HHsearch alignment for GI: 254780438 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=94.21 E-value=0.071 Score=34.41 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=79.2
Q ss_pred EEEEECCCHHHHH---HHHHHCCCEEEE---EECCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCC-CCEEEEE----ECC
Q ss_conf 5888348568999---998507212897---10165553335-7822133378899999862026-9638997----254
Q gi|254780438|r 73 LNIEGYPNETFLN---LCERYKPEQITL---VPDDPHQLTSD-HGWDFLQNQALLTKTVARLHNL-GSRISLF----ADG 140 (261)
Q Consensus 73 lNiEg~p~~e~i~---ia~~ikP~qvtL---VPe~r~elTTe-gGldv~~~~~~L~~~i~~l~~~-girvSLF----IDp 140 (261)
T Consensus 69 vQl~G~dp~~la~Aa~i~~~~g~d~IDlN~GCP~~k--V~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~ 146 (333)
T PRK11815 69 LQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDR--VQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD 146 (333)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHH--HHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 997479999999999999873988535238998688--732780178707999999999999873488535786316777
Q ss_pred -CCCC---HHHHHHHHCCCCEEEECCCCCHHHHH---HHHHH-HHHHHHHHHHHHHHHHC-CCEEEECCC-CCHHHHHHH
Q ss_conf -4441---47999974066146511211102444---35643-36668899987665415-623520789-898779999
Q gi|254780438|r 141 -NGNE---HSLQAAKLTGADCIELYTGPYGACYN---NPQQE-RIFLNKLAITAQLAQKM-DLQINAGHD-LTIQNIPNL 210 (261)
Q Consensus 141 -d~~q---~~i~~a~~~Gad~VElhTG~Ya~a~~---~~~~~-~~el~~i~~aa~~A~~l-gL~VnAGHg-Ln~~Nl~~~ 210 (261)
T Consensus 147 ~d~~~~l~~f~~~~~~aG~~~i~vH~R~---a~l~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~~--- 220 (333)
T PRK11815 147 QDSYEFLCDFVDTVAEAGCDRFIVHARK---AWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEA--- 220 (333)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEHH---HHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHH---
T ss_conf 7528999999999997599889996027---8772678777505873048999999976678718845996999999---
Q ss_pred HHHCCCCEEEEEHHHHHH--------HHHHHH-------HHHHHHHHHHHHHHH
Q ss_conf 973699638842599999--------999940-------999999999999741
Q gi|254780438|r 211 INAIPYISEISVGHAFAA--------TALECG-------VKEAVFCFRRACGQH 249 (261)
Q Consensus 211 i~~Ip~I~EvsIGHaiIs--------eAl~~G-------L~~aI~~~~~ii~~~ 249 (261)
T Consensus 221 ~~~l~~~DGVMiGRga~~nPwif~~id~~~~g~~~~~~s~~ei~~~~~~y~~~~ 274 (333)
T PRK11815 221 KEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPAPVPSREEVLEAMLPYIEAH 274 (333)
T ss_pred HHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999855996211486755997899999998489999999999999999999999