RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62] (298 letters) >gnl|CDD|39826 KOG4626, KOG4626, KOG4626, O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism, Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms]. Length = 966 Score = 95.1 bits (236), Expect = 2e-20 Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 3/238 (1%) Query: 59 TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118 IR +P E Y+ + G + AL +++A++L P++ Y N A GD Sbjct: 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD 165 Query: 119 VPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYG 178 + +A++ + AL++NPD A GN+ + E L++A A + +AI+ + AW Sbjct: 166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAE--GRLEEAKACYLKAIETQPCFAIAWSN 223 Query: 179 RALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLD 238 V+ +GE +I+ + +A+ L + Y N G Y + +D A+ + A+NL Sbjct: 224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALNLR 282 Query: 239 PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 P A N +Y QG A+ YK+AL + + A N + +D S V Sbjct: 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAV 340 Score = 94.7 bits (235), Expect = 3e-20 Identities = 53/223 (23%), Positives = 108/223 (48%), Gaps = 3/223 (1%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125 P+ + Y G VY F++A+ + AL+L P + + N A I Y+ G + +AI Sbjct: 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185 Y AL++ P++ AY N +D+ + +A +++A++L + A +Y+ Sbjct: 309 YKRALELQPNFPDAYNNLANALKDK--GSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 Query: 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFW 245 +G+ E++ + +A+ ++ + +N Y N D A+ +K A+ + P A Sbjct: 367 QGKIEEATRLYLKALEVFPEFA-AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 Query: 246 FNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 N G Y+ G + A++ Y +A+ ++ + A + + I +D Sbjct: 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 Score = 71.2 bits (174), Expect = 3e-13 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 43/221 (19%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 ID+ + P+ P+ YN G +A+ + AL L P + N I Sbjct: 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174 + G + A R Y AL++ P++ A +++L Sbjct: 366 EQGKIEEATRLYLKALEVFPEFAAA------------HNNL------------------- 394 Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP---DYYNGRGISYLATKNYDSALEDF 231 A +Y+ +G + +I + +A+ I P D + G +Y + +A++ + Sbjct: 395 -----ASIYKQQGNLDDAIMCYKEAL----RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 AI ++P A N +Y+ G+ A++ Y+ AL + Sbjct: 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 Score = 66.2 bits (161), Expect = 1e-11 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 62 IRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 +R P+ + N G +Y G E+A + AL++ P + + N A I + G++ Sbjct: 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 Query: 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRAL 181 AI Y AL+I P + A GN Y++ D+ A + RAIQ+ + A A Sbjct: 407 AIMCYKEALRIKPTFADALSNMGNTYKEM--GDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 Query: 182 VYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212 +Y+ G ++I+ + A+ L PD+ + Sbjct: 465 IYKDSGNIPEAIQSYRTALKL----KPDFPD 491 Score = 62.4 bits (151), Expect = 2e-10 Identities = 26/83 (31%), Positives = 43/83 (51%) Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 +R P+ + + G Y GD A+ + A+ +NP + + ++N A I G++P Sbjct: 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 Query: 121 MAIRDYGTALKINPDYDVAYIGR 143 AI+ Y TALK+ PD+ AY Sbjct: 474 EAIQSYRTALKLKPDFPDAYCNL 496 Score = 30.8 bits (69), Expect = 0.46 Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL 111 I T I+ +P+ E ++ +Y +G+ +A+ +++AL L P + Y N Sbjct: 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 >gnl|CDD|35767 KOG0547, KOG0547, KOG0547, Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]. Length = 606 Score = 77.8 bits (191), Expect = 3e-15 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 10/219 (4%) Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 A I+ P+ Y R Y EK DF A DL+P VY +R +R+ + Sbjct: 349 FDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 Query: 118 DVPMAIRDYGTALKINPDYDVAYIGRG-NIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176 AI D+ A+ ++P+ AYI +YR + ++ K F + + + Sbjct: 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNL 467 Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN-----GRGISYLA-TKNYDSALED 230 + L Q +++K+++ + +AI L N + + L ++ + A Sbjct: 468 FAEILTDQ--QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENL 525 Query: 231 FKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKAL 269 + AI LDPK + +G A++ ++K+ Sbjct: 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 Score = 72.0 bits (176), Expect = 2e-13 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 10/220 (4%) Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 E +RG + + GD A DF +A+ L+P + +Y RA +D+ A Sbjct: 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKA 386 Query: 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEY 189 ++P+ Y RG + ++A ADF +AI L + A+ + + Sbjct: 387 EDLDPENPDVYYHRGQMRF--LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI 444 Query: 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249 +S++ F +A + + P+ YN + +D A++ + AI L+P++ N Sbjct: 445 AESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 Query: 250 -------MVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282 +V + + A +KA+ +D + +A + Sbjct: 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 Score = 64.3 bits (156), Expect = 4e-11 Identities = 58/292 (19%), Positives = 90/292 (30%), Gaps = 55/292 (18%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 I T I P +P Y+ R Y GD+EK + D AL+LNP Y K RA Sbjct: 135 IKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYI---------------------GRG--------- 144 ++G A+ D T L I + A I Sbjct: 195 QLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 Query: 145 -NIYRDERYSDLQKAFAD-FDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202 Y ++D + F + D++ A + Y K+ + ++ Sbjct: 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG-----LEEGYLKAYDKATEECLG 308 Query: 203 YSSISPDYYNG-------------RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249 S S RG + + A EDF AI LDP S + Sbjct: 309 SES-SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367 Query: 250 MVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRISQDLSSTVNEVNE 298 Y + K + KA +D Y + + + Q + + + Sbjct: 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 Score = 47.3 bits (112), Expect = 5e-06 Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 +G + K YD A++ + AI L P + F+ N YE G + ++ KAL Sbjct: 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177 Query: 271 VDSRYYRA 278 ++ Y +A Sbjct: 178 LNPDYVKA 185 Score = 40.4 bits (94), Expect = 6e-04 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131 +G + N +++A+ + A++L P Y+NRA +GD I D AL+ Sbjct: 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177 Query: 132 INPDYDVAYIGRGNIYRDERYSDLQKAFAD 161 +NPDY A + R + + E+ +A D Sbjct: 178 LNPDYVKALLRRASAH--EQLGKFDEALFD 205 Score = 38.5 bits (89), Expect = 0.002 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%) Query: 163 DRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATK 222 A LKT G ++ +Y+++I+ ++QAI L P +Y+ R Y + Sbjct: 113 KYAAALKT-KGNKFFRN-------KKYDEAIKYYTQAIEL-CPDEPIFYSNRAACYESLG 163 Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAV 262 +++ +ED A+ L+P +E G + A+ Sbjct: 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 >gnl|CDD|29151 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here. Length = 100 Score = 74.3 bits (182), Expect = 4e-14 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFA 234 A +Y G+Y++++E + +A+ L + D Y +Y Y+ ALED++ A Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKA 60 Query: 235 INLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 + LDP A ++N G+ Y G Y A++ Y+KAL +D Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 Score = 69.0 bits (168), Expect = 1e-12 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 E G +Y GD+++AL ++ AL+L+P Y N A YK+G A+ DY A Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 Query: 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169 L+++PD AY G Y + ++A +++A++L Sbjct: 61 LELDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKALELD 98 Score = 68.6 bits (167), Expect = 2e-12 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 3/102 (2%) Query: 139 AYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQ 198 A + GN+Y D +A +++A++L + A+Y A Y G+YE+++ED+ + Sbjct: 2 ALLNLGNLYYKLG--DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59 Query: 199 AISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 A+ L + Y G++Y Y+ ALE ++ A+ LDP Sbjct: 60 ALELDPD-NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 Score = 62.4 bits (151), Expect = 1e-10 Identities = 24/81 (29%), Positives = 41/81 (50%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 ++ + P + + Y Y G +E+AL D++ AL+L+P K Y N L Y Sbjct: 20 LEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 Query: 115 KMGDVPMAIRDYGTALKINPD 135 K+G A+ Y AL+++P+ Sbjct: 80 KLGKYEEALEAYEKALELDPN 100 Score = 55.5 bits (133), Expect = 2e-08 Identities = 24/79 (30%), Positives = 36/79 (45%) Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 G Y +YD ALE ++ A+ LDP A ++N Y G Y A++ Y+KAL Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 Query: 271 VDSRYYRAKNGILRISQDL 289 +D +A + L Sbjct: 63 LDPDNAKAYYNLGLAYYKL 81 >gnl|CDD|36341 KOG1126, KOG1126, KOG1126, DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]. Length = 638 Score = 63.9 bits (155), Expect = 5e-11 Identities = 44/210 (20%), Positives = 95/210 (45%), Gaps = 5/210 (2%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125 P+ PE + G + + D + A+ F+ A+ L+PR+ Y + A++ Sbjct: 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185 + AL ++P + A+ G G +Y + L+ A F +A+++ S+ + Sbjct: 478 FRKALGVDPRHYNAWYGLGTVYL--KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 Query: 186 RGEYEKSIEDFSQAISL-YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244 +K+++ + +AI L + Y+ R + Y AL++ + L P+++S Sbjct: 536 LKRKDKALQLYEKAIHLDPKNPLCKYH--RASILFSLGRYVEALQELEELKELVPQESSV 593 Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 + G +Y+ G+ A+ ++ AL +D + Sbjct: 594 FALLGKIYKRLGNTDLALLHFSWALDLDPK 623 Score = 62.7 bits (152), Expect = 1e-10 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 3/177 (1%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125 P Y + G +F+KA+ F+ AL ++PR+Y + + K + A Sbjct: 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 Query: 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185 + A++INP V G I + D KA +++AI L + Y RA + Sbjct: 512 FQKAVEINPSNSVILCHIGRIQHQLKRKD--KALQLYEKAIHLDPKNPLCKYHRASILFS 569 Query: 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242 G Y +++++ + L S + G Y N D AL F +A++LDPK A Sbjct: 570 LGRYVEALQELEELKELVPQESSVFA-LLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 Score = 51.5 bits (123), Expect = 3e-07 Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 17/211 (8%) Query: 86 EKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP----DYDVAYI 141 +AL F+ + V + +++ + A R + +I P ++ Sbjct: 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395 Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 ++ + S L + D D + +W + ++ +++ +I+ F +AI Sbjct: 396 TLWHLQDEVALSYLAQDLIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ 449 Query: 202 LYSSISPDY---YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258 L P + Y G +AT+ +D A++ F+ A+ +DP+ + W+ G VY Q Sbjct: 450 L----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 Query: 259 ANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 A +++KA+ ++ I RI L Sbjct: 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 >gnl|CDD|36342 KOG1127, KOG1127, KOG1127, TPR repeat-containing protein [RNA processing and modification]. Length = 1238 Score = 63.5 bits (154), Expect = 7e-11 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 13/182 (7%) Query: 114 YKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG 173 + +A+ AL+++ A+ G IYRD D+++A FD+A +L +D Sbjct: 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRD--SDDMKRAKKCFDKAFELDATDA 526 Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLYSS-ISPDY-----YNGRGISYLATKNYDSA 227 A A Y E+S + + I L ++ +P + + RG YL N A Sbjct: 527 EAAAASADTYA-----EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA 581 Query: 228 LEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 + +F+ A+ DPK + W G Y G Y++A+K + KA + + + Sbjct: 582 VCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 Query: 288 DL 289 D Sbjct: 642 DN 643 Score = 38.5 bits (89), Expect = 0.002 Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 49/252 (19%) Query: 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL 111 + P+ + GV+ N DFE A F S L+P + AL Sbjct: 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 Query: 112 IRYKMGDV--PMAIRDYGTALKIN----PDYDVAY------IGRGNIYRD-ERYSDLQKA 158 I +G + + + + L + + GNI + A Sbjct: 893 IPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 Query: 159 FADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL---------YSSISPD 209 A+ + EY ++E ++ I L Y+ PD Sbjct: 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 Query: 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYE----------MQGSYA 259 G L+ ++SA K + W V E + + Sbjct: 1013 A----GRLELSLGEFESA-------------KKASWKEWMEVDEDIRGTDLTLFFKNDFF 1055 Query: 260 NAVKYYKKALSV 271 ++++++++ALS+ Sbjct: 1056 SSLEFFEQALSI 1067 Score = 35.8 bits (82), Expect = 0.014 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 2/107 (1%) Query: 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249 +I +A+SL ++ +N G+ N A F + +P W N G Sbjct: 800 CTAIRCCKKAVSLCANNE-GLWNALGVLS-GIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 Query: 250 MVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 ++ + +A + S+D G I + + + + Sbjct: 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERL 904 Score = 34.2 bits (78), Expect = 0.040 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 32/197 (16%) Query: 78 VYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137 V G+ A F + P + + N ++ + D A + + ++P Sbjct: 825 VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 Query: 138 VAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA-----WYGRALVYQMRGEYEKS 192 V ++G I E + + F + +L + +G+A W ++ G E+S Sbjct: 885 VQWLGEALI--PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 Query: 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252 I + S S++ YY F +A N G Sbjct: 943 INTARKISSA--SLALSYYFLGHPQL-----------CFAYAAN------------GSTL 977 Query: 253 EMQGSYANAVKYYKKAL 269 E Y A++ + + Sbjct: 978 EHLEEYRAALELATRLI 994 Score = 31.2 bits (70), Expect = 0.33 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 38/131 (29%) Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134 RG Y + A+ +FQSAL +P+ Y Sbjct: 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYN------------------------------ 597 Query: 135 DYDVAYIGRGNIY-RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSI 193 ++G G Y RYS K F +A L+ + A++ G+Y++++ Sbjct: 598 ----LWLGLGEAYPESGRYSHALKV---FTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 Query: 194 EDFSQAISLYS 204 + I +S Sbjct: 651 DALGLIIYAFS 661 Score = 30.8 bits (69), Expect = 0.50 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 219 LATKNYDSALEDFKFAINLDPKKASFWFNGGMVY-EMQGSYANAVKYYKKALSVD 272 L K Y+ ALE K + DP + G+ + A ++Y A +D Sbjct: 13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLD 67 Score = 30.0 bits (67), Expect = 0.79 Identities = 54/274 (19%), Positives = 79/274 (28%), Gaps = 61/274 (22%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 + + +R P D + G Y +G + AL F A L P A++ Sbjct: 582 VCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY----RDERYSDLQKAFADFDR------ 164 G A+ G + G +D + QK DF Sbjct: 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 Query: 165 ---AIQLKTSDGRAW---------------------YGRALVYQMRGE------------ 188 I SD W Y L Q+ Sbjct: 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLG 761 Query: 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLAT--------KNYDSALEDFKFAINLDPK 240 YE I S AI +Y +YN GI+YL K+ +A+ K A++L Sbjct: 762 YECGIAHLSLAIHMYP-----WYN-LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815 Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 W N V G+ A A + K+ + Sbjct: 816 NEGLW-NALGVLSGIGNVACAQHCFIKSRFSEPT 848 Score = 28.5 bits (63), Expect = 2.3 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 82 NGDFEKALLDFQSALDLNPRYY--KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVA 139 N ++E+AL + L +P Y +V+ AL D+ A Y A K++PD +A Sbjct: 15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG-QDLEKAAEHYVLAAKLDPDNLLA 73 Query: 140 YIGRGNIYRDERY-SDLQKAFADFDRAIQLKTSD 172 + G GN+Y DL +A + RA+ + + Sbjct: 74 WKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 Score = 27.7 bits (61), Expect = 3.9 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGR---GISYLATK-NYDSALEDFKFAINLDPKKAS 243 EYE+++E + + PD YN + G++ + + + A E + A LDP Sbjct: 17 EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLL 72 Query: 244 FWFNGGMVYE 253 W G +YE Sbjct: 73 AWKGLGNLYE 82 >gnl|CDD|32877 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 250 Score = 60.0 bits (145), Expect = 8e-10 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 154 DLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNG 213 D +A + ++A++ S A RA YQ GE + + E + +A+SL + + D N Sbjct: 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108 Query: 214 RGISYLATKNYDSALEDFKFAINLD--PKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 G A + A++ F+ A+ + + N G+ G + A +Y K+AL + Sbjct: 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 Query: 272 D 272 D Sbjct: 169 D 169 Score = 49.2 bits (117), Expect = 1e-06 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 39/195 (20%) Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134 + Y GD+ +A + + AL+ +P YY + RA K+G+ +A Y AL + P Sbjct: 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100 Query: 135 DYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIE 194 + G++ + YG L Q G E++++ Sbjct: 101 N-------NGDVLNN---------------------------YGAFLCAQ--GRPEEAMQ 124 Query: 195 DFSQAIS--LYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252 F +A++ Y S N G+ L +D A E K A+ LDP+ ++ Sbjct: 125 QFERALADPAYGEPSDTLEN-LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 Query: 253 EMQGSYANAVKYYKK 267 G YA A Y ++ Sbjct: 184 YKAGDYAPARLYLER 198 Score = 38.8 bits (90), Expect = 0.002 Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 + YL +Y A ++ + A+ DP Y+ G A + Y+KALS+ Sbjct: 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA 99 Query: 273 SR 274 Sbjct: 100 PN 101 Score = 31.1 bits (70), Expect = 0.41 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 2/135 (1%) Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 +L + PS + VR Y G+ + A ++ AL L P V N Sbjct: 56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNI-YRDERYSDLQKAFADFDRAIQLKTSDGR 174 G A++ + AL +P Y N+ + +A RA++L Sbjct: 116 QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 Query: 175 AWYGRALVYQMRGEY 189 A A ++ G+Y Sbjct: 175 ALLELARLHYKAGDY 189 Score = 27.2 bits (60), Expect = 5.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 249 GMVYEMQGSYANAVKYYKKALSVDSRYYRA 278 + Y QG YA A K +KAL D YY A Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLA 71 >gnl|CDD|35843 KOG0624, KOG0624, KOG0624, dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]. Length = 504 Score = 58.1 bits (140), Expect = 3e-09 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 18/224 (8%) Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAI 123 A P+D E + G G AL + +A++ +P Y+ RA + MG A+ Sbjct: 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAAL 92 Query: 124 RDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG---RAWYGRA 180 +D L++ PD+ A I RG + + +L++A ADFD+ +Q + S+G A A Sbjct: 93 QDLSRVLELKPDFMAARIQRGVVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150 Query: 181 LVYQMR------------GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSAL 228 L+ + G+ + +IE + + + R Y+A A+ Sbjct: 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAI 209 Query: 229 EDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 D K A L + + G N++K ++ L +D Sbjct: 210 HDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 Score = 48.5 bits (115), Expect = 2e-06 Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 27/233 (11%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 I+ +T ++ P D R Y G+ +KA+ D + A L+ + + + + Y Sbjct: 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174 +GD ++++ LK++PD+ + + Y L+K + A Q Sbjct: 235 TVGDAENSLKEIRECLKLDPDHKLCF---------PFYKKLKKVVKSLESAEQAIEE--- 282 Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGIS---YLATKNYDSALEDF 231 + + +E + + + YNG + Y + + A++ Sbjct: 283 ------------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILR 284 K +++DP + Y Y +A+ Y+KAL ++ RA+ G+ R Sbjct: 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 >gnl|CDD|35773 KOG0553, KOG0553, KOG0553, TPR repeat-containing protein [General function prediction only]. Length = 304 Score = 58.1 bits (140), Expect = 3e-09 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 +Y+++++ +++AI L + + YY R +Y Y+ A++D + A+++DP + + Sbjct: 95 KDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 G+ Y G Y A++ YKKAL +D K+ + Q L Sbjct: 154 RLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 Score = 49.3 bits (117), Expect = 1e-06 Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 G + K+Y A++ + AI LDP A ++ N Y G Y +AVK + ALS+D Sbjct: 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 Query: 275 YYRA 278 Y +A Sbjct: 148 YSKA 151 Score = 47.3 bits (112), Expect = 4e-06 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212 D Q+A + AI+L ++ + RA Y GEYE +++D A+S+ S Y Sbjct: 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY-- 152 Query: 213 GR-GISYLATKNYDSALEDFKFAINLDPKKASFWFN 247 GR G++YLA Y+ A+E +K A+ LDP S+ N Sbjct: 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN 188 Score = 47.3 bits (112), Expect = 4e-06 Identities = 27/85 (31%), Positives = 41/85 (48%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 +D T I P++ Y R Y G++E A+ D +SAL ++P Y K Y L Sbjct: 101 VDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 Query: 115 KMGDVPMAIRDYGTALKINPDYDVA 139 +G AI Y AL+++PD + Sbjct: 161 ALGKYEEAIEAYKKALELDPDNESY 185 Score = 45.4 bits (107), Expect = 2e-05 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141 N D+++A+ + A++L+P Y NRA K+G+ A++D +AL I+P Y AY Sbjct: 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188 G Y ++A + +A++L + + Q E Sbjct: 154 RLGLAYLAL--GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 >gnl|CDD|36340 KOG1125, KOG1125, KOG1125, TPR repeat-containing protein [General function prediction only]. Length = 579 Score = 57.0 bits (137), Expect = 6e-09 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 16/215 (7%) Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135 G NGD +A L F++A+ +P++ + + + + + + AI L+++P Sbjct: 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT 351 Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 A + Y +E +A D+ I+ K + + E KS D Sbjct: 352 NLEALMALAVSYTNEGLQ--NQALKMLDKWIRNKPKYV---HLVSAGENEDFENTKSFLD 406 Query: 196 FSQ-----------AISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244 S A L + I PD +G G+ Y + +D A++ F+ A+ + P Sbjct: 407 SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466 Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK 279 W G A+ Y +AL + Y R + Sbjct: 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR 501 Score = 56.2 bits (135), Expect = 9e-09 Identities = 45/235 (19%), Positives = 93/235 (39%), Gaps = 16/235 (6%) Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 A ++ P E + G+ N + + A+ + L+L+P + A+ G Sbjct: 308 FEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 Query: 118 DVPMAIRDYGTALKINPDY--------DVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169 A++ ++ P Y + + + + +Q+ F + A QL Sbjct: 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF--LEAARQLP 425 Query: 170 TS-DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY--YNGRGISYLATKNYDS 226 T D G ++Y + GE++++++ F A+ + + DY +N G + + Sbjct: 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEE 482 Query: 227 ALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNG 281 A+ + A+ L P +N G+ G+Y AVK+ +ALS+ + Sbjct: 483 AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKA 537 Score = 51.6 bits (123), Expect = 3e-07 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 52/203 (25%) Query: 2 YLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAV 61 L WI +K L S+ S L S + L A Sbjct: 375 MLDKWIRNKPKYVHLVSAGENE-------------DFENTKSFLDSSHLAHIQELFLEAA 421 Query: 62 IRAHPS--DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 R P+ DP+ + GV+Y ++G+F++A+ F++AL + P Y ++ NR Sbjct: 422 -RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLW-NR---------- 469 Query: 120 PMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGR 179 G L N R E +A + ++RA+QL+ R Y Sbjct: 470 ------LGATL-------------ANGNRSE------EAISAYNRALQLQPGYVRVRYNL 504 Query: 180 ALVYQMRGEYEKSIEDFSQAISL 202 + G Y+++++ +A+S+ Sbjct: 505 GISCMNLGAYKEAVKHLLEALSM 527 >gnl|CDD|39847 KOG4648, KOG4648, KOG4648, Uncharacterized conserved protein, contains LRR repeats [Function unknown]. Length = 536 Score = 56.7 bits (136), Expect = 8e-09 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 3/185 (1%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 ID + I +P +P + R + Y F +A D ++A+ L+ Y K Y+ R R Sbjct: 117 IDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174 +G+ A +D T L + P I K+ F A Q Sbjct: 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQ-GMIQIL 235 Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFA 234 + + + D + + + N + + + Sbjct: 236 PIKKPGYKFSKKAMRSVPVVDVVSPRA--TIDDSNQLRISDEDIDKIFNSNCGIIEEVKK 293 Query: 235 INLDP 239 N P Sbjct: 294 TNPKP 298 Score = 49.4 bits (117), Expect = 1e-06 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212 S ++K D Q R Y +G+YE++I+ +S AI++Y +P Y+ Sbjct: 77 SPIEKQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHI 135 Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 R ++YL K++ A ED + AI LD + E G+ A K + L+++ Sbjct: 136 NRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 Query: 273 SRYYRAKNGILRISQDLSS 291 + K + ++S Sbjct: 196 PKNIELK----KSLARINS 210 Score = 46.3 bits (109), Expect = 1e-05 Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 7/209 (3%) Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134 RG Y G +E+A+ + +A+ + P + NRAL K A D A+ ++ Sbjct: 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 Query: 135 DYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL--KTSDGRAWYGRALVYQMRGEYEKS 192 Y AY R E + +A D + + L K + + R + R KS Sbjct: 163 LYVKAYSRRMQA--RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKS 220 Query: 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY 252 F+ A I P G + + D + Sbjct: 221 TPGFTPARQGMIQILPI--KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDI 277 Query: 253 EMQGSYANAVKYYKKALSVDSRYYRAKNG 281 + + + K + +G Sbjct: 278 DKIFNSNCGIIEEVKKTNPKPTPMPDTSG 306 >gnl|CDD|35768 KOG0548, KOG0548, KOG0548, Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]. Length = 539 Score = 54.2 bits (130), Expect = 4e-08 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 GD+ +A+ + A+ +P ++Y+NRA K+G+ P A++D ++++P++ AY+ Sbjct: 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA--WYGRALVYQMRGE-----YEKSIED 195 +G R + + KA + A++L S+ A Y R + Q E +++ D Sbjct: 432 KGAALRAMK--EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMAD 489 Score = 53.5 bits (128), Expect = 6e-08 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 1/146 (0%) Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210 + + +KA + +R + + +G+Y ++++ +++AI Sbjct: 336 KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARL 394 Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 Y+ R YL Y AL+D K I LDP + G Y A++ Y++AL Sbjct: 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 Query: 271 VDSRYYRAKNGILRISQDLSSTVNEV 296 +D A +G R + Sbjct: 455 LDPSNAEAIDGYRRCVEAQRGDETPE 480 Score = 43.8 bits (103), Expect = 5e-05 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 GDFE A+ F A+ L+P + +Y+NR+ +G A++D ++NPD+ Y Sbjct: 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR 75 Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188 +G D ++A + ++ S+ + G A Y Sbjct: 76 KGAALFGL--GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA 119 Score = 43.8 bits (103), Expect = 6e-05 Identities = 21/81 (25%), Positives = 38/81 (46%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 + T I+ P D Y+ R Y G++ +AL D + ++L+P + K Y + Sbjct: 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 Query: 115 KMGDVPMAIRDYGTALKINPD 135 M + A+ Y AL+++P Sbjct: 438 AMKEYDKALEAYQEALELDPS 458 Score = 43.4 bits (102), Expect = 7e-05 Identities = 28/100 (28%), Positives = 42/100 (42%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 I T I P++ Y+ R Y G +EKAL D LNP + K Y+ + + Sbjct: 22 IRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 Query: 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSD 154 +GD AI Y L+ +P G Y ++ +D Sbjct: 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAAD 121 Score = 42.7 bits (100), Expect = 1e-04 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 G++E +I F++AI L S + Y+ R +Y + +Y+ AL+D L+P A + Sbjct: 16 GDFETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYS 74 Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVN 294 G G Y A+ Y + L D + K G+ + + + Sbjct: 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQ 122 Score = 38.4 bits (89), Expect = 0.002 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176 GD AIR + A+ ++P V Y R Y +KA D + +L + + Sbjct: 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGY 73 Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAIN 236 + G+YE++I +S+ + S + G +YL D F Sbjct: 74 SRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEK 132 Query: 237 L--DPKKASF 244 L P Sbjct: 133 LANLPLTNYS 142 Score = 29.6 bits (66), Expect = 1.1 Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 +G + ++ ++++A+ F AI L P + N Y GSY A+K K Sbjct: 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT 62 >gnl|CDD|36370 KOG1155, KOG1155, KOG1155, Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning, Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 52.7 bits (126), Expect = 1e-07 Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGT 128 PE + Y + + EKA++ F+ AL LNP+Y + +M + AI Y Sbjct: 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 Query: 129 ALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188 A+ INP D RAWYG Y++ Sbjct: 390 AVDINP------------------------------------RDYRAWYGLGQAYEIMKM 413 Query: 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNG 248 + ++ F +A+ L + + G Y + A++ +K AI L + S Sbjct: 414 HFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 Query: 249 GMVYEMQGSYANAVKYYKKALSV 271 +YE A +YY+K + V Sbjct: 473 AKLYEELKDLNEAAQYYEKYVEV 495 Score = 51.1 bits (122), Expect = 4e-07 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 10/102 (9%) Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNG---RGISYLATKNYDSALEDFKFAINLDP 239 Y +R E+EK++ F +A+ L +P Y + G Y+ KN +A+E ++ A++++P Sbjct: 340 YSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 Query: 240 KKASFWFNGGMVYEMQGSYANAVKYYKKALSV---DSRYYRA 278 + W+ G YE+ + A+ Y++KAL + DSR + A Sbjct: 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 Score = 36.5 bits (84), Expect = 0.008 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 218 YLATKNYDSALEDFKFAINLDPKKASFWFNGGMVY-EMQGSYANAVKYYKKALSVDSRYY 276 Y ++ A+ FK A+ L+PK S W G Y EM+ ++A A++ Y++A+ ++ R Y Sbjct: 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA-AIESYRRAVDINPRDY 398 Query: 277 RAKNGI 282 RA G+ Sbjct: 399 RAWYGL 404 >gnl|CDD|36343 KOG1128, KOG1128, KOG1128, Uncharacterized conserved protein, contains TPR repeats [General function prediction only]. Length = 777 Score = 51.9 bits (124), Expect = 2e-07 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 11/159 (6%) Query: 133 NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL-KTSDGRAWYGRALVYQMRGEYEK 191 Y G++ D +++A +L RA AL+ ++ + Sbjct: 453 KDPDPRLYCLLGDVLHDPSL---------YEKAWELSNYISARAQRSLALLILSNKDFSE 503 Query: 192 SIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMV 251 + + +++ + + + G G + L + +A++ F + L+P A W N Sbjct: 504 ADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 Query: 252 YEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLS 290 Y A + K+AL + ++++ + +S D+ Sbjct: 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 Score = 45.8 bits (108), Expect = 1e-05 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 16/129 (12%) Query: 81 MNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD----- 135 N DF +A + +L++NP + ++ A++ + + + PD Sbjct: 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW 556 Query: 136 --YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSI 193 AYI R ++AF A++ + W LV GE+E +I Sbjct: 557 NNLSTAYI---------RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 Query: 194 EDFSQAISL 202 + + + + L Sbjct: 608 KAYHRLLDL 616 Score = 38.8 bits (90), Expect = 0.002 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 7/120 (5%) Query: 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN 212 + +R K D R + V YEK+ E +S Y S Sbjct: 437 LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWE-----LSNYISARAQRSL 491 Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 L+ K++ A + + ++ ++P + WF G AVK + + ++++ Sbjct: 492 AL--LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 Score = 36.5 bits (84), Expect = 0.009 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 12/138 (8%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR--YKMGDVPMAI 123 DP Y + G V +EKA Y A R+L D A Sbjct: 454 DPDPRLYCLLGDVLHDPSLYEKAWELS--------NYISARAQRSLALLILSNKDFSEAD 505 Query: 124 RDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183 + +L+INP + G G Q A F R + L+ + AW + Y Sbjct: 506 KHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 Query: 184 QMRGEYEKSIEDFSQAIS 201 + +++ +A+ Sbjct: 564 IRLKKKKRAFRKLKEALK 581 Score = 33.1 bits (75), Expect = 0.089 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 9/112 (8%) Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 L + +P + G + A+ F + L P + + N + + Sbjct: 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ 167 + A R ALK N + E Y + +F+ AI+ Sbjct: 566 LKKKKRAFRKLKEALKCN---------YQHWQIWENYMLVSVDVGEFEDAIK 608 >gnl|CDD|36522 KOG1308, KOG1308, KOG1308, Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms]. Length = 377 Score = 49.7 bits (118), Expect = 9e-07 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141 +G+F+ A+ F SA++LNP +YA RA + K+ AIRD A++INPD Y Sbjct: 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQL 168 RG R + ++A D A +L Sbjct: 187 FRGYAERLL--GNWEEAAHDLALACKL 211 Score = 38.1 bits (88), Expect = 0.003 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 GE++ +IE F+ AI L + Y R +L K ++A+ D FAI ++P A + Sbjct: 128 GEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 Query: 247 NGGMVYEMQGSYANAVKYYKKALSVD 272 G + G++ A A +D Sbjct: 187 FRGYAERLLGNWEEAAHDLALACKLD 212 >gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]. Length = 1018 Score = 49.6 bits (118), Expect = 1e-06 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 22/238 (9%) Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM--GDVPMAIRDYG 127 E + G Y GDFEKA + +L + + V L + + GD+ + + Sbjct: 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLPLVGLGQMYIKRGDLEESKFCFE 366 Query: 128 TALKINPD-YDVAYIGRGNIY--RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQ 184 LK P+ Y+ I G +Y ++ KA + ++ D AW A + + Sbjct: 367 KVLKQLPNNYETMKI-LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 Query: 185 MRGEYEKSIEDFSQAISLY----SSISPDYYNGRGISYLATKNYDSALEDFKFAI----- 235 + S++ + A+ + I P+ N + N + ALE FK A+ Sbjct: 426 QTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 Query: 236 --NLDPKKA---SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 N D K+ + +N + E A + YK L Y A + +++D Sbjct: 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 Score = 46.5 bits (110), Expect = 8e-06 Identities = 54/264 (20%), Positives = 92/264 (34%), Gaps = 59/264 (22%) Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL-----DLNPRYYKVYA-----NRALIR 113 PE N ++ G+ EKAL F+SAL N K N A + Sbjct: 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 Query: 114 YKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG 173 ++ D +A Y + LK +P Y AY+ G + RD+ ++L +A A+ + +S+ Sbjct: 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK--NNLYEASLLLKDALNIDSSNP 564 Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAIS-------LYSSIS------PDYYNGRGISYLA 220 A ++ + E++ + + F + YS I+ +N Sbjct: 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 Query: 221 TKNYDSALEDFKFAINLDPKK----------------------------------ASFWF 246 K+ + AL+ + + DPK W Sbjct: 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 Query: 247 NGGMVYEMQGSYANAVKYYKKALS 270 N Y QG Y A++ Y+ L Sbjct: 685 NLAHCYVEQGQYRLAIQMYENCLK 708 Score = 42.7 bits (100), Expect = 1e-04 Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 10/243 (4%) Query: 35 VILLIEGCSSLFPSMGRRVNIDS-LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQ 93 LL++ L + D+ V++ P + + + D+ AL ++ Sbjct: 129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK 188 Query: 94 SALDLNPRYYKVYANRALIRY---KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDE 150 AL +NP R I + K+G A+ + AL+++P A + G + + Sbjct: 189 KALRINPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 Query: 151 RYSD-LQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI--SLYSSIS 207 SD +K RA + + A A + + +YE+ AI + SI Sbjct: 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNG-GMVYEMQGSYANAVKYYK 266 + + G SY A +++ A + + ++ D G G +Y +G + ++ Sbjct: 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 Query: 267 KAL 269 K L Sbjct: 367 KVL 369 Score = 39.2 bits (91), Expect = 0.002 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 4/160 (2%) Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180 A + A KI+ D + + E + A A F ++ + A G+A Sbjct: 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKA 171 Query: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 + + +Y +++ + +A+ + + D G G + + AL F+ A+ LDP Sbjct: 172 RIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN 280 S + E+ ++ ++ YKK + + R Y+ N Sbjct: 232 CVSALV---ALGEVDLNFNDSDS-YKKGVQLLQRAYKENN 267 Score = 36.1 bits (83), Expect = 0.012 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 13/183 (7%) Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 +++ HP + Y G + + +A L + AL+++ + + K + Sbjct: 522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 Query: 121 MAIRDYGTALKINPDYDVAY--IGRGNIYRDERYSD----------LQKAFADFDRAIQL 168 A + + T LK AY I GN+Y ++ +KA + + ++ Sbjct: 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 Query: 169 KTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSAL 228 + A G +V +G + ++ + FSQ S + N Y+ Y A+ Sbjct: 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC-YVEQGQYRLAI 700 Query: 229 EDF 231 + + Sbjct: 701 QMY 703 Score = 33.0 bits (75), Expect = 0.090 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 8/138 (5%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 + V+R P + N G+V G F +A F + + V+ N A Sbjct: 632 LQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 Query: 115 KMGDVPMAIRDYGTALKI---NPDYDV-AYIGRGNIYRDERYSDLQKAFADFDRAIQLKT 170 + G +AI+ Y LK +V Y+ R Y + Q+A +A L Sbjct: 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA-WYEAGKL---QEAKEALLKARHLAP 747 Query: 171 SDGRAWYGRALVYQMRGE 188 S+ + ALV + E Sbjct: 748 SNTSVKFNLALVLKKLAE 765 >gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 486 Score = 49.0 bits (116), Expect = 2e-06 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%) Query: 82 NGDFEKALLDFQSALDLNPRYY----KVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137 NG++ KA + AL+++P K+Y NRAL+ ++G + AI D ALKI+ Y Sbjct: 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 Query: 138 VAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS 197 A + R N + ++A D+++A+QL+ + + E + +++ Sbjct: 322 KALLRRANCHLA--LEKWEEAVEDYEKAMQLEKD--------CEIRRTLREAQLALK--- 368 Query: 198 QAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF--------WFNGG 249 S D+Y GIS A+ + K A+ P K + + G Sbjct: 369 ------KSKRKDWYKILGISRNASDDEIKK-AYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 Query: 250 MVYEMQGSYANAVKYYKKALS 270 Y + V++ Sbjct: 422 EAYTILSDPMKRVRFDSGQDL 442 Score = 47.0 bits (111), Expect = 6e-06 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 213 GRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 G ++ K Y +AL+++ FAI++ P AS++ N M G + A+ ++++ + Sbjct: 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK 113 Query: 273 SRYYRAKNGILRISQD 288 + + + LR Q Sbjct: 114 DGFSKGQ---LREGQC 126 Score = 37.0 bits (85), Expect = 0.007 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 29/217 (13%) Query: 84 DFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAY--- 140 + AL ++ A+D+ P Y+NRA +G A+ D ++++ + Sbjct: 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 Query: 141 ----------IGRGNIYRDERYSDLQKAFADFDRAIQL---KTSDGRAWYGRALVYQMRG 187 I + ++ A ++ + + +A +A G Sbjct: 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP-------- 239 +Y+++ + + L + + + RG+ N D A+ F+ A+ LDP Sbjct: 184 DYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 Query: 240 ----KKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 KK G G+Y A + Y +AL++D Sbjct: 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 Score = 32.4 bits (73), Expect = 0.15 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 142 GRGN-IYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI 200 GN Y+ + Y + A ++ AI + + + RA M G +E+++ D Q++ Sbjct: 54 EEGNAFYKQKTYGN---ALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV 110 Query: 201 SLYSSIS 207 L S Sbjct: 111 RLKDGFS 117 >gnl|CDD|35597 KOG0376, KOG0376, KOG0376, Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]. Length = 476 Score = 48.7 bits (116), Expect = 2e-06 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 F+ A+ + A++L+P +ANRAL K+ A+ D A++++P Y AY+ Sbjct: 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 Query: 143 RGNIY-RDERYSDLQKAFADFDRAIQLKTSD 172 RG + KA D ++ +L +D Sbjct: 78 RGTAVMALGEFK---KALLDLEKVKKLAPND 105 Score = 42.9 bits (101), Expect = 1e-04 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 ++ +++ +S+AI L + Y+ R +++L +++ AL D AI LDP + Sbjct: 18 KVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYV 76 Query: 247 NGGMVYEMQGSYANAVKYYKKALSVD 272 G G + A+ +K + Sbjct: 77 RRGTAVMALGEFKKALLDLEKVKKLA 102 Score = 39.5 bits (92), Expect = 0.001 Identities = 20/81 (24%), Positives = 34/81 (41%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 +D + I P+ + R + + F AL D A++L+P Y K Y R Sbjct: 24 VDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 Query: 115 KMGDVPMAIRDYGTALKINPD 135 +G+ A+ D K+ P+ Sbjct: 84 ALGEFKKALLDLEKVKKLAPN 104 Score = 33.3 bits (76), Expect = 0.087 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 164 RAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN 223 +AI+L + + RAL + + ++ D +AI L + Y RG + +A Sbjct: 29 KAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR-RGTAVMALGE 87 Query: 224 YDSALEDFKFAINLDPKK 241 + AL D + L P Sbjct: 88 FKKALLDLEKVKKLAPND 105 Score = 33.3 bits (76), Expect = 0.093 Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276 L K +D A++ + AI LDP A ++ N + + S+ A+ KA+ +D Y Sbjct: 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 Query: 277 RA 278 +A Sbjct: 73 KA 74 >gnl|CDD|34396 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]. Length = 297 Score = 48.4 bits (115), Expect = 2e-06 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 16/199 (8%) Query: 45 LFPSMG-RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY 103 L+ S+G R + + + + P PE +N G+ G+F+ A F S L+L+P Y Sbjct: 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPD--YDVAYIGRGNIYRDERYSDLQKAFAD 161 + NR + Y G +A D + +P+ + + +Y +E+ D ++A + Sbjct: 134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW-----LYLNEQKLDPKQAKTN 188 Query: 162 FDRAIQLKTSDGRAWYGRALVYQMRG-----EYEKSIEDFSQAISLYSSISPDYYNGRGI 216 + + + SD W G +V G + ++ + + + + Y G Sbjct: 189 LKQ--RAEKSDKEQW-GWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK 245 Query: 217 SYLATKNYDSALEDFKFAI 235 YL+ + D A FK A+ Sbjct: 246 YYLSLGDLDEATALFKLAV 264 Score = 42.3 bits (99), Expect = 2e-04 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 75 RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP 134 RGV+Y G A DF AL + P +V+ + + G+ A + + L+++P Sbjct: 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 Query: 135 DYDVAYIGRG-NIYRDERYSDLQKAFADF 162 Y+ A++ RG +Y RY Q F Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 Score = 41.9 bits (98), Expect = 2e-04 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 155 LQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGR 214 +A D +RA L + R ++Y G + DFSQA+++ + P+ +N Sbjct: 55 ASRALTDEERAQLL--------FERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYL 105 Query: 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258 GI N+D+A E F + LDP N G+ G Y Sbjct: 106 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRY 149 Score = 26.5 bits (58), Expect = 8.7 Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 RG+ Y + A DF A+ + P + G+ G++ A + + L +D Sbjct: 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 Query: 274 RY 275 Y Sbjct: 131 TY 132 >gnl|CDD|39435 KOG4234, KOG4234, KOG4234, TPR repeat-containing protein [General function prediction only]. Length = 271 Score = 48.6 bits (115), Expect = 2e-06 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 82 NGDFEKALLDFQSALDLNPRYYK-----VYANRALIRYKMGDVPMAIRDYGTALKINPDY 136 NGD+E+A +Q AL+ P +Y+NRA K+ AI D A+++NP Y Sbjct: 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167 Query: 137 DVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175 + A R Y E+ ++A D+ + ++ S A Sbjct: 168 EKALERRAEAY--EKMEKYEEALEDYKKILESDPSRREA 204 Score = 47.0 bits (111), Expect = 6e-06 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 10/154 (6%) Query: 149 DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP 208 +E ++++K F+D ++ ++ +D G L G+YE++ + +A+ S S Sbjct: 73 EELMAEIEKIFSDEEKDKAIEKADSLKKEGNELF--KNGDYEEANSKYQEALESCPSTST 130 Query: 209 D----YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKY 264 + Y+ R + + + ++SA+ED AI L+P YE Y A++ Sbjct: 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALED 190 Query: 265 YKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298 YKK L D A+ I R+ +NE NE Sbjct: 191 YKKILESDPSRREAREAIARLPP----KINERNE 220 Score = 31.6 bits (71), Expect = 0.24 Identities = 21/68 (30%), Positives = 29/68 (42%) Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131 Y+ R +E A+ D A++LNP Y K RA KM A+ DY L+ Sbjct: 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 Query: 132 INPDYDVA 139 +P A Sbjct: 197 SDPSRREA 204 >gnl|CDD|34615 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]. Length = 257 Score = 48.1 bits (114), Expect = 3e-06 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 L A+P D E +G NG+F +A+ + A L P ++ + ++G Sbjct: 89 LQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 Query: 118 DVPMAIRDYGTALKINPDYDVAY--IGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175 A R Y AL++ P+ +G + R DL+ A A +D R Sbjct: 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRG----DLEDAETLLLPAYLSPAADSRV 204 Query: 176 WYGRALV 182 ALV Sbjct: 205 RQNLALV 211 Score = 40.8 bits (95), Expect = 5e-04 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 2/132 (1%) Query: 160 ADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYL 219 A A L+ + + A +RG+ + S+ + ++ + +G + + Sbjct: 53 AAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQK-SAIAYPKDRELLAAQGKNQI 111 Query: 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK 279 N+ A+ + A L P W G + G + A + Y++AL + Sbjct: 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 Query: 280 NGILRISQDLSS 291 N + +S L Sbjct: 172 NNLG-MSLLLRG 182 Score = 40.4 bits (94), Expect = 6e-04 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210 R + +A + +A +L +D AW G ++++ + QA+ L + P Sbjct: 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSI 170 Query: 211 YNGRGISYLATKNYDSA 227 N G+S L + + A Sbjct: 171 ANNLGMSLLLRGDLEDA 187 Score = 32.7 bits (74), Expect = 0.12 Identities = 16/57 (28%), Positives = 22/57 (38%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122 P++P N G+ + GD E A A +V N AL+ GD A Sbjct: 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 >gnl|CDD|32776 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]. Length = 389 Score = 46.4 bits (110), Expect = 8e-06 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 32/244 (13%) Query: 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYAN 108 MGRR D V+G+ + ++ +KA+ F L +P ++ + Sbjct: 19 MGRRSAQQDKQDQANRLSRD----YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLT 74 Query: 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADF------ 162 + G+V AIR + T L+ +PD ++R LQ+ D+ Sbjct: 75 LGNLFRSRGEVDRAIRIHQTLLE-SPDLTF----------EQRLLALQQLGRDYMAAGLL 123 Query: 163 DRA----IQLKTSDGRAWYGR---ALVYQMRGEYEKSIEDFSQAISL----YSSISPDYY 211 DRA QL A +YQ E+EK+I+ + + L Y +Y Sbjct: 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 Query: 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 LA+ + D A E K A+ D K G V +G Y AV+ ++ L Sbjct: 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 Query: 272 DSRY 275 + Y Sbjct: 244 NPEY 247 >gnl|CDD|35716 KOG0495, KOG0495, KOG0495, HAT repeat protein [RNA processing and modification]. Length = 913 Score = 45.4 bits (107), Expect = 2e-05 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 31/222 (13%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 + E+AL + AL P ++K++ I +M ++ MA Y K P+ ++ Sbjct: 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 Query: 143 RGNIYRDERYSDLQKAFADFDRA--------------IQLKTSDGRAWYGRALVYQMRGE 188 + +E+ L +A + DRA I+++ G L+ + E Sbjct: 725 LAKL--EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 Query: 189 YEKSIEDFSQAISLYS-----SISPDY-----YNGR-----GISYLATKNYDSALEDFKF 233 S +++AI L + S D ++ + + K + A E F+ Sbjct: 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER 842 Query: 234 AINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 A+ DP W G+ + + KK + + + Sbjct: 843 AVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 >gnl|CDD|37287 KOG2076, KOG2076, KOG2076, RNA polymerase III transcription factor TFIIIC [Transcription]. Length = 895 Score = 44.6 bits (105), Expect = 3e-05 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 13/235 (5%) Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 VI+ P +P Y G +Y GD EKAL + A LNP+ Y+++ A + ++G++ Sbjct: 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW---- 176 A Y A++ NP R ++Y ++ DL++A F + +QL Sbjct: 225 QARYCYSRAIQANPSNWELIYERSSLY--QKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 Query: 177 -YGRALVYQMRGEYEKSIEDFSQAISLYSSIS--PDYYNGRGISYLATKNYDSALEDFKF 233 A + E E++ + A+S + D + +L K D AL Sbjct: 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL-FLKNKQSDKALMKIVD 341 Query: 234 AINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 N + +K ++ E + NA+ K LS D R R ++ + + Sbjct: 342 DRNRESEKDDSEWD---TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 Score = 38.0 bits (88), Expect = 0.003 Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 37/257 (14%) Query: 59 TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR----- 113 + I+A+PS+ E R +Y GD ++A+ F L L+P + LIR Sbjct: 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHY 289 Query: 114 -YKMGDVPMAIRDYGTALKIN------PDYDV---------AYIGRGNIYRDERYSDLQK 157 + A + AL D ++ D+R + +K Sbjct: 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 Query: 158 AFADFDRAIQLK-------------TSDGRAWYGRALVYQMR-GEYEKSIEDFSQAISLY 203 +++D + + + D R + ++ E +++ F +++ Sbjct: 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 Query: 204 SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF-WFNGGMVYEMQGSYANAV 262 S D Y + Y AL N + + +F W+ Y G Y A+ Sbjct: 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 Query: 263 KYYKKALSVDSRYYRAK 279 ++Y+K L + A+ Sbjct: 470 EFYEKVLILAPDNLDAR 486 Score = 36.1 bits (83), Expect = 0.012 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 152 YSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYY 211 DL++A I+ + A+Y +Y+ RG+ EK++ + A L + + Sbjct: 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELW 210 Query: 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 N + A + AI +P + +Y+ G A++ + + L + Sbjct: 211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 Query: 272 DS 273 D Sbjct: 271 DP 272 Score = 34.5 bits (79), Expect = 0.031 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP-DYDVAYI 141 GD E+A + +PR Y I + GD+ A+ + A +NP DY++ Sbjct: 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 Query: 142 GRGNIY-RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI 200 + E+ ++ +A + RAIQ S+ Y R+ +YQ G+ ++++E F Q Sbjct: 213 ----LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ-- 266 Query: 201 SLYSSISPDYY 211 L P Sbjct: 267 -LLQLDPPVDI 276 Score = 29.5 bits (66), Expect = 1.2 Identities = 14/92 (15%), Positives = 38/92 (41%) Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242 G+Y++++ S + + + Y+ Y+ A+E ++ + L P Sbjct: 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 +Y+ G++ A++ ++ ++ D R Sbjct: 484 DARITLASLYQQLGNHEKALETLEQIINPDGR 515 >gnl|CDD|36388 KOG1173, KOG1173, KOG1173, Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning, Posttranslational modification, protein turnover, chaperones]. Length = 611 Score = 43.8 bits (103), Expect = 5e-05 Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 13/232 (5%) Query: 57 SLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM 116 ++ P + G K L +DL P + + Sbjct: 266 ITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 Query: 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176 G A R + A ++P + A++ G+ + E D +A A + A +L Sbjct: 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD--QAMAAYFTAARLMPGCHLPS 383 Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSA-------LE 229 + Y + + + F QA+++ S P + G+ + Y A LE Sbjct: 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442 Query: 230 DFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV---DSRYYRA 278 K +N N G Y Y A+ YY+KAL + D+ + + Sbjct: 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 Score = 43.0 bits (101), Expect = 9e-05 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 30/164 (18%) Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135 G+ Y + + A F+ AL + P + L+ +++G V +Y ALK Sbjct: 387 GMEYMRTNNLKLAEKFFKQALAIAP-------SDPLVLHELGVVAYTYEEYPEALKY--- 436 Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 QKA + K Y+ +YE++I+ Sbjct: 437 -------------------FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 Query: 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP 239 + +A+ L S + G Y N D A++ F A+ L P Sbjct: 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 Score = 36.1 bits (83), Expect = 0.012 Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135 G Y +E+A+ +Q AL L+P+ +A+ I + +G++ AI + AL + PD Sbjct: 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 >gnl|CDD|34394 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]. Length = 484 Score = 43.0 bits (101), Expect = 9e-05 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 4/117 (3%) Query: 164 RAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN 223 A + K A YGRAL + G+Y+++++ I+ +P Y G L Sbjct: 297 LAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANK 355 Query: 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKY---YKKALSVDSRYYR 277 A+E K A+ LDP N G A++ Y D + Sbjct: 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWD 412 Score = 41.5 bits (97), Expect = 3e-04 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%) Query: 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 L +I A P +P + G + ++A+ + AL L+P N L++ Sbjct: 327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP-------NSPLLQLN 379 Query: 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175 + + A++I Y ++ D + A +A + A Sbjct: 380 LAQALLKGGKPQEAIRILNRY---------LFNDPEDPNGWDLLA---QAYAELGNRAEA 427 Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLYSSISPD 209 RA Y + G E++I +A PD Sbjct: 428 LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 Score = 30.7 bits (69), Expect = 0.47 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY--YKVYANRALI 112 I L + P DP G+++ Y G+ +ALL L R ++ RA Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 Query: 113 RYKMG 117 + K+G Sbjct: 454 QVKLG 458 >gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin structure and dynamics]. Length = 700 Score = 43.0 bits (101), Expect = 1e-04 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 12/156 (7%) Query: 60 AVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 +++ P E ++G+ G E+A + L + + + + L++ Sbjct: 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 Query: 120 PMAIRDYGTALKINPDYDVAYIGRGNIYRDERY-----SDLQKAFADFDRAIQLKTSDGR 174 AI+ Y ALKI D I RD D + ++ +QL+ S Sbjct: 92 DEAIKCYRNALKIEKD-------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210 +W G A+ + GEY+ ++E + ++ Sbjct: 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180 Score = 33.4 bits (76), Expect = 0.078 Identities = 35/189 (18%), Positives = 74/189 (39%), Gaps = 11/189 (5%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 ++K L + L P + + A + L +G A L+ + V + Sbjct: 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202 G + R ++ +A + A++++ + + +L+ +YE +E +Q + L Sbjct: 81 LGLLQRSDK--KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 Query: 203 YSSISPDYYNGRGISYLATKNYDSA---LEDFKFAINLDPKKASFWFNGGMVYEMQ---- 255 S + G ++ Y A LE+F+ N P K + + ++Y+ Q Sbjct: 139 RPSQR-ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 Query: 256 -GSYANAVK 263 GS A++ Sbjct: 198 AGSLQKALE 206 Score = 31.8 bits (72), Expect = 0.21 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 +Y+K ++ Q + + + +G++ + A E + + D K W Sbjct: 21 KQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79 Query: 247 NGGMVYEMQGSYANAVKYYKKALSVDS 273 G++ Y A+K Y+ AL ++ Sbjct: 80 VLGLLQRSDKKYDEAIKCYRNALKIEK 106 >gnl|CDD|33959 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]. Length = 287 Score = 41.1 bits (96), Expect = 3e-04 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 33/145 (22%) Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 L ++ +P D EG+++ G Y G ALL +++AL L N +G Sbjct: 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPE---ILLG 195 Query: 118 DVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWY 177 AL Y KA A +A+ L ++ RA Sbjct: 196 --------LAEAL----------------YYQAGQQMTAKARALLRQALALDPANIRALS 231 Query: 178 GRALVYQMRGEYEKSIEDFSQAISL 202 A +G+Y ++ + + L Sbjct: 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 Score = 27.2 bits (60), Expect = 5.7 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 47 PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNP 100 M + L + P++ ++ GD+ +A +Q LDL P Sbjct: 206 QQMTAKA-RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 >gnl|CDD|39841 KOG4642, KOG4642, KOG4642, Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]. Length = 284 Score = 39.2 bits (91), Expect = 0.002 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242 + Y+ +I+ +S+AI + + YY R + +L K+++ ED + A+ LDP Sbjct: 20 CFIPKRYDDAIDCYSRAICI-NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV 78 Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALS 270 + G Y A+K ++A S Sbjct: 79 KAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 Score = 30.0 bits (67), Expect = 0.78 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 79 YGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDV 138 + ++ A+ + A+ +NP Y NRAL K+ D AL+++P+ Sbjct: 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 Query: 139 AYIGRGNIYR-----DERYSDLQKAF 159 A+ G DE LQ+A+ Sbjct: 80 AHYFLGQWLLQSKGYDEAIKVLQRAY 105 Score = 28.1 bits (62), Expect = 2.9 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202 + +RY D A + RAI + + + RAL + +E ED +A+ L Sbjct: 17 GNKCFIPKRYDD---AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL 73 Query: 203 -YSSISPDYYNGRGISYLATKNYDSALEDFKFAINL 237 + + Y+ G+ L +K YD A++ + A +L Sbjct: 74 DPNLVKAHYFLGQW--LLQSKGYDEAIKVLQRAYSL 107 >gnl|CDD|144197 pfam00515, TPR_1, Tetratricopeptide repeat. Length = 34 Score = 38.6 bits (91), Expect = 0.002 Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 + G Y G +++A+ ++ AL+LNP Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34 Score = 38.6 bits (91), Expect = 0.002 Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLY 203 +A Y Y G+Y+++IE + +A+ L Sbjct: 2 KALYNLGNAYFKLGKYDEAIEYYEKALELN 31 Score = 38.6 bits (91), Expect = 0.002 Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 103 YKVYANRALIRYKMGDVPMAIRDYGTALKINPDY 136 K N +K+G AI Y AL++NP+ Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34 Score = 37.0 bits (87), Expect = 0.006 Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 G +Y YD A+E ++ A+ L+P Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPN 33 Score = 35.1 bits (82), Expect = 0.022 Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 A +N G Y G Y A++YY+KAL ++ Sbjct: 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34 Score = 27.8 bits (63), Expect = 3.7 Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Query: 139 AYIGRGNIYRDERYSDLQKAFADFDRAIQL 168 A GN Y +A +++A++L Sbjct: 3 ALYNLGNAYFKLG--KYDEAIEYYEKALEL 30 >gnl|CDD|38270 KOG3060, KOG3060, KOG3060, Uncharacterized conserved protein [Function unknown]. Length = 289 Score = 37.6 bits (87), Expect = 0.004 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 48 SMGRRVN-IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVY 106 + G+ + I L + +D E ++ +Y GDFEKA + L + P + Sbjct: 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF 191 Query: 107 ANRALIRYKMG---DVPMAIRDYGTALKINPDYDVAYIG 142 A + Y G ++ +A + Y ALK+NP A G Sbjct: 192 QRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 >gnl|CDD|37051 KOG1840, KOG1840, KOG1840, Kinesin light chain [Cytoskeleton]. Length = 508 Score = 37.6 bits (87), Expect = 0.004 Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 53/219 (24%) Query: 76 GVVYGMNGDFEKALLDFQSAL-DLNPRYYKVYANRALIRYKMGDVPM-------AIRDYG 127 +Y + G EKA + AL L + A + + V A+ Y Sbjct: 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYE 265 Query: 128 TALKI--------NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGR 179 AL I +P +Y + +A +RA+++ A + Sbjct: 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQG--KFAEAEEYCERALEIYEKLLGASHPE 323 Query: 180 --------ALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDF 231 A + Q EYE++ + +A+ +Y G LA Sbjct: 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYL-----DAPGEDNVNLA----------- 367 Query: 232 KFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 K NL +Y G Y A + YKKA+ Sbjct: 368 KIYANL-----------AELYLKMGKYKEAEELYKKAIQ 395 >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3. Length = 168 Score = 36.9 bits (86), Expect = 0.006 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 210 YYNGRGISYLATKNYDSALEDFKFAINL--DPKKASF-WFNGGMVYEMQGSYANAVKYYK 266 YY G+S + Y AL+++ A+ L DP S+ +N G+++ G + A++YY Sbjct: 38 YYRD-GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 Query: 267 KALSVDSRYYRAKNGI 282 +AL + +A N + Sbjct: 97 QALERNPFLPQALNNM 112 Score = 33.4 bits (77), Expect = 0.072 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 YN+ G+++ NG+ KAL + AL+ NP + N A+I + G Sbjct: 76 YNI-GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 Score = 30.4 bits (69), Expect = 0.58 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%) Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLYSSISPD--------YYNG-----RGISYLATK 222 Y L++ GE+ K++E + QA+ + +Y G +G S +A Sbjct: 75 LYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 Query: 223 NYDSALEDFKFAINLDP 239 +D A E +K AI L P Sbjct: 135 WFDQAAEYWKQAIALAP 151 >gnl|CDD|39755 KOG4555, KOG4555, KOG4555, TPR repeat-containing protein [Function unknown]. Length = 175 Score = 37.0 bits (85), Expect = 0.007 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL-NPRYY---KVYANRA 110 ++ + P YN R + GD E+AL D AL+L + + + R Sbjct: 63 LELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 Query: 111 LIRYKMGDVPMAIRDYGTALKI 132 L+ +G+ A D+ A ++ Sbjct: 123 LLYRLLGNDDAARADFEAAAQL 144 Score = 35.5 bits (81), Expect = 0.021 Identities = 19/66 (28%), Positives = 29/66 (43%) Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 + I+ + D ALE F A+ L P++AS + N +QG A+ KAL + Sbjct: 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 Query: 274 RYYRAK 279 R Sbjct: 109 DQTRTA 114 Score = 33.1 bits (75), Expect = 0.083 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINL-DPK---KA 242 G+ + ++E F QA+ L YN R + + + AL+D A+ L + Sbjct: 57 GDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYR 277 + G++Y + G+ A ++ A + S++ R Sbjct: 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 Score = 27.0 bits (59), Expect = 6.2 Identities = 9/35 (25%), Positives = 21/35 (60%) Query: 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK 104 + + RG++Y + G+ + A DF++A L ++ + Sbjct: 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 >gnl|CDD|36799 KOG1586, KOG1586, KOG1586, Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]. Length = 288 Score = 36.1 bits (83), Expect = 0.011 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 130 LKINPDYDVA--YIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMR- 186 LK +D A Y+ N Y+ D ++A ++AI++ T GR + A + + Sbjct: 65 LKAGSKHDAATTYVEAANCYKKV---DPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEI 119 Query: 187 GE-YEKSIEDFSQAISLYSSISPDYYNGRGISYLATK------NYDSALEDFKFAINLDP 239 E YE ++DF +AI+ Y + +YY G A K Y + LE + AI++ Sbjct: 120 AEIYESDLQDFEKAIAHYEQ-AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178 Query: 240 KKASF 244 + A Sbjct: 179 QVARS 183 >gnl|CDD|36344 KOG1129, KOG1129, KOG1129, TPR repeat-containing protein [General function prediction only]. Length = 478 Score = 35.8 bits (82), Expect = 0.016 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%) Query: 114 YKMGDVPM-AIRDYGTALKINPDYDVAYI-GRGNIYRDERYSDLQKAFADFDRAIQLKTS 171 Y+ D P A+ G L P +DV Y+ G+ I+ E + A + ++L Sbjct: 266 YQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH--EAMEQQEDALQLYKLVLKLHPI 322 Query: 172 DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDF 231 + A A+ Y E ++ + + + + + SP+ + G+ L + D L F Sbjct: 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 Query: 232 KFAINL---DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282 + A++ + A W+N G V G + A + ++ AL+ D+++ A N + Sbjct: 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 Score = 32.0 bits (72), Expect = 0.20 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131 YN+ V + GDF A F+ AL + ++ + N A++ + GD+ A A Sbjct: 399 YNLGFVAVTI-GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 Query: 132 INPD 135 + PD Sbjct: 458 VMPD 461 Score = 31.6 bits (71), Expect = 0.24 Identities = 11/53 (20%), Positives = 17/53 (32%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118 E N V+ +GD A +A + P +V N + G Sbjct: 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVHYGL 478 Score = 29.3 bits (65), Expect = 1.3 Identities = 13/73 (17%), Positives = 25/73 (34%) Query: 201 SLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYAN 260 SL PD + Y + AL ++ P ++ ++E + Sbjct: 249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 Query: 261 AVKYYKKALSVDS 273 A++ YK L + Sbjct: 309 ALQLYKLVLKLHP 321 >gnl|CDD|36389 KOG1174, KOG1174, KOG1174, Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning, Posttranslational modification, protein turnover, chaperones]. Length = 564 Score = 35.0 bits (80), Expect = 0.023 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 5/214 (2%) Query: 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD 135 G NGD+ +A F S L NP + A++ + G Sbjct: 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY 298 Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 + + DE+ ++A ++ I + + A + + + +++ Sbjct: 299 TASHWFVHAQLLYDEK--KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 Query: 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA-SFWFNGGMV-YE 253 F A L + Y G SYLA K + A + I L A S G +V + Sbjct: 357 FRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP 415 Query: 254 MQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 A K+ +K+L ++ Y A N I + Q Sbjct: 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 Score = 35.0 bits (80), Expect = 0.026 Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 50/281 (17%) Query: 32 VVSVILLIEG-CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALL 90 + +V+L EG C M TA + V + FE+AL Sbjct: 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTA---------SHWFVHAQLLYDEKKFERALN 321 Query: 91 DFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP-DYDV------AYIGR 143 + +D PR ++ + + + A+ + TA + P ++ +Y+ + Sbjct: 322 FVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 Query: 144 G-----NIYRDERYSDLQ---KAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIE- 194 N + Q ++ F + R + + EKS++ Sbjct: 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE--------KAKKFAEKSLKI 433 Query: 195 --DFSQAISLYSSI-SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMV 251 ++ A++L + + + I L + L F + + G + Sbjct: 434 NPIYTPAVNLIAELCQVEGPTKDIIKLL-----EKHLIIF--------PDVNLHNHLGDI 480 Query: 252 YEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSST 292 Q A++YY KAL D + R G+ + + + Sbjct: 481 MRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 >gnl|CDD|39364 KOG4162, KOG4162, KOG4162, Predicted calmodulin-binding protein [Signal transduction mechanisms]. Length = 799 Score = 35.0 bits (80), Expect = 0.028 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%) Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP------DYYNGRGISYLATKNYDSA 227 +Y R L+ +++G+ E++ E F A++L P + G LA K S Sbjct: 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKR--SL 742 Query: 228 LEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 L D A+ LDP W+ G V++ G A + ++ AL ++ Sbjct: 743 LSD---ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 >gnl|CDD|37214 KOG2003, KOG2003, KOG2003, TPR repeat-containing protein [General function prediction only]. Length = 840 Score = 33.9 bits (77), Expect = 0.055 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%) Query: 194 EDFSQAISLYS-SISPDYYN-----GRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247 +DF+ A +++ D YN +G A + D A E +K A+N D FN Sbjct: 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529 Query: 248 GGMVYEMQGSYANAVKYYKK 267 G+ E G+ A+ + K Sbjct: 530 IGLTAEALGNLDEALDCFLK 549 Score = 29.7 bits (66), Expect = 1.1 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 14/103 (13%) Query: 179 RALVYQMRGEYEKSIE--------DFSQAISLYSSISPDYYNGRGISYLATKNYDSALED 230 +A G+ E +IE D A + +++ + G + + Y Sbjct: 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI--- 481 Query: 231 FKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 A+N+D A+ N G + G A ++YK+AL+ D+ Sbjct: 482 ---ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 Score = 29.3 bits (65), Expect = 1.5 Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 3/200 (1%) Query: 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYG 127 + +G + NGD +KA ++ AL+ + + N L +G++ A+ + Sbjct: 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 Query: 128 TALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRG 187 I + + NIY E D +A +A L +D A +Y G Sbjct: 549 KLHAILLNNAEVLVQIANIY--ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG 606 Query: 188 EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247 + ++ + + + + + Y+ T+ + A+ F+ A + P ++ + Sbjct: 607 DKSQAFQCHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 Query: 248 GGMVYEMQGSYANAVKYYKK 267 + G+Y A YK Sbjct: 666 IASCFRRSGNYQKAFDLYKD 685 Score = 26.2 bits (57), Expect = 9.7 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 15/120 (12%) Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFD 163 K++ N +++ +G++ R++ A+K Y +A +I +D R L F Sbjct: 231 KMFPNAGILKMNIGNIHFKKREFSKAIKF---YRMALDQVPSINKDMRIKILNNIGVTFI 287 Query: 164 RAIQLKTS------------DGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYY 211 +A Q + + A + G+ EK E F + I + I D Y Sbjct: 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 >gnl|CDD|36524 KOG1310, KOG1310, KOG1310, WD40 repeat protein [General function prediction only]. Length = 758 Score = 33.6 bits (76), Expect = 0.076 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRA---LIRYKMGDVPMAIRDYGTALKINPDYDV 138 A+ + A+ P + NRA + R GD +A+RD AL++NP Sbjct: 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 Query: 139 AY 140 A+ Sbjct: 447 AH 448 >gnl|CDD|39707 KOG4507, KOG4507, KOG4507, Uncharacterized conserved protein, contains TPR repeats [Function unknown]. Length = 886 Score = 33.2 bits (75), Expect = 0.081 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 198 QAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 QA+++ SS P + G +YLA KN ALE F+ A+ L K Sbjct: 667 QALAINSS-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 >gnl|CDD|35763 KOG0543, KOG0543, KOG0543, FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]. Length = 397 Score = 32.6 bits (74), Expect = 0.12 Identities = 44/246 (17%), Positives = 81/246 (32%), Gaps = 34/246 (13%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYA--NRALIRYKMGDVPMAI 123 P+ V +G F++ L F+ + V AL K+G+V + Sbjct: 101 PNKGAVVKVHLEGELEDGVFDQRELRFEFGEGED---IDVIEGLEIALRMMKVGEVALVT 157 Query: 124 RD----YGTALK----INPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRA 175 D YG I P+ + +Y E K + + + Sbjct: 158 IDPKYAYGEEGGEPPLIPPNATL-------LYEVELLDFELKEDESWKMFAEERLEAADR 210 Query: 176 WYGRALVYQMRGEYEKSIEDFSQAISLY---SSISPDY-----------YNGRGISYLAT 221 R V G+++ + + + +A+S S + + YL Sbjct: 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL 270 Query: 222 KNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNG 281 K Y A+E + LDP + G G Y A ++KAL ++ A+ Sbjct: 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 Query: 282 ILRISQ 287 ++++ Q Sbjct: 331 LIKLKQ 336 Score = 29.2 bits (65), Expect = 1.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNP 100 I+S V+ P++ + RG G+++ A DFQ AL L P Sbjct: 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 >gnl|CDD|35771 KOG0551, KOG0551, KOG0551, Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]. Length = 390 Score = 31.9 bits (72), Expect = 0.23 Identities = 14/36 (38%), Positives = 20/36 (55%) Query: 106 YANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141 Y NRA + +G+ A+ D ALK+ P + AYI Sbjct: 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 Score = 30.4 bits (68), Expect = 0.72 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Query: 188 EYEKSIEDFSQAISLYS---SISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244 Y+ ++E +++ + ++ Y R + L NY SAL D A+ L P Sbjct: 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 Query: 245 WFNGGMVYEMQGSYANAVKYYKKALSVD 272 + G +A AV + ++ L +D Sbjct: 156 YIRGAKCLLELERFAEAVNWCEEGLQID 183 >gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]. Length = 287 Score = 31.5 bits (71), Expect = 0.31 Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 + ++A E + A+ L P+ A+ WF G E G + A Y++ L +D Sbjct: 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 >gnl|CDD|35765 KOG0545, KOG0545, KOG0545, Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]. Length = 329 Score = 31.5 bits (71), Expect = 0.33 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKAS 243 EY + +E S+ + + Y+ R ++ A N A D + + LDP AS Sbjct: 244 EEYYEVLEHCSEILRHHPGNVKAYFR-RAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 >gnl|CDD|36345 KOG1130, KOG1130, KOG1130, Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]. Length = 639 Score = 30.4 bits (68), Expect = 0.60 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 55/239 (23%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDV---- 138 GD + F++AL + + I ++G+ ++DY ALK + +D+ Sbjct: 31 GDCRAGVDFFKAALQVGTEDLSTLS---AIYSQLGNAYFYLKDYEKALKYH-THDLTLAR 86 Query: 139 ----------AYIGRGNIYR-----DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183 + GN + DE + + DF R + + + RA Y VY Sbjct: 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL-DFARELGDRVLESRALYNLGNVY 145 Query: 184 QMRGE--------------------YEKSIEDFSQAISLYSSISPDYYNGR-----GISY 218 +G+ E +++ + + + L + GR G +Y Sbjct: 146 HAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY 205 Query: 219 LATKNYDSALEDFKFAINLDPK---KASF---WFNGGMVYEMQGSYANAVKYYKKALSV 271 ++D A+ K + + + +A+ N G + G++ A+++YK L++ Sbjct: 206 YLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 >gnl|CDD|39028 KOG3824, KOG3824, KOG3824, Huntingtin interacting protein HYPE [General function prediction only]. Length = 472 Score = 28.9 bits (64), Expect = 1.8 Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 G EKA+ F+ AL L P ++ R ++ A + Y AL I+P A + Sbjct: 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 Query: 143 R 143 R Sbjct: 190 R 190 Score = 27.0 bits (59), Expect = 7.2 Identities = 13/50 (26%), Positives = 20/50 (40%) Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 + A+ F+ A+ L P G EM A + Y KAL++ Sbjct: 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 >gnl|CDD|32736 COG2912, COG2912, Uncharacterized conserved protein [Function unknown]. Length = 269 Score = 28.7 bits (64), Expect = 1.8 Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLY 203 R + A +R + L D R L+Y G Y ++ED S + Sbjct: 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 Score = 26.4 bits (58), Expect = 9.6 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK---YYKKALSVDS 273 + L ++ AL + ++L+P+ + G++Y G Y A++ Y+ + D Sbjct: 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 Query: 274 RYYRAKNGILRISQDL 289 + +L + Q+ Sbjct: 250 IAEMIRAQLLELRQES 265 >gnl|CDD|113501 pfam04733, Coatomer_E, Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex. Length = 290 Score = 28.2 bits (63), Expect = 2.6 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%) Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125 S P N + V G +E+A + ALD + + + N + +G Sbjct: 198 DSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNR 257 Query: 126 YGTALKIN-PDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ 167 + LK++ P + + DL + A+FDRA+Q Sbjct: 258 NLSQLKLSHPTHPLV-------------KDLNEKEAEFDRAVQ 287 >gnl|CDD|39354 KOG4151, KOG4151, KOG4151, Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones, Cell cycle control, cell division, chromosome partitioning, General function prediction only]. Length = 748 Score = 28.0 bits (62), Expect = 3.0 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 9/86 (10%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 G++ KA+ + + AL+ PR K RA + + +A+RD K++P Sbjct: 107 GEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDP-------- 158 Query: 143 RGNIYRDERYSDLQKAFADFDRAIQL 168 N+ E + +L+ D A Sbjct: 159 -SNVSASEIFEELKGLLELKDLASDE 183 >gnl|CDD|34134 COG4455, ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]. Length = 273 Score = 28.0 bits (62), Expect = 3.0 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK-VYANRALIR 113 I ++A P+D G + + + GD+EKAL A L+P+ R LIR Sbjct: 21 IGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 Query: 114 YKMGDVPMAIRDYGTALKINPDY 136 A R+ A P + Sbjct: 81 ------CEAARNEVFAGGAVPGF 97 >gnl|CDD|33728 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]. Length = 361 Score = 28.0 bits (62), Expect = 3.0 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 179 RALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGIS---YLATKNYDSALEDFKFAI 235 + LV Q +G+Y D+ A + Y G YL + A++ + A+ Sbjct: 248 KELVGQYKGDYLPE-ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 Query: 236 NLDPKKASFWFNGGMVYEMQGSYANAVKYYKK 267 LDP G +A+K+Y++ Sbjct: 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 >gnl|CDD|38823 KOG3617, KOG3617, KOG3617, WD40 and TPR repeat-containing protein [General function prediction only]. Length = 1416 Score = 27.7 bits (61), Expect = 4.4 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 182 VYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK 241 +Y G+Y +S+ + A+S YSS + DY++ I + K +A I + Sbjct: 914 LYSWWGQYLESVGEMDAALSFYSS-AKDYFSMVRIKCIQGKTDKAA------RIAEESGD 966 Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKA 268 + ++ +YE G AVK++ +A Sbjct: 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 >gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]. Length = 408 Score = 27.5 bits (61), Expect = 5.1 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 16/52 (30%) Query: 115 KMGDVPMAIRDYGT----------------ALKINPDYDVAYIGRGNIYRDE 150 K+ +VP AI D T L DYDV RG IY DE Sbjct: 119 KILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDE 170 >gnl|CDD|33953 COG4228, COG4228, Mu-like prophage DNA circulation protein [General function prediction only]. Length = 451 Score = 27.3 bits (60), Expect = 5.2 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 150 ERYSDLQKAFAD----FDRAIQLKTSDGRAWYGRALVYQMR 186 E D+Q+A A+ + A+ +++ G RAL Q+R Sbjct: 342 ESLDDVQRAAAEVGGLLENAVYTESAYGTTETLRALAGQLR 382 >gnl|CDD|37920 KOG2709, KOG2709, KOG2709, Uncharacterized conserved protein [Function unknown]. Length = 560 Score = 27.0 bits (59), Expect = 6.0 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 240 KKASFWFNGGMVYEMQGSYANAVKYYKKAL 269 K A G+ Y+ + NA+ Y+K L Sbjct: 20 KGAYASVEQGLCYDEVNDWENALAMYEKGL 49 >gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 305 Score = 26.9 bits (60), Expect = 6.9 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 14/90 (15%) Query: 41 GCSSLF--PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG--DFEKALLDFQSAL 96 GCS + ++ + ++L ++IRAH + GY +Y + F + F SA Sbjct: 215 GCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYR----MYRKSQTTGFPSLITIF-SA- 268 Query: 97 DLNPRYYKVYANRALIRYKMGDVPMAIRDY 126 P Y VY N+A + +V M IR + Sbjct: 269 ---PNYLDVYNNKAAVLKYENNV-MNIRQF 294 >gnl|CDD|111190 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 18kD subunit. This family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold. Length = 93 Score = 27.0 bits (60), Expect = 7.4 Identities = 10/15 (66%), Positives = 11/15 (73%) Query: 227 ALEDFKFAINLDPKK 241 +EDFKF I DPKK Sbjct: 56 TVEDFKFLIRKDPKK 70 >gnl|CDD|38291 KOG3081, KOG3081, KOG3081, Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]. Length = 299 Score = 26.9 bits (59), Expect = 7.5 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 12/85 (14%) Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142 G +E+A + ALD + + + AN ++ +G + LK++ + ++ Sbjct: 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS-HPEHPFV- 278 Query: 143 RGNIYRDERYSDLQKAFADFDRAIQ 167 L + A+FDR + Sbjct: 279 ----------KHLNEKEAEFDRLVL 293 >gnl|CDD|33428 COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]. Length = 280 Score = 26.4 bits (58), Expect = 8.9 Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 + +A D+ +E + I LDP + Y + G + A++ Y++ Sbjct: 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,695,628 Number of extensions: 198716 Number of successful extensions: 788 Number of sequences better than 10.0: 1 Number of HSP's gapped: 667 Number of HSP's successfully gapped: 198 Length of query: 298 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 205 Effective length of database: 4,254,100 Effective search space: 872090500 Effective search space used: 872090500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.9 bits)