HHsearch alignment for GI: 254780438 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

Probab=93.47  E-value=0.62  Score=27.94  Aligned_cols=84  Identities=12%  Similarity=0.073  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             37889999986202696389972544441479999740661465112111024443564336668899987665415623
Q gi|254780438|r  116 NQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQ  195 (261)
Q Consensus       116 ~~~~L~~~i~~l~~~girvSLFIDpd~~q~~i~~a~~~Gad~VElhTG~Ya~a~~~~~~~~~el~~i~~aa~~A~~lgL~  195 (261)
T Consensus       259 ~~~r~~eic~~i~~l~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~  338 (472)
T TIGR03471       259 DKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIK  338 (472)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             99999999999987698278763034899999999983984899803758999999853899899999999988757987


Q ss_pred             EEEC
Q ss_conf             5207
Q gi|254780438|r  196 INAG  199 (261)
Q Consensus       196 VnAG  199 (261)
T Consensus       339 v~~~  342 (472)
T TIGR03471       339 VHGT  342 (472)
T ss_pred             EEEE
T ss_conf             9999