HHsearch alignment for GI: 254780436 and conserved domain: PRK12370
>PRK12370 invasion protein regulator; Provisional.
Probab=98.71 E-value=1.6e-09 Score=68.55 Aligned_cols=180 Identities=13% Similarity=0.007 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 89999999999981689989999999999972985---------222211111111111111112110000000112222
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDF---------EKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~---------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
T Consensus 277 n~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999998733977446678789999976340368828899999999999874387887888999999872355224
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111122221111111222222222221111111111121111222222222222222211111111122212111111
Q gi|254780436|r 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 (298)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (298)
T Consensus 357 a~~~f~rA~~L~Pnsa~~~Y~~~W~~--~maGr~~ea~~~i~~a~~LdP~~~~~~~~~l~~~~~~~~~d~a~~l~~~~~~ 434 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNL--FMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 47999876425998425799999999--9758689999999998835986520279999999984231079999998625
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1122212222222222211111111222111
Q gi|254780436|r 202 LYSSISPDYYNGRGISYLATKNYDSALEDFK 232 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 232 (298)
T Consensus 435 q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~ 465 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 0778783699999999973383899999998