HHsearch alignment for GI: 254780436 and conserved domain: KOG1550

Probab=95.02  E-value=0.0038  Score=33.90  Aligned_cols=82  Identities=22%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf             1998999999999998-----16899899999999999729-----8522221111111111111111211000000011
Q gi|254780436|r   48 SMGRRVNIDSLTAVIR-----AHPSDPEGYNVRGVVYGMNG-----DFEKALLDFQSALDLNPRYYKVYANRALIRYKMG  117 (298)
Q Consensus        48 ~~~~~~Ai~~~~~al~-----~~P~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  117 (298)
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550         262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCC
T ss_conf             66899999999999886256665047422479999998189875124999999999998559--9048999889876276


Q ss_pred             ---CCCCCCCCCCCCCC
Q ss_conf             ---22221111112222
Q gi|254780436|r  118 ---DVPMAIRDYGTALK  131 (298)
Q Consensus       118 ---~~~~a~~~~~~~~~  131 (298)
T Consensus       340 ~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550         340 KERDYRRAFEYYSLAAK  356 (552)
T ss_pred             CCCCHHHHHHHHHHHHH
T ss_conf             32138899999999997