HHsearch alignment for GI: 254780436 and conserved domain: COG4235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].
Probab=98.60 E-value=2.4e-07 Score=56.70 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf 111112111122222222222222221111111112221211111111222122222222222111---11111222111
Q gi|254780436|r 156 QKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLAT---KNYDSALEDFK 232 (298)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~ 232 (298)
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-PEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999998498872449999999998444347999999998737998-8999999999999538844499999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 2232333888999999999998499899999999998617999899999999999
Q gi|254780436|r 233 FAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 233 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9984397328899999999998145999999999998518999823789999999