Query gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs 109 out of 269
Neff 3.9
Searched_HMMs 23785
Date Mon May 30 11:18:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780437.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_U Ribosomal protein S21; 99.6 4.1E-18 1.7E-22 121.0 -7.0 64 17-80 94-158 (190)
2 3i1m_U 30S ribosomal protein S 99.6 7.8E-18 3.3E-22 119.4 -6.6 64 19-82 1-65 (71)
3 3ofo_U 30S ribosomal protein S 99.3 1.7E-15 7E-20 106.4 -11.1 49 22-70 1-50 (51)
4 2hfv_A Hypothetical protein RP 28.4 27 0.0011 15.7 2.3 31 16-50 64-94 (97)
5 1xb2_B EF-TS, elongation facto 19.4 49 0.0021 14.3 3.2 27 25-51 29-55 (291)
6 1zhv_A Hypothetical protein AT 13.9 68 0.0029 13.5 2.6 22 18-39 100-121 (134)
7 3bu8_A Telomeric repeat-bindin 12.5 30 0.0013 15.4 -0.4 32 18-49 119-150 (235)
8 2cp9_A EF-TS, EF-TSMT, elongat 11.8 79 0.0033 13.1 2.5 19 25-43 34-52 (64)
9 1ka5_A Phosphocarrier protein 9.0 1E+02 0.0042 12.5 4.8 31 16-46 57-87 (88)
10 2bwb_A Ubiquitin-like protein 8.5 1.1E+02 0.0044 12.4 1.7 12 25-36 32-43 (46)
No 1
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Cucumis sativus}
Probab=99.58 E-value=4.1e-18 Score=120.97 Aligned_cols=64 Identities=30% Similarity=0.427 Sum_probs=59.2
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310688872795-8999999999996434499987435126955899999999988899999999
Q gi|254780437|r 17 ISAVYVLVRDNN-VEQALRVLKKKMQGEGVLRELKMRGHYEKPSQKRVRLKSEAIRRSRKLMRKI 80 (95)
Q Consensus 17 ~~~i~V~V~~nn-vE~AlR~lKrkv~~eGi~~elR~R~~YEKPsekRrRkk~ea~kR~~K~~rK~ 80 (95)
.+++.|.|++|+ +|.|||+|||+|+++||++|+|+|+||||||++|++++++|.+|+++....-
T Consensus 94 ~ynv~V~VkenEsiE~ALRRFKKkV~ksGIi~ElR~Rr~YEKPSekKRRKk~eA~rR~kKrr~~~ 158 (190)
T 3bbn_U 94 AYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQA 158 (190)
T ss_dssp ---CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSCCCTTTTTTHHHHHHHHTTC---------
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70379985899999999999999999827599997540458858999999999999999986651
No 2
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3kc4_U 2qal_U* 2i2u_U 2i2p_U* 2qan_U* ...
Probab=99.57 E-value=7.8e-18 Score=119.42 Aligned_cols=64 Identities=34% Similarity=0.550 Sum_probs=58.5
Q ss_pred EEEEEEECCC-HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0688872795-899999999999643449998743512695589999999998889999999998
Q gi|254780437|r 19 AVYVLVRDNN-VEQALRVLKKKMQGEGVLRELKMRGHYEKPSQKRVRLKSEAIRRSRKLMRKIAQ 82 (95)
Q Consensus 19 ~i~V~V~~nn-vE~AlR~lKrkv~~eGi~~elR~R~~YEKPsekRrRkk~ea~kR~~K~~rK~~~ 82 (95)
++.|.|++|+ +|.|||+||++|+++||++|+|.|+||||||+++++++.+|.+|+.+...+...
T Consensus 1 M~~V~V~e~E~~e~aLRRFKr~vek~Gil~E~R~R~~yEKPs~~rkrk~~~A~kR~~k~~~~~~~ 65 (71)
T 3i1m_U 1 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENA 65 (71)
T ss_dssp ---CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSCCCSSSHHHHHHHHHHTSCC-----------
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98436189997999999999999984549999877623683799999999999999999999851
No 3
>3ofo_U 30S ribosomal protein S21; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_U* 2wwl_U 3ofp_U
Probab=99.28 E-value=1.7e-15 Score=106.41 Aligned_cols=49 Identities=41% Similarity=0.678 Sum_probs=45.3
Q ss_pred EEEECCC-HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8872795-899999999999643449998743512695589999999998
Q gi|254780437|r 22 VLVRDNN-VEQALRVLKKKMQGEGVLRELKMRGHYEKPSQKRVRLKSEAI 70 (95)
Q Consensus 22 V~V~~nn-vE~AlR~lKrkv~~eGi~~elR~R~~YEKPsekRrRkk~ea~ 70 (95)
|.|++|+ +|.|||+||++|+++||++|+|.|+||||||++++++..+|.
T Consensus 1 V~V~e~E~~e~aLRrFKr~v~k~Gil~E~r~R~~yekPs~~rkrk~~~A~ 50 (51)
T 3ofo_U 1 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAV 50 (51)
T ss_dssp CBCCCCSSCCSCCCCSGGGSSTTTTTTTSSSSCCSSSHHHHTTTTSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 95889998999999999999983519999988722682899999998842
No 4
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=28.41 E-value=27 Score=15.69 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 33106888727958999999999996434499987
Q gi|254780437|r 16 EISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELK 50 (95)
Q Consensus 16 ~~~~i~V~V~~nnvE~AlR~lKrkv~~eGi~~elR 50 (95)
.+.+..++|.+.+.+.|.+.|+ ..|+-.++|
T Consensus 64 g~~PrRimV~deD~~~Ar~IL~----dag~~~~Lr 94 (97)
T 2hfv_A 64 GVIPRRVLVHEDDLAGARRLLT----DAGLAHELR 94 (97)
T ss_dssp SSSCEEEEEEGGGHHHHHHHHH----HTTCCSSBC
T ss_pred CCCCEEEEECHHHHHHHHHHHH----HCCCHHHCC
T ss_conf 7664799983678999999999----769804226
No 5
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=19.35 E-value=49 Score=14.25 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=19.5
Q ss_pred ECCCHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 279589999999999964344999874
Q gi|254780437|r 25 RDNNVEQALRVLKKKMQGEGVLRELKM 51 (95)
Q Consensus 25 ~~nnvE~AlR~lKrkv~~eGi~~elR~ 51 (95)
-|||+|.|+-.|+++.+..|+-.--|.
T Consensus 29 ~~gD~ekAie~LRkk~~~~G~akA~Kk 55 (291)
T 1xb2_B 29 CGGDLKQAESWLHKQAQKEGWSKAARL 55 (291)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599899999999985156579888876
No 6
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=13.94 E-value=68 Score=13.48 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHH
Q ss_conf 1068887279589999999999
Q gi|254780437|r 18 SAVYVLVRDNNVEQALRVLKKK 39 (95)
Q Consensus 18 ~~i~V~V~~nnvE~AlR~lKrk 39 (95)
..=++.|+.++.|+|+..|...
T Consensus 100 ~tD~ilV~~~~~~~A~~~L~~~ 121 (134)
T 1zhv_A 100 DGDHLLVRSNDLEKTADLLANA 121 (134)
T ss_dssp SCEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCEEEEEHHHHHHHHHHHHHC
T ss_conf 1747998878999999999988
No 7
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=12.55 E-value=30 Score=15.44 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=19.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 10688872795899999999999643449998
Q gi|254780437|r 18 SAVYVLVRDNNVEQALRVLKKKMQGEGVLREL 49 (95)
Q Consensus 18 ~~i~V~V~~nnvE~AlR~lKrkv~~eGi~~el 49 (95)
..|.|-+.+++++.|..+|+|....++--+-+
T Consensus 119 qAV~VCme~g~FkeA~eil~r~f~~~~~~~~l 150 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKL 150 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999998066078999999984789986089
No 8
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=11.83 E-value=79 Score=13.11 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=14.0
Q ss_pred ECCCHHHHHHHHHHHHHHC
Q ss_conf 2795899999999999643
Q gi|254780437|r 25 RDNNVEQALRVLKKKMQGE 43 (95)
Q Consensus 25 ~~nnvE~AlR~lKrkv~~e 43 (95)
-|||+|.|+-.|+++-...
T Consensus 34 ~~gD~ekA~~~Lr~~g~~~ 52 (64)
T 2cp9_A 34 CGGDLKQAEIWLHKEAQKE 52 (64)
T ss_dssp HTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 2899999999999998999
No 9
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=8.98 E-value=1e+02 Score=12.52 Aligned_cols=31 Identities=10% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHCCHH
Q ss_conf 3310688872795899999999999643449
Q gi|254780437|r 16 EISAVYVLVRDNNVEQALRVLKKKMQGEGVL 46 (95)
Q Consensus 16 ~~~~i~V~V~~nnvE~AlR~lKrkv~~eGi~ 46 (95)
.-..++|.+...|-+.|+..|..-+.++|+.
T Consensus 57 ~G~~i~i~~~G~De~~Al~~l~~~l~~egl~ 87 (88)
T 1ka5_A 57 KDAEITIYADGSDESDAIQAISDVLSKEGLT 87 (88)
T ss_dssp TTCEEEEEEESSSHHHHHHHHHHHHHHHTSB
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999997848999999999999876899
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=8.53 E-value=1.1e+02 Score=12.41 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=8.6
Q ss_pred ECCCHHHHHHHH
Q ss_conf 279589999999
Q gi|254780437|r 25 RDNNVEQALRVL 36 (95)
Q Consensus 25 ~~nnvE~AlR~l 36 (95)
-+|||+.|+..|
T Consensus 32 ~~Gdv~~Aie~L 43 (46)
T 2bwb_A 32 SGGSVQGALDSL 43 (46)
T ss_dssp HTTCHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 599899999998
Done!