RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780435|ref|YP_003064848.1| peptidase S11,
D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter
asiaticus str. psy62]
         (336 letters)



>gnl|CDD|31872 COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope
           biogenesis, outer membrane].
          Length = 389

 Score =  230 bits (588), Expect = 4e-61
 Identities = 110/321 (34%), Positives = 159/321 (49%), Gaps = 10/321 (3%)

Query: 4   FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
             + +A A+ S      +  E        ++D ++G V+     D    PASLTKLMTAY
Sbjct: 15  VSLFLAAALASAQTVAAAAPEIAAKAAI-VIDADSGKVLYSKNADARRPPASLTKLMTAY 73

Query: 64  VVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
           VV   LK  K  L   +TIS+NA      S    K G T+T+ + LK L+V+SAND AVA
Sbjct: 74  VVLEALKAGKIKLDDKVTISENAWAKGGGSKMFLKPGETVTVRDLLKGLLVQSANDAAVA 133

Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
           +AE L  +E  FV  MN  +K LG+  THF+N  G+   G  TTARD+A+L+  +  D+P
Sbjct: 134 LAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNPGQVTTARDLALLARALIRDYP 193

Query: 183 QYMHYFQIKGLEIK--GKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
           +       K            N N      + G DG+KTG+T  +G+N+V SA +  + L
Sbjct: 194 EIYEISSTKSFTFPANKITQRNRNLLLWRKYPGVDGLKTGYTDEAGYNLVGSAKRNGRRL 253

Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
           IAV+LGA    TR + +A LL  GF N   RK    + K       S    + SE +   
Sbjct: 254 IAVVLGADSAKTRFEDAAKLLDWGFTNFETRK---ILKKGKAVAEESVWYGDKSEVLLGA 310

Query: 300 QKE--IINYNTQMKEAKDKES 318
           +++  +     + K+ K   +
Sbjct: 311 KEDVYLTLPKGEAKKLKASYT 331


>gnl|CDD|144388 pfam00768, Peptidase_S11, D-alanyl-D-alanine carboxypeptidase. 
          Length = 241

 Score =  170 bits (433), Expect = 4e-43
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 31  YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA---- 86
             L+D NTG V+ E   D     AS+TKLMTAYVV   LK  K     P+TIS+ A    
Sbjct: 15  AILVDYNTGKVLYEKNADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALG 74

Query: 87  SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
           +    SN   K G  +T+ + L+ L+V S ND AVA+AE +  +EK FV+ MN  +K LG
Sbjct: 75  NFRGSSNMFLKPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLG 134

Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE----IKGKKYPN 202
           L  T F+N  G+  HG Y++ARD+AIL+  +  D P+ +   + K       I    + N
Sbjct: 135 LKNTRFVNPTGLDNHGQYSSARDLAILARALIKDLPEVLSITKEKSATFNTPIYKINWMN 194

Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
           TN  +       DG+KTG+T  +G+ +VA+A +G   +I+V+L A
Sbjct: 195 TNGLLYRKGGNVDGLKTGYTKEAGYCLVATATEGGMRVISVVLNA 239


>gnl|CDD|31866 COG1680, AmpC, Beta-lactamase class C and other penicillin binding
           proteins [Defense mechanisms].
          Length = 390

 Score = 31.9 bits (71), Expect = 0.30
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 45  NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
             P   +  AS+TK  TA ++   ++E K  L  P+     +   P        G+ +TL
Sbjct: 83  VTPPTVFRIASVTKSFTATLLGKLVEEGKLDLDDPV-----SKYLPEGKDPATGGAPITL 137

Query: 105 DNAL 108
            + L
Sbjct: 138 RDLL 141


>gnl|CDD|32210 COG2027, DacB, D-alanyl-D-alanine carboxypeptidase
           (penicillin-binding protein 4) [Cell envelope
           biogenesis, outer membrane].
          Length = 470

 Score = 31.5 bits (71), Expect = 0.38
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 32  TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI--------TIS 83
           T+ D +TG    +   D   NPAS  KL+TA    S L       TT +         ++
Sbjct: 41  TVQDLDTGQPAYDYNADTMANPASTQKLLTALAALSVLGPDFR-FTTELYTSGVKNGVLN 99

Query: 84  KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
            N       + T  +     L   LK   V +  
Sbjct: 100 GNLYLRGSGDPTLTREDLTKLAPDLKASGVTAIT 133


>gnl|CDD|39420 KOG4219, KOG4219, KOG4219, G protein-coupled receptor [Signal
           transduction mechanisms].
          Length = 423

 Score = 28.8 bits (64), Expect = 2.1
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 17/130 (13%)

Query: 5   LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY- 63
           L+I A+A+L    P L  +   +L  Y   D  +  V    +P+H     + + LM  Y 
Sbjct: 155 LLIWALALLLA-LPQLLYSSVEELYLY---DGESRVVCVTAWPEHVCPTENESLLMQGYN 210

Query: 64  VVFSFLKEKKAMLT-----TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
            V  FL+    ++      T I ++      P      K          +K+LI+     
Sbjct: 211 YVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLII----- 265

Query: 119 IAVAIAESLC 128
             V +  ++C
Sbjct: 266 --VVVIFAIC 273


>gnl|CDD|143914 pfam00144, Beta-lactamase, Beta-lactamase.  This family appears to
           be distantly related to pfam00905 and PF00768
           D-alanyl-D-alanine carboxypeptidase.
          Length = 327

 Score = 28.6 bits (64), Expect = 2.5
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 20/89 (22%)

Query: 33  LLDTNTGHVIAENY-------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
           +  T  G V+ +                D  +  AS+TK  TA  V + ++  K  L  P
Sbjct: 19  VAVTRDGKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDP 78

Query: 80  ITISKNASEYPPSNSTFKKGSTMTLDNAL 108
           +      S+Y P  +   KG  +TL + L
Sbjct: 79  V------SKYLPEFAGSGKG-GVTLRDLL 100


>gnl|CDD|109392 pfam00332, Glyco_hydro_17, Glycosyl hydrolases family 17. 
          Length = 310

 Score = 28.5 bits (64), Expect = 2.9
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 77  TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
           +T +      + +PPSN +F+  +   +D  +  L
Sbjct: 127 STSVVFDILGNSFPPSNGSFRVETRSFVDPIIVFL 161


>gnl|CDD|29796 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha
           (2)-M). This group also contains the pregnancy zone
           protein (PZP).  Alpha(2)-M and PZP are broadly specific
           proteinase inhibitors. Alpha (2)-M is a major carrier
           protein in serum. The structural thioester of alpha
           (2)-M, is involved in the immobilization and entrapment
           of proteases.  PZP is a trace protein in the plasma of
           non-pregnant females and males which is elevated in
           pregnancy. Alpha (2)-M and PZ bind to placental
           protein-14 and may modulate its activity in T-cell
           growth and cytokine production contributing to fetal
           survival. It has been suggested that thioester bond
           cleavage promotes the binding of PZ and alpha (2)-M to
           the CD91 receptor clearing them from circulation..
          Length = 292

 Score = 27.5 bits (61), Expect = 5.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 43  AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
           +E  P + W   S    MTAY + + L      L   + I K
Sbjct: 223 SEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVK 264


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,810,786
Number of extensions: 191547
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 17
Length of query: 336
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,232,491
Effective search space: 1024262822
Effective search space used: 1024262822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)