HHsearch alignment for GI: 254780436 and conserved domain: PRK10049
>PRK10049 pgaA outer membrane protein PgaA; Provisional.
Probab=98.97 E-value=3.3e-10 Score=72.22 Aligned_cols=261 Identities=12% Similarity=0.032 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 31999999999999819989999999999981689989999999999972985222211111111111111112110000
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
T Consensus 97 lp~~~l~~~Aka~Rn~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~~~~~~~p~~~~-~~~~aY~ 175 (818)
T PRK10049 97 LPARGLAAAARAYRNLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAKQLVAGAPDVAN-LLALAYI 175 (818)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHH
T ss_conf 997999999999863554677999999985029999407899999998638869999999998762897678-9999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------------------
Q ss_conf 0001122221111112222111111122222222222-------------------------------------------
Q gi|254780436|r 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRD------------------------------------------- 149 (298)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 149 (298)
T Consensus 176 ~~~~~~~~~aL~~~~~al~~~P~~~~~~~~y~~al~~~~i~~pA~~l~~~~p~l~~~~~~~~le~~~Aa~~vr~a~~~~~ 255 (818)
T PRK10049 176 YRLAGRHYDALRAMTEALRRAPSSQEVLTEYVQALQRNRIAAPALRLAKENPALDDAELTRQLEADAAAELVRLAFLPTR 255 (818)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98627429999999999976899989999999999866997189997652822078778878888899999762123342
Q ss_pred --------------------------------------------CCCCCCCCCCCCCCCCCCCC-CCCCCCCCC------
Q ss_conf --------------------------------------------11111111111211112222-222222222------
Q gi|254780436|r 150 --------------------------------------------ERYSDLQKAFADFDRAIQLK-TSDGRAWYG------ 178 (298)
Q Consensus 150 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------ 178 (298)
T Consensus 256 s~~er~~~ad~AL~~y~~L~~~~~~~p~a~~~y~rar~Drl~aL~~r~r~~~vi~eYq~L~a~~~~~P~Ya~~avadayL 335 (818)
T PRK10049 256 SESERYAIADRALAQYDALLTLWHKDPDAQADYQRARIDRLGALLVRDRYADVISEYQRLKAEGQKIPDYARRWVASAYL 335 (818)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 10244778999999899999860579853678999999999999987659999999999974689885799999999998
Q ss_pred ---------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCC
Q ss_conf ---------------------------------22211111111122212111111112221--------------2222
Q gi|254780436|r 179 ---------------------------------RALVYQMRGEYEKSIEDFSQAISLYSSIS--------------PDYY 211 (298)
Q Consensus 179 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 211 (298)
T Consensus 336 ~~~qP~kA~~iy~~l~~~~~~~~~~~~~e~~~~LfYA~~e~e~~~eA~~l~~~~~~~~p~~~~~~g~~~~~PNddy~~~~ 415 (818)
T PRK10049 336 DRRQPEKAAPILTELFYHPETIAPDLSDEELADLFYSLLESEQYPGALQVAVHTIETTPYFVRLYGLPTSIPNDDWLQGQ 415 (818)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 63996899999999973485457653567887789998611118999999998653289604306888898882799999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22222221111111122211122323338889999999999984998999999999986179998999999999999742
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~ 291 (298)
T Consensus 416 ~l~a~~~~~~ndL~~Ae~~le~l~~~APgN~~L~~~~A~v~r~Rg~pr~Ae~~~~~a~~l~P~~~~~~~~qa~~aldl~e 495 (818)
T PRK10049 416 SLLVQSLKASNDLPQAEKRLEELAYTAPGNQGLRIDYASVYQARGWPRAAENELKAAESLEPRSLNLEVAQAWTALTLQE 495 (818)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999757849999999999863999879999999999854995999999999870086427999889999886556
Q ss_pred HHH
Q ss_conf 888
Q gi|254780436|r 292 TVN 294 (298)
Q Consensus 292 ~~~ 294 (298)
T Consensus 496 wrq 498 (818)
T PRK10049 496 WRQ 498 (818)
T ss_pred HHH
T ss_conf 877