HHsearch alignment for GI: 254780436 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=98.84 E-value=1.1e-09 Score=69.50 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=132.2
Q ss_pred HHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99998-19989999999999981689989999999999972985222211111111111111112110000000112222
Q gi|254780436|r 43 SSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 (298)
Q Consensus 43 ~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCHH
T ss_conf 20342240799986014566634967589998999999860220579998666710477510777604402344475155
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111122221111111222222222221111111111121111222222222222222211111111122212111111
Q gi|254780436|r 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 (298)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (298)
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV---~~yLgkiS~e--~l~~~~~ 223 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIV---EFYLGKISEE--TLMERLK 223 (297)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH---HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHCCHH--HHHHHHH
T ss_conf 59999999844989807899999---87610786899999999987056765518799---9997040399--9999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHH
Q ss_conf 1122212222222222211111111222111223233388899999999999849989999999999861799----989
Q gi|254780436|r 202 LYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR----YYR 277 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~----~~~ 277 (298)
T Consensus 224 a~a~~n---------------------------~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~Ry 276 (297)
T COG4785 224 ADATDN---------------------------TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRY 276 (297)
T ss_pred HHHHHH---------------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 631212---------------------------89999999999999999861311788999999999887999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254780436|r 278 AKNGILRISQDL 289 (298)
Q Consensus 278 a~~~la~i~~~l 289 (298)
T Consensus 277 A~~EL~~l~q~~ 288 (297)
T COG4785 277 ALLELSLLGQDQ 288 (297)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999842311