HHsearch alignment for GI: 254780436 and conserved domain: PRK02603
>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=99.52 E-value=8.1e-15 Score=97.27 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 222222221111111122211122323338--8-8999999999998499899999999998617999899999999999
Q gi|254780436|r 211 YNGRGISYLATKNYDSALEDFKFAINLDPK--K-ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~--~-~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
T Consensus 38 Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~Y~kALeiNP~~~~AlNNlgvIY~ 117 (172)
T PRK02603 38 YYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALETYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99722577745799999999999872778962089999779999998699889999999999868997899999999999
Q ss_pred HHHHH
Q ss_conf 97428
Q gi|254780436|r 288 DLSST 292 (298)
Q Consensus 288 ~lg~~ 292 (298)
T Consensus 118 k~G~~ 122 (172)
T PRK02603 118 KRGRK 122 (172)
T ss_pred HHHHH
T ss_conf 98599