RPSBLAST alignment of GI: 254780435 and protein with PDBid: 1tvf
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Length = 369
Score = 139 bits (350), Expect = 1e-33
Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 39/292 (13%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-- 86
P + + TG ++ + D WNPAS+TKLMT Y+ + + + L +T++
Sbjct: 35 PTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYI 94
Query: 87 --SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ SN+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K
Sbjct: 95 MSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKA 154
Query: 145 LGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+G+ THF+N G Q TTARD AIL + + P+ + + +
Sbjct: 155 IGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQ 214
Query: 191 KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
Y N+++ + G DG+KTG + + +N + +G + VI+GA
Sbjct: 215 LAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGA 274
Query: 247 LDRN------TRNKVSASLLSMGFYNKTDRK-----------KINYIIKDFY 281
D RN + +L+ F K K Y+ D Y
Sbjct: 275 GDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVENDLY 326