BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780436|ref|YP_003064849.1| hypothetical protein
CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 298

 Score =  604 bits (1557), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA 60
           MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA
Sbjct: 1   MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA 60

Query: 61  VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120
           VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP
Sbjct: 61  VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120

Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180
           MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA
Sbjct: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180

Query: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
           LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK
Sbjct: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240

Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298
           KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE
Sbjct: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298


>gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 271

 Score = 33.9 bits (76), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 56  DSLTAVIRAHPSDPEGYNV---RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112
           + L A+ RA   D   + +   +G V    G   +AL++++ AL+L+P    + +N A+ 
Sbjct: 122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMS 181

Query: 113 RYKMGDVPMA 122
              MGD+  A
Sbjct: 182 YLLMGDLKTA 191


>gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 489

 Score = 26.6 bits (57), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 58  LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDF 92
           +TAV++  P+D  G  V  V+  ++G   K+  DF
Sbjct: 310 ITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDF 344


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 23.1 bits (48), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 56  DSLTAVIRAHPSDPEGY 72
           D L  V+ ++PSDP+ Y
Sbjct: 410 DQLRNVLTSNPSDPDSY 426


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 554

 Score = 22.7 bits (47), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 228 LEDFKFAINLDPKKASFWFNG--GMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285
           +E+  FA+    +K S   +    +  +M+   A+  +  +K +S++   Y A+    R+
Sbjct: 298 IEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRV 357

Query: 286 SQDLSS 291
           +QD+S+
Sbjct: 358 AQDIST 363


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,070
Number of Sequences: 1233
Number of extensions: 8157
Number of successful extensions: 38
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 298
length of database: 328,796
effective HSP length: 73
effective length of query: 225
effective length of database: 238,787
effective search space: 53727075
effective search space used: 53727075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)