HHsearch alignment for GI: 254780436 and conserved domain: pfam06552
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=95.28 E-value=0.0042 Score=33.67 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC---
Q ss_conf 899999999999816899899999999999729852----------2221111111111111111211000000011---
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE----------KALLDFQSALDLNPRYYKVYANRALIRYKMG--- 117 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--- 117 (298)
T Consensus 7 FE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~ds~~Mi~dAisKlEeAL~InP~khdalWclGNA~TS~~Fl~ 86 (186)
T pfam06552 7 FEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKKMIQDAISKLEEALVINPKKHDALWCIGNAYTSHAFLT 86 (186)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCC
T ss_conf 99999999998852984588898888999999861264479999999999999987139887533330054110151317
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------222211111122221111111
Q gi|254780436|r 118 --------DVPMAIRDYGTALKINPDYDV 138 (298)
Q Consensus 118 --------~~~~a~~~~~~~~~~~~~~~~ 138 (298)
T Consensus 87 pD~~~A~~~F~kA~~~Fq~AvdeeP~Nel 115 (186)
T pfam06552 87 PDQTEAKDNFDKATQFFQQAVDEQPDNDL 115 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 87899998899999999998634986189