HHsearch alignment for GI: 254780436 and conserved domain: TIGR03302
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=2.1e-09 Score=67.89 Aligned_cols=192 Identities=18% Similarity=0.093 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 3199999999999981998999999999998168998---999999999997298522221111111111111111---2
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKV---Y 106 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 106 (298)
T Consensus 31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~ 110 (235)
T TIGR03302 31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999999999999878999999999999986899313799999999999976439999999999999887743499999
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11000000011222211111122221111111222222222221111111111121111222222222222222211111
Q gi|254780436|r 107 ANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMR 186 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (298)
T Consensus 111 y~~a~s~~~~~~~--------------------------~--~rDq~~~~~A~~~f~~~i~~yP~S~ya~d--------- 153 (235)
T TIGR03302 111 YLRGLSNYKQIDD--------------------------S--DRDQTAAREAFEAFQELIRRYPNSEYAPD--------- 153 (235)
T ss_pred HHHHHHHHHHCCC--------------------------C--CCCHHHHHHHHHHHHHHHHHCCCCHHHHH---------
T ss_conf 9987998873665--------------------------4--45808999999999999988899657999---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 1111222121111111122212222222222211111111222111223233388---8999999999998499899999
Q gi|254780436|r 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVK 263 (298)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~ 263 (298)
T Consensus 154 -----A~~~i---~~l~~-~LA~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A~~ 224 (235)
T TIGR03302 154 -----AKKRM---DYLRN-RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLAQD 224 (235)
T ss_pred -----HHHHH---HHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf -----99999---99999-9999999999999984170999999999998689985139999999999998699899999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780436|r 264 YYKKALS 270 (298)
Q Consensus 264 ~~~kAl~ 270 (298)
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHH
T ss_conf 9999975