HHsearch alignment for GI: 254780436 and conserved domain: PRK12370
>PRK12370 invasion protein regulator; Provisional.
Probab=98.55 E-value=2.3e-08 Score=62.27 Aligned_cols=254 Identities=12% Similarity=0.077 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999899999997231999999999999-8199---------89999999999981689989999999999972985222
Q gi|254780436|r 19 SKRRGYYSLLSVLVVSVILLIEGCSSLF-PSMG---------RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKA 88 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 88 (298)
T Consensus 278 ~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~a 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999987339774466787899999763403688288999999999998743878878889999998723552244
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111111111111211000000011222211111122221111111222222222221111111111121111222
Q gi|254780436|r 89 LLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL 168 (298)
Q Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
T Consensus 358 ~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~~i~~a~~LdP~~~~~~~~~l~~~~~~--~~~d~a~~l~~~~~~q 435 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH--TGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCC
T ss_conf 79998764259984257999999999758689999999998835986520279999999984--2310799999986250
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC---CCCCCC-H
Q ss_conf 222222222-2222111111111222121111111122212222222222211111-111222111223---233388-8
Q gi|254780436|r 169 KTSDGRAWY-GRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN-YDSALEDFKFAI---NLDPKK-A 242 (298)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~---~~~p~~-~ 242 (298)
T Consensus 436 ~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~~~-~~~~~~~~~~vn~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lp 514 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLP 514 (553)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 77878369999999997338389999999851-80311473245589999986005332689999976565214775011
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf --999999999998499899999999998617999
Q gi|254780436|r 243 --SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 243 --~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
T Consensus 515 l~~~~~g~~~~~~~~~~~~~~~~~w~~~~~~dprl 549 (553)
T PRK12370 515 LVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRL 549 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 24765146689999998651004889887319433