RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780436|ref|YP_003064849.1| hypothetical protein
CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62]
(298 letters)
>gnl|CDD|39826 KOG4626, KOG4626, KOG4626, O-linked N-acetylglucosamine transferase
OGT [Carbohydrate transport and metabolism,
Posttranslational modification, protein turnover,
chaperones, Signal transduction mechanisms].
Length = 966
Score = 95.1 bits (236), Expect = 2e-20
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 3/238 (1%)
Query: 59 TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118
IR +P E Y+ + G + AL +++A++L P++ Y N A GD
Sbjct: 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD 165
Query: 119 VPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYG 178
+ +A++ + AL++NPD A GN+ + E L++A A + +AI+ + AW
Sbjct: 166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAE--GRLEEAKACYLKAIETQPCFAIAWSN 223
Query: 179 RALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLD 238
V+ +GE +I+ + +A+ L + Y N G Y + +D A+ + A+NL
Sbjct: 224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALNLR 282
Query: 239 PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296
P A N +Y QG A+ YK+AL + + A N + +D S V
Sbjct: 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAV 340
Score = 94.7 bits (235), Expect = 3e-20
Identities = 53/223 (23%), Positives = 108/223 (48%), Gaps = 3/223 (1%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
P+ + Y G VY F++A+ + AL+L P + + N A I Y+ G + +AI
Sbjct: 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308
Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185
Y AL++ P++ AY N +D+ + +A +++A++L + A +Y+
Sbjct: 309 YKRALELQPNFPDAYNNLANALKDK--GSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366
Query: 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFW 245
+G+ E++ + +A+ ++ + +N Y N D A+ +K A+ + P A
Sbjct: 367 QGKIEEATRLYLKALEVFPEFA-AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425
Query: 246 FNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288
N G Y+ G + A++ Y +A+ ++ + A + + I +D
Sbjct: 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468
Score = 71.2 bits (174), Expect = 3e-13
Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 43/221 (19%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
ID+ + P+ P+ YN G +A+ + AL L P + N I
Sbjct: 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174
+ G + A R Y AL++ P++ A +++L
Sbjct: 366 EQGKIEEATRLYLKALEVFPEFAAA------------HNNL------------------- 394
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP---DYYNGRGISYLATKNYDSALEDF 231
A +Y+ +G + +I + +A+ I P D + G +Y + +A++ +
Sbjct: 395 -----ASIYKQQGNLDDAIMCYKEAL----RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445
Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
AI ++P A N +Y+ G+ A++ Y+ AL +
Sbjct: 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486
Score = 66.2 bits (161), Expect = 1e-11
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 62 IRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121
+R P+ + N G +Y G E+A + AL++ P + + N A I + G++
Sbjct: 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406
Query: 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRAL 181
AI Y AL+I P + A GN Y++ D+ A + RAIQ+ + A A
Sbjct: 407 AIMCYKEALRIKPTFADALSNMGNTYKEM--GDVSAAIQCYTRAIQINPTFAEAHSNLAS 464
Query: 182 VYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212
+Y+ G ++I+ + A+ L PD+ +
Sbjct: 465 IYKDSGNIPEAIQSYRTALKL----KPDFPD 491
Score = 62.4 bits (151), Expect = 2e-10
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120
+R P+ + + G Y GD A+ + A+ +NP + + ++N A I G++P
Sbjct: 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473
Query: 121 MAIRDYGTALKINPDYDVAYIGR 143
AI+ Y TALK+ PD+ AY
Sbjct: 474 EAIQSYRTALKLKPDFPDAYCNL 496
Score = 30.8 bits (69), Expect = 0.46
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL 111
I T I+ +P+ E ++ +Y +G+ +A+ +++AL L P + Y N
Sbjct: 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498
>gnl|CDD|35767 KOG0547, KOG0547, KOG0547, Translocase of outer mitochondrial
membrane complex, subunit TOM70/TOM72 [Intracellular
trafficking, secretion, and vesicular transport].
Length = 606
Score = 77.8 bits (191), Expect = 3e-15
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 10/219 (4%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
A I+ P+ Y R Y EK DF A DL+P VY +R +R+ +
Sbjct: 349 FDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408
Query: 118 DVPMAIRDYGTALKINPDYDVAYIGRG-NIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176
AI D+ A+ ++P+ AYI +YR + ++ K F + + +
Sbjct: 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNL 467
Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN-----GRGISYLA-TKNYDSALED 230
+ L Q +++K+++ + +AI L N + + L ++ + A
Sbjct: 468 FAEILTDQ--QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENL 525
Query: 231 FKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKAL 269
+ AI LDPK + +G A++ ++K+
Sbjct: 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564
Score = 72.0 bits (176), Expect = 2e-13
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 10/220 (4%)
Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129
E +RG + + GD A DF +A+ L+P + +Y RA +D+ A
Sbjct: 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKA 386
Query: 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEY 189
++P+ Y RG + ++A ADF +AI L + A+ + +
Sbjct: 387 EDLDPENPDVYYHRGQMRF--LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI 444
Query: 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249
+S++ F +A + + P+ YN + +D A++ + AI L+P++ N
Sbjct: 445 AESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503
Query: 250 -------MVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282
+V + + A +KA+ +D + +A +
Sbjct: 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543
Score = 64.3 bits (156), Expect = 4e-11
Identities = 58/292 (19%), Positives = 90/292 (30%), Gaps = 55/292 (18%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
I T I P +P Y+ R Y GD+EK + D AL+LNP Y K RA
Sbjct: 135 IKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYI---------------------GRG--------- 144
++G A+ D T L I + A I
Sbjct: 195 QLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253
Query: 145 -NIYRDERYSDLQKAFAD-FDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202
Y ++D + F + D++ A + Y K+ + ++
Sbjct: 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG-----LEEGYLKAYDKATEECLG 308
Query: 203 YSSISPDYYNG-------------RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249
S S RG + + A EDF AI LDP S +
Sbjct: 309 SES-SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367
Query: 250 MVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRISQDLSSTVNEVNE 298
Y + K + KA +D Y + + + Q + + +
Sbjct: 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419
Score = 47.3 bits (112), Expect = 5e-06
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270
+G + K YD A++ + AI L P + F+ N YE G + ++ KAL
Sbjct: 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177
Query: 271 VDSRYYRA 278
++ Y +A
Sbjct: 178 LNPDYVKA 185
Score = 40.4 bits (94), Expect = 6e-04
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131
+G + N +++A+ + A++L P Y+NRA +GD I D AL+
Sbjct: 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177
Query: 132 INPDYDVAYIGRGNIYRDERYSDLQKAFAD 161
+NPDY A + R + + E+ +A D
Sbjct: 178 LNPDYVKALLRRASAH--EQLGKFDEALFD 205
Score = 38.5 bits (89), Expect = 0.002
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 163 DRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATK 222
A LKT G ++ +Y+++I+ ++QAI L P +Y+ R Y +
Sbjct: 113 KYAAALKT-KGNKFFRN-------KKYDEAIKYYTQAIEL-CPDEPIFYSNRAACYESLG 163
Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAV 262
+++ +ED A+ L+P +E G + A+
Sbjct: 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203
>gnl|CDD|29151 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 74.3 bits (182), Expect = 4e-14
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFA 234
A +Y G+Y++++E + +A+ L + D Y +Y Y+ ALED++ A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 235 INLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273
+ LDP A ++N G+ Y G Y A++ Y+KAL +D
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
Score = 69.0 bits (168), Expect = 1e-12
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129
E G +Y GD+++AL ++ AL+L+P Y N A YK+G A+ DY A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169
L+++PD AY G Y + ++A +++A++L
Sbjct: 61 LELDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKALELD 98
Score = 68.6 bits (167), Expect = 2e-12
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 139 AYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQ 198
A + GN+Y D +A +++A++L + A+Y A Y G+YE+++ED+ +
Sbjct: 2 ALLNLGNLYYKLG--DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 199 AISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
A+ L + Y G++Y Y+ ALE ++ A+ LDP
Sbjct: 60 ALELDPD-NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 62.4 bits (151), Expect = 1e-10
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
++ + P + + Y Y G +E+AL D++ AL+L+P K Y N L Y
Sbjct: 20 LEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79
Query: 115 KMGDVPMAIRDYGTALKINPD 135
K+G A+ Y AL+++P+
Sbjct: 80 KLGKYEEALEAYEKALELDPN 100
Score = 55.5 bits (133), Expect = 2e-08
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270
G Y +YD ALE ++ A+ LDP A ++N Y G Y A++ Y+KAL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 271 VDSRYYRAKNGILRISQDL 289
+D +A + L
Sbjct: 63 LDPDNAKAYYNLGLAYYKL 81
>gnl|CDD|36341 KOG1126, KOG1126, KOG1126, DNA-binding cell division cycle control
protein [Cell cycle control, cell division, chromosome
partitioning].
Length = 638
Score = 63.9 bits (155), Expect = 5e-11
Identities = 44/210 (20%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
P+ PE + G + + D + A+ F+ A+ L+PR+ Y + A++
Sbjct: 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477
Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185
+ AL ++P + A+ G G +Y + L+ A F +A+++ S+ +
Sbjct: 478 FRKALGVDPRHYNAWYGLGTVYL--KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535
Query: 186 RGEYEKSIEDFSQAISL-YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244
+K+++ + +AI L + Y+ R + Y AL++ + L P+++S
Sbjct: 536 LKRKDKALQLYEKAIHLDPKNPLCKYH--RASILFSLGRYVEALQELEELKELVPQESSV 593
Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
+ G +Y+ G+ A+ ++ AL +D +
Sbjct: 594 FALLGKIYKRLGNTDLALLHFSWALDLDPK 623
Score = 62.7 bits (152), Expect = 1e-10
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 3/177 (1%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
P Y + G +F+KA+ F+ AL ++PR+Y + + K + A
Sbjct: 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511
Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185
+ A++INP V G I + D KA +++AI L + Y RA +
Sbjct: 512 FQKAVEINPSNSVILCHIGRIQHQLKRKD--KALQLYEKAIHLDPKNPLCKYHRASILFS 569
Query: 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242
G Y +++++ + L S + G Y N D AL F +A++LDPK A
Sbjct: 570 LGRYVEALQELEELKELVPQESSVFA-LLGKIYKRLGNTDLALLHFSWALDLDPKGA 625
Score = 51.5 bits (123), Expect = 3e-07
Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
Query: 86 EKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP----DYDVAYI 141
+AL F+ + V + +++ + A R + +I P ++
Sbjct: 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395
Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201
++ + S L + D D + +W + ++ +++ +I+ F +AI
Sbjct: 396 TLWHLQDEVALSYLAQDLIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ 449
Query: 202 LYSSISPDY---YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258
L P + Y G +AT+ +D A++ F+ A+ +DP+ + W+ G VY Q
Sbjct: 450 L----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505
Query: 259 ANAVKYYKKALSVDSRYYRAKNGILRISQDL 289
A +++KA+ ++ I RI L
Sbjct: 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536
>gnl|CDD|36342 KOG1127, KOG1127, KOG1127, TPR repeat-containing protein [RNA
processing and modification].
Length = 1238
Score = 63.5 bits (154), Expect = 7e-11
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 114 YKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG 173
+ +A+ AL+++ A+ G IYRD D+++A FD+A +L +D
Sbjct: 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRD--SDDMKRAKKCFDKAFELDATDA 526
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLYSS-ISPDY-----YNGRGISYLATKNYDSA 227
A A Y E+S + + I L ++ +P + + RG YL N A
Sbjct: 527 EAAAASADTYA-----EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA 581
Query: 228 LEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287
+ +F+ A+ DPK + W G Y G Y++A+K + KA + + +
Sbjct: 582 VCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641
Query: 288 DL 289
D
Sbjct: 642 DN 643
Score = 38.5 bits (89), Expect = 0.002
Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 49/252 (19%)
Query: 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL 111
+ P+ + GV+ N DFE A F S L+P + AL
Sbjct: 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892
Query: 112 IRYKMGDV--PMAIRDYGTALKIN----PDYDVAY------IGRGNIYRD-ERYSDLQKA 158
I +G + + + + L + + GNI + A
Sbjct: 893 IPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952
Query: 159 FADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL---------YSSISPD 209
A+ + EY ++E ++ I L Y+ PD
Sbjct: 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012
Query: 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYE----------MQGSYA 259
G L+ ++SA K + W V E + +
Sbjct: 1013 A----GRLELSLGEFESA-------------KKASWKEWMEVDEDIRGTDLTLFFKNDFF 1055
Query: 260 NAVKYYKKALSV 271
++++++++ALS+
Sbjct: 1056 SSLEFFEQALSI 1067
Score = 35.8 bits (82), Expect = 0.014
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
Query: 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249
+I +A+SL ++ +N G+ N A F + +P W N G
Sbjct: 800 CTAIRCCKKAVSLCANNE-GLWNALGVLS-GIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857
Query: 250 MVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296
++ + +A + S+D G I + + + +
Sbjct: 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERL 904
Score = 34.2 bits (78), Expect = 0.040
Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 32/197 (16%)
Query: 78 VYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137
V G+ A F + P + + N ++ + D A + + ++P
Sbjct: 825 VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884
Query: 138 VAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA-----WYGRALVYQMRGEYEKS 192
V ++G I E + + F + +L + +G+A W ++ G E+S
Sbjct: 885 VQWLGEALI--PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942
Query: 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252
I + S S++ YY F +A N G
Sbjct: 943 INTARKISSA--SLALSYYFLGHPQL-----------CFAYAAN------------GSTL 977
Query: 253 EMQGSYANAVKYYKKAL 269
E Y A++ + +
Sbjct: 978 EHLEEYRAALELATRLI 994
Score = 31.2 bits (70), Expect = 0.33
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 38/131 (29%)
Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134
RG Y + A+ +FQSAL +P+ Y
Sbjct: 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYN------------------------------ 597
Query: 135 DYDVAYIGRGNIY-RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSI 193
++G G Y RYS K F +A L+ + A++ G+Y++++
Sbjct: 598 ----LWLGLGEAYPESGRYSHALKV---FTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650
Query: 194 EDFSQAISLYS 204
+ I +S
Sbjct: 651 DALGLIIYAFS 661
Score = 30.8 bits (69), Expect = 0.50
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 219 LATKNYDSALEDFKFAINLDPKKASFWFNGGMVY-EMQGSYANAVKYYKKALSVD 272
L K Y+ ALE K + DP + G+ + A ++Y A +D
Sbjct: 13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLD 67
Score = 30.0 bits (67), Expect = 0.79
Identities = 54/274 (19%), Positives = 79/274 (28%), Gaps = 61/274 (22%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+ + +R P D + G Y +G + AL F A L P A++
Sbjct: 582 VCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY----RDERYSDLQKAFADFDR------ 164
G A+ G + G +D + QK DF
Sbjct: 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701
Query: 165 ---AIQLKTSDGRAW---------------------YGRALVYQMRGE------------ 188
I SD W Y L Q+
Sbjct: 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLG 761
Query: 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLAT--------KNYDSALEDFKFAINLDPK 240
YE I S AI +Y +YN GI+YL K+ +A+ K A++L
Sbjct: 762 YECGIAHLSLAIHMYP-----WYN-LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815
Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
W N V G+ A A + K+ +
Sbjct: 816 NEGLW-NALGVLSGIGNVACAQHCFIKSRFSEPT 848
Score = 28.5 bits (63), Expect = 2.3
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 82 NGDFEKALLDFQSALDLNPRYY--KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVA 139
N ++E+AL + L +P Y +V+ AL D+ A Y A K++PD +A
Sbjct: 15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG-QDLEKAAEHYVLAAKLDPDNLLA 73
Query: 140 YIGRGNIYRDERY-SDLQKAFADFDRAIQLKTSD 172
+ G GN+Y DL +A + RA+ + +
Sbjct: 74 WKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107
Score = 27.7 bits (61), Expect = 3.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGR---GISYLATK-NYDSALEDFKFAINLDPKKAS 243
EYE+++E + + PD YN + G++ + + + A E + A LDP
Sbjct: 17 EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLL 72
Query: 244 FWFNGGMVYE 253
W G +YE
Sbjct: 73 AWKGLGNLYE 82
>gnl|CDD|32877 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 60.0 bits (145), Expect = 8e-10
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 154 DLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNG 213
D +A + ++A++ S A RA YQ GE + + E + +A+SL + + D N
Sbjct: 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108
Query: 214 RGISYLATKNYDSALEDFKFAINLD--PKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271
G A + A++ F+ A+ + + N G+ G + A +Y K+AL +
Sbjct: 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168
Query: 272 D 272
D
Sbjct: 169 D 169
Score = 49.2 bits (117), Expect = 1e-06
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 39/195 (20%)
Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134
+ Y GD+ +A + + AL+ +P YY + RA K+G+ +A Y AL + P
Sbjct: 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100
Query: 135 DYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIE 194
+ G++ + YG L Q G E++++
Sbjct: 101 N-------NGDVLNN---------------------------YGAFLCAQ--GRPEEAMQ 124
Query: 195 DFSQAIS--LYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252
F +A++ Y S N G+ L +D A E K A+ LDP+ ++
Sbjct: 125 QFERALADPAYGEPSDTLEN-LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183
Query: 253 EMQGSYANAVKYYKK 267
G YA A Y ++
Sbjct: 184 YKAGDYAPARLYLER 198
Score = 38.8 bits (90), Expect = 0.002
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
+ YL +Y A ++ + A+ DP Y+ G A + Y+KALS+
Sbjct: 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA 99
Query: 273 SR 274
Sbjct: 100 PN 101
Score = 31.1 bits (70), Expect = 0.41
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115
+L + PS + VR Y G+ + A ++ AL L P V N
Sbjct: 56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115
Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNI-YRDERYSDLQKAFADFDRAIQLKTSDGR 174
G A++ + AL +P Y N+ + +A RA++L
Sbjct: 116 QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174
Query: 175 AWYGRALVYQMRGEY 189
A A ++ G+Y
Sbjct: 175 ALLELARLHYKAGDY 189
Score = 27.2 bits (60), Expect = 5.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 249 GMVYEMQGSYANAVKYYKKALSVDSRYYRA 278
+ Y QG YA A K +KAL D YY A
Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLA 71
>gnl|CDD|35843 KOG0624, KOG0624, KOG0624, dsRNA-activated protein kinase inhibitor
P58, contains TPR and DnaJ domains [Defense mechanisms].
Length = 504
Score = 58.1 bits (140), Expect = 3e-09
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 18/224 (8%)
Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAI 123
A P+D E + G G AL + +A++ +P Y+ RA + MG A+
Sbjct: 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAAL 92
Query: 124 RDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG---RAWYGRA 180
+D L++ PD+ A I RG + + +L++A ADFD+ +Q + S+G A A
Sbjct: 93 QDLSRVLELKPDFMAARIQRGVVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150
Query: 181 LVYQMR------------GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSAL 228
L+ + G+ + +IE + + + R Y+A A+
Sbjct: 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAI 209
Query: 229 EDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
D K A L + + G N++K ++ L +D
Sbjct: 210 HDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253
Score = 48.5 bits (115), Expect = 2e-06
Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 27/233 (11%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
I+ +T ++ P D R Y G+ +KA+ D + A L+ + + + + Y
Sbjct: 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174
+GD ++++ LK++PD+ + + Y L+K + A Q
Sbjct: 235 TVGDAENSLKEIRECLKLDPDHKLCF---------PFYKKLKKVVKSLESAEQAIEE--- 282
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGIS---YLATKNYDSALEDF 231
+ + +E + + + YNG + Y + + A++
Sbjct: 283 ------------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330
Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILR 284
K +++DP + Y Y +A+ Y+KAL ++ RA+ G+ R
Sbjct: 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383
>gnl|CDD|35773 KOG0553, KOG0553, KOG0553, TPR repeat-containing protein [General
function prediction only].
Length = 304
Score = 58.1 bits (140), Expect = 3e-09
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246
+Y+++++ +++AI L + + YY R +Y Y+ A++D + A+++DP + +
Sbjct: 95 KDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153
Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289
G+ Y G Y A++ YKKAL +D K+ + Q L
Sbjct: 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196
Score = 49.3 bits (117), Expect = 1e-06
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
G + K+Y A++ + AI LDP A ++ N Y G Y +AVK + ALS+D
Sbjct: 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147
Query: 275 YYRA 278
Y +A
Sbjct: 148 YSKA 151
Score = 47.3 bits (112), Expect = 4e-06
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212
D Q+A + AI+L ++ + RA Y GEYE +++D A+S+ S Y
Sbjct: 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY-- 152
Query: 213 GR-GISYLATKNYDSALEDFKFAINLDPKKASFWFN 247
GR G++YLA Y+ A+E +K A+ LDP S+ N
Sbjct: 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN 188
Score = 47.3 bits (112), Expect = 4e-06
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+D T I P++ Y R Y G++E A+ D +SAL ++P Y K Y L
Sbjct: 101 VDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160
Query: 115 KMGDVPMAIRDYGTALKINPDYDVA 139
+G AI Y AL+++PD +
Sbjct: 161 ALGKYEEAIEAYKKALELDPDNESY 185
Score = 45.4 bits (107), Expect = 2e-05
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141
N D+++A+ + A++L+P Y NRA K+G+ A++D +AL I+P Y AY
Sbjct: 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153
Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188
G Y ++A + +A++L + + Q E
Sbjct: 154 RLGLAYLAL--GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198
>gnl|CDD|36340 KOG1125, KOG1125, KOG1125, TPR repeat-containing protein [General
function prediction only].
Length = 579
Score = 57.0 bits (137), Expect = 6e-09
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 16/215 (7%)
Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135
G NGD +A L F++A+ +P++ + + + + + + AI L+++P
Sbjct: 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT 351
Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195
A + Y +E +A D+ I+ K + + E KS D
Sbjct: 352 NLEALMALAVSYTNEGLQ--NQALKMLDKWIRNKPKYV---HLVSAGENEDFENTKSFLD 406
Query: 196 FSQ-----------AISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244
S A L + I PD +G G+ Y + +D A++ F+ A+ + P
Sbjct: 407 SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466
Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK 279
W G A+ Y +AL + Y R +
Sbjct: 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR 501
Score = 56.2 bits (135), Expect = 9e-09
Identities = 45/235 (19%), Positives = 93/235 (39%), Gaps = 16/235 (6%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
A ++ P E + G+ N + + A+ + L+L+P + A+ G
Sbjct: 308 FEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367
Query: 118 DVPMAIRDYGTALKINPDY--------DVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169
A++ ++ P Y + + + + +Q+ F + A QL
Sbjct: 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF--LEAARQLP 425
Query: 170 TS-DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY--YNGRGISYLATKNYDS 226
T D G ++Y + GE++++++ F A+ + + DY +N G + +
Sbjct: 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEE 482
Query: 227 ALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNG 281
A+ + A+ L P +N G+ G+Y AVK+ +ALS+ +
Sbjct: 483 AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKA 537
Score = 51.6 bits (123), Expect = 3e-07
Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 52/203 (25%)
Query: 2 YLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAV 61
L WI +K L S+ S L S + L A
Sbjct: 375 MLDKWIRNKPKYVHLVSAGENE-------------DFENTKSFLDSSHLAHIQELFLEAA 421
Query: 62 IRAHPS--DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119
R P+ DP+ + GV+Y ++G+F++A+ F++AL + P Y ++ NR
Sbjct: 422 -RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLW-NR---------- 469
Query: 120 PMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGR 179
G L N R E +A + ++RA+QL+ R Y
Sbjct: 470 ------LGATL-------------ANGNRSE------EAISAYNRALQLQPGYVRVRYNL 504
Query: 180 ALVYQMRGEYEKSIEDFSQAISL 202
+ G Y+++++ +A+S+
Sbjct: 505 GISCMNLGAYKEAVKHLLEALSM 527
>gnl|CDD|39847 KOG4648, KOG4648, KOG4648, Uncharacterized conserved protein,
contains LRR repeats [Function unknown].
Length = 536
Score = 56.7 bits (136), Expect = 8e-09
Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 3/185 (1%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
ID + I +P +P + R + Y F +A D ++A+ L+ Y K Y+ R R
Sbjct: 117 IDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174
+G+ A +D T L + P I K+ F A Q
Sbjct: 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQ-GMIQIL 235
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFA 234
+ + + D + + + N + + +
Sbjct: 236 PIKKPGYKFSKKAMRSVPVVDVVSPRA--TIDDSNQLRISDEDIDKIFNSNCGIIEEVKK 293
Query: 235 INLDP 239
N P
Sbjct: 294 TNPKP 298
Score = 49.4 bits (117), Expect = 1e-06
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212
S ++K D Q R Y +G+YE++I+ +S AI++Y +P Y+
Sbjct: 77 SPIEKQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHI 135
Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
R ++YL K++ A ED + AI LD + E G+ A K + L+++
Sbjct: 136 NRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE 195
Query: 273 SRYYRAKNGILRISQDLSS 291
+ K + ++S
Sbjct: 196 PKNIELK----KSLARINS 210
Score = 46.3 bits (109), Expect = 1e-05
Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 7/209 (3%)
Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134
RG Y G +E+A+ + +A+ + P + NRAL K A D A+ ++
Sbjct: 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162
Query: 135 DYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL--KTSDGRAWYGRALVYQMRGEYEKS 192
Y AY R E + +A D + + L K + + R + R KS
Sbjct: 163 LYVKAYSRRMQA--RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKS 220
Query: 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252
F+ A I P G + + D +
Sbjct: 221 TPGFTPARQGMIQILPI--KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDI 277
Query: 253 EMQGSYANAVKYYKKALSVDSRYYRAKNG 281
+ + + K + +G
Sbjct: 278 DKIFNSNCGIIEEVKKTNPKPTPMPDTSG 306
>gnl|CDD|35768 KOG0548, KOG0548, KOG0548, Molecular co-chaperone STI1
[Posttranslational modification, protein turnover,
chaperones].
Length = 539
Score = 54.2 bits (130), Expect = 4e-08
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
GD+ +A+ + A+ +P ++Y+NRA K+G+ P A++D ++++P++ AY+
Sbjct: 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA--WYGRALVYQMRGE-----YEKSIED 195
+G R + + KA + A++L S+ A Y R + Q E +++ D
Sbjct: 432 KGAALRAMK--EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMAD 489
Score = 53.5 bits (128), Expect = 6e-08
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 1/146 (0%)
Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210
+ + +KA + +R + + +G+Y ++++ +++AI
Sbjct: 336 KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARL 394
Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270
Y+ R YL Y AL+D K I LDP + G Y A++ Y++AL
Sbjct: 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454
Query: 271 VDSRYYRAKNGILRISQDLSSTVNEV 296
+D A +G R +
Sbjct: 455 LDPSNAEAIDGYRRCVEAQRGDETPE 480
Score = 43.8 bits (103), Expect = 5e-05
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
GDFE A+ F A+ L+P + +Y+NR+ +G A++D ++NPD+ Y
Sbjct: 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR 75
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188
+G D ++A + ++ S+ + G A Y
Sbjct: 76 KGAALFGL--GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA 119
Score = 43.8 bits (103), Expect = 6e-05
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+ T I+ P D Y+ R Y G++ +AL D + ++L+P + K Y +
Sbjct: 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437
Query: 115 KMGDVPMAIRDYGTALKINPD 135
M + A+ Y AL+++P
Sbjct: 438 AMKEYDKALEAYQEALELDPS 458
Score = 43.4 bits (102), Expect = 7e-05
Identities = 28/100 (28%), Positives = 42/100 (42%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
I T I P++ Y+ R Y G +EKAL D LNP + K Y+ + +
Sbjct: 22 IRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81
Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSD 154
+GD AI Y L+ +P G Y ++ +D
Sbjct: 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAAD 121
Score = 42.7 bits (100), Expect = 1e-04
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246
G++E +I F++AI L S + Y+ R +Y + +Y+ AL+D L+P A +
Sbjct: 16 GDFETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYS 74
Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVN 294
G G Y A+ Y + L D + K G+ + + +
Sbjct: 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQ 122
Score = 38.4 bits (89), Expect = 0.002
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 5/130 (3%)
Query: 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176
GD AIR + A+ ++P V Y R Y +KA D + +L + +
Sbjct: 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGY 73
Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAIN 236
+ G+YE++I +S+ + S + G +YL D F
Sbjct: 74 SRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEK 132
Query: 237 L--DPKKASF 244
L P
Sbjct: 133 LANLPLTNYS 142
Score = 29.6 bits (66), Expect = 1.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268
+G + ++ ++++A+ F AI L P + N Y GSY A+K K
Sbjct: 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT 62
>gnl|CDD|36370 KOG1155, KOG1155, KOG1155, Anaphase-promoting complex (APC), Cdc23
subunit [Cell cycle control, cell division, chromosome
partitioning, Posttranslational modification, protein
turnover, chaperones].
Length = 559
Score = 52.7 bits (126), Expect = 1e-07
Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 37/203 (18%)
Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGT 128
PE + Y + + EKA++ F+ AL LNP+Y + +M + AI Y
Sbjct: 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389
Query: 129 ALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188
A+ INP D RAWYG Y++
Sbjct: 390 AVDINP------------------------------------RDYRAWYGLGQAYEIMKM 413
Query: 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNG 248
+ ++ F +A+ L + + G Y + A++ +K AI L + S
Sbjct: 414 HFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472
Query: 249 GMVYEMQGSYANAVKYYKKALSV 271
+YE A +YY+K + V
Sbjct: 473 AKLYEELKDLNEAAQYYEKYVEV 495
Score = 51.1 bits (122), Expect = 4e-07
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNG---RGISYLATKNYDSALEDFKFAINLDP 239
Y +R E+EK++ F +A+ L +P Y + G Y+ KN +A+E ++ A++++P
Sbjct: 340 YSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395
Query: 240 KKASFWFNGGMVYEMQGSYANAVKYYKKALSV---DSRYYRA 278
+ W+ G YE+ + A+ Y++KAL + DSR + A
Sbjct: 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437
Score = 36.5 bits (84), Expect = 0.008
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 218 YLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY-EMQGSYANAVKYYKKALSVDSRYY 276
Y ++ A+ FK A+ L+PK S W G Y EM+ ++A A++ Y++A+ ++ R Y
Sbjct: 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA-AIESYRRAVDINPRDY 398
Query: 277 RAKNGI 282
RA G+
Sbjct: 399 RAWYGL 404
>gnl|CDD|36343 KOG1128, KOG1128, KOG1128, Uncharacterized conserved protein,
contains TPR repeats [General function prediction only].
Length = 777
Score = 51.9 bits (124), Expect = 2e-07
Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 11/159 (6%)
Query: 133 NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL-KTSDGRAWYGRALVYQMRGEYEK 191
Y G++ D +++A +L RA AL+ ++ +
Sbjct: 453 KDPDPRLYCLLGDVLHDPSL---------YEKAWELSNYISARAQRSLALLILSNKDFSE 503
Query: 192 SIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMV 251
+ + +++ + + + G G + L + +A++ F + L+P A W N
Sbjct: 504 ADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562
Query: 252 YEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLS 290
Y A + K+AL + ++++ + +S D+
Sbjct: 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601
Score = 45.8 bits (108), Expect = 1e-05
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 81 MNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD----- 135
N DF +A + +L++NP + ++ A++ + + + PD
Sbjct: 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW 556
Query: 136 --YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSI 193
AYI R ++AF A++ + W LV GE+E +I
Sbjct: 557 NNLSTAYI---------RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607
Query: 194 EDFSQAISL 202
+ + + + L
Sbjct: 608 KAYHRLLDL 616
Score = 38.8 bits (90), Expect = 0.002
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212
+ +R K D R + V YEK+ E +S Y S
Sbjct: 437 LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWE-----LSNYISARAQRSL 491
Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
L+ K++ A + + ++ ++P + WF G AVK + + ++++
Sbjct: 492 AL--LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549
Score = 36.5 bits (84), Expect = 0.009
Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 12/138 (8%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR--YKMGDVPMAI 123
DP Y + G V +EKA Y A R+L D A
Sbjct: 454 DPDPRLYCLLGDVLHDPSLYEKAWELS--------NYISARAQRSLALLILSNKDFSEAD 505
Query: 124 RDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183
+ +L+INP + G G Q A F R + L+ + AW + Y
Sbjct: 506 KHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563
Query: 184 QMRGEYEKSIEDFSQAIS 201
+ +++ +A+
Sbjct: 564 IRLKKKKRAFRKLKEALK 581
Score = 33.1 bits (75), Expect = 0.089
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115
L + +P + G + A+ F + L P + + N + +
Sbjct: 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565
Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ 167
+ A R ALK N + E Y + +F+ AI+
Sbjct: 566 LKKKKRAFRKLKEALKCN---------YQHWQIWENYMLVSVDVGEFEDAIK 608
>gnl|CDD|36522 KOG1308, KOG1308, KOG1308, Hsp70-interacting protein Hip/Transient
component of progesterone receptor complexes and an
Hsp70-binding protein [Posttranslational modification,
protein turnover, chaperones, Signal transduction
mechanisms].
Length = 377
Score = 49.7 bits (118), Expect = 9e-07
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141
+G+F+ A+ F SA++LNP +YA RA + K+ AIRD A++INPD Y
Sbjct: 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186
Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQL 168
RG R + ++A D A +L
Sbjct: 187 FRGYAERLL--GNWEEAAHDLALACKL 211
Score = 38.1 bits (88), Expect = 0.003
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246
GE++ +IE F+ AI L + Y R +L K ++A+ D FAI ++P A +
Sbjct: 128 GEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186
Query: 247 NGGMVYEMQGSYANAVKYYKKALSVD 272
G + G++ A A +D
Sbjct: 187 FRGYAERLLGNWEEAAHDLALACKLD 212
>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
that regulates K(+) uptake [Inorganic ion transport and
metabolism].
Length = 1018
Score = 49.6 bits (118), Expect = 1e-06
Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 22/238 (9%)
Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM--GDVPMAIRDYG 127
E + G Y GDFEKA + +L + + V L + + GD+ + +
Sbjct: 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLPLVGLGQMYIKRGDLEESKFCFE 366
Query: 128 TALKINPD-YDVAYIGRGNIY--RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQ 184
LK P+ Y+ I G +Y ++ KA + ++ D AW A + +
Sbjct: 367 KVLKQLPNNYETMKI-LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425
Query: 185 MRGEYEKSIEDFSQAISLY----SSISPDYYNGRGISYLATKNYDSALEDFKFAI----- 235
+ S++ + A+ + I P+ N + N + ALE FK A+
Sbjct: 426 QTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484
Query: 236 --NLDPKKA---SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288
N D K+ + +N + E A + YK L Y A + +++D
Sbjct: 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542
Score = 46.5 bits (110), Expect = 8e-06
Identities = 54/264 (20%), Positives = 92/264 (34%), Gaps = 59/264 (22%)
Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL-----DLNPRYYKVYA-----NRALIR 113
PE N ++ G+ EKAL F+SAL N K N A +
Sbjct: 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506
Query: 114 YKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG 173
++ D +A Y + LK +P Y AY+ G + RD+ ++L +A A+ + +S+
Sbjct: 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK--NNLYEASLLLKDALNIDSSNP 564
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAIS-------LYSSIS------PDYYNGRGISYLA 220
A ++ + E++ + + F + YS I+ +N
Sbjct: 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624
Query: 221 TKNYDSALEDFKFAINLDPKK----------------------------------ASFWF 246
K+ + AL+ + + DPK W
Sbjct: 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684
Query: 247 NGGMVYEMQGSYANAVKYYKKALS 270
N Y QG Y A++ Y+ L
Sbjct: 685 NLAHCYVEQGQYRLAIQMYENCLK 708
Score = 42.7 bits (100), Expect = 1e-04
Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 10/243 (4%)
Query: 35 VILLIEGCSSLFPSMGRRVNIDS-LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQ 93
LL++ L + D+ V++ P + + + D+ AL ++
Sbjct: 129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK 188
Query: 94 SALDLNPRYYKVYANRALIRY---KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDE 150
AL +NP R I + K+G A+ + AL+++P A + G + +
Sbjct: 189 KALRINPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246
Query: 151 RYSD-LQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI--SLYSSIS 207
SD +K RA + + A A + + +YE+ AI + SI
Sbjct: 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306
Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNG-GMVYEMQGSYANAVKYYK 266
+ + G SY A +++ A + + ++ D G G +Y +G + ++
Sbjct: 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366
Query: 267 KAL 269
K L
Sbjct: 367 KVL 369
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 4/160 (2%)
Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180
A + A KI+ D + + E + A A F ++ + A G+A
Sbjct: 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKA 171
Query: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
+ + +Y +++ + +A+ + + D G G + + AL F+ A+ LDP
Sbjct: 172 RIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231
Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN 280
S + E+ ++ ++ YKK + + R Y+ N
Sbjct: 232 CVSALV---ALGEVDLNFNDSDS-YKKGVQLLQRAYKENN 267
Score = 36.1 bits (83), Expect = 0.012
Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 13/183 (7%)
Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120
+++ HP + Y G + + +A L + AL+++ + + K +
Sbjct: 522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581
Query: 121 MAIRDYGTALKINPDYDVAY--IGRGNIYRDERYSD----------LQKAFADFDRAIQL 168
A + + T LK AY I GN+Y ++ +KA + + ++
Sbjct: 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641
Query: 169 KTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSAL 228
+ A G +V +G + ++ + FSQ S + N Y+ Y A+
Sbjct: 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC-YVEQGQYRLAI 700
Query: 229 EDF 231
+ +
Sbjct: 701 QMY 703
Score = 33.0 bits (75), Expect = 0.090
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+ V+R P + N G+V G F +A F + + V+ N A
Sbjct: 632 LQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691
Query: 115 KMGDVPMAIRDYGTALKI---NPDYDV-AYIGRGNIYRDERYSDLQKAFADFDRAIQLKT 170
+ G +AI+ Y LK +V Y+ R Y + Q+A +A L
Sbjct: 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA-WYEAGKL---QEAKEALLKARHLAP 747
Query: 171 SDGRAWYGRALVYQMRGE 188
S+ + ALV + E
Sbjct: 748 SNTSVKFNLALVLKKLAE 765
>gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 486
Score = 49.0 bits (116), Expect = 2e-06
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 82 NGDFEKALLDFQSALDLNPRYY----KVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137
NG++ KA + AL+++P K+Y NRAL+ ++G + AI D ALKI+ Y
Sbjct: 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321
Query: 138 VAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS 197
A + R N + ++A D+++A+QL+ + + E + +++
Sbjct: 322 KALLRRANCHLA--LEKWEEAVEDYEKAMQLEKD--------CEIRRTLREAQLALK--- 368
Query: 198 QAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF--------WFNGG 249
S D+Y GIS A+ + K A+ P K + + G
Sbjct: 369 ------KSKRKDWYKILGISRNASDDEIKK-AYRKLALVHHPDKNAGSQKEAEAKFKEVG 421
Query: 250 MVYEMQGSYANAVKYYKKALS 270
Y + V++
Sbjct: 422 EAYTILSDPMKRVRFDSGQDL 442
Score = 47.0 bits (111), Expect = 6e-06
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
G ++ K Y +AL+++ FAI++ P AS++ N M G + A+ ++++ +
Sbjct: 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK 113
Query: 273 SRYYRAKNGILRISQD 288
+ + + LR Q
Sbjct: 114 DGFSKGQ---LREGQC 126
Score = 37.0 bits (85), Expect = 0.007
Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 29/217 (13%)
Query: 84 DFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAY--- 140
+ AL ++ A+D+ P Y+NRA +G A+ D ++++ +
Sbjct: 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123
Query: 141 ----------IGRGNIYRDERYSDLQKAFADFDRAIQL---KTSDGRAWYGRALVYQMRG 187
I + ++ A ++ + + +A +A G
Sbjct: 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183
Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP-------- 239
+Y+++ + + L + + + RG+ N D A+ F+ A+ LDP
Sbjct: 184 DYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242
Query: 240 ----KKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
KK G G+Y A + Y +AL++D
Sbjct: 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279
Score = 32.4 bits (73), Expect = 0.15
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 142 GRGN-IYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI 200
GN Y+ + Y + A ++ AI + + + RA M G +E+++ D Q++
Sbjct: 54 EEGNAFYKQKTYGN---ALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV 110
Query: 201 SLYSSIS 207
L S
Sbjct: 111 RLKDGFS 117
>gnl|CDD|35597 KOG0376, KOG0376, KOG0376, Serine-threonine phosphatase 2A,
catalytic subunit [General function prediction only].
Length = 476
Score = 48.7 bits (116), Expect = 2e-06
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
F+ A+ + A++L+P +ANRAL K+ A+ D A++++P Y AY+
Sbjct: 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77
Query: 143 RGNIY-RDERYSDLQKAFADFDRAIQLKTSD 172
RG + KA D ++ +L +D
Sbjct: 78 RGTAVMALGEFK---KALLDLEKVKKLAPND 105
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246
++ +++ +S+AI L + Y+ R +++L +++ AL D AI LDP +
Sbjct: 18 KVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYV 76
Query: 247 NGGMVYEMQGSYANAVKYYKKALSVD 272
G G + A+ +K +
Sbjct: 77 RRGTAVMALGEFKKALLDLEKVKKLA 102
Score = 39.5 bits (92), Expect = 0.001
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+D + I P+ + R + + F AL D A++L+P Y K Y R
Sbjct: 24 VDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83
Query: 115 KMGDVPMAIRDYGTALKINPD 135
+G+ A+ D K+ P+
Sbjct: 84 ALGEFKKALLDLEKVKKLAPN 104
Score = 33.3 bits (76), Expect = 0.087
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 164 RAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN 223
+AI+L + + RAL + + ++ D +AI L + Y RG + +A
Sbjct: 29 KAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR-RGTAVMALGE 87
Query: 224 YDSALEDFKFAINLDPKK 241
+ AL D + L P
Sbjct: 88 FKKALLDLEKVKKLAPND 105
Score = 33.3 bits (76), Expect = 0.093
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276
L K +D A++ + AI LDP A ++ N + + S+ A+ KA+ +D Y
Sbjct: 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72
Query: 277 RA 278
+A
Sbjct: 73 KA 74
>gnl|CDD|34396 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 48.4 bits (115), Expect = 2e-06
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 16/199 (8%)
Query: 45 LFPSMG-RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY 103
L+ S+G R + + + + P PE +N G+ G+F+ A F S L+L+P Y
Sbjct: 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133
Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPD--YDVAYIGRGNIYRDERYSDLQKAFAD 161
+ NR + Y G +A D + +P+ + + +Y +E+ D ++A +
Sbjct: 134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW-----LYLNEQKLDPKQAKTN 188
Query: 162 FDRAIQLKTSDGRAWYGRALVYQMRG-----EYEKSIEDFSQAISLYSSISPDYYNGRGI 216
+ + + SD W G +V G + ++ + + + + Y G
Sbjct: 189 LKQ--RAEKSDKEQW-GWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK 245
Query: 217 SYLATKNYDSALEDFKFAI 235
YL+ + D A FK A+
Sbjct: 246 YYLSLGDLDEATALFKLAV 264
Score = 42.3 bits (99), Expect = 2e-04
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134
RGV+Y G A DF AL + P +V+ + + G+ A + + L+++P
Sbjct: 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130
Query: 135 DYDVAYIGRG-NIYRDERYSDLQKAFADF 162
Y+ A++ RG +Y RY Q F
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAF 159
Score = 41.9 bits (98), Expect = 2e-04
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 155 LQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGR 214
+A D +RA L + R ++Y G + DFSQA+++ + P+ +N
Sbjct: 55 ASRALTDEERAQLL--------FERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYL 105
Query: 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258
GI N+D+A E F + LDP N G+ G Y
Sbjct: 106 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRY 149
Score = 26.5 bits (58), Expect = 8.7
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273
RG+ Y + A DF A+ + P + G+ G++ A + + L +D
Sbjct: 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130
Query: 274 RY 275
Y
Sbjct: 131 TY 132
>gnl|CDD|39435 KOG4234, KOG4234, KOG4234, TPR repeat-containing protein [General
function prediction only].
Length = 271
Score = 48.6 bits (115), Expect = 2e-06
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 82 NGDFEKALLDFQSALDLNPRYYK-----VYANRALIRYKMGDVPMAIRDYGTALKINPDY 136
NGD+E+A +Q AL+ P +Y+NRA K+ AI D A+++NP Y
Sbjct: 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167
Query: 137 DVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175
+ A R Y E+ ++A D+ + ++ S A
Sbjct: 168 EKALERRAEAY--EKMEKYEEALEDYKKILESDPSRREA 204
Score = 47.0 bits (111), Expect = 6e-06
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 149 DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP 208
+E ++++K F+D ++ ++ +D G L G+YE++ + +A+ S S
Sbjct: 73 EELMAEIEKIFSDEEKDKAIEKADSLKKEGNELF--KNGDYEEANSKYQEALESCPSTST 130
Query: 209 D----YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKY 264
+ Y+ R + + + ++SA+ED AI L+P YE Y A++
Sbjct: 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALED 190
Query: 265 YKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298
YKK L D A+ I R+ +NE NE
Sbjct: 191 YKKILESDPSRREAREAIARLPP----KINERNE 220
Score = 31.6 bits (71), Expect = 0.24
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131
Y+ R +E A+ D A++LNP Y K RA KM A+ DY L+
Sbjct: 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196
Query: 132 INPDYDVA 139
+P A
Sbjct: 197 SDPSRREA 204
>gnl|CDD|34615 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 48.1 bits (114), Expect = 3e-06
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
L A+P D E +G NG+F +A+ + A L P ++ + ++G
Sbjct: 89 LQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148
Query: 118 DVPMAIRDYGTALKINPDYDVAY--IGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175
A R Y AL++ P+ +G + R DL+ A A +D R
Sbjct: 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRG----DLEDAETLLLPAYLSPAADSRV 204
Query: 176 WYGRALV 182
ALV
Sbjct: 205 RQNLALV 211
Score = 40.8 bits (95), Expect = 5e-04
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
Query: 160 ADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYL 219
A A L+ + + A +RG+ + S+ + ++ + +G + +
Sbjct: 53 AAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQK-SAIAYPKDRELLAAQGKNQI 111
Query: 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK 279
N+ A+ + A L P W G + G + A + Y++AL +
Sbjct: 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171
Query: 280 NGILRISQDLSS 291
N + +S L
Sbjct: 172 NNLG-MSLLLRG 182
Score = 40.4 bits (94), Expect = 6e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210
R + +A + +A +L +D AW G ++++ + QA+ L + P
Sbjct: 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSI 170
Query: 211 YNGRGISYLATKNYDSA 227
N G+S L + + A
Sbjct: 171 ANNLGMSLLLRGDLEDA 187
Score = 32.7 bits (74), Expect = 0.12
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122
P++P N G+ + GD E A A +V N AL+ GD A
Sbjct: 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221
>gnl|CDD|32776 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism].
Length = 389
Score = 46.4 bits (110), Expect = 8e-06
Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 32/244 (13%)
Query: 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYAN 108
MGRR D V+G+ + ++ +KA+ F L +P ++ +
Sbjct: 19 MGRRSAQQDKQDQANRLSRD----YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLT 74
Query: 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADF------ 162
+ G+V AIR + T L+ +PD ++R LQ+ D+
Sbjct: 75 LGNLFRSRGEVDRAIRIHQTLLE-SPDLTF----------EQRLLALQQLGRDYMAAGLL 123
Query: 163 DRA----IQLKTSDGRAWYGR---ALVYQMRGEYEKSIEDFSQAISL----YSSISPDYY 211
DRA QL A +YQ E+EK+I+ + + L Y +Y
Sbjct: 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183
Query: 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271
LA+ + D A E K A+ D K G V +G Y AV+ ++ L
Sbjct: 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243
Query: 272 DSRY 275
+ Y
Sbjct: 244 NPEY 247
>gnl|CDD|35716 KOG0495, KOG0495, KOG0495, HAT repeat protein [RNA processing and
modification].
Length = 913
Score = 45.4 bits (107), Expect = 2e-05
Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 31/222 (13%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
+ E+AL + AL P ++K++ I +M ++ MA Y K P+ ++
Sbjct: 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724
Query: 143 RGNIYRDERYSDLQKAFADFDRA--------------IQLKTSDGRAWYGRALVYQMRGE 188
+ +E+ L +A + DRA I+++ G L+ + E
Sbjct: 725 LAKL--EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782
Query: 189 YEKSIEDFSQAISLYS-----SISPDY-----YNGR-----GISYLATKNYDSALEDFKF 233
S +++AI L + S D ++ + + K + A E F+
Sbjct: 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER 842
Query: 234 AINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275
A+ DP W G+ + + KK + + +
Sbjct: 843 AVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884
>gnl|CDD|37287 KOG2076, KOG2076, KOG2076, RNA polymerase III transcription factor
TFIIIC [Transcription].
Length = 895
Score = 44.6 bits (105), Expect = 3e-05
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120
VI+ P +P Y G +Y GD EKAL + A LNP+ Y+++ A + ++G++
Sbjct: 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224
Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW---- 176
A Y A++ NP R ++Y ++ DL++A F + +QL
Sbjct: 225 QARYCYSRAIQANPSNWELIYERSSLY--QKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282
Query: 177 -YGRALVYQMRGEYEKSIEDFSQAISLYSSIS--PDYYNGRGISYLATKNYDSALEDFKF 233
A + E E++ + A+S + D + +L K D AL
Sbjct: 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL-FLKNKQSDKALMKIVD 341
Query: 234 AINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288
N + +K ++ E + NA+ K LS D R R ++ + +
Sbjct: 342 DRNRESEKDDSEWD---TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393
Score = 38.0 bits (88), Expect = 0.003
Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 37/257 (14%)
Query: 59 TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR----- 113
+ I+A+PS+ E R +Y GD ++A+ F L L+P + LIR
Sbjct: 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHY 289
Query: 114 -YKMGDVPMAIRDYGTALKIN------PDYDV---------AYIGRGNIYRDERYSDLQK 157
+ A + AL D ++ D+R + +K
Sbjct: 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349
Query: 158 AFADFDRAIQLK-------------TSDGRAWYGRALVYQMR-GEYEKSIEDFSQAISLY 203
+++D + + + D R + ++ E +++ F +++
Sbjct: 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409
Query: 204 SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF-WFNGGMVYEMQGSYANAV 262
S D Y + Y AL N + + +F W+ Y G Y A+
Sbjct: 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469
Query: 263 KYYKKALSVDSRYYRAK 279
++Y+K L + A+
Sbjct: 470 EFYEKVLILAPDNLDAR 486
Score = 36.1 bits (83), Expect = 0.012
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)
Query: 152 YSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYY 211
DL++A I+ + A+Y +Y+ RG+ EK++ + A L + +
Sbjct: 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELW 210
Query: 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271
N + A + AI +P + +Y+ G A++ + + L +
Sbjct: 211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270
Query: 272 DS 273
D
Sbjct: 271 DP 272
Score = 34.5 bits (79), Expect = 0.031
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP-DYDVAYI 141
GD E+A + +PR Y I + GD+ A+ + A +NP DY++
Sbjct: 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212
Query: 142 GRGNIY-RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI 200
+ E+ ++ +A + RAIQ S+ Y R+ +YQ G+ ++++E F Q
Sbjct: 213 ----LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ-- 266
Query: 201 SLYSSISPDYY 211
L P
Sbjct: 267 -LLQLDPPVDI 276
Score = 29.5 bits (66), Expect = 1.2
Identities = 14/92 (15%), Positives = 38/92 (41%)
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242
G+Y++++ S + + + Y+ Y+ A+E ++ + L P
Sbjct: 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483
Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
+Y+ G++ A++ ++ ++ D R
Sbjct: 484 DARITLASLYQQLGNHEKALETLEQIINPDGR 515
>gnl|CDD|36388 KOG1173, KOG1173, KOG1173, Anaphase-promoting complex (APC), Cdc16
subunit [Cell cycle control, cell division, chromosome
partitioning, Posttranslational modification, protein
turnover, chaperones].
Length = 611
Score = 43.8 bits (103), Expect = 5e-05
Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 13/232 (5%)
Query: 57 SLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM 116
++ P + G K L +DL P + +
Sbjct: 266 ITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325
Query: 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176
G A R + A ++P + A++ G+ + E D +A A + A +L
Sbjct: 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD--QAMAAYFTAARLMPGCHLPS 383
Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSA-------LE 229
+ Y + + + F QA+++ S P + G+ + Y A LE
Sbjct: 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442
Query: 230 DFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV---DSRYYRA 278
K +N N G Y Y A+ YY+KAL + D+ + +
Sbjct: 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494
Score = 43.0 bits (101), Expect = 9e-05
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 30/164 (18%)
Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135
G+ Y + + A F+ AL + P + L+ +++G V +Y ALK
Sbjct: 387 GMEYMRTNNLKLAEKFFKQALAIAP-------SDPLVLHELGVVAYTYEEYPEALKY--- 436
Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195
QKA + K Y+ +YE++I+
Sbjct: 437 -------------------FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477
Query: 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP 239
+ +A+ L S + G Y N D A++ F A+ L P
Sbjct: 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520
Score = 36.1 bits (83), Expect = 0.012
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135
G Y +E+A+ +Q AL L+P+ +A+ I + +G++ AI + AL + PD
Sbjct: 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521
>gnl|CDD|34394 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 43.0 bits (101), Expect = 9e-05
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 164 RAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN 223
A + K A YGRAL + G+Y+++++ I+ +P Y G L
Sbjct: 297 LAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANK 355
Query: 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKY---YKKALSVDSRYYR 277
A+E K A+ LDP N G A++ Y D +
Sbjct: 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWD 412
Score = 41.5 bits (97), Expect = 3e-04
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115
L +I A P +P + G + ++A+ + AL L+P N L++
Sbjct: 327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP-------NSPLLQLN 379
Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175
+ + A++I Y ++ D + A +A + A
Sbjct: 380 LAQALLKGGKPQEAIRILNRY---------LFNDPEDPNGWDLLA---QAYAELGNRAEA 427
Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLYSSISPD 209
RA Y + G E++I +A PD
Sbjct: 428 LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461
Score = 30.7 bits (69), Expect = 0.47
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY--YKVYANRALI 112
I L + P DP G+++ Y G+ +ALL L R ++ RA
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453
Query: 113 RYKMG 117
+ K+G
Sbjct: 454 QVKLG 458
>gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin
structure and dynamics].
Length = 700
Score = 43.0 bits (101), Expect = 1e-04
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 12/156 (7%)
Query: 60 AVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119
+++ P E ++G+ G E+A + L + + + + L++
Sbjct: 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91
Query: 120 PMAIRDYGTALKINPDYDVAYIGRGNIYRDERY-----SDLQKAFADFDRAIQLKTSDGR 174
AI+ Y ALKI D I RD D + ++ +QL+ S
Sbjct: 92 DEAIKCYRNALKIEKD-------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210
+W G A+ + GEY+ ++E + ++
Sbjct: 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180
Score = 33.4 bits (76), Expect = 0.078
Identities = 35/189 (18%), Positives = 74/189 (39%), Gaps = 11/189 (5%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
++K L + L P + + A + L +G A L+ + V +
Sbjct: 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202
G + R ++ +A + A++++ + + +L+ +YE +E +Q + L
Sbjct: 81 LGLLQRSDK--KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138
Query: 203 YSSISPDYYNGRGISYLATKNYDSA---LEDFKFAINLDPKKASFWFNGGMVYEMQ---- 255
S + G ++ Y A LE+F+ N P K + + ++Y+ Q
Sbjct: 139 RPSQR-ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197
Query: 256 -GSYANAVK 263
GS A++
Sbjct: 198 AGSLQKALE 206
Score = 31.8 bits (72), Expect = 0.21
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246
+Y+K ++ Q + + + +G++ + A E + + D K W
Sbjct: 21 KQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79
Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDS 273
G++ Y A+K Y+ AL ++
Sbjct: 80 VLGLLQRSDKKYDEAIKCYRNALKIEK 106
>gnl|CDD|33959 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 41.1 bits (96), Expect = 3e-04
Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 33/145 (22%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
L ++ +P D EG+++ G Y G ALL +++AL L N +G
Sbjct: 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPE---ILLG 195
Query: 118 DVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWY 177
AL Y KA A +A+ L ++ RA
Sbjct: 196 --------LAEAL----------------YYQAGQQMTAKARALLRQALALDPANIRALS 231
Query: 178 GRALVYQMRGEYEKSIEDFSQAISL 202
A +G+Y ++ + + L
Sbjct: 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256
Score = 27.2 bits (60), Expect = 5.7
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 47 PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNP 100
M + L + P++ ++ GD+ +A +Q LDL P
Sbjct: 206 QQMTAKA-RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258
>gnl|CDD|39841 KOG4642, KOG4642, KOG4642, Chaperone-dependent E3 ubiquitin protein
ligase (contains TPR repeats) [Posttranslational
modification, protein turnover, chaperones].
Length = 284
Score = 39.2 bits (91), Expect = 0.002
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242
+ Y+ +I+ +S+AI + + YY R + +L K+++ ED + A+ LDP
Sbjct: 20 CFIPKRYDDAIDCYSRAICI-NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV 78
Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALS 270
+ G Y A+K ++A S
Sbjct: 79 KAHYFLGQWLLQSKGYDEAIKVLQRAYS 106
Score = 30.0 bits (67), Expect = 0.78
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 79 YGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDV 138
+ ++ A+ + A+ +NP Y NRAL K+ D AL+++P+
Sbjct: 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79
Query: 139 AYIGRGNIYR-----DERYSDLQKAF 159
A+ G DE LQ+A+
Sbjct: 80 AHYFLGQWLLQSKGYDEAIKVLQRAY 105
Score = 28.1 bits (62), Expect = 2.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202
+ +RY D A + RAI + + + RAL + +E ED +A+ L
Sbjct: 17 GNKCFIPKRYDD---AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL 73
Query: 203 -YSSISPDYYNGRGISYLATKNYDSALEDFKFAINL 237
+ + Y+ G+ L +K YD A++ + A +L
Sbjct: 74 DPNLVKAHYFLGQW--LLQSKGYDEAIKVLQRAYSL 107
>gnl|CDD|144197 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 38.6 bits (91), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102
+ G Y G +++A+ ++ AL+LNP
Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34
Score = 38.6 bits (91), Expect = 0.002
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLY 203
+A Y Y G+Y+++IE + +A+ L
Sbjct: 2 KALYNLGNAYFKLGKYDEAIEYYEKALELN 31
Score = 38.6 bits (91), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 103 YKVYANRALIRYKMGDVPMAIRDYGTALKINPDY 136
K N +K+G AI Y AL++NP+
Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34
Score = 37.0 bits (87), Expect = 0.006
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
G +Y YD A+E ++ A+ L+P
Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPN 33
Score = 35.1 bits (82), Expect = 0.022
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275
A +N G Y G Y A++YY+KAL ++
Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34
Score = 27.8 bits (63), Expect = 3.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 139 AYIGRGNIYRDERYSDLQKAFADFDRAIQL 168
A GN Y +A +++A++L
Sbjct: 3 ALYNLGNAYFKLG--KYDEAIEYYEKALEL 30
>gnl|CDD|38270 KOG3060, KOG3060, KOG3060, Uncharacterized conserved protein
[Function unknown].
Length = 289
Score = 37.6 bits (87), Expect = 0.004
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 48 SMGRRVN-IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVY 106
+ G+ + I L + +D E ++ +Y GDFEKA + L + P +
Sbjct: 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF 191
Query: 107 ANRALIRYKMG---DVPMAIRDYGTALKINPDYDVAYIG 142
A + Y G ++ +A + Y ALK+NP A G
Sbjct: 192 QRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230
>gnl|CDD|37051 KOG1840, KOG1840, KOG1840, Kinesin light chain [Cytoskeleton].
Length = 508
Score = 37.6 bits (87), Expect = 0.004
Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 53/219 (24%)
Query: 76 GVVYGMNGDFEKALLDFQSAL-DLNPRYYKVYANRALIRYKMGDVPM-------AIRDYG 127
+Y + G EKA + AL L + A + + V A+ Y
Sbjct: 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYE 265
Query: 128 TALKI--------NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGR 179
AL I +P +Y + +A +RA+++ A +
Sbjct: 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQG--KFAEAEEYCERALEIYEKLLGASHPE 323
Query: 180 --------ALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDF 231
A + Q EYE++ + +A+ +Y G LA
Sbjct: 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYL-----DAPGEDNVNLA----------- 367
Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270
K NL +Y G Y A + YKKA+
Sbjct: 368 KIYANL-----------AELYLKMGKYKEAEELYKKAIQ 395
>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3.
Length = 168
Score = 36.9 bits (86), Expect = 0.006
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 210 YYNGRGISYLATKNYDSALEDFKFAINL--DPKKASF-WFNGGMVYEMQGSYANAVKYYK 266
YY G+S + Y AL+++ A+ L DP S+ +N G+++ G + A++YY
Sbjct: 38 YYRD-GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96
Query: 267 KALSVDSRYYRAKNGI 282
+AL + +A N +
Sbjct: 97 QALERNPFLPQALNNM 112
Score = 33.4 bits (77), Expect = 0.072
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
YN+ G+++ NG+ KAL + AL+ NP + N A+I + G
Sbjct: 76 YNI-GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120
Score = 30.4 bits (69), Expect = 0.58
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLYSSISPD--------YYNG-----RGISYLATK 222
Y L++ GE+ K++E + QA+ + +Y G +G S +A
Sbjct: 75 LYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134
Query: 223 NYDSALEDFKFAINLDP 239
+D A E +K AI L P
Sbjct: 135 WFDQAAEYWKQAIALAP 151
>gnl|CDD|39755 KOG4555, KOG4555, KOG4555, TPR repeat-containing protein [Function
unknown].
Length = 175
Score = 37.0 bits (85), Expect = 0.007
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL-NPRYY---KVYANRA 110
++ + P YN R + GD E+AL D AL+L + + + R
Sbjct: 63 LELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122
Query: 111 LIRYKMGDVPMAIRDYGTALKI 132
L+ +G+ A D+ A ++
Sbjct: 123 LLYRLLGNDDAARADFEAAAQL 144
Score = 35.5 bits (81), Expect = 0.021
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273
+ I+ + D ALE F A+ L P++AS + N +QG A+ KAL +
Sbjct: 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108
Query: 274 RYYRAK 279
R
Sbjct: 109 DQTRTA 114
Score = 33.1 bits (75), Expect = 0.083
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINL-DPK---KA 242
G+ + ++E F QA+ L YN R + + + AL+D A+ L +
Sbjct: 57 GDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115
Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYR 277
+ G++Y + G+ A ++ A + S++ R
Sbjct: 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150
Score = 27.0 bits (59), Expect = 6.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK 104
+ + RG++Y + G+ + A DF++A L ++ +
Sbjct: 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150
>gnl|CDD|36799 KOG1586, KOG1586, KOG1586, Protein required for fusion of vesicles
in vesicular transport, alpha-SNAP [Intracellular
trafficking, secretion, and vesicular transport].
Length = 288
Score = 36.1 bits (83), Expect = 0.011
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 130 LKINPDYDVA--YIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMR- 186
LK +D A Y+ N Y+ D ++A ++AI++ T GR + A + +
Sbjct: 65 LKAGSKHDAATTYVEAANCYKKV---DPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEI 119
Query: 187 GE-YEKSIEDFSQAISLYSSISPDYYNGRGISYLATK------NYDSALEDFKFAINLDP 239
E YE ++DF +AI+ Y + +YY G A K Y + LE + AI++
Sbjct: 120 AEIYESDLQDFEKAIAHYEQ-AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178
Query: 240 KKASF 244
+ A
Sbjct: 179 QVARS 183
>gnl|CDD|36344 KOG1129, KOG1129, KOG1129, TPR repeat-containing protein [General
function prediction only].
Length = 478
Score = 35.8 bits (82), Expect = 0.016
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 114 YKMGDVPM-AIRDYGTALKINPDYDVAYI-GRGNIYRDERYSDLQKAFADFDRAIQLKTS 171
Y+ D P A+ G L P +DV Y+ G+ I+ E + A + ++L
Sbjct: 266 YQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH--EAMEQQEDALQLYKLVLKLHPI 322
Query: 172 DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDF 231
+ A A+ Y E ++ + + + + + SP+ + G+ L + D L F
Sbjct: 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381
Query: 232 KFAINL---DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282
+ A++ + A W+N G V G + A + ++ AL+ D+++ A N +
Sbjct: 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435
Score = 32.0 bits (72), Expect = 0.20
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131
YN+ V + GDF A F+ AL + ++ + N A++ + GD+ A A
Sbjct: 399 YNLGFVAVTI-GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457
Query: 132 INPD 135
+ PD
Sbjct: 458 VMPD 461
Score = 31.6 bits (71), Expect = 0.24
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118
E N V+ +GD A +A + P +V N + G
Sbjct: 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVHYGL 478
Score = 29.3 bits (65), Expect = 1.3
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 201 SLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYAN 260
SL PD + Y + AL ++ P ++ ++E +
Sbjct: 249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308
Query: 261 AVKYYKKALSVDS 273
A++ YK L +
Sbjct: 309 ALQLYKLVLKLHP 321
>gnl|CDD|36389 KOG1174, KOG1174, KOG1174, Anaphase-promoting complex (APC),
subunit 7 [Cell cycle control, cell division, chromosome
partitioning, Posttranslational modification, protein
turnover, chaperones].
Length = 564
Score = 35.0 bits (80), Expect = 0.023
Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 5/214 (2%)
Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135
G NGD+ +A F S L NP + A++ + G
Sbjct: 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY 298
Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195
+ + DE+ ++A ++ I + + A + + + +++
Sbjct: 299 TASHWFVHAQLLYDEK--KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356
Query: 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA-SFWFNGGMV-YE 253
F A L + Y G SYLA K + A + I L A S G +V +
Sbjct: 357 FRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP 415
Query: 254 MQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287
A K+ +K+L ++ Y A N I + Q
Sbjct: 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449
Score = 35.0 bits (80), Expect = 0.026
Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 50/281 (17%)
Query: 32 VVSVILLIEG-CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALL 90
+ +V+L EG C M TA + V + FE+AL
Sbjct: 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTA---------SHWFVHAQLLYDEKKFERALN 321
Query: 91 DFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP-DYDV------AYIGR 143
+ +D PR ++ + + + A+ + TA + P ++ +Y+ +
Sbjct: 322 FVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381
Query: 144 G-----NIYRDERYSDLQ---KAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIE- 194
N + Q ++ F + R + + EKS++
Sbjct: 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE--------KAKKFAEKSLKI 433
Query: 195 --DFSQAISLYSSI-SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMV 251
++ A++L + + + I L + L F + + G +
Sbjct: 434 NPIYTPAVNLIAELCQVEGPTKDIIKLL-----EKHLIIF--------PDVNLHNHLGDI 480
Query: 252 YEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSST 292
Q A++YY KAL D + R G+ + + +
Sbjct: 481 MRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521
>gnl|CDD|39364 KOG4162, KOG4162, KOG4162, Predicted calmodulin-binding protein
[Signal transduction mechanisms].
Length = 799
Score = 35.0 bits (80), Expect = 0.028
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP------DYYNGRGISYLATKNYDSA 227
+Y R L+ +++G+ E++ E F A++L P + G LA K S
Sbjct: 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKR--SL 742
Query: 228 LEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
L D A+ LDP W+ G V++ G A + ++ AL ++
Sbjct: 743 LSD---ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784
>gnl|CDD|37214 KOG2003, KOG2003, KOG2003, TPR repeat-containing protein [General
function prediction only].
Length = 840
Score = 33.9 bits (77), Expect = 0.055
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 194 EDFSQAISLYS-SISPDYYN-----GRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247
+DF+ A +++ D YN +G A + D A E +K A+N D FN
Sbjct: 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529
Query: 248 GGMVYEMQGSYANAVKYYKK 267
G+ E G+ A+ + K
Sbjct: 530 IGLTAEALGNLDEALDCFLK 549
Score = 29.7 bits (66), Expect = 1.1
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 179 RALVYQMRGEYEKSIE--------DFSQAISLYSSISPDYYNGRGISYLATKNYDSALED 230
+A G+ E +IE D A + +++ + G + + Y
Sbjct: 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI--- 481
Query: 231 FKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273
A+N+D A+ N G + G A ++YK+AL+ D+
Sbjct: 482 ---ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521
Score = 29.3 bits (65), Expect = 1.5
Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 3/200 (1%)
Query: 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYG 127
+ +G + NGD +KA ++ AL+ + + N L +G++ A+ +
Sbjct: 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548
Query: 128 TALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRG 187
I + + NIY E D +A +A L +D A +Y G
Sbjct: 549 KLHAILLNNAEVLVQIANIY--ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG 606
Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247
+ ++ + + + + + Y+ T+ + A+ F+ A + P ++ +
Sbjct: 607 DKSQAFQCHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665
Query: 248 GGMVYEMQGSYANAVKYYKK 267
+ G+Y A YK
Sbjct: 666 IASCFRRSGNYQKAFDLYKD 685
Score = 26.2 bits (57), Expect = 9.7
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFD 163
K++ N +++ +G++ R++ A+K Y +A +I +D R L F
Sbjct: 231 KMFPNAGILKMNIGNIHFKKREFSKAIKF---YRMALDQVPSINKDMRIKILNNIGVTFI 287
Query: 164 RAIQLKTS------------DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYY 211
+A Q + + A + G+ EK E F + I + I D Y
Sbjct: 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347
>gnl|CDD|36524 KOG1310, KOG1310, KOG1310, WD40 repeat protein [General function
prediction only].
Length = 758
Score = 33.6 bits (76), Expect = 0.076
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRA---LIRYKMGDVPMAIRDYGTALKINPDYDV 138
A+ + A+ P + NRA + R GD +A+RD AL++NP
Sbjct: 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446
Query: 139 AY 140
A+
Sbjct: 447 AH 448
>gnl|CDD|39707 KOG4507, KOG4507, KOG4507, Uncharacterized conserved protein,
contains TPR repeats [Function unknown].
Length = 886
Score = 33.2 bits (75), Expect = 0.081
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 198 QAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
QA+++ SS P + G +YLA KN ALE F+ A+ L K
Sbjct: 667 QALAINSS-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708
>gnl|CDD|35763 KOG0543, KOG0543, KOG0543, FKBP-type peptidyl-prolyl cis-trans
isomerase [Posttranslational modification, protein
turnover, chaperones].
Length = 397
Score = 32.6 bits (74), Expect = 0.12
Identities = 44/246 (17%), Positives = 81/246 (32%), Gaps = 34/246 (13%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYA--NRALIRYKMGDVPMAI 123
P+ V +G F++ L F+ + V AL K+G+V +
Sbjct: 101 PNKGAVVKVHLEGELEDGVFDQRELRFEFGEGED---IDVIEGLEIALRMMKVGEVALVT 157
Query: 124 RD----YGTALK----INPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175
D YG I P+ + +Y E K + + +
Sbjct: 158 IDPKYAYGEEGGEPPLIPPNATL-------LYEVELLDFELKEDESWKMFAEERLEAADR 210
Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLY---SSISPDY-----------YNGRGISYLAT 221
R V G+++ + + + +A+S S + + YL
Sbjct: 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL 270
Query: 222 KNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNG 281
K Y A+E + LDP + G G Y A ++KAL ++ A+
Sbjct: 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330
Query: 282 ILRISQ 287
++++ Q
Sbjct: 331 LIKLKQ 336
Score = 29.2 bits (65), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNP 100
I+S V+ P++ + RG G+++ A DFQ AL L P
Sbjct: 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322
>gnl|CDD|35771 KOG0551, KOG0551, KOG0551, Hsp90 co-chaperone CNS1 (contains TPR
repeats) [Posttranslational modification, protein
turnover, chaperones].
Length = 390
Score = 31.9 bits (72), Expect = 0.23
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 106 YANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141
Y NRA + +G+ A+ D ALK+ P + AYI
Sbjct: 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157
Score = 30.4 bits (68), Expect = 0.72
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 188 EYEKSIEDFSQAISLYS---SISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244
Y+ ++E +++ + ++ Y R + L NY SAL D A+ L P
Sbjct: 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155
Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVD 272
+ G +A AV + ++ L +D
Sbjct: 156 YIRGAKCLLELERFAEAVNWCEEGLQID 183
>gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 31.5 bits (71), Expect = 0.31
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
+ ++A E + A+ L P+ A+ WF G E G + A Y++ L +D
Sbjct: 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59
>gnl|CDD|35765 KOG0545, KOG0545, KOG0545, Aryl-hydrocarbon receptor-interacting
protein [Posttranslational modification, protein
turnover, chaperones].
Length = 329
Score = 31.5 bits (71), Expect = 0.33
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKAS 243
EY + +E S+ + + Y+ R ++ A N A D + + LDP AS
Sbjct: 244 EEYYEVLEHCSEILRHHPGNVKAYFR-RAKAHAAVWNEAEAKADLQKVLELDPSLAS 299
>gnl|CDD|36345 KOG1130, KOG1130, KOG1130, Predicted G-alpha GTPase interaction
protein, contains GoLoco domain [Signal transduction
mechanisms].
Length = 639
Score = 30.4 bits (68), Expect = 0.60
Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 55/239 (23%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDV---- 138
GD + F++AL + + I ++G+ ++DY ALK + +D+
Sbjct: 31 GDCRAGVDFFKAALQVGTEDLSTLS---AIYSQLGNAYFYLKDYEKALKYH-THDLTLAR 86
Query: 139 ----------AYIGRGNIYR-----DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183
+ GN + DE + + DF R + + + RA Y VY
Sbjct: 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL-DFARELGDRVLESRALYNLGNVY 145
Query: 184 QMRGE--------------------YEKSIEDFSQAISLYSSISPDYYNGR-----GISY 218
+G+ E +++ + + + L + GR G +Y
Sbjct: 146 HAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY 205
Query: 219 LATKNYDSALEDFKFAINLDPK---KASF---WFNGGMVYEMQGSYANAVKYYKKALSV 271
++D A+ K + + + +A+ N G + G++ A+++YK L++
Sbjct: 206 YLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264
>gnl|CDD|39028 KOG3824, KOG3824, KOG3824, Huntingtin interacting protein HYPE
[General function prediction only].
Length = 472
Score = 28.9 bits (64), Expect = 1.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
G EKA+ F+ AL L P ++ R ++ A + Y AL I+P A +
Sbjct: 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189
Query: 143 R 143
R
Sbjct: 190 R 190
Score = 27.0 bits (59), Expect = 7.2
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
+ A+ F+ A+ L P G EM A + Y KAL++
Sbjct: 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180
>gnl|CDD|32736 COG2912, COG2912, Uncharacterized conserved protein [Function
unknown].
Length = 269
Score = 28.7 bits (64), Expect = 1.8
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLY 203
R + A +R + L D R L+Y G Y ++ED S +
Sbjct: 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245
Score = 26.4 bits (58), Expect = 9.6
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK---YYKKALSVDS 273
+ L ++ AL + ++L+P+ + G++Y G Y A++ Y+ + D
Sbjct: 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249
Query: 274 RYYRAKNGILRISQDL 289
+ +L + Q+
Sbjct: 250 IAEMIRAQLLELRQES 265
>gnl|CDD|113501 pfam04733, Coatomer_E, Coatomer epsilon subunit. This family
represents the epsilon subunit of the coatomer complex,
which is involved in the regulation of intracellular
protein trafficking between the endoplasmic reticulum
and the Golgi complex.
Length = 290
Score = 28.2 bits (63), Expect = 2.6
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
S P N + V G +E+A + ALD + + + N + +G
Sbjct: 198 DSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNR 257
Query: 126 YGTALKIN-PDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ 167
+ LK++ P + + DL + A+FDRA+Q
Sbjct: 258 NLSQLKLSHPTHPLV-------------KDLNEKEAEFDRAVQ 287
>gnl|CDD|39354 KOG4151, KOG4151, KOG4151, Myosin assembly protein/sexual cycle
protein and related proteins [Posttranslational
modification, protein turnover, chaperones, Cell cycle
control, cell division, chromosome partitioning, General
function prediction only].
Length = 748
Score = 28.0 bits (62), Expect = 3.0
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
G++ KA+ + + AL+ PR K RA + + +A+RD K++P
Sbjct: 107 GEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDP-------- 158
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQL 168
N+ E + +L+ D A
Sbjct: 159 -SNVSASEIFEELKGLLELKDLASDE 183
>gnl|CDD|34134 COG4455, ImpE, Protein of avirulence locus involved in
temperature-dependent protein secretion [General
function prediction only].
Length = 273
Score = 28.0 bits (62), Expect = 3.0
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK-VYANRALIR 113
I ++A P+D G + + + GD+EKAL A L+P+ R LIR
Sbjct: 21 IGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80
Query: 114 YKMGDVPMAIRDYGTALKINPDY 136
A R+ A P +
Sbjct: 81 ------CEAARNEVFAGGAVPGF 97
>gnl|CDD|33728 COG3947, COG3947, Response regulator containing CheY-like receiver
and SARP domains [Signal transduction mechanisms].
Length = 361
Score = 28.0 bits (62), Expect = 3.0
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 179 RALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGIS---YLATKNYDSALEDFKFAI 235
+ LV Q +G+Y D+ A + Y G YL + A++ + A+
Sbjct: 248 KELVGQYKGDYLPE-ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306
Query: 236 NLDPKKASFWFNGGMVYEMQGSYANAVKYYKK 267
LDP G +A+K+Y++
Sbjct: 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYER 338
>gnl|CDD|38823 KOG3617, KOG3617, KOG3617, WD40 and TPR repeat-containing protein
[General function prediction only].
Length = 1416
Score = 27.7 bits (61), Expect = 4.4
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 182 VYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK 241
+Y G+Y +S+ + A+S YSS + DY++ I + K +A I +
Sbjct: 914 LYSWWGQYLESVGEMDAALSFYSS-AKDYFSMVRIKCIQGKTDKAA------RIAEESGD 966
Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKA 268
+ ++ +YE G AVK++ +A
Sbjct: 967 KAACYHLARMYENDGDVVKAVKFFTRA 993
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 27.5 bits (61), Expect = 5.1
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 16/52 (30%)
Query: 115 KMGDVPMAIRDYGT----------------ALKINPDYDVAYIGRGNIYRDE 150
K+ +VP AI D T L DYDV RG IY DE
Sbjct: 119 KILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDE 170
>gnl|CDD|33953 COG4228, COG4228, Mu-like prophage DNA circulation protein [General
function prediction only].
Length = 451
Score = 27.3 bits (60), Expect = 5.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 150 ERYSDLQKAFAD----FDRAIQLKTSDGRAWYGRALVYQMR 186
E D+Q+A A+ + A+ +++ G RAL Q+R
Sbjct: 342 ESLDDVQRAAAEVGGLLENAVYTESAYGTTETLRALAGQLR 382
>gnl|CDD|37920 KOG2709, KOG2709, KOG2709, Uncharacterized conserved protein
[Function unknown].
Length = 560
Score = 27.0 bits (59), Expect = 6.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 240 KKASFWFNGGMVYEMQGSYANAVKYYKKAL 269
K A G+ Y+ + NA+ Y+K L
Sbjct: 20 KGAYASVEQGLCYDEVNDWENALAMYEKGL 49
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 26.9 bits (60), Expect = 6.9
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 41 GCSSLF--PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG--DFEKALLDFQSAL 96
GCS + ++ + ++L ++IRAH + GY +Y + F + F SA
Sbjct: 215 GCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYR----MYRKSQTTGFPSLITIF-SA- 268
Query: 97 DLNPRYYKVYANRALIRYKMGDVPMAIRDY 126
P Y VY N+A + +V M IR +
Sbjct: 269 ---PNYLDVYNNKAAVLKYENNV-MNIRQF 294
>gnl|CDD|111190 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 18kD
subunit. This family includes the Spt3 yeast
transcription factors and the 18kD subunit from human
transcription initiation factor IID (TFIID-18).
Determination of the crystal structure reveals an
atypical histone fold.
Length = 93
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 227 ALEDFKFAINLDPKK 241
+EDFKF I DPKK
Sbjct: 56 TVEDFKFLIRKDPKK 70
>gnl|CDD|38291 KOG3081, KOG3081, KOG3081, Vesicle coat complex COPI, epsilon
subunit [Intracellular trafficking, secretion, and
vesicular transport].
Length = 299
Score = 26.9 bits (59), Expect = 7.5
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
G +E+A + ALD + + + AN ++ +G + LK++ + ++
Sbjct: 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS-HPEHPFV- 278
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQ 167
L + A+FDR +
Sbjct: 279 ----------KHLNEKEAEFDRLVL 293
>gnl|CDD|33428 COG3629, DnrI, DNA-binding transcriptional activator of the SARP
family [Signal transduction mechanisms].
Length = 280
Score = 26.4 bits (58), Expect = 8.9
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268
+ +A D+ +E + I LDP + Y + G + A++ Y++
Sbjct: 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,695,628
Number of extensions: 198716
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 198
Length of query: 298
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,254,100
Effective search space: 872090500
Effective search space used: 872090500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)