RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21
[Candidatus Liberibacter asiaticus str. psy62]
         (95 letters)



>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 66

 Score = 24.2 bits (53), Expect = 3.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 21 YVLVRDNNVEQALRVLKKK 39
          ++LVR N++E+   +L   
Sbjct: 43 HLLVRSNDLEKTADLLANA 61


>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio
          cholerae [TaxId: 666]}
          Length = 64

 Score = 23.9 bits (52), Expect = 4.3
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 21 YVLVRDNNVEQALRVLKK 38
          ++ V+    +QAL+ L +
Sbjct: 44 HIFVQKEKAQQALQALGE 61


>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean
           (Glycine max), beta-conglycinin alpha prime subunit
           [TaxId: 3847]}
          Length = 203

 Score = 23.4 bits (50), Expect = 5.3
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 28  NVEQALRVLKKKMQGEGVLRELKMRGHYEKPSQKRVRLKSEAIRRSRK 75
             E+  +VL  + +G+    E        + S+K++R  S+  + S +
Sbjct: 156 KFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIRELSKHAKSSSR 203


>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 203

 Score = 23.2 bits (50), Expect = 5.4
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 16  EISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELKM 51
           + +AV + +++   E+A ++LKK M  +   ++L+ 
Sbjct: 116 KEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRN 151


>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
          [TaxId: 4577]}
          Length = 261

 Score = 23.2 bits (49), Expect = 5.7
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 5  NAFRGIFSEGREISAVYVLVRDNNVEQALRVLKKKMQGEGV 45
          +    + ++G+     Y+   D ++      L + + G G 
Sbjct: 6  DTMAALMAKGKTAFIPYITAGDPDLATTAEAL-RLLDGCGA 45


>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
          thermophilus [TaxId: 274]}
          Length = 271

 Score = 23.2 bits (49), Expect = 6.6
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 1  MLVFNAFRGIFSEGREISAVYVLVRDNNVEQALRVLKKKMQG 42
          M    AF    SEGR     Y+     + E  L+ +++ +  
Sbjct: 1  MTTLEAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLPY 42


>d1b25a2 d.152.1.1 (A:1-210) Formaldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 210

 Score = 22.7 bits (49), Expect = 8.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 1   MLVFNAFRGIFSEGREISAVYVLVRDNNVE 30
            L    +  +  EG+    VY+ + D+NV 
Sbjct: 100 HLRRAGYDALVVEGKAKKPVYIYIEDDNVS 129


>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 204

 Score = 22.8 bits (49), Expect = 8.4
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 16  EISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELKM 51
           +I A+ V + + N ++A  V ++           K 
Sbjct: 116 KIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKS 151


>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 262

 Score = 22.7 bits (48), Expect = 8.6
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 20 VYVLVRDNNVEQALRVLKKKMQGEGVLRELKM 51
          V  L      + A++ +K     +  L E  +
Sbjct: 23 VM-LGDYRGNKVAVKCIKNDATAQAFLAEASV 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,646
Number of extensions: 13648
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 21
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)