HHsearch alignment for GI: 254780436 and conserved domain: PRK10049
>PRK10049 pgaA outer membrane protein PgaA; Provisional.
Probab=97.97 E-value=1e-05 Score=47.88 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 19989999999999981689989999999999972985222211111111111111112110000000112222111111
Q gi|254780436|r 48 SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYG 127 (298)
Q Consensus 48 ~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (298)
T Consensus 78 ag~d~~v~~~~~~~~~~~~lp~~~l~~~Aka~Rn~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~ 157 (818)
T PRK10049 78 AGQDQEVITVYERYQSHMQLPARGLAAAARAYRNLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAK 157 (818)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 47777999999961888889979999999998635546779999999850299994078999999986388699999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 22221111111
Q gi|254780436|r 128 TALKINPDYDV 138 (298)
Q Consensus 128 ~~~~~~~~~~~ 138 (298)
T Consensus 158 ~~~~~~p~~~~ 168 (818)
T PRK10049 158 QLVAGAPDVAN 168 (818)
T ss_pred HHHHHCCCHHH
T ss_conf 98762897678