Query gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs 109 out of 269
Neff 3.9
Searched_HMMs 13730
Date Wed Jun 1 05:54:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780437.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zvpa2 d.58.18.9 (A:68-131) H 28.1 14 0.001 16.0 2.0 21 18-38 41-61 (64)
2 d2hmfa2 d.58.18.10 (A:404-470) 24.7 22 0.0016 14.9 3.7 30 12-41 36-65 (67)
3 d1udxa3 d.242.1.1 (A:341-416) 23.6 14 0.001 16.0 1.3 27 26-52 29-55 (76)
4 d1ptfa_ d.94.1.1 (A:) Histidin 21.2 26 0.0019 14.5 4.9 30 16-45 57-86 (87)
5 d1xb2b1 a.5.2.2 (B:56-111) Elo 17.9 31 0.0022 14.1 2.2 20 25-44 29-48 (56)
6 d2j0wa3 d.58.18.10 (A:386-449) 17.9 31 0.0022 14.1 3.3 29 12-40 34-62 (64)
7 d2cdqa3 d.58.18.10 (A:420-494) 17.5 32 0.0023 14.0 2.7 33 12-44 35-67 (75)
8 d1aipc1 a.5.2.2 (C:2-53) Elong 17.0 32 0.0024 13.9 2.2 15 25-39 27-41 (52)
9 d2hmfa3 d.58.18.10 (A:304-403) 16.1 34 0.0025 13.8 3.6 31 14-44 52-82 (100)
10 d1zhva2 d.58.18.8 (A:62-127) H 15.0 37 0.0027 13.6 2.6 21 18-38 40-60 (66)
No 1
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=28.11 E-value=14 Score=15.98 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.4
Q ss_pred CEEEEEEECCCHHHHHHHHHH
Q ss_conf 106888727958999999999
Q gi|254780437|r 18 SAVYVLVRDNNVEQALRVLKK 38 (95)
Q Consensus 18 ~~i~V~V~~nnvE~AlR~lKr 38 (95)
..=+++|..++.++|++.|+.
T Consensus 41 ~hDhifVp~~~~~~Al~~L~~ 61 (64)
T d1zvpa2 41 YHDHIFVQKEKAQQALQALGE 61 (64)
T ss_dssp SCEEEEEEGGGHHHHHHHHTT
T ss_pred CCCEEEECHHHHHHHHHHHHH
T ss_conf 153698735569999999999
No 2
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=24.75 E-value=22 Score=14.89 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 045433106888727958999999999996
Q gi|254780437|r 12 SEGREISAVYVLVRDNNVEQALRVLKKKMQ 41 (95)
Q Consensus 12 ~~~k~~~~i~V~V~~nnvE~AlR~lKrkv~ 41 (95)
+++-.-..+.+.|.+.+.|.|++.|.+..-
T Consensus 36 sq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~ 65 (67)
T d2hmfa2 36 AQGSSEVNISFVIDEKDLLNCVRKLHEKFI 65 (67)
T ss_dssp EESSCSSEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred EECCCCCEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 534860249999808999999999999985
No 3
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.65 E-value=14 Score=15.96 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 795899999999999643449998743
Q gi|254780437|r 26 DNNVEQALRVLKKKMQGEGVLRELKMR 52 (95)
Q Consensus 26 ~nnvE~AlR~lKrkv~~eGi~~elR~R 52 (95)
|-+-+.|+..|.+++.+.||.+.|++.
T Consensus 29 ~~~~~e~~~~f~~~l~~~Gv~~~L~~~ 55 (76)
T d1udxa3 29 KGDLMEAAGYLQEVFRRQGVEAALRAK 55 (76)
T ss_dssp EECTGGGHHHHHHHHHHTTHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 899899999999999987847999982
No 4
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=21.25 E-value=26 Score=14.49 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=26.0
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHCCH
Q ss_conf 331068887279589999999999964344
Q gi|254780437|r 16 EISAVYVLVRDNNVEQALRVLKKKMQGEGV 45 (95)
Q Consensus 16 ~~~~i~V~V~~nnvE~AlR~lKrkv~~eGi 45 (95)
.-..++|.+...|=+.|+..+...++++|+
T Consensus 57 ~G~~i~i~~~G~de~~Al~~l~~~l~~egl 86 (87)
T d1ptfa_ 57 QGSDVTITVDGADEAEGMAAIVETLQKEGL 86 (87)
T ss_dssp TTCEEEEEEESTTHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999787899999999999997479
No 5
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=17.89 E-value=31 Score=14.06 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=15.0
Q ss_pred ECCCHHHHHHHHHHHHHHCC
Q ss_conf 27958999999999996434
Q gi|254780437|r 25 RDNNVEQALRVLKKKMQGEG 44 (95)
Q Consensus 25 ~~nnvE~AlR~lKrkv~~eG 44 (95)
-|||+|.|+-.|+++-...+
T Consensus 29 ~~gD~ekA~e~LrkkG~a~a 48 (56)
T d1xb2b1 29 CGGDLKQAESWLHKQAQKEG 48 (56)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 38999999999999889889
No 6
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=17.85 E-value=31 Score=14.06 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 04543310688872795899999999999
Q gi|254780437|r 12 SEGREISAVYVLVRDNNVEQALRVLKKKM 40 (95)
Q Consensus 12 ~~~k~~~~i~V~V~~nnvE~AlR~lKrkv 40 (95)
+++-.-..+.+.|.+.+.+.|++.|....
T Consensus 34 ~~~~Se~~is~vV~~~d~~~Av~aLh~~F 62 (64)
T d2j0wa3 34 CYGASSHNLCFLVPGEDAEQVVQKLHSNL 62 (64)
T ss_dssp EESSCTTEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 99757027999983899999999999986
No 7
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.48 E-value=32 Score=14.01 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 045433106888727958999999999996434
Q gi|254780437|r 12 SEGREISAVYVLVRDNNVEQALRVLKKKMQGEG 44 (95)
Q Consensus 12 ~~~k~~~~i~V~V~~nnvE~AlR~lKrkv~~eG 44 (95)
++|-.-..+.+.|.+.+.+.|++.|-..+-.++
T Consensus 35 sqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~ 67 (75)
T d2cdqa3 35 SQGASKVNISFIVNEAEAEGCVQALHKSFFESG 67 (75)
T ss_dssp EECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSC
T ss_pred ECCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCC
T ss_conf 727641679999908999999999999995578
No 8
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=16.97 E-value=32 Score=13.93 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.0
Q ss_pred ECCCHHHHHHHHHHH
Q ss_conf 279589999999999
Q gi|254780437|r 25 RDNNVEQALRVLKKK 39 (95)
Q Consensus 25 ~~nnvE~AlR~lKrk 39 (95)
-|||+|.|+-.|+++
T Consensus 27 ~~gD~ekA~e~Lr~~ 41 (52)
T d1aipc1 27 AGWDEEKAVQLLRER 41 (52)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 399999999999997
No 9
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=16.07 E-value=34 Score=13.81 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 5433106888727958999999999996434
Q gi|254780437|r 14 GREISAVYVLVRDNNVEQALRVLKKKMQGEG 44 (95)
Q Consensus 14 ~k~~~~i~V~V~~nnvE~AlR~lKrkv~~eG 44 (95)
+-.-..+.+.|.+.+.+.|++.|.+....+|
T Consensus 52 ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~ 82 (100)
T d2hmfa3 52 GSSETNISLVVSEEDVDKALKALKREFGDFG 82 (100)
T ss_dssp CCTTCCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_conf 6776459999848999999999999998605
No 10
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.95 E-value=37 Score=13.64 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.7
Q ss_pred CEEEEEEECCCHHHHHHHHHH
Q ss_conf 106888727958999999999
Q gi|254780437|r 18 SAVYVLVRDNNVEQALRVLKK 38 (95)
Q Consensus 18 ~~i~V~V~~nnvE~AlR~lKr 38 (95)
..=++.|+.++.++|+..|..
T Consensus 40 ~~D~ilVp~~~~~~A~~~L~~ 60 (66)
T d1zhva2 40 DGDHLLVRSNDLEKTADLLAN 60 (66)
T ss_dssp SCEEEEEEGGGHHHHHHHHHH
T ss_pred ECCEEEEEHHHHHHHHHHHHH
T ss_conf 163799878789999999998
Done!