HHsearch alignment for GI: 254780436 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=98.75 E-value=5.3e-09 Score=65.71 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 12221211111111222122222222222111111112221112232333888999999999998499899999999998
Q gi|254780436|r 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKAL 269 (298)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl 269 (298)
T Consensus 117 ~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 117 GEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8899999998436999-746666778999973675677899999998425884466658999997277989999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6179998999999999999742888
Q gi|254780436|r 270 SVDSRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 270 ~l~P~~~~a~~~la~i~~~lg~~~~ 294 (298)
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 6788763899989999840488677