BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21 [Candidatus Liberibacter asiaticus str. psy62] (95 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21 [Candidatus Liberibacter asiaticus str. psy62] Length = 95 Score = 187 bits (476), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/95 (100%), Positives = 95/95 (100%) Query: 1 MLVFNAFRGIFSEGREISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELKMRGHYEKPSQ 60 MLVFNAFRGIFSEGREISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELKMRGHYEKPSQ Sbjct: 1 MLVFNAFRGIFSEGREISAVYVLVRDNNVEQALRVLKKKMQGEGVLRELKMRGHYEKPSQ 60 Query: 61 KRVRLKSEAIRRSRKLMRKIAQREGAPVSRLRQHR 95 KRVRLKSEAIRRSRKLMRKIAQREGAPVSRLRQHR Sbjct: 61 KRVRLKSEAIRRSRKLMRKIAQREGAPVSRLRQHR 95 >gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 25.4 bits (54), Expect = 0.18, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 65 LKSEAIRRSRKLMRKIAQREGAPVSRLRQ 93 + S +IRR+ K +RKI G PVS + + Sbjct: 126 VSSASIRRAVKDIRKIIISSGIPVSSISE 154 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.136 0.367 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,941 Number of Sequences: 1233 Number of extensions: 1747 Number of successful extensions: 4 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 95 length of database: 328,796 effective HSP length: 60 effective length of query: 35 effective length of database: 254,816 effective search space: 8918560 effective search space used: 8918560 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 31 (16.5 bits)