi|157692820|ref|YP_001487282.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] gi|157681578|gb|ABV62722.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus SAFR-032] Length = 385 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 36/340 (10%) Query: 18 PFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 PF S A+ + L+D +G V+ AS+TK+MTA + Sbjct: 21 PFSSHAKADVSLSVSARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIES---- 76 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + + +SK A + S+ K+G ++L++ L+++S ND AVAIAE + + + Sbjct: 77 -GKMKDTVKVSKRAIQAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLE 135 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F+ MN + LG+ T+F N HG+ H HY++A DMAIL+ R + QY Sbjct: 136 GFIFMMNQKASELGMENTNFQNPHGLDDHKNHYSSAYDMAILT-RYAMEHKQYQKIAGTT 194 Query: 192 GLEIKGKK--YPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + K + + N N + G + + G KTG+T + +V++A +G+ +LIAV + A D Sbjct: 195 FYKAKTMEGYWKNKNKLLTGLYQYSTGGKTGYTKLAKRTLVSTAAKGNAALIAVTINAPD 254 Query: 249 RNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNL-------------SNEVP 290 K S+ F + ++ ++ + FY++ ++ Sbjct: 255 D---WKDHISMFEYAFDHYKTYVLAEKGRLASLKGTFYEKKAFIKRDVDYFLNEDEKKLV 311 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 I E+ T QK+ + + K + +D + I + Sbjct: 312 EIETEMLTPQKKWAKNAEAIPDVVGKMTFLLDGQVIEQVP 351 >gi|58698116|ref|ZP_00373039.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535362|gb|EAL59438.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Drosophila ananassae] Length = 310 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT Y+ F +LK + +S+ A E S+ K+G +T+ L+ + + S ND Sbjct: 1 MTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDA 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 + +AE + +E+ FV MN ++NL L+ +HF+N+ G H+ +A+D+ +L+ RI T Sbjct: 61 CITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFT 120 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP+Y F + L N N + +G DG+KTG+T A G+ IVASA + D+ + Sbjct: 121 DFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRI 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292 AV+ G R + + L+ + +K F Q ++ EV + Sbjct: 181 FAVVNGLNTEKERIEEAKRLIQYSLNHFNTKKI-------FAQDSVVEEVNVL 226 >gi|228951945|ref|ZP_04114043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069121|ref|ZP_04202413.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|229078751|ref|ZP_04211305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|229177976|ref|ZP_04305348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228605464|gb|EEK62913.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W] gi|228704624|gb|EEL57056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2] gi|228714066|gb|EEL65949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185] gi|228807868|gb|EEM54389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 363 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 16/271 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 A +L GF K + Sbjct: 236 SASSD---WDDHMNLFDKGFERFKQTKVLGQ 263 >gi|223983850|ref|ZP_03634014.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM 12042] gi|223964174|gb|EEF68522.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM 12042] Length = 412 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 28/305 (9%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ F + A+A+ N+ P LSI +L L+D ++G V+ E D PAS Sbjct: 1 MKKWFKGLAALALAINMMPALSIKAEEELNLDGESAVLIDADSGAVLYEKNADDRHYPAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLI 112 +TK+MT Y+ S + +T + A + S+ G ++L +A I Sbjct: 61 ITKIMTVYLALS-----QGNPDQMLTATDTAIDNIDRKSSHIWLDYGEELSLKDACYAAI 115 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND + +AE++ ++++F MN + G THF NAHG+ HYTTA DMA+ Sbjct: 116 MASANDASNVLAEAIGGSQEEFAGLMNEAAAAAGAKNTHFANAHGLPDEDHYTTAYDMAM 175 Query: 173 LSWRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVGT----FLGADGMKTGFT 221 ++ R+ + F E+ + + + N + + A G K G+T Sbjct: 176 IT-RMAMKNAAFAEVFGTVKYEMQPTNKQKDVRYFASGNDMLKKGEFFYEYATGGKIGWT 234 Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281 +G+ IV +A + +LIAV+L ++N R + +L GF N K+I F Sbjct: 235 EDAGYTIVTTASKDGVNLIAVVLKNSNKNARYTDTRALFDYGFANY---KQITIPASSFE 291 Query: 282 QQNLS 286 ++ + Sbjct: 292 EKTIE 296 >gi|228990988|ref|ZP_04150951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228997075|ref|ZP_04156706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock3-17] gi|229004731|ref|ZP_04162467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock1-4] gi|228756524|gb|EEM05833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock1-4] gi|228762700|gb|EEM11616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides Rock3-17] gi|228768768|gb|EEM17368.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 343 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 12/253 (4%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + ++D + G V+ +N + PAS++K+MTAY++ + + K + IS Sbjct: 87 PVVEAKAAMIIDASNGQVMYKNNEEELLAPASMSKMMTAYILLENIHKGKVHWEDQVKIS 146 Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143 +++ + + G +T+ + L+++SAN+ AVA+AE + KTE+ F MN T+K Sbjct: 147 AKSAQAEGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHIAKTEQDFAHLMNQTAK 206 Query: 144 NLGLS-ATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKG 197 L LS AT F+NA G+ + T D+A L++ + TD+P+ + ++ + K Sbjct: 207 QLELSEATKFVNASGLQEPDGSETKMTVADVAKLAYHLVTDYPEILDVTHLRQSQLAFKS 266 Query: 198 KKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 +TN + G DG+KTGFT ++G+ +A QGD+ L+ V++G + Sbjct: 267 TMVTSTNEMLNPANQGLYLEGMDGLKTGFTDSAGYCFTGTAKQGDKRLVTVVMGTKSQMK 326 Query: 252 RNKVSASLLSMGF 264 R + L+S GF Sbjct: 327 RFTETHKLMSYGF 339 >gi|317126753|ref|YP_004093035.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] gi|315471701|gb|ADU28304.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus cellulosilyticus DSM 2522] Length = 479 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 130/325 (40%), Gaps = 60/325 (18%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++ ++L+ + + E++ L L+D +TG ++ D P PAS+ K+M+ Y Sbjct: 12 LIIFTFTSLLTGVTTTKADYESDLLETGILVDADTGKILYGRNIDQPLPPASMVKMMSIY 71 Query: 64 VVFSFLKEKKAMLTTPITISKN-----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 ++ +++ + I+ + + SN +K T+ + + + SAN Sbjct: 72 LIHESIEKGDISWDDIVYINDYLVNDLSKQINLSNVPLRKDEDYTVRELYESIAIYSANA 131 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSA------------------------THFMN 154 +A+AE + +E FV+ MN K LG+ F+N Sbjct: 132 SMMAVAEHIAGSEGSFVEMMNEKGKELGMGNLLREEGEKHGISNLNEIAEANLGDFQFVN 191 Query: 155 AHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199 + G+ ++ +AR A L++ + D+P+ + I + K Sbjct: 192 STGLPNSVLLENRPSGTEIDDDNFMSARATATLAYHLLNDYPEVLETASIPEMTFKEGTE 251 Query: 200 ----YPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---- 247 PN N + + ADG+KTG T A+G +A++ + LI V++G Sbjct: 252 DAIVMPNWNKMLEGRGHFYEYADGLKTGTTTAAGACFTGTAVKNGRRLITVVMGLPRPLT 311 Query: 248 ----DRNTRNKVSASLLSMGFYNKT 268 D R + L+ GF N + Sbjct: 312 SRPEDDLARYDETRKLMEYGFNNFS 336 >gi|306825360|ref|ZP_07458700.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432298|gb|EFM35274.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 411 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 30/342 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + +S E + ++ TG ++ E + P AS+TKL Sbjct: 1 MKKIILSFITLFVFGTVSTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGVDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SLL N + + Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDSNPYARFTATSSLLDYVSANFALKTVV 299 Query: 274 --NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313 KD L + ++ + + ++ A Sbjct: 300 QKGETYKDSKVTVLDGKEDKVAAIAKSDIAIVQRVGSETTSA 341 >gi|229189650|ref|ZP_04316665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] gi|228593914|gb|EEK51718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876] Length = 363 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 16/271 (5%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 2 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 61 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAES+ Sbjct: 62 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 116 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 117 GSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 175 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 176 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 235 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 A +L GF K + Sbjct: 236 SASSD---WDDHMNLFDKGFERFKQTKVLGQ 263 >gi|291540307|emb|CBL13418.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4] Length = 299 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 114/281 (40%), Gaps = 24/281 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++++ +M ++ E ++ P +++ +TG V+ + PAS+TK+MT Sbjct: 1 MILLTGSMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTT 60 Query: 63 YVVFSFLKEKKAMLTTPITISKNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + L +T S A S G MT++ L +++ SAN+ A Sbjct: 61 LIALE-----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAY 115 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+AE + T + FV MN +K LG THF N HG+ HYT DMA+++ Sbjct: 116 AVAEHVGGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARA-AYQN 174 Query: 182 PQYMHYFQIKGLEIKGKKYP-------NTNWAVGT-------FLGADGMKTGFTCASGFN 227 + I N N + + G G KTG+T A+ Sbjct: 175 ETFRIIVGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANST 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 +V A + +LI V++ N S +L F N Sbjct: 235 LVTYAERDGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQ 274 >gi|294501119|ref|YP_003564819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] gi|294351056|gb|ADE71385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551] Length = 382 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 30/349 (8%) Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 M++ + I + LS S A + L++ +G V+ D AS Sbjct: 1 MKRSKKSIIYLFIVLLCLSGWPSTSSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + K K +T+S +A S+ +G + L + + L+++S Sbjct: 61 ITKIMTAILAIESGKINK-----TVTVSHSAVGVEGSSVYLVEGEKIKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE++ +E FV MN ++ +G++ T F N HG+ H H +TA DMA+L Sbjct: 116 GNDAAVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLM 175 Query: 175 WRIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGT-FLGADGMKTGFTCASGFN 227 + + K +K + + N N + T + G KTG+T + Sbjct: 176 RYAMNNKI-FKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRT 234 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQ 282 +V +A + LIAV + A D S+ F + ++ I FY+ Sbjct: 235 LVTTATKDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLAAKGELADIKDSFYK 291 Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331 L + + T+KE + + + K+ E ++ Sbjct: 292 DQLYIKRNVV---YPLTKKEQSSVEVKTTLIQPKKQWKETGEVPNVVGK 337 >gi|218132659|ref|ZP_03461463.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC 43243] gi|217992385|gb|EEC58388.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC 43243] Length = 436 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 18/259 (6%) Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 + T L+D +TG ++ E PAS TK+MT+ + + L IT Sbjct: 24 ASPTISAGSAILIDADTGAILYEKDCHSRAYPASTTKIMTSLLAIE-----NSSLDDVIT 78 Query: 82 ISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138 SK A+ + +N+ ++G T++ AL ++KSAN++A I E + + F M Sbjct: 79 FSKAAANSYKWDEANTGTREGEQFTMEQALYATLLKSANEVAYGIGEYIAGSIPAFSDMM 138 Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----------FPQYMHYF 188 N ++ LG THF N +G+ HYTTA D+A++ + Sbjct: 139 NERARELGALNTHFNNPNGLSDTNHYTTAYDLAMIGRACFNNSTFMTISSSVNYSIPPTN 198 Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + +++ N + G KTGFT SG+ ++ A + D LI V+ D Sbjct: 199 KTAETRYFRQRHGMANSNGYQYEYFKGGKTGFTDESGYTLITFAQKDDMRLICVVFRESD 258 Query: 249 RNTRNKVSASLLSMGFYNK 267 +R S +L GF N Sbjct: 259 DASRYVDSKALFDYGFNNF 277 >gi|229160519|ref|ZP_04288514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] gi|228622929|gb|EEK79760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803] Length = 362 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 20/324 (6%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ AS+TK+MTA + Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKE 302 A +L GF K + + + ++ +N V S V T++E Sbjct: 235 SASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 291 Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326 + +++ DK + D K+ Sbjct: 292 KKSVVLKVEL--DKSTKLTDGVKV 313 >gi|142820|gb|AAA22377.1| penicillin-binding protein 5 [Bacillus subtilis] Length = 382 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 138/327 (42%), Gaps = 22/327 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 MR F + + M+S + +++ A ++D +G V+ AS Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TK+MTA + + +T+S NA S +G + L + + L+++S Sbjct: 61 ITKIMTAVLAIES-----GKMDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174 ND AVAIAE + + FV MN ++ LG+ T F N HG+ H HY+TA DMAIL+ Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175 Query: 175 WRIKTDFPQYMHY-FQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232 + + E + N N + + + G KTG+T + +V++A Sbjct: 176 KYAIEAERLSKDFRHKNIQAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD-----RKKINYIIKDFYQQNLSN 287 + LIAV + + + + F + + I + FY+ Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292 Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAK 314 + +I+ + +KE + NT + + K Sbjct: 293 KR-DITYLLTEEEKENVKINTTLLKPK 318 >gi|160946179|ref|ZP_02093390.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270] gi|158447702|gb|EDP24697.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270] Length = 391 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 16/289 (5%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLL-DTNTGHVIAENYPDHPWNP 53 M+ ++++A++ +I F+ A++ K +L+ D +G + D P + Sbjct: 1 MKFKRALLSLALIFSIC-FVGTAKSYAIFGIEKKTTASLIGDAKSGALFVAENIDEPLSI 59 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113 AS++KLMT Y+V + E K + + IS NAS S+ K G +++ + L L+V Sbjct: 60 ASISKLMTYYLVKEKIAEGKLKMEDKVKISINASREEGSSLNLKAGEQISIKDLLDGLMV 119 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMA 171 S ND AVA+AE + ++E KFV MN +K LGL F NA G+ ++G + + RD+ Sbjct: 120 VSGNDSAVALAEVVAESESKFVTMMNEKAKELGLQNATFTNASGLTKNGQDNKMSTRDIF 179 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIV 229 LS I +P+ + Y + LE + + +T VG G DG+KTG T +G+ +V Sbjct: 180 TLSKAIIEKYPEVLEYAKTTVLEQPSRNFKKESTIPLVGQVEGVDGLKTGHTDEAGYCLV 239 Query: 230 ASAIQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 ++ + +I+V++GA + R + +L+ N RK ++ Sbjct: 240 STMKIKKGETEFRVISVLMGAKTKADRAQYMKDMLNYAKQNIETRKIVD 288 >gi|291530422|emb|CBK96007.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 409 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 14/281 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI---------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51 +++ + L+ + S+ A + + + +TG V+ E+ Sbjct: 24 IKRITAGVTAFALAAVMQGASLTAFSEGDVSAVDSITKAAIVTEVSTGQVLYEHNSHERL 83 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111 AS+TKLM + +++ + T IT + A+ S G M+ + ++ + Sbjct: 84 PMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSV 143 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 ++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D A Sbjct: 144 VIASANDACVAVCEYITGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTA 203 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-GKKYP---NTNWAVGTFLGADGMKTGFTCASGFN 227 +LS +++ Y +F + ++ G++ NTN + + G G KTG T +G Sbjct: 204 LLS-AAVSEYDCYNEFFATRLDYVREGERQTQLLNTNKMMQRYDGIIGGKTGTTDKAGCC 262 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + A +G+ L AV LG + R LL+ GF Sbjct: 263 LAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGFSGFE 303 >gi|266621645|ref|ZP_06114580.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288866679|gb|EFC98977.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 541 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 130/300 (43%), Gaps = 31/300 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53 M FL + + +L FP ++A + + ++D +TG V+ + + P Sbjct: 20 MSAFL--LCLMLLMGAFPATALAAPDWPSGVSVQAESGIVIDADTGTVLWGQNIHNQYFP 77 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKL 110 AS+TK+MTA +V L +T S NA E SN+ +G +++ + L Sbjct: 78 ASITKIMTALIVIETC-----SLDETVTFSHNAVFNVEAGSSNAGINEGDKLSVKDCLYA 132 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++KSAN+ A A+AE + + + F MN +K LG + THF N G+ HYT+ DM Sbjct: 133 LLLKSANEAANALAEHVAGSTEAFADMMNAKAKELGCTDTHFANPSGLNDPEHYTSTYDM 192 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAV----GTFLGADGMKT 218 A+++ P + ++ YP + G G KT Sbjct: 193 ALIARAAFL-NPTFEEIDSTAYYKLPPNSINPEGLTIYPGHKMLKKSTPYYYPGIVGGKT 251 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 G+T +G +V A + LIAVIL + +LL GF N + ++ K Sbjct: 252 GYTTLAGNTLVTCARKNGLKLIAVILKGSTPQ-YWTDTKNLLDFGFENFVSVRAADHETK 310 >gi|88607085|ref|YP_505745.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma phagocytophilum HZ] gi|88598148|gb|ABD43618.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma phagocytophilum HZ] Length = 386 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 4/270 (1%) Query: 4 FLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 L + L + P A K P+ + + + ++ E+ D P AS++KLMT Sbjct: 8 LLFKAFICALIFVLPAHPDASGLRTKAPHAIVFEWGSKTILFEHDVDAPTPTASMSKLMT 67 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Y+V LK L + +S+ A+ + K G +++++ +K V S ND + Sbjct: 68 LYIVLKNLKAGNIKLEDNLRVSEGAASAGAPTAFLKTGQLISVNDLIKGAAVASGNDACI 127 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +AE L +++KFV+ MN +K L L + F+N G + + RD+ ILS RI DF Sbjct: 128 TLAEGLYTSQEKFVEEMNRVAKELDLKNSRFVNVTGWPD-DNMMSVRDLLILSARILQDF 186 Query: 182 PQYMHYFQIKGLEIKGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 P+Y ++F K G + DG+KTG T G+ +VASA++ + ++ Sbjct: 187 PEYYYFFGEKQFTYNGITQKNYNALLNYNNIEVDGIKTGHTRTGGYGMVASALKDGRRVL 246 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270 VI G R + L+ + + + Sbjct: 247 VVINGLSTETERAYEAKKLILYALNHFSTK 276 >gi|308270080|emb|CBX26692.1| hypothetical protein N47_A07210 [uncultured Desulfobacterium sp.] Length = 370 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 134/313 (42%), Gaps = 15/313 (4%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 +D TG ++ PD PAS TKLMTA V +T+SK AS Sbjct: 64 AAVAMDVTTGKILYAKNPDLKCFPASTTKLMTAIVSIENADLNNL-----VTVSKTASNV 118 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P + FK G +T++ L +V SAND AVA+AE + + FV+ MN + +G S Sbjct: 119 SPHKAGFKAGDKVTVEKLLYAALVGSANDAAVALAEGVSGSVDGFVELMNKKAVAIGASN 178 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTN 204 T F+N +G+ G Y TA D++ + +P+ + EI NTN Sbjct: 179 TRFINPNGLPGPGQYITASDLSKILQYALR-YPKLREIIGTRFAEITTLDGMPIHLKNTN 237 Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264 + + G KTG+T +G V +A + + +I +LG+ R K S +L++ GF Sbjct: 238 KLLWSDEEVIGGKTGYTRRAGHCFVGAAERENDKIIIALLGSPSRKDLWKQSETLIAKGF 297 Query: 265 Y-NKTDRKKINYI--IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHF 320 + + + Y K + I +++ + K +D+ Sbjct: 298 EIKENSEEPLVYCTQTKPLLAKTSYKNRTTIRNKKIKKHSGKRSILRKSKKHKRDRMIAK 357 Query: 321 IDFEKITLLKNKI 333 +++ + NKI Sbjct: 358 NNYKYKDIADNKI 370 >gi|323704094|ref|ZP_08115696.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum nigrificans DSM 574] gi|323530944|gb|EGB20881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum nigrificans DSM 574] Length = 373 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 37/337 (10%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L++ TG + D PASLTK+MTA + K L +T+ Sbjct: 17 PPKVRASAACLMEVATGRIYFAKQGDKRREPASLTKIMTAILAIE-----KGNLKDVVTV 71 Query: 83 SKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141 K A+ + G + L++ LK ++ SAND VAI E + + F++ MN+ Sbjct: 72 GKKAAAVSMGQDIGLSPGDRLYLEDLLKAALMYSANDSTVAIGEHIAGSHDAFIKMMNDK 131 Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------ 195 +K LG+ T + N +G HYTTA D+A L+ P + + + + I Sbjct: 132 AKVLGMKDTRYANTNGYHNPNHYTTAIDLAKLTCYALK-NPVFASFVRTREATITWLPKE 190 Query: 196 -------------KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 + + NTN + + F G +G+KTG T +G ++ASA + + L+A Sbjct: 191 KTGNPQEVQTETPRQRVIHNTNALLESNFEGINGVKTGTTPRAGKCLIASATREGRQLVA 250 Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR---KKINYIIKDFYQQNLSNEVPNISEEVCT 298 V+L + + R + +LL GF + +K + + + + +V ++ Sbjct: 251 VVLNSPN---RWDDATNLLEYGFREFRPQVLSEKDEVMGEIPVVEGVEQKVTLVAA---- 303 Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 + E + + K + + K+ K Sbjct: 304 KKVEAYVARIDSDKVERKINLAPPPKAPIKQGIKLGK 340 >gi|227873312|ref|ZP_03991575.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268] gi|227840841|gb|EEJ51208.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268] Length = 525 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 34/291 (11%) Query: 4 FLVIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 + V++ + S +F ++A+T + L+D + ++ + + PAS+ Sbjct: 19 YFVLLFSMLFSFVFSQQALADTWPTCVDQIEADGALLMDAKSSTILYAKNENTHYFPASI 78 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLI 112 TK++TA VV ++ L +T S+ A+ E + G +++ + L L+ Sbjct: 79 TKVLTAIVVLEHVE----NLEEKVTFSQEATRGNLENNSTVIAASPGDKLSVRDCLYSLL 134 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 + SAND A A+AE + + +KF + MN + +G + +HF N G+ HYT+A DMA Sbjct: 135 LHSANDCANALAEHVAGSNEKFAELMNQKAAEIGCTNSHFTNPSGLNNPEHYTSALDMAK 194 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGT---------------FLGADGM 216 + P + + KYP+ N T + G Sbjct: 195 IMQYAI-SNPTFCQIDATQVYTHGPLIKYPDPNAPENTIYAHHKMMKKSNKEYYSGVFAG 253 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 KTG+T +G +V + +GD +LI VIL + R S L GF N Sbjct: 254 KTGYTLLAGNTLVTACKRGDTTLICVILNGHNSQYR--DSKKLFDFGFANF 302 >gi|228991455|ref|ZP_04151407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] gi|228768257|gb|EEM16868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM 12442] Length = 329 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 11/274 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M L + A+L F F + K L+D + ++ + D P++ ASL+K+M Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPSIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+V +++ K + IS ++ + +N +T+ + +++ S N A Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177 V +AE + K+E+ F MN + LGLS T+F NA GV+ + TA D + L+ + Sbjct: 121 VFLAEHISKSEQDFTNLMNEKATQLGLSNKTYFANATGVINKQKESKITALDASKLAQHL 180 Query: 178 KTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIV 229 TD+P + Q+ K NTN + + F G DG++T F+ +G++ Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 ++A QG++ I++++ A N+ + L + G Sbjct: 241 STAKQGNKRFISIVMEANGENSAFIETKKLFTYG 274 >gi|255307153|ref|ZP_05351324.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC 43255] Length = 394 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 5 LKKIISLAMI--LVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 63 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 123 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 182 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + + Q ++ + + NTN + DG+KTG+T Sbjct: 183 AKDIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 242 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 243 AGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 302 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 303 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341 >gi|126699758|ref|YP_001088655.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630] gi|115251195|emb|CAJ69026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile] Length = 397 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 8 LKKIISLAMI--LVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 66 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 125 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 126 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 185 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + + Q ++ + + NTN + DG+KTG+T Sbjct: 186 AKDIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 245 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 246 AGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 305 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 306 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344 >gi|167759042|ref|ZP_02431169.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704] gi|167663449|gb|EDS07579.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704] Length = 406 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 142/368 (38%), Gaps = 38/368 (10%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLP---------YYTLLDTNTGHVIAENYPDHP 50 MR+ L+ I +A + I PF + A+ + L+D ++G V+ + Sbjct: 5 MRKNRLLGILLACILLIQPFSAQAKESDAADEPDNLYAQSAVLMDADSGRVLFGKNENEA 64 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110 AS TK+MT + ++E + + S A+ P + L + L Sbjct: 65 KPMASTTKIMTCIMALENMEEGQI-----VAASDYAASQPKVRLGVRGKEEYYLKDILYS 119 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTT 166 L+++S ND AV +AE + + + F MN ++ +G T+F+ +G+ + H TT Sbjct: 120 LMLESHNDSAVVVAEGIAGSVEAFAGLMNQKAEEIGCKDTYFVTPNGLDAYDDGGTHSTT 179 Query: 167 ARDMAILSWRIKTDFP---QYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMK 217 ARD+A + + P +++ K N N + GA K Sbjct: 180 ARDLASIMRYCIMESPKKDEFLEITGTKNYHFTNVAGDREFSCNNHNAFLDMMDGALTGK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKIN 274 TGFT +G+ V + + ++ I +L +++ + K + +L+ G N R Sbjct: 240 TGFTGDAGYCYVGALRKDGKTFIVALLACGWPNNKDYKWKDTKALMEYGLANYEYRNVWE 299 Query: 275 Y-------IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + + N + V +KE+ ++A+ K + Sbjct: 300 EPALSQIRVQEGVSAGNPYKRESKVQAVVKGGEKEVNALLKADEKAEVKRKVKDHLKAPL 359 Query: 328 LLKNKITK 335 K+ + Sbjct: 360 KKGQKVGE 367 >gi|298251261|ref|ZP_06975064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297545853|gb|EFH79721.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 338 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 26/270 (9%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 ++ + A LLDT+TG+V+ + + P AS TK+MTA VV A Sbjct: 67 SVLTVVGGAPPIDAKAAYLLDTDTGNVLDDQNAEQPLPMASTTKIMTALVVIEA-----A 121 Query: 75 MLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130 L +T+S + +Y SN+ G T+T+++ L L++ S +D A+ +A ++ + Sbjct: 122 NLKQEVTVSPDIPQYVFQHNGSNAKLVPGDTLTINDLLYALMLPSGDDAAIVLARAVAGS 181 Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILSWRIKTDFP 182 FV MN + L THF+N G+ GHY++ARD+A L+ P Sbjct: 182 SDAFVGMMNCFALRHHLFQTHFINPDGLTYYDANGKPLPGHYSSARDLARLT-AYALSNP 240 Query: 183 QYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + ++ + NTN + G+KTGFT +G+ +V SA + Sbjct: 241 LFAKIVGTRQYDLAWSPKHGAYHWTNTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDH 300 Query: 237 QSLIAVILGALDRNT--RNKVSASLLSMGF 264 L+ +L + D +T R + + +LL GF Sbjct: 301 HHLVGTVLFSSDTDTNQRFRDAKTLLEWGF 330 >gi|254975737|ref|ZP_05272209.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-66c26] gi|255093124|ref|ZP_05322602.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP 107932] gi|255314866|ref|ZP_05356449.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-76w55] gi|255517540|ref|ZP_05385216.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-97b34] gi|255650651|ref|ZP_05397553.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-37x79] gi|306520578|ref|ZP_07406925.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-32g58] Length = 394 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 5 LKKIISLAMI--LVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 63 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 123 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 182 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + + Q ++ + + NTN + DG+KTG+T Sbjct: 183 AKDIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 242 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 243 AGYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 302 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 303 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341 >gi|164687904|ref|ZP_02211932.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM 16795] gi|164602317|gb|EDQ95782.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM 16795] Length = 399 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 31/343 (9%) Query: 1 MRQFLV-IIAMAMLSNIFPF-LSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55 +++F+ ++ ++++ NIF +S+A N L+D T + E PD AS Sbjct: 4 LKKFVSKVLLLSIILNIFTTSISLAYDNIDRYSKGSILIDQLTNRTLYEKNPDKKMPLAS 63 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 L+K+MT + +KE K I I + ++ S+ K G + L + L++ S Sbjct: 64 LSKMMTFLIAIESIKEGKVKENDIIEIDQEIAKVKGSSYKLKVGEKVPLIELMNGLMIVS 123 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYT 165 ND A+AIA+ + + FV+ MN +K LG+ T F+N +G+ + + Sbjct: 124 GNDAAIAIAKHIGGSVDDFVKIMNKKTKELGMKNTSFVNPNGLPIYSLKEPSKPPKENIS 183 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222 T RD++IL+ + ++ + + K +G NTN + DG+KTG+T Sbjct: 184 TPRDISILAKYMFDNYEKEVTSITDKQVYSYPERGFCKNNTNVLLQLIPDVDGVKTGYTG 243 Query: 223 ASGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR---KK 272 +G+ + S D LI V+LG +N R + S SLL G N + +K Sbjct: 244 NAGYCLCFSMKTHKDDKNDCDNRLIGVVLGTNHKNKRTQASMSLLEYGKQNFKTKNIAQK 303 Query: 273 INYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKE 312 + K + EV +EE + + E I +KE Sbjct: 304 DELVGKKYICGIPDMEVTLKAEEALYIVCNEDEDIKSEVTLKE 346 >gi|167462338|ref|ZP_02327427.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 395 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 18/259 (6%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L+D ++G ++ D AS TK+MTA + + L+ + + K Sbjct: 30 STHAEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIE-----QGRLSDMVKVGK 84 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NA+ S+ K G M+L N L ++++S ND A+ IAE + + + F MN + Sbjct: 85 NAAGKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASL 144 Query: 145 LGLSATHFMNAHGVVQH---GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 LG++ THF N G+ HY++A DMA L+ P + + K + Sbjct: 145 LGMAHTHFTNPSGLDDGKEMKHYSSANDMAKLT-AYALKNPVFRDIVKTKTKKAPNPNAN 203 Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N N + + GADG+KTG+T + +V+SA +G+Q L AV L + Sbjct: 204 WDYSWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WAD 260 Query: 256 SASLLSMGFYNKTDRKKIN 274 A LL GF ++ + Sbjct: 261 HAKLLDYGFETYPLKQVLQ 279 >gi|213019298|ref|ZP_03335105.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995407|gb|EEB56048.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 110/212 (51%) Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT YV F +LK + +S+ A E S+ K+G +T+ L+ + + S ND Sbjct: 1 MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 60 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 +A+AE + +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI T Sbjct: 61 CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 120 Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 DFP+Y F + L N N + +G DG+KTG T A G+ I+ SA + D+ + Sbjct: 121 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 AV+ G R + + L+ + +K Sbjct: 181 FAVVNGLDTEKERIEEAKRLIQYSLNHFNTKK 212 >gi|260683741|ref|YP_003215026.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260687401|ref|YP_003218535.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260209904|emb|CBA63846.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260213418|emb|CBE05068.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] Length = 397 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 8 LKKIISLAMI--LVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 66 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 125 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 126 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 185 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + + Q ++ + + NTN + DG+KTG+T Sbjct: 186 AKDIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 245 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 246 AGYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 305 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 306 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344 >gi|229016825|ref|ZP_04173754.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|229023030|ref|ZP_04179546.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228738278|gb|EEL88758.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272] gi|228744477|gb|EEL94550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 362 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 20/324 (6%) Query: 12 MLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVMPIPTYAKLNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K K+ +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ + + Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-KYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSNEV-PNISEEVCTTQKE 302 A +L GF + + + + ++ +N V S V T++E Sbjct: 235 SASSD---WDDHMNLFDKGFEHFKQTTVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 291 Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326 + +++ DK + D KI Sbjct: 292 RKSVLLKVEL--DKSAKLTDGVKI 313 >gi|322381780|ref|ZP_08055734.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154168|gb|EFX46490.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 386 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 18/259 (6%) Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84 + L+D ++G ++ D AS TK+MTA + + L+ + + K Sbjct: 21 STHAEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIE-----QGRLSDMVKVGK 75 Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 NA+ S+ K G M+L N L ++++S ND A+ IAE + + + F MN + Sbjct: 76 NAAGKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASL 135 Query: 145 LGLSATHFMNAHGVVQH---GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199 LG++ THF N G+ HY++A DMA L+ P + + K + Sbjct: 136 LGMAHTHFTNPSGLDDGKEMKHYSSANDMAKLT-AYALKNPVFRDIVKTKTKKAPNPNAN 194 Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + N N + + GADG+KTG+T + +V+SA +G+Q L AV L + Sbjct: 195 WDYSWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WAD 251 Query: 256 SASLLSMGFYNKTDRKKIN 274 A LL GF ++ + Sbjct: 252 HAKLLDYGFETYPLKQVLQ 270 >gi|307708560|ref|ZP_07645025.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC 12261] gi|307615476|gb|EFN94684.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC 12261] Length = 413 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 146/355 (41%), Gaps = 31/355 (8%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 K Q+ V + E+ T + + + +S + + Sbjct: 300 Q---KGDAYQDSKAPVQDGKEDTVTAIAKDDISLIERVGGQSSQSVQFTPDSKAI 351 >gi|315613037|ref|ZP_07887948.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis ATCC 49296] gi|315315147|gb|EFU63188.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis ATCC 49296] Length = 413 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 28/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + +S E + ++ TG ++ E + P AS+TKL Sbjct: 1 MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L + L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALDQGTISLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A ++T R +++LL N + + Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299 Query: 274 N 274 Sbjct: 300 Q 300 >gi|255656129|ref|ZP_05401538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-23m63] Length = 394 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 160/339 (47%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 5 LKKIISLAMI--LVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 63 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 123 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 182 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + ++ Q ++ + + NTN + DG+KTG+T Sbjct: 183 AKDIAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 242 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 243 AGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 302 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 303 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341 >gi|296450439|ref|ZP_06892195.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296879438|ref|ZP_06903432.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296260700|gb|EFH07539.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296429584|gb|EFH15437.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 397 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 160/339 (47%), Gaps = 30/339 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 8 LKKIISLAMI--LVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 65 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 66 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 125 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 126 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 185 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + ++ Q ++ + + NTN + DG+KTG+T Sbjct: 186 AKDIAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 245 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-- 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 246 AGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKD 305 Query: 275 -YIIKDFYQQNLSNEVP-NISEEVCTTQKEIINYNTQMK 311 +I K + + EV +E+ T K+ + +++K Sbjct: 306 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344 >gi|228997557|ref|ZP_04157170.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] gi|228762185|gb|EEM11118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17] Length = 329 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 11/274 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M L + A+L F F K L+D + ++ + D P++ ASL+K+M Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPLIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+V +++ K + IS ++ + +N +T+ + +++ S N A Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177 V +AE + K E+ F MN + LGLS T+F NA GV+ + TA D + L+ + Sbjct: 121 VFLAEHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHL 180 Query: 178 KTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIV 229 TD+P + Q+ K NTN + + F G DG++T F+ +G++ Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 ++A QG++ I++++ A N+ + L + G Sbjct: 241 STAKQGNKRFISIVMKANGENSAFIEAKKLFTYG 274 >gi|229005188|ref|ZP_04162908.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] gi|228756048|gb|EEM05373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4] Length = 329 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 11/274 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M L + A+L F F K L+D + ++ + D P++ ASL+K+M Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPLIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 T Y+V +++ K + IS ++ + +N +T+ + +++ S N A Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177 V +AE + K E+ F MN + LGLS T+F NA GV+ + TA D + L+ + Sbjct: 121 VFLAEHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHL 180 Query: 178 KTDFPQYMHYFQIKG--LEIKGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIV 229 TD+P + Q+ K NTN + + F G DG++T F+ +G++ Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 ++A QG++ I++++ A N+ + L + G Sbjct: 241 STAKQGNKRFISIVMKANGENSAFIEAKKLFTYG 274 >gi|293365274|ref|ZP_06611991.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC 35037] gi|291316724|gb|EFE57160.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC 35037] Length = 413 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 28/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ ++ +S E + ++ TG ++ E + P AS+TKL Sbjct: 1 MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A ++T R +++LL N + + Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299 Query: 274 N 274 Sbjct: 300 Q 300 >gi|168335230|ref|ZP_02693333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Epulopiscium sp. 'N.t. morphotype B'] Length = 377 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 21/313 (6%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ + + + + P + T L++ + V+ + AS TK+ Sbjct: 1 MKRGITAVAIIVVCLSNMPVEAKIGTLGGKGVVLVEPESMRVLYGINENTQLPMASTTKI 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MTA + L +T+S NA++ PP + K+ L + L L+++S ND Sbjct: 61 MTAIIALE-----NGNLEDVVTVSANAAKAPPVDLKLKENEKQYLGDLLYSLMLQSHNDT 115 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 AVAIAE + + ++F + M + LG T F +G+ HY+T D+A++ Sbjct: 116 AVAIAEHIGGSVEEFCEMMTTKANELGAVNTKFETPNGLDSEQHYSTPYDLALIG-AYAL 174 Query: 180 DFPQYMHYFQIKGLEIKGK--------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231 P+++ + I + + N N + GA+G+KTGFT +G+ V S Sbjct: 175 KNPKFVEIINTPYMNIPTRELEGAGKHQLQNKNGFLHRMPGANGIKTGFTSKAGYCFVGS 234 Query: 232 AIQGDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQNLS 286 A +G+ +LI V L G+ + + +++ GF N ++ I+ + +N Sbjct: 235 ATKGNMTLIGVSLGNFGSAGKERKYTDVKTMIEHGFNNYKMYTLVDKEQILDNIAIKNGK 294 Query: 287 -NEVPNISEEVCT 298 EV +++E + Sbjct: 295 EEEVKLVAKERVS 307 >gi|257456802|ref|ZP_05621986.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC 35580] gi|257445808|gb|EEV20867.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC 35580] Length = 480 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 22/291 (7%) Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 ++ L+ + ++D +G ++ E PD PASLTKL+ Y V Sbjct: 66 SLLHLAPCTRDIPQPAAISARSAVVMDAASGALLFEKNPDQSIPPASLTKLVAMYTVMQA 125 Query: 69 LKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124 ++ + L+ I K + S K +T++ + + V S ND AVA+A Sbjct: 126 VERGEINLSDRIIPPKESWAVNIPPGSSLMFLGKNQQVTVEELMLGVAVVSGNDAAVALA 185 Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184 + FVQ MN LGL THF + +G+ ++ + TTARD A S +P++ Sbjct: 186 IHTAGSVAAFVQRMNEAVAALGLQNTHFEDVNGLSEY-NRTTARDFARFSAVYVRKYPEH 244 Query: 185 M-HYFQIKGLEIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 + + + L + P TN + G DG+KTGF SGFNI +A Sbjct: 245 LARFHSARELTYPQPHNMLKSQTSFRQPATNTLLDKLDGCDGIKTGFIYESGFNIALTAQ 304 Query: 234 QGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIK 278 + IAVILG +N R L+ F + + R N+ ++ Sbjct: 305 RDGNRFIAVILGGAGKNMAEGKALREANGKILMEWTFSHFSTRYAQNFPLE 355 >gi|171910636|ref|ZP_02926106.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM 4136] Length = 373 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 12/245 (4%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 A + ++D TG V+ E D AS KL+TA ++ L +T+ Sbjct: 132 APKVQAERVIVVDAGTGEVLFEKNADRKAPVASTQKLLTALLLTE-----DGNLDQILTV 186 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + ++ P K G L L+VKS+NDIA A+A T +FV+ MN + Sbjct: 187 EPDDTKCAPVRLGIKAGEQYPRRQLLTALLVKSSNDIAQALARDNAGTMDEFVKKMNARA 246 Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----G 197 LG+ T F+N HG+ G Y+TARDMA ++ P K K Sbjct: 247 AELGMKDTRFLNPHGLPADGQYSTARDMARVAL-TVDAVPDIRRMISTKSFVFKKNDGSW 305 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 NTN + + DGMKTG+ A+G+ +++S + + I V+L + K S Sbjct: 306 INLENTNRVLRNYAFCDGMKTGYAQAAGYCLISSGEKDNHRRIVVVL-SDTSQAVWKDSQ 364 Query: 258 SLLSM 262 SLL Sbjct: 365 SLLEW 369 >gi|290968005|ref|ZP_06559554.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp. type_1 str. 28L] gi|290781911|gb|EFD94490.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp. type_1 str. 28L] Length = 321 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P LLD NTG ++ + + +PAS TK++T + + L Sbjct: 40 PTAEAEPVTAAESACLLDVNTGKILFSYHGNKWVHPASTTKIVTLLTAL---AQGRERLE 96 Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 P+ IS+ A E PS +++ AL ++V S ND AVA+AE+L + F Sbjct: 97 QPLYISRQAVETEPSRLGLATTDKVSVREALTGMMVVSGNDAAVAVAETLGGSVPAFADM 156 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK- 196 MN +K +G + + F+N +G+ Q H+TTA DMA ++ ++ ++ +K +K Sbjct: 157 MNGQAKKMGATHSLFLNPNGLTQVHHHTTAIDMARMAAYGMKNYAEFRDIVGLKSYTMKY 216 Query: 197 ------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 Y + ++GADG+KTG+T A+G +VASA + +LI + Sbjct: 217 LDAHKPKTVYTTNRFLRSGYIGADGIKTGYTRAAGPCLVASATRNGHTLIVALFN---DA 273 Query: 251 TRNKVSASLLSMGFYNKTDRKKI 273 R + +A +L GF + + + Sbjct: 274 ARWQDAARILDYGFRHLPQERFV 296 >gi|322376423|ref|ZP_08050916.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334] gi|321282230|gb|EFX59237.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334] Length = 413 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 146/349 (41%), Gaps = 32/349 (9%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ ++ ++++ + + + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIILTLLTLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYRLTTNSEASNVPMEA-RNYTVEQLLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAHRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTT-QKEIINYNTQMKEAKDKESHFI 321 K Q+ V + E+ T K+ I+ ++ K F Sbjct: 300 Q---KGDAYQDSKVPVQDGKEDTVTAVAKDDISLVERVGNQSSKSVQFT 345 >gi|118443151|ref|YP_878109.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] gi|118133607|gb|ABK60651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT] Length = 375 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 138/310 (44%), Gaps = 24/310 (7%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--------KLPYYTLLDTNTGHVIAENYPDHPWN 52 +R +I+ + ++ NI SI T +D+ + V+ E + Sbjct: 4 LRTISIILNICLIFNIAFVPSIEATEPKNNSIYVDARCAIAMDSKSKCVLYEKNAEMLVP 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS TK+MT V + L T +S A+ S +KKG ++L L L+ Sbjct: 64 IASTTKIMTTLVALKY-----GNLDTKYEVSPKAASIRGSKVGYKKGEQISLKELLYGLM 118 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D+A Sbjct: 119 LRSGNDAAITIAEGISGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLAR 178 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ + K + + +K ++ K + Y N N + A+G+KTG+T +G + Sbjct: 179 ITAKAK-ENKLFNEIVGVKDIDEKQHGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCL 237 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288 V S + D +I V+L R K + + N +K ++ KD N+ + Sbjct: 238 VTSVKEDDDDVIIVVLNCT---PRWKETKKIYDFVKENYDFKKLVS---KDQVLDNIEDN 291 Query: 289 VPNISEEVCT 298 N + VC Sbjct: 292 KGNKVKLVCN 301 >gi|228984648|ref|ZP_04144821.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775042|gb|EEM23435.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 362 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 145/341 (42%), Gaps = 29/341 (8%) Query: 12 MLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 M +++ P + A+ N L++ +G V+ P AS+TK+MTA + Sbjct: 1 MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60 Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 + +++S A S K G + L++ + L+++S ND A IAE++ Sbjct: 61 -----GKMKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGNDAAQVIAENVG 115 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHY 187 + + FV MN +K +G+ THF N HG+ G HY++A DMA+L+ R + Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLT-RYAMGNETFKKI 174 Query: 188 FQIKGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 F K + YP N + A G KTGFT +G +V +A + + LI V L Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDELDLIVVTL 234 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN--------EVPNISEE 295 A +L GF + + + ++ +N VP +E Sbjct: 235 SASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPLTEQE 291 Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 +K ++ K AK K+ + +I + K+ ++ Sbjct: 292 ----RKNVVLKVELDKSAKLKDGVKVGKTEIYVGNEKVGER 328 >gi|331266509|ref|YP_004326139.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3 [Streptococcus oralis Uo5] gi|326683181|emb|CBZ00799.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3 [Streptococcus oralis Uo5] Length = 413 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 28/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ ++ +S E + ++ TG ++ E + P AS+TKL Sbjct: 1 MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A ++T R +++LL N + + Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299 Query: 274 N 274 Sbjct: 300 Q 300 >gi|197303547|ref|ZP_03168586.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC 29176] gi|197297545|gb|EDY32106.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC 29176] Length = 434 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 21/259 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D ++G ++ E P AS TK+MT + + IT+S A+ Sbjct: 67 ARSAVLMDGDSGRILFEKNGSDPRPMASTTKIMTCILALEASDPSR-----KITVSSQAA 121 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P + +G + L + L L+++S ND AVAIAE + + + F Q MN ++ +G Sbjct: 122 SQPKVHLGMTEGQSFYLKDLLYSLMLESHNDAAVAIAEGIDGSVEAFAQRMNQKAEEIGC 181 Query: 148 SATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQ---YMHYFQIKGLEIKGKK- 199 T+F++ +G+ H+TTAR++A++ PQ ++ + + + Sbjct: 182 KNTYFISPNGLDAQDSQSNHHTTARELALILRYCIMVSPQREAFLKITRTMQYTFQDCEK 241 Query: 200 -----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-- 252 N N + GA KTGFT +G+ V + + D++ I +L N R Sbjct: 242 NFSYSCNNHNAFLNMMEGALTGKTGFTADAGYCYVGALQRDDRTFIVALLACGWPNNRNY 301 Query: 253 -NKVSASLLSMGFYNKTDR 270 + L++ G N R Sbjct: 302 KWMDTKKLMTYGLENYVYR 320 >gi|255101277|ref|ZP_05330254.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile QCD-63q42] Length = 394 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 26/298 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYPDHPWNPASL 56 +++ + + + L I P S A+ + Y L+D TG V+ PD ASL Sbjct: 5 LKKIISLAMI--LVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASL 62 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +K+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S Sbjct: 63 SKMMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSG 122 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTT 166 ND A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +T Sbjct: 123 NDAAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENIST 182 Query: 167 ARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCA 223 A+D+AIL + + Q ++ + + NTN + DG+KTG+T Sbjct: 183 AKDIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGN 242 Query: 224 SGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +G+ + S + + +I V+LG +N R S +LL G N +K I+ Sbjct: 243 AGYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVID 300 >gi|322374431|ref|ZP_08048945.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300] gi|321279931|gb|EFX56970.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300] Length = 413 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 130/301 (43%), Gaps = 28/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + +S E + ++ TG ++ E + P AS+TKL Sbjct: 1 MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A ++T R +++LL N + + Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNLYARFTATSALLDYISANFALKTVV 299 Query: 274 N 274 Sbjct: 300 Q 300 >gi|89099074|ref|ZP_01171953.1| DacB [Bacillus sp. NRRL B-14911] gi|89086204|gb|EAR65326.1| DacB [Bacillus sp. NRRL B-14911] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 17/280 (6%) Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 L IA + +N+ + A + L++ +TG ++ E AS+TK+MTA Sbjct: 2 LLSCIAAVLAANLPAKVQAAYSASSGSAILMEQSTGRILYEKDAYTKKRIASITKIMTAI 61 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + L T +S+ A S+ + G + L++ + L+++S ND AVAI Sbjct: 62 LAIES-----GKLDTKAKVSEKAVRAEGSSIYLQPGEKILLEDLVYGLMLRSGNDSAVAI 116 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFP 182 AE + + + FV MN ++ +G+ THF N HG+ H HY+TA DMA+L+ Sbjct: 117 AEHVGGSLEGFVYLMNKKAEEIGMINTHFANPHGLDDHEEHYSTAYDMAVLTRYAMN-NE 175 Query: 183 QYMHYFQIKGL------EIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQG 235 Y K E + + N N + + G KTG+T + +V +A + Sbjct: 176 TYRKIAGTKMHRAPNPNESWDRVWKNKNRLLTEMYEYCTGGKTGYTKRAKRTLVTTASKD 235 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275 LIAV L D + GF + +K + Sbjct: 236 GLDLIAVTLNGPDD---WNDHIGMYESGFKEYSLKKVVEQ 272 >gi|323126583|gb|ADX23880.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 412 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 150/367 (40%), Gaps = 33/367 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ V++ + + P S + ++ ++G ++ E D AS+TKL+ Sbjct: 2 IKRLFVVLLITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITKLL 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+V+ + K + +TIS + Y SN T+ LK LIV +A Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDA-RKYTVKELLKALIVTNA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162 N A+A+AE + TE KFV M+ K G+S +NA G+ H Sbjct: 121 NSPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDEDE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +ARD+AI++ + T+FP+ + G+ + N+ + G DG+ Sbjct: 181 NLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFV 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G++ G + VA++++ +I V+L A D + LL N + +N Sbjct: 241 GYSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLN 300 Query: 275 YI----IKDFY-QQNLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 +K F + + VP ++E+ + + + KD +K + Sbjct: 301 KSKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSKIKKALHITKDSSIISAPVKKGQV 360 Query: 329 LKNKITK 335 L + Sbjct: 361 LAKATLQ 367 >gi|42784563|ref|NP_981810.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC 10987] gi|42740495|gb|AAS44418.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC 10987] Length = 423 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 157/367 (42%), Gaps = 39/367 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ L I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKILSILLVFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 178 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRK-KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324 N +K K++ Q ++V E+ T + + + + +S D Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKVGTEADKSLAEDGH 357 Query: 325 KITLLKN 331 + +K Sbjct: 358 LVAPIKK 364 >gi|258514292|ref|YP_003190514.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] gi|257777997|gb|ACV61891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfotomaculum acetoxidans DSM 771] Length = 409 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 15/280 (5%) Query: 2 RQFLVIIAMA-MLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 + + II + +L+ P + A L+D ++ PAS TK+ Sbjct: 4 KHIIGIIFLIYLLAFAAPVFADDAPDITGMTAVLMDAQNMQILYNKDMQERMYPASTTKI 63 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 +T + K + I +S A+ +N ++G +TL + L L++ S+ND Sbjct: 64 LTGIIAIE-----KGKMDDLIPVSWEAANTEGTNIGLQEGEKLTLRDLLYALLLSSSNDA 118 Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179 A AIAE K+ F MN +K +G +HF N HG+ HYTTA D+A+++ R Sbjct: 119 AEAIAEHYGKSADNFAVMMNQKAKEIGAVHSHFTNPHGLPDEDHYTTAYDLALIA-RYAM 177 Query: 180 DFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233 ++ + K + I K N N + + GA G+KTG+T A+G I A Sbjct: 178 QNDKFREIVREKEITIARVDPEGQKYMVNHNKLLSRYEGAIGIKTGYTVAAGQCIAAEVK 237 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 + D+ LIAV+L + + + +L + GF + + + Sbjct: 238 RDDRELIAVVLKSEGNDL-WTDTENLFNYGFNSFRNIYLV 276 >gi|229199512|ref|ZP_04326173.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] gi|228583917|gb|EEK42074.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293] Length = 425 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 160/378 (42%), Gaps = 50/378 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 3 MKKIFSILLVFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 60 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 119 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 120 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 179 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 180 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 239 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + GADG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 240 AAFAYEGADGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 299 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 300 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 356 Query: 317 ESHFIDFEKITLLKNKIT 334 + H I K IT Sbjct: 357 DGHLIAPIKKDAKVGSIT 374 >gi|251781775|ref|YP_002996077.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390404|dbj|BAH80863.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 412 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 150/367 (40%), Gaps = 33/367 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ V++ + + P S + ++ ++G ++ E D AS+TKL+ Sbjct: 2 IKRLFVVLLITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITKLL 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+V+ + K + +TIS + Y SN T+ LK LIV +A Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDA-RKYTVKELLKALIVTNA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162 N A+A+AE + TE KFV M+ K G+S +NA G+ H Sbjct: 121 NSPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDDDE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +ARD+AI++ + T+FP+ + G+ + N+ + G DG+ Sbjct: 181 NLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFV 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G++ G + VA++++ +I V+L A D + LL N + +N Sbjct: 241 GYSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLN 300 Query: 275 YI----IKDFY-QQNLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 +K F + + VP ++E+ + + + KD +K + Sbjct: 301 KSKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSKIKKALHITKDSSIISAPVKKGQV 360 Query: 329 LKNKITK 335 L + Sbjct: 361 LAKATLQ 367 >gi|164686325|ref|ZP_02210355.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM 16795] gi|164601927|gb|EDQ95392.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM 16795] Length = 442 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 35/296 (11%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 Y ++D TG V+ D PAS TK+ TAY+V +K L P+ I++ Sbjct: 26 YGVVIDYETGKVLGGKNIDSKVYPASTTKIWTAYLVVKNVK----NLDEPVEITE-PPGV 80 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 S+ + G T+ L+ L++ S+ND AV +A+ + + + F Q MN +K G Sbjct: 81 DGSSMYLEVGEIFTVRELLQGLLIHSSNDAAVVLAKYVSGSTQDFAQLMNKEAKKAGALN 140 Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----------GK 198 THF N HG+ HYTT DMA+L+ + ++ K + K + Sbjct: 141 THFNNPHGLPDDNHYTTPYDMAMLARKAMSEKV-IREIVSTKSISFKQQNTATSKINTSR 199 Query: 199 KYPNTNWAVGT--------------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + NTN + + + DG+KTG+T +G +++SA++ D +IA + Sbjct: 200 YFTNTNLFLTSNDKITYRKQSIPIKYDIVDGIKTGYTDLAGRCLLSSAVKNDMRVIAAVF 259 Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 + N S +LL GF N T + IN KD Y + E + + Sbjct: 260 KSFGTNV-YVDSRTLLDYGFENYTSKTIIN---KDDYTKTKRVLFTKEKEFIYQPK 311 >gi|163943071|ref|YP_001647955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] gi|163865268|gb|ABY46327.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis KBAB4] Length = 423 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 31/308 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195 NA G+ + +ARDM ILS I T +P+ + + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222 Query: 196 -KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW + ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYNKTDRK-KINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINY 306 R S +L+ GF N +K KI+ K + + V E+ V TT+ +Y Sbjct: 283 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTTKGSKSSY 342 Query: 307 NTQMKEAK 314 + K Sbjct: 343 KISTEADK 350 >gi|307706421|ref|ZP_07643231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321] gi|307618208|gb|EFN97365.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321] Length = 413 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 140/329 (42%), Gaps = 31/329 (9%) Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L+ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEA-RNYTVEQLLEATLVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSRKDD 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + +PQ + + G +TN+ + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273 TG T +G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 K Q+ V + E+ T + Sbjct: 300 Q---KGDAYQDSKAPVQDGKEDAVTAVAK 325 >gi|288871299|ref|ZP_06117136.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] gi|288863963|gb|EFC96261.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM 13479] Length = 465 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 72/257 (28%), Positives = 114/257 (44%), Gaps = 24/257 (9%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L+D TG+++ + + PAS+TKLMTA +V K L +T S Sbjct: 108 PEIQAQGAVLMDAATGNLLYSKNAETKYYPASITKLMTALLVAE-----KCSLDDTVTFS 162 Query: 84 KNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 K A E +G +T+ L L++KSAN++A +AE + F MN Sbjct: 163 KTAVTNLESGAVTLGLVEGDKLTVRQCLYGLLLKSANEVANGLAEHTAGSISAFADMMNA 222 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---- 196 +K LG + T+F+N +G+ HYTT DMA+++ +I Sbjct: 223 RAKELGCTNTNFVNPNGLNDSNHYTTPHDMALIARAAFQ-NATVCKVASTLSYQIPATQK 281 Query: 197 --------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G K N + + G G KTG+T +G +V A + LIAVI+ Sbjct: 282 AAARTISLGHKMLYPNDS-RYYQGVIGGKTGYTSLAGNTLVTCAERDGVRLIAVIM--KS 338 Query: 249 RNTRNKVSASLLSMGFY 265 ++T+ +++LL GF Sbjct: 339 KSTQYTDTSALLDYGFA 355 >gi|253579997|ref|ZP_04857264.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp. 5_1_39B_FAA] gi|251848516|gb|EES76479.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp. 5_1_39BFAA] Length = 419 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 14/244 (5%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 L++ +TG +I + AS TK+MT + K L + S A+ Sbjct: 182 ALLMNADTGQIIYGKNENVAHANASTTKIMTCILALENCK-----LNEKVKFSPYAASIE 236 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 PS G L + L L++ S ND AVAIAE + + KFV+ MN + +G + T Sbjct: 237 PSKLYANAGEIFYLKDLLYSLMLPSHNDTAVAIAEHVSGSTAKFVKLMNKKAAEIGCTNT 296 Query: 151 HFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYP--NT 203 HF +G+ HYTTA D+A ++ P + G+ Y T Sbjct: 297 HFATPNGLDAGYNHYTTASDLAKIAQYAIKK-PMFRKLVSTGYYSFSNLNTGRSYSIGTT 355 Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262 N +G G GMKTG+T +G+ V S + I+V+LGA + R + S +LL+ Sbjct: 356 NALLGNVPGVQGMKTGYTNKAGYCFVGLSYSARGNTYISVVLGADSSSARWQDSRTLLTY 415 Query: 263 GFYN 266 + + Sbjct: 416 AYNH 419 >gi|68171447|ref|ZP_00544835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis str. Sapulpa] gi|88657866|ref|YP_507852.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia chaffeensis str. Arkansas] gi|67999128|gb|EAM85790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis str. Sapulpa] gi|88599323|gb|ABD44792.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 381 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 4/273 (1%) Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 +R ++++ +S I +++ P + D + ++ E+ D P+S+T Sbjct: 2 LRHIILLLLYCFISIQVHISNAVALPIQTTAPQAAVFDFFSNTMLLEHNIDEQIAPSSMT 61 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 LMT YV F ++K + SK A + ++ + G + + + + +I SAN Sbjct: 62 NLMTLYVTFYYIKAGFVKMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDLINGIITTSAN 121 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D + +AE + +++ FV MN ++ L L+ +HF N G + + RD+ L+ RI Sbjct: 122 DACITLAEGVAGSQENFVDEMNRIAQKLNLTKSHFSNVIGAQDKNQFMSIRDLITLTVRI 181 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 DFP+Y H F K + N N + DG+ + +T A G+ + +A + Sbjct: 182 FEDFPEYYHLFSKKDFKYNNIYQENIN-LLSPDNRIDGIISIYTDAGGYGSIVAAKHEGR 240 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 + +I G R LL F + + + Sbjct: 241 RIFILISGLKTEKERISEIKQLLDYAFNDFSSQ 273 >gi|315121863|ref|YP_004062352.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495265|gb|ADR51864.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 357 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 145/276 (52%), Gaps = 13/276 (4%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN--YP---DHPWNPAS 55 +R I+ + ++ S A+ ++D + + D PAS Sbjct: 30 LRSLWKILLLCIILTSMALKSHAKLEY--SSIVIDL-----LNDKRTNGFKQDKLRYPAS 82 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LTK+MT Y++F L+ KK L T I +SK A+ PPS K+ + T++ + LI +S Sbjct: 83 LTKMMTLYIIFEHLQSKKMHLNTKIPVSKTATIQPPSKLYLKENTFFTVEQGILALITRS 142 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND++ A E + +EKKF M+N +K+LG++ T + NA G+ TTARD AIL Sbjct: 143 ANDVSTAFGEFISGSEKKFAILMSNKAKSLGMNHTTYKNASGLHDKNQKTTARDQAILGI 202 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 I+ +FPQY YF I+ + + K N N + G DG+KTG+T SGFNIVAS Sbjct: 203 TIRKNFPQYYKYFSIRKFQYRNKIILNHNKLINKIHGIDGIKTGYTRDSGFNIVASLQNE 262 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271 + S+IAV++G R++ + L++ F N K Sbjct: 263 NNSIIAVVMGMPTCQKRDQKALELIN-SFLNTKKTK 297 >gi|260892761|ref|YP_003238858.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] gi|260864902|gb|ACX52008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4] Length = 374 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 26/305 (8%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64 +I +L + + L++ +G E PASLTK+MT + Sbjct: 12 FLIFGCWLLGVVQVAWASPPEVTAEAAALMERQSGLFYYEKNATERRAPASLTKVMTCIL 71 Query: 65 VFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 ++ +T+S+ A+ + G + L +K ++ SAND VAI Sbjct: 72 ALEMADPEEV-----VTVSRRAAAISMGLVIDLRPGEQIKLRELIKAALIHSANDATVAI 126 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 AE++ FV+ MN + LGL THF+N +G H++TA+D+A L+ P Sbjct: 127 AEAVAGDHDTFVRWMNAKALLLGLEDTHFVNTNGYSHPEHWSTAKDLARLTRYALQ-NPT 185 Query: 184 YMHYFQIKGLEIKGKK------YPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGD 236 + + ++ +K NTN + G + G+KTG T A+G ++ASA G+ Sbjct: 186 FASLVATRQAVVRWEKPQRELPISNTNRLLHGGYPQVTGVKTGTTQAAGQCLIASARSGE 245 Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVP 290 Q +AV+L + + R + + +LLS G + K++N K Y L +VP Sbjct: 246 QEFVAVVLKSKN---RYRDAVALLSWG---SKELKEVNLCDKGEYWTRLPVAEGRLGDVP 299 Query: 291 NISEE 295 ++ E Sbjct: 300 LVARE 304 >gi|317057431|ref|YP_004105898.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] gi|315449700|gb|ADU23264.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus albus 7] Length = 382 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 19/277 (6%) Query: 6 VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 ++ + M+ + + AE+ + + +TG V+ E D P AS TK+M+A Sbjct: 13 AVLVLLMIFTLNTINAKAESKLQISAKAAIVYNGSTGEVLFEKNADEPLPMASTTKIMSA 72 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 +V + L T+ A S+ ++G ++L + +++ S ND A A Sbjct: 73 LIVLE-----QEDLDERFTVDSEAVNTEGSSMGLREGDEVSLRDLACGMLLPSGNDAANA 127 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTD 180 A + + + FV MN ++ LGL +THF+ G+ HY+TARDMA+L+ + Sbjct: 128 AAVRVAGSIENFVGMMNERAEKLGLESTHFVTPSGLDDYTDDHYSTARDMAVLA-AEAME 186 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASAIQG 235 + ++ ++++ P W + T G G+KTGFT + +V+S ++ Sbjct: 187 NQDFRDICGLQRVKLEFGCPPYERWLINTNKLLKNHGITGIKTGFTDKARRCLVSSCMRE 246 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 LI V L D K +L GF + K Sbjct: 247 GCELICVTLNDPDD---WKDHMALFDYGFSHVEQVKL 280 >gi|160892713|ref|ZP_02073503.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50] gi|156865754|gb|EDO59185.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50] Length = 451 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 28/289 (9%) Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89 LLD G V+ + + AS TK++T + + + +S A++ Sbjct: 87 SAILLDGKNGRVLYDKAGEEVRANASTTKILTCILALEYGDP-----DDIVIVSSYAAKM 141 Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149 P ++G L + L L+++S ND AVAIAE + + + F MN + +G + Sbjct: 142 PDVQLNIREGEEYRLKDLLYSLMLESHNDSAVAIAEYIGGSVEAFADLMNRKAIEVGCTN 201 Query: 150 THFMNAHGVVQHGHY----TTARDMAILSWRIKTDFP---QYMHYFQIKGLEI------K 196 THF+ +G+ Y TTA D+A + + P Q++ + + Sbjct: 202 THFITPNGLDAKDEYGIHGTTAEDLARIMRYCIRESPKREQFLAITRTATYSFTNVGGTR 261 Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRN 253 N N + GA KTGFT ++G+ V + + + LI +LG ++ + Sbjct: 262 SFSCSNHNAFLNMMDGALTGKTGFTGSAGYCYVGALERDGKILIVALLGCGWPGNKTYKW 321 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302 + L++ G N + + I++ N++P +S+ V T KE Sbjct: 322 ADTKKLMNYGLANYQEHVITDDILQ-------KNKIPVLSDSVYGTIKE 363 >gi|319898924|ref|YP_004159017.1| Penicillin-binding protein [Bartonella clarridgeiae 73] gi|319402888|emb|CBI76439.1| Penicillin-binding protein [Bartonella clarridgeiae 73] Length = 394 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 134/310 (43%), Gaps = 12/310 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M + L ++ + IF AE + D NT ++ + D + PASLTK Sbjct: 1 MHRLLRVLFSLIWILIFNEQGQAENFQTSASQLLIFDDNTSTILFKKQSDVAFFPASLTK 60 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113 LMTA +VF LK+ +S+NA + K+ + +++ + L+ L++ Sbjct: 61 LMTAEIVFHQLKKGFLNKEQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLVI 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 + ND A+ +AE + E F + MN +K LGL +HF+NA G + G + T DM L Sbjct: 121 VNGNDAAITLAEGIAGNEANFAKLMNKRAKTLGLLNSHFVNATGFPEEGQFITLNDMITL 180 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG--TFLGADGMKTGFTCASGFNIVAS 231 + I ++P Y + N N + T + +G+ G++ +GF+ V S Sbjct: 181 ARHIAHEYPDYYALYSEPDFTWNKITQHNKNPLISQVTDVKIEGLGFGYSEETGFSTVIS 240 Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNE 288 A + Q L + G + R K +L N +K K + + N Sbjct: 241 AYKNQQRLFLAVSGLQNNKERTKEIKRILQWSLTNFDLKKIFTKGEIVGYASVYGGVRNS 300 Query: 289 VPNISEEVCT 298 VP + +E + Sbjct: 301 VPLVVQEPIS 310 >gi|328543897|ref|YP_004304006.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum SL003B-26A1] gi|326413641|gb|ADZ70704.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum SL003B-26A1] Length = 393 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 11/289 (3%) Query: 18 PFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 P + A + L+D ++ V+ PD + P SL K+MTA VVF LK + Sbjct: 26 PAFAAAADVLETRARSAFLIDHSSRTVLYAKAPDEAFAPGSLAKVMTAAVVFDALKSGEV 85 Query: 75 MLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 T +S++A S S + + + L+ L+V +AND A+ +AE L Sbjct: 86 FEETLFKVSEHAWRTGGAPSRTSTMFAAVRSEIPVADLLRGLLVHNANDAAIVLAEGLAG 145 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 +E F Q M + +G+ ++ F N G G+ TTARDMA L+ I F Sbjct: 146 SETAFAQRMTALATRIGMISSRFANPTGFEDPGNRTTARDMARLAAYILDTHRTRYELFS 205 Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + N N +G G DG+ G + A G++ +AS + + +IAVI G Sbjct: 206 LPEFTWNRIFQRNKNPLLGEIRGLDGLGAGLSQADGYSGLASVERDGRRVIAVIAGLDTD 265 Query: 250 NTRNKVSASLLS--M-GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295 R L+ F + + + + VP ++++ Sbjct: 266 KMRLAALRDLVEGAWEAFQVQILFGRGEPVASARVYGGETGSVPLVAKD 314 >gi|218666161|ref|YP_002427291.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518374|gb|ACK78960.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 389 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 7/286 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A Sbjct: 48 AVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHAQ 107 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+ L++ ND AVAIA+++ + FV MN+ + +GL T Sbjct: 108 GSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQHT 167 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N G+ Q G +TA D+A LS R+ +P + N N G Sbjct: 168 HFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAGQ- 226 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+ + Sbjct: 227 ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQNL 286 Query: 271 K--KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 K ++ + S EV E TT+ +++ Q + + Sbjct: 287 PLYKAGQVVAQIRHVDWSPEV----VEGVTTRAVVVSEPKQQQGVR 328 >gi|198284618|ref|YP_002220939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249139|gb|ACH84732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 415 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 7/286 (2%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90 LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A Sbjct: 74 AVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHAQ 133 Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 S + +T+ L++ ND AVAIA+++ + FV MN+ + +GL T Sbjct: 134 GSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQHT 193 Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210 HF N G+ Q G +TA D+A LS R+ +P + N N G Sbjct: 194 HFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAGQ- 252 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 +G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+ + Sbjct: 253 ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQNL 312 Query: 271 K--KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 K ++ + S EV E TT+ +++ Q + + Sbjct: 313 PLYKAGQVVAQIRHVDWSPEV----VEGVTTRAVVVSEPKQQQGVR 354 >gi|312876048|ref|ZP_07736037.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor lactoaceticus 6A] gi|311797246|gb|EFR13586.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor lactoaceticus 6A] Length = 451 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 37/302 (12%) Query: 1 MRQFL--VIIAMAMLSNIF------PFLSIAETNK-------LPYYTLLDTNTGHVIAEN 45 M QFL ++ + L+ F PF + ++ L++ +TG ++ E Sbjct: 1 MSQFLKKAVLCLTSLALFFVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMT 103 P+ PAS TK++TA V S+ + L+ +S A+ P S+ G T++ Sbjct: 61 NPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMIEPGSSSYYLNPGETIS 116 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L +++ SAND A IAE++ + +FV+ MN +K++G +HF+N +G+ H Sbjct: 117 FQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAKNSHFVNPNGLHSPQH 176 Query: 164 YTTARDMAILSWRI--------KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----GTF 210 YTTA D+++++ + +Y + + N N + + Sbjct: 177 YTTAYDLSLIARQAYQNEILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYYY 236 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 A G+KTG+T + ++ASA + D LIAVIL + D + L GF N Sbjct: 237 PYATGIKTGYTAQAKRCLIASAKKNDIELIAVILSSEDA---FSDAIKLFDYGFNNFKRE 293 Query: 271 KK 272 K Sbjct: 294 KL 295 >gi|206975818|ref|ZP_03236729.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus H3081.97] gi|217962879|ref|YP_002341457.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH187] gi|206745912|gb|EDZ57308.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus H3081.97] gi|217067221|gb|ACJ81471.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH187] Length = 423 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 159/378 (42%), Gaps = 50/378 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKIFSILLVFLLSISSLVVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + +S A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 178 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 354 Query: 317 ESHFIDFEKITLLKNKIT 334 + H I K IT Sbjct: 355 DGHLIAPIKKDAKVGSIT 372 >gi|111657944|ref|ZP_01408652.1| hypothetical protein SpneT_02000863 [Streptococcus pneumoniae TIGR4] gi|149007183|ref|ZP_01830847.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP18-BS74] gi|147761221|gb|EDK68188.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP18-BS74] Length = 406 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 33/356 (9%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+ Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60 Query: 67 SFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 L+ L+TP+ IS + SN + T++ L+ +V SAN A+A Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSSANSAAIA 119 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTAR 168 +AE + +EK FV M G+ +N G+ + +A Sbjct: 120 LAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAY 179 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCAS 224 D+AI++ + +PQ + + G +TN+ + G DG+KTG T + Sbjct: 180 DVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKA 239 Query: 225 GFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI---- 276 G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 GESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQ 299 Query: 277 -IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 K Q + V ++ E++ ++ + ++ D ++ E T++ Sbjct: 300 DSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVG 355 >gi|262172042|ref|ZP_06039720.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] gi|261893118|gb|EEY39104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451] Length = 317 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 4/210 (1%) Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 ++ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D Sbjct: 61 VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ L Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +AV++G + N R S LLS GF Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFET 210 >gi|262165190|ref|ZP_06032927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] gi|262024906|gb|EEY43574.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223] Length = 317 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 4/210 (1%) Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 ++ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D Sbjct: 61 VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ L Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +AV++G + N R S LLS GF Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFET 210 >gi|332076153|gb|EGI86619.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae GA41301] Length = 406 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 33/356 (9%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+ Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60 Query: 67 SFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 L+ L+TP+ IS + SN + T++ L+ +V SAN A+A Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSSANSAAIA 119 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTAR 168 +AE + +EK FV M G+ +N G+ + +A Sbjct: 120 LAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAY 179 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCAS 224 D+AI++ + +PQ + + G +TN+ + G DG+KTG T + Sbjct: 180 DVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKA 239 Query: 225 GFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI---- 276 G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 GESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQ 299 Query: 277 -IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 K Q + V ++ E++ ++ + ++ D ++ E T++ Sbjct: 300 DSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVG 355 >gi|146296825|ref|YP_001180596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410401|gb|ABP67405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 452 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 155/346 (44%), Gaps = 34/346 (9%) Query: 5 LVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 + ++ +L P S E+N L++ NTG ++ + P+ PAS TK Sbjct: 15 IALLIFLILFIPVPVYSKEESNTLLSDINAKSAILIEANTGQILFQKNPNSRCFPASTTK 74 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116 ++TA V K+ L +SKNA P S+ +G T++ +AL +++ SA Sbjct: 75 ILTALVAL----SKEKDLDKLFKVSKNAIMIEPGSSSYYLNEGETISFQDALYAMLLISA 130 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A IAE++ + ++FV+ MN ++N+G +HF+N G+ HYTTA D+++++ + Sbjct: 131 NDAANVIAENISGSIQEFVKEMNQFAQNIGAKDSHFVNPSGLHNPQHYTTAYDLSLIARQ 190 Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP---------NTNWAV-----GTFLGADGMKTGFTC 222 +I N N + + A+GMKTG+T Sbjct: 191 AYK-NETLRKIVSTVEYKITTASMHKKPDWQIIYNINKLLRKNSKYYYPYANGMKTGYTA 249 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282 + ++ASA + D LIAVIL + D + LL GF N RK+ + Sbjct: 250 QAKRCLIASAKKDDIDLIAVILSSDDA---FADAIKLLDYGFNNF--RKEELFKQNQIIG 304 Query: 283 QNLSNEVPN--ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 + + ++V I + ++ + N NT ++ + + D + Sbjct: 305 KVMVDKVNKKWIDGYIKSSFYVLKNQNTNSEDITYRITFLKDIKPP 350 >gi|149184554|ref|ZP_01862872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21] gi|148831874|gb|EDL50307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21] Length = 388 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 12/280 (4%) Query: 5 LVIIAMAMLSNIFPFLS-------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57 LV +A + P ++ E + P L D +G V+ E D + PAS+T Sbjct: 8 LVAFCVAATAVCVPAVAQKAERSVPPEADVAPIAFLFDLTSGQVLFEREADRRFMPASIT 67 Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 K+MT ++ F +++E K + TI A S + +T+D+ + + Sbjct: 68 KVMTTFLAFEWMEEGKIVPAQSFTIKPEVWRAWNNVGSTMFLPHDARVTVDDLVHGVTTV 127 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173 SAND A A+A+ + +++V MN+ + +G++ +HF +G + G + TARD+ L Sbjct: 128 SANDGAAALADGAAGSIEEWVAAMNSKASEIGMADSHFGTPNGWMDDGRTFVTARDLTTL 187 Query: 174 SWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + P +Y H+ PN + G GADG+KTGFT +G+ + SA Sbjct: 188 ATAMIRRHPTKYRHFIGQPAFTYNNITQPNHDPISGVVPGADGIKTGFTNQAGYGFLGSA 247 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272 + + L+ V+ + R++ + +L+ GF + Sbjct: 248 ERNGRRLVMVVAASPRARDRDRAARNLIEWGFGAFEQYRL 287 >gi|222098861|ref|YP_002532919.1| d-alanyl-d-alanine carboxypeptidase, putative [Bacillus cereus Q1] gi|221242920|gb|ACM15630.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus Q1] Length = 423 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 159/378 (42%), Gaps = 50/378 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKIFSILLVFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + +S A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 178 EGTNPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 354 Query: 317 ESHFIDFEKITLLKNKIT 334 + H I K IT Sbjct: 355 DGHLIAPIKKDAKVGSIT 372 >gi|324329337|gb|ADY24597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 423 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 50/365 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKIFSILLVFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 178 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 354 Query: 317 ESHFI 321 + H + Sbjct: 355 DGHLV 359 >gi|225871200|ref|YP_002747147.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] gi|225700604|emb|CAW95134.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi 4047] Length = 411 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 33/362 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ +V +A M + + ++ TG ++ ASLTKL+ Sbjct: 1 MKKLIVTLAALMCLITNTSFAENFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T Y+V +K + + +T+S+ A + P ++ + T+ ++ ++ SAN Sbjct: 61 TVYLVLKEIKAGRLQWDSQVTLSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163 AVA+AE + +E FV M + G+ +NA G+ + Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYLLVNASGLNNSMLKGHLYPGSQPDDEN 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219 TARD+A+++ ++ DFP+ + L+ K P++N + G DG+KTG Sbjct: 181 QMTARDLALIAQQLIQDFPELLTISSQPQLKWGEKALPSSNLLLAGREMGRAGVDGLKTG 240 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275 T +G ++A+A+Q + +I+VIL A D R + LL F + K + Sbjct: 241 TTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYALEKLVAQ 300 Query: 276 --------IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 I+K +Q L + V + ++Y+ ++K+ K + + T Sbjct: 301 NQVLPERLIVKQAAKQRLRVKASQTLTVVRPKDQTELSYSLRIKDKALKAPIRQNKKVGT 360 Query: 328 LL 329 L+ Sbjct: 361 LI 362 >gi|148988291|ref|ZP_01819738.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP6-BS73] gi|147925972|gb|EDK77046.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP6-BS73] Length = 406 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 142/356 (39%), Gaps = 33/356 (9%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+ Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60 Query: 67 SFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 L+ L+TP+ IS + SN + T++ L+ +V SAN A+A Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSSANSAAIA 119 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTAR 168 +AE + +EK FV M G+ +N G+ + +A Sbjct: 120 LAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAY 179 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCAS 224 D+AI++ + +PQ + + G +TN+ + G DG+KTG T + Sbjct: 180 DVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKA 239 Query: 225 GFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI---- 276 G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 GESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQ 299 Query: 277 --IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 + E++ ++ + ++ D ++ E T++ Sbjct: 300 DSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVG 355 >gi|16077078|ref|NP_387891.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. subtilis str. 168] gi|221307819|ref|ZP_03589666.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. 168] gi|221312141|ref|ZP_03593946.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317074|ref|ZP_03598368.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. JH642] gi|221321337|ref|ZP_03602631.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. SMY] gi|585034|sp|P08750|DACA_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA; Short=CPase; Short=DD-carboxypeptidase; Short=DD-peptidase; AltName: Full=Penicillin-binding protein 5; Short=PBP-5; Flags: Precursor gi|467400|dbj|BAA05246.1| D-alanine carboxypeptidase (PBP-5) [Bacillus subtilis] gi|2632277|emb|CAB11786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Bacillus subtilis subsp. subtilis str. 168] Length = 443 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 149/368 (40%), Gaps = 33/368 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M ++ +A+ L+ + + ++ +++ ++G ++ D AS+TK Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVK 114 +MT Y++ + + K T E SN +K T+ + + Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------- 164 SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ HGH Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLG--- 212 +A+DMA+L+ + TD+P+ + I + + PN N+ + + Sbjct: 191 EESEVSAKDMAVLADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250 Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267 DG+KTG T ++G +A + +I V+L A R + + F N Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNF 310 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + ++ + + +S + E T K +E K ++ + +T Sbjct: 311 SMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370 Query: 328 LLKNKITK 335 K TK Sbjct: 371 APVKKGTK 378 >gi|225575599|ref|ZP_03784209.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM 10507] gi|225037193|gb|EEG47439.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM 10507] Length = 423 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 21/258 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + L+D NTG ++ PAS+TK+MT + + +T S Sbjct: 71 PKVEAGSAVLMDANTGAILYSKNAHKKLYPASITKIMTTALAMQ-----RCNPDDTVTFS 125 Query: 84 KNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A + SN G M + + + +++ SAN++A AIAE C K FV+ MN Sbjct: 126 DYAITHQDVDSSNIGCLVGEQMKVSDCYRAIMLASANEVATAIAEQSCGNLKNFVELMNQ 185 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----- 195 T++ +G + THF NA+G+ HYTTA DMA+++ + Q+ I Sbjct: 186 TARQIGCTRTHFNNANGLPDKHHYTTAHDMALIARYAWKNT-QFRKVATTLEYTIEPTNL 244 Query: 196 --KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + + N + + + G G KTG+T A+G +V A +G +LI V+L Sbjct: 245 YTEPRVLYNHHKMMSNTGYYYEGCLGGKTGYTQAAGNTLVTYAKRGHMTLICVVLQDEGT 304 Query: 250 NTRNKVSASLLSMGFYNK 267 T +A+L GF N Sbjct: 305 YT-YTDTAALFDYGFNNF 321 >gi|195978797|ref|YP_002124041.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975502|gb|ACG63028.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 411 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 154/362 (42%), Gaps = 33/362 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ +V +A M L+ + ++ TG ++ ASLTKL+ Sbjct: 1 MKKLIVTLAALMCLITNTSLAEDFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T Y+V +K + + + +S+ A + P ++ + T+ ++ ++ SAN Sbjct: 61 TVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163 AVA+AE + +E FV M + G+ +NA G+ + Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDEN 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219 TARD+A+++ ++ DFP+ + L+ K PN+N + G DG+KTG Sbjct: 181 QMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKDLPNSNLLLAGREMARTGVDGLKTG 240 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275 T +G ++A+A+Q + +I+VIL A D R + LL F + T K + Sbjct: 241 TTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYTLEKLVAQ 300 Query: 276 --------IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 I+K +Q L + V + ++Y+ ++K+ K + + T Sbjct: 301 NQVLPERLIVKQAAKQRLRVKANQSLMVVRPKDQTQLSYSLRIKDKVLKTPIRQNKKVGT 360 Query: 328 LL 329 L+ Sbjct: 361 LI 362 >gi|229142132|ref|ZP_04270657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] gi|228641421|gb|EEK97727.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26] Length = 425 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 159/378 (42%), Gaps = 50/378 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 3 MKKIFSILLVFLLSISSLVVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + +S A E SN F+KG T+ Sbjct: 60 IASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELY 119 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 120 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 179 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 180 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 239 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 240 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 299 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 300 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 356 Query: 317 ESHFIDFEKITLLKNKIT 334 + H I K IT Sbjct: 357 DGHLIAPIKKDAKVGSIT 374 >gi|15675077|ref|NP_269251.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes M1 GAS] gi|13622233|gb|AAK33972.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes M1 GAS] Length = 411 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 29/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 2 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 61 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 62 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 121 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALE 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+AI++ + DFP+ + + ++ G + N + G DG+ Sbjct: 181 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 240 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ LI VIL A ++NTR + + LL RK Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKI 300 Query: 273 I 273 + Sbjct: 301 L 301 >gi|302385725|ref|YP_003821547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302196353|gb|ADL03924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 439 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 30/321 (9%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D +TG ++ D AS TK+MT + + L+ +T S+NAS Sbjct: 59 AQSAVLMDASTGRILYGKNEDIARPMASTTKIMTCILALEY-----GNLSDTVTASQNAS 113 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P + KG T L + L L+++S ND A+ IAE + +++ F MN +++LG Sbjct: 114 SQPKVHLGVYKGETFLLKDLLYSLMLESHNDAAMMIAEHIGGSQEGFAGLMNQKARDLGC 173 Query: 148 SATHFMNAHGVVQ--------HGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEI- 195 + T+F+ +G+ H TTA D+A + P +++ K Sbjct: 174 TDTYFITPNGLDAREEKDGQVKEHSTTAADLARIMNYCIGQSPKKKEFLEITGTKSYSFT 233 Query: 196 -----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---L 247 + N N + GA KTGFT +G++ V +A + +LG Sbjct: 234 DLEGKRSYSCNNHNTLLAMMNGAFSGKTGFTGGAGYSYVGAAQDNGRIYTIALLGCGWPP 293 Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307 + + + L G R + KD ++ + I + ++ Sbjct: 294 HKAYKWSDARKLFQYGMERFHYRN----VYKDLSLPDIPVK-EGIPASGRLDEPVTVSCI 348 Query: 308 TQMKEAKDKESHFIDFEKITL 328 +E KD D E++T+ Sbjct: 349 IGGEEEKDLTLLLADEEEVTV 369 >gi|331003847|ref|ZP_08327339.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412039|gb|EGG91436.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon 107 str. F0167] Length = 455 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 144/338 (42%), Gaps = 29/338 (8%) Query: 6 VIIAMAMLSN-----IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++++ M+S + +I K + + NTG + E D + PAS+TK+M Sbjct: 13 ILLSIGMISFSSEYAMVTHAAIPPDIKSQGAAVYNANTGEFLYEKNGDRQFYPASITKIM 72 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T +V +A L + S+ A+ E + +G M++ +AL ++ SAN Sbjct: 73 TTLIVLE-----QANLNDTVVFSRAATTNLEAGATRLGVSEGDKMSVRDALYGTMLASAN 127 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 +++ +AE + + F MN ++ +G + T+F+N G+ H TTA+DMA ++ Sbjct: 128 EVSNGLAEYVGGSIAGFSSMMNARAREIGATNTNFVNPSGLNNQNHVTTAKDMARIAAEA 187 Query: 178 KTDFPQYMHYFQIKGLEIKGKK-------YPNTNWAVG---TFLGADGMKTGFTCASGFN 227 P + K K + V + G G KTG+T ++G Sbjct: 188 FR-NPDFRVIAGTKVYNFPAIKTKAEVTPIKMHHRMVNGSDNYPGVIGGKTGYTRSAGNT 246 Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 +V A + LI V+L + T + +LL GF T +N KD +N Sbjct: 247 LVTCAERNGVRLIVVVLKSPS--THYADTRALLDYGFEVATTGG-VNISSKDTGAKNAVV 303 Query: 288 EVPNISEEVC--TTQKEIINYNTQMKEAKDKESHFIDF 323 + ++ V T+Q ++ ++ +A K D Sbjct: 304 KAKQETKAVVESTSQAQVAIADSAKVDAAPKSISTSDI 341 >gi|94988566|ref|YP_596667.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|94992388|ref|YP_600487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS2096] gi|94542074|gb|ABF32123.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS9429] gi|94545896|gb|ABF35943.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS2096] Length = 451 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 136/290 (46%), Gaps = 29/290 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 160 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 161 SSNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSTLE 220 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ + DFP+ + + + G + N + G DG+ Sbjct: 221 EENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 280 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSM 262 KTG T +G +V ++I+ +I VIL A ++NTR + + LL Sbjct: 281 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY 330 >gi|229917441|ref|YP_002886087.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] gi|229468870|gb|ACQ70642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Exiguobacterium sp. AT1b] Length = 415 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 127/282 (45%), Gaps = 16/282 (5%) Query: 2 RQFLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 R F++++ + + + A L+D TG V+ D PAS+TK Sbjct: 4 RYFIILLTVVFVIQTMLPSAASAAAPKVDAASAMLVDVTTGQVLFAKQEDSMLQPASITK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 LMTA++ ++ K T IT S A + P T+ +++S Sbjct: 64 LMTAFLTREAIEAGKLSWTQEITPSDAALALTRKPGLARIPLLNKPYTVKELYDAALIRS 123 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------GHYTTARD 169 AN+ AV + E++ +E+ FV+ MN + LG++ T F NA G+ + T+A+D Sbjct: 124 ANEAAVTLGEAVSGSEEAFVKEMNRRADELGMTQTTFANASGLDSESAGLPGDNLTSAKD 183 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASG 225 + L+ T +P+ + + +++ G ++ TN + + G G KTG T +G Sbjct: 184 LMKLAIAYLTTYPEVLDVTKRAYVDVDGVRFDATNRMLANRDLAYPGMLGFKTGTTNEAG 243 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + + + + +++++V+LGA R + +L + + Sbjct: 244 YCFIGVSTRDGRTVLSVVLGATSDEGRYAATKALHDYAYADF 285 >gi|229020609|ref|ZP_04177345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] gi|228740670|gb|EEL90932.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273] Length = 425 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 152/353 (43%), Gaps = 42/353 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ L I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 3 MKKILSILLVFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 59 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 60 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 119 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 120 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 179 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS I T +P+ + + + K + N NW + Sbjct: 180 EGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 239 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G+DG+KTG + +G+ +A +GD LI+VI+ + R S +L+ GF Sbjct: 240 AAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRALIEYGFN 299 Query: 266 NKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314 N +K K N I +++ P V T + Y + K Sbjct: 300 NFEKQKLKVDKNNKISVVKGKEDYVTVAPEKEVIVVTAKGNKAPYKISTEADK 352 >gi|148984605|ref|ZP_01817873.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP3-BS71] gi|147922996|gb|EDK74111.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae SP3-BS71] Length = 406 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 33/356 (9%) Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66 ++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+ Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60 Query: 67 SFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 L+ L+TP+ IS + SN + T++ L+ +V SAN A+A Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA-RNYTVEELLEATLVSSANSAAIA 119 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTAR 168 +AE + +EK FV M G+ +N G+ + +A Sbjct: 120 LAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAY 179 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCAS 224 D+AI++ + +PQ + + G +TN+ + G DG+KTG T + Sbjct: 180 DVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKA 239 Query: 225 GFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI---- 276 G + V + ++ +I V+L A + R ++SL+ T RK + Sbjct: 240 GESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQ 299 Query: 277 -IKDFYQQNLSNEVPNIS-EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 K Q + V ++ E++ ++ + ++ D ++ E T++ Sbjct: 300 DSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEARTVVG 355 >gi|321313677|ref|YP_004205964.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] gi|320019951|gb|ADV94937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5] Length = 443 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 149/368 (40%), Gaps = 33/368 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M ++ +A+ L+ + + ++ +++ ++G ++ D AS+TK Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVK 114 +MT Y++ + + K T E SN +K T+ + + Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------- 164 SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ HGH Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLG--- 212 +A+DMAIL+ + TD+P+ + I + + PN N+ + + Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250 Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267 DG+KTG T ++G +A + +I V+L A R + + F N Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNF 310 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + ++ + + +S + E T K +E K ++ + +T Sbjct: 311 SMKEIYAEGDQVKDHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370 Query: 328 LLKNKITK 335 K TK Sbjct: 371 APVKKGTK 378 >gi|228911227|ref|ZP_04075032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] gi|228848403|gb|EEM93252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 200] Length = 423 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 44/375 (11%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ L I+ + +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKILSILLLFVLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------ 162 +++ SAN ++A+AE L +EK F+ N +K LGL F+N+ G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNSTGLNNADLKGKHP 177 Query: 163 --------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM IL+ I T +P+ + + + K + N NW + Sbjct: 178 EGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 ++ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRK-KINYIIKDFYQQNLSNEVPNISEEVCT-----TQKEIINYNTQMKEAKDKESH 319 N +K K+N + ++V E+ T KE T++ ++ ++ H Sbjct: 298 NFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPYKIGTELDKSLAEDGH 357 Query: 320 FIDFEKITLLKNKIT 334 + K IT Sbjct: 358 LVAPVKKDTKVGSIT 372 >gi|71910630|ref|YP_282180.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] gi|71853412|gb|AAZ51435.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS5005] Length = 442 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 29/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 33 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 92 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 93 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 151 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 152 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALE 211 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+AI++ + DFP+ + + ++ G + N + G DG+ Sbjct: 212 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 271 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ LI VIL A ++NTR + + LL RK Sbjct: 272 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKI 331 Query: 273 I 273 + Sbjct: 332 L 332 >gi|296332949|ref|ZP_06875407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672708|ref|YP_003864379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149913|gb|EFG90804.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410951|gb|ADM36069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 443 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 33/368 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M ++ +A+ L+ + + ++ +++ ++G ++ D AS+TK Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVK 114 +MT Y++ + + K T E SN +K T+ + + Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------- 164 SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ HGH Sbjct: 131 SANAAAIAIAEVVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVD 190 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLG--- 212 +A+DMAIL+ + TD+P+ + I + + PN N+ + + Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250 Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267 DG+KTG T ++G +A +I V+L A R + + F N Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAELNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFNNF 310 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + ++ + + +S + E T K +E K ++ E +T Sbjct: 311 SMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKETLT 370 Query: 328 LLKNKITK 335 K TK Sbjct: 371 APVKKGTK 378 >gi|300853932|ref|YP_003778916.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM 13528] gi|300434047|gb|ADK13814.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium ljungdahlii DSM 13528] Length = 408 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 88/363 (24%), Positives = 148/363 (40%), Gaps = 37/363 (10%) Query: 1 MRQFLVIIAMAMLSN------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54 M++ + + +L + + +LD TG ++ PD + PA Sbjct: 1 MKRIVTFALLFLLICSNNPYGVVHAKEMPPPVSADGAVILDAATGQLLYSKNPDTAYPPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TK+MTA + L + I KN + +G +T+ + L L++ Sbjct: 61 STTKIMTALLTLE-----NTNLNDKVIIGKNPPNVDGTRVGLCEGEQLTVKDLLYGLLLA 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A A+AE + T KFV MN +K LG T+F+N G+ H T+ARD+A++ Sbjct: 116 SDNDCAEALAEHIGGTMDKFVVKMNKRAKELGAKNTNFVNPTGLFDESHKTSARDLALMM 175 Query: 175 WRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAV-----GTFLGADGMKTGFTC 222 + P+Y I ++ N N + + G G KTG+T Sbjct: 176 RALSK-HPEYSKIATTISYTIPATNKSPQPREVWNENKLIQKQSTYYYSGCLGGKTGYTV 234 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDF 280 S + V++A + Q LI ++ ++ T + SL + GF N T K + ++ + Sbjct: 235 QSFHSYVSTATRNGQQLIVALIHDKNK-TFFPDAVSLFNFGFNNFTFTKLYQKGALVTTY 293 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD--------KESHFIDFEKITLLKNK 332 + LS +P I+ K + N KD K+ +D I+ + Sbjct: 294 NKDGLS--IPLIAAYDFYYIKPKDDTNVPQVTLKDKNLMFRFFKKGDIVDEASISFEGKE 351 Query: 333 ITK 335 I K Sbjct: 352 IGK 354 >gi|291537069|emb|CBL10181.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 468 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 110/275 (40%), Gaps = 24/275 (8%) Query: 11 AMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 +M ++ E ++ P +++ +TG V+ + PAS+TK+MT + Sbjct: 27 SMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALE- 85 Query: 69 LKEKKAMLTTPITISKNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 + L +T S A S G MT++ L +++ SAN+ A A+AE + Sbjct: 86 ----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHV 141 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 T + FV MN +K LG THF N HG+ HYT DMA+++ + Sbjct: 142 GGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARA-AYQNETFRII 200 Query: 188 FQIKGLEIKGKKYP-------NTNWAVGT-------FLGADGMKTGFTCASGFNIVASAI 233 I N N + + G G KTG+T A+ +V A Sbjct: 201 VGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAE 260 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + +LI V++ N S +L F N Sbjct: 261 RDGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQ 294 >gi|325478993|gb|EGC82094.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii ACS-065-V-Col13] Length = 403 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 22/295 (7%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53 R+F + +++ +F ++ A+ + Y + + TG + E D Sbjct: 4 RKFRLASLLSIFIFLFTSMAYAKGEGRIVGLDENVSAYLIGNEETGDIYYEKNADEVRPI 63 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKL 110 ASLTKLMT Y+V ++E K L T + K A + + S+ K+ T +++ L+ Sbjct: 64 ASLTKLMTFYLVRDAIEEGKISLDTNVKADKRAEELTSWEYSSLGLKENETYSVEELLQG 123 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHGHYTTA 167 LI S ND A +A+++ +E+ F + MN +K LGL + + NA G+ + ++A Sbjct: 124 LIAVSGNDCAHLLAKAVSGSEEAFTKKMNEKAKELGLESQKYYNASGIDTEDDKENVSSA 183 Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASG 225 RD+ LS + +P ++Y + + I KG K +T G DG+KTG T +G Sbjct: 184 RDLYKLSMDLVKKYPDILNYSSMDEVNIPGKGIKKDSTIPLKNEIDGVDGLKTGTTEKAG 243 Query: 226 FNIVASAI------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 + ++ + D + V+LGA +++ R+ V + L+ + K ++ Sbjct: 244 YCLITTLDMKELDGNDDFRCLGVVLGADEKDIRDSVMSDLIYYVSRYYSCEKVLD 298 >gi|317133056|ref|YP_004092370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] gi|315471035|gb|ADU27639.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens harbinense YUAN-3] Length = 389 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 120/283 (42%), Gaps = 15/283 (5%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 R++ +A +L + A Y L++ TG VIA AS TK+MT Sbjct: 3 RKWAACLAAVLLFVTVGPSARAAAVSARAYALVEQTTGRVIAGADMGERLPMASTTKIMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 + + L T+ A S+ + ++TL + L+++S ND A Sbjct: 63 GLLACESGE-----LDKTFTVPPEALTVEGSSMGLQPDESITLRALVYGLLLESGNDAAN 117 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 +IA L + + F MN ++ L L+ THF N G+ GHYTTA D+A L Sbjct: 118 SIAMLLGGSVEGFAAQMNAKARALHLNDTHFANPSGLGADGHYTTALDLARLG-AYAMKN 176 Query: 182 PQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + + + + N N +G++ G G+KTGFT SG +V+ A +G Sbjct: 177 PDFAQIVGTRRATVSYNGIANARTLINHNRLLGSYDGEIGIKTGFTKKSGRCLVSCARRG 236 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278 +L+ L D + A+LL GF R + ++ Sbjct: 237 GVTLVLATLNDPDD---WRDHAALLDQGFSELQARPLLAAPVE 276 >gi|225181453|ref|ZP_03734896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] gi|225167851|gb|EEG76659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus AHT 1] Length = 406 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 12/276 (4%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 +F VII + +L + L+++ TG V+ E PAS+TK++T Sbjct: 5 KFRVIITVVVLLFYTGTAMAEPVVQSTAAILINSRTGEVLWEKNSHQQMFPASITKILTT 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122 ++ E S+ A + S+ ++G +T+++ L L+++SAND +V Sbjct: 65 ILLLENAAE-----DEVAVASELAEKTRGSSLYLRRGQELTVEDLLYALMLRSANDGSVV 119 Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182 AE + + F Q MN ++ G + F N HG+ H TTA DMA+++ R Sbjct: 120 AAELVSGSVDSFAQLMNQKARQAGAINSTFTNPHGLPDENHLTTAYDMAMIT-RYAMQNQ 178 Query: 183 QYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 ++ + I + N + T+ G G+KTG+T +G V +A + Sbjct: 179 RFRDLAATQRHTIVWPEGEDSYLINRIPLLSTYEGMLGIKTGYTTPAGRTFVGAAQRDGL 238 Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273 LI V+L A N + +LL GF N T + + Sbjct: 239 ELITVVLQA-SGNELWDDTVALLDYGFDNFTMVQPV 273 >gi|228988616|ref|ZP_04148702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771067|gb|EEM19547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 423 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 159/378 (42%), Gaps = 50/378 (13%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52 M++ L I+ +LS ++ + + + ++ TG ++ E PD Sbjct: 1 MKKILSILLAFLLSISSLGVTTSHAEEKIH---IEAAAALLFDADTGKILHEQNPDELLA 57 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNAL 108 AS++KL+ Y V +KE K T + IS A E SN F+KG T+ Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158 +++ SAN ++A+AE L +EK F+ N +K LGL F+NA G+ Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177 Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV-- 207 + +ARDM ILS + T +P+ + + + K + N NW + Sbjct: 178 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237 Query: 208 --GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 + G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297 Query: 266 NKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316 N +K + +D E+ I+++ K+ T++ ++ + Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKK---GSKDPYKIGTEVDKSLAE 354 Query: 317 ESHFIDFEKITLLKNKIT 334 + H + K IT Sbjct: 355 DGHLVAPIKKDAKVGSIT 372 >gi|163868321|ref|YP_001609530.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] gi|161017977|emb|CAK01535.1| penicillin-binding protein [Bartonella tribocorum CIP 105476] Length = 387 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 13/340 (3%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + L+ + + N + + LLD NT ++ E + PASL KLMTA Sbjct: 6 RILLSLWGILAFNTW-GRAQDFQISASQVLLLDDNTETILYEKQECTSFFPASLVKLMTA 64 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAN 117 VVF LKE T +S+NA + K + + + + L+ LI+ + N Sbjct: 65 EVVFHQLKEGLLKNTQKFKVSENAWRKGGAPSGTTTMFAKIKTEINISDLLRGLIIVNGN 124 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177 D A+ +AE + E F Q MN +K +GLS +HF+NA G+ + G + TARDM IL+ I Sbjct: 125 DAAIILAEGISGDEDHFAQLMNQRAKIIGLSQSHFVNATGLPEEGQFVTARDMIILARHI 184 Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237 ++P Y ++ N N + +G +G +G++ GF++VA+ + + Sbjct: 185 VQEYPDYYALYREPHFTWNNIFQRNKNPLIFKEIGVEGFGSGYSEKEGFSMVATIYKNHR 244 Query: 238 SLIAVILGALDRNTRNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294 L I G D +L G F KT K + N VP I + Sbjct: 245 RLFLAINGLQDGKKHTTEIERILQWGITAFDLKTIFTKGERVGLASVYGGKKNFVPLIVK 304 Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 + + + N + K K + + + + Sbjct: 305 KPIS----FMLSNEKGVNVKAKIKYHGPLKAPIVSGQSVG 340 >gi|262402708|ref|ZP_06079269.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] gi|262351490|gb|EEZ00623.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586] Length = 317 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 4/210 (1%) Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120 ++ +K L + ISKNA S + G+T+ + + + +I++S ND Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDAC 60 Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D Sbjct: 61 VAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDNPDLYSTPYDLALLGQALIRD 120 Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239 P+ + + G N N + + DG+KTG T +G+N+V+SA +G+ L Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180 Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTD 269 +AV++G + N R S LLS GF Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFET 210 >gi|229014554|ref|ZP_04171670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] gi|228746706|gb|EEL96593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048] Length = 425 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 31/308 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195 NA G+ + +ARDM ILS I T +P+ + + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224 Query: 196 -KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW + ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYNKTDRK-KINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINY 306 R S +L+ GF N +K KI+ K + + V E+ V T + Y Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344 Query: 307 NTQMKEAK 314 + K Sbjct: 345 KISTEADK 352 >gi|240144614|ref|ZP_04743215.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257203330|gb|EEV01615.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 468 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 110/275 (40%), Gaps = 24/275 (8%) Query: 11 AMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68 +M ++ E ++ P +++ +TG V+ + PAS+TK+MT + Sbjct: 27 SMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALE- 85 Query: 69 LKEKKAMLTTPITISKNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 + L +T S A S G MT++ L +++ SAN+ A A+AE + Sbjct: 86 ----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHV 141 Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187 T + FV MN +K LG THF N HG+ HYT DMA+++ + Sbjct: 142 GGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARA-AYQNETFRII 200 Query: 188 FQIKGLEIKGKKYP-------NTNWAVGT-------FLGADGMKTGFTCASGFNIVASAI 233 I N N + + G G KTG+T A+ +V A Sbjct: 201 VGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAE 260 Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 + +LI V++ N S +L F N Sbjct: 261 RDGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQ 294 >gi|89896454|ref|YP_519941.1| hypothetical protein DSY3708 [Desulfitobacterium hafniense Y51] gi|89335902|dbj|BAE85497.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 428 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 21/280 (7%) Query: 5 LVIIAMAMLSNIF-PFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++ A+AML N P + +P L+D TG + PDHP+ PAS TK Sbjct: 11 VLFTALAMLLNFAVPVFGSPDKVPVPEISSEGAILIDITTGQTLFAKNPDHPYEPASTTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKS 115 +M+A + K L +T + + + + G +TL+N L L++ S Sbjct: 71 IMSALIALE-----KGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYALLLNS 125 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 AND AVAIAE + + F MN +K +G T F N G+ GH TTARD+A+++ Sbjct: 126 ANDAAVAIAEHIGGDIQGFTDLMNAKAKEIGALNTSFKNPSGLSADGHLTTARDLAMIA- 184 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 R P + Y + K I + N N + T GMKTG+T ++G V Sbjct: 185 RFAYQNPVFRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTSSAGNTYV 244 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 A+A + ++L+ V+L + + + L GF N + Sbjct: 245 ATAERDGRALLGVVLKSPSKTSIYTDMRKLFEYGFTNFEN 284 >gi|319939695|ref|ZP_08014054.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] gi|319811284|gb|EFW07590.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus 1_2_62CV] Length = 415 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 151/366 (41%), Gaps = 34/366 (9%) Query: 1 MRQFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++F++ + +L + P L+ + +D TG ++ E + P AS+TKL Sbjct: 3 MKKFIITLVTTLLIFLAPTVLADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITKL 62 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +TAY+V+ + + K L T + IS SN + T++ L+ ++ S Sbjct: 63 LTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNSDASNVPLEA-RKYTVEELLETSLIAS 121 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------- 160 AN A+A+AE + +EKKFV M + G+ T +NA G+ Sbjct: 122 ANSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKGTTIINASGLNNSVLGEEHIYPSSGKE 181 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216 + +A D+AI++ R+ D+P+ + Q G ++N + G DG+ Sbjct: 182 DENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLENMPAFRAGVDGL 241 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSM---GFYNKTD 269 KTG + G + V + Q LI V+L D N R ++ ++ F +T Sbjct: 242 KTGSSDKGGSSFVGTIQQRGMRLITVLLNVDHADEDENARFTATSRFMTYIYQQFTVQTL 301 Query: 270 RKKINYIIKDFYQQ--NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 KK K + +EV ++ E T + + + DK + +K Sbjct: 302 VKKGEAYNKSSARVINGQKDEVTAVASEKLTIVRRYNHKKPTVHFTTDKNGYPTPLKKGV 361 Query: 328 LLKNKI 333 ++ Sbjct: 362 IVGKLT 367 >gi|194016923|ref|ZP_03055536.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 5*) (PBP-5*) [Bacillus pumilus ATCC 7061] gi|194011529|gb|EDW21098.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase) (DD-carboxypeptidase) (Penicillin-binding protein 5*) (PBP-5*) [Bacillus pumilus ATCC 7061] Length = 383 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 36/340 (10%) Query: 18 PFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 PF S A+ + L+D +G V+ AS+TK+MTA + Sbjct: 19 PFSSHAKADMSLSVSARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIES---- 74 Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132 + + +SK A + S+ K+G ++L++ L+++S ND AVAIAE + + + Sbjct: 75 -GKMKDTVKVSKRAIQAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLE 133 Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F+ MN + LG+ T+F N HG+ H HY++A DMAIL+ + + QY Sbjct: 134 GFIFMMNQKASELGMENTNFQNPHGLDDHKHHYSSAYDMAILT-KYAMEHKQYQKIAGTT 192 Query: 192 GLEIKGKK--YPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 + K + + N N G + + G KTG+T + +V++A +GD +LIAV + A D Sbjct: 193 FYKAKTMEGYWKNKNKLVTGLYKYSTGGKTGYTKLAKRTLVSTAAKGDAALIAVTINAPD 252 Query: 249 RNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNL-------------SNEVP 290 K S+ F + ++ ++ + FY++ ++ Sbjct: 253 D---WKDHISMFEYAFDHYKTYVLAEKGRLASLKGTFYEKKAFIKRDVDYFLNEDEKKLV 309 Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 I E+ T QK+ + + K + +D + I + Sbjct: 310 EIETEMLTPQKKWKKNAEAIPDVVGKMTFLLDDQVIEQVP 349 >gi|150015409|ref|YP_001307663.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] gi|149901874|gb|ABR32707.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii NCIMB 8052] Length = 411 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 24/286 (8%) Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPA 54 M++ + + F + S+ + P L+D +TG V+ + PA Sbjct: 1 MKRIFKTFNILFLFLFCFTYTSVQAETQPPQINAEGCALIDASTGQVLYGKNEEKVLEPA 60 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114 S TK+MTA + K L +T+ ++ ++ + KG +T+ + L L+++ Sbjct: 61 STTKVMTAIITLE-----KCKLDDEVTVQEDFTKIDGTAVGLLKGDVVTVRDLLLGLLLE 115 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 S ND A A+A+ + + + F + MN +K LG T+F N G+ H TTA D+A+ Sbjct: 116 SGNDCANALADHISGSTEAFSKLMNEKAKELGALHTNFKNPSGLPDPEHTTTAHDLALFL 175 Query: 175 WRIKTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVGT-----FLGADGMKTGFTC 222 Y+ I K N N+ + + A K G+T Sbjct: 176 REAIN-NKDYVQLSTTPNYTITLKNNPSKTIVLNNKNYMINKNSRYYYPFALCGKNGYTT 234 Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268 S VA+A + L+A L ALD++ ++L+ GF N + Sbjct: 235 KSNHTYVAAAEKNGHVLVASFLNALDKDQNFHDMQAVLNYGFDNYS 280 >gi|322411118|gb|EFY02026.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 412 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 151/367 (41%), Gaps = 33/367 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 +++ ++ + + P S + + ++ ++G ++ E D AS+TKL+ Sbjct: 2 IKRLFFVLLITLAFRATPINSDDFSVAAKHAIAVEVDSGKILYEKEADKAVPVASITKLL 61 Query: 61 TAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 T Y+V+ + K + +TIS + Y SN T+ LK LIV +A Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDA-RKYTVKELLKALIVTNA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162 N A+A+AE + TE KFV M+ K G+S +NA G+ H Sbjct: 121 NSPAIALAEKMGGTEPKFVDKMSQQLKEWGISDAKLVNATGLTNHFLGKNKYPKTEDEDE 180 Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218 + +ARD+AI++ + T+FP+ + G+ + N+ + G DG+ Sbjct: 181 NLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFV 240 Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274 G++ G + VA++++ +I V+L A D + LL N + +N Sbjct: 241 GYSEKGGASFVATSVENRMRIITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLN 300 Query: 275 YI----IKDFYQQNLSNE-VPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 IK F + N+ VP ++E+ + + + KD +K + Sbjct: 301 KSKSGQIKAFPILDSPNKTVPLVAEKNLSLIKPANSKIKKSLHITKDSSIISAPIKKGQV 360 Query: 329 LKNKITK 335 L + Sbjct: 361 LAKATLQ 367 >gi|312135071|ref|YP_004002409.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor owensensis OL] gi|311775122|gb|ADQ04609.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor owensensis OL] Length = 451 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 39/303 (12%) Query: 1 MRQFL------VIIAMAMLSNIF--PFLSIAETNK-------LPYYTLLDTNTGHVIAEN 45 M QFL +II++ + +F PF + ++ L++ +TG ++ E Sbjct: 1 MSQFLKKVVLYLIISVLFFAILFTYPFYTYSQQEASDKLGLSAKSAILVEAHTGQILFEK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMT 103 P+ PAS TK++TA V S+ + L +S A+ P S+ G T++ Sbjct: 61 NPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPGSSSYYLNPGETIS 116 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L +++ SAND A IAE++ + +FV+ MN +K++G ++F+N HG+ H Sbjct: 117 FQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNSYFVNPHGLHSPEH 176 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NTNWAV-----GT 209 YTTA D+++++ + F I N N + Sbjct: 177 YTTAYDLSLIARQ-AYQNEILRKIFSTVEYRITTASMHEKPEWQIIYNINKLLRKNSKYY 235 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + A G+KTG+T + ++ASA + D LIA+IL + D + L + GF N Sbjct: 236 YPYATGIKTGYTTQAKRCLIASAKKDDIELIAIILFSEDA---FSDAIKLFNYGFNNFKR 292 Query: 270 RKK 272 K Sbjct: 293 EKL 295 >gi|219667694|ref|YP_002458129.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] gi|219537954|gb|ACL19693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium hafniense DCB-2] Length = 423 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 148/351 (42%), Gaps = 30/351 (8%) Query: 1 MRQFLVII-AMAMLSNIF-PFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNP 53 MR V+ A+AML N P + +P L+D TG + PDHP+ P Sbjct: 1 MRLIAVLFTALAMLLNFAVPVFGSPDKVPVPELSSEGAILIDITTGQTLFAKNPDHPFEP 60 Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKL 110 AS TK+M+A + K L +T + + + + G +TL+N L Sbjct: 61 ASTTKIMSALIALE-----KGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYA 115 Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 L++ SAND AVAIAE + + F MN +K +G T F N G+ + GH TTARD+ Sbjct: 116 LLLNSANDAAVAIAEHIGGDVQGFTDLMNAKAKEIGALNTSFKNPSGLSEDGHLTTARDL 175 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCAS 224 A+++ R P Y + K I + N N + T GMKTG+T ++ Sbjct: 176 AMIA-RFAYQNPVLRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTTSA 234 Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284 G VA+A + ++L+ V+L + + + +L GF N N + K Sbjct: 235 GNTYVATAERDGRALLGVVLKSPSKTSIYTDMRNLFEYGFTNFE-----NVVYKPKGTAL 289 Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 S V + + T + I D H + I +I K Sbjct: 290 SSLMVSDTPVNLILTDEIIHTREIGSTAPPDISLHVL---PIASELKEIRK 337 >gi|291482380|dbj|BAI83455.1| penicillin-binding protein 5 [Bacillus subtilis subsp. natto BEST195] Length = 443 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 149/368 (40%), Gaps = 33/368 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M ++ +A+ L+ + + ++ +++ ++G ++ D AS+TK Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVK 114 +MT Y++ + + K T E SN +K T+ + + Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHY------- 164 SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ HGH Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190 Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTFLG--- 212 +A+DMAIL+ + TD+P+ + I + + PN N+ + + Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250 Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267 DG+KTG T ++G +A + +I V+L A R + + F N Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLYAKGNLHTGRFDETKKMFDYAFDNF 310 Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 + ++ + + +S + E T K +E K ++ + +T Sbjct: 311 SMKEIYAEGDQVKGHKTVSVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370 Query: 328 LLKNKITK 335 K TK Sbjct: 371 APVKKGTK 378 >gi|298244964|ref|ZP_06968770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297552445|gb|EFH86310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 319 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 17/249 (6%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86 + L+D GHV+ + + + AS TK+MTA + L IT+ ++A Sbjct: 72 QAKVAYLVDMQNGHVLYDIHGEQAAPMASTTKIMTALIAIQ-----TGNLDQEITVKRDA 126 Query: 87 S----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 E SN+ G TL L L++ S D A+AI+++L + + FV MN + Sbjct: 127 YLHVIELGSSNAGLVPGEQFTLRELLYGLMLPSGGDAAIAISDALAGSPENFVVRMNLFA 186 Query: 143 KNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---- 197 L L TH+ N G+ HY++A D+ L+ T P + + Sbjct: 187 SRLHLFQTHYTNVDGLTSEDTHYSSAADLTRLTRYALT-NPIFRQIVDTPTYTLPTTKQH 245 Query: 198 --KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255 + NTN + T+ G G+KTG T +G+ +V A + SLI V+L + D+ R++ Sbjct: 246 GPHTWTNTNTLLSTYKGMLGVKTGHTDLAGYCLVFEAQRNGHSLIGVVLNSPDQAIRDQD 305 Query: 256 SASLLSMGF 264 + LL+ GF Sbjct: 306 VSKLLNWGF 314 >gi|302871943|ref|YP_003840579.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor obsidiansis OB47] gi|302574802|gb|ADL42593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor obsidiansis OB47] Length = 451 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 39/303 (12%) Query: 1 MRQFL------VIIAMAMLSNIF--PFLSIAETNK-------LPYYTLLDTNTGHVIAEN 45 M QFL +II+ + +F P + ++ L++ +TG ++ E Sbjct: 1 MSQFLKKVVLYLIISALFFAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMT 103 P+ PAS TK++TA V S+ + L +S A+ P S+ G T++ Sbjct: 61 NPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPGSSSYYLNPGETIS 116 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L +++ SAND A IAE++ + +FV+ MN +K++G +HF+N +G+ H Sbjct: 117 FQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNSHFVNPNGLHSPEH 176 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NTNWAV-----GT 209 YTTA D+++++ + F I N N + Sbjct: 177 YTTAYDLSLIARQ-AYQNEMLRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYY 235 Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269 + A G+KTG+T + ++ASA + D LIA+IL + D + L + GF N Sbjct: 236 YPYATGIKTGYTAQAKRCLIASAKKDDIELIAIILFSEDA---FSDAIKLFNYGFNNFKR 292 Query: 270 RKK 272 K Sbjct: 293 EKL 295 >gi|229826630|ref|ZP_04452699.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC 49176] gi|229789500|gb|EEP25614.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC 49176] Length = 478 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 32/293 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHPW 51 R F + + +L ++ ++ + K ++D TG ++ + W Sbjct: 24 RSFAFFLMIMVLFSVLKINTVFAADSALWPECPSIKAKEAVVMDLATGTILVSKNGNKKW 83 Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNAL 108 PAS TK+MTA + K L + +K +A++ S+ G +TL L Sbjct: 84 YPASTTKIMTAMLAIEHAK----SLDEEVEFTKEAIDAADRGSSSIGITPGEKLTLRECL 139 Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168 L++ SAN++A A+A + F MN + LG + THF N G+ + HYTT Sbjct: 140 YGLMLASANEVANALAIHTAGSIDAFADMMNEKAAELGCTNTHFRNPSGLYEDDHYTTPA 199 Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAVG-------TFLGAD 214 D+A ++ + + + + NT+ + Sbjct: 200 DLAKIARAAIKID-AFKEIASTRKYVLPKTNLMKEKRPLSNTHQLFNPMQCPEHAYEYCY 258 Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 KTG+T + FN+V+ +G ++ VI+ A R+ + + L F Sbjct: 259 AGKTGYTREAKFNLVSYVKKGAMDVVCVIMNAESRDVQYTNTKKLTDYTFKRF 311 >gi|94990442|ref|YP_598542.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] gi|94543950|gb|ABF33998.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10270] Length = 451 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 154/340 (45%), Gaps = 30/340 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQAGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 160 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 161 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALE 220 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ + DFP+ + + + G + N + G DG+ Sbjct: 221 EENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 280 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL R+K Sbjct: 281 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY-VARTYCRRK 339 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 I +++L + + E + +++ Q ++ Sbjct: 340 ILKKGSLVSERSLPIQDGQVKELPISVAEDVTIILQQDEQ 379 >gi|312793435|ref|YP_004026358.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180575|gb|ADQ40745.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 451 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 37/302 (12%) Query: 1 MRQFL--------VIIAMAMLSNIFPFLSIAETNK-------LPYYTLLDTNTGHVIAEN 45 M QFL ++ +PF + ++ L++ +TG ++ E Sbjct: 1 MSQFLKKAVLYLTSSALFFVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEK 60 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMT 103 P+ PAS TK++TA V S+ + L+ +S A+ P S+ G T++ Sbjct: 61 NPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMIEPGSSSYYLNPGETIS 116 Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163 + L +++ SAND A IAE++ + +FV+ MN +K++G +HF+N +G+ H Sbjct: 117 FQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQH 176 Query: 164 YTTARDMAILSWRI--------KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----GTF 210 YTTA D+++++ + +Y + + N N + + Sbjct: 177 YTTAYDLSLIARQAYQNEILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYYY 236 Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270 A G+KTG+T + ++ASA + D LIAVIL + D + L GF N Sbjct: 237 PYATGIKTGYTAQAKRCLIASAKKNDIELIAVILSSEDA---FSDAIKLFDYGFNNFKRE 293 Query: 271 KK 272 K Sbjct: 294 KL 295 >gi|150390405|ref|YP_001320454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] gi|149950267|gb|ABR48795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus metalliredigens QYMF] Length = 377 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 16/272 (5%) Query: 22 IAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75 ++ N+ P+ L+D TG V+A AS TK++T + L Sbjct: 28 LSAKNQAPHFPSSHAAILMDVETGRVLAGQNFHEKMPMASTTKILTGLLAVENLP----- 82 Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135 L I+++ A S+ + + + + L+++S ND A AIA + + + F Sbjct: 83 LDKLISVNPKAVGVEGSSIYLESNERVKSIDLIYGLMLRSGNDAAEAIAYEISGSIEDFA 142 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGL 193 MN +K +G + T+FMN HG+ HYTTA D+++++ + F + + + Sbjct: 143 TLMNQRAKEIGANNTNFMNPHGLHHDDHYTTAYDLSLITRAALKNVTFKEVVKTEFWQAE 202 Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 K + N N + ++ ADG+KTG+T SG +VASA + IAV L D Sbjct: 203 REGHKDFANKNKLLKSYESADGVKTGYTRRSGRCLVASATNNNMQFIAVTLNDSDD---F 259 Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 + +LL GF + K + K +Q + Sbjct: 260 NTTRTLLEYGFETYSPFKILEQEEKLISKQVI 291 >gi|331002378|ref|ZP_08325896.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410194|gb|EGG89628.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon 107 str. F0167] Length = 483 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 145/357 (40%), Gaps = 32/357 (8%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLDTNTGHVIAENYPDHPWNPA 54 + + + + P ++A + L+D ++G V+ + PA Sbjct: 8 KTIITLFLTFITVFSLPLKALAYVDWPANANILSEGAILMDADSGAVLYGKNIHEHYYPA 67 Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLL 111 S+TK++TA +V L +T SKNA E S++ G T+T+ + L + Sbjct: 68 SITKILTALIVVE-----NCNLDDIVTFSKNAVYNVEAGSSSAGLDVGDTLTVRDCLYAM 122 Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 +++SAN+ A A+AE + ++F MN + NLG + +HF+N G+ HYT+A D A Sbjct: 123 LLQSANEAANALAEHTAGSIEEFANMMNQKASNLGCTDSHFVNPSGLNSPDHYTSAYDYA 182 Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIK-------GKKYPNTNWAV-----GTFLGADGMKTG 219 ++S P + G+ N + + + A KTG Sbjct: 183 LISRAAF-MNPIVTEIDSATYYNLPPSKRVPTGQTIYNHHSMLRKTSGNYYQNAICGKTG 241 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279 +T +G +V A LI V+L T + LL+ GF N + K I Sbjct: 242 YTTLAGNTLVTYARNDQIGLITVVLNGN--KTHYTDTQELLNFGFANFKNIKLSTADITT 299 Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336 + N+S +P+ +E + + D +S +DFE + L K Sbjct: 300 KFSSNIS-MIPDFNEYIIEPDDNASISLPNNADINDIKST-MDFESVAGLPANALCK 354 >gi|94994364|ref|YP_602462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] gi|94547872|gb|ABF37918.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus pyogenes MGAS10750] Length = 451 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 154/340 (45%), Gaps = 30/340 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 160 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 161 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALE 220 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ + DFP+ + + + G + N + G DG+ Sbjct: 221 EENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 280 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL R+K Sbjct: 281 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY-VARTYCRRK 339 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 I +++L + + E + +++ Q ++ Sbjct: 340 ILKKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQ 379 >gi|239625589|ref|ZP_04668620.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519819|gb|EEQ59685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 391 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 23/256 (8%) Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83 + LLD TG+V+ D + PAS+TKLMTA +V L +T S Sbjct: 9 PAIEAEGAALLDAATGNVLFSKNGDTKFYPASITKLMTALLVAE-----NCNLDDKVTFS 63 Query: 84 KNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140 A+ E + G MT+ L L++KSAN++ A+AE + + KF + MN Sbjct: 64 STATTNLESGAVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNA 123 Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---- 196 + LG + THF N HG+ HYTT RDMA+++ + + Sbjct: 124 KAAALGCTNTHFTNPHGLNDTNHYTTPRDMALIARAAFQ-NDTVKTVASTRTYTLPPTIK 182 Query: 197 ---GKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 G + + + G G KTG+T +G +V + + LIAV++ Sbjct: 183 NPSGLTVTMGHKMLNPSDSRYYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVVM--KS 240 Query: 249 RNTRNKVSASLLSMGF 264 ++T + ++ GF Sbjct: 241 KSTHYTDTKAMFDYGF 256 >gi|148266151|ref|YP_001232857.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens Rf4] gi|146399651|gb|ABQ28284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens Rf4] Length = 286 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 17/285 (5%) Query: 3 QFLVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61 + +++ + + + + + ++ L+ G + P ASLTK+MT Sbjct: 4 RIMLLATLMLAAGNGGAAEVPDPFPRMASAYLVQIQ-GKTVWARRPVRRLPQASLTKIMT 62 Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 A +V + L +T+S+ A+ S + G L++ L ++V SAND Sbjct: 63 AILVLE-----RCKLDEVVTVSRRAAGETGSRIGLRVGERFRLEDLLAAMLVASANDACH 117 Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 A+A+ L +E++FV MN ++ LGL + F NA G HY+TARD+AIL+ Sbjct: 118 ALADHLAGSEERFVALMNARARGLGLDNSRFANACGHDAPNHYSTARDLAILAETALK-N 176 Query: 182 PQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235 P + K L+I+ N N +G +G G+KTG+T +G +VA A + Sbjct: 177 PAFGRLVSSKRLKIRTVDRRRAFSLVNRNKLLGRSVGVSGVKTGYTENAGRCLVALAERD 236 Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280 ++ V+L A R + + ++ F + N F Sbjct: 237 GTRVLLVLLNAP---HRFRDAVVMIERAFAVAPPGRFGNRSTAPF 278 >gi|225867885|ref|YP_002743833.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] gi|225701161|emb|CAW98054.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. zooepidemicus] Length = 411 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 152/362 (41%), Gaps = 33/362 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60 M++ +V +A M L+ + ++ TG ++ ASLTKL+ Sbjct: 1 MKKLIVTLAALMCLITNTSLAEDFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60 Query: 61 TAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117 T Y+V +K + + + +S+ A + P ++ + T+ ++ ++ SAN Sbjct: 61 TVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120 Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163 AVA+AE + +E FV M + G+ +NA G+ + Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDEN 180 Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219 TARD+A+++ ++ DFP+ + L+ K P++N + G DG+KTG Sbjct: 181 QMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKALPSSNLLLAGREMGRAGVDGLKTG 240 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275 T +G ++ +A+Q + +I+VIL A D R + LL F + K + Sbjct: 241 TTSQAGQTMITTAVQDNMRIISVILHADQSDTDERARFVETNRLLDYCFDSYALEKLVAQ 300 Query: 276 --------IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327 I+K +Q L + V + ++Y+ ++K+ K + + T Sbjct: 301 NQVLPERLIVKQAAKQRLRVKASQTLTVVRPKDQTELSYSLRIKDKALKVPIRQNKKVGT 360 Query: 328 LL 329 L+ Sbjct: 361 LI 362 >gi|153855278|ref|ZP_01996444.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814] gi|149752277|gb|EDM62208.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814] Length = 452 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 19/264 (7%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 L+D ++G V+ D AS TK+MT + L + I + Sbjct: 80 PAELYARSAVLMDADSGRVLFGKDTDVVRPMASTTKIMTCILALESL---REHPDQTIEV 136 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ P + +KG + + L L+++S ND AVA+AE + + ++F + MN + Sbjct: 137 SDQAASQPKVHLGMQKGEVFYIKDLLYSLMLESHNDSAVAVAEGIAGSVEEFAKEMNAKA 196 Query: 143 KNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQ---YMHYFQIKGLEI 195 +G THF+ +G+ H TTA D+A + + ++ + K + Sbjct: 197 AEIGCKNTHFITPNGLDAEDEGGVHSTTAEDLAKIMRYCIMTSGEKETFLEVTRTKEYQF 256 Query: 196 ------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + N N + GA KTGFT +G+ V S D++ I +L Sbjct: 257 QDADRKRTFSCHNHNAFLDMMDGALSGKTGFTADAGYCYVGSLRWDDRTFIVALLACGWP 316 Query: 250 NT---RNKVSASLLSMGFYNKTDR 270 N + K + L+ G + R Sbjct: 317 NNKGYKWKDTRKLMEYGLEHYQYR 340 >gi|291531257|emb|CBK96842.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3] Length = 390 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 134/337 (39%), Gaps = 37/337 (10%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAEN 45 R+ L + A + + AE+ K L++ +TG V+ Sbjct: 3 RKILSVAAAVIFAVTATVTVYAESAKKLCYLENTDKSGIGVSAVSAILIEADTGTVLFSK 62 Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105 AS TK+MTA + + K + A + ++ ++G +T Sbjct: 63 NEKEHRQIASTTKIMTALLTLEAGEPDK-----EFEVDPTAIKVEGTSMGLREGDIVTRR 117 Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165 +++ S ND A A A ++ ++ F MN ++ +G++ T+F+ G+ G Y+ Sbjct: 118 ALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTNFVTPSGLDADGQYS 177 Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTG 219 A D+A+L+ + + ++ + N+N + ++ G G+KTG Sbjct: 178 CAYDLALLTREAMN-NKDFAKICGLPKAKVSFGNPKSDRILVNSNKLLTSYDGCIGVKTG 236 Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKI 273 FT ++ +V+ A + LIAV L A + A +L GF K D + Sbjct: 237 FTDSARRTLVSCAERDGVRLIAVTLNAPND---WSDHAKMLDYGFEKVTLCEMKYDSSAL 293 Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310 + + ++ +S E + +C QK+ I M Sbjct: 294 SLSVVGSEKETVSVECGTVKLPLCNEQKDKITAEIYM 330 >gi|15895327|ref|NP_348676.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|15025043|gb|AAK80016.1|AE007708_12 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum ATCC 824] gi|325509472|gb|ADZ21108.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA 2018] Length = 351 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 18/282 (6%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M+ + I+ +A++ I + A+ +K +D+NT ++ E D AS Sbjct: 1 MKIYRSIV-LALIVCILTPATFAKADKLNLNARCAIAIDSNTKMILYEKNADMIVPMAST 59 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+MT+ V + L TISK A+ S +K G +TL L L+++S Sbjct: 60 TKIMTSLVAIKY-----GNLDKKFTISKKAASIRGSKVGYKAGEEITLRELLYGLMLRSG 114 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176 ND A+ IAE + +KF MN + +G +HF HG+ + HY TA D+A ++ Sbjct: 115 NDAAICIAEGIAGNTEKFADLMNEYAYKIGAFNSHFQTPHGLDKDLHYCTAYDLAFITS- 173 Query: 177 IKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 + + + K + + Y N N + GADG+KTG+T +G +V+S Sbjct: 174 VAKENKVFNDIVSSKDVGSGQYGFTRSYHNINKILYQIPGADGVKTGYTGNAGKCLVSSV 233 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274 +I V+L R K + + N +K ++ Sbjct: 234 KMNGHDVIFVVLNCT---PRWKETKRMYEYVKKNYEYKKMVS 272 >gi|315222027|ref|ZP_07863938.1| beta-lactamase [Streptococcus anginosus F0211] gi|315188993|gb|EFU22697.1| beta-lactamase [Streptococcus anginosus F0211] Length = 413 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 32/365 (8%) Query: 1 MRQFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++F++ + +L + P L+ + +D TG ++ E + P AS+TKL Sbjct: 1 MKKFIITLVTTLLIFLAPTVLADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116 +TAY+V+ + + K L T + IS + P +++ + T++ L+ ++ SA Sbjct: 61 LTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNPDASNVPLEARKYTVEELLETSLIASA 120 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---------------H 161 N A+A+AE + +EKKFV M + G+ +NA G+ Sbjct: 121 NSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKDATIVNASGLNNSVLGEEHIYPGSGKED 180 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ R+ D+P+ + Q G ++N + G DG K Sbjct: 181 ENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLKNMPAFRAGVDGFK 240 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDR--- 270 TG + G + V + Q LI V+L D N R ++ ++ + T + Sbjct: 241 TGTSDKGGSSFVGTIQQRGMRLITVLLNVNHADEDENARFTATSRFMTYIYQQFTVQTIV 300 Query: 271 KKINYIIKDFYQQ--NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328 KK K + +EV ++ + T + + + DK + +K + Sbjct: 301 KKGEAYNKSSARVINGKKDEVTAVASKKLTIVRRYNHKKPTVHFTTDKNGYPTPLKKGVV 360 Query: 329 LKNKI 333 + Sbjct: 361 VGKLT 365 >gi|298246708|ref|ZP_06970513.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] gi|297549367|gb|EFH83233.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter racemifer DSM 44963] Length = 338 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 18/266 (6%) Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74 ++ + A LLD +TG+V+ + + P AS TK+MTA VV KK Sbjct: 67 SVLTVMGGAPPIDAKAAYLLDIDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKKE 126 Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +P I + ++ SN+ G T+T+++ L L++ S +D A+ +A ++ + F Sbjct: 127 ATVSP-DIPQYVFQHNGSNAKLMPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSDAF 185 Query: 135 VQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILSWRIKTDFPQYMH 186 V MN + L THF+N G+ GHY++ARD+A L+ P + Sbjct: 186 VGMMNRFALRHHLFQTHFINPDGLTYYDANGNPLPGHYSSARDLARLT-AYALSNPLFAK 244 Query: 187 YFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 + ++ + NTN + G+KTGFT +G+ +V SA + L+ Sbjct: 245 IVGTRQYDLAWSPKHGAYHWANTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHHLV 304 Query: 241 AVILGA--LDRNTRNKVSASLLSMGF 264 +L + D N R + + +LL GF Sbjct: 305 GTVLFSSNTDTNQRFRDAKTLLEWGF 330 >gi|311068836|ref|YP_003973759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] gi|310869353|gb|ADP32828.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942] Length = 383 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 16/318 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63 ++++ +L+ I + A N ++D +G V+ AS+TK+MTA Sbjct: 10 IILVTAFLLTFIKEHKAYAAINVSAKSAIVIDGASGRVLFAKDEHEKRRIASITKIMTAV 69 Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123 + + +T+S NA S K+G + L + + L+++S ND A AI Sbjct: 70 LAIES-----GKMEETVTVSANAVRTEGSAIYLKEGQKVKLKDLVYGLMLRSGNDAAAAI 124 Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS-WRIKTDF 181 AE + + FV MN ++ +G+ T F N HG+ H HY+TA DMAIL+ + +K Sbjct: 125 AEHVGGSLGGFVYMMNQKAEQIGMENTRFQNPHGLDDHENHYSTAYDMAILTKYAMKLKD 184 Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240 Q + ++ E + N N + G + + G KTG+T + +V++A + LI Sbjct: 185 YQTISGTKVYKAETMESVWKNKNKLLTGLYQYSTGGKTGYTKLAKRTLVSTASKDGTDLI 244 Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC--- 297 AV + + ++ F + ++ I +V Sbjct: 245 AVTINDPND---WDDHMNMFEYVFNHYKTYIVAKKGDIPKLKETFYGSRAFIKRDVTYLL 301 Query: 298 -TTQKEIINYNTQMKEAK 314 +K+ + NT + + K Sbjct: 302 NEAEKDEVKINTTLLKPK 319 >gi|23098797|ref|NP_692263.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22777024|dbj|BAC13298.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) [Oceanobacillus iheyensis HTE831] Length = 393 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 29/353 (8%) Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 +R+F ++II ++ I+ ++A+ + L++ +G ++AE + PAS+ Sbjct: 2 LRKFYIMIIITSLNFFIWTSTTLADEDLSLHSESAILMEAESGQILAEKNANQQMYPASV 61 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116 TK+ TA V L+ + IS+ A+E + +G ++L +K L++ S Sbjct: 62 TKIATAIYVIE-----NGNLSEEVEISEKATEADGTTVFLAEGEKVSLGKLVKGLLINSG 116 Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND VAIAE + + ++F + M + G+ T+F N HG+ HYTTA D+A ++ Sbjct: 117 NDAGVAIAEHMNGSVREFSKEMTEFFEEKAGIENTNFDNPHGLFDDNHYTTAEDLAKIT- 175 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-------FLGADGMKTGFTCASGFNI 228 + +++ F +K ++ + K + T + G G K G+ SGF + Sbjct: 176 KYAMQNEKFVKLFGMKSVDWESKTWETTILNHHRMVKGEIPYDGVTGGKNGYVSRSGFTL 235 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK--------TDRKKINYIIKDF 280 V +A Q +LIAV L + + LL GF + T K+ Sbjct: 236 VTTAEQDGMNLIAVTLKTPLSEQSYEDTVELLDYGFEHYEPFTIDEGTSFMTNGKQFKNS 295 Query: 281 YQQN-LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332 + E + EE+ K +I N ++ + ++ ++ ++ T++KN Sbjct: 296 EDLTYVHEEGSKVEEEIKEDGKLVIEDNGELLKEFQLDN--VEKKQPTMMKNN 346 >gi|255656482|ref|ZP_05401891.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-23m63] gi|296450072|ref|ZP_06891834.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296878453|ref|ZP_06902459.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] gi|296261080|gb|EFH07913.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP08] gi|296430537|gb|EFH16378.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile NAP07] Length = 429 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 29/282 (10%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+ F + + L+D +G ++ + PAS TK+ TA +V Sbjct: 15 FTSFLGSSNISFADNEPSIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K+ L I I KN + S+ K+G + T+ L L+V SAND A +A + Sbjct: 75 EVKD----LNQVIEI-KNLPQIDGSSMYLKEGESFTVKQLLNALLVHSANDAAFVLARYV 129 Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 + +KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ + Sbjct: 130 GGGDVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMN-NDTFRQ 188 Query: 187 YFQIKGLEIKGKK-------YPNTNWAVGT--------------FLGADGMKTGFTCASG 225 + K L+ + K + NTN + + + DG+KTG+T A+G Sbjct: 189 IVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAG 248 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 +++SA++ + +I + + + + S L+ GF N Sbjct: 249 KCLLSSAVKDGRRVIVAVFNSTNADL-YLDSRILIDYGFDNF 289 >gi|71903459|ref|YP_280262.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] gi|71802554|gb|AAX71907.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS6180] Length = 451 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 139/301 (46%), Gaps = 29/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 160 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 161 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALE 220 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ + DFP+ + + + G + N + G DG+ Sbjct: 221 EENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 280 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL RK Sbjct: 281 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVDRTYCRRKI 340 Query: 273 I 273 + Sbjct: 341 L 341 >gi|118589859|ref|ZP_01547263.1| penicillin binding protein [Stappia aggregata IAM 12614] gi|118437356|gb|EAV43993.1| penicillin binding protein [Stappia aggregata IAM 12614] Length = 384 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 12/306 (3%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 MR+ + + ++++I AET K P L + +G ++ PD P++P +L K Sbjct: 1 MRR-GALFSFLVVASIAGPAQAAETIVTKAPMAFLYEPASGTILFAKEPDRPFSPGALVK 59 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLI 112 +MTA VF LK+ L +S++A + S + +++ LK L+ Sbjct: 60 VMTAATVFKSLKDGDLKLDQTCKVSEHAWRTGGAPSGRGATMFAAIKSDIPVEDLLKGLL 119 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 V + ND A+ +AE L +E+ F M + +G+ + F N+ G + TT RD A Sbjct: 120 VHNGNDAAIVLAECLDGSEEAFAVRMTEFAHAIGMKNSRFGNSTGYPEVPSQTTVRDQAR 179 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232 L+ I F I N N +G DG+ G +G++ + S Sbjct: 180 LAEYILESHADLYPMFAIPEFTWNKIFQRNKNPLLGEIRNLDGLGGGNDAEAGYSGLGSV 239 Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLS--MGFYNKTDRKKINYIIKDFYQ-QNLSNEV 289 + + +IA + G R + ++ ++ ++ D +S V Sbjct: 240 DRNGRRVIAAVAGLSSDKHRLQTLKEVIEGAWEYFTVQTLFSAGDVVADGRVFGGISASV 299 Query: 290 PNISEE 295 P +SEE Sbjct: 300 PLVSEE 305 >gi|253682141|ref|ZP_04862938.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] gi|253561853|gb|EES91305.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D str. 1873] Length = 377 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 35/355 (9%) Query: 1 MRQ---FLVIIAMAMLSNI---FPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDH 49 M++ ++++M +L NI + +I NK +D+ T V+ E D Sbjct: 1 MKKRILIFMVLSMCLLFNITFAYNVQAITPKNKLIYINARSAIAIDSKTKCVLYEKNSDM 60 Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109 AS TK+MT V + L +S A+ S +KKG +++L L Sbjct: 61 LLPIASTTKIMTTLVALKY-----GNLDDKFEVSSKAANIRGSQVGYKKGESISLKELLY 115 Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 L+++S ND A+ IAE L + +KF + MN + +G +HF + HG+ HY+TA D Sbjct: 116 GLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFESPHGLDSQNHYSTAYD 175 Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVGTFLGADGMKTGFTCASG 225 +A ++ + K + + +K +E K + Y N N + A+G+KTG+T +G Sbjct: 176 LARITAKAK-ENELFNKIVAVKDVEAKEYGFTRSYHNINKILYQIPNANGVKTGYTGGAG 234 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL-----SMGFYNKTDRKKINYIIKDF 280 +V S D +I V+L R K + + + F T + N +I + Sbjct: 235 KCLVTSVKDNDDDIIIVVLNCT---PRWKETGKIYKFVKENYDFKKITSK---NQVIGNI 288 Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF---IDFEKITLLKNK 332 ++++ + + ++ + K S+ +D KI + K+ Sbjct: 289 IYNGNKKIDLICNKDIVVPVGKQEHCEFKIVKPKSIPSNVYKGMDLGKIDIYKDN 343 >gi|299820880|ref|ZP_07052769.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601] gi|299817901|gb|EFI85136.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601] Length = 441 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 42/357 (11%) Query: 14 SNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 ++ P + A T ++ +TG V+ E PD AS+TK++ Y++ + Sbjct: 24 FSLVPNDAQAATTPNVNAKAAFTIEESTGKVLYEKNPDQLLGIASMTKMLDEYILLEKID 83 Query: 71 EKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126 + K T + IS A + SN + G T+ + + + SAN A+A+AE Sbjct: 84 QGKLKWTDKVKISGYAHEVSQDTSLSNVPLRNGEFYTVKELYQAMAIYSANGAAIALAEK 143 Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTARDMAIL 173 + +EK FV MN + +L L F+N G+ + TAR MA L Sbjct: 144 IAGSEKAFVGLMNEKANSLKLGKHKFVNVTGLNNSDLKGKQQIGGKNSENKMTARGMAKL 203 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFL----GADGMKTGFTCAS 224 + + +P + L + N NW + + G DG+KTG T + Sbjct: 204 AKSLIDTYPDVLKTASTTKLAFRKGTSDQINMSNWNWLLPGLIYGRKGVDGLKTGTTDYA 263 Query: 225 GFNIVASAIQGDQSLIAVILGALDRN-------TRNKVSASLLSMGFYNKTDRKKINYII 277 G + A+A Q +I VIL A N TR K + +L F N K+ + Sbjct: 264 GMCLTATAKQDGMRVITVILHANGGNSSDQHDGTRFKETNKMLDYAFDNF----KVKQVA 319 Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 K + ++ + + K N N + KD+ + + E + L+ +IT Sbjct: 320 KAGQAVKKPASI-SVKDGKEDSVKLETNKNVNLVVPKDQANPKLS-ENVKLVSKEIT 374 >gi|306827400|ref|ZP_07460687.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] gi|304430547|gb|EFM33569.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes ATCC 10782] Length = 442 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 154/340 (45%), Gaps = 30/340 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 +++++++ M + + F +A + + +++ ++G V+ E P ASLTK Sbjct: 33 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 92 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 93 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 151 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 152 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALE 211 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ + DFP+ + + + G + N + G DG+ Sbjct: 212 EENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 271 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL R+K Sbjct: 272 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY-VARTYCRRK 330 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 I +++L + + E + +++ Q ++ Sbjct: 331 ILKKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQ 370 >gi|239623520|ref|ZP_04666551.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521551|gb|EEQ61417.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 427 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 35/295 (11%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D ++G ++ D AS TK+MT + L +T S A+ Sbjct: 48 AQSAVLMDGSSGRILYGKGQDIIRPMASTTKIMTCILALEL-----GNLDDKVTASSYAA 102 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P + + G L++ L L+++S ND AV IAE++ + + F MN ++ LG Sbjct: 103 SQPKVHLGVRSGEEYRLEDLLYALMLESYNDAAVMIAENIGGSVEDFAALMNQKAEELGC 162 Query: 148 SATHFMNAHGVV---------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198 T+F+ +G+ +H H TTA D+A + + P+ + I + Sbjct: 163 RDTYFITPNGLDGVKKDKDGVEHIHSTTAADLAAIMRYCVMESPKKEEFLSITRTQNHTF 222 Query: 199 K---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--- 246 N N + G KTGFT +G++ V + ++ + +LG Sbjct: 223 TDSSGRRSYSCFNHNAFLNMMEGVLSGKTGFTGGAGYSYVGAMENDGRTYVIALLGCGWP 282 Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301 + + + L + G + +KD +++ + ++P ++ +C ++ Sbjct: 283 PHKTYKWADARKLYTYGLEHFQ--------LKDVFREEVLPDIP-VTGGLCWEEE 328 >gi|229136205|ref|ZP_04264956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] gi|228647258|gb|EEL03342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196] Length = 425 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 31/308 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195 NA G+ + +ARDM ILS I T +P+ + + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224 Query: 196 -KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW + + GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYNKTDRK-KINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINY 306 R S +L+ GF N +K KI+ K + + V E+ V T + Y Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344 Query: 307 NTQMKEAK 314 + K Sbjct: 345 KISTEADK 352 >gi|229170094|ref|ZP_04297784.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] gi|228613378|gb|EEK70513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621] Length = 425 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 31/308 (10%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSN 93 TG ++ E PD AS++KL+ Y V +KE K T +TIS A E SN Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164 Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195 NA G+ + +ARDM ILS I T +P+ + + + Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224 Query: 196 -KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW + ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284 Query: 251 TRNKVSASLLSMGFYNKTDRK-KINYIIKDFYQQNLSNEVPNISEE---VCTTQKEIINY 306 R S +L+ GF N +K K++ K + + V E+ V T + Y Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKVDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGNKAPY 344 Query: 307 NTQMKEAK 314 + K Sbjct: 345 KISAEADK 352 >gi|228969874|ref|ZP_04130604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] gi|228789827|gb|EEM37679.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11 [Bacillus thuringiensis serovar sotto str. T04001] Length = 374 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 32/314 (10%) Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDN 106 AS+TK+M+ Y+V + + K + IS+ A + SN + G + T+ Sbjct: 1 MAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKE 60 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162 + + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ Sbjct: 61 LYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGY 120 Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYP----NTNWAV 207 + +ARD AIL+ R+ DFPQ ++ +I +G KYP N NW + Sbjct: 121 HLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWML 180 Query: 208 G----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263 + G DG+KTG T +G + + LI+V++ A R + L G Sbjct: 181 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYG 240 Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD---KESHF 320 F N + Y + + + V N E+ Q + K KD KE Sbjct: 241 FANFEVKNV--YGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKV 298 Query: 321 IDFEKITLLKNKIT 334 + E +K +T Sbjct: 299 SNKEPEAPIKKGVT 312 >gi|229034027|ref|ZP_04188975.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] gi|228728290|gb|EEL79318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271] Length = 423 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 39/333 (11%) Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSN 93 TG ++ E PD AS++KL+ Y V +KE K T + IS A E SN Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102 Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153 F+KG T+ +++ SAN ++A+AE L +EK F+ N +K LGL F+ Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162 Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195 NA G+ + +ARDM +LS + T +P+ + + + Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222 Query: 196 -KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 K + N NW + ++ GADG+KTG + +G+ +A +GD LI+VI+ + Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282 Query: 251 TRNKVSASLLSMGFYNKTDRKK---------INYIIKDFYQQNLSNEVPNISEEVCTTQK 301 R S L+ GF N +K + +D E+ I+++ K Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKHNTISVVKGKEDQVTVTPEKEITVIAKK---GSK 339 Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334 + T++ ++ ++ H + K IT Sbjct: 340 DPYKIGTEVDKSLAEDGHLVAPVKKDANVGSIT 372 >gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] Length = 702 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 74/260 (28%), Positives = 125/260 (48%), Gaps = 23/260 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 + +D +TG V+ P+ P + AS TK+MTA++V L +T S A+ Sbjct: 433 ARAWVAIDADTGRVLGGREPERPLDMASTTKIMTAHLVLKELAAHPEARDEVVTFSARAA 492 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-------KTE-----KKFV 135 P S+S ++G + + L L++ S ND AVA+AE ++ + FV Sbjct: 493 ATPGSSSEVREGERVRVGELLYGLMLPSGNDAAVALAEQFGQRLAARDGSDGLDPLEAFV 552 Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---- 191 MN ++ LGLSAT F+N HG+ H +A D+A L+ R+ + P++ + Sbjct: 553 AAMNREAQALGLSATRFVNPHGLTAPNHQASALDLARLT-RVALENPEFAALVATRRRAA 611 Query: 192 -----GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246 + + + NTN + G G+KTG T ++G +VA QG++ +I V+LG+ Sbjct: 612 RLIDGEGKGRTIVWSNTNELL-KIEGFAGVKTGTTSSAGACLVALGQQGERRVIVVVLGS 670 Query: 247 LDRNTRNKVSASLLSMGFYN 266 +R + +L F+ Sbjct: 671 AASASRYADARNLFRWAFHQ 690 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 15/122 (12%) Query: 38 TGHVIAENYPDHPWNPASLTK--LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS- 94 TG + D P ASL K L+ + + L TP+T+ + P + Sbjct: 64 TGET-FAHRADAPMPTASLIKFPLL--IEAYRRVATGALDLKTPVTLHDED-KVPGAGIL 119 Query: 95 --TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152 F +G+T+ L + L+L+IV S N +A + +N LGL T F Sbjct: 120 TYHFSQGTTIPLRDVLRLMIVYSDNTATN-LALDAVG-----LDAVNAEMARLGLKRTKF 173 Query: 153 MN 154 + Sbjct: 174 HS 175 >gi|306829382|ref|ZP_07462572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC 6249] gi|304428468|gb|EFM31558.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC 6249] Length = 413 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 33/327 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ ++ + + +S + + ++ TG V+ E P AS+TKL Sbjct: 1 MKKIIISLLTLLTFGTISTISAQSFDIAAKHAIAVEATTGKVLYEKDASQPVEIASITKL 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 +T Y+V+ L++ L+TP+ IS + SN + T++ L+ +V S Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYHLTTNSEASNVPMEA-RNYTVEQLLEATMVSS 119 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161 AN A+A+AE + +EK FV M G+ +N G+ Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDE 179 Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217 + +A D+AI++ + D+PQ + + G + +TN + G DG+K Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKASSTFAGLEIHSTNSMLEGMPAYRGGIDGLK 239 Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKT--DRK 271 TG T +G + V + ++ +I V+L A + R ++SLL N T Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDGNPYARFTATSSLLDYISANFTLQTVV 299 Query: 272 KINYIIKDFYQQNL---SNEVPNISEE 295 K KD L + VP +++ Sbjct: 300 KKGETYKDSKVTVLDGKEDSVPAVAKS 326 >gi|166031716|ref|ZP_02234545.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC 27755] gi|166028169|gb|EDR46926.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC 27755] Length = 430 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 141/348 (40%), Gaps = 40/348 (11%) Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82 + L+D ++G V+ + AS TK+MT + + + + +T Sbjct: 49 PQNLYAQSAVLMDADSGRVLFGKEEEAIRPMASTTKIMTCIIALEHMTDNEI-----VTA 103 Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 S A+ P + ++G L + L L+++S ND AV +AE + + + FV+ MN + Sbjct: 104 SAYAASQPKVHLGVREGQQFYLRDILFSLMLESHNDSAVMVAEEIAGSVEAFVKMMNEKA 163 Query: 143 KNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQ---YMHYFQIKGLEI 195 + LGL+ THF+ +G+ H TTA ++A + D P+ ++ K Sbjct: 164 EELGLTKTHFVTPNGLDGEDEGGVHATTAMELAKIMKYCIMDSPEKEMFLDITGTKEYHF 223 Query: 196 KG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249 + N N + GA KTGFT +G+ V + + +++ I +L Sbjct: 224 RDLKGTSSYTCTNHNAFLTMMDGAISGKTGFTADAGYCYVGALRRDERTFIVALLACGWP 283 Query: 250 NT---RNKVSASLLSMGFYNKTDRKKINYIIK------------DFYQQNLSNEVPNISE 294 N + + L+ G N R + K + YQ+N EV + Sbjct: 284 NHKGYKWSDTKKLMEYGLANYEYRNVWQELPKQEIVVKDSGNDQNIYQKNSVAEVEIQQK 343 Query: 295 ----EVCTTQKEIINYNTQMKEAKD---KESHFIDFEKITLLKNKITK 335 +V E + + QM++A ++ + + L KN I K Sbjct: 344 PEVLKVLLRTDENVEISVQMEKALSAPVEKGQKVGEVRYILDKNIIGK 391 >gi|19746044|ref|NP_607180.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS8232] gi|19748212|gb|AAL97679.1| putative D,D-carboxypeptidase, penicillin-binding protein [Streptococcus pyogenes MGAS8232] Length = 411 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 138/301 (45%), Gaps = 29/301 (9%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++++ ++ + + + +A + + +++ ++G V+ E P ASLTK Sbjct: 2 IKRWAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 61 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V + + L+ + +S A ++ SN F + T ++ + L+ +V Sbjct: 62 LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQ-KTYSVQDLLEATLVA 120 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M G+++ +NA G+ Sbjct: 121 SSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALE 180 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+AI++ + DFP+ + + ++ G + N + G DG+ Sbjct: 181 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 240 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL RK Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKI 300 Query: 273 I 273 + Sbjct: 301 L 301 >gi|297582349|ref|YP_003698129.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] gi|297140806|gb|ADH97563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus selenitireducens MLS10] Length = 465 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 57/323 (17%) Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYY---TLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62 + A+ + + + AE + P L+D +G V+ E D P PAS+TK+M+ Sbjct: 8 ALAAVTVSAAVLVPTERAEASYEPTVDTVILVDAKSGRVLFERNIDQPLPPASMTKMMSE 67 Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSAND 118 Y++ + + T + IS + SN + ++ + + + SAN Sbjct: 68 YLILEAVNDGDISWDTNVPISDFLASLSHNRSLSNVPLRVDGEYNVEELYESVAIYSANA 127 Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNL------------------------GLSATHFMN 154 +A+AE + +E FV MN L GL + F+N Sbjct: 128 STMALAELISGSEGAFVSEMNEKGVELGLGTLMREAGGEYGLEDLGEISEEGLGSFQFVN 187 Query: 155 AHGVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---- 196 + G+ +Y +AR A L++ + D+P+ + I + Sbjct: 188 STGLPNRLLEGNHPEGTGAEEDNYMSARAAATLAYYLVNDYPEVLDVAGIPHKVFREGTG 247 Query: 197 -GKKYPNTNWAVGT-------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 PN N + + DG+KTG T A+GF + + Q L++V++GA Sbjct: 248 DAIDMPNWNNMIPGTENSHLDYEYVDGLKTGHTNAAGFTFTGTGEKDGQRLVSVVMGADS 307 Query: 249 RNTRNKVSASLLSMGFYNKTDRK 271 R + + +L GF + + Sbjct: 308 IEHRFQETQRVLEWGFNTFYEEE 330 >gi|302386883|ref|YP_003822705.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] gi|302197511|gb|ADL05082.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium saccharolyticum WM1] Length = 431 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 22/262 (8%) Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77 P + L+D +TG ++ D + PAS+TKLMTA +V K L Sbjct: 84 PSGITQPEIQSEGAVLMDASTGTLLYSKNGDTRYYPASITKLMTALLVAE-----KCSLP 138 Query: 78 TPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134 +T SK A+ E +G +T++ L L++KSAN++A +AE + + F Sbjct: 139 DTVTFSKAATTNLESGAVTLGLSEGDKLTVEQCLYGLMLKSANEVANGLAEHVSGSISAF 198 Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194 MN +K LG + T+F+N +G+ GHYTTA DMA+++ + Sbjct: 199 SALMNVRAKELGCTGTNFVNPNGLNSSGHYTTAHDMALIARAAFQ-NETVKKVTSTLSYQ 257 Query: 195 IK------GKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 I + + + + G G KTG+T +G +V + LIAVI Sbjct: 258 IPATKNASARTVSMGHKMLYPGDSRYYPGVIGGKTGYTSLAGNTLVTCVEKNGIRLIAVI 317 Query: 244 LGALDRNTRNKVSASLLSMGFY 265 + ++T + SLL GF Sbjct: 318 M--KSKSTHYADTKSLLDYGFA 337 >gi|171777393|ref|ZP_02919182.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283273|gb|EDT48697.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 410 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 138/325 (42%), Gaps = 33/325 (10%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 M++ ++A+ +L+ I ++ +T + ++ +TG V+ E P AS+TK Sbjct: 1 MKKVFAVLAL-LLAFIGNKVAADDTFNVAAKHAIAVEASTGKVLYEKDATTPDGIASMTK 59 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 ++T Y+ + + + T + IS A + SN + T++ + +V Sbjct: 60 ILTVYLTYKEIDKGNLSWDTKVPISDYAYDLTANSDASNVPMEARE-YTVEQLVNAAMVA 118 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 SAN A+A+AE + TE KFV M + G++ NA G+ Sbjct: 119 SANSAAIALAEKIGGTESKFVDMMQTQLQEWGINDAKLFNASGLNNSYLGDNIYPGSSST 178 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216 + +ARD+AI++ + T++P + + +G N+ + G DG+ Sbjct: 179 DENTLSARDVAIIAQHLITEYPDVLKISNQTTADFEGSTMNTYNYMLKGMPYERDGVDGL 238 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKK 272 KTG T +G + VA++ + +I+V++ A R + + +LL N Sbjct: 239 KTGTTELAGASFVATSTENGMRIISVVMNADGWQENEFARFEATNALLDYVKSNYEMTTL 298 Query: 273 INYIIKDFYQQNLSNEVPNISEEVC 297 ++ +N +V + E+ Sbjct: 299 VDAGES---TKNSKAKVIDGKEKTV 320 >gi|325292852|ref|YP_004278716.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] gi|325060705|gb|ADY64396.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3] Length = 390 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 12/259 (4%) Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76 PF++ AE ++D TG V+ + + PASL KLMT V+ L + + Sbjct: 33 APFIAKAE-----QAYMIDAETGTVLLSQNENQSFPPASLAKLMTVEVILDALAKGQVTP 87 Query: 77 TTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131 T +S+ A S S++++++ L +IV++AND + +AE + ++ Sbjct: 88 ETAYPVSEYAWRTGGAPSRTSTMFAALKSSVSVNDLLTGIIVQNANDGCIIVAEGMAGSD 147 Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191 F + M + LG++ + F N+ G+ G+ TTA+DM +L+ ++ +P F Sbjct: 148 SAFAKRMTVRAGELGMNRSVFANSTGLPDPGNQTTAKDMVLLAQHLRDTYPDRYGLFTKP 207 Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251 E N N +G G DG+ GF SGF V SA + + + + D T Sbjct: 208 DFEWNRIFQRNKNSLLGN--GIDGLGLGFAEGSGFAAVVSAEREGRRVYLALGSIADDKT 265 Query: 252 RNKVSASLLSMGFYNKTDR 270 R + ++ G R Sbjct: 266 RQDEARRVVDWGLTAFEKR 284 >gi|190576060|ref|YP_001973905.1| putative family S11 unassigned peptidase [Stenotrophomonas maltophilia K279a] gi|190013982|emb|CAQ47622.1| putative family S11 unassigned peptidase [Stenotrophomonas maltophilia K279a] Length = 264 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 126/254 (49%), Gaps = 10/254 (3%) Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80 S A LD T VI ++ D PASLTKLMTAY + ++E+ + Sbjct: 3 SPAPARAPLSSITLDAATFAVIHQHNADIARQPASLTKLMTAYAAYECVEERGRSWGDEV 62 Query: 81 TISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137 TI+ + A + G T+TL L+ L++ S ND A+AIA L ++ F++ Sbjct: 63 TIAADDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQPAFLER 122 Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197 MN ++ LGL ++ F + G+ H ++ARDMA+L+ + D PQ + + Sbjct: 123 MNRHARQLGLRSSWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVHGS 182 Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--DQ----SLIAVILGALDRNT 251 N N +G G DG+KTG+T A+GF + A+A + + LI V+LG+ R+ Sbjct: 183 FSRNNQNALLG-DDGVDGLKTGYTQAAGFCLAATACRAVPGRDQPVRLITVVLGSESRDA 241 Query: 252 RNKVSASLLSMGFY 265 R+ + L+ GF Sbjct: 242 RDALVRDQLAAGFA 255 >gi|50914161|ref|YP_060133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] gi|50903235|gb|AAT86950.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes MGAS10394] Length = 415 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 154/340 (45%), Gaps = 30/340 (8%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 ++++ ++ + + + + +A + + +++ ++G V+ E P ASLTK Sbjct: 6 IKRWAILFFVVLTCSGLSKIVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 65 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114 L+TAY+V +K + L+ + +S A + SN F K T ++ + L +V Sbjct: 66 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDK-KTYSVQDLLTATLVA 124 Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160 S+N A+A+AE + +E FV M + G+++ +NA G+ Sbjct: 125 SSNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALE 184 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216 + +A+D+A+++ R+ DFP+ + + + G + N + G DG+ Sbjct: 185 EENTLSAQDVAVVTMRLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGL 244 Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKK 272 KTG T +G +V ++I+ +I VIL A ++NTR + + LL R+K Sbjct: 245 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY-VARTYCRRK 303 Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312 I +++L + + E + +++ Q ++ Sbjct: 304 ILKKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQ 343 >gi|260437075|ref|ZP_05790891.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] gi|292810384|gb|EFF69589.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus DSM 2876] Length = 396 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 46/371 (12%) Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 M++ L +I +A++ N L+D ++G ++ + AS TK+ Sbjct: 1 MKKILAVIIIAVVMCQSVTKGEEPENLYARAAILIDADSGRILYGKNENDVMPMASTTKI 60 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119 MT V + + +T S A++ P KG TL+ L L++++S ND+ Sbjct: 61 MTLLVALKY-----GNPSDRVTFSSYAAKEPDVQLNALKGEQYTLNELLYLMMLRSYNDV 115 Query: 120 AVAIAESLCK-----------------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162 A+ +AE + K+F+ MN + LGLS T+F+ +G+ Sbjct: 116 AMMVAEYVGGVLNGDTSPNNTTEESKEDVKRFIDEMNGYAVKLGLSDTYFVTPNGLDGED 175 Query: 163 ----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLG 212 H TTA ++A+++ + + K + + N N + Sbjct: 176 EGRIHSTTAYELALIAREALKS-EEVIKICTTKSFSYREQNGKRSGTVTNGNRFLDINKN 234 Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD 269 A GMKTGFT +G+ V + D++ I+V+LG ++N + + L+S G N Sbjct: 235 AIGMKTGFTGKAGYCFVGATKVDDRTFISVVLGCGWPPNKNYKWADTGKLMSYGRDNYFY 294 Query: 270 R----KKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD--KESHF 320 R K +Y +++ Q+++ +P + + + E+ + +AK K+ Sbjct: 295 RNIFEKTYDYKEIKVENGLQESVGTYIPFEVNRLLSDEDEVDVIYEIISKAKAPVKKDEQ 354 Query: 321 IDFEKITLLKN 331 + +I + Sbjct: 355 VGKVRIYINGK 365 >gi|291536086|emb|CBL09198.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1] Length = 414 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 27/314 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D ++G ++ E AS TK++T + L + +T+S A+ Sbjct: 48 AKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LDSEVTVSTLAA 102 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P + ++G L + L L+++S ND AVAIAE + T F + MN+ ++ +G Sbjct: 103 SQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGC 162 Query: 148 SATHFMNAHGVVQHG----HYTTARDMAILSWRIKT---DFPQYMHYFQIKGLEI----- 195 ++F+ +G+ H+TTA D++++ Q++ + + Sbjct: 163 EDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDG 222 Query: 196 -KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251 N N + GA KTGFT +G+ V + + D++ I +L N Sbjct: 223 KNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTY 282 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTT-QKEIINY 306 + + L+ G + ++ I D + Q + + I EEV T + + Sbjct: 283 KWADTKKLMQYGISRFR-KISLDEIELDAGECAPVQVVDGQGTKIGEEVTTELEVAPVKE 341 Query: 307 NTQMKEAKDKESHF 320 N ++ KD+E H Sbjct: 342 NVELLIEKDQEVHI 355 >gi|168186274|ref|ZP_02620909.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] gi|169295810|gb|EDS77943.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str. Eklund] Length = 375 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 22/305 (7%) Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYY------TLLDTNTGHVIAENYPDHPWN 52 +R +I+ + +L NI PF+ E Y +D+ + V+ E + Sbjct: 4 LRVVSIILNICLLFNIAFVPFVEAVEPKNKSIYVDARCAIAMDSKSKCVLYEKNSEMLVP 63 Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112 AS TK+MT V + L +S A+ S +KKG ++L L L+ Sbjct: 64 IASTTKIMTTLVALKY-----GNLDRKFEVSPKAASIRGSKVGYKKGEQISLKELLYGLM 118 Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172 ++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D+A Sbjct: 119 LRSGNDAAITIAEGMSGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLAR 178 Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228 ++ + K + + +K ++ K + Y N N + A+G+KTG+T +G + Sbjct: 179 ITAKAK-ENKLFNEIVGVKDVDEKKFGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCL 237 Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-IIKDFYQQNLSN 287 V S + D +I V+L R K + + N +K + + D + N N Sbjct: 238 VTSVKENDDDVIIVVLNCT---PRWKETKKIYDFVKENYDFKKLASKNQVLDKVEDNRGN 294 Query: 288 EVPNI 292 ++ + Sbjct: 295 KINLV 299 >gi|323487044|ref|ZP_08092353.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] gi|323399635|gb|EGA92024.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum WAL-14163] Length = 486 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 116/251 (46%), Gaps = 25/251 (9%) Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS--- 87 L D + E D + PAS+TKLMTA +V ++ L +T S+NA Sbjct: 105 AVLYDALNNRFLFEQNADTRFYPASITKLMTALLVLE-----RSSLDDTVTFSENAVTNL 159 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 E K G ++ + + L++KSAN++A +AE + + F MN + +LG Sbjct: 160 EAGAVTLKIKAGDKFSVKDCMYALLLKSANEVANGLAEHVAGSVSGFADLMNQKAASLGC 219 Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWR-------------IKTDFPQYMHYFQIKGLE 194 + THF+N +G+ HYTTARDMA+++ + DFP ++ L Sbjct: 220 TNTHFVNPNGLNDSNHYTTARDMALIAKAAFENQTLSQIASTVSYDFPATASVPTVRKLT 279 Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254 + K N + G G KTG+T +G +V A + + LIAV+L + T Sbjct: 280 MGHKMVNPANG--EYYQGIVGGKTGYTSLAGNTLVTCAERDGKRLIAVVL--KSKQTHYT 335 Query: 255 VSASLLSMGFY 265 + +LL GF Sbjct: 336 DTKALLDYGFA 346 >gi|257867724|ref|ZP_05647377.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC30] gi|257874051|ref|ZP_05653704.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC10] gi|257801807|gb|EEV30710.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC30] gi|257808215|gb|EEV37037.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus EC10] Length = 444 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 128/314 (40%), Gaps = 43/314 (13%) Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK------------LPYYTLLDTNTGHVIAENYPDHP 50 F+ +A+ + + P +S A+ +D +TG V+ + + Sbjct: 10 SFVAALAILFAAVVIPLVSYADDTAMSIEEIQDFSIDAKAAYSIDFDTGKVLYDQDGETA 69 Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDN 106 AS+TK+++ Y+V +++ P+ IS A+ SN + T T+ + Sbjct: 70 MGIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKD 129 Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------ 160 ++SAN VA+AE + +E FV M ++ G++ +NA G+ Sbjct: 130 LYDASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGEN 189 Query: 161 --------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV 207 + +A+D+A+++ + DFP + + + Y N NW + Sbjct: 190 IYPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWML 249 Query: 208 GTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASL 259 F G DG+KTG T +G V +A++ Q +I V+L A + + R + L Sbjct: 250 PGFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRL 309 Query: 260 LSMGFYNKTDRKKI 273 + F + + Sbjct: 310 MDYSFDAWEQVEIL 323 >gi|222152530|ref|YP_002561705.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] gi|222113341|emb|CAR40940.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J] Length = 400 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 143/358 (39%), Gaps = 36/358 (10%) Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56 M++ L I + + L +A+ ++ TG ++ + + ASL Sbjct: 1 MKKTILSTIIVGLFLWTPSTLVLAQEKLVINAKQAIAVECETGKILYQKEANQKAPIASL 60 Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113 TK++T Y+ +K K TP+ +S A + P ++ T T+ + +V Sbjct: 61 TKILTVYLTLKEIKNGKISWDTPVKMSDYAKELANNPDVSNPSLYKDTFTVKELIDSSMV 120 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------V 159 S+N A+++AE++ +E +FV M + G+ +NA G+ Sbjct: 121 VSSNSAAISLAETIAGSEPQFVDMMKKQLQTWGIQDYQLVNASGLNNSMLNGHLYPKSKP 180 Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADG 215 + +A+++AI++ + ++FP+ + L N+N + LG DG Sbjct: 181 NDENQLSAKNLAIVASHLISEFPEILAISSQSQLYWGNDVLQNSNHLLPGLSMGRLGVDG 240 Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTD-- 269 +KTG T +G + +A+Q + +I VIL A D R + L F N Sbjct: 241 LKTGTTGCAGQTYIGTAVQDNMRVIVVILHANNAEQDSEARFVEANKLFDFAFQNFQSIT 300 Query: 270 -RKKINYIIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFID 322 K Y K +V IS + V + INY +++K K D Sbjct: 301 IPKAKPYATKLAIIDGKKKKVAFISHKDFTIVQPKNDDSINYKVIQEKSKTKAPIEKD 358 >gi|270292858|ref|ZP_06199069.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143] gi|270278837|gb|EFA24683.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143] Length = 414 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 130/306 (42%), Gaps = 36/306 (11%) Query: 15 NIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73 P +S + + ++ TG ++ E + P AS+TK++T Y+V+ L++ Sbjct: 16 TAIPTVSAQDFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKILTVYLVYEALEQGT 75 Query: 74 AMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129 L+TP+ IS + SN + T++ L+ +V SAN A+A+AE + Sbjct: 76 ISLSTPVDISDYPYQLTTNSEASNVPMEA-RKYTVEQLLEATLVSSANSAAIALAEKIAG 134 Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175 +EK FV M G+ +N G+ + +A D+AI++ Sbjct: 135 SEKDFVDKMRAKLLEWGIKDATIVNTTGLNNETLGNNIYPGSKKDEENKLSAYDVAIIAR 194 Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVAS 231 + D+PQ + + G + +TN+ + G DG+KTG T +G + V + Sbjct: 195 NLIRDYPQVLEITKKSSSTFAGMEIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGT 254 Query: 232 AIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 + +I V+L A +N R ++SLL NY +K Q+ + Sbjct: 255 TTEKGMRIITVVLNADQQNSNPYARFTATSSLLDY--------ITSNYALKTIVQKGEAY 306 Query: 288 EVPNIS 293 + +S Sbjct: 307 KDSKVS 312 >gi|307709107|ref|ZP_07645566.1| penicillin-binding protein 3 [Streptococcus mitis SK564] gi|307620053|gb|EFN99170.1| penicillin-binding protein 3 [Streptococcus mitis SK564] Length = 413 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN- 85 + ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ IS Sbjct: 28 AAKHAIAVEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSITLSTPVDISDYP 87 Query: 86 ---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142 + SN + T++ L+ +V SAN A+A+AE + +EK FV M Sbjct: 88 YQLTTNSEASNVPMEA-RNYTVEELLEATLVSSANSAAIALAEKIAGSEKNFVDMMRAKL 146 Query: 143 KNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYF 188 G+ +N G+ + +A D+AI++ + +PQ + Sbjct: 147 LEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLIKKYPQVLEIT 206 Query: 189 QIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244 + G +TN+ + G DG+KTG T +G + V + ++ +I V+L Sbjct: 207 KKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 266 Query: 245 GAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300 A + +R ++SL+ T RK + Q+ V + E+ T Sbjct: 267 NADHQDNNPYSRFTATSSLMDYISSTFTLRKVVQQGDA---YQDSKVPVQDGKEDTVTAV 323 Query: 301 KEIINYNTQMKEAKDKESHFIDFEKIT 327 Y ++ ++ S I F + Sbjct: 324 APEDIYL--IERGGNQSSQSIQFTPDS 348 >gi|322392110|ref|ZP_08065572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris ATCC 700780] gi|321145010|gb|EFX40409.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris ATCC 700780] Length = 413 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 141/350 (40%), Gaps = 33/350 (9%) Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72 ++ + + ++ TG ++ E P AS++KL+T Y+V+ L + Sbjct: 14 CASTTTVFAQDFNVPAKHAIAVEATTGKILYEKDATQPVEIASISKLLTVYLVYEALDQG 73 Query: 73 KAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128 K L+TP+ IS + SN + T++ L+ +V SAN A+A+AE + Sbjct: 74 KITLSTPVEISDYPYKLTTNSEASNVPMEA-RNYTVEELLEATLVSSANSAAIALAEKIA 132 Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILS 174 +EK FV M G+ +N+ G+ + +A D+A+++ Sbjct: 133 GSEKDFVDMMKAKLLEWGIQDATLVNSTGLNNETLGNNIYPGSKKDDENKLSAYDVAVVA 192 Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVA 230 + +PQ + + G +TN+ + G DG+KTG T +G + V Sbjct: 193 RNLILKYPQVLEITKKPSSTFAGMTIHSTNYMLEGLPAYRGGVDGLKTGTTDKAGASFVG 252 Query: 231 SAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKINYI-----IKDFY 281 + ++ +I V+L A ++NT R +++LL N + +N K Sbjct: 253 TTVEKGMRIITVVLNADNQNTNPYARFTATSALLDYISSNFALQTIVNQGESYQDSKSPV 312 Query: 282 QQNLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330 N V + E++ Q+ + + D H E T++ Sbjct: 313 LDGKQNTVAAVAKEDIKIVQRLGSRAQSSVTYTADTTEHTAPLEAGTVVG 362 >gi|213853083|ref|ZP_03382615.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 222 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 11/212 (5%) Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59 L ++ + P + +T P + L+D +G V+AE D +PASLTK+ Sbjct: 11 LAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70 Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIV 113 MT+YVV LK K LT +T+ K+A S K G +++ + K +I+ Sbjct: 71 MTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIII 130 Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173 +S ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L Sbjct: 131 QSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALL 190 Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205 + D P + K + PN N Sbjct: 191 GKALIHDVPDEYAIHKEKEFTFNNIRQPNRNR 222 >gi|268610236|ref|ZP_06143963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens FD-1] Length = 386 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 23/298 (7%) Query: 1 MRQFLV-IIAMAMLSNIFP--FLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPAS 55 M++ ++ +A +L + +S AE ++ L+ +TG ++ AS Sbjct: 1 MKRIIITALAPFILLGVSSERKVSAAERPEVSARGAVLISADTGEIVFSENFSEKLPMAS 60 Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115 TK+MT + L + +A S+ +G T+T +++ S Sbjct: 61 TTKIMTTLLCLES-----GDLYDEFVVDSDAIHVEGSSMGLVEGDTVTKYALCVGMLLPS 115 Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175 ND A A A L + + F MN+ +K LGLS T+F+ G+ GH ++A DMA+L+ Sbjct: 116 GNDAANACAVKLAGSLENFAVMMNDKAKELGLSHTYFVTPSGLEGDGHGSSAYDMAMLAR 175 Query: 176 RIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229 + + + +EI+ + NTN + + G G+KTGFT +G +V Sbjct: 176 EALRNEI-FREICSSENMEIEFGAPPYKRWLKNTNKLLSMYDGVYGVKTGFTDEAGRCLV 234 Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287 ++ + + LI V L DR+ N A + GF + ++ + D Y L+ Sbjct: 235 SACERDGKDLICVTLN--DRDDWNDHMA-MYDYGFETAAN---VDIPVPDGYSVRLAG 286 >gi|254976092|ref|ZP_05272564.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-66c26] gi|255093481|ref|ZP_05322959.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile CIP 107932] gi|255315225|ref|ZP_05356808.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-76w55] gi|255517894|ref|ZP_05385570.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-97b34] gi|255651009|ref|ZP_05397911.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-37x79] gi|260684078|ref|YP_003215363.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196] gi|260687737|ref|YP_003218871.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291] gi|260210241|emb|CBA64492.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile CD196] gi|260213754|emb|CBE05676.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile R20291] Length = 429 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 144/350 (41%), Gaps = 33/350 (9%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+ F + L+D +G ++ + PAS TK+ TA +V Sbjct: 15 FTSFLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K+ L I I K+ + S+ K G + T+ L L+V SAND A +A + Sbjct: 75 EVKD----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYV 129 Query: 128 CKT-EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ + Sbjct: 130 GGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMN-NDTFRQ 188 Query: 187 YFQIKGLEIKGKK-------YPNTNWAVGT--------------FLGADGMKTGFTCASG 225 + K L+ + K + NTN + + + DG+KTG+T A+G Sbjct: 189 IVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAG 248 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +++SA++ + +I + + + + S L+ GF N K + K+ Y Sbjct: 249 KCLLSSAVKDGRRVIVAVFNSTNADL-YLDSRILIDYGFDNF---KCATIVDKEKYTDTK 304 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 E + + + + + + + KI L K K Sbjct: 305 KVLFTKQHELIYEPKNSYRIFLEKDESQGN-YDTKTELNKIDLPIKKGAK 353 >gi|240146057|ref|ZP_04744658.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] gi|257201873|gb|EEV00158.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis L1-82] Length = 414 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 27/314 (8%) Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87 L+D ++G ++ E AS TK++T + L + +T+S A+ Sbjct: 48 AKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LDSEVTVSTLAA 102 Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147 P + ++G L + L L+++S ND AVAIAE + T F + MN+ ++ +G Sbjct: 103 SQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGC 162 Query: 148 SATHFMNAHGVVQHG----HYTTARDMAILSWRIKT---DFPQYMHYFQIKGLEI----- 195 ++F+ +G+ H+TTA D++++ Q++ + + Sbjct: 163 EDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDG 222 Query: 196 -KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251 N N + GA KTGFT +G+ V + + D++ I +L N Sbjct: 223 KNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTY 282 Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTT-QKEIINY 306 + + L+ G + ++ I D + Q + + I EEV T + + Sbjct: 283 KWADTKKLMQYGISRFR-KISLDEIELDAGEYAPVQVVDGQGTKIGEEVTTELEVAPVKE 341 Query: 307 NTQMKEAKDKESHF 320 N ++ KD+E H Sbjct: 342 NVELLIEKDQEVHI 355 >gi|221632531|ref|YP_002521752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum DSM 5159] gi|221157198|gb|ACM06325.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum DSM 5159] Length = 549 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 19/276 (6%) Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58 R ++ + +++ P A++ ++ ++D TG ++AE P ASLTK Sbjct: 4 RIVRCVLGLLIVALAIPIPVRADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTK 63 Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118 +MTA V + L P+TI S++ + G +TL L L+++S ND Sbjct: 64 VMTAVVALE-----RGALDQPVTIVPEDL-IGESSAGLRAGQVVTLRTLLYGLLLRSGND 117 Query: 119 IAVAIAESLCKTEKK--------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 A+AIA ++ + FV MN + LGL AT F N HG+ + GH ++A D+ Sbjct: 118 AAMAIARAVGGSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDL 177 Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230 A L+ R+ P ++ F +G + +TN + G G KTG+T +G ++ Sbjct: 178 ARLT-RVALADPVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLIE 236 Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266 A + ++ I V+ G+ +A LL G+ Sbjct: 237 VAERAGKTAIVVLTGS-TLAAWYDDAAKLLDYGWTK 271 >gi|154483906|ref|ZP_02026354.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC 27560] gi|149735397|gb|EDM51283.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC 27560] Length = 494 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 39/299 (13%) Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAET----------NKLPYY-----TLLDTNTGHVIA 43 M++ + ++I + ++S+ +++ K P L++ +TG V+ Sbjct: 12 MKKIISKILIVILLISSCIGTINVEPVTVNAATKTNWPKGPSIYGQTGVLIEASTGTVLY 71 Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGS 100 + + PAS+TK+MTA + K + +T S ++ +Y +N G Sbjct: 72 DKKCNKKMYPASITKIMTALLTIENCK-----MDEMVTFSDATIHSIQYGDANMGCSVGE 126 Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160 MT+ + L L+++SAN++A A+ E + + K F + MN +K G THF NA+G+ Sbjct: 127 KMTVKDCLYALMLQSANEVATALGEHIAGSTKNFAEMMNKRAKEAGALNTHFANANGLHD 186 Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----------WAV--G 208 HY TA DMA+++ + + IK T+ W Sbjct: 187 PNHYVTAYDMAMITRAASK-YSVFNDIVNTTTYTIKHNNKRKTDATAIQRHKMVWPTSGY 245 Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267 + G G KTGFT SG +V A + +LIAV+L + N K + LL GF N Sbjct: 246 YYDGIIGGKTGFTDQSGTTLVTYAKRNGMTLIAVVLHSNGTNV-YKDTKELLDYGFNNF 303 >gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile 630] gi|255101659|ref|ZP_05330636.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile QCD-63q42] gi|255307527|ref|ZP_05351698.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile ATCC 43255] gi|115251551|emb|CAJ69384.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein) [Clostridium difficile] Length = 429 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 144/350 (41%), Gaps = 33/350 (9%) Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67 + S+ F + L+D +G ++ + PAS TK+ TA +V Sbjct: 15 FTSFLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74 Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127 +K+ L I I K+ + S+ K G + T+ L L+V SAND A +A + Sbjct: 75 EVKD----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYV 129 Query: 128 CKT-EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186 +KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ + Sbjct: 130 GGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMN-NDTFRQ 188 Query: 187 YFQIKGLEIKGKK-------YPNTNWAVGT--------------FLGADGMKTGFTCASG 225 + K L+ + K + NTN + + + DG+KTG+T A+G Sbjct: 189 IVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAG 248 Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285 +++SA++ + +I + + + + S L+ GF N K + K+ Y Sbjct: 249 KCLLSSAVKDGRRVIVAVFNSTNADL-YLDSRILIDYGFDNF---KCATIVDKEKYTDTK 304 Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335 E + + + + + + + KI L K K Sbjct: 305 KVLFTKQHELIYEPKNSYRIFLEKDESQGN-YDTKTELNKIDLPIKKGAK 353 >gi|312127682|ref|YP_003992556.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Caldicellulosiruptor hydrothermalis 108] gi|311777701|gb|ADQ07187.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Caldicellulosiruptor hydrothermalis 108] Length = 451 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 39/303 (12%) Query: 1 MRQFL------VIIAMAMLSN